locus-tag class description E3U36_00015 PF06173 Protein of unknown function (DUF986) E3U36_00020 PF03613 PTS system mannose/fructose/sorbose family IID component E3U36_00025 PF03609 PTS system sorbose-specific iic component E3U36_00030 PF03610 PTS system fructose IIA component E3U36_00030 PF03830 PTS system sorbose subfamily IIB component E3U36_00035 PF13737 Transposase DDE domain E3U36_00040 PF03466 LysR substrate binding domain E3U36_00040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3U36_00050 PF01396 Topoisomerase DNA binding C4 zinc finger E3U36_00050 PF01751 Toprim domain E3U36_00050 PF01131 DNA topoisomerase E3U36_00050 PF08272 Topoisomerase I zinc-ribbon-like E3U36_00055 PF01343 Peptidase family S49 E3U36_00055 PF08496 Peptidase family S49 N-terminal E3U36_00060 PF00106 short chain dehydrogenase E3U36_00065 PF13737 Transposase DDE domain E3U36_00070 PF01479 S4 domain E3U36_00070 PF00849 RNA pseudouridylate synthase E3U36_00075 PF01300 Telomere recombination E3U36_00080 PF02811 PHP domain E3U36_00090 PF00591 Glycosyl transferase family, a/b domain E3U36_00090 PF00117 Glutamine amidotransferase class-I E3U36_00090 PF02885 Glycosyl transferase family, helical bundle domain E3U36_00095 PF00591 Glycosyl transferase family, a/b domain E3U36_00095 PF02885 Glycosyl transferase family, helical bundle domain E3U36_00095 PF00117 Glutamine amidotransferase class-I E3U36_00110 PF00290 Tryptophan synthase alpha chain E3U36_00115 PF13737 Transposase DDE domain E3U36_00130 PF13737 Transposase DDE domain E3U36_00145 PF01979 Amidohydrolase family E3U36_00175 PF01494 FAD binding domain E3U36_00180 PF00919 Uncharacterized protein family UPF0004 E3U36_00180 PF01938 TRAM domain E3U36_00180 PF04055 Radical SAM superfamily E3U36_00185 PF02562 PhoH-like protein E3U36_00190 PF02130 Uncharacterized protein family UPF0054 E3U36_00195 PF00571 CBS domain E3U36_00195 PF03471 Transporter associated domain E3U36_00200 PF00795 Carbon-nitrogen hydrolase E3U36_00210 PF08264 Anticodon-binding domain of tRNA E3U36_00210 PF00133 tRNA synthetases class I (I, L, M and V) E3U36_00210 PF13603 Leucyl-tRNA synthetase, Domain 2 E3U36_00215 PF04390 Lipopolysaccharide-assembly E3U36_00220 PF14840 Processivity clamp loader gamma complex DNA pol III C-term E3U36_00220 PF06144 DNA polymerase III, delta subunit E3U36_00225 PF01467 Cytidylyltransferase-like E3U36_00235 PF02590 Predicted SPOUT methyltransferase E3U36_00240 PF03717 Penicillin-binding Protein dimerisation domain E3U36_00240 PF00905 Penicillin binding protein transpeptidase domain E3U36_00245 PF01098 Cell cycle protein E3U36_00250 PF05036 Sporulation related domain E3U36_00250 PF03330 Lytic transglycolase E3U36_00255 PF03330 Lytic transglycolase E3U36_00255 PF05036 Sporulation related domain E3U36_00260 PF00768 D-alanyl-D-alanine carboxypeptidase E3U36_00260 PF07943 Penicillin-binding protein 5, C-terminal domain E3U36_00265 PF04359 Protein of unknown function (DUF493) E3U36_00275 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family E3U36_00275 PF04055 Radical SAM superfamily E3U36_00290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3U36_00290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3U36_00300 PF07972 NrdI Flavodoxin like E3U36_00310 PF07972 NrdI Flavodoxin like E3U36_00325 PF00571 CBS domain E3U36_00325 PF00005 ABC transporter E3U36_00330 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_00335 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E3U36_00345 PF13737 Transposase DDE domain E3U36_00355 PF01467 Cytidylyltransferase-like E3U36_00355 PF00294 pfkB family carbohydrate kinase E3U36_00360 PF04380 Membrane fusogenic activity E3U36_00375 PF00356 Bacterial regulatory proteins, lacI family E3U36_00375 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3U36_00385 PF01795 MraW methylase family E3U36_00390 PF04999 Cell division protein FtsL E3U36_00395 PF03717 Penicillin-binding Protein dimerisation domain E3U36_00395 PF00905 Penicillin binding protein transpeptidase domain E3U36_00400 PF08245 Mur ligase middle domain E3U36_00400 PF02875 Mur ligase family, glutamate ligase domain E3U36_00400 PF01225 Mur ligase family, catalytic domain E3U36_00405 PF01225 Mur ligase family, catalytic domain E3U36_00405 PF02875 Mur ligase family, glutamate ligase domain E3U36_00405 PF08245 Mur ligase middle domain E3U36_00410 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 E3U36_00410 PF00953 Glycosyl transferase family 4 E3U36_00415 PF02875 Mur ligase family, glutamate ligase domain E3U36_00415 PF08245 Mur ligase middle domain E3U36_00420 PF01098 Cell cycle protein E3U36_00425 PF03033 Glycosyltransferase family 28 N-terminal domain E3U36_00425 PF04101 Glycosyltransferase family 28 C-terminal domain E3U36_00430 PF01225 Mur ligase family, catalytic domain E3U36_00430 PF02875 Mur ligase family, glutamate ligase domain E3U36_00430 PF08245 Mur ligase middle domain E3U36_00435 PF01820 D-ala D-ala ligase N-terminus E3U36_00435 PF07478 D-ala D-ala ligase C-terminus E3U36_00440 PF08478 POTRA domain, FtsQ-type E3U36_00440 PF03799 Cell division protein FtsQ E3U36_00445 PF02491 SHS2 domain inserted in FTSA E3U36_00450 PF00091 Tubulin/FtsZ family, GTPase domain E3U36_00450 PF12327 FtsZ family, C-terminal domain E3U36_00455 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E3U36_00465 PF06558 Secretion monitor precursor protein (SecM) E3U36_00470 PF07516 SecA Wing and Scaffold domain E3U36_00470 PF01043 SecA preprotein cross-linking domain E3U36_00470 PF07517 SecA DEAD-like domain E3U36_00470 PF02810 SEC-C motif E3U36_00475 PF00293 NUDIX domain E3U36_00480 PF03884 DNA gyrase inhibitor YacG E3U36_00485 PF07072 Cell division protein E3U36_00490 PF01121 Dephospho-CoA kinase E3U36_00500 PF13737 Transposase DDE domain E3U36_00525 PF00154 recA bacterial DNA recombination protein E3U36_00530 PF01411 tRNA synthetases class II (A) E3U36_00530 PF02272 DHHA1 domain E3U36_00530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3U36_00535 PF02599 Global regulator protein family E3U36_00540 PF13737 Transposase DDE domain E3U36_00555 PF04262 Glutamate-cysteine ligase E3U36_00560 PF02664 S-Ribosylhomocysteinase (LuxS) E3U36_00570 PF13737 Transposase DDE domain E3U36_00580 PF00448 SRP54-type protein, GTPase domain E3U36_00580 PF02881 SRP54-type protein, helical bundle domain E3U36_00580 PF02978 Signal peptide binding domain E3U36_00585 PF00886 Ribosomal protein S16 E3U36_00590 PF01782 RimM N-terminal domain E3U36_00590 PF05239 PRC-barrel domain E3U36_00595 PF01746 tRNA (Guanine-1)-methyltransferase E3U36_00600 PF01245 Ribosomal protein L19 E3U36_00610 PF02153 Prephenate dehydrogenase E3U36_00610 PF01817 Chorismate mutase type II E3U36_00620 PF13737 Transposase DDE domain E3U36_00625 PF12697 Alpha/beta hydrolase family E3U36_00630 PF13737 Transposase DDE domain E3U36_00635 PF03222 Tryptophan/tyrosine permease family E3U36_00640 PF01261 Xylose isomerase-like TIM barrel E3U36_00645 PF03601 Conserved hypothetical protein 698 E3U36_00655 PF00324 Amino acid permease E3U36_00665 PF01032 FecCD transport family E3U36_00690 PF13520 Amino acid permease E3U36_00695 PF08411 Exonuclease C-terminal E3U36_00695 PF00929 Exonuclease E3U36_00705 PF13737 Transposase DDE domain E3U36_00730 PF12838 4Fe-4S dicluster domain E3U36_00735 PF01648 4'-phosphopantetheinyl transferase superfamily E3U36_00740 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E3U36_00745 PF02565 Recombination protein O C terminal E3U36_00745 PF11967 Recombination protein O N terminal E3U36_00750 PF01926 50S ribosome-binding GTPase E3U36_00750 PF07650 KH domain E3U36_00755 PF14622 Ribonuclease-III-like E3U36_00755 PF00035 Double-stranded RNA binding motif E3U36_00760 PF10502 Signal peptidase, peptidase S26 E3U36_00765 PF00679 Elongation factor G C-terminus E3U36_00765 PF00009 Elongation factor Tu GTP binding domain E3U36_00765 PF06421 GTP-binding protein LepA C-terminus E3U36_00765 PF03144 Elongation factor Tu domain 2 E3U36_00775 PF03888 MucB/RseB N-terminal domain E3U36_00775 PF17188 MucB/RseB C-terminal domain E3U36_00780 PF03873 Anti sigma-E protein RseA, C-terminal domain E3U36_00780 PF03872 Anti sigma-E protein RseA, N-terminal domain E3U36_00785 PF04542 Sigma-70 region 2 E3U36_00785 PF08281 Sigma-70, region 4 E3U36_00805 PF00271 Helicase conserved C-terminal domain E3U36_00805 PF00270 DEAD/DEAH box helicase E3U36_00810 PF01228 Glycine radical E3U36_00815 PF03167 Uracil DNA glycosylase superfamily E3U36_00820 PF01025 GrpE E3U36_00825 PF01513 ATP-NAD kinase E3U36_00835 PF04355 SmpA / OmlA family E3U36_00840 PF03658 RnfH family Ubiquitin E3U36_00845 PF03364 Polyketide cyclase / dehydrase and lipid transport E3U36_00850 PF01668 SmpB protein E3U36_00870 PF05930 Prophage CP4-57 regulatory protein (AlpA) E3U36_00900 PF13737 Transposase DDE domain E3U36_00935 PF01926 50S ribosome-binding GTPase E3U36_00940 PF13280 WYL domain E3U36_00940 PF08220 DeoR-like helix-turn-helix domain E3U36_00955 PF03230 Antirestriction protein E3U36_00995 PF13737 Transposase DDE domain E3U36_01005 PF13737 Transposase DDE domain E3U36_01010 PF02092 Glycyl-tRNA synthetase beta subunit E3U36_01010 PF05746 DALR anticodon binding domain E3U36_01015 PF02091 Glycyl-tRNA synthetase alpha subunit E3U36_01040 PF01202 Shikimate kinase E3U36_01045 PF01761 3-dehydroquinate synthase E3U36_01050 PF05036 Sporulation related domain E3U36_01055 PF02086 D12 class N6 adenine-specific DNA methyltransferase E3U36_01060 PF00834 Ribulose-phosphate 3 epimerase family E3U36_01065 PF13419 Haloacid dehalogenase-like hydrolase E3U36_01070 PF00579 tRNA synthetases class I (W and Y) E3U36_01075 PF13737 Transposase DDE domain E3U36_01080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3U36_01080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3U36_01085 PF13737 Transposase DDE domain E3U36_01090 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3U36_01090 PF01488 Shikimate / quinate 5-dehydrogenase E3U36_01090 PF08501 Shikimate dehydrogenase substrate binding domain E3U36_01095 PF01300 Telomere recombination E3U36_01100 PF01396 Topoisomerase DNA binding C4 zinc finger E3U36_01100 PF01751 Toprim domain E3U36_01100 PF01131 DNA topoisomerase E3U36_01105 PF13737 Transposase DDE domain E3U36_01110 PF01471 Putative peptidoglycan binding domain E3U36_01110 PF03734 L,D-transpeptidase catalytic domain E3U36_01115 PF05951 Bacterial protein of unknown function (DUF882) E3U36_01120 PF00753 Metallo-beta-lactamase superfamily E3U36_01130 PF00267 Gram-negative porin E3U36_01135 PF01336 OB-fold nucleic acid binding domain E3U36_01135 PF00152 tRNA synthetases class II (D, K and N) E3U36_01140 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E3U36_01140 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E3U36_01150 PF01180 Dihydroorotate dehydrogenase E3U36_01155 PF13737 Transposase DDE domain E3U36_01170 PF01340 Met Apo-repressor, MetJ E3U36_01175 PF01197 Ribosomal protein L31 E3U36_01180 PF00270 DEAD/DEAH box helicase E3U36_01180 PF17764 3′ DNA-binding domain (3′BD) E3U36_01180 PF00271 Helicase conserved C-terminal domain E3U36_01180 PF18074 Primosomal protein N C-terminal domain E3U36_01180 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E3U36_01185 PF13737 Transposase DDE domain E3U36_01195 PF05036 Sporulation related domain E3U36_01205 PF10431 C-terminal, D2-small domain, of ClpB protein E3U36_01205 PF07724 AAA domain (Cdc48 subfamily) E3U36_01205 PF00004 ATPase family associated with various cellular activities (AAA) E3U36_01210 PF01040 UbiA prenyltransferase family E3U36_01225 PF06005 Cell division protein ZapB E3U36_01240 PF01501 Glycosyl transferase family 8 E3U36_01240 PF08437 Glycosyl transferase family 8 C-terminal E3U36_01245 PF08437 Glycosyl transferase family 8 C-terminal E3U36_01245 PF01501 Glycosyl transferase family 8 E3U36_01255 PF13439 Glycosyltransferase Family 4 E3U36_01255 PF00534 Glycosyl transferases group 1 E3U36_01265 PF13737 Transposase DDE domain E3U36_01280 PF01323 DSBA-like thioredoxin domain E3U36_01285 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3U36_01285 PF00476 DNA polymerase family A E3U36_01285 PF01367 5'-3' exonuclease, C-terminal SAM fold E3U36_01285 PF01612 3'-5' exonuclease E3U36_01290 PF13737 Transposase DDE domain E3U36_01295 PF01926 50S ribosome-binding GTPase E3U36_01300 PF13737 Transposase DDE domain E3U36_01305 PF00730 HhH-GPD superfamily base excision DNA repair protein E3U36_01305 PF14815 NUDIX domain E3U36_01305 PF00633 Helix-hairpin-helix motif E3U36_01305 PF10576 Iron-sulfur binding domain of endonuclease III E3U36_01310 PF04362 Bacterial Fe(2+) trafficking E3U36_01315 PF01464 Transglycosylase SLT domain E3U36_01315 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain E3U36_01325 PF13979 SopA-like catalytic domain E3U36_01325 PF13981 SopA-like central domain E3U36_01345 PF13737 Transposase DDE domain E3U36_01355 PF13193 AMP-binding enzyme C-terminal domain E3U36_01355 PF00501 AMP-binding enzyme E3U36_01365 PF00814 Glycoprotease family E3U36_01375 PF13737 Transposase DDE domain E3U36_01380 PF00893 Small Multidrug Resistance protein E3U36_01385 PF00893 Small Multidrug Resistance protein E3U36_01390 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain E3U36_01390 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain E3U36_01395 PF01418 Helix-turn-helix domain, rpiR family E3U36_01395 PF01380 SIS domain E3U36_01400 PF13737 Transposase DDE domain E3U36_01405 PF01418 Helix-turn-helix domain, rpiR family E3U36_01405 PF01380 SIS domain E3U36_01425 PF03459 TOBE domain E3U36_01425 PF00005 ABC transporter E3U36_01475 PF01066 CDP-alcohol phosphatidyltransferase E3U36_01480 PF02151 UvrB/uvrC motif E3U36_01480 PF01541 GIY-YIG catalytic domain E3U36_01480 PF08459 UvrC Helix-hairpin-helix N-terminal E3U36_01485 PF00196 Bacterial regulatory proteins, luxR family E3U36_01485 PF00072 Response regulator receiver domain E3U36_01490 PF13737 Transposase DDE domain E3U36_01500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3U36_01500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3U36_01505 PF13737 Transposase DDE domain E3U36_01510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3U36_01510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3U36_01515 PF00462 Glutaredoxin E3U36_01520 PF00929 Exonuclease E3U36_01525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3U36_01530 PF13737 Transposase DDE domain E3U36_01535 PF13737 Transposase DDE domain E3U36_01550 PF00579 tRNA synthetases class I (W and Y) E3U36_01550 PF01479 S4 domain E3U36_01555 PF08543 Phosphomethylpyrimidine kinase E3U36_01565 PF07411 Domain of unknown function (DUF1508) E3U36_01570 PF01556 DnaJ C terminal domain E3U36_01570 PF00684 DnaJ central domain E3U36_01570 PF00226 DnaJ domain E3U36_01575 PF00012 Hsp70 protein E3U36_01580 PF01184 GPR1/FUN34/yaaH family E3U36_01585 PF00994 Probable molybdopterin binding domain E3U36_01590 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3U36_01595 PF03883 Peroxide stress protein YaaA E3U36_01600 PF13737 Transposase DDE domain E3U36_01610 PF08544 GHMP kinases C terminal E3U36_01610 PF00288 GHMP kinases N terminal domain E3U36_01625 PF05981 CreA protein E3U36_01630 PF12833 Helix-turn-helix domain E3U36_01630 PF06445 GyrI-like small molecule binding domain E3U36_01640 PF00300 Histidine phosphatase superfamily (branch 1) E3U36_01650 PF01371 Trp repressor protein E3U36_01670 PF01202 Shikimate kinase E3U36_01695 PF00156 Phosphoribosyl transferase domain E3U36_01700 PF07687 Peptidase dimerisation domain E3U36_01700 PF01546 Peptidase family M20/M25/M40 E3U36_01705 PF11798 IMS family HHH motif E3U36_01705 PF11799 impB/mucB/samB family C-terminal domain E3U36_01705 PF00817 impB/mucB/samB family E3U36_01710 PF13737 Transposase DDE domain E3U36_01715 PF00460 Flagella basal body rod protein E3U36_01720 PF17656 FlgA N-terminal domain E3U36_01720 PF13144 Chaperone for flagella basal body P-ring formation E3U36_01730 PF05130 FlgN protein E3U36_01750 PF13677 Membrane MotB of proton-channel complex MotA/MotB E3U36_01750 PF00691 OmpA family E3U36_01755 PF01618 MotA/TolQ/ExbB proton channel family E3U36_01760 PF05280 Flagellar transcriptional activator (FlhC) E3U36_01770 PF13737 Transposase DDE domain E3U36_01780 PF00474 Sodium:solute symporter family E3U36_01790 PF02899 Phage integrase, N-terminal SAM-like domain E3U36_01795 PF04539 Sigma-70 region 3 E3U36_01795 PF04542 Sigma-70 region 2 E3U36_01795 PF04545 Sigma-70, region 4 E3U36_01800 PF00700 Bacterial flagellin C-terminal helical region E3U36_01800 PF08884 Flagellin D3 domain E3U36_01800 PF00669 Bacterial flagellin N-terminal helical region E3U36_01810 PF02465 Flagellar hook-associated protein 2 N-terminus E3U36_01810 PF07196 Flagellin hook IN motif E3U36_01810 PF07195 Flagellar hook-associated protein 2 C-terminus E3U36_01815 PF07195 Flagellar hook-associated protein 2 C-terminus E3U36_01815 PF07196 Flagellin hook IN motif E3U36_01815 PF02465 Flagellar hook-associated protein 2 N-terminus E3U36_01820 PF02561 Flagellar protein FliS E3U36_01835 PF02120 Flagellar hook-length control protein FliK E3U36_01855 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3U36_01855 PF16973 Flagellar motor switch protein FliN N-terminal E3U36_01860 PF04347 Flagellar biosynthesis protein, FliO E3U36_01870 PF01313 Bacterial export proteins, family 3 E3U36_01875 PF01311 Bacterial export proteins, family 1 E3U36_01880 PF13737 Transposase DDE domain E3U36_01885 PF00465 Iron-containing alcohol dehydrogenase E3U36_01890 PF01370 NAD dependent epimerase/dehydratase family E3U36_01900 PF13737 Transposase DDE domain E3U36_01905 PF13525 Outer membrane lipoprotein E3U36_01910 PF01479 S4 domain E3U36_01910 PF00849 RNA pseudouridylate synthase E3U36_01920 PF02861 Clp amino terminal domain, pathogenicity island component E3U36_01920 PF17871 AAA lid domain E3U36_01920 PF10431 C-terminal, D2-small domain, of ClpB protein E3U36_01920 PF00004 ATPase family associated with various cellular activities (AAA) E3U36_01920 PF07724 AAA domain (Cdc48 subfamily) E3U36_01950 PF01565 FAD binding domain E3U36_01950 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E3U36_01955 PF08279 HTH domain E3U36_01955 PF03099 Biotin/lipoate A/B protein ligase family E3U36_01955 PF02237 Biotin protein ligase C terminal domain E3U36_01960 PF00485 Phosphoribulokinase / Uridine kinase family E3U36_01985 PF03144 Elongation factor Tu domain 2 E3U36_01985 PF03143 Elongation factor Tu C-terminal domain E3U36_01985 PF00009 Elongation factor Tu GTP binding domain E3U36_01990 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E3U36_01995 PF02357 Transcription termination factor nusG E3U36_01995 PF00467 KOW motif E3U36_02000 PF00298 Ribosomal protein L11, RNA binding domain E3U36_02000 PF03946 Ribosomal protein L11, N-terminal domain E3U36_02005 PF00687 Ribosomal protein L1p/L10e family E3U36_02010 PF00466 Ribosomal protein L10 E3U36_02015 PF16320 Ribosomal protein L7/L12 dimerisation domain E3U36_02015 PF00542 Ribosomal protein L7/L12 C-terminal domain E3U36_02020 PF04563 RNA polymerase beta subunit E3U36_02020 PF10385 RNA polymerase beta subunit external 1 domain E3U36_02020 PF04561 RNA polymerase Rpb2, domain 2 E3U36_02020 PF04560 RNA polymerase Rpb2, domain 7 E3U36_02020 PF00562 RNA polymerase Rpb2, domain 6 E3U36_02020 PF04565 RNA polymerase Rpb2, domain 3 E3U36_02025 PF04997 RNA polymerase Rpb1, domain 1 E3U36_02025 PF00623 RNA polymerase Rpb1, domain 2 E3U36_02025 PF04983 RNA polymerase Rpb1, domain 3 E3U36_02025 PF05000 RNA polymerase Rpb1, domain 4 E3U36_02025 PF04998 RNA polymerase Rpb1, domain 5 E3U36_02040 PF05690 Thiazole biosynthesis protein ThiG E3U36_02055 PF02581 Thiamine monophosphate synthase E3U36_02065 PF09297 NADH pyrophosphatase zinc ribbon domain E3U36_02065 PF00293 NUDIX domain E3U36_02070 PF01208 Uroporphyrinogen decarboxylase (URO-D) E3U36_02075 PF13737 Transposase DDE domain E3U36_02085 PF13737 Transposase DDE domain E3U36_02095 PF00072 Response regulator receiver domain E3U36_02095 PF00486 Transcriptional regulatory protein, C terminal E3U36_02105 PF05525 Branched-chain amino acid transport protein E3U36_02110 PF04336 Acyl carrier protein phosphodiesterase E3U36_02115 PF02547 Queuosine biosynthesis protein E3U36_02120 PF01702 Queuine tRNA-ribosyltransferase E3U36_02125 PF02699 Preprotein translocase subunit E3U36_02130 PF07549 SecD/SecF GG Motif E3U36_02130 PF02355 Protein export membrane protein E3U36_02130 PF13721 SecD export protein N-terminal TM region E3U36_02135 PF02355 Protein export membrane protein E3U36_02135 PF07549 SecD/SecF GG Motif E3U36_02140 PF03477 ATP cone domain E3U36_02145 PF01872 RibD C-terminal domain E3U36_02145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3U36_02150 PF00885 6,7-dimethyl-8-ribityllumazine synthase E3U36_02155 PF01029 NusB family E3U36_02160 PF00586 AIR synthase related protein, N-terminal domain E3U36_02160 PF02769 AIR synthase related protein, C-terminal domain E3U36_02165 PF04608 Phosphatidylglycerophosphatase A E3U36_02170 PF02779 Transketolase, pyrimidine binding domain E3U36_02170 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3U36_02170 PF02780 Transketolase, C-terminal domain E3U36_02175 PF00348 Polyprenyl synthetase E3U36_02185 PF02568 Thiamine biosynthesis protein (ThiI) E3U36_02185 PF02926 THUMP domain E3U36_02195 PF04461 Protein of unknown function (DUF520) E3U36_02205 PF01040 UbiA prenyltransferase family E3U36_02210 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E3U36_02215 PF00510 Cytochrome c oxidase subunit III E3U36_02220 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3U36_02225 PF06481 COX Aromatic Rich Motif E3U36_02225 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E3U36_02245 PF01804 Penicillin amidase E3U36_02250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3U36_02250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3U36_02250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3U36_02250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3U36_02255 PF03925 SeqA protein C-terminal domain E3U36_02255 PF17206 SeqA protein N-terminal domain E3U36_02265 PF04320 Protein with unknown function (DUF469) E3U36_02270 PF02390 Putative methyltransferase E3U36_02295 PF16916 Dimerisation domain of Zinc Transporter E3U36_02295 PF01545 Cation efflux family E3U36_02300 PF13737 Transposase DDE domain E3U36_02305 PF16363 GDP-mannose 4,6 dehydratase E3U36_02310 PF13737 Transposase DDE domain E3U36_02315 PF02481 DNA recombination-mediator protein A E3U36_02315 PF17782 DprA winged helix domain E3U36_02325 PF01327 Polypeptide deformylase E3U36_02330 PF02911 Formyl transferase, C-terminal domain E3U36_02330 PF00551 Formyl transferase E3U36_02335 PF01029 NusB family E3U36_02335 PF01189 16S rRNA methyltransferase RsmB/F E3U36_02340 PF02080 TrkA-C domain E3U36_02340 PF02254 TrkA-N domain E3U36_02345 PF01741 Large-conductance mechanosensitive channel, MscL E3U36_02350 PF03889 Alternative ribosome-rescue factor A E3U36_02355 PF13411 MerR HTH family regulatory protein E3U36_02360 PF01196 Ribosomal protein L17 E3U36_02365 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3U36_02365 PF01000 RNA polymerase Rpb3/RpoA insert domain E3U36_02365 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3U36_02370 PF01479 S4 domain E3U36_02370 PF00163 Ribosomal protein S4/S9 N-terminal domain E3U36_02375 PF00411 Ribosomal protein S11 E3U36_02380 PF00416 Ribosomal protein S13/S18 E3U36_02385 PF00444 Ribosomal protein L36 E3U36_02390 PF00344 SecY translocase E3U36_02395 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E3U36_02400 PF00327 Ribosomal protein L30p/L7e E3U36_02405 PF00333 Ribosomal protein S5, N-terminal domain E3U36_02405 PF03719 Ribosomal protein S5, C-terminal domain E3U36_02410 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E3U36_02415 PF00347 Ribosomal protein L6 E3U36_02420 PF00410 Ribosomal protein S8 E3U36_02425 PF00253 Ribosomal protein S14p/S29e E3U36_02430 PF00281 Ribosomal protein L5 E3U36_02430 PF00673 ribosomal L5P family C-terminus E3U36_02435 PF00467 KOW motif E3U36_02435 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E3U36_02440 PF00238 Ribosomal protein L14p/L23e E3U36_02445 PF00366 Ribosomal protein S17 E3U36_02450 PF00831 Ribosomal L29 protein E3U36_02455 PF00252 Ribosomal protein L16p/L10e E3U36_02460 PF07650 KH domain E3U36_02460 PF00189 Ribosomal protein S3, C-terminal domain E3U36_02465 PF00237 Ribosomal protein L22p/L17e E3U36_02470 PF00203 Ribosomal protein S19 E3U36_02475 PF00181 Ribosomal Proteins L2, RNA binding domain E3U36_02475 PF03947 Ribosomal Proteins L2, C-terminal domain E3U36_02480 PF00276 Ribosomal protein L23 E3U36_02485 PF00573 Ribosomal protein L4/L1 family E3U36_02490 PF00297 Ribosomal protein L3 E3U36_02495 PF00338 Ribosomal protein S10p/S20e E3U36_02500 PF00210 Ferritin-like domain E3U36_02510 PF03143 Elongation factor Tu C-terminal domain E3U36_02510 PF03144 Elongation factor Tu domain 2 E3U36_02510 PF00009 Elongation factor Tu GTP binding domain E3U36_02515 PF00679 Elongation factor G C-terminus E3U36_02515 PF00009 Elongation factor Tu GTP binding domain E3U36_02515 PF03144 Elongation factor Tu domain 2 E3U36_02515 PF03764 Elongation factor G, domain IV E3U36_02515 PF14492 Elongation Factor G, domain II E3U36_02520 PF00177 Ribosomal protein S7p/S5e E3U36_02525 PF00164 Ribosomal protein S12/S23 E3U36_02530 PF04077 DsrH like protein E3U36_02535 PF02635 DsrE/DsrF-like family E3U36_02540 PF02635 DsrE/DsrF-like family E3U36_02545 PF13309 HTH domain E3U36_02545 PF08348 YheO-like PAS domain E3U36_02550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3U36_02550 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3U36_02555 PF13737 Transposase DDE domain E3U36_02665 PF00959 Phage lysozyme E3U36_02680 PF13737 Transposase DDE domain E3U36_02695 PF01695 IstB-like ATP binding protein E3U36_02785 PF13737 Transposase DDE domain E3U36_02790 PF01510 N-acetylmuramoyl-L-alanine amidase E3U36_02820 PF00005 ABC transporter E3U36_02825 PF00005 ABC transporter E3U36_02835 PF13737 Transposase DDE domain E3U36_02840 PF04381 Putative exonuclease, RdgC E3U36_02845 PF13737 Transposase DDE domain E3U36_02880 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3U36_02890 PF12843 Putative quorum-sensing-regulated virulence factor E3U36_02900 PF13737 Transposase DDE domain E3U36_02905 PF01773 Na+ dependent nucleoside transporter N-terminus E3U36_02905 PF07670 Nucleoside recognition E3U36_02905 PF07662 Na+ dependent nucleoside transporter C-terminus E3U36_02910 PF03120 NAD-dependent DNA ligase OB-fold domain E3U36_02910 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E3U36_02910 PF00533 BRCA1 C Terminus (BRCT) domain E3U36_02910 PF01653 NAD-dependent DNA ligase adenylation domain E3U36_02910 PF12826 Helix-hairpin-helix motif E3U36_02915 PF04354 ZipA, C-terminal FtsZ-binding domain E3U36_02925 PF00291 Pyridoxal-phosphate dependent enzyme E3U36_02930 PF00381 PTS HPr component phosphorylation site E3U36_02935 PF02896 PEP-utilising enzyme, TIM barrel domain E3U36_02935 PF05524 PEP-utilising enzyme, N-terminal E3U36_02935 PF00391 PEP-utilising enzyme, mobile domain E3U36_02940 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3U36_02960 PF01218 Coproporphyrinogen III oxidase E3U36_02965 PF01926 50S ribosome-binding GTPase E3U36_02965 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3U36_02970 PF13360 PQQ-like domain E3U36_02975 PF09976 Tetratricopeptide repeat-like domain E3U36_02980 PF13393 Histidyl-tRNA synthetase E3U36_02980 PF03129 Anticodon binding domain E3U36_02985 PF04551 GcpE protein E3U36_02990 PF13464 Domain of unknown function (DUF4115) E3U36_03005 PF00334 Nucleoside diphosphate kinase E3U36_03010 PF13737 Transposase DDE domain E3U36_03020 PF12404 Peptidase E3U36_03020 PF00883 Cytosol aminopeptidase family, catalytic domain E3U36_03025 PF04384 Iron-sulphur cluster assembly E3U36_03030 PF00111 2Fe-2S iron-sulfur cluster binding domain E3U36_03040 PF03710 Glutamate-ammonia ligase adenylyltransferase E3U36_03040 PF08335 GlnD PII-uridylyltransferase E3U36_03050 PF08239 Bacterial SH3 domain E3U36_03055 PF12627 Probable RNA and SrmB- binding site of polymerase A E3U36_03055 PF01743 Poly A polymerase head domain E3U36_03055 PF01966 HD domain E3U36_03060 PF02152 Dihydroneopterin aldolase E3U36_03065 PF02660 Glycerol-3-phosphate acyltransferase E3U36_03070 PF00814 Glycoprotease family E3U36_03075 PF01165 Ribosomal protein S21 E3U36_03080 PF01807 CHC2 zinc finger E3U36_03080 PF10410 DnaB-helicase binding domain of primase E3U36_03080 PF08275 DNA primase catalytic core, N-terminal domain E3U36_03080 PF08278 DNA primase DnaG DnaB-binding E3U36_03085 PF04546 Sigma-70, non-essential region E3U36_03085 PF03979 Sigma-70 factor, region 1.1 E3U36_03085 PF00140 Sigma-70 factor, region 1.2 E3U36_03085 PF04542 Sigma-70 region 2 E3U36_03085 PF04539 Sigma-70 region 3 E3U36_03085 PF04545 Sigma-70, region 4 E3U36_03095 PF13737 Transposase DDE domain E3U36_03100 PF01435 Peptidase family M48 E3U36_03105 PF10769 Protein of unknown function (DUF2594) E3U36_03110 PF13737 Transposase DDE domain E3U36_03125 PF06738 Putative threonine/serine exporter E3U36_03130 PF12821 Threonine/Serine exporter, ThrE E3U36_03140 PF04231 Endonuclease I E3U36_03155 PF06071 Protein of unknown function (DUF933) E3U36_03155 PF01926 50S ribosome-binding GTPase E3U36_03160 PF01195 Peptidyl-tRNA hydrolase E3U36_03170 PF14572 Phosphoribosyl synthetase-associated domain E3U36_03170 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E3U36_03175 PF08544 GHMP kinases C terminal E3U36_03175 PF00288 GHMP kinases N terminal domain E3U36_03180 PF03550 Outer membrane lipoprotein LolB E3U36_03185 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E3U36_03185 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E3U36_03185 PF01488 Shikimate / quinate 5-dehydrogenase E3U36_03190 PF03462 PCRF domain E3U36_03190 PF00472 RF-1 domain E3U36_03195 PF13847 Methyltransferase domain E3U36_03195 PF17827 PrmC N-terminal domain E3U36_03200 PF13369 Transglutaminase-like superfamily E3U36_03205 PF00793 DAHP synthetase I family E3U36_03210 PF16199 Radical_SAM C-terminal domain E3U36_03210 PF04055 Radical SAM superfamily E3U36_03220 PF02613 Nitrate reductase delta subunit E3U36_03225 PF07273 Protein of unknown function (DUF1439) E3U36_03250 PF13737 Transposase DDE domain E3U36_03260 PF03023 Lipid II flippase MurJ E3U36_03270 PF01554 MatE E3U36_03275 PF00677 Lumazine binding domain E3U36_03295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3U36_03295 PF03466 LysR substrate binding domain E3U36_03300 PF00356 Bacterial regulatory proteins, lacI family E3U36_03305 PF03485 Arginyl tRNA synthetase N terminal domain E3U36_03305 PF00750 tRNA synthetases class I (R) E3U36_03305 PF05746 DALR anticodon binding domain E3U36_03315 PF08003 Protein of unknown function (DUF1698) E3U36_03320 PF13649 Methyltransferase domain E3U36_03325 PF01124 MAPEG family E3U36_03330 PF02938 GAD domain E3U36_03330 PF01336 OB-fold nucleic acid binding domain E3U36_03330 PF00152 tRNA synthetases class II (D, K and N) E3U36_03335 PF00293 NUDIX domain E3U36_03340 PF01709 Transcriptional regulator E3U36_03345 PF02075 Crossover junction endodeoxyribonuclease RuvC E3U36_03350 PF07499 RuvA, C-terminal domain E3U36_03350 PF01330 RuvA N terminal domain E3U36_03355 PF17864 RuvB AAA lid domain E3U36_03355 PF05496 Holliday junction DNA helicase RuvB P-loop domain E3U36_03355 PF05491 RuvB C-terminal winged helix domain E3U36_03360 PF13737 Transposase DDE domain E3U36_03370 PF10725 Protein of unknown function (DUF2517) E3U36_03375 PF01784 NIF3 (NGG1p interacting factor 3) E3U36_03390 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3U36_03400 PF13085 2Fe-2S iron-sulfur cluster binding domain E3U36_03405 PF00676 Dehydrogenase E1 component E3U36_03405 PF16870 2-oxoglutarate dehydrogenase C-terminal E3U36_03405 PF02779 Transketolase, pyrimidine binding domain E3U36_03405 PF16078 2-oxoglutarate dehydrogenase N-terminus E3U36_03410 PF00364 Biotin-requiring enzyme E3U36_03410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3U36_03410 PF02817 e3 binding domain E3U36_03415 PF08442 ATP-grasp domain E3U36_03415 PF00549 CoA-ligase E3U36_03420 PF02629 CoA binding domain E3U36_03420 PF00549 CoA-ligase E3U36_03425 PF01654 Cytochrome bd terminal oxidase subunit I E3U36_03430 PF02322 Cytochrome bd terminal oxidase subunit II E3U36_03435 PF08173 Membrane bound YbgT-like protein E3U36_03450 PF01618 MotA/TolQ/ExbB proton channel family E3U36_03455 PF02472 Biopolymer transport protein ExbD/TolR E3U36_03460 PF06519 TolA C-terminal E3U36_03465 PF07676 WD40-like Beta Propeller Repeat E3U36_03465 PF04052 TolB amino-terminal domain E3U36_03470 PF00691 OmpA family E3U36_03475 PF13174 Tetratricopeptide repeat E3U36_03475 PF16331 TolA binding protein trimerisation E3U36_03490 PF02445 Quinolinate synthetase A protein E3U36_03495 PF04973 Nicotinamide mononucleotide transporter E3U36_03510 PF00300 Histidine phosphatase superfamily (branch 1) E3U36_03520 PF13737 Transposase DDE domain E3U36_03525 PF13737 Transposase DDE domain E3U36_03530 PF18807 Tripartite Tc toxins repeat E3U36_03530 PF14431 YwqJ-like deaminase E3U36_03535 PF04972 BON domain E3U36_03540 PF13580 SIS domain E3U36_03545 PF02021 Uncharacterised protein family UPF0102 E3U36_03555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3U36_03620 PF07681 DoxX E3U36_03640 PF09335 SNARE associated Golgi protein E3U36_03645 PF03741 Integral membrane protein TerC family E3U36_03650 PF00589 Phage integrase family E3U36_03660 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E3U36_03660 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E3U36_03685 PF13737 Transposase DDE domain E3U36_03690 PF01327 Polypeptide deformylase E3U36_03695 PF13737 Transposase DDE domain E3U36_03700 PF01406 tRNA synthetases class I (C) catalytic domain E3U36_03700 PF09190 DALR domain E3U36_03705 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3U36_03710 PF00149 Calcineurin-like phosphoesterase E3U36_03730 PF00106 short chain dehydrogenase E3U36_03735 PF00085 Thioredoxin E3U36_03750 PF13411 MerR HTH family regulatory protein E3U36_03755 PF00403 Heavy-metal-associated domain E3U36_03760 PF01963 TraB family E3U36_03765 PF04073 Aminoacyl-tRNA editing domain E3U36_03780 PF02683 Cytochrome C biogenesis protein transmembrane region E3U36_03780 PF13098 Thioredoxin-like domain E3U36_03780 PF11412 Disulphide bond corrector protein DsbC E3U36_03785 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3U36_03790 PF00206 Lyase E3U36_03790 PF10415 Fumarase C C-terminus E3U36_03795 PF04186 FxsA cytoplasmic membrane protein E3U36_03800 PF00166 Chaperonin 10 Kd subunit E3U36_03805 PF00118 TCP-1/cpn60 chaperonin family E3U36_03815 PF04055 Radical SAM superfamily E3U36_03820 PF01132 Elongation factor P (EF-P) OB domain E3U36_03820 PF08207 Elongation factor P (EF-P) KOW-like domain E3U36_03820 PF09285 Elongation factor P, C-terminal E3U36_03840 PF09013 YopH, N-terminal E3U36_03840 PF00102 Protein-tyrosine phosphatase E3U36_03845 PF13737 Transposase DDE domain E3U36_03850 PF13737 Transposase DDE domain E3U36_03860 PF10396 GTP-binding protein TrmE N-terminus E3U36_03860 PF01926 50S ribosome-binding GTPase E3U36_03860 PF12631 MnmE helical domain E3U36_03865 PF14849 YidC periplasmic domain E3U36_03865 PF02096 60Kd inner membrane protein E3U36_03870 PF01809 Putative membrane protein insertion efficiency factor E3U36_03875 PF00825 Ribonuclease P E3U36_03880 PF00468 Ribosomal protein L34 E3U36_03885 PF08299 Bacterial dnaA protein helix-turn-helix E3U36_03885 PF11638 DnaA N-terminal domain E3U36_03885 PF00308 Bacterial dnaA protein E3U36_03890 PF02767 DNA polymerase III beta subunit, central domain E3U36_03890 PF02768 DNA polymerase III beta subunit, C-terminal domain E3U36_03890 PF00712 DNA polymerase III beta subunit, N-terminal domain E3U36_03900 PF00986 DNA gyrase B subunit, carboxyl terminus E3U36_03900 PF18053 DNA gyrase B subunit insert domain E3U36_03900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3U36_03900 PF01751 Toprim domain E3U36_03900 PF00204 DNA gyrase B E3U36_03905 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3U36_03905 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3U36_03915 PF01380 SIS domain E3U36_03920 PF12804 MobA-like NTP transferase domain E3U36_03920 PF00132 Bacterial transferase hexapeptide (six repeats) E3U36_03925 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E3U36_03925 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain E3U36_03930 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3U36_03930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3U36_03935 PF00231 ATP synthase E3U36_03940 PF00306 ATP synthase alpha/beta chain, C terminal domain E3U36_03940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3U36_03940 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3U36_03945 PF00213 ATP synthase delta (OSCP) subunit E3U36_03950 PF00430 ATP synthase B/B' CF(0) E3U36_03955 PF00137 ATP synthase subunit C E3U36_03960 PF00119 ATP synthase A chain E3U36_03965 PF03899 ATP synthase I chain E3U36_03985 PF13737 Transposase DDE domain E3U36_03990 PF13932 GidA associated domain E3U36_03990 PF01134 Glucose inhibited division protein A E3U36_03995 PF00258 Flavodoxin E3U36_04000 PF01037 Lrp/AsnC ligand binding domain E3U36_04005 PF03590 Aspartate-ammonia ligase E3U36_04015 PF13737 Transposase DDE domain E3U36_04055 PF03466 LysR substrate binding domain E3U36_04055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3U36_04060 PF04219 Protein of unknown function, DUF E3U36_04070 PF08046 IlvGEDA operon leader peptide E3U36_04075 PF00205 Thiamine pyrophosphate enzyme, central domain E3U36_04075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3U36_04075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3U36_04080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3U36_04105 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E3U36_04105 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E3U36_04110 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) E3U36_04110 PF00413 Matrixin E3U36_04110 PF08548 Peptidase M10 serralysin C terminal E3U36_04120 PF13361 UvrD-like helicase C-terminal domain E3U36_04120 PF00580 UvrD/REP helicase N-terminal domain E3U36_04125 PF02541 Ppx/GppA phosphatase family E3U36_04130 PF00270 DEAD/DEAH box helicase E3U36_04130 PF00271 Helicase conserved C-terminal domain E3U36_04135 PF00085 Thioredoxin E3U36_04140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3U36_04140 PF07498 Rho termination factor, N-terminal domain E3U36_04140 PF07497 Rho termination factor, RNA-binding domain E3U36_04145 PF00953 Glycosyl transferase family 4 E3U36_04150 PF02706 Chain length determinant protein E3U36_04155 PF02350 UDP-N-acetylglucosamine 2-epimerase E3U36_04160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3U36_04160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3U36_04160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3U36_04165 PF16363 GDP-mannose 4,6 dehydratase E3U36_04170 PF00483 Nucleotidyl transferase E3U36_04180 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3U36_04185 PF01943 Polysaccharide biosynthesis protein E3U36_04190 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 E3U36_04195 PF06899 WzyE protein, O-antigen assembly polymerase E3U36_04200 PF03808 Glycosyl transferase WecB/TagA/CpsF family E3U36_04205 PF00324 Amino acid permease E3U36_04230 PF07719 Tetratricopeptide repeat E3U36_04230 PF07219 HemY protein N-terminus E3U36_04235 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase E3U36_04240 PF02602 Uroporphyrinogen-III synthase HemD E3U36_04245 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E3U36_04245 PF03900 Porphobilinogen deaminase, C-terminal domain E3U36_04250 PF12633 Adenylate cyclase NT domain E3U36_04250 PF01295 Adenylate cyclase, class-I E3U36_04255 PF01491 Frataxin-like domain E3U36_04265 PF01678 Diaminopimelate epimerase E3U36_04270 PF04340 Protein of unknown function, DUF484 E3U36_04275 PF00589 Phage integrase family E3U36_04275 PF02899 Phage integrase, N-terminal SAM-like domain E3U36_04280 PF13419 Haloacid dehalogenase-like hydrolase E3U36_04285 PF00580 UvrD/REP helicase N-terminal domain E3U36_04285 PF13361 UvrD-like helicase C-terminal domain E3U36_04295 PF13737 Transposase DDE domain E3U36_04310 PF00570 HRDC domain E3U36_04310 PF00271 Helicase conserved C-terminal domain E3U36_04310 PF00270 DEAD/DEAH box helicase E3U36_04310 PF09382 RQC domain E3U36_04310 PF16124 RecQ zinc-binding E3U36_04315 PF13737 Transposase DDE domain E3U36_04320 PF00570 HRDC domain E3U36_04320 PF16124 RecQ zinc-binding E3U36_04320 PF00270 DEAD/DEAH box helicase E3U36_04320 PF00271 Helicase conserved C-terminal domain E3U36_04320 PF09382 RQC domain E3U36_04325 PF12146 Serine aminopeptidase, S33 E3U36_04335 PF13737 Transposase DDE domain E3U36_04340 PF02753 Pili assembly chaperone PapD, C-terminal domain E3U36_04340 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3U36_04345 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain E3U36_04345 PF00730 HhH-GPD superfamily base excision DNA repair protein E3U36_04350 PF07979 Intimin C-type lectin domain E3U36_04350 PF11924 Inverse autotransporter, beta-domain E3U36_04350 PF09134 Invasin, domain 3 E3U36_04350 PF02369 Bacterial Ig-like domain (group 1) E3U36_04355 PF02369 Bacterial Ig-like domain (group 1) E3U36_04355 PF01476 LysM domain E3U36_04355 PF11924 Inverse autotransporter, beta-domain E3U36_04355 PF02368 Bacterial Ig-like domain (group 2) E3U36_04355 PF07979 Intimin C-type lectin domain E3U36_04360 PF00121 Triosephosphate isomerase E3U36_04365 PF07305 Protein of unknown function (DUF1454) E3U36_04375 PF00970 Oxidoreductase FAD-binding domain E3U36_04375 PF00175 Oxidoreductase NAD-binding domain E3U36_04380 PF07690 Major Facilitator Superfamily E3U36_04405 PF13737 Transposase DDE domain E3U36_04410 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3U36_04410 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3U36_04410 PF06827 Zinc finger found in FPG and IleRS E3U36_04415 PF01467 Cytidylyltransferase-like E3U36_04420 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E3U36_04430 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3U36_04435 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3U36_04440 PF01370 NAD dependent epimerase/dehydratase family E3U36_04445 PF04748 Divergent polysaccharide deacetylase E3U36_04450 PF01551 Peptidase family M23 E3U36_04455 PF00581 Rhodanese-like domain E3U36_04460 PF02556 Preprotein translocase subunit SecB E3U36_04465 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E3U36_04465 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E3U36_04475 PF00588 SpoU rRNA Methylase family E3U36_04485 PF13737 Transposase DDE domain E3U36_04495 PF16527 Two-component sensor protein CpxA, periplasmic domain E3U36_04495 PF00672 HAMP domain E3U36_04495 PF00512 His Kinase A (phospho-acceptor) domain E3U36_04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3U36_04500 PF00072 Response regulator receiver domain E3U36_04500 PF00486 Transcriptional regulatory protein, C terminal E3U36_04505 PF07813 LTXXQ motif family protein E3U36_04510 PF13737 Transposase DDE domain E3U36_04650 PF13737 Transposase DDE domain E3U36_04660 PF00575 S1 RNA binding domain E3U36_04660 PF12111 Polyribonucleotide phosphorylase C terminal E3U36_04660 PF10150 Ribonuclease E/G family E3U36_04665 PF01479 S4 domain E3U36_04665 PF00849 RNA pseudouridylate synthase E3U36_04670 PF02545 Maf-like protein E3U36_04680 PF01783 Ribosomal L32p protein family E3U36_04685 PF02504 Fatty acid synthesis protein E3U36_04690 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3U36_04690 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3U36_04695 PF00698 Acyl transferase domain E3U36_04705 PF00550 Phosphopantetheine attachment site E3U36_04710 PF02801 Beta-ketoacyl synthase, C-terminal domain E3U36_04710 PF00109 Beta-ketoacyl synthase, N-terminal domain E3U36_04715 PF01063 Amino-transferase class IV E3U36_04720 PF02618 YceG-like family E3U36_04725 PF02223 Thymidylate kinase E3U36_04730 PF09115 DNA polymerase III, delta subunit, C terminal E3U36_04735 PF01026 TatD related DNase E3U36_04740 PF01230 HIT domain E3U36_04745 PF13036 Peptidoglycan-synthase activator LpoB E3U36_04750 PF01636 Phosphotransferase enzyme family E3U36_04775 PF13737 Transposase DDE domain E3U36_04780 PF02976 DNA mismatch repair enzyme MutH E3U36_04790 PF00491 Arginase family E3U36_04805 PF00438 S-adenosylmethionine synthetase, N-terminal domain E3U36_04805 PF02773 S-adenosylmethionine synthetase, C-terminal domain E3U36_04805 PF02772 S-adenosylmethionine synthetase, central domain E3U36_04810 PF10263 SprT-like family E3U36_04810 PF17283 SprT-like zinc ribbon domain E3U36_04820 PF13737 Transposase DDE domain E3U36_04825 PF00267 Gram-negative porin E3U36_04830 PF13737 Transposase DDE domain E3U36_04850 PF01520 N-acetylmuramoyl-L-alanine amidase E3U36_04850 PF11741 AMIN domain E3U36_04860 PF00899 ThiF family E3U36_04865 PF00266 Aminotransferase class-V E3U36_04870 PF00266 Aminotransferase class-V E3U36_04875 PF00266 Aminotransferase class-V E3U36_04880 PF13737 Transposase DDE domain E3U36_04885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3U36_04885 PF00381 PTS HPr component phosphorylation site E3U36_04890 PF00294 pfkB family carbohydrate kinase E3U36_04900 PF13737 Transposase DDE domain E3U36_04905 PF14338 Mrr N-terminal domain E3U36_04905 PF04471 Restriction endonuclease E3U36_04930 PF13737 Transposase DDE domain E3U36_04940 PF12161 HsdM N-terminal domain E3U36_04940 PF02384 N-6 DNA Methylase E3U36_04990 PF16535 Type III cell invasion protein SipB E3U36_04990 PF04888 Secretion system effector C (SseC) like family E3U36_05015 PF13737 Transposase DDE domain E3U36_05025 PF00348 Polyprenyl synthetase E3U36_05030 PF00829 Ribosomal prokaryotic L21 protein E3U36_05035 PF01016 Ribosomal L27 protein E3U36_05040 PF01926 50S ribosome-binding GTPase E3U36_05040 PF01018 GTP1/OBG E3U36_05045 PF01272 Transcription elongation factor, GreA/GreB, C-term E3U36_05045 PF03449 Transcription elongation factor, N-terminal E3U36_05050 PF01985 CRS1 / YhbY (CRM) domain E3U36_05055 PF01728 FtsJ-like methyltransferase E3U36_05060 PF06480 FtsH Extracellular E3U36_05060 PF00004 ATPase family associated with various cellular activities (AAA) E3U36_05060 PF01434 Peptidase family M41 E3U36_05060 PF17862 AAA+ lid domain E3U36_05065 PF00809 Pterin binding enzyme E3U36_05070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3U36_05070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3U36_05070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3U36_05070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3U36_05075 PF03840 Preprotein translocase SecG subunit E3U36_05095 PF17384 RimP C-terminal SH3 domain E3U36_05095 PF02576 RimP N-terminal domain E3U36_05100 PF13184 NusA-like KH domain E3U36_05100 PF08529 NusA N-terminal domain E3U36_05100 PF00575 S1 RNA binding domain E3U36_05105 PF04760 Translation initiation factor IF-2, N-terminal region E3U36_05105 PF08364 Bacterial translation initiation factor IF-2 associated region E3U36_05105 PF00009 Elongation factor Tu GTP binding domain E3U36_05105 PF11987 Translation-initiation factor 2 E3U36_05105 PF03144 Elongation factor Tu domain 2 E3U36_05110 PF02033 Ribosome-binding factor A E3U36_05115 PF09157 Pseudouridine synthase II TruB, C-terminal E3U36_05115 PF01509 TruB family pseudouridylate synthase (N terminal domain) E3U36_05115 PF16198 tRNA pseudouridylate synthase B C-terminal domain E3U36_05120 PF00312 Ribosomal protein S15 E3U36_05125 PF00013 KH domain E3U36_05125 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E3U36_05125 PF01138 3' exoribonuclease family, domain 1 E3U36_05125 PF03725 3' exoribonuclease family, domain 2 E3U36_05125 PF00575 S1 RNA binding domain E3U36_05130 PF13181 Tetratricopeptide repeat E3U36_05130 PF07719 Tetratricopeptide repeat E3U36_05140 PF00271 Helicase conserved C-terminal domain E3U36_05140 PF12343 Cold shock protein DEAD box A E3U36_05140 PF00270 DEAD/DEAH box helicase E3U36_05140 PF03880 DbpA RNA binding domain E3U36_05170 PF01136 Peptidase family U32 E3U36_05185 PF13508 Acetyltransferase (GNAT) domain E3U36_05215 PF01042 Endoribonuclease L-PSP E3U36_05220 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain E3U36_05220 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain E3U36_05225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3U36_05225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3U36_05230 PF06877 Regulator of ribonuclease activity B E3U36_05235 PF00133 tRNA synthetases class I (I, L, M and V) E3U36_05235 PF10458 Valyl tRNA synthetase tRNA binding arm E3U36_05235 PF08264 Anticodon-binding domain of tRNA E3U36_05240 PF04364 DNA polymerase III chi subunit, HolC E3U36_05245 PF00883 Cytosol aminopeptidase family, catalytic domain E3U36_05245 PF02789 Cytosol aminopeptidase family, N-terminal domain E3U36_05250 PF03739 Lipopolysaccharide export system permease LptF/LptG E3U36_05255 PF03739 Lipopolysaccharide export system permease LptF/LptG E3U36_05260 PF00144 Beta-lactamase E3U36_05280 PF13693 Winged helix-turn-helix DNA-binding E3U36_05285 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E3U36_05285 PF00056 lactate/malate dehydrogenase, NAD binding domain E3U36_05290 PF02863 Arginine repressor, C-terminal domain E3U36_05290 PF01316 Arginine repressor, DNA binding domain E3U36_05300 PF13737 Transposase DDE domain E3U36_05310 PF00308 Bacterial dnaA protein E3U36_05320 PF07720 Tetratricopeptide repeat E3U36_05320 PF01435 Peptidase family M48 E3U36_05325 PF01594 AI-2E family transporter E3U36_05330 PF00578 AhpC/TSA family E3U36_05335 PF13737 Transposase DDE domain E3U36_05345 PF00701 Dihydrodipicolinate synthetase family E3U36_05350 PF06804 NlpB/DapX lipoprotein E3U36_05360 PF13737 Transposase DDE domain E3U36_05370 PF04284 Protein of unknown function (DUF441) E3U36_05375 PF05127 Helicase E3U36_05375 PF17176 tRNA-binding domain E3U36_05375 PF13718 GNAT acetyltransferase 2 E3U36_05375 PF08351 Domain of unknown function (DUF1726) E3U36_05385 PF13980 Uncharacterised protein family (UPF0370) E3U36_05390 PF04304 Protein of unknown function (DUF454) E3U36_05395 PF07687 Peptidase dimerisation domain E3U36_05395 PF01546 Peptidase family M20/M25/M40 E3U36_05420 PF13953 PapC C-terminal domain E3U36_05420 PF00577 Outer membrane usher protein E3U36_05420 PF13954 PapC N-terminal domain E3U36_05425 PF13953 PapC C-terminal domain E3U36_05425 PF13954 PapC N-terminal domain E3U36_05425 PF00577 Outer membrane usher protein E3U36_05430 PF13954 PapC N-terminal domain E3U36_05430 PF00577 Outer membrane usher protein E3U36_05430 PF13953 PapC C-terminal domain E3U36_05440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3U36_05440 PF02753 Pili assembly chaperone PapD, C-terminal domain E3U36_05445 PF06039 Malate:quinone oxidoreductase (Mqo) E3U36_05450 PF13737 Transposase DDE domain E3U36_05475 PF06226 Protein of unknown function (DUF1007) E3U36_05485 PF13737 Transposase DDE domain E3U36_05495 PF02313 Fumarate reductase subunit D E3U36_05505 PF13085 2Fe-2S iron-sulfur cluster binding domain E3U36_05505 PF13183 4Fe-4S dicluster domain E3U36_05515 PF13737 Transposase DDE domain E3U36_05520 PF03734 L,D-transpeptidase catalytic domain E3U36_05525 PF13737 Transposase DDE domain E3U36_05560 PF02424 ApbE family E3U36_05565 PF04400 (Na+)-NQR maturation NqrM E3U36_05575 PF13737 Transposase DDE domain E3U36_05580 PF01384 Phosphate transporter family E3U36_05590 PF13737 Transposase DDE domain E3U36_05600 PF01293 Phosphoenolpyruvate carboxykinase E3U36_05605 PF01430 Hsp33 protein E3U36_05610 PF13737 Transposase DDE domain E3U36_05615 PF01053 Cys/Met metabolism PLP-dependent enzyme E3U36_05620 PF03553 Na+/H+ antiporter family E3U36_05625 PF00490 Delta-aminolevulinic acid dehydratase E3U36_05630 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3U36_05640 PF13737 Transposase DDE domain E3U36_05660 PF13737 Transposase DDE domain E3U36_05665 PF00375 Sodium:dicarboxylate symporter family E3U36_05670 PF01116 Fructose-bisphosphate aldolase class-II E3U36_05675 PF00162 Phosphoglycerate kinase E3U36_05680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3U36_05680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3U36_05685 PF00456 Transketolase, thiamine diphosphate binding domain E3U36_05685 PF02780 Transketolase, C-terminal domain E3U36_05685 PF02779 Transketolase, pyrimidine binding domain E3U36_05695 PF00929 Exonuclease E3U36_05700 PF00075 RNase H E3U36_05705 PF08241 Methyltransferase domain E3U36_05710 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3U36_05710 PF00753 Metallo-beta-lactamase superfamily E3U36_05715 PF01476 LysM domain E3U36_05715 PF01464 Transglycosylase SLT domain E3U36_05725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E3U36_05740 PF05552 Conserved TM helix E3U36_05740 PF00924 Mechanosensitive ion channel E3U36_05750 PF13737 Transposase DDE domain E3U36_05770 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3U36_05770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3U36_05775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3U36_05775 PF00364 Biotin-requiring enzyme E3U36_05775 PF02817 e3 binding domain E3U36_05780 PF17831 Pyruvate dehydrogenase E1 component middle domain E3U36_05780 PF00456 Transketolase, thiamine diphosphate binding domain E3U36_05785 PF07729 FCD domain E3U36_05785 PF00392 Bacterial regulatory proteins, gntR family E3U36_05790 PF13737 Transposase DDE domain E3U36_05795 PF13737 Transposase DDE domain E3U36_05800 PF00155 Aminotransferase class I and II E3U36_05805 PF01168 Alanine racemase, N-terminal domain E3U36_05805 PF00842 Alanine racemase, C-terminal domain E3U36_05810 PF03796 DnaB-like helicase C terminal domain E3U36_05810 PF00772 DnaB-like helicase N terminal domain E3U36_05820 PF01207 Dihydrouridine synthase (Dus) E3U36_05825 PF13737 Transposase DDE domain E3U36_05865 PF13737 Transposase DDE domain E3U36_05870 PF06445 GyrI-like small molecule binding domain E3U36_05870 PF12833 Helix-turn-helix domain E3U36_05875 PF13737 Transposase DDE domain E3U36_05885 PF00324 Amino acid permease E3U36_05895 PF13737 Transposase DDE domain E3U36_05915 PF02447 GntP family permease E3U36_05925 PF01475 Ferric uptake regulator family E3U36_05930 PF01726 LexA DNA binding domain E3U36_05930 PF00717 Peptidase S24-like E3U36_05940 PF01553 Acyltransferase E3U36_05945 PF01040 UbiA prenyltransferase family E3U36_05950 PF04345 Chorismate lyase E3U36_05955 PF00342 Phosphoglucose isomerase E3U36_05960 PF01842 ACT domain E3U36_05960 PF00696 Amino acid kinase family E3U36_05975 PF13737 Transposase DDE domain E3U36_05980 PF01274 Malate synthase E3U36_06010 PF13737 Transposase DDE domain E3U36_06015 PF01571 Aminomethyltransferase folate-binding domain E3U36_06045 PF13737 Transposase DDE domain E3U36_06050 PF00589 Phage integrase family E3U36_06050 PF02899 Phage integrase, N-terminal SAM-like domain E3U36_06055 PF13098 Thioredoxin-like domain E3U36_06055 PF10411 Disulfide bond isomerase protein N-terminus E3U36_06060 PF02272 DHHA1 domain E3U36_06060 PF01368 DHH family E3U36_06060 PF17768 RecJ OB domain E3U36_06070 PF00152 tRNA synthetases class II (D, K and N) E3U36_06070 PF01336 OB-fold nucleic acid binding domain E3U36_06075 PF02677 Epoxyqueuosine reductase QueH E3U36_06105 PF10531 SLBB domain E3U36_06105 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E3U36_06105 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3U36_06110 PF00384 Molybdopterin oxidoreductase E3U36_06110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3U36_06110 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E3U36_06110 PF01568 Molydopterin dinucleotide binding domain E3U36_06120 PF12838 4Fe-4S dicluster domain E3U36_06135 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E3U36_06145 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E3U36_06145 PF00361 Proton-conducting membrane transporter E3U36_06155 PF00361 Proton-conducting membrane transporter E3U36_06180 PF13378 Enolase C-terminal domain-like E3U36_06200 PF03222 Tryptophan/tyrosine permease family E3U36_06210 PF00111 2Fe-2S iron-sulfur cluster binding domain E3U36_06215 PF00268 Ribonucleotide reductase, small chain E3U36_06220 PF00317 Ribonucleotide reductase, all-alpha domain E3U36_06220 PF03477 ATP cone domain E3U36_06220 PF02867 Ribonucleotide reductase, barrel domain E3U36_06230 PF03989 DNA gyrase C-terminal domain, beta-propeller E3U36_06230 PF00521 DNA gyrase/topoisomerase IV, subunit A E3U36_06235 PF00512 His Kinase A (phospho-acceptor) domain E3U36_06235 PF00072 Response regulator receiver domain E3U36_06235 PF09456 RcsC Alpha-Beta-Loop (ABL) E3U36_06235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3U36_06245 PF00072 Response regulator receiver domain E3U36_06245 PF00196 Bacterial regulatory proteins, luxR family E3U36_06250 PF16359 RcsD-ABL domain E3U36_06250 PF01627 Hpt domain E3U36_06250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3U36_06265 PF13737 Transposase DDE domain E3U36_06270 PF01386 Ribosomal L25p family E3U36_06275 PF04245 37-kD nucleoid-associated bacterial protein E3U36_06280 PF07208 Protein of unknown function (DUF1414) E3U36_06285 PF00884 Sulfatase E3U36_06285 PF11893 Domain of unknown function (DUF3413) E3U36_06295 PF13737 Transposase DDE domain E3U36_06330 PF13091 PLD-like domain E3U36_06355 PF01177 Asp/Glu/Hydantoin racemase E3U36_06360 PF05958 tRNA (Uracil-5-)-methyltransferase E3U36_06365 PF13737 Transposase DDE domain E3U36_06370 PF03572 Peptidase family S41 E3U36_06370 PF00595 PDZ domain E3U36_06370 PF11818 C-terminal domain of tail specific protease (DUF3340) E3U36_06370 PF17804 Tail specific protease N-terminal domain E3U36_06375 PF04352 ProQ/FINO family E3U36_06375 PF17516 ProQ C-terminal domain E3U36_06380 PF13185 GAF domain E3U36_06385 PF13737 Transposase DDE domain E3U36_06390 PF07351 Protein of unknown function (DUF1480) E3U36_06395 PF13737 Transposase DDE domain E3U36_06410 PF00425 chorismate binding enzyme E3U36_06410 PF04715 Anthranilate synthase component I, N terminal region E3U36_06415 PF03701 Uncharacterised protein family (UPF0181) E3U36_06420 PF13995 YebF-like protein E3U36_06425 PF06440 DNA polymerase III, theta subunit E3U36_06445 PF16658 Class II release factor RF3, C-terminal domain E3U36_06445 PF00009 Elongation factor Tu GTP binding domain E3U36_06445 PF03144 Elongation factor Tu domain 2 E3U36_06455 PF01026 TatD related DNase E3U36_06460 PF01773 Na+ dependent nucleoside transporter N-terminus E3U36_06460 PF07662 Na+ dependent nucleoside transporter C-terminus E3U36_06460 PF07670 Nucleoside recognition E3U36_06465 PF01791 DeoC/LacD family aldolase E3U36_06470 PF01676 Metalloenzyme superfamily E3U36_06475 PF01048 Phosphorylase superfamily E3U36_06490 PF13737 Transposase DDE domain E3U36_06495 PF18429 Domain of unknown function (DUF5609) E3U36_06500 PF18073 Rubredoxin metal binding domain E3U36_06505 PF01381 Helix-turn-helix E3U36_06505 PF13521 AAA domain E3U36_06510 PF12848 ABC transporter E3U36_06510 PF00005 ABC transporter E3U36_06515 PF13737 Transposase DDE domain E3U36_06550 PF13533 Biotin-lipoyl like E3U36_06555 PF13737 Transposase DDE domain E3U36_06560 PF13332 Hemagglutinin repeat E3U36_06560 PF05594 Haemagluttinin repeat E3U36_06560 PF04829 Pre-toxin domain with VENN motif E3U36_06560 PF15526 Novel toxin 21 E3U36_06560 PF05860 haemagglutination activity domain E3U36_06565 PF13332 Hemagglutinin repeat E3U36_06565 PF14436 Bacterial EndoU nuclease E3U36_06565 PF05860 haemagglutination activity domain E3U36_06565 PF04829 Pre-toxin domain with VENN motif E3U36_06565 PF05594 Haemagluttinin repeat E3U36_06590 PF05870 Phenolic acid decarboxylase (PAD) E3U36_06595 PF00005 ABC transporter E3U36_06595 PF17755 UvrA DNA-binding domain E3U36_06595 PF17760 UvrA interaction domain E3U36_06600 PF00436 Single-strand binding protein family E3U36_06615 PF00440 Bacterial regulatory proteins, tetR family E3U36_06620 PF04371 Porphyromonas-type peptidyl-arginine deiminase E3U36_06655 PF00892 EamA-like transporter family E3U36_06660 PF13737 Transposase DDE domain E3U36_06675 PF13737 Transposase DDE domain E3U36_06680 PF07095 Intracellular growth attenuator protein IgaA E3U36_06685 PF01479 S4 domain E3U36_06695 PF13737 Transposase DDE domain E3U36_06705 PF13737 Transposase DDE domain E3U36_06710 PF03846 Cell division inhibitor SulA E3U36_06715 PF01389 OmpA-like transmembrane domain E3U36_06715 PF00691 OmpA family E3U36_06720 PF06303 MatP N-terminal domain E3U36_06720 PF17414 MatP C-terminal ribbon-helix-helix domain E3U36_06725 PF13654 AAA domain E3U36_06725 PF05362 Lon protease (S16) C-terminal proteolytic domain E3U36_06730 PF07977 FabA-like domain E3U36_06735 PF03886 ABC-type transport auxiliary lipoprotein component E3U36_06750 PF12848 ABC transporter E3U36_06750 PF16326 ABC transporter C-terminal domain E3U36_06750 PF00005 ABC transporter E3U36_06755 PF10672 S-adenosylmethionine-dependent methyltransferase E3U36_06755 PF02926 THUMP domain E3U36_06755 PF01170 Putative RNA methylase family UPF0020 E3U36_06765 PF07126 Cell-division protein ZapC E3U36_06770 PF13737 Transposase DDE domain E3U36_06775 PF02634 FdhD/NarQ family E3U36_06780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3U36_06780 PF00384 Molybdopterin oxidoreductase E3U36_06780 PF01568 Molydopterin dinucleotide binding domain E3U36_06785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3U36_06785 PF00384 Molybdopterin oxidoreductase E3U36_06785 PF01568 Molydopterin dinucleotide binding domain E3U36_06795 PF09163 Formate dehydrogenase N, transmembrane E3U36_06795 PF13247 4Fe-4S dicluster domain E3U36_06800 PF01292 Prokaryotic cytochrome b561 E3U36_06820 PF00107 Zinc-binding dehydrogenase E3U36_06820 PF08240 Alcohol dehydrogenase GroES-like domain E3U36_06825 PF01370 NAD dependent epimerase/dehydratase family E3U36_06830 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3U36_06830 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3U36_06830 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3U36_06865 PF13737 Transposase DDE domain E3U36_06875 PF13953 PapC C-terminal domain E3U36_06875 PF00577 Outer membrane usher protein E3U36_06875 PF13954 PapC N-terminal domain E3U36_06880 PF13737 Transposase DDE domain E3U36_06890 PF02666 Phosphatidylserine decarboxylase E3U36_06895 PF03193 RsgA GTPase E3U36_06900 PF00929 Exonuclease E3U36_06915 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E3U36_06920 PF01520 N-acetylmuramoyl-L-alanine amidase E3U36_06925 PF08676 MutL C terminal dimerisation domain E3U36_06925 PF01119 DNA mismatch repair protein, C-terminal domain E3U36_06935 PF17209 Hfq protein E3U36_06940 PF16360 GTP-binding GTPase Middle Region E3U36_06940 PF13167 GTP-binding GTPase N-terminal E3U36_06940 PF01926 50S ribosome-binding GTPase E3U36_06945 PF01145 SPFH domain / Band 7 family E3U36_06945 PF12221 Bacterial membrane protein N terminal E3U36_06950 PF01145 SPFH domain / Band 7 family E3U36_06955 PF00709 Adenylosuccinate synthetase E3U36_06960 PF02082 Transcriptional regulator E3U36_06965 PF17876 Cold shock domain E3U36_06965 PF08461 Ribonuclease R winged-helix domain E3U36_06965 PF00575 S1 RNA binding domain E3U36_06965 PF08206 Ribonuclease B OB domain E3U36_06965 PF00773 RNB domain E3U36_06970 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3U36_06970 PF00588 SpoU rRNA Methylase family E3U36_06975 PF01250 Ribosomal protein S6 E3U36_06980 PF00436 Single-strand binding protein family E3U36_06985 PF01084 Ribosomal protein S18 E3U36_06990 PF01281 Ribosomal protein L9, N-terminal domain E3U36_06990 PF03948 Ribosomal protein L9, C-terminal domain E3U36_06995 PF00459 Inositol monophosphatase family E3U36_07005 PF06526 Protein of unknown function (DUF1107) E3U36_07010 PF01431 Peptidase family M13 E3U36_07010 PF05649 Peptidase family M13 E3U36_07035 PF00719 Inorganic pyrophosphatase E3U36_07045 PF13737 Transposase DDE domain E3U36_07050 PF13419 Haloacid dehalogenase-like hydrolase E3U36_07085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3U36_07115 PF01032 FecCD transport family E3U36_07125 PF00005 ABC transporter E3U36_07130 PF13737 Transposase DDE domain E3U36_07150 PF00132 Bacterial transferase hexapeptide (six repeats) E3U36_07155 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3U36_07165 PF13737 Transposase DDE domain E3U36_07190 PF02254 TrkA-N domain E3U36_07190 PF00999 Sodium/hydrogen exchanger family E3U36_07205 PF13737 Transposase DDE domain E3U36_07210 PF02706 Chain length determinant protein E3U36_07215 PF13737 Transposase DDE domain E3U36_07220 PF01569 PAP2 superfamily E3U36_07230 PF00462 Glutaredoxin E3U36_07235 PF07214 Protein of unknown function (DUF1418) E3U36_07240 PF10722 Putative bacterial sensory transduction regulator E3U36_07250 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_07255 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_07260 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3U36_07265 PF00005 ABC transporter E3U36_07295 PF00313 'Cold-shock' DNA-binding domain E3U36_07300 PF02617 ATP-dependent Clp protease adaptor protein ClpS E3U36_07305 PF07724 AAA domain (Cdc48 subfamily) E3U36_07305 PF00004 ATPase family associated with various cellular activities (AAA) E3U36_07305 PF02861 Clp amino terminal domain, pathogenicity island component E3U36_07305 PF10431 C-terminal, D2-small domain, of ClpB protein E3U36_07305 PF17871 AAA lid domain E3U36_07310 PF01176 Translation initiation factor 1A / IF-1 E3U36_07315 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E3U36_07320 PF00664 ABC transporter transmembrane region E3U36_07320 PF00005 ABC transporter E3U36_07325 PF00005 ABC transporter E3U36_07325 PF00664 ABC transporter transmembrane region E3U36_07330 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3U36_07335 PF01037 Lrp/AsnC ligand binding domain E3U36_07340 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E3U36_07340 PF17854 FtsK alpha domain E3U36_07340 PF09397 Ftsk gamma domain E3U36_07340 PF01580 FtsK/SpoIIIE family E3U36_07345 PF03548 Outer membrane lipoprotein carrier protein LolA E3U36_07350 PF12002 MgsA AAA+ ATPase C terminal E3U36_07350 PF16193 AAA C-terminal domain E3U36_07350 PF00004 ATPase family associated with various cellular activities (AAA) E3U36_07355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3U36_07355 PF02403 Seryl-tRNA synthetase N-terminal domain E3U36_07370 PF00710 Asparaginase, N-terminal E3U36_07370 PF17763 Glutaminase/Asparaginase C-terminal domain E3U36_07375 PF00266 Aminotransferase class-V E3U36_07380 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3U36_07385 PF02224 Cytidylate kinase E3U36_07390 PF00575 S1 RNA binding domain E3U36_07395 PF00216 Bacterial DNA-binding protein E3U36_07400 PF13737 Transposase DDE domain E3U36_07405 PF01061 ABC-2 type transporter E3U36_07410 PF00005 ABC transporter E3U36_07420 PF00156 Phosphoribosyl transferase domain E3U36_07430 PF13737 Transposase DDE domain E3U36_07435 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) E3U36_07440 PF17284 Spermidine synthase tetramerisation domain E3U36_07445 PF02675 S-adenosylmethionine decarboxylase E3U36_07465 PF01554 MatE E3U36_07470 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3U36_07470 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3U36_07475 PF04328 Selenoprotein, putative E3U36_07495 PF00583 Acetyltransferase (GNAT) family E3U36_07500 PF05190 MutS family domain IV E3U36_07500 PF05192 MutS domain III E3U36_07500 PF05188 MutS domain II E3U36_07500 PF01624 MutS domain I E3U36_07500 PF00488 MutS domain V E3U36_07515 PF01551 Peptidase family M23 E3U36_07515 PF01476 LysM domain E3U36_07525 PF01975 Survival protein SurE E3U36_07530 PF13737 Transposase DDE domain E3U36_07540 PF02542 YgbB family E3U36_07545 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E3U36_07550 PF04977 Septum formation initiator E3U36_07555 PF13737 Transposase DDE domain E3U36_07570 PF00324 Amino acid permease E3U36_07575 PF03372 Endonuclease/Exonuclease/phosphatase family E3U36_07610 PF13737 Transposase DDE domain E3U36_07615 PF01808 AICARFT/IMPCHase bienzyme E3U36_07615 PF02142 MGS-like domain E3U36_07625 PF07356 Protein of unknown function (DUF1481) E3U36_07630 PF00216 Bacterial DNA-binding protein E3U36_07635 PF04222 Protein of unknown function (DUF416) E3U36_07640 PF04493 Endonuclease V E3U36_07650 PF13737 Transposase DDE domain E3U36_07660 PF13737 Transposase DDE domain E3U36_07665 PF05472 DNA replication terminus site-binding protein (Ter protein) E3U36_07670 PF05472 DNA replication terminus site-binding protein (Ter protein) E3U36_07675 PF10415 Fumarase C C-terminus E3U36_07675 PF00206 Lyase E3U36_07680 PF01238 Phosphomannose isomerase type I E3U36_07685 PF06097 Bacterial protein of unknown function (DUF945) E3U36_07690 PF13737 Transposase DDE domain E3U36_07705 PF02508 Rnf-Nqr subunit, membrane protein E3U36_07710 PF04060 Putative Fe-S cluster E3U36_07715 PF13375 RnfC Barrel sandwich hybrid domain E3U36_07715 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3U36_07715 PF13237 4Fe-4S dicluster domain E3U36_07715 PF10531 SLBB domain E3U36_07720 PF03116 NQR2, RnfD, RnfE family E3U36_07725 PF04205 FMN-binding domain E3U36_07730 PF02508 Rnf-Nqr subunit, membrane protein E3U36_07735 PF10576 Iron-sulfur binding domain of endonuclease III E3U36_07735 PF00633 Helix-hairpin-helix motif E3U36_07735 PF00730 HhH-GPD superfamily base excision DNA repair protein E3U36_07740 PF17876 Cold shock domain E3U36_07740 PF00575 S1 RNA binding domain E3U36_07740 PF00773 RNB domain E3U36_07740 PF08206 Ribonuclease B OB domain E3U36_07765 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3U36_07770 PF18073 Rubredoxin metal binding domain E3U36_07775 PF06305 Lipopolysaccharide assembly protein A domain E3U36_07780 PF00925 GTP cyclohydrolase II E3U36_07790 PF13737 Transposase DDE domain E3U36_07795 PF00005 ABC transporter E3U36_07800 PF01032 FecCD transport family E3U36_07815 PF13737 Transposase DDE domain E3U36_07820 PF13737 Transposase DDE domain E3U36_07830 PF00970 Oxidoreductase FAD-binding domain E3U36_07830 PF00175 Oxidoreductase NAD-binding domain E3U36_07835 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase E3U36_07840 PF03575 Peptidase family S51 E3U36_07845 PF02357 Transcription termination factor nusG E3U36_07850 PF00902 Sec-independent protein translocase protein (TatC) E3U36_07860 PF02416 mttA/Hcf106 family E3U36_07865 PF03109 ABC1 family E3U36_07875 PF01209 ubiE/COQ5 methyltransferase family E3U36_07880 PF02646 RmuC family E3U36_07885 PF09335 SNARE associated Golgi protein E3U36_07895 PF13737 Transposase DDE domain E3U36_07920 PF08659 KR domain E3U36_07920 PF02801 Beta-ketoacyl synthase, C-terminal domain E3U36_07920 PF16197 Ketoacyl-synthetase C-terminal extension E3U36_07920 PF08242 Methyltransferase domain E3U36_07920 PF00109 Beta-ketoacyl synthase, N-terminal domain E3U36_07920 PF14765 Polyketide synthase dehydratase E3U36_07920 PF00550 Phosphopantetheine attachment site E3U36_07930 PF00668 Condensation domain E3U36_07930 PF00550 Phosphopantetheine attachment site E3U36_07930 PF00501 AMP-binding enzyme E3U36_07930 PF13193 AMP-binding enzyme C-terminal domain E3U36_07935 PF00501 AMP-binding enzyme E3U36_07935 PF00668 Condensation domain E3U36_07935 PF00550 Phosphopantetheine attachment site E3U36_07935 PF08242 Methyltransferase domain E3U36_07945 PF00975 Thioesterase domain E3U36_07945 PF00550 Phosphopantetheine attachment site E3U36_07945 PF00668 Condensation domain E3U36_07945 PF00501 AMP-binding enzyme E3U36_07945 PF13193 AMP-binding enzyme C-terminal domain E3U36_07950 PF00501 AMP-binding enzyme E3U36_07950 PF13193 AMP-binding enzyme C-terminal domain E3U36_07950 PF00668 Condensation domain E3U36_07950 PF07993 Male sterility protein E3U36_07950 PF00550 Phosphopantetheine attachment site E3U36_07960 PF13737 Transposase DDE domain E3U36_07965 PF01432 Peptidase family M3 E3U36_07970 PF04445 Putative SAM-dependent methyltransferase E3U36_07990 PF13737 Transposase DDE domain E3U36_08010 PF02254 TrkA-N domain E3U36_08010 PF00999 Sodium/hydrogen exchanger family E3U36_08020 PF00440 Bacterial regulatory proteins, tetR family E3U36_08025 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3U36_08025 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3U36_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3U36_08030 PF03466 LysR substrate binding domain E3U36_08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3U36_08040 PF03466 LysR substrate binding domain E3U36_08070 PF04217 Protein of unknown function, DUF412 E3U36_08075 PF00871 Acetokinase family E3U36_08080 PF01515 Phosphate acetyl/butaryl transferase E3U36_08080 PF07085 DRTGG domain E3U36_08090 PF18807 Tripartite Tc toxins repeat E3U36_08090 PF05785 Rho-activating domain of cytotoxic necrotizing factor E3U36_08110 PF13737 Transposase DDE domain E3U36_08125 PF04333 MlaA lipoprotein E3U36_08135 PF04175 Protein of unknown function (DUF406) E3U36_08140 PF00108 Thiolase, N-terminal domain E3U36_08140 PF02803 Thiolase, C-terminal domain E3U36_08145 PF00378 Enoyl-CoA hydratase/isomerase E3U36_08145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3U36_08145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3U36_08155 PF01713 Smr domain E3U36_08160 PF05175 Methyltransferase small domain E3U36_08165 PF01264 Chorismate synthase E3U36_08170 PF04315 Elongation factor P hydroxylase E3U36_08175 PF08891 YfcL protein E3U36_08190 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E3U36_08190 PF01266 FAD dependent oxidoreductase E3U36_08195 PF13737 Transposase DDE domain E3U36_08200 PF01266 FAD dependent oxidoreductase E3U36_08200 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E3U36_08205 PF00109 Beta-ketoacyl synthase, N-terminal domain E3U36_08205 PF02801 Beta-ketoacyl synthase, C-terminal domain E3U36_08215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3U36_08215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3U36_08215 PF11890 Domain of unknown function (DUF3410) E3U36_08225 PF01416 tRNA pseudouridine synthase E3U36_08230 PF09335 SNARE associated Golgi protein E3U36_08235 PF17848 Acetyl-coA carboxylase zinc finger domain E3U36_08235 PF01039 Carboxyl transferase domain E3U36_08240 PF02875 Mur ligase family, glutamate ligase domain E3U36_08240 PF08245 Mur ligase middle domain E3U36_08245 PF05036 Sporulation related domain E3U36_08250 PF02674 Colicin V production protein E3U36_08260 PF02441 Flavoprotein E3U36_08270 PF13737 Transposase DDE domain E3U36_08275 PF13538 UvrD-like helicase C-terminal domain E3U36_08280 PF12705 PD-(D/E)XK nuclease superfamily E3U36_08280 PF00580 UvrD/REP helicase N-terminal domain E3U36_08280 PF13361 UvrD-like helicase C-terminal domain E3U36_08290 PF17946 RecC C-terminal domain E3U36_08325 PF00303 Thymidylate synthase E3U36_08330 PF01790 Prolipoprotein diacylglyceryl transferase E3U36_08335 PF00293 NUDIX domain E3U36_08345 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_08350 PF00005 ABC transporter E3U36_08355 PF13737 Transposase DDE domain E3U36_08365 PF00849 RNA pseudouridylate synthase E3U36_08370 PF00226 DnaJ domain E3U36_08370 PF05099 Tellurite resistance protein TerB E3U36_08375 PF04453 LPS transport system D E3U36_08375 PF03968 OstA-like protein E3U36_08380 PF09312 SurA N-terminal domain E3U36_08385 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3U36_08390 PF00398 Ribosomal RNA adenine dimethylase E3U36_08395 PF04379 ApaG domain E3U36_08400 PF00149 Calcineurin-like phosphoesterase E3U36_08405 PF00186 Dihydrofolate reductase E3U36_08415 PF01553 Acyltransferase E3U36_08420 PF03989 DNA gyrase C-terminal domain, beta-propeller E3U36_08420 PF00521 DNA gyrase/topoisomerase IV, subunit A E3U36_08425 PF00204 DNA gyrase B E3U36_08425 PF01751 Toprim domain E3U36_08425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3U36_08425 PF00986 DNA gyrase B subunit, carboxyl terminus E3U36_08435 PF00149 Calcineurin-like phosphoesterase E3U36_08445 PF02321 Outer membrane efflux protein E3U36_08450 PF06693 Protein of unknown function (DUF1190) E3U36_08455 PF03738 Glutathionylspermidine synthase preATP-grasp E3U36_08465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3U36_08480 PF13737 Transposase DDE domain E3U36_08485 PF00471 Ribosomal protein L33 E3U36_08490 PF00830 Ribosomal L28 family E3U36_08500 PF04002 RadC-like JAB domain E3U36_08505 PF02441 Flavoprotein E3U36_08505 PF04127 DNA / pantothenate metabolism flavoprotein E3U36_08510 PF00692 dUTPase E3U36_08515 PF00440 Bacterial regulatory proteins, tetR family E3U36_08520 PF00156 Phosphoribosyl transferase domain E3U36_08525 PF03725 3' exoribonuclease family, domain 2 E3U36_08525 PF01138 3' exoribonuclease family, domain 1 E3U36_08530 PF03755 YicC-like family, N-terminal region E3U36_08530 PF08340 Domain of unknown function (DUF1732) E3U36_08545 PF13737 Transposase DDE domain E3U36_08560 PF13737 Transposase DDE domain E3U36_08565 PF00365 Phosphofructokinase E3U36_08570 PF01266 FAD dependent oxidoreductase E3U36_08570 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E3U36_08575 PF08220 DeoR-like helix-turn-helix domain E3U36_08575 PF00455 DeoR C terminal sensor domain E3U36_08580 PF01694 Rhomboid family E3U36_08580 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease E3U36_08585 PF00581 Rhodanese-like domain E3U36_08595 PF01521 Iron-sulphur cluster biosynthesis E3U36_08595 PF01106 NifU-like domain E3U36_08600 PF00156 Phosphoribosyl transferase domain E3U36_08605 PF00561 alpha/beta hydrolase fold E3U36_08610 PF09012 FeoC like transcriptional regulator E3U36_08615 PF07664 Ferrous iron transport protein B C terminus E3U36_08615 PF07670 Nucleoside recognition E3U36_08615 PF17910 FeoB cytosolic helical domain E3U36_08615 PF02421 Ferrous iron transport protein B E3U36_08620 PF04023 FeoA domain E3U36_08635 PF00575 S1 RNA binding domain E3U36_08635 PF16921 Tex protein YqgF-like domain E3U36_08635 PF09371 Tex-like protein N-terminal domain E3U36_08635 PF17674 HHH domain E3U36_08640 PF03449 Transcription elongation factor, N-terminal E3U36_08640 PF01272 Transcription elongation factor, GreA/GreB, C-term E3U36_08645 PF00486 Transcriptional regulatory protein, C terminal E3U36_08645 PF00072 Response regulator receiver domain E3U36_08650 PF00672 HAMP domain E3U36_08650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3U36_08650 PF00512 His Kinase A (phospho-acceptor) domain E3U36_08660 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_08670 PF13737 Transposase DDE domain E3U36_08680 PF00005 ABC transporter E3U36_08685 PF01895 PhoU domain E3U36_08705 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_08710 PF00860 Permease family E3U36_08715 PF04220 Der GTPase activator (YihI) E3U36_08720 PF13737 Transposase DDE domain E3U36_08725 PF04220 Der GTPase activator (YihI) E3U36_08730 PF04055 Radical SAM superfamily E3U36_08730 PF06969 HemN C-terminal domain E3U36_08745 PF03951 Glutamine synthetase, beta-Grasp domain E3U36_08745 PF00120 Glutamine synthetase, catalytic domain E3U36_08760 PF03458 UPF0126 domain E3U36_08765 PF03120 NAD-dependent DNA ligase OB-fold domain E3U36_08765 PF01653 NAD-dependent DNA ligase adenylation domain E3U36_08770 PF03120 NAD-dependent DNA ligase OB-fold domain E3U36_08770 PF01653 NAD-dependent DNA ligase adenylation domain E3U36_08775 PF01653 NAD-dependent DNA ligase adenylation domain E3U36_08775 PF03120 NAD-dependent DNA ligase OB-fold domain E3U36_08780 PF13737 Transposase DDE domain E3U36_08785 PF00625 Guanylate kinase E3U36_08790 PF01192 RNA polymerase Rpb6 E3U36_08795 PF04607 Region found in RelA / SpoT proteins E3U36_08795 PF13291 ACT domain E3U36_08795 PF02824 TGS domain E3U36_08800 PF00588 SpoU rRNA Methylase family E3U36_08800 PF12105 SpoU, rRNA methylase, C-terminal E3U36_08805 PF17191 RecG wedge domain E3U36_08805 PF00271 Helicase conserved C-terminal domain E3U36_08805 PF00270 DEAD/DEAH box helicase E3U36_08810 PF03616 Sodium/glutamate symporter E3U36_08815 PF13737 Transposase DDE domain E3U36_08820 PF13737 Transposase DDE domain E3U36_08830 PF13737 Transposase DDE domain E3U36_08835 PF13737 Transposase DDE domain E3U36_08840 PF08468 Methyltransferase small domain N-terminal E3U36_08840 PF05175 Methyltransferase small domain E3U36_08850 PF12724 Flavodoxin domain E3U36_08855 PF02386 Cation transport protein E3U36_08875 PF13737 Transposase DDE domain E3U36_08890 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E3U36_08890 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E3U36_08895 PF02622 Uncharacterized ACR, COG1678 E3U36_08900 PF03652 Holliday junction resolvase E3U36_08910 PF14748 Pyrroline-5-carboxylate reductase dimerisation E3U36_08910 PF03807 NADP oxidoreductase coenzyme F420-dependent E3U36_08915 PF02325 YGGT family E3U36_08920 PF01725 Ham1 family E3U36_08925 PF06969 HemN C-terminal domain E3U36_08925 PF04055 Radical SAM superfamily E3U36_08950 PF02525 Flavodoxin-like fold E3U36_08955 PF12848 ABC transporter E3U36_08955 PF00005 ABC transporter E3U36_08960 PF01380 SIS domain E3U36_08960 PF01418 Helix-turn-helix domain, rpiR family E3U36_08975 PF01810 LysE type translocator E3U36_08980 PF00561 alpha/beta hydrolase fold E3U36_08985 PF06794 Uncharacterised protein family (UPF0270) E3U36_08990 PF00485 Phosphoribulokinase / Uridine kinase family E3U36_08995 PF13737 Transposase DDE domain E3U36_09005 PF00027 Cyclic nucleotide-binding domain E3U36_09005 PF13545 Crp-like helix-turn-helix domain E3U36_09020 PF00117 Glutamine amidotransferase class-I E3U36_09025 PF13737 Transposase DDE domain E3U36_09030 PF08548 Peptidase M10 serralysin C terminal E3U36_09030 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) E3U36_09035 PF00180 Isocitrate/isopropylmalate dehydrogenase E3U36_09040 PF00849 RNA pseudouridylate synthase E3U36_09055 PF04356 Protein of unknown function (DUF489) E3U36_09060 PF08328 Adenylosuccinate lyase C-terminal E3U36_09060 PF00206 Lyase E3U36_09070 PF00486 Transcriptional regulatory protein, C terminal E3U36_09070 PF00072 Response regulator receiver domain E3U36_09095 PF02687 FtsX-like permease family E3U36_09095 PF12704 MacB-like periplasmic core domain E3U36_09100 PF00005 ABC transporter E3U36_09105 PF02687 FtsX-like permease family E3U36_09105 PF12704 MacB-like periplasmic core domain E3U36_09115 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3U36_09125 PF03466 LysR substrate binding domain E3U36_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3U36_09150 PF00464 Serine hydroxymethyltransferase E3U36_09165 PF02540 NAD synthase E3U36_09165 PF00795 Carbon-nitrogen hydrolase E3U36_09170 PF00158 Sigma-54 interaction domain E3U36_09170 PF00072 Response regulator receiver domain E3U36_09175 PF13942 YfhG lipoprotein E3U36_09180 PF00512 His Kinase A (phospho-acceptor) domain E3U36_09180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3U36_09190 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3U36_09190 PF01464 Transglycosylase SLT domain E3U36_09195 PF14437 MafB19-like deaminase E3U36_09205 PF00884 Sulfatase E3U36_09225 PF04386 Stringent starvation protein B E3U36_09230 PF00043 Glutathione S-transferase, C-terminal domain E3U36_09230 PF02798 Glutathione S-transferase, N-terminal domain E3U36_09235 PF00380 Ribosomal protein S9/S16 E3U36_09240 PF00572 Ribosomal protein L13 E3U36_09250 PF06295 Protein of unknown function (DUF1043) E3U36_09255 PF13180 PDZ domain E3U36_09255 PF00595 PDZ domain E3U36_09260 PF13180 PDZ domain E3U36_09265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3U36_09270 PF01722 BolA-like protein E3U36_09280 PF05494 MlaC protein E3U36_09285 PF02470 MlaD protein E3U36_09290 PF02405 Permease MlaE E3U36_09295 PF00005 ABC transporter E3U36_09300 PF01380 SIS domain E3U36_09300 PF00571 CBS domain E3U36_09310 PF06835 Lipopolysaccharide-assembly, LptC-related E3U36_09315 PF03968 OstA-like protein E3U36_09320 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3U36_09320 PF00005 ABC transporter E3U36_09325 PF00309 Sigma-54 factor, Activator interacting domain (AID) E3U36_09325 PF04963 Sigma-54 factor, core binding domain E3U36_09325 PF04552 Sigma-54, DNA binding domain E3U36_09330 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3U36_09335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3U36_09340 PF03668 P-loop ATPase protein family E3U36_09345 PF00381 PTS HPr component phosphorylation site E3U36_09355 PF04751 Protein of unknown function (DUF615) E3U36_09375 PF00795 Carbon-nitrogen hydrolase E3U36_09380 PF13116 Protein of unknown function E3U36_09380 PF13502 AsmA-like C-terminal region E3U36_09385 PF10150 Ribonuclease E/G family E3U36_09385 PF00575 S1 RNA binding domain E3U36_09390 PF02545 Maf-like protein E3U36_09395 PF04093 rod shape-determining protein MreD E3U36_09400 PF04085 rod shape-determining protein MreC E3U36_09410 PF13737 Transposase DDE domain E3U36_09420 PF01220 Dehydroquinase class II E3U36_09425 PF00364 Biotin-requiring enzyme E3U36_09430 PF02785 Biotin carboxylase C-terminal domain E3U36_09430 PF00289 Biotin carboxylase, N-terminal domain E3U36_09430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3U36_09435 PF06196 Protein of unknown function (DUF997) E3U36_09440 PF00474 Sodium:solute symporter family E3U36_09450 PF01207 Dihydrouridine synthase (Dus) E3U36_09455 PF01207 Dihydrouridine synthase (Dus) E3U36_09465 PF04542 Sigma-70 region 2 E3U36_09465 PF00140 Sigma-70 factor, region 1.2 E3U36_09465 PF04545 Sigma-70, region 4 E3U36_09470 PF02687 FtsX-like permease family E3U36_09470 PF18075 FtsX extracellular domain E3U36_09475 PF00005 ABC transporter E3U36_09480 PF02881 SRP54-type protein, helical bundle domain E3U36_09480 PF00448 SRP54-type protein, GTPase domain E3U36_09490 PF06611 Protein of unknown function (DUF1145) E3U36_09500 PF07947 YhhN family E3U36_09510 PF01206 Sulfurtransferase TusA E3U36_09515 PF02592 Putative vitamin uptake transporter E3U36_09545 PF00152 tRNA synthetases class II (D, K and N) E3U36_09550 PF13737 Transposase DDE domain E3U36_09555 PF13737 Transposase DDE domain E3U36_09565 PF13580 SIS domain E3U36_09580 PF03466 LysR substrate binding domain E3U36_09580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3U36_09585 PF13737 Transposase DDE domain E3U36_09595 PF01594 AI-2E family transporter E3U36_09605 PF03061 Thioesterase superfamily E3U36_09610 PF01521 Iron-sulphur cluster biosynthesis E3U36_09615 PF01458 Uncharacterized protein family (UPF0051) E3U36_09620 PF00005 ABC transporter E3U36_09625 PF01458 Uncharacterized protein family (UPF0051) E3U36_09630 PF00266 Aminotransferase class-V E3U36_09635 PF02657 Fe-S metabolism associated domain E3U36_09640 PF03734 L,D-transpeptidase catalytic domain E3U36_09640 PF17969 L,D-transpeptidase C-terminal domain E3U36_09640 PF01476 LysM domain E3U36_09645 PF04728 Lipoprotein leucine-zipper E3U36_09650 PF00224 Pyruvate kinase, barrel domain E3U36_09650 PF02887 Pyruvate kinase, alpha/beta domain E3U36_09665 PF13737 Transposase DDE domain E3U36_09670 PF03279 Bacterial lipid A biosynthesis acyltransferase E3U36_09675 PF13737 Transposase DDE domain E3U36_09680 PF08525 Opacity-associated protein A N-terminal motif E3U36_09680 PF01476 LysM domain E3U36_09680 PF01551 Peptidase family M23 E3U36_09685 PF01297 Zinc-uptake complex component A periplasmic E3U36_09690 PF00005 ABC transporter E3U36_09695 PF00950 ABC 3 transport family E3U36_09700 PF13505 Outer membrane protein beta-barrel domain E3U36_09705 PF13737 Transposase DDE domain E3U36_09710 PF03776 Septum formation topological specificity factor MinE E3U36_09715 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3U36_09720 PF03775 Septum formation inhibitor MinC, C-terminal domain E3U36_09720 PF05209 Septum formation inhibitor MinC, N-terminal domain E3U36_09725 PF05166 YcgL domain E3U36_09740 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3U36_09745 PF03692 Putative zinc- or iron-chelating domain E3U36_09765 PF11739 Dicarboxylate transport E3U36_09775 PF11739 Dicarboxylate transport E3U36_09785 PF07027 Protein of unknown function (DUF1318) E3U36_09795 PF00419 Fimbrial protein E3U36_09805 PF13953 PapC C-terminal domain E3U36_09805 PF13954 PapC N-terminal domain E3U36_09805 PF00577 Outer membrane usher protein E3U36_09810 PF13953 PapC C-terminal domain E3U36_09810 PF00577 Outer membrane usher protein E3U36_09810 PF13954 PapC N-terminal domain E3U36_09815 PF07338 Protein of unknown function (DUF1471) E3U36_09835 PF00027 Cyclic nucleotide-binding domain E3U36_09835 PF00325 Bacterial regulatory proteins, crp family E3U36_09840 PF13737 Transposase DDE domain E3U36_09855 PF13737 Transposase DDE domain E3U36_09860 PF08240 Alcohol dehydrogenase GroES-like domain E3U36_09860 PF14765 Polyketide synthase dehydratase E3U36_09860 PF00550 Phosphopantetheine attachment site E3U36_09860 PF02801 Beta-ketoacyl synthase, C-terminal domain E3U36_09860 PF00109 Beta-ketoacyl synthase, N-terminal domain E3U36_09860 PF16197 Ketoacyl-synthetase C-terminal extension E3U36_09860 PF00698 Acyl transferase domain E3U36_09860 PF08659 KR domain E3U36_09870 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3U36_09870 PF00578 AhpC/TSA family E3U36_09885 PF13737 Transposase DDE domain E3U36_09895 PF13737 Transposase DDE domain E3U36_09900 PF13737 Transposase DDE domain E3U36_09905 PF03313 Serine dehydratase alpha chain E3U36_09905 PF03315 Serine dehydratase beta chain E3U36_09920 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3U36_09920 PF12795 Mechanosensitive ion channel porin domain E3U36_09920 PF00924 Mechanosensitive ion channel E3U36_09925 PF02635 DsrE/DsrF-like family E3U36_09930 PF00440 Bacterial regulatory proteins, tetR family E3U36_09930 PF08361 MAATS-type transcriptional repressor, C-terminal region E3U36_09935 PF00529 HlyD membrane-fusion protein of T1SS E3U36_09935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3U36_09940 PF00873 AcrB/AcrD/AcrF family E3U36_09950 PF13737 Transposase DDE domain E3U36_09965 PF05321 Haemolysin expression modulating protein E3U36_09975 PF13737 Transposase DDE domain E3U36_09980 PF13145 PPIC-type PPIASE domain E3U36_09990 PF00004 ATPase family associated with various cellular activities (AAA) E3U36_09990 PF05362 Lon protease (S16) C-terminal proteolytic domain E3U36_09990 PF02190 ATP-dependent protease La (LON) substrate-binding domain E3U36_09995 PF07724 AAA domain (Cdc48 subfamily) E3U36_09995 PF06689 ClpX C4-type zinc finger E3U36_09995 PF10431 C-terminal, D2-small domain, of ClpB protein E3U36_10000 PF00574 Clp protease E3U36_10005 PF05697 Bacterial trigger factor protein (TF) E3U36_10005 PF05698 Bacterial trigger factor protein (TF) C-terminus E3U36_10005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3U36_10010 PF01722 BolA-like protein E3U36_10030 PF13737 Transposase DDE domain E3U36_10035 PF00117 Glutamine amidotransferase class-I E3U36_10035 PF02540 NAD synthase E3U36_10035 PF00958 GMP synthase C terminal domain E3U36_10040 PF00571 CBS domain E3U36_10040 PF00478 IMP dehydrogenase / GMP reductase domain E3U36_10060 PF13737 Transposase DDE domain E3U36_10065 PF03949 Malic enzyme, NAD binding domain E3U36_10065 PF00390 Malic enzyme, N-terminal domain E3U36_10065 PF01515 Phosphate acetyl/butaryl transferase E3U36_10070 PF13737 Transposase DDE domain E3U36_10075 PF13737 Transposase DDE domain E3U36_10080 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E3U36_10080 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3U36_10085 PF02378 Phosphotransferase system, EIIC E3U36_10085 PF00367 phosphotransferase system, EIIB E3U36_10085 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3U36_10090 PF13737 Transposase DDE domain E3U36_10095 PF00582 Universal stress protein family E3U36_10100 PF03974 Ecotin E3U36_10125 PF13737 Transposase DDE domain E3U36_10130 PF13673 Acetyltransferase (GNAT) domain E3U36_10140 PF05932 Tir chaperone protein (CesT) family E3U36_10170 PF10781 Dextransucrase DSRB E3U36_10175 PF00313 'Cold-shock' DNA-binding domain E3U36_10195 PF01979 Amidohydrolase family E3U36_10205 PF01501 Glycosyl transferase family 8 E3U36_10205 PF08437 Glycosyl transferase family 8 C-terminal E3U36_10210 PF13737 Transposase DDE domain E3U36_10220 PF00459 Inositol monophosphatase family E3U36_10225 PF00588 SpoU rRNA Methylase family E3U36_10230 PF02082 Transcriptional regulator E3U36_10235 PF00266 Aminotransferase class-V E3U36_10240 PF01592 NifU-like N terminal domain E3U36_10245 PF01521 Iron-sulphur cluster biosynthesis E3U36_10260 PF13737 Transposase DDE domain E3U36_10270 PF00196 Bacterial regulatory proteins, luxR family E3U36_10270 PF03472 Autoinducer binding domain E3U36_10280 PF04754 Putative transposase, YhgA-like E3U36_10285 PF04754 Putative transposase, YhgA-like E3U36_10325 PF00248 Aldo/keto reductase family E3U36_10330 PF00939 Sodium:sulfate symporter transmembrane region E3U36_10340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3U36_10340 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain E3U36_10345 PF03471 Transporter associated domain E3U36_10345 PF00571 CBS domain E3U36_10345 PF03741 Integral membrane protein TerC family E3U36_10350 PF05170 AsmA family E3U36_10355 PF00692 dUTPase E3U36_10365 PF10609 NUBPL iron-transfer P-loop NTPase E3U36_10370 PF01588 Putative tRNA binding domain E3U36_10370 PF09334 tRNA synthetases class I (M) E3U36_10375 PF03788 LrgA family E3U36_10380 PF04172 LrgB-like family E3U36_10385 PF02698 DUF218 domain E3U36_10390 PF04235 Protein of unknown function (DUF418) E3U36_10395 PF04235 Protein of unknown function (DUF418) E3U36_10410 PF01227 GTP cyclohydrolase I E3U36_10420 PF13737 Transposase DDE domain E3U36_10425 PF03454 MoeA C-terminal region (domain IV) E3U36_10425 PF03453 MoeA N-terminal region (domain I and II) E3U36_10425 PF00994 Probable molybdopterin binding domain E3U36_10430 PF00899 ThiF family E3U36_10455 PF00210 Ferritin-like domain E3U36_10460 PF03831 PhnA domain E3U36_10460 PF08274 PhnA Zinc-Ribbon E3U36_10470 PF00581 Rhodanese-like domain E3U36_10475 PF04226 Transglycosylase associated protein E3U36_10490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3U36_10510 PF01027 Inhibitor of apoptosis-promoting Bax1 E3U36_10525 PF01967 MoaC family E3U36_10535 PF01933 Uncharacterised protein family UPF0052 E3U36_10540 PF17757 UvrB interaction domain E3U36_10540 PF00271 Helicase conserved C-terminal domain E3U36_10540 PF02151 UvrB/uvrC motif E3U36_10540 PF04851 Type III restriction enzyme, res subunit E3U36_10540 PF12344 Ultra-violet resistance protein B E3U36_10550 PF08241 Methyltransferase domain E3U36_10565 PF00202 Aminotransferase class-III E3U36_10570 PF10282 Lactonase, 7-bladed beta-propeller E3U36_10580 PF13737 Transposase DDE domain E3U36_10590 PF00854 POT family E3U36_10620 PF00551 Formyl transferase E3U36_10625 PF13302 Acetyltransferase (GNAT) domain E3U36_10630 PF13090 Polyphosphate kinase C-terminal domain 2 E3U36_10630 PF17941 Polyphosphate kinase C-terminal domain 1 E3U36_10630 PF13089 Polyphosphate kinase N-terminal domain E3U36_10630 PF02503 Polyphosphate kinase middle domain E3U36_10635 PF02541 Ppx/GppA phosphatase family E3U36_10640 PF00571 CBS domain E3U36_10640 PF01769 Divalent cation transporter E3U36_10640 PF03448 MgtE intracellular N domain E3U36_10645 PF13737 Transposase DDE domain E3U36_10655 PF00290 Tryptophan synthase alpha chain E3U36_10660 PF04972 BON domain E3U36_10665 PF13737 Transposase DDE domain E3U36_10675 PF04279 Intracellular septation protein A E3U36_10680 PF03061 Thioesterase superfamily E3U36_10685 PF03544 Gram-negative bacterial TonB protein C-terminal E3U36_10695 PF13737 Transposase DDE domain E3U36_10700 PF13091 PLD-like domain E3U36_10700 PF13396 Phospholipase_D-nuclease N-terminal E3U36_10710 PF01914 MarC family integral membrane protein E3U36_10725 PF13737 Transposase DDE domain E3U36_10730 PF13737 Transposase DDE domain E3U36_10735 PF00072 Response regulator receiver domain E3U36_10740 PF00483 Nucleotidyl transferase E3U36_10745 PF13737 Transposase DDE domain E3U36_10750 PF13737 Transposase DDE domain E3U36_10755 PF00816 H-NS histone family E3U36_10765 PF13737 Transposase DDE domain E3U36_10770 PF00265 Thymidine kinase E3U36_10785 PF01842 ACT domain E3U36_10785 PF00551 Formyl transferase E3U36_10800 PF13737 Transposase DDE domain E3U36_10805 PF03372 Endonuclease/Exonuclease/phosphatase family E3U36_10810 PF01131 DNA topoisomerase E3U36_10810 PF01751 Toprim domain E3U36_10820 PF00881 Nitroreductase family E3U36_10825 PF01343 Peptidase family S49 E3U36_10835 PF07023 Protein of unknown function (DUF1315) E3U36_10840 PF01641 SelR domain E3U36_10845 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3U36_10845 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3U36_10855 PF00392 Bacterial regulatory proteins, gntR family E3U36_10855 PF07840 FadR C-terminal domain E3U36_10865 PF02600 Disulfide bond formation protein DsbB E3U36_10870 PF13737 Transposase DDE domain E3U36_10875 PF00893 Small Multidrug Resistance protein E3U36_10900 PF08534 Redoxin E3U36_10905 PF00158 Sigma-54 interaction domain E3U36_10905 PF18024 Helix-turn-helix domain E3U36_10910 PF05128 Domain of unknown function (DUF697) E3U36_10925 PF04024 PspC domain E3U36_10930 PF06667 Phage shock protein B E3U36_10940 PF13737 Transposase DDE domain E3U36_10945 PF04012 PspA/IM30 family E3U36_10955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3U36_10960 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_10965 PF12911 N-terminal TM domain of oligopeptide transport permease C E3U36_10965 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_10970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3U36_10970 PF00005 ABC transporter E3U36_10975 PF00005 ABC transporter E3U36_11015 PF00534 Glycosyl transferases group 1 E3U36_11015 PF13439 Glycosyltransferase Family 4 E3U36_11025 PF13737 Transposase DDE domain E3U36_11035 PF13737 Transposase DDE domain E3U36_11040 PF13737 Transposase DDE domain E3U36_11045 PF03279 Bacterial lipid A biosynthesis acyltransferase E3U36_11055 PF13737 Transposase DDE domain E3U36_11060 PF00762 Ferrochelatase E3U36_11065 PF05191 Adenylate kinase, active site lid E3U36_11070 PF00183 Hsp90 protein E3U36_11070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3U36_11080 PF02575 YbaB/EbfC DNA-binding family E3U36_11085 PF12170 DNA polymerase III tau subunit V interacting with alpha E3U36_11085 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E3U36_11085 PF12169 DNA polymerase III subunits gamma and tau domain III E3U36_11090 PF00156 Phosphoribosyl transferase domain E3U36_11100 PF10689 Protein of unknown function (DUF2496) E3U36_11115 PF02472 Biopolymer transport protein ExbD/TolR E3U36_11130 PF09335 SNARE associated Golgi protein E3U36_11135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3U36_11135 PF02142 MGS-like domain E3U36_11135 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E3U36_11140 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E3U36_11140 PF00117 Glutamine amidotransferase class-I E3U36_11145 PF01113 Dihydrodipicolinate reductase, N-terminus E3U36_11145 PF05173 Dihydrodipicolinate reductase, C-terminus E3U36_11150 PF02401 LytB protein E3U36_11155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3U36_11160 PF01252 Signal peptidase (SPase) II E3U36_11165 PF08264 Anticodon-binding domain of tRNA E3U36_11165 PF06827 Zinc finger found in FPG and IleRS E3U36_11165 PF00133 tRNA synthetases class I (I, L, M and V) E3U36_11170 PF06574 FAD synthetase E3U36_11170 PF01687 Riboflavin kinase E3U36_11175 PF01649 Ribosomal protein S20 E3U36_11185 PF13737 Transposase DDE domain E3U36_11190 PF06965 Na+/H+ antiporter 1 E3U36_11195 PF13737 Transposase DDE domain E3U36_11200 PF13737 Transposase DDE domain E3U36_11215 PF13737 Transposase DDE domain E3U36_11220 PF00793 DAHP synthetase I family E3U36_11230 PF02142 MGS-like domain E3U36_11240 PF08755 Hemimethylated DNA-binding protein YccV like E3U36_11245 PF00708 Acylphosphatase E3U36_11250 PF04358 DsrC like protein E3U36_11280 PF01402 Ribbon-helix-helix protein, copG family E3U36_11285 PF00258 Flavodoxin E3U36_11290 PF01475 Ferric uptake regulator family E3U36_11300 PF13737 Transposase DDE domain E3U36_11310 PF13737 Transposase DDE domain E3U36_11315 PF00675 Insulinase (Peptidase family M16) E3U36_11315 PF05193 Peptidase M16 inactive domain E3U36_11320 PF03631 Virulence factor BrkB E3U36_11340 PF13737 Transposase DDE domain E3U36_11350 PF02108 Flagellar assembly protein FliH E3U36_11355 PF04338 Protein of unknown function, DUF481 E3U36_11370 PF00005 ABC transporter E3U36_11370 PF00664 ABC transporter transmembrane region E3U36_11375 PF00664 ABC transporter transmembrane region E3U36_11375 PF00005 ABC transporter E3U36_11390 PF00582 Universal stress protein family E3U36_11405 PF13737 Transposase DDE domain E3U36_11420 PF01494 FAD binding domain E3U36_11425 PF01494 FAD binding domain E3U36_11430 PF00557 Metallopeptidase family M24 E3U36_11430 PF05195 Aminopeptidase P, N-terminal domain E3U36_11435 PF03695 Uncharacterised protein family (UPF0149) E3U36_11440 PF05164 Cell division protein ZapA E3U36_11465 PF00113 Enolase, C-terminal TIM barrel domain E3U36_11465 PF03952 Enolase, N-terminal domain E3U36_11470 PF06418 CTP synthase N-terminus E3U36_11470 PF00117 Glutamine amidotransferase class-I E3U36_11475 PF03819 MazG nucleotide pyrophosphohydrolase domain E3U36_11485 PF05958 tRNA (Uracil-5-)-methyltransferase E3U36_11485 PF01938 TRAM domain E3U36_11495 PF01966 HD domain E3U36_11495 PF13286 Phosphohydrolase-associated domain E3U36_11500 PF01048 Phosphorylase superfamily E3U36_11505 PF01521 Iron-sulphur cluster biosynthesis E3U36_11510 PF00202 Aminotransferase class-III E3U36_11515 PF00912 Transglycosylase E3U36_11515 PF14814 Bifunctional transglycosylase second domain E3U36_11515 PF00905 Penicillin binding protein transpeptidase domain E3U36_11515 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal E3U36_11520 PF03749 Sugar fermentation stimulation protein RE domain E3U36_11520 PF17746 SfsA N-terminal OB domain E3U36_11525 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3U36_11535 PF01743 Poly A polymerase head domain E3U36_11535 PF12627 Probable RNA and SrmB- binding site of polymerase A E3U36_11535 PF12626 Polymerase A arginine-rich C-terminus E3U36_11540 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3U36_11545 PF13737 Transposase DDE domain E3U36_11555 PF13567 Domain of unknown function (DUF4131) E3U36_11555 PF00753 Metallo-beta-lactamase superfamily E3U36_11555 PF03772 Competence protein E3U36_11560 PF00753 Metallo-beta-lactamase superfamily E3U36_11560 PF03772 Competence protein E3U36_11565 PF00005 ABC transporter E3U36_11565 PF00664 ABC transporter transmembrane region E3U36_11570 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E3U36_11575 PF00313 'Cold-shock' DNA-binding domain E3U36_11580 PF03966 Trm112p-like protein E3U36_11585 PF02348 Cytidylyltransferase E3U36_11600 PF17192 MukF middle domain E3U36_11600 PF17193 MukF C-terminal domain E3U36_11600 PF03882 MukF winged-helix domain E3U36_11605 PF04288 MukE-like family E3U36_11610 PF16330 MukB hinge domain E3U36_11610 PF04310 MukB N-terminal E3U36_11615 PF13737 Transposase DDE domain E3U36_11620 PF07126 Cell-division protein ZapC E3U36_11625 PF13737 Transposase DDE domain E3U36_11640 PF18125 RlmM ferredoxin-like domain E3U36_11640 PF01728 FtsJ-like methyltransferase E3U36_11655 PF13737 Transposase DDE domain E3U36_11660 PF03641 Possible lysine decarboxylase E3U36_11660 PF11892 Domain of unknown function (DUF3412) E3U36_11660 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases E3U36_11665 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term E3U36_11665 PF14489 QueF-like protein E3U36_11670 PF13737 Transposase DDE domain E3U36_11680 PF00849 RNA pseudouridylate synthase E3U36_11685 PF11944 Protein of unknown function (DUF3461) E3U36_11690 PF14602 Hexapeptide repeat of succinyl-transferase E3U36_11690 PF00132 Bacterial transferase hexapeptide (six repeats) E3U36_11690 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E3U36_11695 PF01842 ACT domain E3U36_11695 PF08335 GlnD PII-uridylyltransferase E3U36_11695 PF01966 HD domain E3U36_11700 PF00557 Metallopeptidase family M24 E3U36_11705 PF00318 Ribosomal protein S2 E3U36_11710 PF00889 Elongation factor TS E3U36_11715 PF00696 Amino acid kinase family E3U36_11720 PF01765 Ribosome recycling factor E3U36_11725 PF13288 DXP reductoisomerase C-terminal domain E3U36_11725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E3U36_11725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E3U36_11730 PF01255 Putative undecaprenyl diphosphate synthase E3U36_11740 PF17820 PDZ domain E3U36_11740 PF02163 Peptidase family M50 E3U36_11745 PF07244 Surface antigen variable number repeat E3U36_11745 PF01103 Surface antigen E3U36_11750 PF03938 Outer membrane protein (OmpH-like) E3U36_11755 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3U36_11755 PF00132 Bacterial transferase hexapeptide (six repeats) E3U36_11760 PF07977 FabA-like domain E3U36_11765 PF02684 Lipid-A-disaccharide synthetase E3U36_11770 PF01351 Ribonuclease HII E3U36_11775 PF01336 OB-fold nucleic acid binding domain E3U36_11775 PF02811 PHP domain E3U36_11775 PF14579 Helix-hairpin-helix motif E3U36_11775 PF07733 Bacterial DNA polymerase III alpha NTPase domain E3U36_11775 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E3U36_11780 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E3U36_11785 PF01171 PP-loop family E3U36_11785 PF09179 TilS substrate binding domain E3U36_11785 PF11734 TilS substrate C-terminal domain E3U36_11790 PF07073 Modulator of Rho-dependent transcription termination (ROF) E3U36_11795 PF04170 NlpE N-terminal domain E3U36_11795 PF17185 NlpE C-terminal OB domain E3U36_11800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3U36_11800 PF04073 Aminoacyl-tRNA editing domain E3U36_11800 PF03129 Anticodon binding domain E3U36_11805 PF18389 TrmO C-terminal domain E3U36_11805 PF01980 tRNA-methyltransferase O E3U36_11820 PF00528 Binding-protein-dependent transport system inner membrane component E3U36_11825 PF00005 ABC transporter E3U36_11825 PF09383 NIL domain E3U36_11870 PF04307 LexA-binding, inner membrane-associated putative hydrolase E3U36_11875 PF13419 Haloacid dehalogenase-like hydrolase E3U36_11880 PF14002 YniB-like protein E3U36_11885 PF13737 Transposase DDE domain E3U36_11890 PF13737 Transposase DDE domain E3U36_11895 PF00950 ABC 3 transport family E3U36_11910 PF01297 Zinc-uptake complex component A periplasmic E3U36_11915 PF01464 Transglycosylase SLT domain E3U36_11920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3U36_11920 PF03129 Anticodon binding domain E3U36_11920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3U36_11920 PF02824 TGS domain E3U36_11925 PF05198 Translation initiation factor IF-3, N-terminal domain E3U36_11925 PF00707 Translation initiation factor IF-3, C-terminal domain E3U36_11930 PF01632 Ribosomal protein L35 E3U36_11935 PF00453 Ribosomal protein L20 E3U36_11945 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E3U36_11945 PF01409 tRNA synthetases class II core domain (F) E3U36_11950 PF03147 Ferredoxin-fold anticodon binding domain E3U36_11950 PF03484 tRNA synthetase B5 domain E3U36_11950 PF01588 Putative tRNA binding domain E3U36_11950 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E3U36_11950 PF03483 B3/4 domain E3U36_11955 PF00216 Bacterial DNA-binding protein E3U36_11960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3U36_11965 PF00535 Glycosyl transferase family 2 E3U36_11970 PF01370 NAD dependent epimerase/dehydratase family E3U36_11970 PF00551 Formyl transferase E3U36_11970 PF02911 Formyl transferase, C-terminal domain E3U36_11975 PF01522 Polysaccharide deacetylase E3U36_11980 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase E3U36_11985 PF00892 EamA-like transporter family E3U36_11995 PF00877 NlpC/P60 family E3U36_12005 PF13737 Transposase DDE domain E3U36_12025 PF13728 F plasmid transfer operon protein E3U36_12030 PF06986 Type-1V conjugative transfer system mating pair stabilisation E3U36_12035 PF06986 Type-1V conjugative transfer system mating pair stabilisation E3U36_12090 PF07042 TrfA protein E3U36_12095 PF00216 Bacterial DNA-binding protein E3U36_12125 PF13737 Transposase DDE domain E3U36_12140 PF01815 Rop protein E3U36_12155 PF00011 Hsp20/alpha crystallin family E3U36_12165 PF06146 Phosphate-starvation-inducible E E3U36_12170 PF13737 Transposase DDE domain E3U36_12175 PF00313 'Cold-shock' DNA-binding domain