locus-tag class description NMQ03_00005 PF00308 Bacterial dnaA protein NMQ03_00005 PF08299 Bacterial dnaA protein helix-turn-helix NMQ03_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NMQ03_00010 PF02767 DNA polymerase III beta subunit, central domain NMQ03_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NMQ03_00015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NMQ03_00015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMQ03_00020 PF02463 RecF/RecN/SMC N terminal domain NMQ03_00025 PF05258 Dna[CI] antecedent, DciA NMQ03_00030 PF01751 Toprim domain NMQ03_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_00030 PF00986 DNA gyrase B subunit, carboxyl terminus NMQ03_00030 PF00204 DNA gyrase B NMQ03_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller NMQ03_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A NMQ03_00065 PF00535 Glycosyl transferase family 2 NMQ03_00065 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 NMQ03_00075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NMQ03_00085 PF02627 Carboxymuconolactone decarboxylase family NMQ03_00090 PF03352 Methyladenine glycosylase NMQ03_00095 PF06781 Cell division protein CrgA NMQ03_00110 PF00117 Glutamine amidotransferase class-I NMQ03_00115 PF03793 PASTA domain NMQ03_00115 PF00069 Protein kinase domain NMQ03_00120 PF00069 Protein kinase domain NMQ03_00125 PF00905 Penicillin binding protein transpeptidase domain NMQ03_00130 PF01098 Cell cycle protein NMQ03_00140 PF16697 Inner membrane component of T3SS, cytoplasmic domain NMQ03_00145 PF12401 Protein of unknown function (DUF2662) NMQ03_00145 PF00498 FHA domain NMQ03_00155 PF07729 FCD domain NMQ03_00155 PF00392 Bacterial regulatory proteins, gntR family NMQ03_00160 PF13378 Enolase C-terminal domain-like NMQ03_00160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_00165 PF16884 N-terminal domain of oxidoreductase NMQ03_00165 PF00107 Zinc-binding dehydrogenase NMQ03_00175 PF01593 Flavin containing amine oxidoreductase NMQ03_00195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMQ03_00245 PF01565 FAD binding domain NMQ03_00245 PF04030 D-arabinono-1,4-lactone oxidase NMQ03_00250 PF01425 Amidase NMQ03_00255 PF04371 Porphyromonas-type peptidyl-arginine deiminase NMQ03_00265 PF03193 RsgA GTPase NMQ03_00275 PF07690 Major Facilitator Superfamily NMQ03_00285 PF00990 Diguanylate cyclase, GGDEF domain NMQ03_00285 PF05230 MASE2 domain NMQ03_00290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_00290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_00305 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_00305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_00310 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_00315 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_00320 PF01547 Bacterial extracellular solute-binding protein NMQ03_00325 PF00356 Bacterial regulatory proteins, lacI family NMQ03_00330 PF00356 Bacterial regulatory proteins, lacI family NMQ03_00335 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMQ03_00340 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_00345 PF00005 ABC transporter NMQ03_00350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_00350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_00355 PF01266 FAD dependent oxidoreductase NMQ03_00360 PF01740 STAS domain NMQ03_00360 PF00916 Sulfate permease family NMQ03_00365 PF13411 MerR HTH family regulatory protein NMQ03_00395 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMQ03_00395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMQ03_00405 PF02656 Domain of unknown function (DUF202) NMQ03_00420 PF12706 Beta-lactamase superfamily domain NMQ03_00420 PF00753 Metallo-beta-lactamase superfamily NMQ03_00425 PF00171 Aldehyde dehydrogenase family NMQ03_00435 PF01614 Bacterial transcriptional regulator NMQ03_00435 PF09339 IclR helix-turn-helix domain NMQ03_00440 PF00111 2Fe-2S iron-sulfur cluster binding domain NMQ03_00440 PF00175 Oxidoreductase NAD-binding domain NMQ03_00445 PF00067 Cytochrome P450 NMQ03_00450 PF07690 Major Facilitator Superfamily NMQ03_00450 PF00083 Sugar (and other) transporter NMQ03_00475 PF01970 Tripartite tricarboxylate transporter TctA family NMQ03_00485 PF03737 Aldolase/RraA NMQ03_00515 PF09339 IclR helix-turn-helix domain NMQ03_00515 PF01614 Bacterial transcriptional regulator NMQ03_00520 PF00067 Cytochrome P450 NMQ03_00525 PF02896 PEP-utilising enzyme, TIM barrel domain NMQ03_00525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NMQ03_00525 PF00391 PEP-utilising enzyme, mobile domain NMQ03_00530 PF00501 AMP-binding enzyme NMQ03_00530 PF13193 AMP-binding enzyme C-terminal domain NMQ03_00530 PF00668 Condensation domain NMQ03_00530 PF08241 Methyltransferase domain NMQ03_00530 PF00391 PEP-utilising enzyme, mobile domain NMQ03_00530 PF00550 Phosphopantetheine attachment site NMQ03_00530 PF00975 Thioesterase domain NMQ03_00540 PF00111 2Fe-2S iron-sulfur cluster binding domain NMQ03_00545 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_00545 PF14759 Reductase C-terminal NMQ03_00555 PF00171 Aldehyde dehydrogenase family NMQ03_00570 PF17760 UvrA interaction domain NMQ03_00570 PF00005 ABC transporter NMQ03_00570 PF17755 UvrA DNA-binding domain NMQ03_00595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMQ03_00595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMQ03_00600 PF00083 Sugar (and other) transporter NMQ03_00610 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_00615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMQ03_00625 PF03447 Homoserine dehydrogenase, NAD binding domain NMQ03_00625 PF00742 Homoserine dehydrogenase NMQ03_00625 PF01842 ACT domain NMQ03_00635 PF00356 Bacterial regulatory proteins, lacI family NMQ03_00640 PF01156 Inosine-uridine preferring nucleoside hydrolase NMQ03_00645 PF07690 Major Facilitator Superfamily NMQ03_00650 PF00294 pfkB family carbohydrate kinase NMQ03_00655 PF00356 Bacterial regulatory proteins, lacI family NMQ03_00660 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_00665 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_00680 PF08244 Glycosyl hydrolases family 32 C terminal NMQ03_00680 PF00251 Glycosyl hydrolases family 32 N-terminal domain NMQ03_00685 PF00106 short chain dehydrogenase NMQ03_00710 PF00294 pfkB family carbohydrate kinase NMQ03_00730 PF03466 LysR substrate binding domain NMQ03_00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_00740 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_00745 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_00755 PF01261 Xylose isomerase-like TIM barrel NMQ03_00760 PF05199 GMC oxidoreductase NMQ03_00760 PF00732 GMC oxidoreductase NMQ03_00785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_00785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_00805 PF01325 Iron dependent repressor, N-terminal DNA binding domain NMQ03_00805 PF00480 ROK family NMQ03_00820 PF07690 Major Facilitator Superfamily NMQ03_00830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_00830 PF03466 LysR substrate binding domain NMQ03_00845 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_00855 PF01494 FAD binding domain NMQ03_00870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMQ03_00890 PF11798 IMS family HHH motif NMQ03_00890 PF11799 impB/mucB/samB family C-terminal domain NMQ03_00890 PF00817 impB/mucB/samB family NMQ03_00890 PF13438 Domain of unknown function (DUF4113) NMQ03_00895 PF00717 Peptidase S24-like NMQ03_00930 PF00990 Diguanylate cyclase, GGDEF domain NMQ03_00930 PF01590 GAF domain NMQ03_00930 PF00989 PAS fold NMQ03_00930 PF00563 EAL domain NMQ03_00935 PF00563 EAL domain NMQ03_00935 PF03707 Bacterial signalling protein N terminal repeat NMQ03_00935 PF00990 Diguanylate cyclase, GGDEF domain NMQ03_00940 PF00989 PAS fold NMQ03_00940 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_00940 PF18698 Histidine kinase sensor domain NMQ03_00940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_00940 PF00672 HAMP domain NMQ03_00960 PF02595 Glycerate kinase family NMQ03_00995 PF07676 WD40-like Beta Propeller Repeat NMQ03_01005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_01005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_01010 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_01010 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_01020 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01025 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01045 PF00480 ROK family NMQ03_01045 PF01047 MarR family NMQ03_01065 PF00860 Permease family NMQ03_01070 PF00881 Nitroreductase family NMQ03_01080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMQ03_01080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMQ03_01080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMQ03_01080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMQ03_01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_01090 PF03466 LysR substrate binding domain NMQ03_01095 PF01810 LysE type translocator NMQ03_01105 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NMQ03_01110 PF00392 Bacterial regulatory proteins, gntR family NMQ03_01110 PF07729 FCD domain NMQ03_01120 PF02515 CoA-transferase family III NMQ03_01125 PF01039 Carboxyl transferase domain NMQ03_01130 PF06305 Lipopolysaccharide assembly protein A domain NMQ03_01145 PF00581 Rhodanese-like domain NMQ03_01150 PF00800 Prephenate dehydratase NMQ03_01150 PF01842 ACT domain NMQ03_01160 PF00781 Diacylglycerol kinase catalytic domain NMQ03_01165 PF02403 Seryl-tRNA synthetase N-terminal domain NMQ03_01165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMQ03_01180 PF00300 Histidine phosphatase superfamily (branch 1) NMQ03_01190 PF06628 Catalase-related immune-responsive NMQ03_01190 PF18011 C-terminal domain found in long catalases NMQ03_01190 PF00199 Catalase NMQ03_01195 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase NMQ03_01195 PF09363 XFP C-terminal domain NMQ03_01195 PF09364 XFP N-terminal domain NMQ03_01205 PF00135 Carboxylesterase family NMQ03_01210 PF00719 Inorganic pyrophosphatase NMQ03_01215 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NMQ03_01225 PF09179 TilS substrate binding domain NMQ03_01225 PF01171 PP-loop family NMQ03_01230 PF00156 Phosphoribosyl transferase domain NMQ03_01235 PF17862 AAA+ lid domain NMQ03_01235 PF00004 ATPase family associated with various cellular activities (AAA) NMQ03_01235 PF01434 Peptidase family M41 NMQ03_01240 PF01227 GTP cyclohydrolase I NMQ03_01245 PF00809 Pterin binding enzyme NMQ03_01250 PF02152 Dihydroneopterin aldolase NMQ03_01255 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NMQ03_01280 PF02569 Pantoate-beta-alanine ligase NMQ03_01300 PF01965 DJ-1/PfpI family NMQ03_01305 PF07690 Major Facilitator Superfamily NMQ03_01315 PF00440 Bacterial regulatory proteins, tetR family NMQ03_01315 PF17932 Tetracyclin repressor-like, C-terminal domain NMQ03_01320 PF13520 Amino acid permease NMQ03_01330 PF09347 Domain of unknown function (DUF1989) NMQ03_01340 PF01425 Amidase NMQ03_01350 PF01336 OB-fold nucleic acid binding domain NMQ03_01350 PF00152 tRNA synthetases class II (D, K and N) NMQ03_01360 PF11774 Lsr2 NMQ03_01365 PF02861 Clp amino terminal domain, pathogenicity island component NMQ03_01365 PF07724 AAA domain (Cdc48 subfamily) NMQ03_01365 PF17871 AAA lid domain NMQ03_01365 PF00004 ATPase family associated with various cellular activities (AAA) NMQ03_01365 PF10431 C-terminal, D2-small domain, of ClpB protein NMQ03_01370 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NMQ03_01370 PF07676 WD40-like Beta Propeller Repeat NMQ03_01370 PF00326 Prolyl oligopeptidase family NMQ03_01375 PF00583 Acetyltransferase (GNAT) family NMQ03_01380 PF02733 Dak1 domain NMQ03_01385 PF02734 DAK2 domain NMQ03_01390 PF03610 PTS system fructose IIA component NMQ03_01410 PF00633 Helix-hairpin-helix motif NMQ03_01410 PF00730 HhH-GPD superfamily base excision DNA repair protein NMQ03_01420 PF10635 DisA bacterial checkpoint controller linker region NMQ03_01420 PF00633 Helix-hairpin-helix motif NMQ03_01420 PF02457 DisA bacterial checkpoint controller nucleotide-binding NMQ03_01435 PF00009 Elongation factor Tu GTP binding domain NMQ03_01435 PF16658 Class II release factor RF3, C-terminal domain NMQ03_01440 PF00109 Beta-ketoacyl synthase, N-terminal domain NMQ03_01440 PF02801 Beta-ketoacyl synthase, C-terminal domain NMQ03_01455 PF13426 PAS domain NMQ03_01455 PF00672 HAMP domain NMQ03_01455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_01455 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_01460 PF18073 Rubredoxin metal binding domain NMQ03_01470 PF12849 PBP superfamily domain NMQ03_01475 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01480 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01485 PF00005 ABC transporter NMQ03_01500 PF01384 Phosphate transporter family NMQ03_01530 PF00356 Bacterial regulatory proteins, lacI family NMQ03_01545 PF04542 Sigma-70 region 2 NMQ03_01545 PF08281 Sigma-70, region 4 NMQ03_01560 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NMQ03_01570 PF00356 Bacterial regulatory proteins, lacI family NMQ03_01575 PF00857 Isochorismatase family NMQ03_01580 PF00547 Urease, gamma subunit NMQ03_01585 PF00699 Urease beta subunit NMQ03_01590 PF00449 Urease alpha-subunit, N-terminal domain NMQ03_01590 PF01979 Amidohydrolase family NMQ03_01595 PF02814 UreE urease accessory protein, N-terminal domain NMQ03_01600 PF01730 UreF NMQ03_01605 PF02492 CobW/HypB/UreG, nucleotide-binding domain NMQ03_01610 PF01774 UreD urease accessory protein NMQ03_01615 PF03824 High-affinity nickel-transport protein NMQ03_01630 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01635 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01640 PF00232 Glycosyl hydrolase family 1 NMQ03_01645 PF00356 Bacterial regulatory proteins, lacI family NMQ03_01655 PF00392 Bacterial regulatory proteins, gntR family NMQ03_01655 PF07729 FCD domain NMQ03_01660 PF02780 Transketolase, C-terminal domain NMQ03_01660 PF02779 Transketolase, pyrimidine binding domain NMQ03_01665 PF00456 Transketolase, thiamine diphosphate binding domain NMQ03_01670 PF07690 Major Facilitator Superfamily NMQ03_01670 PF00083 Sugar (and other) transporter NMQ03_01690 PF02502 Ribose/Galactose Isomerase NMQ03_01705 PF00135 Carboxylesterase family NMQ03_01720 PF00005 ABC transporter NMQ03_01730 PF00582 Universal stress protein family NMQ03_01740 PF01156 Inosine-uridine preferring nucleoside hydrolase NMQ03_01745 PF00232 Glycosyl hydrolase family 1 NMQ03_01750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMQ03_01755 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMQ03_01760 PF00005 ABC transporter NMQ03_01765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMQ03_01765 PF00005 ABC transporter NMQ03_01770 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain NMQ03_01770 PF08531 Alpha-L-rhamnosidase N-terminal domain NMQ03_01770 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain NMQ03_01770 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain NMQ03_01780 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NMQ03_01780 PF04616 Glycosyl hydrolases family 43 NMQ03_01790 PF09339 IclR helix-turn-helix domain NMQ03_01790 PF01614 Bacterial transcriptional regulator NMQ03_01795 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain NMQ03_01795 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain NMQ03_01795 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain NMQ03_01795 PF08531 Alpha-L-rhamnosidase N-terminal domain NMQ03_01805 PF00135 Carboxylesterase family NMQ03_01820 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01825 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_01830 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_01830 PF13378 Enolase C-terminal domain-like NMQ03_01835 PF01081 KDPG and KHG aldolase NMQ03_01840 PF00294 pfkB family carbohydrate kinase NMQ03_01845 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_01845 PF13378 Enolase C-terminal domain-like NMQ03_01850 PF13847 Methyltransferase domain NMQ03_01875 PF08281 Sigma-70, region 4 NMQ03_01875 PF04542 Sigma-70 region 2 NMQ03_01895 PF00106 short chain dehydrogenase NMQ03_01905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_01905 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_01905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_01910 PF01575 MaoC like domain NMQ03_01915 PF00083 Sugar (and other) transporter NMQ03_01915 PF07690 Major Facilitator Superfamily NMQ03_01920 PF00501 AMP-binding enzyme NMQ03_01920 PF13193 AMP-binding enzyme C-terminal domain NMQ03_01925 PF00356 Bacterial regulatory proteins, lacI family NMQ03_01930 PF00701 Dihydrodipicolinate synthetase family NMQ03_01935 PF07690 Major Facilitator Superfamily NMQ03_01940 PF01758 Sodium Bile acid symporter family NMQ03_01945 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NMQ03_01945 PF00384 Molybdopterin oxidoreductase NMQ03_01945 PF01568 Molydopterin dinucleotide binding domain NMQ03_01960 PF07859 alpha/beta hydrolase fold NMQ03_01965 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_01970 PF01494 FAD binding domain NMQ03_01990 PF00723 Glycosyl hydrolases family 15 NMQ03_02000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMQ03_02000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMQ03_02010 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_02010 PF00107 Zinc-binding dehydrogenase NMQ03_02020 PF00892 EamA-like transporter family NMQ03_02035 PF00248 Aldo/keto reductase family NMQ03_02045 PF02446 4-alpha-glucanotransferase NMQ03_02050 PF00128 Alpha amylase, catalytic domain NMQ03_02050 PF02806 Alpha amylase, C-terminal all-beta domain NMQ03_02050 PF03714 Bacterial pullanase-associated domain NMQ03_02060 PF05175 Methyltransferase small domain NMQ03_02060 PF17827 PrmC N-terminal domain NMQ03_02070 PF04226 Transglycosylase associated protein NMQ03_02075 PF00248 Aldo/keto reductase family NMQ03_02080 PF13193 AMP-binding enzyme C-terminal domain NMQ03_02080 PF00501 AMP-binding enzyme NMQ03_02085 PF00108 Thiolase, N-terminal domain NMQ03_02085 PF02803 Thiolase, C-terminal domain NMQ03_02090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_02090 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_02090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_02095 PF17754 MftR C-terminal domain NMQ03_02095 PF00440 Bacterial regulatory proteins, tetR family NMQ03_02105 PF00248 Aldo/keto reductase family NMQ03_02110 PF00248 Aldo/keto reductase family NMQ03_02125 PF07311 Dodecin NMQ03_02130 PF00392 Bacterial regulatory proteins, gntR family NMQ03_02130 PF07729 FCD domain NMQ03_02140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMQ03_02140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMQ03_02180 PF00106 short chain dehydrogenase NMQ03_02190 PF00083 Sugar (and other) transporter NMQ03_02200 PF04679 ATP dependent DNA ligase C terminal region NMQ03_02200 PF13298 DNA polymerase Ligase (LigD) NMQ03_02200 PF01068 ATP dependent DNA ligase domain NMQ03_02205 PF02735 Ku70/Ku80 beta-barrel domain NMQ03_02210 PF08241 Methyltransferase domain NMQ03_02225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMQ03_02225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMQ03_02230 PF00294 pfkB family carbohydrate kinase NMQ03_02250 PF13419 Haloacid dehalogenase-like hydrolase NMQ03_02255 PF03636 Glycosyl hydrolase family 65, N-terminal domain NMQ03_02255 PF03633 Glycosyl hydrolase family 65, C-terminal domain NMQ03_02255 PF03632 Glycosyl hydrolase family 65 central catalytic domain NMQ03_02260 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NMQ03_02260 PF04055 Radical SAM superfamily NMQ03_02270 PF00464 Serine hydroxymethyltransferase NMQ03_02275 PF01597 Glycine cleavage H-protein NMQ03_02285 PF02347 Glycine cleavage system P-protein NMQ03_02290 PF00324 Amino acid permease NMQ03_02295 PF00551 Formyl transferase NMQ03_02310 PF03746 LamB/YcsF family NMQ03_02320 PF04286 Protein of unknown function (DUF445) NMQ03_02325 PF03009 Glycerophosphoryl diester phosphodiesterase family NMQ03_02330 PF02515 CoA-transferase family III NMQ03_02365 PF01910 Thiamine-binding protein NMQ03_02370 PF01596 O-methyltransferase NMQ03_02395 PF03631 Virulence factor BrkB NMQ03_02425 PF04545 Sigma-70, region 4 NMQ03_02425 PF04539 Sigma-70 region 3 NMQ03_02425 PF04542 Sigma-70 region 2 NMQ03_02435 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NMQ03_02445 PF13439 Glycosyltransferase Family 4 NMQ03_02445 PF00534 Glycosyl transferases group 1 NMQ03_02450 PF13580 SIS domain NMQ03_02455 PF01467 Cytidylyltransferase-like NMQ03_02455 PF00294 pfkB family carbohydrate kinase NMQ03_02460 PF00106 short chain dehydrogenase NMQ03_02465 PF00171 Aldehyde dehydrogenase family NMQ03_02470 PF01467 Cytidylyltransferase-like NMQ03_02470 PF00294 pfkB family carbohydrate kinase NMQ03_02480 PF03466 LysR substrate binding domain NMQ03_02480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_02485 PF00083 Sugar (and other) transporter NMQ03_02500 PF01638 HxlR-like helix-turn-helix NMQ03_02505 PF05368 NmrA-like family NMQ03_02515 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_02520 PF00005 ABC transporter NMQ03_02525 PF01614 Bacterial transcriptional regulator NMQ03_02525 PF09339 IclR helix-turn-helix domain NMQ03_02530 PF02515 CoA-transferase family III NMQ03_02535 PF00682 HMGL-like NMQ03_02540 PF00324 Amino acid permease NMQ03_02550 PF09339 IclR helix-turn-helix domain NMQ03_02550 PF01614 Bacterial transcriptional regulator NMQ03_02555 PF01175 Urocanase Rossmann-like domain NMQ03_02555 PF17391 Urocanase N-terminal domain NMQ03_02555 PF17392 Urocanase C-terminal domain NMQ03_02560 PF00221 Aromatic amino acid lyase NMQ03_02575 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_02580 PF00582 Universal stress protein family NMQ03_02585 PF01970 Tripartite tricarboxylate transporter TctA family NMQ03_02600 PF00989 PAS fold NMQ03_02600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_02600 PF17203 Single cache domain 3 NMQ03_02600 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NMQ03_02605 PF00072 Response regulator receiver domain NMQ03_02605 PF04703 FaeA-like protein NMQ03_02610 PF00491 Arginase family NMQ03_02620 PF00860 Permease family NMQ03_02635 PF00582 Universal stress protein family NMQ03_02640 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NMQ03_02640 PF00391 PEP-utilising enzyme, mobile domain NMQ03_02650 PF00005 ABC transporter NMQ03_02665 PF01545 Cation efflux family NMQ03_02685 PF02811 PHP domain NMQ03_02685 PF14791 DNA polymerase beta thumb NMQ03_02685 PF14716 Helix-hairpin-helix domain NMQ03_02705 PF02435 Levansucrase/Invertase NMQ03_02735 PF00128 Alpha amylase, catalytic domain NMQ03_02740 PF01547 Bacterial extracellular solute-binding protein NMQ03_02745 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_02750 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_02760 PF00356 Bacterial regulatory proteins, lacI family NMQ03_02775 PF00378 Enoyl-CoA hydratase/isomerase NMQ03_02780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMQ03_02780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMQ03_02785 PF00378 Enoyl-CoA hydratase/isomerase NMQ03_02795 PF00376 MerR family regulatory protein NMQ03_02795 PF09278 MerR, DNA binding NMQ03_02805 PF00313 'Cold-shock' DNA-binding domain NMQ03_02810 PF00196 Bacterial regulatory proteins, luxR family NMQ03_02810 PF00072 Response regulator receiver domain NMQ03_02815 PF07730 Histidine kinase NMQ03_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_02825 PF12796 Ankyrin repeats (3 copies) NMQ03_02830 PF00108 Thiolase, N-terminal domain NMQ03_02830 PF02803 Thiolase, C-terminal domain NMQ03_02835 PF01144 Coenzyme A transferase NMQ03_02840 PF02667 Short chain fatty acid transporter NMQ03_02845 PF01144 Coenzyme A transferase NMQ03_02855 PF02540 NAD synthase NMQ03_02865 PF00156 Phosphoribosyl transferase domain NMQ03_02885 PF13344 Haloacid dehalogenase-like hydrolase NMQ03_02890 PF00588 SpoU rRNA Methylase family NMQ03_02890 PF02527 rRNA small subunit methyltransferase G NMQ03_02895 PF01116 Fructose-bisphosphate aldolase class-II NMQ03_02930 PF04542 Sigma-70 region 2 NMQ03_02930 PF04545 Sigma-70, region 4 NMQ03_02940 PF13380 CoA binding domain NMQ03_02945 PF01053 Cys/Met metabolism PLP-dependent enzyme NMQ03_02950 PF00296 Luciferase-like monooxygenase NMQ03_02955 PF13193 AMP-binding enzyme C-terminal domain NMQ03_02955 PF16177 Acetyl-coenzyme A synthetase N-terminus NMQ03_02955 PF00501 AMP-binding enzyme NMQ03_02960 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_02970 PF00005 ABC transporter NMQ03_02975 PF13380 CoA binding domain NMQ03_02985 PF04237 YjbR NMQ03_03010 PF00586 AIR synthase related protein, N-terminal domain NMQ03_03010 PF02769 AIR synthase related protein, C-terminal domain NMQ03_03010 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NMQ03_03030 PF00082 Subtilase family NMQ03_03030 PF05922 Peptidase inhibitor I9 NMQ03_03030 PF02225 PA domain NMQ03_03030 PF13860 FlgD Ig-like domain NMQ03_03050 PF01047 MarR family NMQ03_03065 PF00696 Amino acid kinase family NMQ03_03065 PF01842 ACT domain NMQ03_03065 PF13840 ACT domain NMQ03_03070 PF02132 RecR protein NMQ03_03070 PF13662 Toprim domain NMQ03_03075 PF12169 DNA polymerase III subunits gamma and tau domain III NMQ03_03105 PF00255 Glutathione peroxidase NMQ03_03110 PF00149 Calcineurin-like phosphoesterase NMQ03_03115 PF17103 Stealth protein CR4, conserved region 4 NMQ03_03115 PF17102 Stealth protein CR3, conserved region 3 NMQ03_03115 PF11380 Stealth protein CR2, conserved region 2 NMQ03_03115 PF17101 Stealth protein CR1, conserved region 1 NMQ03_03135 PF13977 BetI-type transcriptional repressor, C-terminal NMQ03_03135 PF00440 Bacterial regulatory proteins, tetR family NMQ03_03145 PF13439 Glycosyltransferase Family 4 NMQ03_03160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMQ03_03160 PF01842 ACT domain NMQ03_03160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMQ03_03175 PF00463 Isocitrate lyase family NMQ03_03180 PF01381 Helix-turn-helix NMQ03_03190 PF08521 Two-component sensor kinase N-terminal NMQ03_03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_03190 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_03195 PF00486 Transcriptional regulatory protein, C terminal NMQ03_03195 PF00072 Response regulator receiver domain NMQ03_03200 PF00083 Sugar (and other) transporter NMQ03_03215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_03215 PF00205 Thiamine pyrophosphate enzyme, central domain NMQ03_03215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_03220 PF08543 Phosphomethylpyrimidine kinase NMQ03_03235 PF01702 Queuine tRNA-ribosyltransferase NMQ03_03265 PF08244 Glycosyl hydrolases family 32 C terminal NMQ03_03265 PF00251 Glycosyl hydrolases family 32 N-terminal domain NMQ03_03275 PF00106 short chain dehydrogenase NMQ03_03280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_03280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_03280 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_03295 PF00311 Phosphoenolpyruvate carboxylase NMQ03_03305 PF09335 SNARE associated Golgi protein NMQ03_03310 PF01661 Macro domain NMQ03_03315 PF00849 RNA pseudouridylate synthase NMQ03_03340 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NMQ03_03340 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NMQ03_03350 PF00355 Rieske [2Fe-2S] domain NMQ03_03380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_03380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_03380 PF00205 Thiamine pyrophosphate enzyme, central domain NMQ03_03385 PF00324 Amino acid permease NMQ03_03390 PF04960 Glutaminase NMQ03_03395 PF06018 CodY GAF-like domain NMQ03_03395 PF17853 GGDEF-like domain NMQ03_03395 PF13556 PucR C-terminal helix-turn-helix domain NMQ03_03405 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_03410 PF07883 Cupin domain NMQ03_03420 PF07690 Major Facilitator Superfamily NMQ03_03425 PF01494 FAD binding domain NMQ03_03435 PF00296 Luciferase-like monooxygenase NMQ03_03445 PF00356 Bacterial regulatory proteins, lacI family NMQ03_03455 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_03460 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_03470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_03470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_03480 PF02614 Glucuronate isomerase NMQ03_03485 PF01232 Mannitol dehydrogenase Rossmann domain NMQ03_03485 PF08125 Mannitol dehydrogenase C-terminal domain NMQ03_03490 PF13378 Enolase C-terminal domain-like NMQ03_03490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_03495 PF00933 Glycosyl hydrolase family 3 N terminal domain NMQ03_03515 PF13302 Acetyltransferase (GNAT) domain NMQ03_03520 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_03520 PF00107 Zinc-binding dehydrogenase NMQ03_03535 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_03535 PF00107 Zinc-binding dehydrogenase NMQ03_03545 PF13439 Glycosyltransferase Family 4 NMQ03_03545 PF00534 Glycosyl transferases group 1 NMQ03_03550 PF14437 MafB19-like deaminase NMQ03_03555 PF01569 PAP2 superfamily NMQ03_03575 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NMQ03_03590 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_03590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_03590 PF00672 HAMP domain NMQ03_03595 PF00072 Response regulator receiver domain NMQ03_03595 PF00486 Transcriptional regulatory protein, C terminal NMQ03_03605 PF00072 Response regulator receiver domain NMQ03_03605 PF00486 Transcriptional regulatory protein, C terminal NMQ03_03615 PF03466 LysR substrate binding domain NMQ03_03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_03620 PF00892 EamA-like transporter family NMQ03_03625 PF00440 Bacterial regulatory proteins, tetR family NMQ03_03625 PF08361 MAATS-type transcriptional repressor, C-terminal region NMQ03_03640 PF00403 Heavy-metal-associated domain NMQ03_03640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMQ03_03640 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_03650 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NMQ03_03650 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NMQ03_03655 PF00970 Oxidoreductase FAD-binding domain NMQ03_03655 PF00042 Globin NMQ03_03655 PF00175 Oxidoreductase NAD-binding domain NMQ03_03660 PF02082 Transcriptional regulator NMQ03_03670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMQ03_03670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMQ03_03670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMQ03_03670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMQ03_03675 PF09382 RQC domain NMQ03_03675 PF00270 DEAD/DEAH box helicase NMQ03_03675 PF16124 RecQ zinc-binding NMQ03_03675 PF00570 HRDC domain NMQ03_03675 PF00271 Helicase conserved C-terminal domain NMQ03_03680 PF07690 Major Facilitator Superfamily NMQ03_03695 PF00326 Prolyl oligopeptidase family NMQ03_03695 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NMQ03_03705 PF02872 5'-nucleotidase, C-terminal domain NMQ03_03705 PF00149 Calcineurin-like phosphoesterase NMQ03_03715 PF00550 Phosphopantetheine attachment site NMQ03_03715 PF08659 KR domain NMQ03_03715 PF02801 Beta-ketoacyl synthase, C-terminal domain NMQ03_03715 PF00109 Beta-ketoacyl synthase, N-terminal domain NMQ03_03715 PF16197 Ketoacyl-synthetase C-terminal extension NMQ03_03715 PF14765 Polyketide synthase dehydratase NMQ03_03715 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_03715 PF00698 Acyl transferase domain NMQ03_03725 PF02687 FtsX-like permease family NMQ03_03725 PF12704 MacB-like periplasmic core domain NMQ03_03725 PF00005 ABC transporter NMQ03_03735 PF02554 Carbon starvation protein CstA NMQ03_03735 PF13722 5TM C-terminal transporter carbon starvation CstA NMQ03_03745 PF10759 Protein of unknown function (DUF2587) NMQ03_03755 PF00248 Aldo/keto reductase family NMQ03_03775 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_03810 PF00561 alpha/beta hydrolase fold NMQ03_03815 PF12169 DNA polymerase III subunits gamma and tau domain III NMQ03_03820 PF02223 Thymidylate kinase NMQ03_03825 PF01053 Cys/Met metabolism PLP-dependent enzyme NMQ03_03840 PF00300 Histidine phosphatase superfamily (branch 1) NMQ03_03845 PF01895 PhoU domain NMQ03_03850 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_03855 PF00072 Response regulator receiver domain NMQ03_03855 PF00486 Transcriptional regulatory protein, C terminal NMQ03_03865 PF02559 CarD-like/TRCF domain NMQ03_03870 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NMQ03_03875 PF02542 YgbB family NMQ03_03880 PF09190 DALR domain NMQ03_03880 PF01406 tRNA synthetases class I (C) catalytic domain NMQ03_03885 PF08032 RNA 2'-O ribose methyltransferase substrate binding NMQ03_03885 PF00588 SpoU rRNA Methylase family NMQ03_03890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NMQ03_03890 PF00128 Alpha amylase, catalytic domain NMQ03_03895 PF00545 ribonuclease NMQ03_03905 PF00205 Thiamine pyrophosphate enzyme, central domain NMQ03_03905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_03905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_03910 PF00343 Carbohydrate phosphorylase NMQ03_03910 PF11897 Protein of unknown function (DUF3417) NMQ03_03915 PF11896 Domain of unknown function (DUF3416) NMQ03_03920 PF16657 Maltogenic Amylase, C-terminal domain NMQ03_03920 PF00128 Alpha amylase, catalytic domain NMQ03_03925 PF00128 Alpha amylase, catalytic domain NMQ03_03925 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NMQ03_03925 PF02806 Alpha amylase, C-terminal all-beta domain NMQ03_03950 PF00356 Bacterial regulatory proteins, lacI family NMQ03_03955 PF00128 Alpha amylase, catalytic domain NMQ03_03960 PF02913 FAD linked oxidases, C-terminal domain NMQ03_03960 PF01565 FAD binding domain NMQ03_03970 PF00005 ABC transporter NMQ03_03970 PF17912 MalK OB fold domain NMQ03_03980 PF00982 Glycosyltransferase family 20 NMQ03_04000 PF00679 Elongation factor G C-terminus NMQ03_04000 PF14492 Elongation Factor G, domain II NMQ03_04000 PF03764 Elongation factor G, domain IV NMQ03_04000 PF00009 Elongation factor Tu GTP binding domain NMQ03_04000 PF03144 Elongation factor Tu domain 2 NMQ03_04010 PF02653 Branched-chain amino acid transport system / permease component NMQ03_04015 PF00005 ABC transporter NMQ03_04020 PF13407 Periplasmic binding protein domain NMQ03_04025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMQ03_04025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMQ03_04030 PF00596 Class II Aldolase and Adducin N-terminal domain NMQ03_04035 PF11762 L-arabinose isomerase C-terminal domain NMQ03_04035 PF02610 L-arabinose isomerase NMQ03_04040 PF00356 Bacterial regulatory proteins, lacI family NMQ03_04060 PF13520 Amino acid permease NMQ03_04065 PF00210 Ferritin-like domain NMQ03_04070 PF07690 Major Facilitator Superfamily NMQ03_04075 PF00440 Bacterial regulatory proteins, tetR family NMQ03_04080 PF02347 Glycine cleavage system P-protein NMQ03_04085 PF08669 Glycine cleavage T-protein C-terminal barrel domain NMQ03_04085 PF01571 Aminomethyltransferase folate-binding domain NMQ03_04090 PF03313 Serine dehydratase alpha chain NMQ03_04090 PF03315 Serine dehydratase beta chain NMQ03_04095 PF03073 TspO/MBR family NMQ03_04115 PF08021 Siderophore-interacting FAD-binding domain NMQ03_04115 PF04954 Siderophore-interacting protein NMQ03_04120 PF03167 Uracil DNA glycosylase superfamily NMQ03_04135 PF00313 'Cold-shock' DNA-binding domain NMQ03_04145 PF00118 TCP-1/cpn60 chaperonin family NMQ03_04150 PF13416 Bacterial extracellular solute-binding protein NMQ03_04155 PF00075 RNase H NMQ03_04165 PF00672 HAMP domain NMQ03_04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_04165 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_04170 PF00072 Response regulator receiver domain NMQ03_04170 PF00486 Transcriptional regulatory protein, C terminal NMQ03_04190 PF00271 Helicase conserved C-terminal domain NMQ03_04190 PF04851 Type III restriction enzyme, res subunit NMQ03_04205 PF00313 'Cold-shock' DNA-binding domain NMQ03_04210 PF11228 Protein of unknown function (DUF3027) NMQ03_04215 PF00266 Aminotransferase class-V NMQ03_04220 PF18357 Diphteria toxin repressor SH3 domain NMQ03_04220 PF02742 Iron dependent repressor, metal binding and dimerisation domain NMQ03_04220 PF01325 Iron dependent repressor, N-terminal DNA binding domain NMQ03_04225 PF04225 Opacity-associated protein A LysM-like domain NMQ03_04225 PF01551 Peptidase family M23 NMQ03_04230 PF08239 Bacterial SH3 domain NMQ03_04230 PF00877 NlpC/P60 family NMQ03_04230 PF01476 LysM domain NMQ03_04235 PF00877 NlpC/P60 family NMQ03_04245 PF12804 MobA-like NTP transferase domain NMQ03_04260 PF02634 FdhD/NarQ family NMQ03_04280 PF00005 ABC transporter NMQ03_04285 PF00664 ABC transporter transmembrane region NMQ03_04285 PF00005 ABC transporter NMQ03_04290 PF00293 NUDIX domain NMQ03_04315 PF00459 Inositol monophosphatase family NMQ03_04320 PF00580 UvrD/REP helicase N-terminal domain NMQ03_04320 PF13361 UvrD-like helicase C-terminal domain NMQ03_04330 PF08442 ATP-grasp domain NMQ03_04330 PF00549 CoA-ligase NMQ03_04335 PF00549 CoA-ligase NMQ03_04335 PF02629 CoA binding domain NMQ03_04340 PF00392 Bacterial regulatory proteins, gntR family NMQ03_04345 PF07690 Major Facilitator Superfamily NMQ03_04360 PF01261 Xylose isomerase-like TIM barrel NMQ03_04365 PF02733 Dak1 domain NMQ03_04365 PF02734 DAK2 domain NMQ03_04370 PF02502 Ribose/Galactose Isomerase NMQ03_04375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMQ03_04375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMQ03_04390 PF00121 Triosephosphate isomerase NMQ03_04410 PF00294 pfkB family carbohydrate kinase NMQ03_04420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_04420 PF00205 Thiamine pyrophosphate enzyme, central domain NMQ03_04420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_04425 PF00171 Aldehyde dehydrogenase family NMQ03_04430 PF01261 Xylose isomerase-like TIM barrel NMQ03_04435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_04435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_04440 PF01261 Xylose isomerase-like TIM barrel NMQ03_04445 PF00083 Sugar (and other) transporter NMQ03_04455 PF02653 Branched-chain amino acid transport system / permease component NMQ03_04460 PF00005 ABC transporter NMQ03_04470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_04470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_04475 PF01261 Xylose isomerase-like TIM barrel NMQ03_04480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_04480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_04485 PF01047 MarR family NMQ03_04490 PF07690 Major Facilitator Superfamily NMQ03_04495 PF04962 KduI/IolB family NMQ03_04500 PF00392 Bacterial regulatory proteins, gntR family NMQ03_04500 PF07702 UTRA domain NMQ03_04520 PF00474 Sodium:solute symporter family NMQ03_04525 PF07883 Cupin domain NMQ03_04525 PF01381 Helix-turn-helix NMQ03_04535 PF00491 Arginase family NMQ03_04540 PF00205 Thiamine pyrophosphate enzyme, central domain NMQ03_04540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_04540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_04550 PF07690 Major Facilitator Superfamily NMQ03_04555 PF00664 ABC transporter transmembrane region NMQ03_04555 PF00005 ABC transporter NMQ03_04560 PF00664 ABC transporter transmembrane region NMQ03_04560 PF00005 ABC transporter NMQ03_04575 PF12102 Domain of unknown function (DUF3578) NMQ03_04575 PF07728 AAA domain (dynein-related subfamily) NMQ03_04585 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_04585 PF18698 Histidine kinase sensor domain NMQ03_04585 PF00672 HAMP domain NMQ03_04585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_04590 PF00072 Response regulator receiver domain NMQ03_04590 PF00486 Transcriptional regulatory protein, C terminal NMQ03_04600 PF02156 Glycosyl hydrolase family 26 NMQ03_04600 PF00404 Dockerin type I domain NMQ03_04600 PF00150 Cellulase (glycosyl hydrolase family 5) NMQ03_04600 PF03425 Carbohydrate binding domain (family 11) NMQ03_04605 PF03852 DNA mismatch endonuclease Vsr NMQ03_04630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMQ03_04640 PF09371 Tex-like protein N-terminal domain NMQ03_04640 PF16921 Tex protein YqgF-like domain NMQ03_04640 PF00575 S1 RNA binding domain NMQ03_04640 PF17674 HHH domain NMQ03_04670 PF01370 NAD dependent epimerase/dehydratase family NMQ03_04685 PF07501 G5 domain NMQ03_04685 PF06737 Transglycosylase-like domain NMQ03_04685 PF03990 G5-linked-Ubiquitin-like domain NMQ03_04690 PF00962 Adenosine/AMP deaminase NMQ03_04695 PF02903 Alpha amylase, N-terminal ig-like domain NMQ03_04695 PF00128 Alpha amylase, catalytic domain NMQ03_04700 PF00708 Acylphosphatase NMQ03_04710 PF03741 Integral membrane protein TerC family NMQ03_04715 PF00570 HRDC domain NMQ03_04715 PF09382 RQC domain NMQ03_04715 PF00270 DEAD/DEAH box helicase NMQ03_04715 PF16124 RecQ zinc-binding NMQ03_04715 PF00271 Helicase conserved C-terminal domain NMQ03_04720 PF00248 Aldo/keto reductase family NMQ03_04725 PF00107 Zinc-binding dehydrogenase NMQ03_04725 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_04740 PF07690 Major Facilitator Superfamily NMQ03_04745 PF01738 Dienelactone hydrolase family NMQ03_04755 PF03471 Transporter associated domain NMQ03_04755 PF00571 CBS domain NMQ03_04755 PF01595 Cyclin M transmembrane N-terminal domain NMQ03_04795 PF07690 Major Facilitator Superfamily NMQ03_04810 PF00171 Aldehyde dehydrogenase family NMQ03_04815 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_04820 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_04830 PF01791 DeoC/LacD family aldolase NMQ03_04840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_04840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_04845 PF00455 DeoR C terminal sensor domain NMQ03_04845 PF08220 DeoR-like helix-turn-helix domain NMQ03_04850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMQ03_04880 PF05977 Transmembrane secretion effector NMQ03_04885 PF01047 MarR family NMQ03_04930 PF08241 Methyltransferase domain NMQ03_04940 PF03746 LamB/YcsF family NMQ03_04945 PF02626 Carboxyltransferase domain, subdomain A and B NMQ03_04950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMQ03_04950 PF00364 Biotin-requiring enzyme NMQ03_04950 PF00289 Biotin carboxylase, N-terminal domain NMQ03_04950 PF02785 Biotin carboxylase C-terminal domain NMQ03_04995 PF01565 FAD binding domain NMQ03_04995 PF02913 FAD linked oxidases, C-terminal domain NMQ03_05000 PF00392 Bacterial regulatory proteins, gntR family NMQ03_05000 PF07729 FCD domain NMQ03_05005 PF02652 L-lactate permease NMQ03_05010 PF02754 Cysteine-rich domain NMQ03_05015 PF13183 4Fe-4S dicluster domain NMQ03_05015 PF11870 Domain of unknown function (DUF3390) NMQ03_05015 PF02589 LUD domain NMQ03_05020 PF02589 LUD domain NMQ03_05025 PF03618 Kinase/pyrophosphorylase NMQ03_05030 PF00391 PEP-utilising enzyme, mobile domain NMQ03_05030 PF02896 PEP-utilising enzyme, TIM barrel domain NMQ03_05030 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NMQ03_05065 PF01070 FMN-dependent dehydrogenase NMQ03_05075 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_05080 PF00005 ABC transporter NMQ03_05140 PF03741 Integral membrane protein TerC family NMQ03_05145 PF00753 Metallo-beta-lactamase superfamily NMQ03_05145 PF10996 Beta-Casp domain NMQ03_05145 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NMQ03_05150 PF00582 Universal stress protein family NMQ03_05180 PF06736 Protein of unknown function (DUF1211) NMQ03_05190 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NMQ03_05190 PF00391 PEP-utilising enzyme, mobile domain NMQ03_05210 PF02626 Carboxyltransferase domain, subdomain A and B NMQ03_05215 PF02682 Carboxyltransferase domain, subdomain C and D NMQ03_05220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMQ03_05220 PF00289 Biotin carboxylase, N-terminal domain NMQ03_05220 PF02785 Biotin carboxylase C-terminal domain NMQ03_05225 PF00364 Biotin-requiring enzyme NMQ03_05230 PF03746 LamB/YcsF family NMQ03_05235 PF17853 GGDEF-like domain NMQ03_05235 PF13556 PucR C-terminal helix-turn-helix domain NMQ03_05240 PF00356 Bacterial regulatory proteins, lacI family NMQ03_05245 PF00710 Asparaginase, N-terminal NMQ03_05245 PF17763 Glutaminase/Asparaginase C-terminal domain NMQ03_05250 PF01522 Polysaccharide deacetylase NMQ03_05275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMQ03_05275 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_05285 PF02342 TerD domain NMQ03_05295 PF05816 Toxic anion resistance protein (TelA) NMQ03_05300 PF02342 TerD domain NMQ03_05305 PF02342 TerD domain NMQ03_05315 PF10138 vWA found in TerF C terminus NMQ03_05335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_05335 PF00205 Thiamine pyrophosphate enzyme, central domain NMQ03_05335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_05345 PF00155 Aminotransferase class I and II NMQ03_05350 PF00324 Amino acid permease NMQ03_05365 PF13545 Crp-like helix-turn-helix domain NMQ03_05365 PF00027 Cyclic nucleotide-binding domain NMQ03_05375 PF00795 Carbon-nitrogen hydrolase NMQ03_05380 PF00324 Amino acid permease NMQ03_05385 PF00795 Carbon-nitrogen hydrolase NMQ03_05435 PF00145 C-5 cytosine-specific DNA methylase NMQ03_05470 PF01590 GAF domain NMQ03_05470 PF02954 Bacterial regulatory protein, Fis family NMQ03_05470 PF00158 Sigma-54 interaction domain NMQ03_05485 PF00356 Bacterial regulatory proteins, lacI family NMQ03_05500 PF00005 ABC transporter NMQ03_05505 PF02653 Branched-chain amino acid transport system / permease component NMQ03_05510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_05510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_05520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_05520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_05530 PF08241 Methyltransferase domain NMQ03_05535 PF01323 DSBA-like thioredoxin domain NMQ03_05545 PF01425 Amidase NMQ03_05570 PF08220 DeoR-like helix-turn-helix domain NMQ03_05570 PF00455 DeoR C terminal sensor domain NMQ03_05575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NMQ03_05580 PF17042 Nucleotide-binding C-terminal domain NMQ03_05580 PF07005 Sugar-binding N-terminal domain NMQ03_05585 PF03812 2-keto-3-deoxygluconate permease NMQ03_05595 PF00561 alpha/beta hydrolase fold NMQ03_05600 PF07690 Major Facilitator Superfamily NMQ03_05605 PF00082 Subtilase family NMQ03_05615 PF00082 Subtilase family NMQ03_05630 PF00106 short chain dehydrogenase NMQ03_05635 PF00082 Subtilase family NMQ03_05635 PF05922 Peptidase inhibitor I9 NMQ03_05645 PF00743 Flavin-binding monooxygenase-like NMQ03_05650 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_05650 PF00107 Zinc-binding dehydrogenase NMQ03_05670 PF00689 Cation transporting ATPase, C-terminus NMQ03_05670 PF00690 Cation transporter/ATPase, N-terminus NMQ03_05680 PF13185 GAF domain NMQ03_05680 PF13492 GAF domain NMQ03_05680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_05680 PF07730 Histidine kinase NMQ03_05685 PF00196 Bacterial regulatory proteins, luxR family NMQ03_05685 PF00072 Response regulator receiver domain NMQ03_05705 PF03595 Voltage-dependent anion channel NMQ03_05745 PF00313 'Cold-shock' DNA-binding domain NMQ03_05765 PF02447 GntP family permease NMQ03_05770 PF00106 short chain dehydrogenase NMQ03_05780 PF04185 Phosphoesterase family NMQ03_05790 PF00155 Aminotransferase class I and II NMQ03_05790 PF00392 Bacterial regulatory proteins, gntR family NMQ03_05805 PF05958 tRNA (Uracil-5-)-methyltransferase NMQ03_05810 PF00324 Amino acid permease NMQ03_05820 PF01614 Bacterial transcriptional regulator NMQ03_05820 PF09339 IclR helix-turn-helix domain NMQ03_05825 PF02574 Homocysteine S-methyltransferase NMQ03_05835 PF01872 RibD C-terminal domain NMQ03_05845 PF13188 PAS domain NMQ03_05845 PF00563 EAL domain NMQ03_05845 PF03707 Bacterial signalling protein N terminal repeat NMQ03_05845 PF00990 Diguanylate cyclase, GGDEF domain NMQ03_05850 PF04226 Transglycosylase associated protein NMQ03_05860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NMQ03_05860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NMQ03_05860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NMQ03_05865 PF13439 Glycosyltransferase Family 4 NMQ03_05865 PF00534 Glycosyl transferases group 1 NMQ03_05870 PF09557 Domain of unknown function (DUF2382) NMQ03_05870 PF05239 PRC-barrel domain NMQ03_05885 PF00551 Formyl transferase NMQ03_05890 PF07690 Major Facilitator Superfamily NMQ03_05895 PF01808 AICARFT/IMPCHase bienzyme NMQ03_05895 PF02142 MGS-like domain NMQ03_05910 PF03971 Monomeric isocitrate dehydrogenase NMQ03_05920 PF03793 PASTA domain NMQ03_05920 PF00069 Protein kinase domain NMQ03_05935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_05940 PF00005 ABC transporter NMQ03_05940 PF12704 MacB-like periplasmic core domain NMQ03_05940 PF02687 FtsX-like permease family NMQ03_05950 PF00544 Pectate lyase NMQ03_05955 PF13407 Periplasmic binding protein domain NMQ03_05960 PF02653 Branched-chain amino acid transport system / permease component NMQ03_05965 PF00005 ABC transporter NMQ03_05985 PF13520 Amino acid permease NMQ03_05990 PF01593 Flavin containing amine oxidoreductase NMQ03_05990 PF02027 RolB/RolC glucosidase family NMQ03_06000 PF00551 Formyl transferase NMQ03_06005 PF00464 Serine hydroxymethyltransferase NMQ03_06010 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NMQ03_06010 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NMQ03_06015 PF07730 Histidine kinase NMQ03_06020 PF00196 Bacterial regulatory proteins, luxR family NMQ03_06020 PF00072 Response regulator receiver domain NMQ03_06035 PF03372 Endonuclease/Exonuclease/phosphatase family NMQ03_06040 PF00579 tRNA synthetases class I (W and Y) NMQ03_06060 PF13085 2Fe-2S iron-sulfur cluster binding domain NMQ03_06065 PF00890 FAD binding domain NMQ03_06065 PF02910 Fumarate reductase flavoprotein C-term NMQ03_06075 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NMQ03_06080 PF01050 Mannose-6-phosphate isomerase NMQ03_06080 PF00483 Nucleotidyl transferase NMQ03_06085 PF04107 Glutamate-cysteine ligase family 2(GCS2) NMQ03_06085 PF01546 Peptidase family M20/M25/M40 NMQ03_06090 PF01047 MarR family NMQ03_06095 PF02566 OsmC-like protein NMQ03_06100 PF00107 Zinc-binding dehydrogenase NMQ03_06100 PF16884 N-terminal domain of oxidoreductase NMQ03_06105 PF02608 ABC transporter substrate-binding protein PnrA-like NMQ03_06110 PF00005 ABC transporter NMQ03_06120 PF02653 Branched-chain amino acid transport system / permease component NMQ03_06125 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMQ03_06130 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NMQ03_06130 PF02885 Glycosyl transferase family, helical bundle domain NMQ03_06130 PF00591 Glycosyl transferase family, a/b domain NMQ03_06135 PF09335 SNARE associated Golgi protein NMQ03_06140 PF09335 SNARE associated Golgi protein NMQ03_06145 PF00962 Adenosine/AMP deaminase NMQ03_06150 PF03819 MazG nucleotide pyrophosphohydrolase domain NMQ03_06155 PF03952 Enolase, N-terminal domain NMQ03_06155 PF00113 Enolase, C-terminal TIM barrel domain NMQ03_06170 PF02541 Ppx/GppA phosphatase family NMQ03_06175 PF00082 Subtilase family NMQ03_06175 PF05922 Peptidase inhibitor I9 NMQ03_06180 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_06190 PF13458 Periplasmic binding protein NMQ03_06195 PF02653 Branched-chain amino acid transport system / permease component NMQ03_06200 PF02653 Branched-chain amino acid transport system / permease component NMQ03_06200 PF11862 Domain of unknown function (DUF3382) NMQ03_06205 PF12399 Branched-chain amino acid ATP-binding cassette transporter NMQ03_06205 PF00005 ABC transporter NMQ03_06210 PF00005 ABC transporter NMQ03_06220 PF10509 Galactokinase galactose-binding signature NMQ03_06220 PF08544 GHMP kinases C terminal NMQ03_06220 PF00288 GHMP kinases N terminal domain NMQ03_06225 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NMQ03_06225 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NMQ03_06235 PF01594 AI-2E family transporter NMQ03_06245 PF01694 Rhomboid family NMQ03_06250 PF01272 Transcription elongation factor, GreA/GreB, C-term NMQ03_06250 PF03449 Transcription elongation factor, N-terminal NMQ03_06260 PF02585 GlcNAc-PI de-N-acetylase NMQ03_06270 PF03006 Haemolysin-III related NMQ03_06275 PF01255 Putative undecaprenyl diphosphate synthase NMQ03_06280 PF02562 PhoH-like protein NMQ03_06280 PF13638 PIN domain NMQ03_06285 PF13302 Acetyltransferase (GNAT) domain NMQ03_06305 PF07690 Major Facilitator Superfamily NMQ03_06310 PF00440 Bacterial regulatory proteins, tetR family NMQ03_06315 PF10415 Fumarase C C-terminus NMQ03_06315 PF00206 Lyase NMQ03_06320 PF00484 Carbonic anhydrase NMQ03_06330 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NMQ03_06340 PF01238 Phosphomannose isomerase type I NMQ03_06345 PF03816 Cell envelope-related transcriptional attenuator domain NMQ03_06355 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NMQ03_06355 PF02222 ATP-grasp domain NMQ03_06370 PF02467 Transcription factor WhiB NMQ03_06375 PF00535 Glycosyl transferase family 2 NMQ03_06375 PF00534 Glycosyl transferases group 1 NMQ03_06400 PF05221 S-adenosyl-L-homocysteine hydrolase NMQ03_06400 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NMQ03_06405 PF03734 L,D-transpeptidase catalytic domain NMQ03_06405 PF17964 Bacterial Ig domain NMQ03_06425 PF00501 AMP-binding enzyme NMQ03_06430 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NMQ03_06430 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase NMQ03_06435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMQ03_06440 PF00171 Aldehyde dehydrogenase family NMQ03_06445 PF11992 Domain of unknown function (DUF3488) NMQ03_06445 PF13559 Domain of unknown function (DUF4129) NMQ03_06445 PF01841 Transglutaminase-like superfamily NMQ03_06455 PF07726 ATPase family associated with various cellular activities (AAA) NMQ03_06455 PF17863 AAA lid domain NMQ03_06460 PF01026 TatD related DNase NMQ03_06465 PF06737 Transglycosylase-like domain NMQ03_06465 PF07501 G5 domain NMQ03_06465 PF03990 G5-linked-Ubiquitin-like domain NMQ03_06470 PF00398 Ribosomal RNA adenine dimethylase NMQ03_06475 PF08544 GHMP kinases C terminal NMQ03_06475 PF00288 GHMP kinases N terminal domain NMQ03_06480 PF12848 ABC transporter NMQ03_06480 PF16326 ABC transporter C-terminal domain NMQ03_06480 PF00005 ABC transporter NMQ03_06485 PF00440 Bacterial regulatory proteins, tetR family NMQ03_06495 PF00132 Bacterial transferase hexapeptide (six repeats) NMQ03_06495 PF12804 MobA-like NTP transferase domain NMQ03_06500 PF14572 Phosphoribosyl synthetase-associated domain NMQ03_06500 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NMQ03_06505 PF01386 Ribosomal L25p family NMQ03_06505 PF14693 Ribosomal protein TL5, C-terminal domain NMQ03_06510 PF01195 Peptidyl-tRNA hydrolase NMQ03_06520 PF00196 Bacterial regulatory proteins, luxR family NMQ03_06520 PF00072 Response regulator receiver domain NMQ03_06525 PF00266 Aminotransferase class-V NMQ03_06530 PF01592 NifU-like N terminal domain NMQ03_06545 PF13460 NAD(P)H-binding NMQ03_06545 PF11066 Protein of unknown function (DUF2867) NMQ03_06550 PF00271 Helicase conserved C-terminal domain NMQ03_06550 PF02559 CarD-like/TRCF domain NMQ03_06550 PF00270 DEAD/DEAH box helicase NMQ03_06550 PF17757 UvrB interaction domain NMQ03_06550 PF03461 TRCF domain NMQ03_06565 PF01791 DeoC/LacD family aldolase NMQ03_06570 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_06570 PF18113 Rubredoxin binding C-terminal domain NMQ03_06580 PF02602 Uroporphyrinogen-III synthase HemD NMQ03_06580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMQ03_06585 PF04324 BFD-like [2Fe-2S] binding domain NMQ03_06585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NMQ03_06585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NMQ03_06585 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_06585 PF18267 Rubredoxin NAD+ reductase C-terminal domain NMQ03_06595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMQ03_06595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMQ03_06595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMQ03_06595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMQ03_06600 PF01048 Phosphorylase superfamily NMQ03_06605 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_06605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMQ03_06610 PF01790 Prolipoprotein diacylglyceryl transferase NMQ03_06640 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_06640 PF14759 Reductase C-terminal NMQ03_06645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NMQ03_06645 PF00384 Molybdopterin oxidoreductase NMQ03_06645 PF01568 Molydopterin dinucleotide binding domain NMQ03_06650 PF07690 Major Facilitator Superfamily NMQ03_06655 PF00083 Sugar (and other) transporter NMQ03_06655 PF07690 Major Facilitator Superfamily NMQ03_06675 PF02545 Maf-like protein NMQ03_06680 PF03176 MMPL family NMQ03_06685 PF00440 Bacterial regulatory proteins, tetR family NMQ03_06685 PF17754 MftR C-terminal domain NMQ03_06695 PF00375 Sodium:dicarboxylate symporter family NMQ03_06700 PF01569 PAP2 superfamily NMQ03_06715 PF01039 Carboxyl transferase domain NMQ03_06725 PF08279 HTH domain NMQ03_06725 PF03099 Biotin/lipoate A/B protein ligase family NMQ03_06725 PF02237 Biotin protein ligase C terminal domain NMQ03_06735 PF00211 Adenylate and Guanylate cyclase catalytic domain NMQ03_06735 PF16701 Adenylate cyclase regulatory domain NMQ03_06750 PF17863 AAA lid domain NMQ03_06750 PF07726 ATPase family associated with various cellular activities (AAA) NMQ03_06800 PF01580 FtsK/SpoIIIE family NMQ03_06800 PF12538 DNA transporter NMQ03_06815 PF00459 Inositol monophosphatase family NMQ03_06825 PF01042 Endoribonuclease L-PSP NMQ03_06830 PF00072 Response regulator receiver domain NMQ03_06840 PF03600 Citrate transporter NMQ03_06845 PF02686 Glu-tRNAGln amidotransferase C subunit NMQ03_06850 PF01425 Amidase NMQ03_06855 PF02934 GatB/GatE catalytic domain NMQ03_06855 PF02637 GatB domain NMQ03_06870 PF00107 Zinc-binding dehydrogenase NMQ03_06870 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_06875 PF00155 Aminotransferase class I and II NMQ03_06885 PF01979 Amidohydrolase family NMQ03_06910 PF01053 Cys/Met metabolism PLP-dependent enzyme NMQ03_06915 PF00561 alpha/beta hydrolase fold NMQ03_06920 PF00083 Sugar (and other) transporter NMQ03_06925 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_06925 PF00107 Zinc-binding dehydrogenase NMQ03_06935 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMQ03_06935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMQ03_06940 PF00171 Aldehyde dehydrogenase family NMQ03_06955 PF01738 Dienelactone hydrolase family NMQ03_06970 PF03129 Anticodon binding domain NMQ03_06970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMQ03_06980 PF01553 Acyltransferase NMQ03_06985 PF12146 Serine aminopeptidase, S33 NMQ03_06995 PF00175 Oxidoreductase NAD-binding domain NMQ03_06995 PF00970 Oxidoreductase FAD-binding domain NMQ03_06995 PF00042 Globin NMQ03_07000 PF01207 Dihydrouridine synthase (Dus) NMQ03_07005 PF13286 Phosphohydrolase-associated domain NMQ03_07005 PF01966 HD domain NMQ03_07015 PF02424 ApbE family NMQ03_07025 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NMQ03_07025 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NMQ03_07025 PF10531 SLBB domain NMQ03_07035 PF08275 DNA primase catalytic core, N-terminal domain NMQ03_07035 PF01807 CHC2 zinc finger NMQ03_07035 PF13662 Toprim domain NMQ03_07035 PF08278 DNA primase DnaG DnaB-binding NMQ03_07035 PF10410 DnaB-helicase binding domain of primase NMQ03_07060 PF07690 Major Facilitator Superfamily NMQ03_07070 PF01066 CDP-alcohol phosphatidyltransferase NMQ03_07080 PF00534 Glycosyl transferases group 1 NMQ03_07090 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_07090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_07090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_07095 PF01551 Peptidase family M23 NMQ03_07100 PF00318 Ribosomal protein S2 NMQ03_07105 PF00889 Elongation factor TS NMQ03_07110 PF00696 Amino acid kinase family NMQ03_07115 PF01765 Ribosome recycling factor NMQ03_07135 PF00474 Sodium:solute symporter family NMQ03_07145 PF04397 LytTr DNA-binding domain NMQ03_07145 PF00072 Response regulator receiver domain NMQ03_07150 PF07694 5TMR of 5TMR-LYT NMQ03_07150 PF06580 Histidine kinase NMQ03_07160 PF00474 Sodium:solute symporter family NMQ03_07180 PF01037 Lrp/AsnC ligand binding domain NMQ03_07185 PF00676 Dehydrogenase E1 component NMQ03_07190 PF02780 Transketolase, C-terminal domain NMQ03_07190 PF02779 Transketolase, pyrimidine binding domain NMQ03_07195 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMQ03_07195 PF00364 Biotin-requiring enzyme NMQ03_07195 PF02817 e3 binding domain NMQ03_07205 PF01039 Carboxyl transferase domain NMQ03_07210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMQ03_07210 PF00364 Biotin-requiring enzyme NMQ03_07210 PF00289 Biotin carboxylase, N-terminal domain NMQ03_07210 PF02785 Biotin carboxylase C-terminal domain NMQ03_07215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_07215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_07215 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_07220 PF01144 Coenzyme A transferase NMQ03_07225 PF01144 Coenzyme A transferase NMQ03_07235 PF03328 HpcH/HpaI aldolase/citrate lyase family NMQ03_07250 PF17820 PDZ domain NMQ03_07250 PF02163 Peptidase family M50 NMQ03_07270 PF04551 GcpE protein NMQ03_07285 PF04073 Aminoacyl-tRNA editing domain NMQ03_07285 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMQ03_07285 PF03129 Anticodon binding domain NMQ03_07290 PF01925 Sulfite exporter TauE/SafE NMQ03_07300 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase NMQ03_07315 PF17384 RimP C-terminal SH3 domain NMQ03_07315 PF02576 RimP N-terminal domain NMQ03_07320 PF08529 NusA N-terminal domain NMQ03_07320 PF13184 NusA-like KH domain NMQ03_07330 PF11987 Translation-initiation factor 2 NMQ03_07330 PF00009 Elongation factor Tu GTP binding domain NMQ03_07330 PF04760 Translation initiation factor IF-2, N-terminal region NMQ03_07335 PF02033 Ribosome-binding factor A NMQ03_07345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMQ03_07350 PF00085 Thioredoxin NMQ03_07355 PF00155 Aminotransferase class I and II NMQ03_07360 PF01509 TruB family pseudouridylate synthase (N terminal domain) NMQ03_07360 PF16198 tRNA pseudouridylate synthase B C-terminal domain NMQ03_07360 PF09142 tRNA Pseudouridine synthase II, C terminal NMQ03_07375 PF01687 Riboflavin kinase NMQ03_07375 PF06574 FAD synthetase NMQ03_07380 PF03301 Tryptophan 2,3-dioxygenase NMQ03_07390 PF00312 Ribosomal protein S15 NMQ03_07395 PF00013 KH domain NMQ03_07395 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NMQ03_07395 PF01138 3' exoribonuclease family, domain 1 NMQ03_07395 PF00575 S1 RNA binding domain NMQ03_07400 PF00675 Insulinase (Peptidase family M16) NMQ03_07400 PF05193 Peptidase M16 inactive domain NMQ03_07420 PF04055 Radical SAM superfamily NMQ03_07420 PF06463 Molybdenum Cofactor Synthesis C NMQ03_07435 PF01967 MoaC family NMQ03_07440 PF00994 Probable molybdopterin binding domain NMQ03_07445 PF02391 MoaE protein NMQ03_07450 PF01113 Dihydrodipicolinate reductase, N-terminus NMQ03_07450 PF05173 Dihydrodipicolinate reductase, C-terminus NMQ03_07475 PF00701 Dihydrodipicolinate synthetase family NMQ03_07480 PF17770 Ribonuclease J C-terminal domain NMQ03_07480 PF12706 Beta-lactamase superfamily domain NMQ03_07480 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NMQ03_07485 PF17854 FtsK alpha domain NMQ03_07485 PF09397 Ftsk gamma domain NMQ03_07485 PF01580 FtsK/SpoIIIE family NMQ03_07490 PF01066 CDP-alcohol phosphatidyltransferase NMQ03_07515 PF00154 recA bacterial DNA recombination protein NMQ03_07525 PF04055 Radical SAM superfamily NMQ03_07525 PF00919 Uncharacterized protein family UPF0004 NMQ03_07535 PF01678 Diaminopimelate epimerase NMQ03_07540 PF05175 Methyltransferase small domain NMQ03_07545 PF16360 GTP-binding GTPase Middle Region NMQ03_07545 PF13167 GTP-binding GTPase N-terminal NMQ03_07545 PF01926 50S ribosome-binding GTPase NMQ03_07550 PF13307 Helicase C-terminal domain NMQ03_07555 PF01726 LexA DNA binding domain NMQ03_07555 PF00717 Peptidase S24-like NMQ03_07565 PF00155 Aminotransferase class I and II NMQ03_07570 PF00475 Imidazoleglycerol-phosphate dehydratase NMQ03_07575 PF00117 Glutamine amidotransferase class-I NMQ03_07585 PF00977 Histidine biosynthesis protein NMQ03_07605 PF00707 Translation initiation factor IF-3, C-terminal domain NMQ03_07605 PF05198 Translation initiation factor IF-3, N-terminal domain NMQ03_07610 PF01632 Ribosomal protein L35 NMQ03_07615 PF00453 Ribosomal protein L20 NMQ03_07620 PF00588 SpoU rRNA Methylase family NMQ03_07625 PF04226 Transglycosylase associated protein NMQ03_07630 PF07690 Major Facilitator Superfamily NMQ03_07635 PF00293 NUDIX domain NMQ03_07640 PF04055 Radical SAM superfamily NMQ03_07655 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NMQ03_07655 PF01409 tRNA synthetases class II core domain (F) NMQ03_07660 PF03147 Ferredoxin-fold anticodon binding domain NMQ03_07660 PF03484 tRNA synthetase B5 domain NMQ03_07660 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NMQ03_07660 PF03483 B3/4 domain NMQ03_07660 PF01588 Putative tRNA binding domain NMQ03_07665 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_07665 PF00107 Zinc-binding dehydrogenase NMQ03_07670 PF02774 Semialdehyde dehydrogenase, dimerisation domain NMQ03_07670 PF01118 Semialdehyde dehydrogenase, NAD binding domain NMQ03_07675 PF01960 ArgJ family NMQ03_07680 PF00696 Amino acid kinase family NMQ03_07685 PF00202 Aminotransferase class-III NMQ03_07690 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NMQ03_07690 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NMQ03_07695 PF01316 Arginine repressor, DNA binding domain NMQ03_07695 PF02863 Arginine repressor, C-terminal domain NMQ03_07700 PF00764 Arginosuccinate synthase NMQ03_07705 PF14698 Argininosuccinate lyase C-terminal NMQ03_07705 PF00206 Lyase NMQ03_07710 PF01243 Pyridoxamine 5'-phosphate oxidase NMQ03_07710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NMQ03_07720 PF02805 Metal binding domain of Ada NMQ03_07720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NMQ03_07720 PF12833 Helix-turn-helix domain NMQ03_07720 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NMQ03_07725 PF02805 Metal binding domain of Ada NMQ03_07725 PF06029 AlkA N-terminal domain NMQ03_07725 PF00730 HhH-GPD superfamily base excision DNA repair protein NMQ03_07725 PF12833 Helix-turn-helix domain NMQ03_07740 PF00579 tRNA synthetases class I (W and Y) NMQ03_07765 PF18407 GCN5-related N-acetyltransferase like domain NMQ03_07765 PF13344 Haloacid dehalogenase-like hydrolase NMQ03_07770 PF01479 S4 domain NMQ03_07770 PF01728 FtsJ-like methyltransferase NMQ03_07775 PF01513 ATP-NAD kinase NMQ03_07780 PF02463 RecF/RecN/SMC N terminal domain NMQ03_07785 PF00117 Glutamine amidotransferase class-I NMQ03_07785 PF06418 CTP synthase N-terminus NMQ03_07790 PF00293 NUDIX domain NMQ03_07795 PF02899 Phage integrase, N-terminal SAM-like domain NMQ03_07795 PF00589 Phage integrase family NMQ03_07800 PF04542 Sigma-70 region 2 NMQ03_07800 PF04539 Sigma-70 region 3 NMQ03_07800 PF04545 Sigma-70, region 4 NMQ03_07815 PF00285 Citrate synthase, C-terminal domain NMQ03_07825 PF03972 MmgE/PrpD family NMQ03_07830 PF07729 FCD domain NMQ03_07830 PF00392 Bacterial regulatory proteins, gntR family NMQ03_07835 PF13193 AMP-binding enzyme C-terminal domain NMQ03_07835 PF00501 AMP-binding enzyme NMQ03_07835 PF16177 Acetyl-coenzyme A synthetase N-terminus NMQ03_07840 PF04703 FaeA-like protein NMQ03_07840 PF00072 Response regulator receiver domain NMQ03_07845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_07845 PF00989 PAS fold NMQ03_07845 PF17203 Single cache domain 3 NMQ03_07845 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NMQ03_07850 PF00375 Sodium:dicarboxylate symporter family NMQ03_07855 PF13614 AAA domain NMQ03_07860 PF02616 Segregation and condensation protein ScpA NMQ03_07865 PF04079 Segregation and condensation complex subunit ScpB NMQ03_07870 PF00849 RNA pseudouridylate synthase NMQ03_07870 PF01479 S4 domain NMQ03_07875 PF02153 Prephenate dehydrogenase NMQ03_07880 PF02224 Cytidylate kinase NMQ03_07890 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NMQ03_07890 PF01926 50S ribosome-binding GTPase NMQ03_07900 PF00589 Phage integrase family NMQ03_07900 PF02899 Phage integrase, N-terminal SAM-like domain NMQ03_07910 PF12728 Helix-turn-helix domain NMQ03_07920 PF12307 Protein of unknown function (DUF3631) NMQ03_07955 PF18273 Type III R-M EcoP15I C-terminal domain NMQ03_07955 PF01555 DNA methylase NMQ03_07960 PF04851 Type III restriction enzyme, res subunit NMQ03_07960 PF08774 VRR-NUC domain NMQ03_07965 PF01522 Polysaccharide deacetylase NMQ03_07975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NMQ03_07975 PF06827 Zinc finger found in FPG and IleRS NMQ03_07980 PF01597 Glycine cleavage H-protein NMQ03_07985 PF00498 FHA domain NMQ03_07990 PF00376 MerR family regulatory protein NMQ03_07995 PF02577 Bifunctional nuclease NMQ03_08000 PF13411 MerR HTH family regulatory protein NMQ03_08005 PF13614 AAA domain NMQ03_08010 PF02436 Conserved carboxylase domain NMQ03_08010 PF00682 HMGL-like NMQ03_08010 PF00364 Biotin-requiring enzyme NMQ03_08010 PF00289 Biotin carboxylase, N-terminal domain NMQ03_08010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMQ03_08010 PF02785 Biotin carboxylase C-terminal domain NMQ03_08015 PF00004 ATPase family associated with various cellular activities (AAA) NMQ03_08015 PF17866 AAA lid domain NMQ03_08020 PF00501 AMP-binding enzyme NMQ03_08035 PF12146 Serine aminopeptidase, S33 NMQ03_08050 PF01474 Class-II DAHP synthetase family NMQ03_08060 PF05257 CHAP domain NMQ03_08060 PF01476 LysM domain NMQ03_08080 PF00817 impB/mucB/samB family NMQ03_08080 PF11799 impB/mucB/samB family C-terminal domain NMQ03_08090 PF02381 MraZ protein, putative antitoxin-like NMQ03_08095 PF01795 MraW methylase family NMQ03_08105 PF03717 Penicillin-binding Protein dimerisation domain NMQ03_08105 PF00905 Penicillin binding protein transpeptidase domain NMQ03_08110 PF01225 Mur ligase family, catalytic domain NMQ03_08110 PF02875 Mur ligase family, glutamate ligase domain NMQ03_08110 PF08245 Mur ligase middle domain NMQ03_08115 PF01225 Mur ligase family, catalytic domain NMQ03_08115 PF02875 Mur ligase family, glutamate ligase domain NMQ03_08115 PF08245 Mur ligase middle domain NMQ03_08120 PF00953 Glycosyl transferase family 4 NMQ03_08125 PF02875 Mur ligase family, glutamate ligase domain NMQ03_08125 PF08245 Mur ligase middle domain NMQ03_08130 PF01098 Cell cycle protein NMQ03_08135 PF04101 Glycosyltransferase family 28 C-terminal domain NMQ03_08135 PF03033 Glycosyltransferase family 28 N-terminal domain NMQ03_08145 PF03799 Cell division protein FtsQ NMQ03_08145 PF08478 POTRA domain, FtsQ-type NMQ03_08150 PF12327 FtsZ family, C-terminal domain NMQ03_08150 PF00091 Tubulin/FtsZ family, GTPase domain NMQ03_08155 PF02578 Multi-copper polyphenol oxidoreductase laccase NMQ03_08160 PF01168 Alanine racemase, N-terminal domain NMQ03_08165 PF04472 Cell division protein SepF NMQ03_08175 PF05103 DivIVA protein NMQ03_08185 PF00849 RNA pseudouridylate synthase NMQ03_08190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NMQ03_08190 PF07733 Bacterial DNA polymerase III alpha NTPase domain NMQ03_08190 PF14579 Helix-hairpin-helix motif NMQ03_08190 PF02811 PHP domain NMQ03_08205 PF00815 Histidinol dehydrogenase NMQ03_08210 PF03477 ATP cone domain NMQ03_08215 PF00480 ROK family NMQ03_08220 PF00557 Metallopeptidase family M24 NMQ03_08230 PF02548 Ketopantoate hydroxymethyltransferase NMQ03_08235 PF03951 Glutamine synthetase, beta-Grasp domain NMQ03_08235 PF00120 Glutamine synthetase, catalytic domain NMQ03_08240 PF08335 GlnD PII-uridylyltransferase NMQ03_08240 PF03710 Glutamate-ammonia ligase adenylyltransferase NMQ03_08280 PF03099 Biotin/lipoate A/B protein ligase family NMQ03_08285 PF03793 PASTA domain NMQ03_08285 PF00069 Protein kinase domain NMQ03_08290 PF01370 NAD dependent epimerase/dehydratase family NMQ03_08290 PF08338 Domain of unknown function (DUF1731) NMQ03_08295 PF03572 Peptidase family S41 NMQ03_08295 PF14684 Tricorn protease C1 domain NMQ03_08295 PF14685 Tricorn protease PDZ domain NMQ03_08295 PF07676 WD40-like Beta Propeller Repeat NMQ03_08300 PF02566 OsmC-like protein NMQ03_08310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMQ03_08310 PF00364 Biotin-requiring enzyme NMQ03_08310 PF02817 e3 binding domain NMQ03_08315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMQ03_08315 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_08320 PF00883 Cytosol aminopeptidase family, catalytic domain NMQ03_08320 PF02789 Cytosol aminopeptidase family, N-terminal domain NMQ03_08340 PF04542 Sigma-70 region 2 NMQ03_08340 PF04539 Sigma-70 region 3 NMQ03_08340 PF04545 Sigma-70, region 4 NMQ03_08340 PF00140 Sigma-70 factor, region 1.2 NMQ03_08350 PF00204 DNA gyrase B NMQ03_08350 PF00986 DNA gyrase B subunit, carboxyl terminus NMQ03_08350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_08350 PF01751 Toprim domain NMQ03_08360 PF03965 Penicillinase repressor NMQ03_08365 PF01654 Cytochrome bd terminal oxidase subunit I NMQ03_08370 PF02322 Cytochrome bd terminal oxidase subunit II NMQ03_08385 PF13732 Domain of unknown function (DUF4162) NMQ03_08385 PF00005 ABC transporter NMQ03_08390 PF12679 ABC-2 family transporter protein NMQ03_08395 PF03989 DNA gyrase C-terminal domain, beta-propeller NMQ03_08395 PF00521 DNA gyrase/topoisomerase IV, subunit A NMQ03_08400 PF00027 Cyclic nucleotide-binding domain NMQ03_08400 PF13302 Acetyltransferase (GNAT) domain NMQ03_08415 PF00265 Thymidine kinase NMQ03_08430 PF11268 Protein of unknown function (DUF3071) NMQ03_08440 PF00692 dUTPase NMQ03_08460 PF02254 TrkA-N domain NMQ03_08460 PF02080 TrkA-C domain NMQ03_08465 PF02254 TrkA-N domain NMQ03_08465 PF02080 TrkA-C domain NMQ03_08470 PF13520 Amino acid permease NMQ03_08480 PF00694 Aconitase C-terminal domain NMQ03_08480 PF00330 Aconitase family (aconitate hydratase) NMQ03_08485 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NMQ03_08485 PF02780 Transketolase, C-terminal domain NMQ03_08485 PF02779 Transketolase, pyrimidine binding domain NMQ03_08500 PF00248 Aldo/keto reductase family NMQ03_08505 PF01156 Inosine-uridine preferring nucleoside hydrolase NMQ03_08525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMQ03_08525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMQ03_08525 PF00378 Enoyl-CoA hydratase/isomerase NMQ03_08530 PF02803 Thiolase, C-terminal domain NMQ03_08530 PF00108 Thiolase, N-terminal domain NMQ03_08535 PF00570 HRDC domain NMQ03_08535 PF01612 3'-5' exonuclease NMQ03_08545 PF01212 Beta-eliminating lyase NMQ03_08560 PF01641 SelR domain NMQ03_08580 PF00106 short chain dehydrogenase NMQ03_08585 PF07732 Multicopper oxidase NMQ03_08585 PF00394 Multicopper oxidase NMQ03_08585 PF07731 Multicopper oxidase NMQ03_08590 PF04073 Aminoacyl-tRNA editing domain NMQ03_08595 PF02657 Fe-S metabolism associated domain NMQ03_08600 PF00581 Rhodanese-like domain NMQ03_08655 PF01327 Polypeptide deformylase NMQ03_08660 PF02911 Formyl transferase, C-terminal domain NMQ03_08660 PF00551 Formyl transferase NMQ03_08665 PF01029 NusB family NMQ03_08665 PF01189 16S rRNA methyltransferase RsmB/F NMQ03_08670 PF00834 Ribulose-phosphate 3 epimerase family NMQ03_08675 PF01872 RibD C-terminal domain NMQ03_08675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMQ03_08680 PF00677 Lumazine binding domain NMQ03_08685 PF00925 GTP cyclohydrolase II NMQ03_08685 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NMQ03_08690 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NMQ03_08690 PF00925 GTP cyclohydrolase II NMQ03_08695 PF00885 6,7-dimethyl-8-ribityllumazine synthase NMQ03_08700 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NMQ03_08710 PF00977 Histidine biosynthesis protein NMQ03_08720 PF01502 Phosphoribosyl-AMP cyclohydrolase NMQ03_08725 PF04715 Anthranilate synthase component I, N terminal region NMQ03_08725 PF00425 chorismate binding enzyme NMQ03_08740 PF00218 Indole-3-glycerol phosphate synthase NMQ03_08745 PF00291 Pyridoxal-phosphate dependent enzyme NMQ03_08750 PF00290 Tryptophan synthase alpha chain NMQ03_08755 PF01790 Prolipoprotein diacylglyceryl transferase NMQ03_08760 PF01493 GXGXG motif NMQ03_08760 PF01645 Conserved region in glutamate synthase NMQ03_08760 PF04898 Glutamate synthase central domain NMQ03_08760 PF00310 Glutamine amidotransferases class-II NMQ03_08765 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_08765 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NMQ03_08770 PF00224 Pyruvate kinase, barrel domain NMQ03_08770 PF02887 Pyruvate kinase, alpha/beta domain NMQ03_08775 PF03861 ANTAR domain NMQ03_08775 PF00072 Response regulator receiver domain NMQ03_08785 PF02899 Phage integrase, N-terminal SAM-like domain NMQ03_08785 PF00589 Phage integrase family NMQ03_08880 PF11398 Protein of unknown function (DUF2813) NMQ03_08935 PF00436 Single-strand binding protein family NMQ03_08945 PF03389 MobA/MobL family NMQ03_08945 PF17841 BID domain of Bartonella effector protein (Bep) NMQ03_08945 PF01443 Viral (Superfamily 1) RNA helicase NMQ03_08970 PF01144 Coenzyme A transferase NMQ03_08975 PF01144 Coenzyme A transferase NMQ03_08980 PF02803 Thiolase, C-terminal domain NMQ03_08980 PF00108 Thiolase, N-terminal domain NMQ03_08985 PF00106 short chain dehydrogenase NMQ03_08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_08990 PF03466 LysR substrate binding domain NMQ03_08995 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_08995 PF00107 Zinc-binding dehydrogenase NMQ03_09000 PF07690 Major Facilitator Superfamily NMQ03_09005 PF13378 Enolase C-terminal domain-like NMQ03_09005 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_09030 PF00561 alpha/beta hydrolase fold NMQ03_09040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMQ03_09045 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_09050 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_09050 PF12911 N-terminal TM domain of oligopeptide transport permease C NMQ03_09055 PF00005 ABC transporter NMQ03_09055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMQ03_09060 PF00005 ABC transporter NMQ03_09060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMQ03_09065 PF14310 Fibronectin type III-like domain NMQ03_09065 PF00933 Glycosyl hydrolase family 3 N terminal domain NMQ03_09065 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMQ03_09065 PF07691 PA14 domain NMQ03_09120 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_09125 PF07883 Cupin domain NMQ03_09130 PF00501 AMP-binding enzyme NMQ03_09130 PF13193 AMP-binding enzyme C-terminal domain NMQ03_09140 PF01494 FAD binding domain NMQ03_09150 PF07690 Major Facilitator Superfamily NMQ03_09155 PF00171 Aldehyde dehydrogenase family NMQ03_09160 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_09160 PF00107 Zinc-binding dehydrogenase NMQ03_09165 PF08362 YcdC-like protein, C-terminal region NMQ03_09165 PF00440 Bacterial regulatory proteins, tetR family NMQ03_09170 PF00107 Zinc-binding dehydrogenase NMQ03_09170 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_09190 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_09190 PF00107 Zinc-binding dehydrogenase NMQ03_09195 PF00171 Aldehyde dehydrogenase family NMQ03_09200 PF00743 Flavin-binding monooxygenase-like NMQ03_09205 PF00158 Sigma-54 interaction domain NMQ03_09205 PF00989 PAS fold NMQ03_09205 PF02954 Bacterial regulatory protein, Fis family NMQ03_09210 PF03466 LysR substrate binding domain NMQ03_09210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_09215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMQ03_09215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMQ03_09220 PF00378 Enoyl-CoA hydratase/isomerase NMQ03_09225 PF00108 Thiolase, N-terminal domain NMQ03_09225 PF02803 Thiolase, C-terminal domain NMQ03_09230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_09230 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_09230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_09235 PF02515 CoA-transferase family III NMQ03_09250 PF07690 Major Facilitator Superfamily NMQ03_09255 PF00083 Sugar (and other) transporter NMQ03_09270 PF08362 YcdC-like protein, C-terminal region NMQ03_09270 PF00440 Bacterial regulatory proteins, tetR family NMQ03_09290 PF00561 alpha/beta hydrolase fold NMQ03_09290 PF00364 Biotin-requiring enzyme NMQ03_09295 PF06912 Protein of unknown function (DUF1275) NMQ03_09305 PF08267 Cobalamin-independent synthase, N-terminal domain NMQ03_09305 PF01717 Cobalamin-independent synthase, Catalytic domain NMQ03_09315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_09315 PF03466 LysR substrate binding domain NMQ03_09325 PF00005 ABC transporter NMQ03_09330 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_09335 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NMQ03_09340 PF00296 Luciferase-like monooxygenase NMQ03_09350 PF00296 Luciferase-like monooxygenase NMQ03_09355 PF03180 NLPA lipoprotein NMQ03_09360 PF00005 ABC transporter NMQ03_09360 PF09383 NIL domain NMQ03_09365 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_09370 PF00296 Luciferase-like monooxygenase NMQ03_09375 PF01613 Flavin reductase like domain NMQ03_09390 PF00571 CBS domain NMQ03_09390 PF00291 Pyridoxal-phosphate dependent enzyme NMQ03_09395 PF07690 Major Facilitator Superfamily NMQ03_09400 PF00296 Luciferase-like monooxygenase NMQ03_09410 PF00155 Aminotransferase class I and II NMQ03_09410 PF00392 Bacterial regulatory proteins, gntR family NMQ03_09415 PF00005 ABC transporter NMQ03_09415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMQ03_09420 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_09425 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_09430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMQ03_09435 PF01565 FAD binding domain NMQ03_09435 PF02913 FAD linked oxidases, C-terminal domain NMQ03_09455 PF12256 Insecticide toxin TcdB middle/N-terminal region NMQ03_09455 PF03534 Salmonella virulence plasmid 65kDa B protein NMQ03_09455 PF12255 Insecticide toxin TcdB middle/C-terminal region NMQ03_09470 PF02661 Fic/DOC family NMQ03_09535 PF00480 ROK family NMQ03_09585 PF07729 FCD domain NMQ03_09585 PF00392 Bacterial regulatory proteins, gntR family NMQ03_09590 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain NMQ03_09590 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain NMQ03_09595 PF07005 Sugar-binding N-terminal domain NMQ03_09595 PF17042 Nucleotide-binding C-terminal domain NMQ03_09600 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_09600 PF00107 Zinc-binding dehydrogenase NMQ03_09605 PF03812 2-keto-3-deoxygluconate permease NMQ03_09620 PF07690 Major Facilitator Superfamily NMQ03_09625 PF00135 Carboxylesterase family NMQ03_09640 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_09640 PF00107 Zinc-binding dehydrogenase NMQ03_09650 PF00171 Aldehyde dehydrogenase family NMQ03_09655 PF00202 Aminotransferase class-III NMQ03_09660 PF03928 Haem-degrading NMQ03_09670 PF01266 FAD dependent oxidoreductase NMQ03_09675 PF00440 Bacterial regulatory proteins, tetR family NMQ03_09680 PF13350 Tyrosine phosphatase family NMQ03_09695 PF00795 Carbon-nitrogen hydrolase NMQ03_09705 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_09720 PF00180 Isocitrate/isopropylmalate dehydrogenase NMQ03_09725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMQ03_09725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMQ03_09730 PF00375 Sodium:dicarboxylate symporter family NMQ03_09735 PF13378 Enolase C-terminal domain-like NMQ03_09740 PF00392 Bacterial regulatory proteins, gntR family NMQ03_09740 PF07729 FCD domain NMQ03_09770 PF00440 Bacterial regulatory proteins, tetR family NMQ03_09780 PF00083 Sugar (and other) transporter NMQ03_09795 PF00155 Aminotransferase class I and II NMQ03_09800 PF03737 Aldolase/RraA NMQ03_09810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_09810 PF03466 LysR substrate binding domain NMQ03_09815 PF03746 LamB/YcsF family NMQ03_09820 PF02682 Carboxyltransferase domain, subdomain C and D NMQ03_09825 PF02626 Carboxyltransferase domain, subdomain A and B NMQ03_09830 PF00106 short chain dehydrogenase NMQ03_09835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMQ03_09845 PF00107 Zinc-binding dehydrogenase NMQ03_09845 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_09870 PF12697 Alpha/beta hydrolase family NMQ03_09895 PF00561 alpha/beta hydrolase fold NMQ03_09895 PF00364 Biotin-requiring enzyme NMQ03_09905 PF00743 Flavin-binding monooxygenase-like NMQ03_09910 PF00440 Bacterial regulatory proteins, tetR family NMQ03_09915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMQ03_09915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMQ03_09920 PF00106 short chain dehydrogenase NMQ03_09930 PF02525 Flavodoxin-like fold NMQ03_09945 PF01965 DJ-1/PfpI family NMQ03_09980 PF02632 BioY family NMQ03_09995 PF01329 Pterin 4 alpha carbinolamine dehydratase NMQ03_10015 PF00196 Bacterial regulatory proteins, luxR family NMQ03_10015 PF00072 Response regulator receiver domain NMQ03_10035 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_10035 PF00107 Zinc-binding dehydrogenase NMQ03_10040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_10040 PF03466 LysR substrate binding domain NMQ03_10045 PF00355 Rieske [2Fe-2S] domain NMQ03_10045 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NMQ03_10050 PF00111 2Fe-2S iron-sulfur cluster binding domain NMQ03_10050 PF00970 Oxidoreductase FAD-binding domain NMQ03_10050 PF00175 Oxidoreductase NAD-binding domain NMQ03_10065 PF07690 Major Facilitator Superfamily NMQ03_10070 PF00723 Glycosyl hydrolases family 15 NMQ03_10075 PF13378 Enolase C-terminal domain-like NMQ03_10075 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_10080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_10080 PF00205 Thiamine pyrophosphate enzyme, central domain NMQ03_10080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_10085 PF00732 GMC oxidoreductase NMQ03_10085 PF05199 GMC oxidoreductase NMQ03_10105 PF01263 Aldose 1-epimerase NMQ03_10110 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_10110 PF00107 Zinc-binding dehydrogenase NMQ03_10125 PF13247 4Fe-4S dicluster domain NMQ03_10125 PF09163 Formate dehydrogenase N, transmembrane NMQ03_10135 PF00586 AIR synthase related protein, N-terminal domain NMQ03_10135 PF02769 AIR synthase related protein, C-terminal domain NMQ03_10145 PF12390 Selenocysteine synthase N terminal NMQ03_10145 PF03841 L-seryl-tRNA selenium transferase NMQ03_10165 PF00067 Cytochrome P450 NMQ03_10180 PF01522 Polysaccharide deacetylase NMQ03_10195 PF00248 Aldo/keto reductase family NMQ03_10205 PF01145 SPFH domain / Band 7 family NMQ03_10205 PF15975 Flotillin NMQ03_10210 PF07690 Major Facilitator Superfamily NMQ03_10210 PF00083 Sugar (and other) transporter NMQ03_10215 PF01613 Flavin reductase like domain NMQ03_10220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMQ03_10220 PF00378 Enoyl-CoA hydratase/isomerase NMQ03_10220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMQ03_10230 PF17755 UvrA DNA-binding domain NMQ03_10255 PF00300 Histidine phosphatase superfamily (branch 1) NMQ03_10260 PF17863 AAA lid domain NMQ03_10260 PF01078 Magnesium chelatase, subunit ChlI NMQ03_10280 PF01367 5'-3' exonuclease, C-terminal SAM fold NMQ03_10280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NMQ03_10285 PF01613 Flavin reductase like domain NMQ03_10300 PF00270 DEAD/DEAH box helicase NMQ03_10300 PF04408 Helicase associated domain (HA2) NMQ03_10300 PF00271 Helicase conserved C-terminal domain NMQ03_10300 PF08482 ATP-dependent helicase C-terminal NMQ03_10315 PF01300 Telomere recombination NMQ03_10320 PF00582 Universal stress protein family NMQ03_10320 PF02702 Osmosensitive K+ channel His kinase sensor domain NMQ03_10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_10320 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_10320 PF13493 Domain of unknown function (DUF4118) NMQ03_10325 PF00072 Response regulator receiver domain NMQ03_10325 PF00486 Transcriptional regulatory protein, C terminal NMQ03_10345 PF01384 Phosphate transporter family NMQ03_10360 PF03061 Thioesterase superfamily NMQ03_10365 PF01367 5'-3' exonuclease, C-terminal SAM fold NMQ03_10365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NMQ03_10365 PF00476 DNA polymerase family A NMQ03_10370 PF17668 Acetyltransferase (GNAT) domain NMQ03_10370 PF13530 Sterol carrier protein domain NMQ03_10375 PF00575 S1 RNA binding domain NMQ03_10385 PF09186 Domain of unknown function (DUF1949) NMQ03_10385 PF01205 Uncharacterized protein family UPF0029 NMQ03_10395 PF01121 Dephospho-CoA kinase NMQ03_10395 PF04229 GrpB protein NMQ03_10400 PF17757 UvrB interaction domain NMQ03_10400 PF12344 Ultra-violet resistance protein B NMQ03_10400 PF00271 Helicase conserved C-terminal domain NMQ03_10400 PF02151 UvrB/uvrC motif NMQ03_10400 PF04851 Type III restriction enzyme, res subunit NMQ03_10405 PF03741 Integral membrane protein TerC family NMQ03_10410 PF00561 alpha/beta hydrolase fold NMQ03_10430 PF00664 ABC transporter transmembrane region NMQ03_10430 PF00005 ABC transporter NMQ03_10435 PF00664 ABC transporter transmembrane region NMQ03_10435 PF00005 ABC transporter NMQ03_10445 PF00005 ABC transporter NMQ03_10445 PF17755 UvrA DNA-binding domain NMQ03_10445 PF17760 UvrA interaction domain NMQ03_10450 PF13419 Haloacid dehalogenase-like hydrolase NMQ03_10455 PF01553 Acyltransferase NMQ03_10455 PF00501 AMP-binding enzyme NMQ03_10460 PF02151 UvrB/uvrC motif NMQ03_10460 PF08459 UvrC Helix-hairpin-helix N-terminal NMQ03_10460 PF01541 GIY-YIG catalytic domain NMQ03_10465 PF03668 P-loop ATPase protein family NMQ03_10470 PF01933 Uncharacterised protein family UPF0052 NMQ03_10475 PF02650 WhiA C-terminal HTH domain NMQ03_10475 PF14527 WhiA LAGLIDADG-like domain NMQ03_10475 PF10298 WhiA N-terminal LAGLIDADG-like domain NMQ03_10480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NMQ03_10480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NMQ03_10485 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NMQ03_10485 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NMQ03_10490 PF00162 Phosphoglycerate kinase NMQ03_10495 PF00121 Triosephosphate isomerase NMQ03_10500 PF03840 Preprotein translocase SecG subunit NMQ03_10510 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NMQ03_10525 PF00342 Phosphoglucose isomerase NMQ03_10530 PF00923 Transaldolase/Fructose-6-phosphate aldolase NMQ03_10535 PF02779 Transketolase, pyrimidine binding domain NMQ03_10535 PF00456 Transketolase, thiamine diphosphate binding domain NMQ03_10535 PF02780 Transketolase, C-terminal domain NMQ03_10545 PF01040 UbiA prenyltransferase family NMQ03_10555 PF01740 STAS domain NMQ03_10555 PF00916 Sulfate permease family NMQ03_10560 PF02628 Cytochrome oxidase assembly protein NMQ03_10570 PF00005 ABC transporter NMQ03_10580 PF01458 Uncharacterized protein family (UPF0051) NMQ03_10585 PF01458 Uncharacterized protein family (UPF0051) NMQ03_10595 PF00005 ABC transporter NMQ03_10600 PF01883 Iron-sulfur cluster assembly protein NMQ03_10605 PF04228 Putative neutral zinc metallopeptidase NMQ03_10610 PF00501 AMP-binding enzyme NMQ03_10610 PF13193 AMP-binding enzyme C-terminal domain NMQ03_10615 PF02803 Thiolase, C-terminal domain NMQ03_10615 PF00108 Thiolase, N-terminal domain NMQ03_10625 PF00005 ABC transporter NMQ03_10630 PF02632 BioY family NMQ03_10650 PF01872 RibD C-terminal domain NMQ03_10665 PF05661 Protein of unknown function (DUF808) NMQ03_10675 PF00005 ABC transporter NMQ03_10675 PF12848 ABC transporter NMQ03_10675 PF16326 ABC transporter C-terminal domain NMQ03_10680 PF03129 Anticodon binding domain NMQ03_10680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMQ03_10680 PF04073 Aminoacyl-tRNA editing domain NMQ03_10685 PF02104 SURF1 family NMQ03_10715 PF00005 ABC transporter NMQ03_10725 PF00588 SpoU rRNA Methylase family NMQ03_10730 PF01197 Ribosomal protein L31 NMQ03_10735 PF10437 Bacterial lipoate protein ligase C-terminus NMQ03_10735 PF03099 Biotin/lipoate A/B protein ligase family NMQ03_10740 PF11838 ERAP1-like C-terminal domain NMQ03_10740 PF01433 Peptidase family M1 domain NMQ03_10750 PF04174 A circularly permuted ATPgrasp NMQ03_10760 PF08379 Bacterial transglutaminase-like N-terminal region NMQ03_10760 PF01841 Transglutaminase-like superfamily NMQ03_10770 PF00106 short chain dehydrogenase NMQ03_10775 PF00483 Nucleotidyl transferase NMQ03_10780 PF13439 Glycosyltransferase Family 4 NMQ03_10780 PF00534 Glycosyl transferases group 1 NMQ03_10805 PF01575 MaoC like domain NMQ03_10820 PF13409 Glutathione S-transferase, N-terminal domain NMQ03_10840 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NMQ03_10920 PF01546 Peptidase family M20/M25/M40 NMQ03_10920 PF07687 Peptidase dimerisation domain NMQ03_10925 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_10925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_10925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_10940 PF00248 Aldo/keto reductase family NMQ03_10945 PF02673 Bacitracin resistance protein BacA NMQ03_10950 PF01406 tRNA synthetases class I (C) catalytic domain NMQ03_10960 PF13419 Haloacid dehalogenase-like hydrolase NMQ03_10965 PF00571 CBS domain NMQ03_10965 PF02163 Peptidase family M50 NMQ03_10970 PF08704 tRNA methyltransferase complex GCD14 subunit NMQ03_10975 PF00004 ATPase family associated with various cellular activities (AAA) NMQ03_10975 PF16450 Proteasomal ATPase OB C-terminal domain NMQ03_10975 PF17758 Proteasomal ATPase OB N-terminal domain NMQ03_10980 PF03136 Pup-ligase protein NMQ03_10985 PF05639 Pup-like protein NMQ03_10990 PF00227 Proteasome subunit NMQ03_10995 PF00227 Proteasome subunit NMQ03_11000 PF03136 Pup-ligase protein NMQ03_11010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NMQ03_11015 PF13280 WYL domain NMQ03_11025 PF02416 mttA/Hcf106 family NMQ03_11030 PF00902 Sec-independent protein translocase protein (TatC) NMQ03_11035 PF08148 DSHCT (NUC185) domain NMQ03_11035 PF00271 Helicase conserved C-terminal domain NMQ03_11035 PF00270 DEAD/DEAH box helicase NMQ03_11040 PF07969 Amidohydrolase family NMQ03_11045 PF00535 Glycosyl transferase family 2 NMQ03_11050 PF13397 RNA polymerase-binding protein NMQ03_11055 PF01145 SPFH domain / Band 7 family NMQ03_11070 PF01327 Polypeptide deformylase NMQ03_11080 PF01494 FAD binding domain NMQ03_11085 PF05175 Methyltransferase small domain NMQ03_11090 PF02797 Chalcone and stilbene synthases, C-terminal domain NMQ03_11090 PF00195 Chalcone and stilbene synthases, N-terminal domain NMQ03_11115 PF02885 Glycosyl transferase family, helical bundle domain NMQ03_11115 PF00591 Glycosyl transferase family, a/b domain NMQ03_11120 PF00510 Cytochrome c oxidase subunit III NMQ03_11125 PF00034 Cytochrome c NMQ03_11125 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NMQ03_11130 PF00355 Rieske [2Fe-2S] domain NMQ03_11135 PF13631 Cytochrome b(N-terminal)/b6/petB NMQ03_11140 PF07729 FCD domain NMQ03_11140 PF00392 Bacterial regulatory proteins, gntR family NMQ03_11150 PF12270 Cytochrome c oxidase subunit IV NMQ03_11155 PF00115 Cytochrome C and Quinol oxidase polypeptide I NMQ03_11160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NMQ03_11170 PF07687 Peptidase dimerisation domain NMQ03_11170 PF01546 Peptidase family M20/M25/M40 NMQ03_11175 PF11241 Protein of unknown function (DUF3043) NMQ03_11180 PF01180 Dihydroorotate dehydrogenase NMQ03_11190 PF01255 Putative undecaprenyl diphosphate synthase NMQ03_11195 PF02565 Recombination protein O C terminal NMQ03_11195 PF11967 Recombination protein O N terminal NMQ03_11200 PF00682 HMGL-like NMQ03_11200 PF08502 LeuA allosteric (dimerisation) domain NMQ03_11205 PF05649 Peptidase family M13 NMQ03_11205 PF01431 Peptidase family M13 NMQ03_11210 PF03816 Cell envelope-related transcriptional attenuator domain NMQ03_11210 PF13399 LytR cell envelope-related transcriptional attenuator NMQ03_11215 PF07650 KH domain NMQ03_11215 PF01926 50S ribosome-binding GTPase NMQ03_11220 PF00571 CBS domain NMQ03_11220 PF03471 Transporter associated domain NMQ03_11220 PF01595 Cyclin M transmembrane N-terminal domain NMQ03_11225 PF02130 Uncharacterized protein family UPF0054 NMQ03_11230 PF02562 PhoH-like protein NMQ03_11240 PF04452 RNA methyltransferase NMQ03_11245 PF00226 DnaJ domain NMQ03_11245 PF01556 DnaJ C terminal domain NMQ03_11245 PF00684 DnaJ central domain NMQ03_11250 PF01628 HrcA protein C terminal domain NMQ03_11250 PF08220 DeoR-like helix-turn-helix domain NMQ03_11270 PF00009 Elongation factor Tu GTP binding domain NMQ03_11270 PF00679 Elongation factor G C-terminus NMQ03_11270 PF06421 GTP-binding protein LepA C-terminus NMQ03_11280 PF01649 Ribosomal protein S20 NMQ03_11330 PF02645 Uncharacterised protein, DegV family COG1307 NMQ03_11335 PF13603 Leucyl-tRNA synthetase, Domain 2 NMQ03_11335 PF00133 tRNA synthetases class I (I, L, M and V) NMQ03_11335 PF09334 tRNA synthetases class I (M) NMQ03_11335 PF08264 Anticodon-binding domain of tRNA NMQ03_11340 PF00355 Rieske [2Fe-2S] domain NMQ03_11345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMQ03_11345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMQ03_11350 PF00230 Major intrinsic protein NMQ03_11355 PF01266 FAD dependent oxidoreductase NMQ03_11355 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NMQ03_11360 PF04198 Putative sugar-binding domain NMQ03_11365 PF00248 Aldo/keto reductase family NMQ03_11375 PF13439 Glycosyltransferase Family 4 NMQ03_11380 PF17764 3′ DNA-binding domain (3′BD) NMQ03_11385 PF00438 S-adenosylmethionine synthetase, N-terminal domain NMQ03_11385 PF02773 S-adenosylmethionine synthetase, C-terminal domain NMQ03_11385 PF02772 S-adenosylmethionine synthetase, central domain NMQ03_11390 PF04127 DNA / pantothenate metabolism flavoprotein NMQ03_11390 PF02441 Flavoprotein NMQ03_11395 PF01192 RNA polymerase Rpb6 NMQ03_11400 PF00625 Guanylate kinase NMQ03_11405 PF00625 Guanylate kinase NMQ03_11410 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NMQ03_11420 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NMQ03_11420 PF00117 Glutamine amidotransferase class-I NMQ03_11430 PF01979 Amidohydrolase family NMQ03_11435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NMQ03_11435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NMQ03_11440 PF00156 Phosphoribosyl transferase domain NMQ03_11450 PF01029 NusB family NMQ03_11455 PF08207 Elongation factor P (EF-P) KOW-like domain NMQ03_11455 PF09285 Elongation factor P, C-terminal NMQ03_11455 PF01132 Elongation factor P (EF-P) OB domain NMQ03_11465 PF01761 3-dehydroquinate synthase NMQ03_11470 PF01202 Shikimate kinase NMQ03_11480 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NMQ03_11480 PF08501 Shikimate dehydrogenase substrate binding domain NMQ03_11480 PF01488 Shikimate / quinate 5-dehydrogenase NMQ03_11490 PF03652 Holliday junction resolvase NMQ03_11495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NMQ03_11495 PF01411 tRNA synthetases class II (A) NMQ03_11495 PF02272 DHHA1 domain NMQ03_11510 PF01479 S4 domain NMQ03_11510 PF00163 Ribosomal protein S4/S9 N-terminal domain NMQ03_11515 PF16193 AAA C-terminal domain NMQ03_11515 PF00004 ATPase family associated with various cellular activities (AAA) NMQ03_11515 PF12002 MgsA AAA+ ATPase C terminal NMQ03_11535 PF00890 FAD binding domain NMQ03_11555 PF01336 OB-fold nucleic acid binding domain NMQ03_11555 PF00152 tRNA synthetases class II (D, K and N) NMQ03_11555 PF02938 GAD domain NMQ03_11560 PF13520 Amino acid permease NMQ03_11570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NMQ03_11575 PF03993 Domain of Unknown Function (DUF349) NMQ03_11580 PF02824 TGS domain NMQ03_11580 PF04607 Region found in RelA / SpoT proteins NMQ03_11580 PF13291 ACT domain NMQ03_11585 PF07549 SecD/SecF GG Motif NMQ03_11585 PF02355 Protein export membrane protein NMQ03_11590 PF07549 SecD/SecF GG Motif NMQ03_11590 PF02355 Protein export membrane protein NMQ03_11600 PF17864 RuvB AAA lid domain NMQ03_11600 PF05491 RuvB C-terminal winged helix domain NMQ03_11600 PF05496 Holliday junction DNA helicase RuvB P-loop domain NMQ03_11605 PF05496 Holliday junction DNA helicase RuvB P-loop domain NMQ03_11605 PF17864 RuvB AAA lid domain NMQ03_11605 PF05491 RuvB C-terminal winged helix domain NMQ03_11610 PF01330 RuvA N terminal domain NMQ03_11610 PF07499 RuvA, C-terminal domain NMQ03_11615 PF02075 Crossover junction endodeoxyribonuclease RuvC NMQ03_11620 PF01709 Transcriptional regulator NMQ03_11625 PF01174 SNO glutamine amidotransferase family NMQ03_11630 PF08245 Mur ligase middle domain NMQ03_11630 PF08353 Domain of unknown function (DUF1727) NMQ03_11635 PF07685 CobB/CobQ-like glutamine amidotransferase domain NMQ03_11640 PF00175 Oxidoreductase NAD-binding domain NMQ03_11640 PF00111 2Fe-2S iron-sulfur cluster binding domain NMQ03_11640 PF00970 Oxidoreductase FAD-binding domain NMQ03_11645 PF01432 Peptidase family M3 NMQ03_11650 PF01680 SOR/SNZ family NMQ03_11655 PF01066 CDP-alcohol phosphatidyltransferase NMQ03_11660 PF01230 HIT domain NMQ03_11665 PF03129 Anticodon binding domain NMQ03_11665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMQ03_11665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NMQ03_11670 PF02811 PHP domain NMQ03_11670 PF14579 Helix-hairpin-helix motif NMQ03_11670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NMQ03_11670 PF07733 Bacterial DNA polymerase III alpha NTPase domain NMQ03_11685 PF00800 Prephenate dehydratase NMQ03_11685 PF01817 Chorismate mutase type II NMQ03_11685 PF01842 ACT domain NMQ03_11695 PF02586 SOS response associated peptidase (SRAP) NMQ03_11700 PF00462 Glutaredoxin NMQ03_11715 PF03551 Transcriptional regulator PadR-like family NMQ03_11730 PF02545 Maf-like protein NMQ03_11730 PF00293 NUDIX domain NMQ03_11775 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NMQ03_11780 PF12706 Beta-lactamase superfamily domain NMQ03_11780 PF00753 Metallo-beta-lactamase superfamily NMQ03_11795 PF01594 AI-2E family transporter NMQ03_11800 PF00582 Universal stress protein family NMQ03_11810 PF00582 Universal stress protein family NMQ03_11815 PF01522 Polysaccharide deacetylase NMQ03_11840 PF00582 Universal stress protein family NMQ03_11845 PF00196 Bacterial regulatory proteins, luxR family NMQ03_11845 PF00072 Response regulator receiver domain NMQ03_11850 PF07730 Histidine kinase NMQ03_11850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_11850 PF13185 GAF domain NMQ03_11850 PF13492 GAF domain NMQ03_11860 PF00582 Universal stress protein family NMQ03_11870 PF00011 Hsp20/alpha crystallin family NMQ03_11875 PF00391 PEP-utilising enzyme, mobile domain NMQ03_11875 PF02896 PEP-utilising enzyme, TIM barrel domain NMQ03_11875 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NMQ03_11880 PF00690 Cation transporter/ATPase, N-terminus NMQ03_11880 PF00689 Cation transporting ATPase, C-terminus NMQ03_11890 PF00403 Heavy-metal-associated domain NMQ03_11925 PF00582 Universal stress protein family NMQ03_11945 PF07859 alpha/beta hydrolase fold NMQ03_11955 PF00535 Glycosyl transferase family 2 NMQ03_11985 PF04012 PspA/IM30 family NMQ03_12045 PF02384 N-6 DNA Methylase NMQ03_12070 PF00268 Ribonucleotide reductase, small chain NMQ03_12075 PF08343 Ribonucleotide reductase N-terminal NMQ03_12075 PF02867 Ribonucleotide reductase, barrel domain NMQ03_12075 PF00317 Ribonucleotide reductase, all-alpha domain NMQ03_12080 PF07972 NrdI Flavodoxin like NMQ03_12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_12110 PF03466 LysR substrate binding domain NMQ03_12125 PF08267 Cobalamin-independent synthase, N-terminal domain NMQ03_12125 PF01717 Cobalamin-independent synthase, Catalytic domain NMQ03_12130 PF02219 Methylenetetrahydrofolate reductase NMQ03_12160 PF17863 AAA lid domain NMQ03_12160 PF07726 ATPase family associated with various cellular activities (AAA) NMQ03_12175 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_12180 PF01547 Bacterial extracellular solute-binding protein NMQ03_12185 PF00480 ROK family NMQ03_12190 PF05175 Methyltransferase small domain NMQ03_12195 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_12205 PF00474 Sodium:solute symporter family NMQ03_12235 PF01467 Cytidylyltransferase-like NMQ03_12245 PF00171 Aldehyde dehydrogenase family NMQ03_12250 PF00696 Amino acid kinase family NMQ03_12250 PF01472 PUA domain NMQ03_12255 PF09269 Domain of unknown function (DUF1967) NMQ03_12255 PF01018 GTP1/OBG NMQ03_12255 PF01926 50S ribosome-binding GTPase NMQ03_12260 PF01016 Ribosomal L27 protein NMQ03_12265 PF00829 Ribosomal prokaryotic L21 protein NMQ03_12270 PF08543 Phosphomethylpyrimidine kinase NMQ03_12270 PF03070 TENA/THI-4/PQQC family NMQ03_12270 PF02581 Thiamine monophosphate synthase NMQ03_12275 PF10150 Ribonuclease E/G family NMQ03_12285 PF00334 Nucleoside diphosphate kinase NMQ03_12295 PF08245 Mur ligase middle domain NMQ03_12295 PF02875 Mur ligase family, glutamate ligase domain NMQ03_12300 PF08264 Anticodon-binding domain of tRNA NMQ03_12300 PF00133 tRNA synthetases class I (I, L, M and V) NMQ03_12310 PF00106 short chain dehydrogenase NMQ03_12315 PF04343 Protein of unknown function, DUF488 NMQ03_12320 PF08264 Anticodon-binding domain of tRNA NMQ03_12320 PF00133 tRNA synthetases class I (I, L, M and V) NMQ03_12325 PF01323 DSBA-like thioredoxin domain NMQ03_12330 PF07724 AAA domain (Cdc48 subfamily) NMQ03_12330 PF06689 ClpX C4-type zinc finger NMQ03_12330 PF10431 C-terminal, D2-small domain, of ClpB protein NMQ03_12335 PF00574 Clp protease NMQ03_12340 PF00574 Clp protease NMQ03_12345 PF05697 Bacterial trigger factor protein (TF) NMQ03_12345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NMQ03_12345 PF05698 Bacterial trigger factor protein (TF) C-terminus NMQ03_12360 PF06827 Zinc finger found in FPG and IleRS NMQ03_12360 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NMQ03_12360 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NMQ03_12365 PF02502 Ribose/Galactose Isomerase NMQ03_12390 PF00924 Mechanosensitive ion channel NMQ03_12395 PF01152 Bacterial-like globin NMQ03_12415 PF13276 HTH-like domain NMQ03_12415 PF00665 Integrase core domain NMQ03_12415 PF13333 Integrase core domain NMQ03_12420 PF04542 Sigma-70 region 2 NMQ03_12420 PF08281 Sigma-70, region 4 NMQ03_12430 PF00005 ABC transporter NMQ03_12430 PF12848 ABC transporter NMQ03_12440 PF00436 Single-strand binding protein family NMQ03_12455 PF01261 Xylose isomerase-like TIM barrel NMQ03_12460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMQ03_12460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMQ03_12475 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_12475 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_12480 PF00356 Bacterial regulatory proteins, lacI family NMQ03_12490 PF01263 Aldose 1-epimerase NMQ03_12505 PF00929 Exonuclease NMQ03_12515 PF01327 Polypeptide deformylase NMQ03_12530 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NMQ03_12530 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NMQ03_12545 PF03883 Peroxide stress protein YaaA NMQ03_12550 PF02591 C4-type zinc ribbon domain NMQ03_12555 PF01784 NIF3 (NGG1p interacting factor 3) NMQ03_12560 PF01625 Peptide methionine sulfoxide reductase NMQ03_12565 PF00291 Pyridoxal-phosphate dependent enzyme NMQ03_12570 PF00132 Bacterial transferase hexapeptide (six repeats) NMQ03_12575 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NMQ03_12575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMQ03_12600 PF00578 AhpC/TSA family NMQ03_12605 PF11253 Protein of unknown function (DUF3052) NMQ03_12615 PF17853 GGDEF-like domain NMQ03_12615 PF13556 PucR C-terminal helix-turn-helix domain NMQ03_12620 PF00698 Acyl transferase domain NMQ03_12625 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NMQ03_12625 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NMQ03_12630 PF00550 Phosphopantetheine attachment site NMQ03_12635 PF00109 Beta-ketoacyl synthase, N-terminal domain NMQ03_12635 PF02801 Beta-ketoacyl synthase, C-terminal domain NMQ03_12645 PF02899 Phage integrase, N-terminal SAM-like domain NMQ03_12645 PF00589 Phage integrase family NMQ03_12655 PF01078 Magnesium chelatase, subunit ChlI NMQ03_12655 PF13335 Magnesium chelatase, subunit ChlI C-terminal NMQ03_12660 PF02021 Uncharacterised protein family UPF0102 NMQ03_12665 PF10611 Protein of unknown function (DUF2469) NMQ03_12670 PF01351 Ribonuclease HII NMQ03_12675 PF10502 Signal peptidase, peptidase S26 NMQ03_12680 PF10502 Signal peptidase, peptidase S26 NMQ03_12685 PF01245 Ribosomal protein L19 NMQ03_12695 PF01782 RimM N-terminal domain NMQ03_12705 PF00886 Ribosomal protein S16 NMQ03_12725 PF13667 ThiC-associated domain NMQ03_12725 PF01964 Radical SAM ThiC family NMQ03_12735 PF02881 SRP54-type protein, helical bundle domain NMQ03_12735 PF00448 SRP54-type protein, GTPase domain NMQ03_12735 PF02978 Signal peptide binding domain NMQ03_12740 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NMQ03_12740 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NMQ03_12745 PF00543 Nitrogen regulatory protein P-II NMQ03_12750 PF00909 Ammonium Transporter Family NMQ03_12755 PF07690 Major Facilitator Superfamily NMQ03_12760 PF00448 SRP54-type protein, GTPase domain NMQ03_12760 PF02881 SRP54-type protein, helical bundle domain NMQ03_12765 PF02463 RecF/RecN/SMC N terminal domain NMQ03_12765 PF06470 SMC proteins Flexible Hinge Domain NMQ03_12770 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NMQ03_12770 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NMQ03_12780 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NMQ03_12785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NMQ03_12785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NMQ03_12785 PF06827 Zinc finger found in FPG and IleRS NMQ03_12790 PF00035 Double-stranded RNA binding motif NMQ03_12790 PF14622 Ribonuclease-III-like NMQ03_12795 PF01783 Ribosomal L32p protein family NMQ03_12800 PF02620 Large ribosomal RNA subunit accumulation protein YceD NMQ03_12805 PF01467 Cytidylyltransferase-like NMQ03_12810 PF00155 Aminotransferase class I and II NMQ03_12825 PF00270 DEAD/DEAH box helicase NMQ03_12825 PF00271 Helicase conserved C-terminal domain NMQ03_12825 PF17191 RecG wedge domain NMQ03_12830 PF13684 Dihydroxyacetone kinase family NMQ03_12830 PF02734 DAK2 domain NMQ03_12835 PF02769 AIR synthase related protein, C-terminal domain NMQ03_12835 PF00586 AIR synthase related protein, N-terminal domain NMQ03_12845 PF07478 D-ala D-ala ligase C-terminus NMQ03_12845 PF01820 D-ala D-ala ligase N-terminus NMQ03_12850 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NMQ03_12850 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NMQ03_12855 PF01553 Acyltransferase NMQ03_12860 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NMQ03_12865 PF00694 Aconitase C-terminal domain NMQ03_12870 PF00330 Aconitase family (aconitate hydratase) NMQ03_12875 PF09339 IclR helix-turn-helix domain NMQ03_12875 PF01614 Bacterial transcriptional regulator NMQ03_12920 PF00749 tRNA synthetases class I (E and Q), catalytic domain NMQ03_12925 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_12930 PF16123 Hydroxyacylglutathione hydrolase C-terminus NMQ03_12930 PF00753 Metallo-beta-lactamase superfamily NMQ03_12940 PF01063 Amino-transferase class IV NMQ03_12945 PF00180 Isocitrate/isopropylmalate dehydrogenase NMQ03_12955 PF02687 FtsX-like permease family NMQ03_12955 PF00005 ABC transporter NMQ03_12955 PF12704 MacB-like periplasmic core domain NMQ03_12965 PF01842 ACT domain NMQ03_12965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMQ03_12965 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMQ03_12970 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NMQ03_12970 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NMQ03_12975 PF10369 Small subunit of acetolactate synthase NMQ03_12985 PF00920 Dehydratase family NMQ03_12990 PF00573 Ribosomal protein L4/L1 family NMQ03_12995 PF07995 Glucose / Sorbosone dehydrogenase NMQ03_13010 PF00578 AhpC/TSA family NMQ03_13020 PF02469 Fasciclin domain NMQ03_13025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NMQ03_13030 PF06039 Malate:quinone oxidoreductase (Mqo) NMQ03_13035 PF00873 AcrB/AcrD/AcrF family NMQ03_13040 PF00296 Luciferase-like monooxygenase NMQ03_13045 PF01047 MarR family NMQ03_13050 PF01841 Transglutaminase-like superfamily NMQ03_13050 PF08379 Bacterial transglutaminase-like N-terminal region NMQ03_13070 PF00266 Aminotransferase class-V NMQ03_13075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NMQ03_13075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NMQ03_13080 PF02910 Fumarate reductase flavoprotein C-term NMQ03_13080 PF00890 FAD binding domain NMQ03_13085 PF02445 Quinolinate synthetase A protein NMQ03_13095 PF00324 Amino acid permease NMQ03_13100 PF00364 Biotin-requiring enzyme NMQ03_13100 PF00561 alpha/beta hydrolase fold NMQ03_13110 PF00083 Sugar (and other) transporter NMQ03_13110 PF07690 Major Facilitator Superfamily NMQ03_13115 PF01614 Bacterial transcriptional regulator NMQ03_13115 PF09339 IclR helix-turn-helix domain NMQ03_13125 PF13476 AAA domain NMQ03_13130 PF00149 Calcineurin-like phosphoesterase NMQ03_13130 PF12320 Type 5 capsule protein repressor C-terminal domain NMQ03_13135 PF00230 Major intrinsic protein NMQ03_13150 PF11490 DNA polymerase III polC-type N-terminus II NMQ03_13150 PF00929 Exonuclease NMQ03_13150 PF07733 Bacterial DNA polymerase III alpha NTPase domain NMQ03_13150 PF02811 PHP domain NMQ03_13150 PF14579 Helix-hairpin-helix motif NMQ03_13150 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NMQ03_13155 PF09335 SNARE associated Golgi protein NMQ03_13160 PF01725 Ham1 family NMQ03_13165 PF01138 3' exoribonuclease family, domain 1 NMQ03_13165 PF03725 3' exoribonuclease family, domain 2 NMQ03_13170 PF00753 Metallo-beta-lactamase superfamily NMQ03_13170 PF12706 Beta-lactamase superfamily domain NMQ03_13175 PF01177 Asp/Glu/Hydantoin racemase NMQ03_13185 PF02617 ATP-dependent Clp protease adaptor protein ClpS NMQ03_13190 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NMQ03_13190 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NMQ03_13195 PF00857 Isochorismatase family NMQ03_13200 PF04851 Type III restriction enzyme, res subunit NMQ03_13210 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NMQ03_13220 PF13732 Domain of unknown function (DUF4162) NMQ03_13220 PF00005 ABC transporter NMQ03_13235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMQ03_13250 PF01594 AI-2E family transporter NMQ03_13265 PF01939 Endonuclease NucS NMQ03_13270 PF00313 'Cold-shock' DNA-binding domain NMQ03_13275 PF09924 Uncharacterised conserved protein (DUF2156) NMQ03_13280 PF00756 Putative esterase NMQ03_13290 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NMQ03_13295 PF02874 ATP synthase alpha/beta family, beta-barrel domain NMQ03_13295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMQ03_13300 PF00231 ATP synthase NMQ03_13305 PF00306 ATP synthase alpha/beta chain, C terminal domain NMQ03_13305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMQ03_13305 PF02874 ATP synthase alpha/beta family, beta-barrel domain NMQ03_13310 PF00213 ATP synthase delta (OSCP) subunit NMQ03_13315 PF00430 ATP synthase B/B' CF(0) NMQ03_13320 PF00137 ATP synthase subunit C NMQ03_13325 PF00119 ATP synthase A chain NMQ03_13340 PF00953 Glycosyl transferase family 4 NMQ03_13355 PF01300 Telomere recombination NMQ03_13360 PF13649 Methyltransferase domain NMQ03_13360 PF17827 PrmC N-terminal domain NMQ03_13365 PF03462 PCRF domain NMQ03_13365 PF00472 RF-1 domain NMQ03_13375 PF00288 GHMP kinases N terminal domain NMQ03_13380 PF00291 Pyridoxal-phosphate dependent enzyme NMQ03_13385 PF03447 Homoserine dehydrogenase, NAD binding domain NMQ03_13385 PF01842 ACT domain NMQ03_13385 PF00742 Homoserine dehydrogenase NMQ03_13390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NMQ03_13390 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NMQ03_13395 PF00750 tRNA synthetases class I (R) NMQ03_13395 PF03485 Arginyl tRNA synthetase N terminal domain NMQ03_13395 PF05746 DALR anticodon binding domain NMQ03_13410 PF00042 Globin NMQ03_13410 PF00175 Oxidoreductase NAD-binding domain NMQ03_13410 PF00970 Oxidoreductase FAD-binding domain NMQ03_13425 PF16485 Protealysin propeptide NMQ03_13425 PF01447 Thermolysin metallopeptidase, catalytic domain NMQ03_13425 PF02868 Thermolysin metallopeptidase, alpha-helical domain NMQ03_13435 PF00271 Helicase conserved C-terminal domain NMQ03_13435 PF00270 DEAD/DEAH box helicase NMQ03_13435 PF11898 Domain of unknown function (DUF3418) NMQ03_13435 PF04408 Helicase associated domain (HA2) NMQ03_13435 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NMQ03_13440 PF01230 HIT domain NMQ03_13445 PF00107 Zinc-binding dehydrogenase NMQ03_13445 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_13450 PF00581 Rhodanese-like domain NMQ03_13455 PF00291 Pyridoxal-phosphate dependent enzyme NMQ03_13465 PF01475 Ferric uptake regulator family NMQ03_13475 PF00005 ABC transporter NMQ03_13480 PF01297 Zinc-uptake complex component A periplasmic NMQ03_13485 PF00571 CBS domain NMQ03_13485 PF01595 Cyclin M transmembrane N-terminal domain NMQ03_13490 PF00571 CBS domain NMQ03_13490 PF03471 Transporter associated domain NMQ03_13490 PF01595 Cyclin M transmembrane N-terminal domain NMQ03_13495 PF16870 2-oxoglutarate dehydrogenase C-terminal NMQ03_13495 PF02779 Transketolase, pyrimidine binding domain NMQ03_13495 PF00676 Dehydrogenase E1 component NMQ03_13495 PF16078 2-oxoglutarate dehydrogenase N-terminus NMQ03_13495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMQ03_13530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NMQ03_13540 PF00459 Inositol monophosphatase family NMQ03_13550 PF08241 Methyltransferase domain NMQ03_13565 PF13180 PDZ domain NMQ03_13565 PF17820 PDZ domain NMQ03_13580 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_13580 PF00107 Zinc-binding dehydrogenase NMQ03_13590 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_13595 PF00365 Phosphofructokinase NMQ03_13600 PF03633 Glycosyl hydrolase family 65, C-terminal domain NMQ03_13600 PF03632 Glycosyl hydrolase family 65 central catalytic domain NMQ03_13600 PF03636 Glycosyl hydrolase family 65, N-terminal domain NMQ03_13600 PF02358 Trehalose-phosphatase NMQ03_13615 PF01668 SmpB protein NMQ03_13620 PF01551 Peptidase family M23 NMQ03_13625 PF02687 FtsX-like permease family NMQ03_13625 PF18075 FtsX extracellular domain NMQ03_13630 PF00005 ABC transporter NMQ03_13635 PF00472 RF-1 domain NMQ03_13635 PF03462 PCRF domain NMQ03_13670 PF00437 Type II/IV secretion system protein NMQ03_13675 PF00756 Putative esterase NMQ03_13675 PF08310 LGFP repeat NMQ03_13680 PF00483 Nucleotidyl transferase NMQ03_13685 PF16363 GDP-mannose 4,6 dehydratase NMQ03_13690 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NMQ03_13695 PF00535 Glycosyl transferase family 2 NMQ03_13710 PF00535 Glycosyl transferase family 2 NMQ03_13755 PF17994 Galactofuranosyltransferase 2 N-terminal NMQ03_13760 PF03275 UDP-galactopyranose mutase NMQ03_13765 PF00132 Bacterial transferase hexapeptide (six repeats) NMQ03_13770 PF01580 FtsK/SpoIIIE family NMQ03_13770 PF12538 DNA transporter NMQ03_13780 PF02467 Transcription factor WhiB NMQ03_13785 PF07568 Histidine kinase NMQ03_13785 PF12282 Signal transduction histidine kinase NMQ03_13785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_13790 PF05088 Bacterial NAD-glutamate dehydrogenase NMQ03_13830 PF06224 Winged helix DNA-binding domain NMQ03_13835 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NMQ03_13835 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NMQ03_13845 PF10647 Lipoprotein LpqB beta-propeller domain NMQ03_13845 PF10646 Sporulation and spore germination NMQ03_13850 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_13850 PF00672 HAMP domain NMQ03_13850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_13855 PF00486 Transcriptional regulatory protein, C terminal NMQ03_13855 PF00072 Response regulator receiver domain NMQ03_13875 PF07726 ATPase family associated with various cellular activities (AAA) NMQ03_13875 PF17863 AAA lid domain NMQ03_13900 PF00005 ABC transporter NMQ03_13900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMQ03_13905 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_13905 PF12911 N-terminal TM domain of oligopeptide transport permease C NMQ03_13910 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_13925 PF00266 Aminotransferase class-V NMQ03_13945 PF00226 DnaJ domain NMQ03_13945 PF01556 DnaJ C terminal domain NMQ03_13945 PF00684 DnaJ central domain NMQ03_13950 PF00588 SpoU rRNA Methylase family NMQ03_13955 PF04542 Sigma-70 region 2 NMQ03_13955 PF04545 Sigma-70, region 4 NMQ03_13965 PF02585 GlcNAc-PI de-N-acetylase NMQ03_13970 PF00766 Electron transfer flavoprotein FAD-binding domain NMQ03_13970 PF01012 Electron transfer flavoprotein domain NMQ03_13975 PF01012 Electron transfer flavoprotein domain NMQ03_13980 PF13180 PDZ domain NMQ03_13985 PF04536 TPM domain NMQ03_13990 PF04012 PspA/IM30 family NMQ03_13995 PF00875 DNA photolyase NMQ03_13995 PF03441 FAD binding domain of DNA photolyase NMQ03_14035 PF00570 HRDC domain NMQ03_14035 PF00580 UvrD/REP helicase N-terminal domain NMQ03_14035 PF13361 UvrD-like helicase C-terminal domain NMQ03_14040 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NMQ03_14040 PF09297 NADH pyrophosphatase zinc ribbon domain NMQ03_14040 PF00293 NUDIX domain NMQ03_14050 PF00580 UvrD/REP helicase N-terminal domain NMQ03_14050 PF13361 UvrD-like helicase C-terminal domain NMQ03_14055 PF12705 PD-(D/E)XK nuclease superfamily NMQ03_14055 PF00580 UvrD/REP helicase N-terminal domain NMQ03_14055 PF13361 UvrD-like helicase C-terminal domain NMQ03_14070 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMQ03_14075 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14080 PF00005 ABC transporter NMQ03_14085 PF00202 Aminotransferase class-III NMQ03_14090 PF00296 Luciferase-like monooxygenase NMQ03_14095 PF00490 Delta-aminolevulinic acid dehydratase NMQ03_14105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NMQ03_14105 PF03900 Porphobilinogen deaminase, C-terminal domain NMQ03_14110 PF00762 Ferrochelatase NMQ03_14115 PF06778 Chlorite dismutase NMQ03_14135 PF01208 Uroporphyrinogen decarboxylase (URO-D) NMQ03_14140 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NMQ03_14140 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NMQ03_14140 PF01488 Shikimate / quinate 5-dehydrogenase NMQ03_14145 PF00581 Rhodanese-like domain NMQ03_14145 PF00899 ThiF family NMQ03_14165 PF05690 Thiazole biosynthesis protein ThiG NMQ03_14175 PF01266 FAD dependent oxidoreductase NMQ03_14175 PF05690 Thiazole biosynthesis protein ThiG NMQ03_14180 PF02581 Thiamine monophosphate synthase NMQ03_14185 PF00773 RNB domain NMQ03_14185 PF00575 S1 RNA binding domain NMQ03_14190 PF00270 DEAD/DEAH box helicase NMQ03_14190 PF00271 Helicase conserved C-terminal domain NMQ03_14195 PF01555 DNA methylase NMQ03_14205 PF05195 Aminopeptidase P, N-terminal domain NMQ03_14205 PF00557 Metallopeptidase family M24 NMQ03_14215 PF00571 CBS domain NMQ03_14215 PF01769 Divalent cation transporter NMQ03_14215 PF03448 MgtE intracellular N domain NMQ03_14225 PF10609 NUBPL iron-transfer P-loop NTPase NMQ03_14225 PF01883 Iron-sulfur cluster assembly protein NMQ03_14230 PF02416 mttA/Hcf106 family NMQ03_14245 PF08281 Sigma-70, region 4 NMQ03_14245 PF04542 Sigma-70 region 2 NMQ03_14250 PF01596 O-methyltransferase NMQ03_14270 PF03641 Possible lysine decarboxylase NMQ03_14275 PF00005 ABC transporter NMQ03_14280 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMQ03_14285 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14290 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14295 PF07687 Peptidase dimerisation domain NMQ03_14295 PF01546 Peptidase family M20/M25/M40 NMQ03_14320 PF16363 GDP-mannose 4,6 dehydratase NMQ03_14325 PF00285 Citrate synthase, C-terminal domain NMQ03_14335 PF00037 4Fe-4S binding domain NMQ03_14345 PF00679 Elongation factor G C-terminus NMQ03_14345 PF00009 Elongation factor Tu GTP binding domain NMQ03_14345 PF03144 Elongation factor Tu domain 2 NMQ03_14345 PF14492 Elongation Factor G, domain II NMQ03_14355 PF00005 ABC transporter NMQ03_14355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMQ03_14360 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14360 PF12911 N-terminal TM domain of oligopeptide transport permease C NMQ03_14365 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14380 PF05656 Protein of unknown function (DUF805) NMQ03_14385 PF06071 Protein of unknown function (DUF933) NMQ03_14385 PF01926 50S ribosome-binding GTPase NMQ03_14390 PF02646 RmuC family NMQ03_14395 PF02401 LytB protein NMQ03_14405 PF02601 Exonuclease VII, large subunit NMQ03_14405 PF13742 OB-fold nucleic acid binding domain NMQ03_14410 PF02609 Exonuclease VII small subunit NMQ03_14415 PF03976 Polyphosphate kinase 2 (PPK2) NMQ03_14420 PF00155 Aminotransferase class I and II NMQ03_14430 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14435 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14440 PF00005 ABC transporter NMQ03_14440 PF00571 CBS domain NMQ03_14445 PF02678 Pirin NMQ03_14445 PF05726 Pirin C-terminal cupin domain NMQ03_14450 PF01869 BadF/BadG/BcrA/BcrD ATPase family NMQ03_14455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_14455 PF03466 LysR substrate binding domain NMQ03_14460 PF07690 Major Facilitator Superfamily NMQ03_14480 PF01544 CorA-like Mg2+ transporter protein NMQ03_14495 PF00391 PEP-utilising enzyme, mobile domain NMQ03_14495 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NMQ03_14520 PF00483 Nucleotidyl transferase NMQ03_14545 PF00117 Glutamine amidotransferase class-I NMQ03_14545 PF00958 GMP synthase C terminal domain NMQ03_14545 PF02540 NAD synthase NMQ03_14565 PF01266 FAD dependent oxidoreductase NMQ03_14565 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NMQ03_14570 PF00478 IMP dehydrogenase / GMP reductase domain NMQ03_14605 PF00664 ABC transporter transmembrane region NMQ03_14605 PF00005 ABC transporter NMQ03_14615 PF00478 IMP dehydrogenase / GMP reductase domain NMQ03_14615 PF00571 CBS domain NMQ03_14620 PF01757 Acyltransferase family NMQ03_14630 PF04679 ATP dependent DNA ligase C terminal region NMQ03_14630 PF01068 ATP dependent DNA ligase domain NMQ03_14630 PF04675 DNA ligase N terminus NMQ03_14640 PF00118 TCP-1/cpn60 chaperonin family NMQ03_14645 PF00166 Chaperonin 10 Kd subunit NMQ03_14655 PF18096 THUMP domain-like NMQ03_14660 PF08501 Shikimate dehydrogenase substrate binding domain NMQ03_14665 PF00933 Glycosyl hydrolase family 3 N terminal domain NMQ03_14670 PF04107 Glutamate-cysteine ligase family 2(GCS2) NMQ03_14680 PF00814 Glycoprotease family NMQ03_14690 PF00814 Glycoprotease family NMQ03_14695 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NMQ03_14700 PF01168 Alanine racemase, N-terminal domain NMQ03_14700 PF00842 Alanine racemase, C-terminal domain NMQ03_14710 PF02056 Family 4 glycosyl hydrolase NMQ03_14710 PF11975 Family 4 glycosyl hydrolase C-terminal domain NMQ03_14715 PF13439 Glycosyltransferase Family 4 NMQ03_14715 PF00534 Glycosyl transferases group 1 NMQ03_14720 PF01268 Formate--tetrahydrofolate ligase NMQ03_14730 PF01658 Myo-inositol-1-phosphate synthase NMQ03_14735 PF00248 Aldo/keto reductase family NMQ03_14740 PF00128 Alpha amylase, catalytic domain NMQ03_14740 PF11941 Domain of unknown function (DUF3459) NMQ03_14745 PF00128 Alpha amylase, catalytic domain NMQ03_14750 PF00128 Alpha amylase, catalytic domain NMQ03_14750 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NMQ03_14760 PF01648 4'-phosphopantetheinyl transferase superfamily NMQ03_14765 PF01380 SIS domain NMQ03_14770 PF00485 Phosphoribulokinase / Uridine kinase family NMQ03_14775 PF02557 D-alanyl-D-alanine carboxypeptidase NMQ03_14780 PF01741 Large-conductance mechanosensitive channel, MscL NMQ03_14785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMQ03_14785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMQ03_14785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMQ03_14785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMQ03_14790 PF00535 Glycosyl transferase family 2 NMQ03_14790 PF02709 N-terminal domain of galactosyltransferase NMQ03_14795 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NMQ03_14795 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NMQ03_14800 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NMQ03_14810 PF00380 Ribosomal protein S9/S16 NMQ03_14815 PF00572 Ribosomal protein L13 NMQ03_14850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NMQ03_14855 PF00437 Type II/IV secretion system protein NMQ03_14900 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NMQ03_14905 PF00437 Type II/IV secretion system protein NMQ03_14925 PF00072 Response regulator receiver domain NMQ03_14925 PF00486 Transcriptional regulatory protein, C terminal NMQ03_14930 PF13426 PAS domain NMQ03_14930 PF00672 HAMP domain NMQ03_14930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_14930 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_14935 PF01416 tRNA pseudouridine synthase NMQ03_14940 PF01196 Ribosomal protein L17 NMQ03_14945 PF01000 RNA polymerase Rpb3/RpoA insert domain NMQ03_14945 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NMQ03_14945 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NMQ03_14950 PF00411 Ribosomal protein S11 NMQ03_14955 PF00416 Ribosomal protein S13/S18 NMQ03_14960 PF00444 Ribosomal protein L36 NMQ03_14965 PF01176 Translation initiation factor 1A / IF-1 NMQ03_14970 PF03576 Peptidase family S58 NMQ03_14975 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14980 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_14990 PF00557 Metallopeptidase family M24 NMQ03_15000 PF00344 SecY translocase NMQ03_15005 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NMQ03_15010 PF00327 Ribosomal protein L30p/L7e NMQ03_15015 PF00333 Ribosomal protein S5, N-terminal domain NMQ03_15015 PF03719 Ribosomal protein S5, C-terminal domain NMQ03_15020 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NMQ03_15025 PF00347 Ribosomal protein L6 NMQ03_15030 PF00410 Ribosomal protein S8 NMQ03_15035 PF00673 ribosomal L5P family C-terminus NMQ03_15035 PF00281 Ribosomal protein L5 NMQ03_15040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NMQ03_15045 PF00238 Ribosomal protein L14p/L23e NMQ03_15050 PF00366 Ribosomal protein S17 NMQ03_15060 PF00252 Ribosomal protein L16p/L10e NMQ03_15065 PF07650 KH domain NMQ03_15065 PF00189 Ribosomal protein S3, C-terminal domain NMQ03_15070 PF00237 Ribosomal protein L22p/L17e NMQ03_15075 PF00203 Ribosomal protein S19 NMQ03_15080 PF00181 Ribosomal Proteins L2, RNA binding domain NMQ03_15080 PF03947 Ribosomal Proteins L2, C-terminal domain NMQ03_15085 PF00276 Ribosomal protein L23 NMQ03_15090 PF00573 Ribosomal protein L4/L1 family NMQ03_15095 PF00297 Ribosomal protein L3 NMQ03_15100 PF00338 Ribosomal protein S10p/S20e NMQ03_15105 PF00232 Glycosyl hydrolase family 1 NMQ03_15110 PF03358 NADPH-dependent FMN reductase NMQ03_15110 PF01566 Natural resistance-associated macrophage protein NMQ03_15115 PF03143 Elongation factor Tu C-terminal domain NMQ03_15115 PF00009 Elongation factor Tu GTP binding domain NMQ03_15115 PF03144 Elongation factor Tu domain 2 NMQ03_15120 PF03144 Elongation factor Tu domain 2 NMQ03_15120 PF03764 Elongation factor G, domain IV NMQ03_15120 PF14492 Elongation Factor G, domain II NMQ03_15120 PF00009 Elongation factor Tu GTP binding domain NMQ03_15120 PF00679 Elongation factor G C-terminus NMQ03_15125 PF00177 Ribosomal protein S7p/S5e NMQ03_15130 PF00164 Ribosomal protein S12/S23 NMQ03_15135 PF05000 RNA polymerase Rpb1, domain 4 NMQ03_15135 PF04997 RNA polymerase Rpb1, domain 1 NMQ03_15135 PF00623 RNA polymerase Rpb1, domain 2 NMQ03_15135 PF04983 RNA polymerase Rpb1, domain 3 NMQ03_15135 PF04998 RNA polymerase Rpb1, domain 5 NMQ03_15140 PF04560 RNA polymerase Rpb2, domain 7 NMQ03_15140 PF10385 RNA polymerase beta subunit external 1 domain NMQ03_15140 PF04565 RNA polymerase Rpb2, domain 3 NMQ03_15140 PF04561 RNA polymerase Rpb2, domain 2 NMQ03_15140 PF00562 RNA polymerase Rpb2, domain 6 NMQ03_15140 PF04563 RNA polymerase beta subunit NMQ03_15150 PF00108 Thiolase, N-terminal domain NMQ03_15150 PF02803 Thiolase, C-terminal domain NMQ03_15155 PF03129 Anticodon binding domain NMQ03_15155 PF04073 Aminoacyl-tRNA editing domain NMQ03_15155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMQ03_15160 PF00542 Ribosomal protein L7/L12 C-terminal domain NMQ03_15160 PF16320 Ribosomal protein L7/L12 dimerisation domain NMQ03_15165 PF00466 Ribosomal protein L10 NMQ03_15180 PF00687 Ribosomal protein L1p/L10e family NMQ03_15185 PF00298 Ribosomal protein L11, RNA binding domain NMQ03_15185 PF03946 Ribosomal protein L11, N-terminal domain NMQ03_15190 PF02357 Transcription termination factor nusG NMQ03_15195 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NMQ03_15210 PF00196 Bacterial regulatory proteins, luxR family NMQ03_15210 PF00072 Response regulator receiver domain NMQ03_15235 PF00365 Phosphofructokinase NMQ03_15245 PF07690 Major Facilitator Superfamily NMQ03_15255 PF01571 Aminomethyltransferase folate-binding domain NMQ03_15260 PF03358 NADPH-dependent FMN reductase NMQ03_15260 PF01566 Natural resistance-associated macrophage protein NMQ03_15265 PF08768 Domain of unknown function (DUF1794) NMQ03_15275 PF00486 Transcriptional regulatory protein, C terminal NMQ03_15280 PF00583 Acetyltransferase (GNAT) family NMQ03_15285 PF13090 Polyphosphate kinase C-terminal domain 2 NMQ03_15285 PF17941 Polyphosphate kinase C-terminal domain 1 NMQ03_15285 PF13089 Polyphosphate kinase N-terminal domain NMQ03_15285 PF02503 Polyphosphate kinase middle domain NMQ03_15290 PF00300 Histidine phosphatase superfamily (branch 1) NMQ03_15290 PF00293 NUDIX domain NMQ03_15300 PF00303 Thymidylate synthase NMQ03_15305 PF00186 Dihydrofolate reductase NMQ03_15340 PF01118 Semialdehyde dehydrogenase, NAD binding domain NMQ03_15340 PF02774 Semialdehyde dehydrogenase, dimerisation domain NMQ03_15355 PF01565 FAD binding domain NMQ03_15355 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NMQ03_15360 PF07690 Major Facilitator Superfamily NMQ03_15370 PF13452 N-terminal half of MaoC dehydratase NMQ03_15380 PF00916 Sulfate permease family NMQ03_15380 PF01740 STAS domain NMQ03_15400 PF00248 Aldo/keto reductase family NMQ03_15405 PF00128 Alpha amylase, catalytic domain NMQ03_15410 PF00480 ROK family NMQ03_15415 PF00999 Sodium/hydrogen exchanger family NMQ03_15420 PF13460 NAD(P)H-binding NMQ03_15425 PF00384 Molybdopterin oxidoreductase NMQ03_15425 PF01568 Molydopterin dinucleotide binding domain NMQ03_15430 PF13247 4Fe-4S dicluster domain NMQ03_15430 PF14711 Respiratory nitrate reductase beta C-terminal NMQ03_15435 PF02613 Nitrate reductase delta subunit NMQ03_15435 PF02665 Nitrate reductase gamma subunit NMQ03_15435 PF00384 Molybdopterin oxidoreductase NMQ03_15440 PF00384 Molybdopterin oxidoreductase NMQ03_15440 PF02613 Nitrate reductase delta subunit NMQ03_15440 PF02665 Nitrate reductase gamma subunit NMQ03_15445 PF07690 Major Facilitator Superfamily NMQ03_15470 PF02096 60Kd inner membrane protein NMQ03_15485 PF03880 DbpA RNA binding domain NMQ03_15485 PF00270 DEAD/DEAH box helicase NMQ03_15485 PF00271 Helicase conserved C-terminal domain NMQ03_15500 PF03738 Glutathionylspermidine synthase preATP-grasp NMQ03_15505 PF13520 Amino acid permease NMQ03_15510 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_15510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_15510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_15525 PF01638 HxlR-like helix-turn-helix NMQ03_15530 PF01053 Cys/Met metabolism PLP-dependent enzyme NMQ03_15540 PF02040 Arsenical pump membrane protein NMQ03_15565 PF00501 AMP-binding enzyme NMQ03_15565 PF13193 AMP-binding enzyme C-terminal domain NMQ03_15575 PF00085 Thioredoxin NMQ03_15585 PF07885 Ion channel NMQ03_15595 PF00571 CBS domain NMQ03_15610 PF04461 Protein of unknown function (DUF520) NMQ03_15615 PF03239 Iron permease FTR1 family NMQ03_15620 PF13473 Cupredoxin-like domain NMQ03_15620 PF09375 Imelysin NMQ03_15625 PF04261 Dyp-type peroxidase family NMQ03_15625 PF10518 TAT (twin-arginine translocation) pathway signal sequence NMQ03_15630 PF01435 Peptidase family M48 NMQ03_15640 PF01475 Ferric uptake regulator family NMQ03_15645 PF06628 Catalase-related immune-responsive NMQ03_15645 PF00199 Catalase NMQ03_15655 PF13520 Amino acid permease NMQ03_15665 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_15665 PF00107 Zinc-binding dehydrogenase NMQ03_15670 PF00171 Aldehyde dehydrogenase family NMQ03_15680 PF06722 Protein of unknown function (DUF1205) NMQ03_15690 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_15700 PF00892 EamA-like transporter family NMQ03_15720 PF00535 Glycosyl transferase family 2 NMQ03_15730 PF00202 Aminotransferase class-III NMQ03_15735 PF00171 Aldehyde dehydrogenase family NMQ03_15740 PF05651 Putative sugar diacid recognition NMQ03_15740 PF17853 GGDEF-like domain NMQ03_15740 PF13556 PucR C-terminal helix-turn-helix domain NMQ03_15760 PF00392 Bacterial regulatory proteins, gntR family NMQ03_15760 PF07729 FCD domain NMQ03_15785 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_15790 PF10414 Sirohaem synthase dimerisation region NMQ03_15790 PF14824 Sirohaem biosynthesis protein central NMQ03_15790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMQ03_15805 PF00005 ABC transporter NMQ03_15815 PF01139 tRNA-splicing ligase RtcB NMQ03_15830 PF00009 Elongation factor Tu GTP binding domain NMQ03_15835 PF01507 Phosphoadenosine phosphosulfate reductase family NMQ03_15840 PF01507 Phosphoadenosine phosphosulfate reductase family NMQ03_15845 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NMQ03_15845 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NMQ03_15855 PF03458 UPF0126 domain NMQ03_15870 PF00348 Polyprenyl synthetase NMQ03_15875 PF01494 FAD binding domain NMQ03_15880 PF01209 ubiE/COQ5 methyltransferase family NMQ03_15885 PF00425 chorismate binding enzyme NMQ03_15890 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMQ03_15895 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_15900 PF00005 ABC transporter NMQ03_15905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_15905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_15910 PF00356 Bacterial regulatory proteins, lacI family NMQ03_15915 PF08244 Glycosyl hydrolases family 32 C terminal NMQ03_15915 PF00251 Glycosyl hydrolases family 32 N-terminal domain NMQ03_15920 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_15925 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_15945 PF18374 Enolase N-terminal domain-like NMQ03_15945 PF13378 Enolase C-terminal domain-like NMQ03_15960 PF01566 Natural resistance-associated macrophage protein NMQ03_15965 PF01544 CorA-like Mg2+ transporter protein NMQ03_15980 PF00005 ABC transporter NMQ03_15980 PF13732 Domain of unknown function (DUF4162) NMQ03_15985 PF07690 Major Facilitator Superfamily NMQ03_16010 PF00440 Bacterial regulatory proteins, tetR family NMQ03_16060 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_16070 PF01047 MarR family NMQ03_16085 PF07690 Major Facilitator Superfamily NMQ03_16090 PF01098 Cell cycle protein NMQ03_16095 PF13399 LytR cell envelope-related transcriptional attenuator NMQ03_16095 PF03816 Cell envelope-related transcriptional attenuator domain NMQ03_16105 PF01757 Acyltransferase family NMQ03_16115 PF01494 FAD binding domain NMQ03_16125 PF03795 YCII-related domain NMQ03_16130 PF04542 Sigma-70 region 2 NMQ03_16130 PF08281 Sigma-70, region 4 NMQ03_16135 PF03552 Cellulose synthase NMQ03_16135 PF00535 Glycosyl transferase family 2 NMQ03_16135 PF07238 PilZ domain NMQ03_16140 PF00392 Bacterial regulatory proteins, gntR family NMQ03_16140 PF07702 UTRA domain NMQ03_16155 PF00781 Diacylglycerol kinase catalytic domain NMQ03_16165 PF00364 Biotin-requiring enzyme NMQ03_16165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMQ03_16165 PF02817 e3 binding domain NMQ03_16170 PF02780 Transketolase, C-terminal domain NMQ03_16170 PF02779 Transketolase, pyrimidine binding domain NMQ03_16175 PF00676 Dehydrogenase E1 component NMQ03_16180 PF01037 Lrp/AsnC ligand binding domain NMQ03_16210 PF00534 Glycosyl transferases group 1 NMQ03_16210 PF13439 Glycosyltransferase Family 4 NMQ03_16220 PF16363 GDP-mannose 4,6 dehydratase NMQ03_16250 PF00196 Bacterial regulatory proteins, luxR family NMQ03_16250 PF00072 Response regulator receiver domain NMQ03_16255 PF00072 Response regulator receiver domain NMQ03_16255 PF00486 Transcriptional regulatory protein, C terminal NMQ03_16275 PF04234 CopC domain NMQ03_16285 PF04239 Protein of unknown function (DUF421) NMQ03_16295 PF10011 Predicted membrane protein (DUF2254) NMQ03_16315 PF00912 Transglycosylase NMQ03_16315 PF00905 Penicillin binding protein transpeptidase domain NMQ03_16320 PF01494 FAD binding domain NMQ03_16335 PF09335 SNARE associated Golgi protein NMQ03_16360 PF00282 Pyridoxal-dependent decarboxylase conserved domain NMQ03_16365 PF01757 Acyltransferase family NMQ03_16385 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NMQ03_16395 PF01380 SIS domain NMQ03_16400 PF16363 GDP-mannose 4,6 dehydratase NMQ03_16420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NMQ03_16420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NMQ03_16420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NMQ03_16445 PF13439 Glycosyltransferase Family 4 NMQ03_16450 PF03808 Glycosyl transferase WecB/TagA/CpsF family NMQ03_16455 PF16363 GDP-mannose 4,6 dehydratase NMQ03_16460 PF01370 NAD dependent epimerase/dehydratase family NMQ03_16465 PF13614 AAA domain NMQ03_16470 PF02397 Bacterial sugar transferase NMQ03_16490 PF00483 Nucleotidyl transferase NMQ03_16500 PF13614 AAA domain NMQ03_16520 PF00378 Enoyl-CoA hydratase/isomerase NMQ03_16525 PF00970 Oxidoreductase FAD-binding domain NMQ03_16525 PF00111 2Fe-2S iron-sulfur cluster binding domain NMQ03_16525 PF00175 Oxidoreductase NAD-binding domain NMQ03_16530 PF01883 Iron-sulfur cluster assembly protein NMQ03_16535 PF05138 Phenylacetic acid catabolic protein NMQ03_16540 PF06243 Phenylacetic acid degradation B NMQ03_16545 PF05138 Phenylacetic acid catabolic protein NMQ03_16555 PF00230 Major intrinsic protein NMQ03_16565 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_16565 PF13823 Alcohol dehydrogenase GroES-associated NMQ03_16565 PF00107 Zinc-binding dehydrogenase NMQ03_16570 PF00668 Condensation domain NMQ03_16570 PF00391 PEP-utilising enzyme, mobile domain NMQ03_16570 PF13193 AMP-binding enzyme C-terminal domain NMQ03_16570 PF00501 AMP-binding enzyme NMQ03_16570 PF00550 Phosphopantetheine attachment site NMQ03_16570 PF08241 Methyltransferase domain NMQ03_16570 PF00975 Thioesterase domain NMQ03_16590 PF00248 Aldo/keto reductase family NMQ03_16595 PF00248 Aldo/keto reductase family NMQ03_16600 PF00106 short chain dehydrogenase NMQ03_16615 PF01451 Low molecular weight phosphotyrosine protein phosphatase NMQ03_16625 PF01022 Bacterial regulatory protein, arsR family NMQ03_16630 PF00557 Metallopeptidase family M24 NMQ03_16640 PF00583 Acetyltransferase (GNAT) family NMQ03_16655 PF03649 Uncharacterised protein family (UPF0014) NMQ03_16660 PF04264 YceI-like domain NMQ03_16675 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NMQ03_16680 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NMQ03_16700 PF02583 Metal-sensitive transcriptional repressor NMQ03_16705 PF11127 Protein of unknown function (DUF2892) NMQ03_16705 PF00581 Rhodanese-like domain NMQ03_16710 PF01925 Sulfite exporter TauE/SafE NMQ03_16720 PF00581 Rhodanese-like domain NMQ03_16725 PF00085 Thioredoxin NMQ03_16730 PF00753 Metallo-beta-lactamase superfamily NMQ03_16735 PF07690 Major Facilitator Superfamily NMQ03_16750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMQ03_16750 PF00364 Biotin-requiring enzyme NMQ03_16750 PF02817 e3 binding domain NMQ03_16755 PF00364 Biotin-requiring enzyme NMQ03_16755 PF02779 Transketolase, pyrimidine binding domain NMQ03_16755 PF02780 Transketolase, C-terminal domain NMQ03_16760 PF00676 Dehydrogenase E1 component NMQ03_16765 PF00501 AMP-binding enzyme NMQ03_16765 PF13193 AMP-binding enzyme C-terminal domain NMQ03_16770 PF05139 Erythromycin esterase NMQ03_16770 PF00156 Phosphoribosyl transferase domain NMQ03_16775 PF05139 Erythromycin esterase NMQ03_16775 PF00156 Phosphoribosyl transferase domain NMQ03_16780 PF01738 Dienelactone hydrolase family NMQ03_16780 PF00156 Phosphoribosyl transferase domain NMQ03_16800 PF05506 Domain of unknown function (DUF756) NMQ03_16800 PF04185 Phosphoesterase family NMQ03_16805 PF08031 Berberine and berberine like NMQ03_16805 PF01565 FAD binding domain NMQ03_16810 PF04107 Glutamate-cysteine ligase family 2(GCS2) NMQ03_16835 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NMQ03_16840 PF00115 Cytochrome C and Quinol oxidase polypeptide I NMQ03_16845 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_16845 PF13823 Alcohol dehydrogenase GroES-associated NMQ03_16845 PF00107 Zinc-binding dehydrogenase NMQ03_16860 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_16865 PF08402 TOBE domain NMQ03_16865 PF00005 ABC transporter NMQ03_16875 PF06965 Na+/H+ antiporter 1 NMQ03_16900 PF00403 Heavy-metal-associated domain NMQ03_16920 PF01451 Low molecular weight phosphotyrosine protein phosphatase NMQ03_16925 PF03816 Cell envelope-related transcriptional attenuator domain NMQ03_16935 PF00300 Histidine phosphatase superfamily (branch 1) NMQ03_16940 PF01256 Carbohydrate kinase NMQ03_16945 PF00011 Hsp20/alpha crystallin family NMQ03_16950 PF01494 FAD binding domain NMQ03_16960 PF00326 Prolyl oligopeptidase family NMQ03_16960 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NMQ03_16980 PF00871 Acetokinase family NMQ03_17000 PF00171 Aldehyde dehydrogenase family NMQ03_17005 PF13378 Enolase C-terminal domain-like NMQ03_17005 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_17010 PF00392 Bacterial regulatory proteins, gntR family NMQ03_17010 PF07729 FCD domain NMQ03_17020 PF07690 Major Facilitator Superfamily NMQ03_17025 PF07085 DRTGG domain NMQ03_17025 PF01515 Phosphate acetyl/butaryl transferase NMQ03_17030 PF03061 Thioesterase superfamily NMQ03_17035 PF14535 AMP-binding enzyme C-terminal domain NMQ03_17035 PF00501 AMP-binding enzyme NMQ03_17045 PF13180 PDZ domain NMQ03_17060 PF01575 MaoC like domain NMQ03_17060 PF00171 Aldehyde dehydrogenase family NMQ03_17065 PF03061 Thioesterase superfamily NMQ03_17075 PF02983 Alpha-lytic protease prodomain NMQ03_17075 PF00089 Trypsin NMQ03_17080 PF13350 Tyrosine phosphatase family NMQ03_17085 PF13472 GDSL-like Lipase/Acylhydrolase family NMQ03_17100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMQ03_17100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMQ03_17105 PF00378 Enoyl-CoA hydratase/isomerase NMQ03_17110 PF02803 Thiolase, C-terminal domain NMQ03_17110 PF00108 Thiolase, N-terminal domain NMQ03_17125 PF00817 impB/mucB/samB family NMQ03_17125 PF11799 impB/mucB/samB family C-terminal domain NMQ03_17130 PF01738 Dienelactone hydrolase family NMQ03_17135 PF00324 Amino acid permease NMQ03_17140 PF02517 CPBP intramembrane metalloprotease NMQ03_17150 PF00378 Enoyl-CoA hydratase/isomerase NMQ03_17155 PF00501 AMP-binding enzyme NMQ03_17155 PF13193 AMP-binding enzyme C-terminal domain NMQ03_17160 PF01040 UbiA prenyltransferase family NMQ03_17185 PF00350 Dynamin family NMQ03_17205 PF01578 Cytochrome C assembly protein NMQ03_17215 PF02683 Cytochrome C biogenesis protein transmembrane region NMQ03_17220 PF00578 AhpC/TSA family NMQ03_17225 PF00300 Histidine phosphatase superfamily (branch 1) NMQ03_17230 PF04264 YceI-like domain NMQ03_17240 PF06971 Putative DNA-binding protein N-terminus NMQ03_17240 PF02629 CoA binding domain NMQ03_17260 PF12728 Helix-turn-helix domain NMQ03_17265 PF00793 DAHP synthetase I family NMQ03_17270 PF05448 Acetyl xylan esterase (AXE1) NMQ03_17275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMQ03_17275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMQ03_17280 PF00596 Class II Aldolase and Adducin N-terminal domain NMQ03_17285 PF01261 Xylose isomerase-like TIM barrel NMQ03_17290 PF05336 L-rhamnose mutarotase NMQ03_17295 PF00356 Bacterial regulatory proteins, lacI family NMQ03_17310 PF09224 Domain of unknown function (DUF1961) NMQ03_17320 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17325 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17330 PF01547 Bacterial extracellular solute-binding protein NMQ03_17335 PF04854 Protein of unknown function, DUF624 NMQ03_17345 PF07690 Major Facilitator Superfamily NMQ03_17355 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17360 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17370 PF02449 Beta-galactosidase NMQ03_17370 PF08533 Beta-galactosidase C-terminal domain NMQ03_17370 PF08532 Beta-galactosidase trimerisation domain NMQ03_17385 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17390 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17415 PF00171 Aldehyde dehydrogenase family NMQ03_17420 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_17420 PF13378 Enolase C-terminal domain-like NMQ03_17425 PF00701 Dihydrodipicolinate synthetase family NMQ03_17435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_17435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_17440 PF00356 Bacterial regulatory proteins, lacI family NMQ03_17450 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NMQ03_17455 PF14310 Fibronectin type III-like domain NMQ03_17455 PF00933 Glycosyl hydrolase family 3 N terminal domain NMQ03_17455 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMQ03_17455 PF07691 PA14 domain NMQ03_17460 PF07729 FCD domain NMQ03_17460 PF00392 Bacterial regulatory proteins, gntR family NMQ03_17465 PF01070 FMN-dependent dehydrogenase NMQ03_17470 PF01022 Bacterial regulatory protein, arsR family NMQ03_17475 PF00850 Histone deacetylase domain NMQ03_17480 PF02386 Cation transport protein NMQ03_17485 PF02080 TrkA-C domain NMQ03_17485 PF02254 TrkA-N domain NMQ03_17490 PF14748 Pyrroline-5-carboxylate reductase dimerisation NMQ03_17490 PF03807 NADP oxidoreductase coenzyme F420-dependent NMQ03_17495 PF02541 Ppx/GppA phosphatase family NMQ03_17505 PF01751 Toprim domain NMQ03_17505 PF13368 Topoisomerase C-terminal repeat NMQ03_17505 PF01131 DNA topoisomerase NMQ03_17510 PF05175 Methyltransferase small domain NMQ03_17525 PF12368 Rhodanase C-terminal NMQ03_17525 PF17773 UPF0176 acylphosphatase like domain NMQ03_17535 PF09369 Domain of unknown function (DUF1998) NMQ03_17535 PF00271 Helicase conserved C-terminal domain NMQ03_17535 PF00270 DEAD/DEAH box helicase NMQ03_17565 PF00437 Type II/IV secretion system protein NMQ03_17585 PF00293 NUDIX domain NMQ03_17590 PF00633 Helix-hairpin-helix motif NMQ03_17590 PF00730 HhH-GPD superfamily base excision DNA repair protein NMQ03_17590 PF10576 Iron-sulfur binding domain of endonuclease III NMQ03_17600 PF16177 Acetyl-coenzyme A synthetase N-terminus NMQ03_17600 PF00501 AMP-binding enzyme NMQ03_17600 PF13193 AMP-binding enzyme C-terminal domain NMQ03_17605 PF00455 DeoR C terminal sensor domain NMQ03_17605 PF08220 DeoR-like helix-turn-helix domain NMQ03_17610 PF00356 Bacterial regulatory proteins, lacI family NMQ03_17615 PF08533 Beta-galactosidase C-terminal domain NMQ03_17615 PF02449 Beta-galactosidase NMQ03_17615 PF08532 Beta-galactosidase trimerisation domain NMQ03_17620 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17625 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17630 PF01547 Bacterial extracellular solute-binding protein NMQ03_17640 PF01220 Dehydroquinase class II NMQ03_17645 PF02674 Colicin V production protein NMQ03_17650 PF00027 Cyclic nucleotide-binding domain NMQ03_17650 PF13545 Crp-like helix-turn-helix domain NMQ03_17655 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NMQ03_17665 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_17675 PF00356 Bacterial regulatory proteins, lacI family NMQ03_17695 PF00912 Transglycosylase NMQ03_17695 PF00905 Penicillin binding protein transpeptidase domain NMQ03_17700 PF00149 Calcineurin-like phosphoesterase NMQ03_17705 PF00005 ABC transporter NMQ03_17705 PF00664 ABC transporter transmembrane region NMQ03_17710 PF00664 ABC transporter transmembrane region NMQ03_17710 PF00005 ABC transporter NMQ03_17730 PF01259 SAICAR synthetase NMQ03_17735 PF02844 Phosphoribosylglycinamide synthetase, N domain NMQ03_17735 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NMQ03_17735 PF02843 Phosphoribosylglycinamide synthetase, C domain NMQ03_17755 PF00106 short chain dehydrogenase NMQ03_17760 PF01177 Asp/Glu/Hydantoin racemase NMQ03_17765 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NMQ03_17775 PF12804 MobA-like NTP transferase domain NMQ03_17795 PF00248 Aldo/keto reductase family NMQ03_17800 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NMQ03_17800 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NMQ03_17810 PF02625 XdhC and CoxI family NMQ03_17810 PF13478 XdhC Rossmann domain NMQ03_17815 PF00860 Permease family NMQ03_17820 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMQ03_17825 PF01979 Amidohydrolase family NMQ03_17830 PF04679 ATP dependent DNA ligase C terminal region NMQ03_17830 PF01068 ATP dependent DNA ligase domain NMQ03_17830 PF13298 DNA polymerase Ligase (LigD) NMQ03_17845 PF01014 Uricase NMQ03_17850 PF00860 Permease family NMQ03_17855 PF01614 Bacterial transcriptional regulator NMQ03_17855 PF09339 IclR helix-turn-helix domain NMQ03_17860 PF00390 Malic enzyme, N-terminal domain NMQ03_17860 PF03949 Malic enzyme, NAD binding domain NMQ03_17865 PF01274 Malate synthase NMQ03_17875 PF05899 Protein of unknown function (DUF861) NMQ03_17875 PF07883 Cupin domain NMQ03_17880 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_17880 PF13823 Alcohol dehydrogenase GroES-associated NMQ03_17880 PF00107 Zinc-binding dehydrogenase NMQ03_17890 PF13419 Haloacid dehalogenase-like hydrolase NMQ03_17900 PF00723 Glycosyl hydrolases family 15 NMQ03_17915 PF00232 Glycosyl hydrolase family 1 NMQ03_17925 PF00684 DnaJ central domain NMQ03_17925 PF01556 DnaJ C terminal domain NMQ03_17925 PF00226 DnaJ domain NMQ03_17930 PF00011 Hsp20/alpha crystallin family NMQ03_17935 PF13411 MerR HTH family regulatory protein NMQ03_17945 PF00082 Subtilase family NMQ03_17945 PF05922 Peptidase inhibitor I9 NMQ03_17950 PF01370 NAD dependent epimerase/dehydratase family NMQ03_17965 PF00072 Response regulator receiver domain NMQ03_17965 PF00486 Transcriptional regulatory protein, C terminal NMQ03_17970 PF00561 alpha/beta hydrolase fold NMQ03_17975 PF01022 Bacterial regulatory protein, arsR family NMQ03_17980 PF01545 Cation efflux family NMQ03_17980 PF16916 Dimerisation domain of Zinc Transporter NMQ03_17985 PF00487 Fatty acid desaturase NMQ03_17990 PF00970 Oxidoreductase FAD-binding domain NMQ03_17990 PF00175 Oxidoreductase NAD-binding domain NMQ03_17990 PF00111 2Fe-2S iron-sulfur cluster binding domain NMQ03_17995 PF00296 Luciferase-like monooxygenase NMQ03_18000 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NMQ03_18005 PF01266 FAD dependent oxidoreductase NMQ03_18010 PF02656 Domain of unknown function (DUF202) NMQ03_18015 PF02656 Domain of unknown function (DUF202) NMQ03_18025 PF10944 Protein of unknown function (DUF2630) NMQ03_18030 PF00795 Carbon-nitrogen hydrolase NMQ03_18045 PF00905 Penicillin binding protein transpeptidase domain NMQ03_18045 PF00912 Transglycosylase NMQ03_18095 PF03060 Nitronate monooxygenase NMQ03_18100 PF00107 Zinc-binding dehydrogenase NMQ03_18100 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_18105 PF00107 Zinc-binding dehydrogenase NMQ03_18105 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_18130 PF07690 Major Facilitator Superfamily NMQ03_18135 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) NMQ03_18140 PF00920 Dehydratase family NMQ03_18150 PF01546 Peptidase family M20/M25/M40 NMQ03_18150 PF07687 Peptidase dimerisation domain NMQ03_18155 PF01522 Polysaccharide deacetylase NMQ03_18165 PF17853 GGDEF-like domain NMQ03_18165 PF07905 Purine catabolism regulatory protein-like family NMQ03_18165 PF13556 PucR C-terminal helix-turn-helix domain NMQ03_18180 PF01321 Creatinase/Prolidase N-terminal domain NMQ03_18180 PF00557 Metallopeptidase family M24 NMQ03_18185 PF08946 Osmosensory transporter coiled coil NMQ03_18185 PF00083 Sugar (and other) transporter NMQ03_18215 PF01022 Bacterial regulatory protein, arsR family NMQ03_18220 PF00107 Zinc-binding dehydrogenase NMQ03_18220 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_18230 PF00990 Diguanylate cyclase, GGDEF domain NMQ03_18230 PF00563 EAL domain NMQ03_18230 PF13426 PAS domain NMQ03_18265 PF00583 Acetyltransferase (GNAT) family NMQ03_18270 PF03364 Polyketide cyclase / dehydrase and lipid transport NMQ03_18275 PF02374 Anion-transporting ATPase NMQ03_18295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_18295 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_18295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_18300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_18300 PF03466 LysR substrate binding domain NMQ03_18305 PF02515 CoA-transferase family III NMQ03_18310 PF03061 Thioesterase superfamily NMQ03_18315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_18315 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_18315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_18325 PF02803 Thiolase, C-terminal domain NMQ03_18325 PF00108 Thiolase, N-terminal domain NMQ03_18330 PF01575 MaoC like domain NMQ03_18335 PF00083 Sugar (and other) transporter NMQ03_18335 PF07690 Major Facilitator Superfamily NMQ03_18345 PF00664 ABC transporter transmembrane region NMQ03_18345 PF00005 ABC transporter NMQ03_18350 PF00005 ABC transporter NMQ03_18350 PF00664 ABC transporter transmembrane region NMQ03_18355 PF07690 Major Facilitator Superfamily NMQ03_18365 PF00141 Peroxidase NMQ03_18370 PF00360 Phytochrome region NMQ03_18370 PF08446 PAS fold NMQ03_18370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMQ03_18370 PF01590 GAF domain NMQ03_18370 PF00512 His Kinase A (phospho-acceptor) domain NMQ03_18380 PF03992 Antibiotic biosynthesis monooxygenase NMQ03_18390 PF00501 AMP-binding enzyme NMQ03_18390 PF13193 AMP-binding enzyme C-terminal domain NMQ03_18395 PF00072 Response regulator receiver domain NMQ03_18395 PF00196 Bacterial regulatory proteins, luxR family NMQ03_18400 PF07730 Histidine kinase NMQ03_18410 PF12704 MacB-like periplasmic core domain NMQ03_18410 PF02687 FtsX-like permease family NMQ03_18410 PF00005 ABC transporter NMQ03_18425 PF03358 NADPH-dependent FMN reductase NMQ03_18440 PF01522 Polysaccharide deacetylase NMQ03_18445 PF03364 Polyketide cyclase / dehydrase and lipid transport NMQ03_18460 PF00155 Aminotransferase class I and II NMQ03_18485 PF13291 ACT domain NMQ03_18485 PF00291 Pyridoxal-phosphate dependent enzyme NMQ03_18550 PF01546 Peptidase family M20/M25/M40 NMQ03_18550 PF07687 Peptidase dimerisation domain NMQ03_18555 PF00083 Sugar (and other) transporter NMQ03_18560 PF00753 Metallo-beta-lactamase superfamily NMQ03_18570 PF01261 Xylose isomerase-like TIM barrel NMQ03_18575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMQ03_18575 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMQ03_18580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMQ03_18580 PF00205 Thiamine pyrophosphate enzyme, central domain NMQ03_18580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMQ03_18585 PF02595 Glycerate kinase family NMQ03_18590 PF01979 Amidohydrolase family NMQ03_18595 PF00072 Response regulator receiver domain NMQ03_18595 PF00486 Transcriptional regulatory protein, C terminal NMQ03_18600 PF00578 AhpC/TSA family NMQ03_18625 PF00072 Response regulator receiver domain NMQ03_18625 PF00486 Transcriptional regulatory protein, C terminal NMQ03_18635 PF01740 STAS domain NMQ03_18650 PF00576 HIUase/Transthyretin family NMQ03_18655 PF09339 IclR helix-turn-helix domain NMQ03_18655 PF01614 Bacterial transcriptional regulator NMQ03_18660 PF02028 BCCT, betaine/carnitine/choline family transporter NMQ03_18670 PF07729 FCD domain NMQ03_18670 PF00392 Bacterial regulatory proteins, gntR family NMQ03_18675 PF00551 Formyl transferase NMQ03_18680 PF01571 Aminomethyltransferase folate-binding domain NMQ03_18680 PF08669 Glycine cleavage T-protein C-terminal barrel domain NMQ03_18680 PF16350 FAD dependent oxidoreductase central domain NMQ03_18680 PF01266 FAD dependent oxidoreductase NMQ03_18685 PF04961 Formiminotransferase-cyclodeaminase NMQ03_18690 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NMQ03_18690 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NMQ03_18700 PF00083 Sugar (and other) transporter NMQ03_18705 PF01266 FAD dependent oxidoreductase NMQ03_18705 PF16350 FAD dependent oxidoreductase central domain NMQ03_18705 PF01571 Aminomethyltransferase folate-binding domain NMQ03_18705 PF08669 Glycine cleavage T-protein C-terminal barrel domain NMQ03_18720 PF01568 Molydopterin dinucleotide binding domain NMQ03_18720 PF00384 Molybdopterin oxidoreductase NMQ03_18730 PF00107 Zinc-binding dehydrogenase NMQ03_18730 PF08240 Alcohol dehydrogenase GroES-like domain NMQ03_18740 PF00156 Phosphoribosyl transferase domain NMQ03_18745 PF00586 AIR synthase related protein, N-terminal domain NMQ03_18745 PF02769 AIR synthase related protein, C-terminal domain NMQ03_18755 PF12146 Serine aminopeptidase, S33 NMQ03_18775 PF03459 TOBE domain NMQ03_18775 PF00005 ABC transporter NMQ03_18780 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_18790 PF03459 TOBE domain NMQ03_18805 PF03733 Inner membrane component domain NMQ03_18810 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMQ03_18815 PF05962 HutD NMQ03_18820 PF00893 Small Multidrug Resistance protein NMQ03_18825 PF00893 Small Multidrug Resistance protein NMQ03_18835 PF00248 Aldo/keto reductase family NMQ03_18850 PF00271 Helicase conserved C-terminal domain NMQ03_18850 PF00270 DEAD/DEAH box helicase NMQ03_18855 PF13847 Methyltransferase domain NMQ03_18860 PF07690 Major Facilitator Superfamily NMQ03_18865 PF07690 Major Facilitator Superfamily NMQ03_18875 PF02390 Putative methyltransferase NMQ03_18905 PF04542 Sigma-70 region 2 NMQ03_18905 PF04545 Sigma-70, region 4 NMQ03_18945 PF00909 Ammonium Transporter Family NMQ03_18950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_18950 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_18975 PF01179 Copper amine oxidase, enzyme domain NMQ03_18975 PF02728 Copper amine oxidase, N3 domain NMQ03_18980 PF00440 Bacterial regulatory proteins, tetR family NMQ03_18980 PF13977 BetI-type transcriptional repressor, C-terminal NMQ03_19005 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NMQ03_19005 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NMQ03_19010 PF02293 AmiS/UreI family transporter NMQ03_19020 PF01593 Flavin containing amine oxidoreductase NMQ03_19030 PF13977 BetI-type transcriptional repressor, C-terminal NMQ03_19030 PF00440 Bacterial regulatory proteins, tetR family NMQ03_19035 PF00551 Formyl transferase NMQ03_19040 PF03313 Serine dehydratase alpha chain NMQ03_19040 PF03315 Serine dehydratase beta chain NMQ03_19045 PF04268 Sarcosine oxidase, gamma subunit family NMQ03_19050 PF08669 Glycine cleavage T-protein C-terminal barrel domain NMQ03_19050 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_19050 PF17806 Sarcosine oxidase A3 domain NMQ03_19050 PF01571 Aminomethyltransferase folate-binding domain NMQ03_19055 PF04267 Sarcosine oxidase, delta subunit family NMQ03_19060 PF01266 FAD dependent oxidoreductase NMQ03_19065 PF00464 Serine hydroxymethyltransferase NMQ03_19070 PF07729 FCD domain NMQ03_19070 PF00392 Bacterial regulatory proteins, gntR family NMQ03_19075 PF00180 Isocitrate/isopropylmalate dehydrogenase NMQ03_19080 PF00128 Alpha amylase, catalytic domain NMQ03_19085 PF01817 Chorismate mutase type II NMQ03_19085 PF00800 Prephenate dehydratase NMQ03_19090 PF01494 FAD binding domain NMQ03_19090 PF07976 Phenol hydroxylase, C-terminal dimerisation domain NMQ03_19095 PF03737 Aldolase/RraA NMQ03_19105 PF00171 Aldehyde dehydrogenase family NMQ03_19110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMQ03_19115 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMQ03_19120 PF03328 HpcH/HpaI aldolase/citrate lyase family NMQ03_19125 PF00171 Aldehyde dehydrogenase family NMQ03_19130 PF00171 Aldehyde dehydrogenase family NMQ03_19140 PF13411 MerR HTH family regulatory protein NMQ03_19145 PF00226 DnaJ domain NMQ03_19145 PF01556 DnaJ C terminal domain NMQ03_19145 PF00684 DnaJ central domain NMQ03_19150 PF01025 GrpE NMQ03_19155 PF00012 Hsp70 protein NMQ03_19160 PF01022 Bacterial regulatory protein, arsR family NMQ03_19165 PF07690 Major Facilitator Superfamily NMQ03_19175 PF13305 Tetracyclin repressor-like, C-terminal domain NMQ03_19175 PF00440 Bacterial regulatory proteins, tetR family NMQ03_19185 PF03176 MMPL family NMQ03_19195 PF08241 Methyltransferase domain NMQ03_19200 PF01810 LysE type translocator NMQ03_19205 PF01451 Low molecular weight phosphotyrosine protein phosphatase NMQ03_19215 PF00117 Glutamine amidotransferase class-I NMQ03_19215 PF00425 chorismate binding enzyme NMQ03_19215 PF04715 Anthranilate synthase component I, N terminal region NMQ03_19220 PF07690 Major Facilitator Superfamily NMQ03_19225 PF13091 PLD-like domain NMQ03_19225 PF13396 Phospholipase_D-nuclease N-terminal NMQ03_19260 PF00581 Rhodanese-like domain NMQ03_19265 PF01053 Cys/Met metabolism PLP-dependent enzyme NMQ03_19275 PF04107 Glutamate-cysteine ligase family 2(GCS2) NMQ03_19280 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NMQ03_19290 PF00005 ABC transporter NMQ03_19295 PF09819 ABC-type cobalt transport system, permease component NMQ03_19300 PF03928 Haem-degrading NMQ03_19325 PF03334 Na+/H+ antiporter subunit NMQ03_19330 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NMQ03_19340 PF00361 Proton-conducting membrane transporter NMQ03_19345 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NMQ03_19350 PF13244 Domain of unknown function (DUF4040) NMQ03_19350 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NMQ03_19350 PF00361 Proton-conducting membrane transporter NMQ03_19350 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NMQ03_19365 PF00999 Sodium/hydrogen exchanger family NMQ03_19370 PF00692 dUTPase NMQ03_19400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_19400 PF03466 LysR substrate binding domain NMQ03_19410 PF00171 Aldehyde dehydrogenase family NMQ03_19415 PF13520 Amino acid permease NMQ03_19420 PF03466 LysR substrate binding domain NMQ03_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_19425 PF02261 Aspartate decarboxylase NMQ03_19435 PF01266 FAD dependent oxidoreductase NMQ03_19440 PF14031 Putative serine dehydratase domain NMQ03_19445 PF07690 Major Facilitator Superfamily NMQ03_19450 PF00296 Luciferase-like monooxygenase NMQ03_19455 PF00248 Aldo/keto reductase family NMQ03_19465 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMQ03_19475 PF07690 Major Facilitator Superfamily NMQ03_19480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_19480 PF03466 LysR substrate binding domain NMQ03_19485 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMQ03_19485 PF13378 Enolase C-terminal domain-like NMQ03_19490 PF02426 Muconolactone delta-isomerase NMQ03_19500 PF00106 short chain dehydrogenase NMQ03_19505 PF00970 Oxidoreductase FAD-binding domain NMQ03_19505 PF00111 2Fe-2S iron-sulfur cluster binding domain NMQ03_19505 PF00175 Oxidoreductase NAD-binding domain NMQ03_19510 PF00866 Ring hydroxylating beta subunit NMQ03_19515 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NMQ03_19515 PF00355 Rieske [2Fe-2S] domain NMQ03_19520 PF00775 Dioxygenase NMQ03_19520 PF04444 Catechol dioxygenase N terminus NMQ03_19540 PF00171 Aldehyde dehydrogenase family NMQ03_19545 PF05199 GMC oxidoreductase NMQ03_19545 PF00732 GMC oxidoreductase NMQ03_19560 PF00005 ABC transporter NMQ03_19565 PF02574 Homocysteine S-methyltransferase NMQ03_19565 PF02310 B12 binding domain NMQ03_19565 PF02965 Vitamin B12 dependent methionine synthase, activation domain NMQ03_19565 PF02607 B12 binding domain NMQ03_19565 PF00809 Pterin binding enzyme NMQ03_19625 PF12671 Putative amidase domain NMQ03_19635 PF02899 Phage integrase, N-terminal SAM-like domain NMQ03_19635 PF00589 Phage integrase family NMQ03_19640 PF02899 Phage integrase, N-terminal SAM-like domain NMQ03_19640 PF00589 Phage integrase family NMQ03_19655 PF12146 Serine aminopeptidase, S33 NMQ03_19670 PF07729 FCD domain NMQ03_19670 PF00392 Bacterial regulatory proteins, gntR family NMQ03_19675 PF00890 FAD binding domain NMQ03_19675 PF14537 Cytochrome c3 NMQ03_19680 PF07729 FCD domain NMQ03_19680 PF00392 Bacterial regulatory proteins, gntR family NMQ03_19685 PF04303 PrpF protein NMQ03_19690 PF00005 ABC transporter NMQ03_19690 PF08402 TOBE domain NMQ03_19710 PF03466 LysR substrate binding domain NMQ03_19710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMQ03_19715 PF04303 PrpF protein NMQ03_19720 PF00375 Sodium:dicarboxylate symporter family NMQ03_19725 PF00296 Luciferase-like monooxygenase NMQ03_19730 PF00296 Luciferase-like monooxygenase NMQ03_19740 PF00005 ABC transporter NMQ03_19745 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_19760 PF05872 Bacterial protein of unknown function (DUF853) NMQ03_19775 PF00578 AhpC/TSA family NMQ03_19775 PF17991 Thioredoxin like C-terminal domain NMQ03_19775 PF02683 Cytochrome C biogenesis protein transmembrane region NMQ03_19780 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) NMQ03_19780 PF05425 Copper resistance protein D NMQ03_19785 PF00216 Bacterial DNA-binding protein NMQ03_19805 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NMQ03_19805 PF02837 Glycosyl hydrolases family 2, sugar binding domain NMQ03_19805 PF02929 Beta galactosidase small chain NMQ03_19805 PF16353 Domain of unknown function(DUF4981) NMQ03_19810 PF00356 Bacterial regulatory proteins, lacI family NMQ03_19830 PF00253 Ribosomal protein S14p/S29e NMQ03_19835 PF00471 Ribosomal protein L33 NMQ03_19840 PF00830 Ribosomal L28 family NMQ03_19845 PF00970 Oxidoreductase FAD-binding domain NMQ03_19845 PF00042 Globin NMQ03_19845 PF00175 Oxidoreductase NAD-binding domain NMQ03_19880 PF08021 Siderophore-interacting FAD-binding domain NMQ03_19880 PF04954 Siderophore-interacting protein NMQ03_19885 PF00005 ABC transporter NMQ03_19890 PF01032 FecCD transport family NMQ03_19895 PF01032 FecCD transport family NMQ03_19935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMQ03_19935 PF02770 Acyl-CoA dehydrogenase, middle domain NMQ03_19935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMQ03_19955 PF00248 Aldo/keto reductase family NMQ03_19960 PF05368 NmrA-like family NMQ03_20000 PF00565 Staphylococcal nuclease homologue NMQ03_20005 PF01569 PAP2 superfamily NMQ03_20010 PF09335 SNARE associated Golgi protein NMQ03_20015 PF00392 Bacterial regulatory proteins, gntR family NMQ03_20015 PF07729 FCD domain NMQ03_20025 PF00206 Lyase NMQ03_20025 PF10415 Fumarase C C-terminus NMQ03_20030 PF00324 Amino acid permease NMQ03_20040 PF00056 lactate/malate dehydrogenase, NAD binding domain NMQ03_20040 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NMQ03_20060 PF00749 tRNA synthetases class I (E and Q), catalytic domain NMQ03_20075 PF01037 Lrp/AsnC ligand binding domain NMQ03_20080 PF01810 LysE type translocator NMQ03_20100 PF00390 Malic enzyme, N-terminal domain NMQ03_20100 PF03949 Malic enzyme, NAD binding domain NMQ03_20105 PF17925 Tetracyclin repressor-like, C-terminal domain NMQ03_20105 PF00440 Bacterial regulatory proteins, tetR family NMQ03_20110 PF07690 Major Facilitator Superfamily NMQ03_20115 PF03737 Aldolase/RraA NMQ03_20120 PF07690 Major Facilitator Superfamily NMQ03_20125 PF00083 Sugar (and other) transporter NMQ03_20130 PF07690 Major Facilitator Superfamily NMQ03_20145 PF01232 Mannitol dehydrogenase Rossmann domain NMQ03_20145 PF08125 Mannitol dehydrogenase C-terminal domain NMQ03_20150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMQ03_20150 PF02378 Phosphotransferase system, EIIC NMQ03_20150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMQ03_20160 PF02896 PEP-utilising enzyme, TIM barrel domain NMQ03_20160 PF05524 PEP-utilising enzyme, N-terminal NMQ03_20160 PF00391 PEP-utilising enzyme, mobile domain NMQ03_20170 PF12697 Alpha/beta hydrolase family NMQ03_20180 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NMQ03_20180 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NMQ03_20185 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_20185 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_20195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NMQ03_20195 PF00005 ABC transporter NMQ03_20200 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_20200 PF12911 N-terminal TM domain of oligopeptide transport permease C NMQ03_20205 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_20215 PF03358 NADPH-dependent FMN reductase NMQ03_20225 PF00155 Aminotransferase class I and II NMQ03_20245 PF02817 e3 binding domain NMQ03_20245 PF00364 Biotin-requiring enzyme NMQ03_20245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMQ03_20250 PF02780 Transketolase, C-terminal domain NMQ03_20250 PF02779 Transketolase, pyrimidine binding domain NMQ03_20255 PF00676 Dehydrogenase E1 component NMQ03_20260 PF00155 Aminotransferase class I and II NMQ03_20285 PF08328 Adenylosuccinate lyase C-terminal NMQ03_20285 PF00206 Lyase NMQ03_20290 PF00300 Histidine phosphatase superfamily (branch 1) NMQ03_20290 PF00934 PE family NMQ03_20295 PF03793 PASTA domain NMQ03_20295 PF00069 Protein kinase domain NMQ03_20315 PF03061 Thioesterase superfamily NMQ03_20325 PF03459 TOBE domain NMQ03_20325 PF00005 ABC transporter NMQ03_20330 PF00528 Binding-protein-dependent transport system inner membrane component NMQ03_20335 PF01494 FAD binding domain NMQ03_20340 PF17932 Tetracyclin repressor-like, C-terminal domain NMQ03_20340 PF00440 Bacterial regulatory proteins, tetR family NMQ03_20345 PF01494 FAD binding domain NMQ03_20350 PF01614 Bacterial transcriptional regulator NMQ03_20350 PF09339 IclR helix-turn-helix domain NMQ03_20365 PF07690 Major Facilitator Superfamily NMQ03_20370 PF00392 Bacterial regulatory proteins, gntR family NMQ03_20370 PF07729 FCD domain NMQ03_20375 PF01177 Asp/Glu/Hydantoin racemase NMQ03_20380 PF01979 Amidohydrolase family NMQ03_20390 PF00781 Diacylglycerol kinase catalytic domain NMQ03_20395 PF02233 NAD(P) transhydrogenase beta subunit NMQ03_20400 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NMQ03_20405 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NMQ03_20405 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NMQ03_20410 PF00392 Bacterial regulatory proteins, gntR family NMQ03_20410 PF07729 FCD domain NMQ03_20415 PF04909 Amidohydrolase NMQ03_20420 PF03737 Aldolase/RraA NMQ03_20425 PF09339 IclR helix-turn-helix domain NMQ03_20425 PF01614 Bacterial transcriptional regulator NMQ03_20430 PF08501 Shikimate dehydrogenase substrate binding domain NMQ03_20435 PF00083 Sugar (and other) transporter NMQ03_20435 PF07690 Major Facilitator Superfamily NMQ03_20440 PF01614 Bacterial transcriptional regulator NMQ03_20440 PF09339 IclR helix-turn-helix domain NMQ03_20445 PF01144 Coenzyme A transferase NMQ03_20450 PF01144 Coenzyme A transferase NMQ03_20455 PF00108 Thiolase, N-terminal domain NMQ03_20455 PF02803 Thiolase, C-terminal domain NMQ03_20460 PF02627 Carboxymuconolactone decarboxylase family NMQ03_20465 PF00561 alpha/beta hydrolase fold NMQ03_20475 PF00775 Dioxygenase NMQ03_20480 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NMQ03_20480 PF00775 Dioxygenase NMQ03_20485 PF01261 Xylose isomerase-like TIM barrel NMQ03_20485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMQ03_20490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NMQ03_20490 PF08501 Shikimate dehydrogenase substrate binding domain NMQ03_20495 PF01614 Bacterial transcriptional regulator NMQ03_20495 PF09339 IclR helix-turn-helix domain NMQ03_20500 PF00083 Sugar (and other) transporter NMQ03_20500 PF07690 Major Facilitator Superfamily NMQ03_20505 PF01068 ATP dependent DNA ligase domain NMQ03_20505 PF04679 ATP dependent DNA ligase C terminal region NMQ03_20520 PF16657 Maltogenic Amylase, C-terminal domain NMQ03_20520 PF00128 Alpha amylase, catalytic domain NMQ03_20525 PF00155 Aminotransferase class I and II NMQ03_20540 PF01571 Aminomethyltransferase folate-binding domain NMQ03_20545 PF01571 Aminomethyltransferase folate-binding domain NMQ03_20550 PF04303 PrpF protein NMQ03_20555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMQ03_20560 PF00171 Aldehyde dehydrogenase family NMQ03_20565 PF02219 Methylenetetrahydrofolate reductase NMQ03_20570 PF01842 ACT domain NMQ03_20570 PF00551 Formyl transferase NMQ03_20575 PF01571 Aminomethyltransferase folate-binding domain NMQ03_20590 PF11862 Domain of unknown function (DUF3382) NMQ03_20590 PF02653 Branched-chain amino acid transport system / permease component NMQ03_20600 PF00005 ABC transporter NMQ03_20605 PF00005 ABC transporter NMQ03_20605 PF12399 Branched-chain amino acid ATP-binding cassette transporter NMQ03_20640 PF02583 Metal-sensitive transcriptional repressor NMQ03_20650 PF00403 Heavy-metal-associated domain NMQ03_20665 PF00892 EamA-like transporter family NMQ03_20690 PF07681 DoxX NMQ03_20700 PF00772 DnaB-like helicase N terminal domain NMQ03_20700 PF03796 DnaB-like helicase C terminal domain NMQ03_20715 PF03358 NADPH-dependent FMN reductase NMQ03_20720 PF02567 Phenazine biosynthesis-like protein NMQ03_20725 PF03948 Ribosomal protein L9, C-terminal domain NMQ03_20725 PF01281 Ribosomal protein L9, N-terminal domain NMQ03_20730 PF01084 Ribosomal protein S18 NMQ03_20735 PF00436 Single-strand binding protein family NMQ03_20740 PF01250 Ribosomal protein S6 NMQ03_20755 PF01943 Polysaccharide biosynthesis protein NMQ03_20765 PF02223 Thymidylate kinase NMQ03_20785 PF00535 Glycosyl transferase family 2 NMQ03_20795 PF00535 Glycosyl transferase family 2 NMQ03_20810 PF02397 Bacterial sugar transferase NMQ03_20815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMQ03_20815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMQ03_20820 PF16363 GDP-mannose 4,6 dehydratase NMQ03_20825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NMQ03_20840 PF01943 Polysaccharide biosynthesis protein NMQ03_20845 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NMQ03_20855 PF01757 Acyltransferase family NMQ03_20860 PF13614 AAA domain NMQ03_20860 PF02706 Chain length determinant protein NMQ03_20860 PF13807 G-rich domain on putative tyrosine kinase NMQ03_20890 PF02127 Aminopeptidase I zinc metalloprotease (M18) NMQ03_20895 PF00324 Amino acid permease NMQ03_20905 PF00005 ABC transporter NMQ03_20915 PF07690 Major Facilitator Superfamily NMQ03_20925 PF16326 ABC transporter C-terminal domain NMQ03_20925 PF12848 ABC transporter NMQ03_20925 PF00005 ABC transporter NMQ03_20930 PF00905 Penicillin binding protein transpeptidase domain NMQ03_20945 PF00300 Histidine phosphatase superfamily (branch 1) NMQ03_20950 PF01966 HD domain NMQ03_20950 PF01743 Poly A polymerase head domain NMQ03_20950 PF12627 Probable RNA and SrmB- binding site of polymerase A NMQ03_20955 PF00293 NUDIX domain NMQ03_20960 PF03023 Lipid II flippase MurJ NMQ03_20970 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMQ03_20975 PF00085 Thioredoxin NMQ03_20980 PF17762 HTH domain found in ParB protein NMQ03_20980 PF02195 ParB-like nuclease domain NMQ03_20985 PF13614 AAA domain NMQ03_20990 PF02527 rRNA small subunit methyltransferase G NMQ03_21000 PF02096 60Kd inner membrane protein NMQ03_21005 PF01809 Putative membrane protein insertion efficiency factor NMQ03_21010 PF00825 Ribonuclease P NMQ03_21015 PF00468 Ribosomal protein L34