locus-tag class description AFL94_00005 PF00308 Bacterial dnaA protein AFL94_00005 PF08299 Bacterial dnaA protein helix-turn-helix AFL94_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFL94_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFL94_00010 PF02767 DNA polymerase III beta subunit, central domain AFL94_00015 PF02463 RecF/RecN/SMC N terminal domain AFL94_00020 PF05258 Dna[CI] antecedent, DciA AFL94_00025 PF00204 DNA gyrase B AFL94_00025 PF00986 DNA gyrase B subunit, carboxyl terminus AFL94_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_00025 PF01751 Toprim domain AFL94_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A AFL94_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller AFL94_00035 PF12089 Transmembrane domain of unknown function (DUF3566) AFL94_00055 PF13439 Glycosyltransferase Family 4 AFL94_00055 PF00534 Glycosyl transferases group 1 AFL94_00060 PF01758 Sodium Bile acid symporter family AFL94_00075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFL94_00080 PF01694 Rhomboid family AFL94_00090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_00090 PF03466 LysR substrate binding domain AFL94_00095 PF00893 Small Multidrug Resistance protein AFL94_00100 PF06781 Cell division protein CrgA AFL94_00105 PF04203 Sortase domain AFL94_00115 PF00117 Glutamine amidotransferase class-I AFL94_00120 PF00069 Protein kinase domain AFL94_00120 PF03793 PASTA domain AFL94_00125 PF00069 Protein kinase domain AFL94_00130 PF00905 Penicillin binding protein transpeptidase domain AFL94_00135 PF01098 Cell cycle protein AFL94_00145 PF16697 Inner membrane component of T3SS, cytoplasmic domain AFL94_00170 PF00356 Bacterial regulatory proteins, lacI family AFL94_00175 PF01156 Inosine-uridine preferring nucleoside hydrolase AFL94_00180 PF01738 Dienelactone hydrolase family AFL94_00195 PF00378 Enoyl-CoA hydratase/isomerase AFL94_00205 PF00294 pfkB family carbohydrate kinase AFL94_00225 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFL94_00225 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFL94_00225 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFL94_00230 PF00083 Sugar (and other) transporter AFL94_00235 PF00860 Permease family AFL94_00240 PF02581 Thiamine monophosphate synthase AFL94_00240 PF03070 TENA/THI-4/PQQC family AFL94_00240 PF08543 Phosphomethylpyrimidine kinase AFL94_00245 PF02581 Thiamine monophosphate synthase AFL94_00250 PF02110 Hydroxyethylthiazole kinase family AFL94_00265 PF00171 Aldehyde dehydrogenase family AFL94_00270 PF00324 Amino acid permease AFL94_00275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_00275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_00275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_00275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_00290 PF13443 Cro/C1-type HTH DNA-binding domain AFL94_00295 PF00854 POT family AFL94_00300 PF01425 Amidase AFL94_00310 PF01842 ACT domain AFL94_00310 PF00800 Prephenate dehydratase AFL94_00315 PF00781 Diacylglycerol kinase catalytic domain AFL94_00320 PF02403 Seryl-tRNA synthetase N-terminal domain AFL94_00320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_00350 PF01470 Pyroglutamyl peptidase AFL94_00355 PF02646 RmuC family AFL94_00365 PF00719 Inorganic pyrophosphatase AFL94_00370 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AFL94_00380 PF09179 TilS substrate binding domain AFL94_00380 PF01171 PP-loop family AFL94_00390 PF17862 AAA+ lid domain AFL94_00390 PF01434 Peptidase family M41 AFL94_00390 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_00395 PF01227 GTP cyclohydrolase I AFL94_00400 PF00809 Pterin binding enzyme AFL94_00405 PF02152 Dihydroneopterin aldolase AFL94_00430 PF02569 Pantoate-beta-alanine ligase AFL94_00455 PF01381 Helix-turn-helix AFL94_00480 PF00106 short chain dehydrogenase AFL94_00485 PF05649 Peptidase family M13 AFL94_00485 PF01431 Peptidase family M13 AFL94_00490 PF00152 tRNA synthetases class II (D, K and N) AFL94_00490 PF01336 OB-fold nucleic acid binding domain AFL94_00495 PF11774 Lsr2 AFL94_00500 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_00500 PF02861 Clp amino terminal domain, pathogenicity island component AFL94_00500 PF07724 AAA domain (Cdc48 subfamily) AFL94_00500 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_00500 PF17871 AAA lid domain AFL94_00520 PF01965 DJ-1/PfpI family AFL94_00520 PF12833 Helix-turn-helix domain AFL94_00530 PF00583 Acetyltransferase (GNAT) family AFL94_00540 PF00730 HhH-GPD superfamily base excision DNA repair protein AFL94_00540 PF00633 Helix-hairpin-helix motif AFL94_00540 PF10576 Iron-sulfur binding domain of endonuclease III AFL94_00550 PF10635 DisA bacterial checkpoint controller linker region AFL94_00550 PF02457 DisA bacterial checkpoint controller nucleotide-binding AFL94_00550 PF00633 Helix-hairpin-helix motif AFL94_00555 PF06745 KaiC AFL94_00555 PF18073 Rubredoxin metal binding domain AFL94_00565 PF12849 PBP superfamily domain AFL94_00570 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_00575 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_00580 PF00005 ABC transporter AFL94_00595 PF01384 Phosphate transporter family AFL94_00645 PF00005 ABC transporter AFL94_00645 PF12848 ABC transporter AFL94_00645 PF16326 ABC transporter C-terminal domain AFL94_00650 PF01209 ubiE/COQ5 methyltransferase family AFL94_00670 PF00171 Aldehyde dehydrogenase family AFL94_00675 PF00107 Zinc-binding dehydrogenase AFL94_00675 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_00685 PF06441 Epoxide hydrolase N terminus AFL94_00705 PF01113 Dihydrodipicolinate reductase, N-terminus AFL94_00705 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain AFL94_00710 PF02583 Metal-sensitive transcriptional repressor AFL94_00715 PF00085 Thioredoxin AFL94_00730 PF00753 Metallo-beta-lactamase superfamily AFL94_00730 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFL94_00750 PF02913 FAD linked oxidases, C-terminal domain AFL94_00750 PF01565 FAD binding domain AFL94_00760 PF01475 Ferric uptake regulator family AFL94_00770 PF01370 NAD dependent epimerase/dehydratase family AFL94_00770 PF08338 Domain of unknown function (DUF1731) AFL94_00790 PF01565 FAD binding domain AFL94_00790 PF04030 D-arabinono-1,4-lactone oxidase AFL94_00825 PF02272 DHHA1 domain AFL94_00825 PF01411 tRNA synthetases class II (A) AFL94_00825 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_00845 PF01910 Thiamine-binding protein AFL94_00875 PF00860 Permease family AFL94_00880 PF00582 Universal stress protein family AFL94_00885 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AFL94_00885 PF00877 NlpC/P60 family AFL94_00925 PF00378 Enoyl-CoA hydratase/isomerase AFL94_00930 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_00930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_00940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_00940 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_00940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_00965 PF02540 NAD synthase AFL94_00975 PF00156 Phosphoribosyl transferase domain AFL94_00990 PF00005 ABC transporter AFL94_01000 PF13344 Haloacid dehalogenase-like hydrolase AFL94_01005 PF02527 rRNA small subunit methyltransferase G AFL94_01005 PF00588 SpoU rRNA Methylase family AFL94_01015 PF01116 Fructose-bisphosphate aldolase class-II AFL94_01025 PF00069 Protein kinase domain AFL94_01080 PF00486 Transcriptional regulatory protein, C terminal AFL94_01080 PF00072 Response regulator receiver domain AFL94_01085 PF18719 ArlS sensor domain AFL94_01085 PF00512 His Kinase A (phospho-acceptor) domain AFL94_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_01095 PF01037 Lrp/AsnC ligand binding domain AFL94_01100 PF00266 Aminotransferase class-V AFL94_01105 PF00324 Amino acid permease AFL94_01115 PF00265 Thymidine kinase AFL94_01120 PF02909 Tetracyclin repressor-like, C-terminal domain AFL94_01120 PF00440 Bacterial regulatory proteins, tetR family AFL94_01130 PF00909 Ammonium Transporter Family AFL94_01135 PF00543 Nitrogen regulatory protein P-II AFL94_01150 PF01546 Peptidase family M20/M25/M40 AFL94_01155 PF01266 FAD dependent oxidoreductase AFL94_01160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_01160 PF03466 LysR substrate binding domain AFL94_01170 PF00892 EamA-like transporter family AFL94_01185 PF00709 Adenylosuccinate synthetase AFL94_01195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_01195 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_01195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_01200 PF17862 AAA+ lid domain AFL94_01200 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_01200 PF06480 FtsH Extracellular AFL94_01200 PF01434 Peptidase family M41 AFL94_01220 PF01522 Polysaccharide deacetylase AFL94_01220 PF11738 Protein of unknown function (DUF3298) AFL94_01220 PF13739 Deacetylase PdaC AFL94_01235 PF05524 PEP-utilising enzyme, N-terminal AFL94_01235 PF02896 PEP-utilising enzyme, TIM barrel domain AFL94_01235 PF00391 PEP-utilising enzyme, mobile domain AFL94_01240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFL94_01240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFL94_01245 PF00294 pfkB family carbohydrate kinase AFL94_01250 PF00455 DeoR C terminal sensor domain AFL94_01250 PF08220 DeoR-like helix-turn-helix domain AFL94_01255 PF00457 Glycosyl hydrolases family 11 AFL94_01255 PF01522 Polysaccharide deacetylase AFL94_01255 PF03422 Carbohydrate binding module (family 6) AFL94_01260 PF01032 FecCD transport family AFL94_01265 PF01032 FecCD transport family AFL94_01270 PF01497 Periplasmic binding protein AFL94_01275 PF13380 CoA binding domain AFL94_01280 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_01285 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_01290 PF04545 Sigma-70, region 4 AFL94_01290 PF04542 Sigma-70 region 2 AFL94_01295 PF02805 Metal binding domain of Ada AFL94_01295 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFL94_01295 PF12833 Helix-turn-helix domain AFL94_01295 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFL94_01300 PF00141 Peroxidase AFL94_01305 PF01475 Ferric uptake regulator family AFL94_01310 PF02028 BCCT, betaine/carnitine/choline family transporter AFL94_01315 PF00501 AMP-binding enzyme AFL94_01315 PF16177 Acetyl-coenzyme A synthetase N-terminus AFL94_01315 PF13193 AMP-binding enzyme C-terminal domain AFL94_01320 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_01330 PF00005 ABC transporter AFL94_01340 PF00296 Luciferase-like monooxygenase AFL94_01365 PF04545 Sigma-70, region 4 AFL94_01365 PF04542 Sigma-70 region 2 AFL94_01370 PF05368 NmrA-like family AFL94_01375 PF01126 Heme oxygenase AFL94_01380 PF09383 NIL domain AFL94_01380 PF00005 ABC transporter AFL94_01385 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_01390 PF03180 NLPA lipoprotein AFL94_01395 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_01395 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_01395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_01400 PF00296 Luciferase-like monooxygenase AFL94_01405 PF13380 CoA binding domain AFL94_01410 PF04237 YjbR AFL94_01425 PF00149 Calcineurin-like phosphoesterase AFL94_01425 PF17936 Bacterial Ig domain AFL94_01425 PF02872 5'-nucleotidase, C-terminal domain AFL94_01465 PF03831 PhnA domain AFL94_01465 PF08274 PhnA Zinc-Ribbon AFL94_01480 PF02769 AIR synthase related protein, C-terminal domain AFL94_01480 PF00586 AIR synthase related protein, N-terminal domain AFL94_01480 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFL94_01490 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AFL94_01505 PF05958 tRNA (Uracil-5-)-methyltransferase AFL94_01510 PF00999 Sodium/hydrogen exchanger family AFL94_01525 PF04978 Protein of unknown function (DUF664) AFL94_01530 PF03600 Citrate transporter AFL94_01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_01535 PF00989 PAS fold AFL94_01535 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFL94_01535 PF17203 Single cache domain 3 AFL94_01540 PF00072 Response regulator receiver domain AFL94_01540 PF12431 Transcriptional regulator AFL94_01550 PF00696 Amino acid kinase family AFL94_01550 PF13840 ACT domain AFL94_01550 PF01842 ACT domain AFL94_01565 PF07690 Major Facilitator Superfamily AFL94_01585 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFL94_01605 PF00486 Transcriptional regulatory protein, C terminal AFL94_01605 PF00072 Response regulator receiver domain AFL94_01630 PF06912 Protein of unknown function (DUF1275) AFL94_01635 PF00324 Amino acid permease AFL94_01640 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_01655 PF00463 Isocitrate lyase family AFL94_01660 PF07690 Major Facilitator Superfamily AFL94_01665 PF07969 Amidohydrolase family AFL94_01675 PF01381 Helix-turn-helix AFL94_01680 PF00582 Universal stress protein family AFL94_01685 PF00392 Bacterial regulatory proteins, gntR family AFL94_01685 PF00155 Aminotransferase class I and II AFL94_01690 PF01168 Alanine racemase, N-terminal domain AFL94_01690 PF00842 Alanine racemase, C-terminal domain AFL94_01695 PF00202 Aminotransferase class-III AFL94_01705 PF13520 Amino acid permease AFL94_01715 PF07728 AAA domain (dynein-related subfamily) AFL94_01715 PF08406 CbbQ/NirQ/NorQ C-terminal AFL94_01715 PF12556 Cobaltochelatase CobS subunit N terminal AFL94_01720 PF09339 IclR helix-turn-helix domain AFL94_01720 PF01614 Bacterial transcriptional regulator AFL94_01725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_01725 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_01725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_01755 PF17871 AAA lid domain AFL94_01755 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_01755 PF02861 Clp amino terminal domain, pathogenicity island component AFL94_01755 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_01755 PF07724 AAA domain (Cdc48 subfamily) AFL94_01760 PF00072 Response regulator receiver domain AFL94_01760 PF00196 Bacterial regulatory proteins, luxR family AFL94_01765 PF07730 Histidine kinase AFL94_01770 PF00881 Nitroreductase family AFL94_01780 PF01266 FAD dependent oxidoreductase AFL94_01795 PF13438 Domain of unknown function (DUF4113) AFL94_01795 PF00817 impB/mucB/samB family AFL94_01795 PF11799 impB/mucB/samB family C-terminal domain AFL94_01800 PF00933 Glycosyl hydrolase family 3 N terminal domain AFL94_01805 PF06280 Fn3-like domain AFL94_01805 PF00746 LPXTG cell wall anchor motif AFL94_01805 PF02225 PA domain AFL94_01805 PF00082 Subtilase family AFL94_01815 PF08543 Phosphomethylpyrimidine kinase AFL94_01835 PF00005 ABC transporter AFL94_01845 PF01702 Queuine tRNA-ribosyltransferase AFL94_01860 PF07690 Major Facilitator Superfamily AFL94_01865 PF00106 short chain dehydrogenase AFL94_01875 PF00849 RNA pseudouridylate synthase AFL94_01880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_01880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFL94_01885 PF00271 Helicase conserved C-terminal domain AFL94_01885 PF08494 DEAD/H associated AFL94_01885 PF00270 DEAD/DEAH box helicase AFL94_01890 PF02590 Predicted SPOUT methyltransferase AFL94_01905 PF00491 Arginase family AFL94_01910 PF03616 Sodium/glutamate symporter AFL94_01915 PF01842 ACT domain AFL94_01915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_01915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFL94_01930 PF00005 ABC transporter AFL94_01955 PF02627 Carboxymuconolactone decarboxylase family AFL94_01965 PF10397 Adenylosuccinate lyase C-terminus AFL94_01965 PF00206 Lyase AFL94_01975 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AFL94_01975 PF00775 Dioxygenase AFL94_01980 PF01494 FAD binding domain AFL94_01985 PF03447 Homoserine dehydrogenase, NAD binding domain AFL94_01985 PF01958 Domain of unknown function DUF108 AFL94_01995 PF07690 Major Facilitator Superfamily AFL94_02000 PF00108 Thiolase, N-terminal domain AFL94_02000 PF02803 Thiolase, C-terminal domain AFL94_02005 PF01144 Coenzyme A transferase AFL94_02010 PF01144 Coenzyme A transferase AFL94_02015 PF01614 Bacterial transcriptional regulator AFL94_02015 PF09339 IclR helix-turn-helix domain AFL94_02040 PF03009 Glycerophosphoryl diester phosphodiesterase family AFL94_02045 PF01967 MoaC family AFL94_02045 PF00994 Probable molybdopterin binding domain AFL94_02050 PF01967 MoaC family AFL94_02055 PF00994 Probable molybdopterin binding domain AFL94_02055 PF03454 MoeA C-terminal region (domain IV) AFL94_02055 PF03453 MoeA N-terminal region (domain I and II) AFL94_02065 PF00899 ThiF family AFL94_02065 PF00581 Rhodanese-like domain AFL94_02070 PF02391 MoaE protein AFL94_02080 PF04978 Protein of unknown function (DUF664) AFL94_02090 PF06463 Molybdenum Cofactor Synthesis C AFL94_02090 PF04055 Radical SAM superfamily AFL94_02100 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_02110 PF03453 MoeA N-terminal region (domain I and II) AFL94_02110 PF03454 MoeA C-terminal region (domain IV) AFL94_02110 PF00994 Probable molybdopterin binding domain AFL94_02115 PF12804 MobA-like NTP transferase domain AFL94_02130 PF02665 Nitrate reductase gamma subunit AFL94_02130 PF00384 Molybdopterin oxidoreductase AFL94_02130 PF02613 Nitrate reductase delta subunit AFL94_02135 PF02613 Nitrate reductase delta subunit AFL94_02135 PF00384 Molybdopterin oxidoreductase AFL94_02135 PF02665 Nitrate reductase gamma subunit AFL94_02140 PF14711 Respiratory nitrate reductase beta C-terminal AFL94_02140 PF13247 4Fe-4S dicluster domain AFL94_02145 PF01568 Molydopterin dinucleotide binding domain AFL94_02145 PF00384 Molybdopterin oxidoreductase AFL94_02150 PF07690 Major Facilitator Superfamily AFL94_02155 PF00293 NUDIX domain AFL94_02170 PF04226 Transglycosylase associated protein AFL94_02180 PF14437 MafB19-like deaminase AFL94_02190 PF00672 HAMP domain AFL94_02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_02190 PF00512 His Kinase A (phospho-acceptor) domain AFL94_02195 PF00486 Transcriptional regulatory protein, C terminal AFL94_02195 PF00072 Response regulator receiver domain AFL94_02200 PF00486 Transcriptional regulatory protein, C terminal AFL94_02200 PF00072 Response regulator receiver domain AFL94_02220 PF08361 MAATS-type transcriptional repressor, C-terminal region AFL94_02220 PF00440 Bacterial regulatory proteins, tetR family AFL94_02245 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_02250 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_02260 PF00356 Bacterial regulatory proteins, lacI family AFL94_02280 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AFL94_02280 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AFL94_02285 PF07690 Major Facilitator Superfamily AFL94_02300 PF00970 Oxidoreductase FAD-binding domain AFL94_02300 PF00175 Oxidoreductase NAD-binding domain AFL94_02300 PF00042 Globin AFL94_02305 PF02082 Transcriptional regulator AFL94_02315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_02315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_02315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_02315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_02320 PF00270 DEAD/DEAH box helicase AFL94_02320 PF00271 Helicase conserved C-terminal domain AFL94_02320 PF16124 RecQ zinc-binding AFL94_02320 PF09382 RQC domain AFL94_02320 PF00570 HRDC domain AFL94_02335 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFL94_02335 PF00326 Prolyl oligopeptidase family AFL94_02350 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_02350 PF00107 Zinc-binding dehydrogenase AFL94_02355 PF13722 5TM C-terminal transporter carbon starvation CstA AFL94_02355 PF02554 Carbon starvation protein CstA AFL94_02370 PF00248 Aldo/keto reductase family AFL94_02390 PF00561 alpha/beta hydrolase fold AFL94_02395 PF12169 DNA polymerase III subunits gamma and tau domain III AFL94_02395 PF12170 DNA polymerase III tau subunit V interacting with alpha AFL94_02395 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AFL94_02400 PF02223 Thymidylate kinase AFL94_02405 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_02415 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_02425 PF01895 PhoU domain AFL94_02430 PF00512 His Kinase A (phospho-acceptor) domain AFL94_02430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_02435 PF00072 Response regulator receiver domain AFL94_02435 PF00486 Transcriptional regulatory protein, C terminal AFL94_02445 PF02559 CarD-like/TRCF domain AFL94_02450 PF02542 YgbB family AFL94_02450 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFL94_02455 PF09190 DALR domain AFL94_02455 PF01406 tRNA synthetases class I (C) catalytic domain AFL94_02460 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFL94_02460 PF00588 SpoU rRNA Methylase family AFL94_02480 PF01565 FAD binding domain AFL94_02480 PF02913 FAD linked oxidases, C-terminal domain AFL94_02520 PF00005 ABC transporter AFL94_02520 PF17912 MalK OB fold domain AFL94_02525 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFL94_02525 PF02358 Trehalose-phosphatase AFL94_02525 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFL94_02525 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFL94_02530 PF00982 Glycosyltransferase family 20 AFL94_02550 PF13276 HTH-like domain AFL94_02550 PF00665 Integrase core domain AFL94_02550 PF13333 Integrase core domain AFL94_02555 PF01527 Transposase AFL94_02560 PF01555 DNA methylase AFL94_02560 PF18273 Type III R-M EcoP15I C-terminal domain AFL94_02570 PF05661 Protein of unknown function (DUF808) AFL94_02575 PF02384 N-6 DNA Methylase AFL94_02605 PF03167 Uracil DNA glycosylase superfamily AFL94_02620 PF00118 TCP-1/cpn60 chaperonin family AFL94_02640 PF00512 His Kinase A (phospho-acceptor) domain AFL94_02640 PF00672 HAMP domain AFL94_02640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_02645 PF00072 Response regulator receiver domain AFL94_02645 PF00486 Transcriptional regulatory protein, C terminal AFL94_02655 PF00313 'Cold-shock' DNA-binding domain AFL94_02665 PF00266 Aminotransferase class-V AFL94_02670 PF18357 Diphteria toxin repressor SH3 domain AFL94_02670 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_02670 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFL94_02675 PF08525 Opacity-associated protein A N-terminal motif AFL94_02675 PF01551 Peptidase family M23 AFL94_02675 PF01476 LysM domain AFL94_02680 PF00877 NlpC/P60 family AFL94_02690 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AFL94_02690 PF00293 NUDIX domain AFL94_02690 PF09297 NADH pyrophosphatase zinc ribbon domain AFL94_02710 PF13361 UvrD-like helicase C-terminal domain AFL94_02710 PF00580 UvrD/REP helicase N-terminal domain AFL94_02715 PF08442 ATP-grasp domain AFL94_02715 PF00549 CoA-ligase AFL94_02720 PF02629 CoA binding domain AFL94_02720 PF00549 CoA-ligase AFL94_02755 PF08671 Anti-repressor SinI AFL94_02755 PF01381 Helix-turn-helix AFL94_02775 PF00202 Aminotransferase class-III AFL94_02780 PF00491 Arginase family AFL94_02785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_02785 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_02785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_02795 PF00459 Inositol monophosphatase family AFL94_02805 PF07690 Major Facilitator Superfamily AFL94_02815 PF02515 CoA-transferase family III AFL94_02820 PF17853 GGDEF-like domain AFL94_02820 PF07905 Purine catabolism regulatory protein-like family AFL94_02820 PF13556 PucR C-terminal helix-turn-helix domain AFL94_02825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_02825 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_02825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_02830 PF00171 Aldehyde dehydrogenase family AFL94_02835 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_02835 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_02855 PF04954 Siderophore-interacting protein AFL94_02855 PF08021 Siderophore-interacting FAD-binding domain AFL94_02860 PF13302 Acetyltransferase (GNAT) domain AFL94_02860 PF00958 GMP synthase C terminal domain AFL94_02860 PF13673 Acetyltransferase (GNAT) domain AFL94_02860 PF03352 Methyladenine glycosylase AFL94_02860 PF00117 Glutamine amidotransferase class-I AFL94_02865 PF01022 Bacterial regulatory protein, arsR family AFL94_02870 PF01545 Cation efflux family AFL94_02875 PF12704 MacB-like periplasmic core domain AFL94_02875 PF00005 ABC transporter AFL94_02875 PF02687 FtsX-like permease family AFL94_02880 PF12704 MacB-like periplasmic core domain AFL94_02880 PF02687 FtsX-like permease family AFL94_02925 PF03631 Virulence factor BrkB AFL94_02930 PF07501 G5 domain AFL94_02930 PF06737 Transglycosylase-like domain AFL94_02930 PF03990 G5-linked-Ubiquitin-like domain AFL94_02935 PF02515 CoA-transferase family III AFL94_02945 PF03301 Tryptophan 2,3-dioxygenase AFL94_02955 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_02960 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_02975 PF00551 Formyl transferase AFL94_02980 PF00106 short chain dehydrogenase AFL94_03010 PF07690 Major Facilitator Superfamily AFL94_03020 PF02142 MGS-like domain AFL94_03020 PF01808 AICARFT/IMPCHase bienzyme AFL94_03025 PF02028 BCCT, betaine/carnitine/choline family transporter AFL94_03045 PF01566 Natural resistance-associated macrophage protein AFL94_03050 PF07286 Protein of unknown function (DUF1445) AFL94_03065 PF00392 Bacterial regulatory proteins, gntR family AFL94_03065 PF07729 FCD domain AFL94_03080 PF00289 Biotin carboxylase, N-terminal domain AFL94_03080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_03080 PF02785 Biotin carboxylase C-terminal domain AFL94_03080 PF00364 Biotin-requiring enzyme AFL94_03085 PF02626 Carboxyltransferase domain, subdomain A and B AFL94_03090 PF03746 LamB/YcsF family AFL94_03095 PF00199 Catalase AFL94_03095 PF06628 Catalase-related immune-responsive AFL94_03095 PF18011 C-terminal domain found in long catalases AFL94_03100 PF07690 Major Facilitator Superfamily AFL94_03110 PF03971 Monomeric isocitrate dehydrogenase AFL94_03120 PF13286 Phosphohydrolase-associated domain AFL94_03120 PF01966 HD domain AFL94_03125 PF00392 Bacterial regulatory proteins, gntR family AFL94_03125 PF07729 FCD domain AFL94_03130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_03170 PF00005 ABC transporter AFL94_03190 PF01717 Cobalamin-independent synthase, Catalytic domain AFL94_03190 PF08267 Cobalamin-independent synthase, N-terminal domain AFL94_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_03200 PF03466 LysR substrate binding domain AFL94_03205 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_03210 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_03245 PF06445 GyrI-like small molecule binding domain AFL94_03245 PF12833 Helix-turn-helix domain AFL94_03250 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_03255 PF00551 Formyl transferase AFL94_03265 PF00743 Flavin-binding monooxygenase-like AFL94_03270 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFL94_03270 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFL94_03300 PF04226 Transglycosylase associated protein AFL94_03305 PF07690 Major Facilitator Superfamily AFL94_03305 PF00083 Sugar (and other) transporter AFL94_03310 PF03466 LysR substrate binding domain AFL94_03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_03320 PF00072 Response regulator receiver domain AFL94_03320 PF00196 Bacterial regulatory proteins, luxR family AFL94_03345 PF03372 Endonuclease/Exonuclease/phosphatase family AFL94_03350 PF00579 tRNA synthetases class I (W and Y) AFL94_03370 PF01740 STAS domain AFL94_03370 PF00916 Sulfate permease family AFL94_03380 PF03781 Sulfatase-modifying factor enzyme 1 AFL94_03385 PF00196 Bacterial regulatory proteins, luxR family AFL94_03385 PF00072 Response regulator receiver domain AFL94_03410 PF13085 2Fe-2S iron-sulfur cluster binding domain AFL94_03415 PF02910 Fumarate reductase flavoprotein C-term AFL94_03415 PF00890 FAD binding domain AFL94_03425 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFL94_03430 PF01050 Mannose-6-phosphate isomerase AFL94_03430 PF00483 Nucleotidyl transferase AFL94_03435 PF02028 BCCT, betaine/carnitine/choline family transporter AFL94_03440 PF01546 Peptidase family M20/M25/M40 AFL94_03440 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFL94_03445 PF02608 ABC transporter substrate-binding protein PnrA-like AFL94_03465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_03470 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AFL94_03470 PF00591 Glycosyl transferase family, a/b domain AFL94_03470 PF02885 Glycosyl transferase family, helical bundle domain AFL94_03480 PF00962 Adenosine/AMP deaminase AFL94_03485 PF00171 Aldehyde dehydrogenase family AFL94_03490 PF03819 MazG nucleotide pyrophosphohydrolase domain AFL94_03495 PF00113 Enolase, C-terminal TIM barrel domain AFL94_03495 PF03952 Enolase, N-terminal domain AFL94_03510 PF02541 Ppx/GppA phosphatase family AFL94_03540 PF01594 AI-2E family transporter AFL94_03545 PF13291 ACT domain AFL94_03545 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_03550 PF03449 Transcription elongation factor, N-terminal AFL94_03550 PF01272 Transcription elongation factor, GreA/GreB, C-term AFL94_03560 PF02585 GlcNAc-PI de-N-acetylase AFL94_03575 PF01255 Putative undecaprenyl diphosphate synthase AFL94_03580 PF13638 PIN domain AFL94_03580 PF02562 PhoH-like protein AFL94_03595 PF00293 NUDIX domain AFL94_03600 PF07690 Major Facilitator Superfamily AFL94_03625 PF00206 Lyase AFL94_03625 PF10415 Fumarase C C-terminus AFL94_03630 PF00484 Carbonic anhydrase AFL94_03640 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFL94_03645 PF01238 Phosphomannose isomerase type I AFL94_03650 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_03655 PF00731 AIR carboxylase AFL94_03660 PF02222 ATP-grasp domain AFL94_03660 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFL94_03665 PF04138 GtrA-like protein AFL94_03675 PF02467 Transcription factor WhiB AFL94_03710 PF00501 AMP-binding enzyme AFL94_03715 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AFL94_03715 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase AFL94_03720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFL94_03725 PF00171 Aldehyde dehydrogenase family AFL94_03740 PF17863 AAA lid domain AFL94_03740 PF07726 ATPase family associated with various cellular activities (AAA) AFL94_03745 PF01026 TatD related DNase AFL94_03750 PF03990 G5-linked-Ubiquitin-like domain AFL94_03750 PF07501 G5 domain AFL94_03750 PF06737 Transglycosylase-like domain AFL94_03755 PF00398 Ribosomal RNA adenine dimethylase AFL94_03760 PF00288 GHMP kinases N terminal domain AFL94_03760 PF08544 GHMP kinases C terminal AFL94_03775 PF00155 Aminotransferase class I and II AFL94_03790 PF12848 ABC transporter AFL94_03790 PF16326 ABC transporter C-terminal domain AFL94_03790 PF00005 ABC transporter AFL94_03800 PF12804 MobA-like NTP transferase domain AFL94_03800 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_03805 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFL94_03805 PF14572 Phosphoribosyl synthetase-associated domain AFL94_03815 PF14693 Ribosomal protein TL5, C-terminal domain AFL94_03815 PF01386 Ribosomal L25p family AFL94_03820 PF01195 Peptidyl-tRNA hydrolase AFL94_03830 PF00266 Aminotransferase class-V AFL94_03835 PF01592 NifU-like N terminal domain AFL94_03840 PF06965 Na+/H+ antiporter 1 AFL94_03850 PF02559 CarD-like/TRCF domain AFL94_03850 PF00270 DEAD/DEAH box helicase AFL94_03850 PF00271 Helicase conserved C-terminal domain AFL94_03850 PF03461 TRCF domain AFL94_03850 PF17757 UvrB interaction domain AFL94_03860 PF00403 Heavy-metal-associated domain AFL94_03870 PF01791 DeoC/LacD family aldolase AFL94_03875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_03875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_03875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_03875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_03880 PF01048 Phosphorylase superfamily AFL94_03885 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_03885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_03890 PF07690 Major Facilitator Superfamily AFL94_03890 PF00083 Sugar (and other) transporter AFL94_03910 PF00289 Biotin carboxylase, N-terminal domain AFL94_03910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_03910 PF02785 Biotin carboxylase C-terminal domain AFL94_03910 PF00364 Biotin-requiring enzyme AFL94_03920 PF03738 Glutathionylspermidine synthase preATP-grasp AFL94_03930 PF02545 Maf-like protein AFL94_03935 PF03176 MMPL family AFL94_03960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_03970 PF07690 Major Facilitator Superfamily AFL94_03985 PF01039 Carboxyl transferase domain AFL94_03990 PF00596 Class II Aldolase and Adducin N-terminal domain AFL94_04005 PF00211 Adenylate and Guanylate cyclase catalytic domain AFL94_04005 PF16701 Adenylate cyclase regulatory domain AFL94_04015 PF03120 NAD-dependent DNA ligase OB-fold domain AFL94_04015 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFL94_04015 PF01653 NAD-dependent DNA ligase adenylation domain AFL94_04015 PF00533 BRCA1 C Terminus (BRCT) domain AFL94_04015 PF12826 Helix-hairpin-helix motif AFL94_04020 PF00459 Inositol monophosphatase family AFL94_04040 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFL94_04045 PF00933 Glycosyl hydrolase family 3 N terminal domain AFL94_04075 PF02686 Glu-tRNAGln amidotransferase C subunit AFL94_04080 PF01425 Amidase AFL94_04085 PF02934 GatB/GatE catalytic domain AFL94_04085 PF02637 GatB domain AFL94_04100 PF00480 ROK family AFL94_04105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_04110 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04115 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_04115 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_04120 PF00005 ABC transporter AFL94_04125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_04125 PF00005 ABC transporter AFL94_04130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_04130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_04135 PF13419 Haloacid dehalogenase-like hydrolase AFL94_04145 PF07690 Major Facilitator Superfamily AFL94_04155 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_04155 PF00107 Zinc-binding dehydrogenase AFL94_04160 PF00155 Aminotransferase class I and II AFL94_04165 PF00356 Bacterial regulatory proteins, lacI family AFL94_04170 PF01547 Bacterial extracellular solute-binding protein AFL94_04175 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04180 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04195 PF17391 Urocanase N-terminal domain AFL94_04195 PF17392 Urocanase C-terminal domain AFL94_04195 PF01175 Urocanase Rossmann-like domain AFL94_04205 PF01546 Peptidase family M20/M25/M40 AFL94_04210 PF01979 Amidohydrolase family AFL94_04215 PF01979 Amidohydrolase family AFL94_04220 PF08534 Redoxin AFL94_04225 PF01380 SIS domain AFL94_04225 PF00571 CBS domain AFL94_04230 PF03309 Type III pantothenate kinase AFL94_04235 PF00294 pfkB family carbohydrate kinase AFL94_04240 PF01116 Fructose-bisphosphate aldolase class-II AFL94_04245 PF01547 Bacterial extracellular solute-binding protein AFL94_04255 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04265 PF08220 DeoR-like helix-turn-helix domain AFL94_04265 PF00455 DeoR C terminal sensor domain AFL94_04295 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_04300 PF00561 alpha/beta hydrolase fold AFL94_04305 PF13472 GDSL-like Lipase/Acylhydrolase family AFL94_04325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_04325 PF03129 Anticodon binding domain AFL94_04360 PF01207 Dihydrouridine synthase (Dus) AFL94_04365 PF01966 HD domain AFL94_04365 PF13286 Phosphohydrolase-associated domain AFL94_04370 PF13662 Toprim domain AFL94_04370 PF10410 DnaB-helicase binding domain of primase AFL94_04370 PF08278 DNA primase DnaG DnaB-binding AFL94_04370 PF08275 DNA primase catalytic core, N-terminal domain AFL94_04370 PF01807 CHC2 zinc finger AFL94_04395 PF13732 Domain of unknown function (DUF4162) AFL94_04395 PF00005 ABC transporter AFL94_04405 PF03551 Transcriptional regulator PadR-like family AFL94_04415 PF04183 IucA / IucC family AFL94_04415 PF06276 Ferric iron reductase FhuF-like transporter AFL94_04420 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AFL94_04425 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFL94_04435 PF00534 Glycosyl transferases group 1 AFL94_04435 PF13579 Glycosyl transferase 4-like domain AFL94_04455 PF13439 Glycosyltransferase Family 4 AFL94_04455 PF00534 Glycosyl transferases group 1 AFL94_04470 PF00318 Ribosomal protein S2 AFL94_04475 PF00889 Elongation factor TS AFL94_04480 PF00696 Amino acid kinase family AFL94_04485 PF01765 Ribosome recycling factor AFL94_04500 PF00474 Sodium:solute symporter family AFL94_04510 PF04397 LytTr DNA-binding domain AFL94_04510 PF00072 Response regulator receiver domain AFL94_04515 PF06580 Histidine kinase AFL94_04515 PF07694 5TMR of 5TMR-LYT AFL94_04525 PF00474 Sodium:solute symporter family AFL94_04530 PF02585 GlcNAc-PI de-N-acetylase AFL94_04535 PF01820 D-ala D-ala ligase N-terminus AFL94_04535 PF07478 D-ala D-ala ligase C-terminus AFL94_04540 PF00535 Glycosyl transferase family 2 AFL94_04550 PF00676 Dehydrogenase E1 component AFL94_04555 PF02780 Transketolase, C-terminal domain AFL94_04555 PF02779 Transketolase, pyrimidine binding domain AFL94_04560 PF00364 Biotin-requiring enzyme AFL94_04560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_04560 PF02817 e3 binding domain AFL94_04565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_04570 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04575 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_04575 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04580 PF00005 ABC transporter AFL94_04580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_04590 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04595 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_04595 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04600 PF00005 ABC transporter AFL94_04600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_04615 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_04615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_04615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_04620 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFL94_04620 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFL94_04620 PF13288 DXP reductoisomerase C-terminal domain AFL94_04625 PF17820 PDZ domain AFL94_04625 PF02163 Peptidase family M50 AFL94_04635 PF03462 PCRF domain AFL94_04635 PF00472 RF-1 domain AFL94_04640 PF03358 NADPH-dependent FMN reductase AFL94_04645 PF04551 GcpE protein AFL94_04675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_04675 PF04073 Aminoacyl-tRNA editing domain AFL94_04675 PF03129 Anticodon binding domain AFL94_04680 PF01925 Sulfite exporter TauE/SafE AFL94_04685 PF00072 Response regulator receiver domain AFL94_04685 PF00196 Bacterial regulatory proteins, luxR family AFL94_04690 PF07730 Histidine kinase AFL94_04700 PF03631 Virulence factor BrkB AFL94_04715 PF17384 RimP C-terminal SH3 domain AFL94_04715 PF02576 RimP N-terminal domain AFL94_04720 PF13184 NusA-like KH domain AFL94_04720 PF08529 NusA N-terminal domain AFL94_04725 PF04760 Translation initiation factor IF-2, N-terminal region AFL94_04725 PF00009 Elongation factor Tu GTP binding domain AFL94_04725 PF11987 Translation-initiation factor 2 AFL94_04730 PF02033 Ribosome-binding factor A AFL94_04740 PF10099 Anti-sigma-K factor rskA AFL94_04745 PF04545 Sigma-70, region 4 AFL94_04745 PF04542 Sigma-70 region 2 AFL94_04750 PF02469 Fasciclin domain AFL94_04760 PF00474 Sodium:solute symporter family AFL94_04765 PF07690 Major Facilitator Superfamily AFL94_04770 PF07687 Peptidase dimerisation domain AFL94_04770 PF01546 Peptidase family M20/M25/M40 AFL94_04785 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFL94_04785 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFL94_04785 PF09142 tRNA Pseudouridine synthase II, C terminal AFL94_04800 PF06574 FAD synthetase AFL94_04800 PF01687 Riboflavin kinase AFL94_04805 PF08241 Methyltransferase domain AFL94_04810 PF00312 Ribosomal protein S15 AFL94_04825 PF00266 Aminotransferase class-V AFL94_04830 PF17676 LD-carboxypeptidase C-terminal domain AFL94_04830 PF02016 LD-carboxypeptidase N-terminal domain AFL94_04845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_04845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_04845 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_04860 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AFL94_04865 PF00501 AMP-binding enzyme AFL94_04870 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFL94_04870 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFL94_04880 PF00582 Universal stress protein family AFL94_04900 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFL94_04900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_04900 PF00989 PAS fold AFL94_04900 PF17203 Single cache domain 3 AFL94_04905 PF00072 Response regulator receiver domain AFL94_04905 PF08279 HTH domain AFL94_04910 PF03747 ADP-ribosylglycohydrolase AFL94_04915 PF07690 Major Facilitator Superfamily AFL94_04920 PF00155 Aminotransferase class I and II AFL94_04920 PF00392 Bacterial regulatory proteins, gntR family AFL94_04925 PF00575 S1 RNA binding domain AFL94_04925 PF01138 3' exoribonuclease family, domain 1 AFL94_04925 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFL94_04925 PF00013 KH domain AFL94_04940 PF12833 Helix-turn-helix domain AFL94_04940 PF14525 AraC-binding-like domain AFL94_04950 PF17885 Styrene monooxygenase A putative substrate binding domain AFL94_04955 PF01613 Flavin reductase like domain AFL94_04970 PF01613 Flavin reductase like domain AFL94_04975 PF00296 Luciferase-like monooxygenase AFL94_04985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_04985 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_04985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_05000 PF01494 FAD binding domain AFL94_05005 PF13193 AMP-binding enzyme C-terminal domain AFL94_05005 PF00501 AMP-binding enzyme AFL94_05020 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_05025 PF01042 Endoribonuclease L-PSP AFL94_05035 PF01048 Phosphorylase superfamily AFL94_05040 PF02664 S-Ribosylhomocysteinase (LuxS) AFL94_05055 PF00149 Calcineurin-like phosphoesterase AFL94_05060 PF00890 FAD binding domain AFL94_05065 PF03466 LysR substrate binding domain AFL94_05065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_05070 PF07690 Major Facilitator Superfamily AFL94_05070 PF00083 Sugar (and other) transporter AFL94_05075 PF03435 Saccharopine dehydrogenase NADP binding domain AFL94_05075 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFL94_05075 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_05080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_05080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_05100 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_05100 PF00107 Zinc-binding dehydrogenase AFL94_05120 PF05193 Peptidase M16 inactive domain AFL94_05120 PF00675 Insulinase (Peptidase family M16) AFL94_05135 PF01113 Dihydrodipicolinate reductase, N-terminus AFL94_05135 PF05173 Dihydrodipicolinate reductase, C-terminus AFL94_05150 PF00701 Dihydrodipicolinate synthetase family AFL94_05155 PF17770 Ribonuclease J C-terminal domain AFL94_05155 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFL94_05155 PF12706 Beta-lactamase superfamily domain AFL94_05170 PF05154 TM2 domain AFL94_05175 PF00005 ABC transporter AFL94_05175 PF00571 CBS domain AFL94_05180 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_05195 PF09397 Ftsk gamma domain AFL94_05195 PF01580 FtsK/SpoIIIE family AFL94_05195 PF17854 FtsK alpha domain AFL94_05205 PF02464 Competence-damaged protein AFL94_05205 PF18146 Damage-inducible protein CinA KH domain AFL94_05205 PF00994 Probable molybdopterin binding domain AFL94_05220 PF00154 recA bacterial DNA recombination protein AFL94_05225 PF02631 RecX family AFL94_05230 PF01938 TRAM domain AFL94_05230 PF00919 Uncharacterized protein family UPF0004 AFL94_05230 PF04055 Radical SAM superfamily AFL94_05240 PF01678 Diaminopimelate epimerase AFL94_05245 PF05175 Methyltransferase small domain AFL94_05245 PF08468 Methyltransferase small domain N-terminal AFL94_05255 PF13307 Helicase C-terminal domain AFL94_05260 PF00717 Peptidase S24-like AFL94_05260 PF01726 LexA DNA binding domain AFL94_05270 PF00155 Aminotransferase class I and II AFL94_05275 PF00475 Imidazoleglycerol-phosphate dehydratase AFL94_05280 PF00117 Glutamine amidotransferase class-I AFL94_05285 PF00977 Histidine biosynthesis protein AFL94_05305 PF05198 Translation initiation factor IF-3, N-terminal domain AFL94_05305 PF00707 Translation initiation factor IF-3, C-terminal domain AFL94_05310 PF01632 Ribosomal protein L35 AFL94_05315 PF00453 Ribosomal protein L20 AFL94_05320 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFL94_05320 PF00588 SpoU rRNA Methylase family AFL94_05325 PF00293 NUDIX domain AFL94_05335 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFL94_05335 PF01409 tRNA synthetases class II core domain (F) AFL94_05340 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFL94_05340 PF01588 Putative tRNA binding domain AFL94_05340 PF03483 B3/4 domain AFL94_05340 PF03484 tRNA synthetase B5 domain AFL94_05340 PF03147 Ferredoxin-fold anticodon binding domain AFL94_05345 PF08003 Protein of unknown function (DUF1698) AFL94_05360 PF00156 Phosphoribosyl transferase domain AFL94_05390 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_05390 PF00107 Zinc-binding dehydrogenase AFL94_05395 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFL94_05395 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFL94_05400 PF01960 ArgJ family AFL94_05405 PF00696 Amino acid kinase family AFL94_05410 PF00202 Aminotransferase class-III AFL94_05415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFL94_05415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFL94_05420 PF01316 Arginine repressor, DNA binding domain AFL94_05420 PF02863 Arginine repressor, C-terminal domain AFL94_05425 PF01661 Macro domain AFL94_05430 PF00206 Lyase AFL94_05430 PF14698 Argininosuccinate lyase C-terminal AFL94_05440 PF00156 Phosphoribosyl transferase domain AFL94_05450 PF00579 tRNA synthetases class I (W and Y) AFL94_05480 PF13344 Haloacid dehalogenase-like hydrolase AFL94_05480 PF18407 GCN5-related N-acetyltransferase like domain AFL94_05490 PF01479 S4 domain AFL94_05490 PF01728 FtsJ-like methyltransferase AFL94_05495 PF01513 ATP-NAD kinase AFL94_05500 PF02463 RecF/RecN/SMC N terminal domain AFL94_05505 PF06418 CTP synthase N-terminus AFL94_05505 PF00117 Glutamine amidotransferase class-I AFL94_05510 PF00293 NUDIX domain AFL94_05515 PF02899 Phage integrase, N-terminal SAM-like domain AFL94_05515 PF00589 Phage integrase family AFL94_05520 PF00293 NUDIX domain AFL94_05525 PF13443 Cro/C1-type HTH DNA-binding domain AFL94_05535 PF00285 Citrate synthase, C-terminal domain AFL94_05545 PF03972 MmgE/PrpD family AFL94_05550 PF07729 FCD domain AFL94_05550 PF00392 Bacterial regulatory proteins, gntR family AFL94_05555 PF16177 Acetyl-coenzyme A synthetase N-terminus AFL94_05555 PF00501 AMP-binding enzyme AFL94_05555 PF13193 AMP-binding enzyme C-terminal domain AFL94_05565 PF00072 Response regulator receiver domain AFL94_05565 PF04703 FaeA-like protein AFL94_05570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_05570 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFL94_05570 PF17203 Single cache domain 3 AFL94_05575 PF00375 Sodium:dicarboxylate symporter family AFL94_05585 PF13614 AAA domain AFL94_05590 PF02616 Segregation and condensation protein ScpA AFL94_05595 PF04079 Segregation and condensation complex subunit ScpB AFL94_05600 PF01479 S4 domain AFL94_05600 PF00849 RNA pseudouridylate synthase AFL94_05605 PF02153 Prephenate dehydrogenase AFL94_05610 PF02224 Cytidylate kinase AFL94_05615 PF01926 50S ribosome-binding GTPase AFL94_05615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFL94_05625 PF02567 Phenazine biosynthesis-like protein AFL94_05635 PF00005 ABC transporter AFL94_05640 PF07976 Phenol hydroxylase, C-terminal dimerisation domain AFL94_05640 PF01494 FAD binding domain AFL94_05645 PF04343 Protein of unknown function, DUF488 AFL94_05650 PF00498 FHA domain AFL94_05655 PF00376 MerR family regulatory protein AFL94_05660 PF02577 Bifunctional nuclease AFL94_05665 PF13411 MerR HTH family regulatory protein AFL94_05670 PF13614 AAA domain AFL94_05675 PF00364 Biotin-requiring enzyme AFL94_05675 PF00289 Biotin carboxylase, N-terminal domain AFL94_05675 PF02436 Conserved carboxylase domain AFL94_05675 PF02785 Biotin carboxylase C-terminal domain AFL94_05675 PF00682 HMGL-like AFL94_05675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_05685 PF00501 AMP-binding enzyme AFL94_05705 PF01474 Class-II DAHP synthetase family AFL94_05715 PF02467 Transcription factor WhiB AFL94_05725 PF12538 DNA transporter AFL94_05725 PF01580 FtsK/SpoIIIE family AFL94_05730 PF00437 Type II/IV secretion system protein AFL94_05765 PF00472 RF-1 domain AFL94_05765 PF03462 PCRF domain AFL94_05770 PF00005 ABC transporter AFL94_05775 PF18075 FtsX extracellular domain AFL94_05775 PF02687 FtsX-like permease family AFL94_05780 PF10145 Phage-related minor tail protein AFL94_05780 PF01551 Peptidase family M23 AFL94_05780 PF01464 Transglycosylase SLT domain AFL94_05785 PF01668 SmpB protein AFL94_05795 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFL94_05800 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFL94_05805 PF00582 Universal stress protein family AFL94_05810 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_05810 PF00950 ABC 3 transport family AFL94_05815 PF00459 Inositol monophosphatase family AFL94_05820 PF03193 RsgA GTPase AFL94_05825 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFL94_05830 PF04542 Sigma-70 region 2 AFL94_05830 PF08281 Sigma-70, region 4 AFL94_05845 PF16078 2-oxoglutarate dehydrogenase N-terminus AFL94_05845 PF16870 2-oxoglutarate dehydrogenase C-terminal AFL94_05845 PF02779 Transketolase, pyrimidine binding domain AFL94_05845 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_05845 PF00676 Dehydrogenase E1 component AFL94_05850 PF00571 CBS domain AFL94_05850 PF03471 Transporter associated domain AFL94_05850 PF01595 Cyclin M transmembrane N-terminal domain AFL94_05855 PF03471 Transporter associated domain AFL94_05855 PF01595 Cyclin M transmembrane N-terminal domain AFL94_05855 PF00571 CBS domain AFL94_05860 PF00005 ABC transporter AFL94_05885 PF08544 GHMP kinases C terminal AFL94_05885 PF00288 GHMP kinases N terminal domain AFL94_05890 PF00581 Rhodanese-like domain AFL94_05895 PF01230 HIT domain AFL94_05900 PF00271 Helicase conserved C-terminal domain AFL94_05900 PF04408 Helicase associated domain (HA2) AFL94_05900 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AFL94_05900 PF11898 Domain of unknown function (DUF3418) AFL94_05900 PF00270 DEAD/DEAH box helicase AFL94_05915 PF00005 ABC transporter AFL94_05925 PF00750 tRNA synthetases class I (R) AFL94_05925 PF03485 Arginyl tRNA synthetase N terminal domain AFL94_05925 PF05746 DALR anticodon binding domain AFL94_05930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFL94_05930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFL94_05935 PF03447 Homoserine dehydrogenase, NAD binding domain AFL94_05935 PF01842 ACT domain AFL94_05935 PF00742 Homoserine dehydrogenase AFL94_05940 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_05945 PF00288 GHMP kinases N terminal domain AFL94_05950 PF07498 Rho termination factor, N-terminal domain AFL94_05950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_05950 PF07497 Rho termination factor, RNA-binding domain AFL94_05955 PF03462 PCRF domain AFL94_05955 PF00472 RF-1 domain AFL94_05960 PF17827 PrmC N-terminal domain AFL94_05965 PF01300 Telomere recombination AFL94_05970 PF00953 Glycosyl transferase family 4 AFL94_05980 PF00119 ATP synthase A chain AFL94_05985 PF00137 ATP synthase subunit C AFL94_05990 PF00430 ATP synthase B/B' CF(0) AFL94_05995 PF00213 ATP synthase delta (OSCP) subunit AFL94_06000 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFL94_06000 PF00306 ATP synthase alpha/beta chain, C terminal domain AFL94_06000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_06005 PF00231 ATP synthase AFL94_06010 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFL94_06010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_06015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFL94_06030 PF01939 Endonuclease NucS AFL94_06040 PF01594 AI-2E family transporter AFL94_06055 PF13732 Domain of unknown function (DUF4162) AFL94_06055 PF00005 ABC transporter AFL94_06075 PF04851 Type III restriction enzyme, res subunit AFL94_06080 PF09924 Uncharacterised conserved protein (DUF2156) AFL94_06080 PF16995 Transmembrane region of lysyl-tRNA synthetase AFL94_06080 PF00152 tRNA synthetases class II (D, K and N) AFL94_06080 PF01336 OB-fold nucleic acid binding domain AFL94_06095 PF00857 Isochorismatase family AFL94_06100 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFL94_06100 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AFL94_06105 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFL94_06115 PF01177 Asp/Glu/Hydantoin racemase AFL94_06120 PF12706 Beta-lactamase superfamily domain AFL94_06135 PF01227 GTP cyclohydrolase I AFL94_06150 PF01138 3' exoribonuclease family, domain 1 AFL94_06150 PF03725 3' exoribonuclease family, domain 2 AFL94_06155 PF01725 Ham1 family AFL94_06165 PF00005 ABC transporter AFL94_06175 PF14480 DNA polymerase III polC-type N-terminus I AFL94_06175 PF00929 Exonuclease AFL94_06175 PF02811 PHP domain AFL94_06175 PF11490 DNA polymerase III polC-type N-terminus II AFL94_06175 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFL94_06175 PF14579 Helix-hairpin-helix motif AFL94_06175 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFL94_06190 PF00149 Calcineurin-like phosphoesterase AFL94_06190 PF12320 Type 5 capsule protein repressor C-terminal domain AFL94_06195 PF13476 AAA domain AFL94_06210 PF00083 Sugar (and other) transporter AFL94_06215 PF00356 Bacterial regulatory proteins, lacI family AFL94_06220 PF00128 Alpha amylase, catalytic domain AFL94_06230 PF14785 Maltose transport system permease protein MalF P2 domain AFL94_06230 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_06235 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_06250 PF07690 Major Facilitator Superfamily AFL94_06270 PF04851 Type III restriction enzyme, res subunit AFL94_06275 PF01336 OB-fold nucleic acid binding domain AFL94_06275 PF00152 tRNA synthetases class II (D, K and N) AFL94_06275 PF16995 Transmembrane region of lysyl-tRNA synthetase AFL94_06275 PF09924 Uncharacterised conserved protein (DUF2156) AFL94_06290 PF00857 Isochorismatase family AFL94_06295 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AFL94_06295 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFL94_06300 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFL94_06310 PF01177 Asp/Glu/Hydantoin racemase AFL94_06315 PF12706 Beta-lactamase superfamily domain AFL94_06330 PF01227 GTP cyclohydrolase I AFL94_06345 PF03725 3' exoribonuclease family, domain 2 AFL94_06345 PF01138 3' exoribonuclease family, domain 1 AFL94_06350 PF01725 Ham1 family AFL94_06360 PF00005 ABC transporter AFL94_06370 PF14480 DNA polymerase III polC-type N-terminus I AFL94_06370 PF11490 DNA polymerase III polC-type N-terminus II AFL94_06370 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFL94_06370 PF14579 Helix-hairpin-helix motif AFL94_06370 PF02811 PHP domain AFL94_06370 PF00929 Exonuclease AFL94_06370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFL94_06385 PF12320 Type 5 capsule protein repressor C-terminal domain AFL94_06385 PF00149 Calcineurin-like phosphoesterase AFL94_06390 PF13476 AAA domain AFL94_06405 PF00083 Sugar (and other) transporter AFL94_06410 PF00356 Bacterial regulatory proteins, lacI family AFL94_06415 PF00128 Alpha amylase, catalytic domain AFL94_06425 PF14785 Maltose transport system permease protein MalF P2 domain AFL94_06425 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_06430 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_06445 PF07690 Major Facilitator Superfamily AFL94_06460 PF00005 ABC transporter AFL94_06465 PF00156 Phosphoribosyl transferase domain AFL94_06465 PF05139 Erythromycin esterase AFL94_06470 PF02824 TGS domain AFL94_06470 PF13291 ACT domain AFL94_06470 PF04607 Region found in RelA / SpoT proteins AFL94_06480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_06485 PF00171 Aldehyde dehydrogenase family AFL94_06490 PF07729 FCD domain AFL94_06490 PF00392 Bacterial regulatory proteins, gntR family AFL94_06495 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_06510 PF00920 Dehydratase family AFL94_06535 PF02445 Quinolinate synthetase A protein AFL94_06545 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFL94_06545 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFL94_06550 PF00266 Aminotransferase class-V AFL94_06555 PF03033 Glycosyltransferase family 28 N-terminal domain AFL94_06565 PF07690 Major Facilitator Superfamily AFL94_06585 PF01047 MarR family AFL94_06595 PF02623 FliW protein AFL94_06600 PF00669 Bacterial flagellin N-terminal helical region AFL94_06600 PF00700 Bacterial flagellin C-terminal helical region AFL94_06605 PF00460 Flagella basal body rod protein AFL94_06605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_06615 PF04545 Sigma-70, region 4 AFL94_06615 PF04542 Sigma-70 region 2 AFL94_06615 PF04539 Sigma-70 region 3 AFL94_06620 PF00700 Bacterial flagellin C-terminal helical region AFL94_06620 PF00669 Bacterial flagellin N-terminal helical region AFL94_06625 PF02465 Flagellar hook-associated protein 2 N-terminus AFL94_06625 PF07196 Flagellin hook IN motif AFL94_06625 PF07195 Flagellar hook-associated protein 2 C-terminus AFL94_06640 PF00460 Flagella basal body rod protein AFL94_06645 PF00460 Flagella basal body rod protein AFL94_06645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_06650 PF02049 Flagellar hook-basal body complex protein FliE AFL94_06655 PF01514 Secretory protein of YscJ/FliF family AFL94_06655 PF08345 Flagellar M-ring protein C-terminal AFL94_06670 PF18269 T3SS EscN ATPase C-terminal domain AFL94_06670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_06670 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFL94_06680 PF00877 NlpC/P60 family AFL94_06695 PF07559 Flagellar basal body protein FlaE AFL94_06695 PF00460 Flagella basal body rod protein AFL94_06695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_06705 PF01618 MotA/TolQ/ExbB proton channel family AFL94_06710 PF13677 Membrane MotB of proton-channel complex MotA/MotB AFL94_06710 PF00691 OmpA family AFL94_06720 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFL94_06730 PF00813 FliP family AFL94_06735 PF01313 Bacterial export proteins, family 3 AFL94_06740 PF01311 Bacterial export proteins, family 1 AFL94_06745 PF01312 FlhB HrpN YscU SpaS Family AFL94_06750 PF00771 FHIPEP family AFL94_06760 PF02599 Global regulator protein family AFL94_06780 PF00873 AcrB/AcrD/AcrF family AFL94_06795 PF06039 Malate:quinone oxidoreductase (Mqo) AFL94_06805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_06830 PF00578 AhpC/TSA family AFL94_06840 PF01047 MarR family AFL94_06845 PF11066 Protein of unknown function (DUF2867) AFL94_06845 PF13460 NAD(P)H-binding AFL94_06870 PF01593 Flavin containing amine oxidoreductase AFL94_06890 PF00293 NUDIX domain AFL94_06900 PF03707 Bacterial signalling protein N terminal repeat AFL94_06900 PF00563 EAL domain AFL94_06900 PF00990 Diguanylate cyclase, GGDEF domain AFL94_06915 PF13632 Glycosyl transferase family group 2 AFL94_06915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFL94_06925 PF00920 Dehydratase family AFL94_06930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_06930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_06930 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_06935 PF10369 Small subunit of acetolactate synthase AFL94_06940 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFL94_06940 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFL94_06945 PF13847 Methyltransferase domain AFL94_06945 PF03551 Transcriptional regulator PadR-like family AFL94_06955 PF00483 Nucleotidyl transferase AFL94_06960 PF16363 GDP-mannose 4,6 dehydratase AFL94_06965 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFL94_06975 PF00196 Bacterial regulatory proteins, luxR family AFL94_06980 PF02397 Bacterial sugar transferase AFL94_06985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_06985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_06990 PF16363 GDP-mannose 4,6 dehydratase AFL94_06995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFL94_07005 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFL94_07055 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_07115 PF00535 Glycosyl transferase family 2 AFL94_07140 PF01842 ACT domain AFL94_07140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_07140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFL94_07190 PF01936 NYN domain AFL94_07195 PF08264 Anticodon-binding domain of tRNA AFL94_07195 PF09334 tRNA synthetases class I (M) AFL94_07200 PF00196 Bacterial regulatory proteins, luxR family AFL94_07200 PF00072 Response regulator receiver domain AFL94_07205 PF07730 Histidine kinase AFL94_07210 PF00180 Isocitrate/isopropylmalate dehydrogenase AFL94_07215 PF01063 Amino-transferase class IV AFL94_07220 PF16363 GDP-mannose 4,6 dehydratase AFL94_07225 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_07230 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFL94_07235 PF13419 Haloacid dehalogenase-like hydrolase AFL94_07255 PF03193 RsgA GTPase AFL94_07265 PF02769 AIR synthase related protein, C-terminal domain AFL94_07265 PF00586 AIR synthase related protein, N-terminal domain AFL94_07275 PF00330 Aconitase family (aconitate hydratase) AFL94_07280 PF00694 Aconitase C-terminal domain AFL94_07285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFL94_07295 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFL94_07295 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFL94_07300 PF01820 D-ala D-ala ligase N-terminus AFL94_07300 PF07478 D-ala D-ala ligase C-terminus AFL94_07310 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_07315 PF13684 Dihydroxyacetone kinase family AFL94_07315 PF02734 DAK2 domain AFL94_07320 PF00270 DEAD/DEAH box helicase AFL94_07320 PF00271 Helicase conserved C-terminal domain AFL94_07320 PF17191 RecG wedge domain AFL94_07335 PF00155 Aminotransferase class I and II AFL94_07340 PF01467 Cytidylyltransferase-like AFL94_07345 PF00483 Nucleotidyl transferase AFL94_07350 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_07355 PF01061 ABC-2 type transporter AFL94_07360 PF14524 Wzt C-terminal domain AFL94_07360 PF00005 ABC transporter AFL94_07365 PF00535 Glycosyl transferase family 2 AFL94_07375 PF01467 Cytidylyltransferase-like AFL94_07385 PF00535 Glycosyl transferase family 2 AFL94_07385 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AFL94_07395 PF00665 Integrase core domain AFL94_07395 PF13333 Integrase core domain AFL94_07395 PF13276 HTH-like domain AFL94_07400 PF01527 Transposase AFL94_07405 PF11380 Stealth protein CR2, conserved region 2 AFL94_07405 PF17101 Stealth protein CR1, conserved region 1 AFL94_07405 PF00534 Glycosyl transferases group 1 AFL94_07405 PF17103 Stealth protein CR4, conserved region 4 AFL94_07405 PF17102 Stealth protein CR3, conserved region 3 AFL94_07420 PF14622 Ribonuclease-III-like AFL94_07420 PF00035 Double-stranded RNA binding motif AFL94_07425 PF06827 Zinc finger found in FPG and IleRS AFL94_07425 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_07425 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFL94_07435 PF02463 RecF/RecN/SMC N terminal domain AFL94_07435 PF06470 SMC proteins Flexible Hinge Domain AFL94_07445 PF02881 SRP54-type protein, helical bundle domain AFL94_07445 PF00448 SRP54-type protein, GTPase domain AFL94_07450 PF01757 Acyltransferase family AFL94_07455 PF00909 Ammonium Transporter Family AFL94_07465 PF02881 SRP54-type protein, helical bundle domain AFL94_07465 PF00448 SRP54-type protein, GTPase domain AFL94_07465 PF02978 Signal peptide binding domain AFL94_07480 PF13193 AMP-binding enzyme C-terminal domain AFL94_07480 PF00501 AMP-binding enzyme AFL94_07485 PF13193 AMP-binding enzyme C-terminal domain AFL94_07485 PF00501 AMP-binding enzyme AFL94_07490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_07525 PF13091 PLD-like domain AFL94_07525 PF13396 Phospholipase_D-nuclease N-terminal AFL94_07530 PF02803 Thiolase, C-terminal domain AFL94_07530 PF00108 Thiolase, N-terminal domain AFL94_07535 PF04261 Dyp-type peroxidase family AFL94_07535 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFL94_07540 PF09375 Imelysin AFL94_07540 PF13473 Cupredoxin-like domain AFL94_07545 PF03239 Iron permease FTR1 family AFL94_07585 PF00929 Exonuclease AFL94_07615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_07615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_07615 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_07620 PF01327 Polypeptide deformylase AFL94_07655 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFL94_07655 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFL94_07660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_07660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_07660 PF00403 Heavy-metal-associated domain AFL94_07665 PF03883 Peroxide stress protein YaaA AFL94_07675 PF01784 NIF3 (NGG1p interacting factor 3) AFL94_07680 PF01625 Peptide methionine sulfoxide reductase AFL94_07685 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_07690 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_07700 PF00005 ABC transporter AFL94_07700 PF17755 UvrA DNA-binding domain AFL94_07700 PF17760 UvrA interaction domain AFL94_07715 PF05958 tRNA (Uracil-5-)-methyltransferase AFL94_07715 PF01938 TRAM domain AFL94_07720 PF00107 Zinc-binding dehydrogenase AFL94_07720 PF16884 N-terminal domain of oxidoreductase AFL94_07740 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFL94_07740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_07745 PF07729 FCD domain AFL94_07745 PF00392 Bacterial regulatory proteins, gntR family AFL94_07750 PF02447 GntP family permease AFL94_07760 PF04226 Transglycosylase associated protein AFL94_07770 PF03006 Haemolysin-III related AFL94_07775 PF05532 CsbD-like AFL94_07785 PF01594 AI-2E family transporter AFL94_07800 PF00578 AhpC/TSA family AFL94_07805 PF11253 Protein of unknown function (DUF3052) AFL94_07810 PF17831 Pyruvate dehydrogenase E1 component middle domain AFL94_07810 PF00456 Transketolase, thiamine diphosphate binding domain AFL94_07815 PF13556 PucR C-terminal helix-turn-helix domain AFL94_07815 PF17853 GGDEF-like domain AFL94_07820 PF00698 Acyl transferase domain AFL94_07825 PF00550 Phosphopantetheine attachment site AFL94_07830 PF00109 Beta-ketoacyl synthase, N-terminal domain AFL94_07830 PF02801 Beta-ketoacyl synthase, C-terminal domain AFL94_07850 PF02899 Phage integrase, N-terminal SAM-like domain AFL94_07850 PF00589 Phage integrase family AFL94_07855 PF17782 DprA winged helix domain AFL94_07855 PF02481 DNA recombination-mediator protein A AFL94_07860 PF13335 Magnesium chelatase, subunit ChlI C-terminal AFL94_07860 PF01078 Magnesium chelatase, subunit ChlI AFL94_07865 PF02021 Uncharacterised protein family UPF0102 AFL94_07870 PF10611 Protein of unknown function (DUF2469) AFL94_07875 PF01351 Ribonuclease HII AFL94_07880 PF10502 Signal peptidase, peptidase S26 AFL94_07890 PF10502 Signal peptidase, peptidase S26 AFL94_07895 PF01245 Ribosomal protein L19 AFL94_07900 PF01746 tRNA (Guanine-1)-methyltransferase AFL94_07905 PF01782 RimM N-terminal domain AFL94_07915 PF00886 Ribosomal protein S16 AFL94_07920 PF01810 LysE type translocator AFL94_07960 PF00005 ABC transporter AFL94_07960 PF12848 ABC transporter AFL94_08020 PF00005 ABC transporter AFL94_08030 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFL94_08030 PF00588 SpoU rRNA Methylase family AFL94_08035 PF01197 Ribosomal protein L31 AFL94_08040 PF00107 Zinc-binding dehydrogenase AFL94_08040 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_08045 PF03099 Biotin/lipoate A/B protein ligase family AFL94_08055 PF01433 Peptidase family M1 domain AFL94_08055 PF11838 ERAP1-like C-terminal domain AFL94_08105 PF00108 Thiolase, N-terminal domain AFL94_08105 PF02803 Thiolase, C-terminal domain AFL94_08120 PF00534 Glycosyl transferases group 1 AFL94_08120 PF13439 Glycosyltransferase Family 4 AFL94_08125 PF00561 alpha/beta hydrolase fold AFL94_08135 PF04205 FMN-binding domain AFL94_08135 PF00890 FAD binding domain AFL94_08145 PF01566 Natural resistance-associated macrophage protein AFL94_08150 PF00486 Transcriptional regulatory protein, C terminal AFL94_08150 PF00072 Response regulator receiver domain AFL94_08155 PF00672 HAMP domain AFL94_08155 PF00512 His Kinase A (phospho-acceptor) domain AFL94_08155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_08165 PF01546 Peptidase family M20/M25/M40 AFL94_08165 PF07687 Peptidase dimerisation domain AFL94_08185 PF02673 Bacitracin resistance protein BacA AFL94_08190 PF01406 tRNA synthetases class I (C) catalytic domain AFL94_08200 PF13419 Haloacid dehalogenase-like hydrolase AFL94_08205 PF00571 CBS domain AFL94_08205 PF02163 Peptidase family M50 AFL94_08210 PF08704 tRNA methyltransferase complex GCD14 subunit AFL94_08215 PF16450 Proteasomal ATPase OB C-terminal domain AFL94_08215 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_08215 PF17758 Proteasomal ATPase OB N-terminal domain AFL94_08220 PF03136 Pup-ligase protein AFL94_08225 PF05639 Pup-like protein AFL94_08230 PF03136 Pup-ligase protein AFL94_08235 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AFL94_08235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_08240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_08255 PF02416 mttA/Hcf106 family AFL94_08260 PF00902 Sec-independent protein translocase protein (TatC) AFL94_08265 PF00270 DEAD/DEAH box helicase AFL94_08265 PF00271 Helicase conserved C-terminal domain AFL94_08265 PF08148 DSHCT (NUC185) domain AFL94_08275 PF00535 Glycosyl transferase family 2 AFL94_08280 PF13397 RNA polymerase-binding protein AFL94_08285 PF01145 SPFH domain / Band 7 family AFL94_08295 PF13649 Methyltransferase domain AFL94_08300 PF01327 Polypeptide deformylase AFL94_08320 PF01872 RibD C-terminal domain AFL94_08350 PF02885 Glycosyl transferase family, helical bundle domain AFL94_08350 PF00591 Glycosyl transferase family, a/b domain AFL94_08355 PF00510 Cytochrome c oxidase subunit III AFL94_08360 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFL94_08360 PF00034 Cytochrome c AFL94_08365 PF00355 Rieske [2Fe-2S] domain AFL94_08370 PF13631 Cytochrome b(N-terminal)/b6/petB AFL94_08385 PF12270 Cytochrome c oxidase subunit IV AFL94_08390 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFL94_08395 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFL94_08400 PF01521 Iron-sulphur cluster biosynthesis AFL94_08415 PF01180 Dihydroorotate dehydrogenase AFL94_08420 PF12146 Serine aminopeptidase, S33 AFL94_08425 PF01255 Putative undecaprenyl diphosphate synthase AFL94_08430 PF02565 Recombination protein O C terminal AFL94_08430 PF11967 Recombination protein O N terminal AFL94_08435 PF00682 HMGL-like AFL94_08435 PF08502 LeuA allosteric (dimerisation) domain AFL94_08445 PF01926 50S ribosome-binding GTPase AFL94_08445 PF07650 KH domain AFL94_08450 PF00571 CBS domain AFL94_08450 PF03471 Transporter associated domain AFL94_08450 PF01595 Cyclin M transmembrane N-terminal domain AFL94_08455 PF02130 Uncharacterized protein family UPF0054 AFL94_08460 PF02562 PhoH-like protein AFL94_08470 PF04452 RNA methyltransferase AFL94_08475 PF00684 DnaJ central domain AFL94_08475 PF00226 DnaJ domain AFL94_08475 PF01556 DnaJ C terminal domain AFL94_08480 PF08220 DeoR-like helix-turn-helix domain AFL94_08480 PF01628 HrcA protein C terminal domain AFL94_08495 PF04055 Radical SAM superfamily AFL94_08500 PF06421 GTP-binding protein LepA C-terminus AFL94_08500 PF00009 Elongation factor Tu GTP binding domain AFL94_08500 PF00679 Elongation factor G C-terminus AFL94_08510 PF01649 Ribosomal protein S20 AFL94_08520 PF00753 Metallo-beta-lactamase superfamily AFL94_08520 PF13567 Domain of unknown function (DUF4131) AFL94_08520 PF03772 Competence protein AFL94_08530 PF02645 Uncharacterised protein, DegV family COG1307 AFL94_08535 PF08264 Anticodon-binding domain of tRNA AFL94_08535 PF09334 tRNA synthetases class I (M) AFL94_08535 PF13603 Leucyl-tRNA synthetase, Domain 2 AFL94_08535 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_08550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFL94_08550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFL94_08555 PF00230 Major intrinsic protein AFL94_08560 PF01266 FAD dependent oxidoreductase AFL94_08560 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AFL94_08565 PF04198 Putative sugar-binding domain AFL94_08580 PF17764 3′ DNA-binding domain (3′BD) AFL94_08585 PF02772 S-adenosylmethionine synthetase, central domain AFL94_08585 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFL94_08585 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFL94_08590 PF02441 Flavoprotein AFL94_08590 PF04127 DNA / pantothenate metabolism flavoprotein AFL94_08595 PF01192 RNA polymerase Rpb6 AFL94_08600 PF00625 Guanylate kinase AFL94_08610 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFL94_08615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_08615 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFL94_08615 PF02142 MGS-like domain AFL94_08620 PF00117 Glutamine amidotransferase class-I AFL94_08620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFL94_08630 PF01979 Amidohydrolase family AFL94_08635 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFL94_08635 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFL94_08640 PF00156 Phosphoribosyl transferase domain AFL94_08645 PF01029 NusB family AFL94_08650 PF08207 Elongation factor P (EF-P) KOW-like domain AFL94_08650 PF01132 Elongation factor P (EF-P) OB domain AFL94_08650 PF09285 Elongation factor P, C-terminal AFL94_08660 PF01761 3-dehydroquinate synthase AFL94_08665 PF01202 Shikimate kinase AFL94_08670 PF01264 Chorismate synthase AFL94_08675 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFL94_08675 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_08675 PF01488 Shikimate / quinate 5-dehydrogenase AFL94_08685 PF03652 Holliday junction resolvase AFL94_08690 PF01411 tRNA synthetases class II (A) AFL94_08690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_08690 PF02272 DHHA1 domain AFL94_08715 PF08460 Bacterial SH3 domain AFL94_08715 PF01551 Peptidase family M23 AFL94_08935 PF00436 Single-strand binding protein family AFL94_08985 PF02899 Phage integrase, N-terminal SAM-like domain AFL94_08985 PF00589 Phage integrase family AFL94_08990 PF01479 S4 domain AFL94_08990 PF00163 Ribosomal protein S4/S9 N-terminal domain AFL94_08995 PF12002 MgsA AAA+ ATPase C terminal AFL94_08995 PF16193 AAA C-terminal domain AFL94_08995 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_09000 PF02580 D-Tyr-tRNA(Tyr) deacylase AFL94_09015 PF01336 OB-fold nucleic acid binding domain AFL94_09015 PF02938 GAD domain AFL94_09015 PF00152 tRNA synthetases class II (D, K and N) AFL94_09020 PF03129 Anticodon binding domain AFL94_09020 PF13393 Histidyl-tRNA synthetase AFL94_09025 PF03993 Domain of Unknown Function (DUF349) AFL94_09035 PF13291 ACT domain AFL94_09035 PF04607 Region found in RelA / SpoT proteins AFL94_09035 PF02824 TGS domain AFL94_09040 PF02355 Protein export membrane protein AFL94_09040 PF07549 SecD/SecF GG Motif AFL94_09045 PF07549 SecD/SecF GG Motif AFL94_09045 PF02355 Protein export membrane protein AFL94_09050 PF02699 Preprotein translocase subunit AFL94_09055 PF17864 RuvB AAA lid domain AFL94_09055 PF05491 RuvB C-terminal winged helix domain AFL94_09055 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFL94_09060 PF01330 RuvA N terminal domain AFL94_09060 PF07499 RuvA, C-terminal domain AFL94_09065 PF02075 Crossover junction endodeoxyribonuclease RuvC AFL94_09070 PF01709 Transcriptional regulator AFL94_09075 PF01174 SNO glutamine amidotransferase family AFL94_09085 PF01432 Peptidase family M3 AFL94_09090 PF00583 Acetyltransferase (GNAT) family AFL94_09105 PF01680 SOR/SNZ family AFL94_09110 PF03009 Glycerophosphoryl diester phosphodiesterase family AFL94_09115 PF13416 Bacterial extracellular solute-binding protein AFL94_09120 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_09125 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_09130 PF08220 DeoR-like helix-turn-helix domain AFL94_09130 PF00455 DeoR C terminal sensor domain AFL94_09135 PF13419 Haloacid dehalogenase-like hydrolase AFL94_09145 PF13732 Domain of unknown function (DUF4162) AFL94_09145 PF00005 ABC transporter AFL94_09165 PF00067 Cytochrome P450 AFL94_09170 PF00155 Aminotransferase class I and II AFL94_09175 PF00202 Aminotransferase class-III AFL94_09180 PF06968 Biotin and Thiamin Synthesis associated domain AFL94_09180 PF04055 Radical SAM superfamily AFL94_09185 PF01230 HIT domain AFL94_09190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_09190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_09190 PF03129 Anticodon binding domain AFL94_09220 PF04229 GrpB protein AFL94_09225 PF01336 OB-fold nucleic acid binding domain AFL94_09225 PF02811 PHP domain AFL94_09225 PF14579 Helix-hairpin-helix motif AFL94_09225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFL94_09225 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFL94_09245 PF07690 Major Facilitator Superfamily AFL94_09245 PF00083 Sugar (and other) transporter AFL94_09250 PF00248 Aldo/keto reductase family AFL94_09255 PF00107 Zinc-binding dehydrogenase AFL94_09255 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_09260 PF00753 Metallo-beta-lactamase superfamily AFL94_09270 PF02586 SOS response associated peptidase (SRAP) AFL94_09275 PF00462 Glutaredoxin AFL94_09305 PF00313 'Cold-shock' DNA-binding domain AFL94_09310 PF00083 Sugar (and other) transporter AFL94_09310 PF07690 Major Facilitator Superfamily AFL94_09320 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFL94_09320 PF00391 PEP-utilising enzyme, mobile domain AFL94_09325 PF00268 Ribonucleotide reductase, small chain AFL94_09330 PF00317 Ribonucleotide reductase, all-alpha domain AFL94_09330 PF08343 Ribonucleotide reductase N-terminal AFL94_09330 PF02867 Ribonucleotide reductase, barrel domain AFL94_09335 PF07972 NrdI Flavodoxin like AFL94_09345 PF01168 Alanine racemase, N-terminal domain AFL94_09350 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_09350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_09350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_09355 PF01168 Alanine racemase, N-terminal domain AFL94_09365 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_09380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_09380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_09410 PF12848 ABC transporter AFL94_09410 PF16326 ABC transporter C-terminal domain AFL94_09410 PF00005 ABC transporter AFL94_09415 PF02293 AmiS/UreI family transporter AFL94_09420 PF00890 FAD binding domain AFL94_09420 PF02910 Fumarate reductase flavoprotein C-term AFL94_09425 PF03466 LysR substrate binding domain AFL94_09425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_09450 PF00155 Aminotransferase class I and II AFL94_09455 PF00324 Amino acid permease AFL94_09475 PF01544 CorA-like Mg2+ transporter protein AFL94_09530 PF01467 Cytidylyltransferase-like AFL94_09540 PF00171 Aldehyde dehydrogenase family AFL94_09545 PF00696 Amino acid kinase family AFL94_09545 PF01472 PUA domain AFL94_09550 PF01926 50S ribosome-binding GTPase AFL94_09550 PF01018 GTP1/OBG AFL94_09550 PF09269 Domain of unknown function (DUF1967) AFL94_09555 PF01016 Ribosomal L27 protein AFL94_09560 PF00829 Ribosomal prokaryotic L21 protein AFL94_09565 PF10150 Ribonuclease E/G family AFL94_09580 PF01636 Phosphotransferase enzyme family AFL94_09600 PF00334 Nucleoside diphosphate kinase AFL94_09610 PF08245 Mur ligase middle domain AFL94_09610 PF02875 Mur ligase family, glutamate ligase domain AFL94_09615 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_09615 PF08264 Anticodon-binding domain of tRNA AFL94_09630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_09630 PF07730 Histidine kinase AFL94_09635 PF00196 Bacterial regulatory proteins, luxR family AFL94_09635 PF00072 Response regulator receiver domain AFL94_09640 PF03176 MMPL family AFL94_09650 PF01047 MarR family AFL94_09655 PF02566 OsmC-like protein AFL94_09675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_09690 PF00005 ABC transporter AFL94_09700 PF00009 Elongation factor Tu GTP binding domain AFL94_09705 PF01507 Phosphoadenosine phosphosulfate reductase family AFL94_09710 PF01507 Phosphoadenosine phosphosulfate reductase family AFL94_09715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFL94_09715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFL94_09725 PF00106 short chain dehydrogenase AFL94_09740 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_09740 PF08264 Anticodon-binding domain of tRNA AFL94_09750 PF01323 DSBA-like thioredoxin domain AFL94_09755 PF06689 ClpX C4-type zinc finger AFL94_09755 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_09755 PF07724 AAA domain (Cdc48 subfamily) AFL94_09760 PF00574 Clp protease AFL94_09765 PF00574 Clp protease AFL94_09770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_09770 PF05698 Bacterial trigger factor protein (TF) C-terminus AFL94_09770 PF05697 Bacterial trigger factor protein (TF) AFL94_09790 PF06827 Zinc finger found in FPG and IleRS AFL94_09790 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_09790 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFL94_09795 PF02502 Ribose/Galactose Isomerase AFL94_09800 PF01433 Peptidase family M1 domain AFL94_09800 PF11838 ERAP1-like C-terminal domain AFL94_09810 PF01152 Bacterial-like globin AFL94_09825 PF09278 MerR, DNA binding AFL94_09825 PF00376 MerR family regulatory protein AFL94_09835 PF12848 ABC transporter AFL94_09835 PF00005 ABC transporter AFL94_09855 PF00890 FAD binding domain AFL94_09865 PF01037 Lrp/AsnC ligand binding domain AFL94_09865 PF13404 AsnC-type helix-turn-helix domain AFL94_09870 PF01810 LysE type translocator AFL94_09875 PF00005 ABC transporter AFL94_09880 PF02361 Cobalt transport protein AFL94_09885 PF02632 BioY family AFL94_09890 PF00501 AMP-binding enzyme AFL94_09890 PF13193 AMP-binding enzyme C-terminal domain AFL94_09895 PF02803 Thiolase, C-terminal domain AFL94_09895 PF00108 Thiolase, N-terminal domain AFL94_09900 PF01883 Iron-sulfur cluster assembly protein AFL94_09905 PF01883 Iron-sulfur cluster assembly protein AFL94_09910 PF00005 ABC transporter AFL94_09915 PF01458 Uncharacterized protein family (UPF0051) AFL94_09920 PF01458 Uncharacterized protein family (UPF0051) AFL94_09930 PF00005 ABC transporter AFL94_09955 PF01040 UbiA prenyltransferase family AFL94_09960 PF02780 Transketolase, C-terminal domain AFL94_09960 PF02779 Transketolase, pyrimidine binding domain AFL94_09960 PF00456 Transketolase, thiamine diphosphate binding domain AFL94_09965 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFL94_09970 PF00342 Phosphoglucose isomerase AFL94_09975 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFL94_09975 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFL94_09985 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFL94_09990 PF01266 FAD dependent oxidoreductase AFL94_10005 PF03840 Preprotein translocase SecG subunit AFL94_10010 PF00121 Triosephosphate isomerase AFL94_10015 PF00162 Phosphoglycerate kinase AFL94_10020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFL94_10020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFL94_10025 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFL94_10025 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFL94_10030 PF02650 WhiA C-terminal HTH domain AFL94_10030 PF14527 WhiA LAGLIDADG-like domain AFL94_10030 PF10298 WhiA N-terminal LAGLIDADG-like domain AFL94_10035 PF01933 Uncharacterised protein family UPF0052 AFL94_10040 PF03668 P-loop ATPase protein family AFL94_10045 PF01541 GIY-YIG catalytic domain AFL94_10045 PF08459 UvrC Helix-hairpin-helix N-terminal AFL94_10045 PF02151 UvrB/uvrC motif AFL94_10045 PF12826 Helix-hairpin-helix motif AFL94_10050 PF01553 Acyltransferase AFL94_10055 PF13419 Haloacid dehalogenase-like hydrolase AFL94_10060 PF17755 UvrA DNA-binding domain AFL94_10060 PF17760 UvrA interaction domain AFL94_10060 PF00005 ABC transporter AFL94_10095 PF00270 DEAD/DEAH box helicase AFL94_10095 PF00271 Helicase conserved C-terminal domain AFL94_10095 PF08148 DSHCT (NUC185) domain AFL94_10145 PF00561 alpha/beta hydrolase fold AFL94_10150 PF01047 MarR family AFL94_10155 PF03741 Integral membrane protein TerC family AFL94_10160 PF17757 UvrB interaction domain AFL94_10160 PF12344 Ultra-violet resistance protein B AFL94_10160 PF04851 Type III restriction enzyme, res subunit AFL94_10160 PF00271 Helicase conserved C-terminal domain AFL94_10160 PF02151 UvrB/uvrC motif AFL94_10185 PF01121 Dephospho-CoA kinase AFL94_10195 PF09186 Domain of unknown function (DUF1949) AFL94_10195 PF01205 Uncharacterized protein family UPF0029 AFL94_10200 PF05175 Methyltransferase small domain AFL94_10220 PF00575 S1 RNA binding domain AFL94_10235 PF00476 DNA polymerase family A AFL94_10235 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFL94_10235 PF01367 5'-3' exonuclease, C-terminal SAM fold AFL94_10240 PF03061 Thioesterase superfamily AFL94_10245 PF01872 RibD C-terminal domain AFL94_10245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_10255 PF01384 Phosphate transporter family AFL94_10260 PF00072 Response regulator receiver domain AFL94_10260 PF03861 ANTAR domain AFL94_10270 PF00224 Pyruvate kinase, barrel domain AFL94_10270 PF02887 Pyruvate kinase, alpha/beta domain AFL94_10275 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_10275 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFL94_10280 PF01493 GXGXG motif AFL94_10280 PF00310 Glutamine amidotransferases class-II AFL94_10280 PF01645 Conserved region in glutamate synthase AFL94_10280 PF04898 Glutamate synthase central domain AFL94_10285 PF01790 Prolipoprotein diacylglyceryl transferase AFL94_10290 PF00290 Tryptophan synthase alpha chain AFL94_10295 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_10300 PF00218 Indole-3-glycerol phosphate synthase AFL94_10315 PF04715 Anthranilate synthase component I, N terminal region AFL94_10315 PF00425 chorismate binding enzyme AFL94_10320 PF01502 Phosphoribosyl-AMP cyclohydrolase AFL94_10330 PF00977 Histidine biosynthesis protein AFL94_10335 PF01634 ATP phosphoribosyltransferase AFL94_10335 PF08029 HisG, C-terminal domain AFL94_10340 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFL94_10345 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFL94_10350 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFL94_10350 PF00925 GTP cyclohydrolase II AFL94_10355 PF00677 Lumazine binding domain AFL94_10360 PF01872 RibD C-terminal domain AFL94_10360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_10370 PF00834 Ribulose-phosphate 3 epimerase family AFL94_10375 PF01189 16S rRNA methyltransferase RsmB/F AFL94_10375 PF01029 NusB family AFL94_10380 PF00551 Formyl transferase AFL94_10380 PF02911 Formyl transferase, C-terminal domain AFL94_10385 PF01327 Polypeptide deformylase AFL94_10440 PF03594 Benzoate membrane transport protein AFL94_10445 PF00308 Bacterial dnaA protein AFL94_10445 PF11638 DnaA N-terminal domain AFL94_10445 PF08299 Bacterial dnaA protein helix-turn-helix AFL94_10450 PF00581 Rhodanese-like domain AFL94_10455 PF02657 Fe-S metabolism associated domain AFL94_10460 PF04073 Aminoacyl-tRNA editing domain AFL94_10470 PF01641 SelR domain AFL94_10480 PF00106 short chain dehydrogenase AFL94_10485 PF01212 Beta-eliminating lyase AFL94_10500 PF02803 Thiolase, C-terminal domain AFL94_10500 PF00108 Thiolase, N-terminal domain AFL94_10505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_10505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_10505 PF00378 Enoyl-CoA hydratase/isomerase AFL94_10520 PF00248 Aldo/keto reductase family AFL94_10525 PF00764 Arginosuccinate synthase AFL94_10550 PF04167 Protein of unknown function (DUF402) AFL94_10555 PF02780 Transketolase, C-terminal domain AFL94_10555 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFL94_10555 PF02779 Transketolase, pyrimidine binding domain AFL94_10560 PF05199 GMC oxidoreductase AFL94_10600 PF00330 Aconitase family (aconitate hydratase) AFL94_10600 PF00694 Aconitase C-terminal domain AFL94_10605 PF05958 tRNA (Uracil-5-)-methyltransferase AFL94_10610 PF13520 Amino acid permease AFL94_10615 PF02254 TrkA-N domain AFL94_10615 PF02080 TrkA-C domain AFL94_10620 PF02254 TrkA-N domain AFL94_10620 PF02080 TrkA-C domain AFL94_10640 PF00692 dUTPase AFL94_10670 PF13302 Acetyltransferase (GNAT) domain AFL94_10670 PF00027 Cyclic nucleotide-binding domain AFL94_10675 PF03989 DNA gyrase C-terminal domain, beta-propeller AFL94_10675 PF00521 DNA gyrase/topoisomerase IV, subunit A AFL94_10680 PF00664 ABC transporter transmembrane region AFL94_10680 PF00005 ABC transporter AFL94_10685 PF02322 Cytochrome bd terminal oxidase subunit II AFL94_10690 PF01654 Cytochrome bd terminal oxidase subunit I AFL94_10695 PF03965 Penicillinase repressor AFL94_10705 PF00204 DNA gyrase B AFL94_10705 PF00986 DNA gyrase B subunit, carboxyl terminus AFL94_10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_10705 PF01751 Toprim domain AFL94_10715 PF04545 Sigma-70, region 4 AFL94_10715 PF04539 Sigma-70 region 3 AFL94_10715 PF04542 Sigma-70 region 2 AFL94_10715 PF00140 Sigma-70 factor, region 1.2 AFL94_10735 PF00883 Cytosol aminopeptidase family, catalytic domain AFL94_10735 PF02789 Cytosol aminopeptidase family, N-terminal domain AFL94_10740 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_10740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_10745 PF00364 Biotin-requiring enzyme AFL94_10745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_10745 PF02817 e3 binding domain AFL94_10755 PF00069 Protein kinase domain AFL94_10755 PF03793 PASTA domain AFL94_10760 PF03099 Biotin/lipoate A/B protein ligase family AFL94_10765 PF04055 Radical SAM superfamily AFL94_10765 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AFL94_10780 PF00120 Glutamine synthetase, catalytic domain AFL94_10780 PF03951 Glutamine synthetase, beta-Grasp domain AFL94_10790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_10800 PF03710 Glutamate-ammonia ligase adenylyltransferase AFL94_10800 PF08335 GlnD PII-uridylyltransferase AFL94_10805 PF03951 Glutamine synthetase, beta-Grasp domain AFL94_10805 PF00120 Glutamine synthetase, catalytic domain AFL94_10810 PF02548 Ketopantoate hydroxymethyltransferase AFL94_10820 PF00557 Metallopeptidase family M24 AFL94_10825 PF03477 ATP cone domain AFL94_10830 PF00815 Histidinol dehydrogenase AFL94_10835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFL94_10835 PF02811 PHP domain AFL94_10835 PF14579 Helix-hairpin-helix motif AFL94_10835 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFL94_10840 PF00849 RNA pseudouridylate synthase AFL94_10845 PF01252 Signal peptidase (SPase) II AFL94_10850 PF05103 DivIVA protein AFL94_10860 PF04472 Cell division protein SepF AFL94_10870 PF00091 Tubulin/FtsZ family, GTPase domain AFL94_10870 PF12327 FtsZ family, C-terminal domain AFL94_10875 PF08478 POTRA domain, FtsQ-type AFL94_10875 PF03799 Cell division protein FtsQ AFL94_10880 PF01225 Mur ligase family, catalytic domain AFL94_10880 PF02875 Mur ligase family, glutamate ligase domain AFL94_10880 PF08245 Mur ligase middle domain AFL94_10885 PF03033 Glycosyltransferase family 28 N-terminal domain AFL94_10885 PF04101 Glycosyltransferase family 28 C-terminal domain AFL94_10890 PF01098 Cell cycle protein AFL94_10895 PF08245 Mur ligase middle domain AFL94_10895 PF02875 Mur ligase family, glutamate ligase domain AFL94_10900 PF00953 Glycosyl transferase family 4 AFL94_10905 PF01225 Mur ligase family, catalytic domain AFL94_10905 PF08245 Mur ligase middle domain AFL94_10905 PF02875 Mur ligase family, glutamate ligase domain AFL94_10910 PF02875 Mur ligase family, glutamate ligase domain AFL94_10910 PF01225 Mur ligase family, catalytic domain AFL94_10910 PF08245 Mur ligase middle domain AFL94_10915 PF03717 Penicillin-binding Protein dimerisation domain AFL94_10915 PF00905 Penicillin binding protein transpeptidase domain AFL94_10925 PF01795 MraW methylase family AFL94_10930 PF02381 MraZ protein, putative antitoxin-like AFL94_10945 PF00348 Polyprenyl synthetase AFL94_10960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_10960 PF12282 Signal transduction histidine kinase AFL94_10960 PF07568 Histidine kinase AFL94_10965 PF05088 Bacterial NAD-glutamate dehydrogenase AFL94_10995 PF07516 SecA Wing and Scaffold domain AFL94_10995 PF01043 SecA preprotein cross-linking domain AFL94_10995 PF07517 SecA DEAD-like domain AFL94_11000 PF06224 Winged helix DNA-binding domain AFL94_11005 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFL94_11005 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AFL94_11010 PF00156 Phosphoribosyl transferase domain AFL94_11015 PF10646 Sporulation and spore germination AFL94_11015 PF10647 Lipoprotein LpqB beta-propeller domain AFL94_11020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_11020 PF00512 His Kinase A (phospho-acceptor) domain AFL94_11020 PF00672 HAMP domain AFL94_11025 PF00486 Transcriptional regulatory protein, C terminal AFL94_11025 PF00072 Response regulator receiver domain AFL94_11040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_11040 PF00005 ABC transporter AFL94_11045 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_11045 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11050 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_11055 PF12793 Sugar transport-related sRNA regulator N-term AFL94_11070 PF00270 DEAD/DEAH box helicase AFL94_11070 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AFL94_11070 PF17191 RecG wedge domain AFL94_11075 PF00296 Luciferase-like monooxygenase AFL94_11085 PF07732 Multicopper oxidase AFL94_11110 PF00266 Aminotransferase class-V AFL94_11120 PF00809 Pterin binding enzyme AFL94_11130 PF00781 Diacylglycerol kinase catalytic domain AFL94_11135 PF00226 DnaJ domain AFL94_11135 PF00684 DnaJ central domain AFL94_11135 PF01556 DnaJ C terminal domain AFL94_11140 PF00588 SpoU rRNA Methylase family AFL94_11155 PF01012 Electron transfer flavoprotein domain AFL94_11155 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_11160 PF01012 Electron transfer flavoprotein domain AFL94_11165 PF17820 PDZ domain AFL94_11165 PF13180 PDZ domain AFL94_11175 PF04012 PspA/IM30 family AFL94_11195 PF03699 Uncharacterised protein family (UPF0182) AFL94_11200 PF13180 PDZ domain AFL94_11200 PF05362 Lon protease (S16) C-terminal proteolytic domain AFL94_11215 PF13361 UvrD-like helicase C-terminal domain AFL94_11215 PF00580 UvrD/REP helicase N-terminal domain AFL94_11215 PF00570 HRDC domain AFL94_11220 PF00293 NUDIX domain AFL94_11220 PF09297 NADH pyrophosphatase zinc ribbon domain AFL94_11220 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AFL94_11230 PF00580 UvrD/REP helicase N-terminal domain AFL94_11230 PF13361 UvrD-like helicase C-terminal domain AFL94_11235 PF00580 UvrD/REP helicase N-terminal domain AFL94_11235 PF13361 UvrD-like helicase C-terminal domain AFL94_11250 PF00005 ABC transporter AFL94_11250 PF09383 NIL domain AFL94_11255 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11260 PF03180 NLPA lipoprotein AFL94_11265 PF13520 Amino acid permease AFL94_11270 PF00202 Aminotransferase class-III AFL94_11275 PF00490 Delta-aminolevulinic acid dehydratase AFL94_11285 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFL94_11285 PF03900 Porphobilinogen deaminase, C-terminal domain AFL94_11305 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFL94_11310 PF01488 Shikimate / quinate 5-dehydrogenase AFL94_11310 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFL94_11310 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFL94_11315 PF00440 Bacterial regulatory proteins, tetR family AFL94_11315 PF08362 YcdC-like protein, C-terminal region AFL94_11330 PF00270 DEAD/DEAH box helicase AFL94_11330 PF00271 Helicase conserved C-terminal domain AFL94_11335 PF01555 DNA methylase AFL94_11345 PF05195 Aminopeptidase P, N-terminal domain AFL94_11345 PF00557 Metallopeptidase family M24 AFL94_11355 PF03448 MgtE intracellular N domain AFL94_11355 PF00571 CBS domain AFL94_11355 PF01769 Divalent cation transporter AFL94_11365 PF10609 NUBPL iron-transfer P-loop NTPase AFL94_11365 PF01883 Iron-sulfur cluster assembly protein AFL94_11375 PF08281 Sigma-70, region 4 AFL94_11375 PF04542 Sigma-70 region 2 AFL94_11380 PF01596 O-methyltransferase AFL94_11390 PF03641 Possible lysine decarboxylase AFL94_11395 PF00005 ABC transporter AFL94_11400 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_11405 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11410 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11415 PF01546 Peptidase family M20/M25/M40 AFL94_11415 PF07687 Peptidase dimerisation domain AFL94_11420 PF14602 Hexapeptide repeat of succinyl-transferase AFL94_11420 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AFL94_11430 PF00285 Citrate synthase, C-terminal domain AFL94_11435 PF00155 Aminotransferase class I and II AFL94_11440 PF00037 4Fe-4S binding domain AFL94_11450 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFL94_11475 PF00581 Rhodanese-like domain AFL94_11475 PF00899 ThiF family AFL94_11480 PF05690 Thiazole biosynthesis protein ThiG AFL94_11510 PF12697 Alpha/beta hydrolase family AFL94_11525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_11525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_11540 PF03595 Voltage-dependent anion channel AFL94_11555 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_11560 PF01758 Sodium Bile acid symporter family AFL94_11565 PF01022 Bacterial regulatory protein, arsR family AFL94_11620 PF08768 Domain of unknown function (DUF1794) AFL94_11630 PF01479 S4 domain AFL94_11630 PF00849 RNA pseudouridylate synthase AFL94_11645 PF00535 Glycosyl transferase family 2 AFL94_11680 PF06071 Protein of unknown function (DUF933) AFL94_11680 PF01926 50S ribosome-binding GTPase AFL94_11685 PF02401 LytB protein AFL94_11690 PF02601 Exonuclease VII, large subunit AFL94_11690 PF13742 OB-fold nucleic acid binding domain AFL94_11695 PF02609 Exonuclease VII small subunit AFL94_11705 PF03976 Polyphosphate kinase 2 (PPK2) AFL94_11730 PF01037 Lrp/AsnC ligand binding domain AFL94_11740 PF13302 Acetyltransferase (GNAT) domain AFL94_11745 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFL94_11765 PF00117 Glutamine amidotransferase class-I AFL94_11765 PF00958 GMP synthase C terminal domain AFL94_11765 PF02540 NAD synthase AFL94_11780 PF00478 IMP dehydrogenase / GMP reductase domain AFL94_11805 PF00478 IMP dehydrogenase / GMP reductase domain AFL94_11805 PF00571 CBS domain AFL94_11810 PF01757 Acyltransferase family AFL94_11825 PF00118 TCP-1/cpn60 chaperonin family AFL94_11830 PF00166 Chaperonin 10 Kd subunit AFL94_11835 PF00324 Amino acid permease AFL94_11850 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFL94_11855 PF00814 Glycoprotease family AFL94_11860 PF00583 Acetyltransferase (GNAT) family AFL94_11865 PF00814 Glycoprotease family AFL94_11865 PF00583 Acetyltransferase (GNAT) family AFL94_11870 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFL94_11875 PF01168 Alanine racemase, N-terminal domain AFL94_11875 PF00842 Alanine racemase, C-terminal domain AFL94_11880 PF01741 Large-conductance mechanosensitive channel, MscL AFL94_11885 PF00485 Phosphoribulokinase / Uridine kinase family AFL94_11890 PF01380 SIS domain AFL94_11895 PF01648 4'-phosphopantetheinyl transferase superfamily AFL94_11900 PF03853 YjeF-related protein N-terminus AFL94_11900 PF01256 Carbohydrate kinase AFL94_11925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFL94_11925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFL94_11925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFL94_11930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_11930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_11930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_11930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_11935 PF00380 Ribosomal protein S9/S16 AFL94_11940 PF00572 Ribosomal protein L13 AFL94_11945 PF01416 tRNA pseudouridine synthase AFL94_11955 PF01196 Ribosomal protein L17 AFL94_11960 PF01000 RNA polymerase Rpb3/RpoA insert domain AFL94_11960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFL94_11960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFL94_11965 PF00411 Ribosomal protein S11 AFL94_11970 PF00416 Ribosomal protein S13/S18 AFL94_11975 PF01176 Translation initiation factor 1A / IF-1 AFL94_11980 PF00557 Metallopeptidase family M24 AFL94_11990 PF00344 SecY translocase AFL94_11995 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFL94_12000 PF00327 Ribosomal protein L30p/L7e AFL94_12005 PF00333 Ribosomal protein S5, N-terminal domain AFL94_12005 PF03719 Ribosomal protein S5, C-terminal domain AFL94_12010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFL94_12015 PF00347 Ribosomal protein L6 AFL94_12020 PF00410 Ribosomal protein S8 AFL94_12025 PF00673 ribosomal L5P family C-terminus AFL94_12025 PF00281 Ribosomal protein L5 AFL94_12030 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFL94_12035 PF00238 Ribosomal protein L14p/L23e AFL94_12060 PF00366 Ribosomal protein S17 AFL94_12065 PF00831 Ribosomal L29 protein AFL94_12070 PF00252 Ribosomal protein L16p/L10e AFL94_12075 PF07650 KH domain AFL94_12075 PF00189 Ribosomal protein S3, C-terminal domain AFL94_12080 PF00237 Ribosomal protein L22p/L17e AFL94_12085 PF00203 Ribosomal protein S19 AFL94_12090 PF03947 Ribosomal Proteins L2, C-terminal domain AFL94_12090 PF00181 Ribosomal Proteins L2, RNA binding domain AFL94_12095 PF00276 Ribosomal protein L23 AFL94_12100 PF00573 Ribosomal protein L4/L1 family AFL94_12105 PF00297 Ribosomal protein L3 AFL94_12110 PF00338 Ribosomal protein S10p/S20e AFL94_12120 PF03144 Elongation factor Tu domain 2 AFL94_12120 PF03143 Elongation factor Tu C-terminal domain AFL94_12120 PF00009 Elongation factor Tu GTP binding domain AFL94_12125 PF14492 Elongation Factor G, domain II AFL94_12125 PF00009 Elongation factor Tu GTP binding domain AFL94_12125 PF00679 Elongation factor G C-terminus AFL94_12125 PF03144 Elongation factor Tu domain 2 AFL94_12125 PF03764 Elongation factor G, domain IV AFL94_12130 PF00177 Ribosomal protein S7p/S5e AFL94_12135 PF00164 Ribosomal protein S12/S23 AFL94_12145 PF04998 RNA polymerase Rpb1, domain 5 AFL94_12145 PF04983 RNA polymerase Rpb1, domain 3 AFL94_12145 PF00623 RNA polymerase Rpb1, domain 2 AFL94_12145 PF04997 RNA polymerase Rpb1, domain 1 AFL94_12145 PF05000 RNA polymerase Rpb1, domain 4 AFL94_12150 PF04565 RNA polymerase Rpb2, domain 3 AFL94_12150 PF00562 RNA polymerase Rpb2, domain 6 AFL94_12150 PF04560 RNA polymerase Rpb2, domain 7 AFL94_12150 PF04561 RNA polymerase Rpb2, domain 2 AFL94_12150 PF04563 RNA polymerase beta subunit AFL94_12150 PF10385 RNA polymerase beta subunit external 1 domain AFL94_12160 PF01757 Acyltransferase family AFL94_12165 PF00542 Ribosomal protein L7/L12 C-terminal domain AFL94_12165 PF16320 Ribosomal protein L7/L12 dimerisation domain AFL94_12170 PF00466 Ribosomal protein L10 AFL94_12175 PF00687 Ribosomal protein L1p/L10e family AFL94_12180 PF00298 Ribosomal protein L11, RNA binding domain AFL94_12180 PF03946 Ribosomal protein L11, N-terminal domain AFL94_12185 PF02357 Transcription termination factor nusG AFL94_12190 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFL94_12200 PF00155 Aminotransferase class I and II AFL94_12205 PF00196 Bacterial regulatory proteins, luxR family AFL94_12205 PF00072 Response regulator receiver domain AFL94_12230 PF00365 Phosphofructokinase AFL94_12235 PF01571 Aminomethyltransferase folate-binding domain AFL94_12240 PF08768 Domain of unknown function (DUF1794) AFL94_12250 PF00486 Transcriptional regulatory protein, C terminal AFL94_12255 PF00583 Acetyltransferase (GNAT) family AFL94_12260 PF13090 Polyphosphate kinase C-terminal domain 2 AFL94_12260 PF02503 Polyphosphate kinase middle domain AFL94_12260 PF17941 Polyphosphate kinase C-terminal domain 1 AFL94_12260 PF13089 Polyphosphate kinase N-terminal domain AFL94_12265 PF00293 NUDIX domain AFL94_12265 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_12275 PF00303 Thymidylate synthase AFL94_12280 PF00186 Dihydrofolate reductase AFL94_12290 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFL94_12290 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFL94_12295 PF01565 FAD binding domain AFL94_12295 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFL94_12300 PF07690 Major Facilitator Superfamily AFL94_12310 PF13452 N-terminal half of MaoC dehydratase AFL94_12335 PF04607 Region found in RelA / SpoT proteins AFL94_12355 PF00270 DEAD/DEAH box helicase AFL94_12355 PF03880 DbpA RNA binding domain AFL94_12355 PF00271 Helicase conserved C-terminal domain AFL94_12365 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_12370 PF00571 CBS domain AFL94_12370 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_12380 PF00085 Thioredoxin AFL94_12390 PF04461 Protein of unknown function (DUF520) AFL94_12395 PF01435 Peptidase family M48 AFL94_12400 PF00892 EamA-like transporter family AFL94_12405 PF00202 Aminotransferase class-III AFL94_12410 PF00209 Sodium:neurotransmitter symporter family AFL94_12415 PF07905 Purine catabolism regulatory protein-like family AFL94_12415 PF13556 PucR C-terminal helix-turn-helix domain AFL94_12430 PF00348 Polyprenyl synthetase AFL94_12435 PF00425 chorismate binding enzyme AFL94_12445 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_12450 PF00005 ABC transporter AFL94_12455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_12465 PF18374 Enolase N-terminal domain-like AFL94_12465 PF13378 Enolase C-terminal domain-like AFL94_12480 PF02817 e3 binding domain AFL94_12480 PF00364 Biotin-requiring enzyme AFL94_12480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_12485 PF02779 Transketolase, pyrimidine binding domain AFL94_12485 PF02780 Transketolase, C-terminal domain AFL94_12490 PF00676 Dehydrogenase E1 component AFL94_12495 PF01037 Lrp/AsnC ligand binding domain AFL94_12500 PF00378 Enoyl-CoA hydratase/isomerase AFL94_12505 PF00970 Oxidoreductase FAD-binding domain AFL94_12505 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_12505 PF00175 Oxidoreductase NAD-binding domain AFL94_12510 PF01883 Iron-sulfur cluster assembly protein AFL94_12515 PF05138 Phenylacetic acid catabolic protein AFL94_12520 PF06243 Phenylacetic acid degradation B AFL94_12525 PF05138 Phenylacetic acid catabolic protein AFL94_12530 PF07681 DoxX AFL94_12535 PF00005 ABC transporter AFL94_12540 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_12545 PF00326 Prolyl oligopeptidase family AFL94_12545 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFL94_12550 PF04229 GrpB protein AFL94_12555 PF03061 Thioesterase superfamily AFL94_12575 PF00171 Aldehyde dehydrogenase family AFL94_12575 PF01575 MaoC like domain AFL94_12580 PF03061 Thioesterase superfamily AFL94_12600 PF13350 Tyrosine phosphatase family AFL94_12610 PF01184 GPR1/FUN34/yaaH family AFL94_12620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_12620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_12625 PF00378 Enoyl-CoA hydratase/isomerase AFL94_12630 PF00108 Thiolase, N-terminal domain AFL94_12630 PF02803 Thiolase, C-terminal domain AFL94_12635 PF08946 Osmosensory transporter coiled coil AFL94_12635 PF00083 Sugar (and other) transporter AFL94_12640 PF00378 Enoyl-CoA hydratase/isomerase AFL94_12645 PF13193 AMP-binding enzyme C-terminal domain AFL94_12645 PF00501 AMP-binding enzyme AFL94_12650 PF01040 UbiA prenyltransferase family AFL94_12665 PF01578 Cytochrome C assembly protein AFL94_12675 PF02683 Cytochrome C biogenesis protein transmembrane region AFL94_12680 PF00085 Thioredoxin AFL94_12685 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_12695 PF06971 Putative DNA-binding protein N-terminus AFL94_12695 PF02629 CoA binding domain AFL94_12710 PF12728 Helix-turn-helix domain AFL94_12715 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFL94_12715 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFL94_12720 PF01022 Bacterial regulatory protein, arsR family AFL94_12725 PF00850 Histone deacetylase domain AFL94_12730 PF02386 Cation transport protein AFL94_12735 PF02254 TrkA-N domain AFL94_12735 PF02080 TrkA-C domain AFL94_12740 PF01494 FAD binding domain AFL94_12745 PF03807 NADP oxidoreductase coenzyme F420-dependent AFL94_12745 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFL94_12750 PF01261 Xylose isomerase-like TIM barrel AFL94_12755 PF02541 Ppx/GppA phosphatase family AFL94_12760 PF01131 DNA topoisomerase AFL94_12760 PF01751 Toprim domain AFL94_12760 PF13368 Topoisomerase C-terminal repeat AFL94_12790 PF00271 Helicase conserved C-terminal domain AFL94_12790 PF09369 Domain of unknown function (DUF1998) AFL94_12790 PF00270 DEAD/DEAH box helicase AFL94_12820 PF00437 Type II/IV secretion system protein AFL94_12835 PF00293 NUDIX domain AFL94_12840 PF10576 Iron-sulfur binding domain of endonuclease III AFL94_12840 PF00633 Helix-hairpin-helix motif AFL94_12840 PF00730 HhH-GPD superfamily base excision DNA repair protein AFL94_12845 PF00501 AMP-binding enzyme AFL94_12845 PF16177 Acetyl-coenzyme A synthetase N-terminus AFL94_12845 PF13193 AMP-binding enzyme C-terminal domain AFL94_12855 PF01220 Dehydroquinase class II AFL94_12860 PF13180 PDZ domain AFL94_12865 PF13545 Crp-like helix-turn-helix domain AFL94_12865 PF00027 Cyclic nucleotide-binding domain AFL94_12875 PF01042 Endoribonuclease L-PSP AFL94_12880 PF00912 Transglycosylase AFL94_12880 PF00905 Penicillin binding protein transpeptidase domain AFL94_12890 PF00664 ABC transporter transmembrane region AFL94_12890 PF00005 ABC transporter AFL94_12895 PF00005 ABC transporter AFL94_12895 PF00664 ABC transporter transmembrane region AFL94_12900 PF01259 SAICAR synthetase AFL94_12905 PF02843 Phosphoribosylglycinamide synthetase, C domain AFL94_12905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFL94_12905 PF02844 Phosphoribosylglycinamide synthetase, N domain AFL94_12925 PF00156 Phosphoribosyl transferase domain AFL94_12930 PF02769 AIR synthase related protein, C-terminal domain AFL94_12930 PF00586 AIR synthase related protein, N-terminal domain AFL94_12945 PF01548 Transposase AFL94_12945 PF02371 Transposase IS116/IS110/IS902 family AFL94_12955 PF02146 Sir2 family AFL94_12965 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_12965 PF07724 AAA domain (Cdc48 subfamily) AFL94_12965 PF17871 AAA lid domain AFL94_12965 PF02861 Clp amino terminal domain, pathogenicity island component AFL94_12965 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_12975 PF03741 Integral membrane protein TerC family AFL94_12980 PF03733 Inner membrane component domain AFL94_12985 PF02390 Putative methyltransferase AFL94_12995 PF13411 MerR HTH family regulatory protein AFL94_13000 PF00226 DnaJ domain AFL94_13000 PF01556 DnaJ C terminal domain AFL94_13000 PF00684 DnaJ central domain AFL94_13005 PF01025 GrpE AFL94_13010 PF00012 Hsp70 protein AFL94_13025 PF12300 ATP-dependent RNA helicase RhlB AFL94_13025 PF00271 Helicase conserved C-terminal domain AFL94_13025 PF00270 DEAD/DEAH box helicase AFL94_13030 PF03176 MMPL family AFL94_13035 PF01047 MarR family AFL94_13040 PF01810 LysE type translocator AFL94_13045 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_13050 PF04715 Anthranilate synthase component I, N terminal region AFL94_13050 PF00117 Glutamine amidotransferase class-I AFL94_13050 PF00425 chorismate binding enzyme AFL94_13055 PF00561 alpha/beta hydrolase fold AFL94_13060 PF13091 PLD-like domain AFL94_13060 PF13396 Phospholipase_D-nuclease N-terminal AFL94_13070 PF00005 ABC transporter AFL94_13075 PF09819 ABC-type cobalt transport system, permease component AFL94_13085 PF03334 Na+/H+ antiporter subunit AFL94_13095 PF01899 Na+/H+ ion antiporter subunit AFL94_13110 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFL94_13110 PF00361 Proton-conducting membrane transporter AFL94_13110 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AFL94_13110 PF13244 Domain of unknown function (DUF4040) AFL94_13120 PF00692 dUTPase AFL94_13135 PF05683 Fumarase C-terminus AFL94_13135 PF05681 Fumarate hydratase (Fumerase) AFL94_13155 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_13160 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_13165 PF00005 ABC transporter AFL94_13170 PF05872 Bacterial protein of unknown function (DUF853) AFL94_13180 PF07690 Major Facilitator Superfamily AFL94_13185 PF02683 Cytochrome C biogenesis protein transmembrane region AFL94_13185 PF00578 AhpC/TSA family AFL94_13185 PF17991 Thioredoxin like C-terminal domain AFL94_13195 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AFL94_13195 PF05425 Copper resistance protein D AFL94_13205 PF04314 Copper chaperone PCu(A)C AFL94_13220 PF00216 Bacterial DNA-binding protein AFL94_13225 PF00216 Bacterial DNA-binding protein AFL94_13240 PF00253 Ribosomal protein S14p/S29e AFL94_13245 PF00471 Ribosomal protein L33 AFL94_13250 PF00830 Ribosomal L28 family AFL94_13260 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_13265 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_13270 PF00005 ABC transporter AFL94_13270 PF08402 TOBE domain AFL94_13285 PF01037 Lrp/AsnC ligand binding domain AFL94_13290 PF00202 Aminotransferase class-III AFL94_13300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_13300 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_13300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_13325 PF00171 Aldehyde dehydrogenase family AFL94_13330 PF00202 Aminotransferase class-III AFL94_13340 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_13390 PF00171 Aldehyde dehydrogenase family AFL94_13405 PF00440 Bacterial regulatory proteins, tetR family AFL94_13405 PF13977 BetI-type transcriptional repressor, C-terminal AFL94_13410 PF01179 Copper amine oxidase, enzyme domain AFL94_13410 PF02728 Copper amine oxidase, N3 domain AFL94_13420 PF01266 FAD dependent oxidoreductase AFL94_13425 PF00171 Aldehyde dehydrogenase family AFL94_13455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_13460 PF01769 Divalent cation transporter AFL94_13460 PF03448 MgtE intracellular N domain AFL94_13460 PF00571 CBS domain AFL94_13465 PF03315 Serine dehydratase beta chain AFL94_13465 PF03313 Serine dehydratase alpha chain AFL94_13470 PF00464 Serine hydroxymethyltransferase AFL94_13475 PF01597 Glycine cleavage H-protein AFL94_13480 PF01571 Aminomethyltransferase folate-binding domain AFL94_13480 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFL94_13485 PF02347 Glycine cleavage system P-protein AFL94_13500 PF13520 Amino acid permease AFL94_13505 PF00075 RNase H AFL94_13515 PF13409 Glutathione S-transferase, N-terminal domain AFL94_13530 PF00005 ABC transporter AFL94_13530 PF00664 ABC transporter transmembrane region AFL94_13540 PF00005 ABC transporter AFL94_13545 PF01032 FecCD transport family AFL94_13550 PF01032 FecCD transport family AFL94_13555 PF00753 Metallo-beta-lactamase superfamily AFL94_13555 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFL94_13570 PF00005 ABC transporter AFL94_13595 PF02567 Phenazine biosynthesis-like protein AFL94_13600 PF07690 Major Facilitator Superfamily AFL94_13615 PF17754 MftR C-terminal domain AFL94_13615 PF00440 Bacterial regulatory proteins, tetR family AFL94_13620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_13620 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_13620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_13625 PF00270 DEAD/DEAH box helicase AFL94_13625 PF04408 Helicase associated domain (HA2) AFL94_13625 PF00271 Helicase conserved C-terminal domain AFL94_13625 PF08482 ATP-dependent helicase C-terminal AFL94_13630 PF00561 alpha/beta hydrolase fold AFL94_13635 PF00248 Aldo/keto reductase family AFL94_13640 PF00171 Aldehyde dehydrogenase family AFL94_13660 PF00196 Bacterial regulatory proteins, luxR family AFL94_13670 PF00210 Ferritin-like domain AFL94_13675 PF16921 Tex protein YqgF-like domain AFL94_13675 PF09371 Tex-like protein N-terminal domain AFL94_13675 PF00575 S1 RNA binding domain AFL94_13675 PF17674 HHH domain AFL94_13690 PF00326 Prolyl oligopeptidase family AFL94_13690 PF07676 WD40-like Beta Propeller Repeat AFL94_13700 PF03458 UPF0126 domain AFL94_13715 PF07690 Major Facilitator Superfamily AFL94_13720 PF00313 'Cold-shock' DNA-binding domain AFL94_13725 PF00296 Luciferase-like monooxygenase AFL94_13750 PF03466 LysR substrate binding domain AFL94_13750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_13755 PF00378 Enoyl-CoA hydratase/isomerase AFL94_13755 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_13755 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_13760 PF01645 Conserved region in glutamate synthase AFL94_13765 PF00005 ABC transporter AFL94_13765 PF00664 ABC transporter transmembrane region AFL94_13770 PF00005 ABC transporter AFL94_13770 PF00664 ABC transporter transmembrane region AFL94_13780 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFL94_13790 PF07730 Histidine kinase AFL94_13790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_13795 PF00196 Bacterial regulatory proteins, luxR family AFL94_13795 PF00072 Response regulator receiver domain AFL94_13800 PF00005 ABC transporter AFL94_13800 PF13732 Domain of unknown function (DUF4162) AFL94_13820 PF00753 Metallo-beta-lactamase superfamily AFL94_13830 PF13411 MerR HTH family regulatory protein AFL94_13835 PF00011 Hsp20/alpha crystallin family AFL94_13850 PF03466 LysR substrate binding domain AFL94_13850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_13855 PF00474 Sodium:solute symporter family AFL94_13860 PF08338 Domain of unknown function (DUF1731) AFL94_13860 PF01370 NAD dependent epimerase/dehydratase family AFL94_13885 PF07687 Peptidase dimerisation domain AFL94_13885 PF01546 Peptidase family M20/M25/M40 AFL94_13895 PF00480 ROK family AFL94_13910 PF13823 Alcohol dehydrogenase GroES-associated AFL94_13910 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_13910 PF00107 Zinc-binding dehydrogenase AFL94_13920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_13920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_13930 PF03576 Peptidase family S58 AFL94_13935 PF14759 Reductase C-terminal AFL94_13935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_13940 PF00754 F5/8 type C domain AFL94_13940 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AFL94_13940 PF13088 BNR repeat-like domain AFL94_13945 PF05922 Peptidase inhibitor I9 AFL94_13945 PF00082 Subtilase family AFL94_13955 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_13955 PF00107 Zinc-binding dehydrogenase AFL94_13980 PF07690 Major Facilitator Superfamily AFL94_13990 PF13532 2OG-Fe(II) oxygenase superfamily AFL94_13995 PF00294 pfkB family carbohydrate kinase AFL94_14010 PF00210 Ferritin-like domain AFL94_14025 PF00221 Aromatic amino acid lyase AFL94_14030 PF02261 Aspartate decarboxylase AFL94_14050 PF05025 RbsD / FucU transport protein family AFL94_14055 PF00294 pfkB family carbohydrate kinase AFL94_14060 PF13407 Periplasmic binding protein domain AFL94_14065 PF02653 Branched-chain amino acid transport system / permease component AFL94_14070 PF00005 ABC transporter AFL94_14075 PF00356 Bacterial regulatory proteins, lacI family AFL94_14080 PF18357 Diphteria toxin repressor SH3 domain AFL94_14080 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFL94_14080 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_14085 PF13419 Haloacid dehalogenase-like hydrolase AFL94_14090 PF00392 Bacterial regulatory proteins, gntR family AFL94_14090 PF07702 UTRA domain AFL94_14105 PF00005 ABC transporter AFL94_14110 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14115 PF00950 ABC 3 transport family AFL94_14120 PF00005 ABC transporter AFL94_14125 PF01297 Zinc-uptake complex component A periplasmic AFL94_14150 PF13411 MerR HTH family regulatory protein AFL94_14150 PF07739 TipAS antibiotic-recognition domain AFL94_14170 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_14185 PF01593 Flavin containing amine oxidoreductase AFL94_14210 PF02080 TrkA-C domain AFL94_14210 PF02254 TrkA-N domain AFL94_14215 PF02386 Cation transport protein AFL94_14225 PF01037 Lrp/AsnC ligand binding domain AFL94_14240 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_14240 PF14759 Reductase C-terminal AFL94_14245 PF00355 Rieske [2Fe-2S] domain AFL94_14280 PF00392 Bacterial regulatory proteins, gntR family AFL94_14280 PF07702 UTRA domain AFL94_14285 PF02652 L-lactate permease AFL94_14290 PF02754 Cysteine-rich domain AFL94_14295 PF11870 Domain of unknown function (DUF3390) AFL94_14295 PF02589 LUD domain AFL94_14295 PF13183 4Fe-4S dicluster domain AFL94_14300 PF02589 LUD domain AFL94_14315 PF04264 YceI-like domain AFL94_14325 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14330 PF00571 CBS domain AFL94_14330 PF00005 ABC transporter AFL94_14335 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14340 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_14345 PF01235 Sodium:alanine symporter family AFL94_14350 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_14355 PF00324 Amino acid permease AFL94_14370 PF00390 Malic enzyme, N-terminal domain AFL94_14370 PF03949 Malic enzyme, NAD binding domain AFL94_14380 PF00155 Aminotransferase class I and II AFL94_14390 PF03061 Thioesterase superfamily AFL94_14395 PF01614 Bacterial transcriptional regulator AFL94_14395 PF09339 IclR helix-turn-helix domain AFL94_14400 PF01261 Xylose isomerase-like TIM barrel AFL94_14405 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFL94_14405 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_14410 PF00083 Sugar (and other) transporter AFL94_14410 PF07690 Major Facilitator Superfamily AFL94_14420 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_14420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_14425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_14425 PF03466 LysR substrate binding domain AFL94_14430 PF00083 Sugar (and other) transporter AFL94_14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_14435 PF03466 LysR substrate binding domain AFL94_14440 PF03601 Conserved hypothetical protein 698 AFL94_14455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_14455 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_14455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_14460 PF02656 Domain of unknown function (DUF202) AFL94_14465 PF02656 Domain of unknown function (DUF202) AFL94_14470 PF03466 LysR substrate binding domain AFL94_14470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_14475 PF00083 Sugar (and other) transporter AFL94_14475 PF07690 Major Facilitator Superfamily AFL94_14480 PF12706 Beta-lactamase superfamily domain AFL94_14485 PF01638 HxlR-like helix-turn-helix AFL94_14495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_14500 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_14510 PF00005 ABC transporter AFL94_14525 PF00501 AMP-binding enzyme AFL94_14525 PF13193 AMP-binding enzyme C-terminal domain AFL94_14540 PF07690 Major Facilitator Superfamily AFL94_14590 PF14031 Putative serine dehydratase domain AFL94_14595 PF01614 Bacterial transcriptional regulator AFL94_14595 PF09339 IclR helix-turn-helix domain AFL94_14605 PF01144 Coenzyme A transferase AFL94_14610 PF01144 Coenzyme A transferase AFL94_14615 PF02803 Thiolase, C-terminal domain AFL94_14615 PF00108 Thiolase, N-terminal domain AFL94_14620 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_14625 PF00149 Calcineurin-like phosphoesterase AFL94_14630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFL94_14630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFL94_14635 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_14635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_14635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_14650 PF07729 FCD domain AFL94_14650 PF00392 Bacterial regulatory proteins, gntR family AFL94_14660 PF00206 Lyase AFL94_14660 PF10415 Fumarase C C-terminus AFL94_14665 PF00324 Amino acid permease AFL94_14670 PF00326 Prolyl oligopeptidase family AFL94_14670 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AFL94_14670 PF07676 WD40-like Beta Propeller Repeat AFL94_14695 PF02817 e3 binding domain AFL94_14695 PF00364 Biotin-requiring enzyme AFL94_14695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_14700 PF02779 Transketolase, pyrimidine binding domain AFL94_14700 PF02780 Transketolase, C-terminal domain AFL94_14705 PF00676 Dehydrogenase E1 component AFL94_14710 PF00155 Aminotransferase class I and II AFL94_14715 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AFL94_14730 PF08328 Adenylosuccinate lyase C-terminal AFL94_14730 PF00206 Lyase AFL94_14735 PF07690 Major Facilitator Superfamily AFL94_14740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFL94_14740 PF00384 Molybdopterin oxidoreductase AFL94_14740 PF01568 Molydopterin dinucleotide binding domain AFL94_14745 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFL94_14745 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_14745 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFL94_14745 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFL94_14745 PF04324 BFD-like [2Fe-2S] binding domain AFL94_14755 PF04324 BFD-like [2Fe-2S] binding domain AFL94_14755 PF13806 Rieske-like [2Fe-2S] domain AFL94_14755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_14755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFL94_14755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFL94_14755 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFL94_14760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFL94_14760 PF14824 Sirohaem biosynthesis protein central AFL94_14760 PF10414 Sirohaem synthase dimerisation region AFL94_14770 PF00248 Aldo/keto reductase family AFL94_14775 PF00392 Bacterial regulatory proteins, gntR family AFL94_14775 PF07729 FCD domain AFL94_14780 PF02913 FAD linked oxidases, C-terminal domain AFL94_14780 PF01565 FAD binding domain AFL94_14790 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFL94_14790 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFL94_14795 PF01799 [2Fe-2S] binding domain AFL94_14795 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_14800 PF00860 Permease family AFL94_14805 PF01568 Molydopterin dinucleotide binding domain AFL94_14805 PF00384 Molybdopterin oxidoreductase AFL94_14810 PF02634 FdhD/NarQ family AFL94_14825 PF13193 AMP-binding enzyme C-terminal domain AFL94_14825 PF00501 AMP-binding enzyme AFL94_14840 PF00196 Bacterial regulatory proteins, luxR family AFL94_14840 PF00072 Response regulator receiver domain AFL94_14845 PF07730 Histidine kinase AFL94_14855 PF00005 ABC transporter AFL94_14860 PF09335 SNARE associated Golgi protein AFL94_14875 PF05195 Aminopeptidase P, N-terminal domain AFL94_14875 PF00557 Metallopeptidase family M24 AFL94_14880 PF01979 Amidohydrolase family AFL94_14885 PF00561 alpha/beta hydrolase fold AFL94_14900 PF00155 Aminotransferase class I and II AFL94_14905 PF02627 Carboxymuconolactone decarboxylase family AFL94_14920 PF04055 Radical SAM superfamily AFL94_14925 PF01494 FAD binding domain AFL94_14930 PF13649 Methyltransferase domain AFL94_14935 PF02797 Chalcone and stilbene synthases, C-terminal domain AFL94_14935 PF00195 Chalcone and stilbene synthases, N-terminal domain AFL94_14960 PF01266 FAD dependent oxidoreductase AFL94_14970 PF04371 Porphyromonas-type peptidyl-arginine deiminase AFL94_14975 PF00795 Carbon-nitrogen hydrolase AFL94_15015 PF04960 Glutaminase AFL94_15020 PF03061 Thioesterase superfamily AFL94_15045 PF00672 HAMP domain AFL94_15045 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AFL94_15045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_15045 PF07730 Histidine kinase AFL94_15065 PF04012 PspA/IM30 family AFL94_15070 PF05544 Proline racemase AFL94_15085 PF07976 Phenol hydroxylase, C-terminal dimerisation domain AFL94_15085 PF01494 FAD binding domain AFL94_15110 PF07690 Major Facilitator Superfamily AFL94_15135 PF02583 Metal-sensitive transcriptional repressor AFL94_15145 PF00403 Heavy-metal-associated domain AFL94_15160 PF00324 Amino acid permease AFL94_15165 PF05199 GMC oxidoreductase AFL94_15165 PF00732 GMC oxidoreductase AFL94_15170 PF01872 RibD C-terminal domain AFL94_15175 PF13520 Amino acid permease AFL94_15180 PF01329 Pterin 4 alpha carbinolamine dehydratase AFL94_15200 PF03737 Aldolase/RraA AFL94_15205 PF13520 Amino acid permease AFL94_15220 PF01070 FMN-dependent dehydrogenase AFL94_15225 PF00083 Sugar (and other) transporter AFL94_15225 PF07690 Major Facilitator Superfamily AFL94_15230 PF07729 FCD domain AFL94_15230 PF00392 Bacterial regulatory proteins, gntR family AFL94_15235 PF01554 MatE AFL94_15245 PF07690 Major Facilitator Superfamily AFL94_15250 PF02517 CPBP intramembrane metalloprotease AFL94_15255 PF07690 Major Facilitator Superfamily AFL94_15260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_15265 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_15270 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_15270 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_15275 PF00005 ABC transporter AFL94_15275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_15280 PF00230 Major intrinsic protein AFL94_15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_15295 PF03466 LysR substrate binding domain AFL94_15305 PF01012 Electron transfer flavoprotein domain AFL94_15305 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_15310 PF01012 Electron transfer flavoprotein domain AFL94_15335 PF13193 AMP-binding enzyme C-terminal domain AFL94_15335 PF00501 AMP-binding enzyme AFL94_15345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_15345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_15350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_15350 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_15350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_15385 PF00011 Hsp20/alpha crystallin family AFL94_15395 PF00171 Aldehyde dehydrogenase family AFL94_15415 PF00440 Bacterial regulatory proteins, tetR family AFL94_15415 PF17925 Tetracyclin repressor-like, C-terminal domain AFL94_15420 PF13607 Succinyl-CoA ligase like flavodoxin domain AFL94_15420 PF00583 Acetyltransferase (GNAT) family AFL94_15420 PF13380 CoA binding domain AFL94_15425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_15425 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_15425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_15430 PF00005 ABC transporter AFL94_15430 PF00664 ABC transporter transmembrane region AFL94_15435 PF00005 ABC transporter AFL94_15435 PF00664 ABC transporter transmembrane region AFL94_15450 PF03965 Penicillinase repressor AFL94_15455 PF01435 Peptidase family M48 AFL94_15465 PF03466 LysR substrate binding domain AFL94_15465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_15470 PF08946 Osmosensory transporter coiled coil AFL94_15470 PF00083 Sugar (and other) transporter AFL94_15475 PF01546 Peptidase family M20/M25/M40 AFL94_15480 PF01425 Amidase AFL94_15495 PF01329 Pterin 4 alpha carbinolamine dehydratase AFL94_15505 PF04239 Protein of unknown function (DUF421) AFL94_15510 PF13520 Amino acid permease AFL94_15520 PF00857 Isochorismatase family AFL94_15550 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_15550 PF13823 Alcohol dehydrogenase GroES-associated AFL94_15550 PF00107 Zinc-binding dehydrogenase AFL94_15555 PF02735 Ku70/Ku80 beta-barrel domain AFL94_15560 PF01068 ATP dependent DNA ligase domain AFL94_15560 PF04679 ATP dependent DNA ligase C terminal region AFL94_15560 PF13298 DNA polymerase Ligase (LigD) AFL94_15570 PF00171 Aldehyde dehydrogenase family AFL94_15580 PF02585 GlcNAc-PI de-N-acetylase AFL94_15590 PF00578 AhpC/TSA family AFL94_15595 PF03441 FAD binding domain of DNA photolyase AFL94_15595 PF00875 DNA photolyase AFL94_15620 PF00171 Aldehyde dehydrogenase family AFL94_15625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_15625 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_15625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_15630 PF07969 Amidohydrolase family AFL94_15635 PF03466 LysR substrate binding domain AFL94_15635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_15640 PF07690 Major Facilitator Superfamily AFL94_15640 PF00083 Sugar (and other) transporter AFL94_15650 PF13556 PucR C-terminal helix-turn-helix domain AFL94_15650 PF07905 Purine catabolism regulatory protein-like family AFL94_15650 PF17853 GGDEF-like domain AFL94_15655 PF01968 Hydantoinase/oxoprolinase AFL94_15655 PF05378 Hydantoinase/oxoprolinase N-terminal region AFL94_15660 PF02538 Hydantoinase B/oxoprolinase AFL94_15670 PF03852 DNA mismatch endonuclease Vsr AFL94_15690 PF00145 C-5 cytosine-specific DNA methylase AFL94_15740 PF12558 ATP-binding cassette cobalt transporter AFL94_15740 PF00005 ABC transporter AFL94_15755 PF01156 Inosine-uridine preferring nucleoside hydrolase AFL94_15770 PF01268 Formate--tetrahydrofolate ligase AFL94_15790 PF01614 Bacterial transcriptional regulator AFL94_15790 PF09339 IclR helix-turn-helix domain AFL94_15795 PF00067 Cytochrome P450 AFL94_15800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFL94_15800 PF02896 PEP-utilising enzyme, TIM barrel domain AFL94_15800 PF00391 PEP-utilising enzyme, mobile domain AFL94_15805 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFL94_15805 PF00391 PEP-utilising enzyme, mobile domain AFL94_15815 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_15820 PF14759 Reductase C-terminal AFL94_15820 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_15830 PF00171 Aldehyde dehydrogenase family AFL94_15835 PF04960 Glutaminase AFL94_15855 PF01595 Cyclin M transmembrane N-terminal domain AFL94_15855 PF00571 CBS domain AFL94_15860 PF03471 Transporter associated domain AFL94_15860 PF01595 Cyclin M transmembrane N-terminal domain AFL94_15860 PF00571 CBS domain AFL94_15865 PF01593 Flavin containing amine oxidoreductase AFL94_15870 PF03992 Antibiotic biosynthesis monooxygenase AFL94_15875 PF01757 Acyltransferase family AFL94_15885 PF00486 Transcriptional regulatory protein, C terminal AFL94_15885 PF00072 Response regulator receiver domain AFL94_15890 PF00672 HAMP domain AFL94_15890 PF00512 His Kinase A (phospho-acceptor) domain AFL94_15890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_15905 PF03601 Conserved hypothetical protein 698 AFL94_15925 PF03631 Virulence factor BrkB AFL94_15935 PF01979 Amidohydrolase family AFL94_15940 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_15940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_15940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_15945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_15945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_15950 PF01261 Xylose isomerase-like TIM barrel AFL94_15955 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFL94_15960 PF01177 Asp/Glu/Hydantoin racemase AFL94_15980 PF13302 Acetyltransferase (GNAT) domain AFL94_15985 PF01497 Periplasmic binding protein AFL94_15990 PF01032 FecCD transport family AFL94_15995 PF01032 FecCD transport family AFL94_16000 PF00005 ABC transporter AFL94_16020 PF00950 ABC 3 transport family AFL94_16025 PF00005 ABC transporter AFL94_16035 PF07690 Major Facilitator Superfamily AFL94_16045 PF01039 Carboxyl transferase domain AFL94_16050 PF02785 Biotin carboxylase C-terminal domain AFL94_16050 PF00364 Biotin-requiring enzyme AFL94_16050 PF00289 Biotin carboxylase, N-terminal domain AFL94_16050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_16060 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_16090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16090 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16090 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_16095 PF00561 alpha/beta hydrolase fold AFL94_16100 PF02595 Glycerate kinase family AFL94_16115 PF01740 STAS domain AFL94_16115 PF00916 Sulfate permease family AFL94_16125 PF00989 PAS fold AFL94_16125 PF00990 Diguanylate cyclase, GGDEF domain AFL94_16125 PF01590 GAF domain AFL94_16125 PF00563 EAL domain AFL94_16135 PF00535 Glycosyl transferase family 2 AFL94_16140 PF13193 AMP-binding enzyme C-terminal domain AFL94_16140 PF00501 AMP-binding enzyme AFL94_16165 PF00551 Formyl transferase AFL94_16170 PF04268 Sarcosine oxidase, gamma subunit family AFL94_16175 PF17806 Sarcosine oxidase A3 domain AFL94_16175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_16175 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFL94_16175 PF01571 Aminomethyltransferase folate-binding domain AFL94_16180 PF04267 Sarcosine oxidase, delta subunit family AFL94_16185 PF01266 FAD dependent oxidoreductase AFL94_16195 PF07729 FCD domain AFL94_16195 PF00392 Bacterial regulatory proteins, gntR family AFL94_16205 PF02633 Creatinine amidohydrolase AFL94_16210 PF02028 BCCT, betaine/carnitine/choline family transporter AFL94_16215 PF00557 Metallopeptidase family M24 AFL94_16215 PF01321 Creatinase/Prolidase N-terminal domain AFL94_16220 PF08946 Osmosensory transporter coiled coil AFL94_16220 PF00083 Sugar (and other) transporter AFL94_16225 PF00083 Sugar (and other) transporter AFL94_16225 PF08946 Osmosensory transporter coiled coil AFL94_16230 PF01614 Bacterial transcriptional regulator AFL94_16230 PF09339 IclR helix-turn-helix domain AFL94_16240 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AFL94_16245 PF00480 ROK family AFL94_16250 PF00701 Dihydrodipicolinate synthetase family AFL94_16255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_16255 PF00005 ABC transporter AFL94_16260 PF00005 ABC transporter AFL94_16260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_16265 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_16270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_16275 PF00392 Bacterial regulatory proteins, gntR family AFL94_16275 PF07729 FCD domain AFL94_16280 PF01012 Electron transfer flavoprotein domain AFL94_16285 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_16285 PF01012 Electron transfer flavoprotein domain AFL94_16305 PF09339 IclR helix-turn-helix domain AFL94_16305 PF01614 Bacterial transcriptional regulator AFL94_16310 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_16320 PF00682 HMGL-like AFL94_16320 PF07836 DmpG-like communication domain AFL94_16325 PF01613 Flavin reductase like domain AFL94_16350 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_16350 PF01012 Electron transfer flavoprotein domain AFL94_16355 PF01012 Electron transfer flavoprotein domain AFL94_16370 PF00378 Enoyl-CoA hydratase/isomerase AFL94_16375 PF01144 Coenzyme A transferase AFL94_16385 PF03060 Nitronate monooxygenase AFL94_16405 PF07690 Major Facilitator Superfamily AFL94_16410 PF00108 Thiolase, N-terminal domain AFL94_16410 PF02803 Thiolase, C-terminal domain AFL94_16420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16420 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_16420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16425 PF00378 Enoyl-CoA hydratase/isomerase AFL94_16430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16430 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_16435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16435 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_16435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16455 PF01144 Coenzyme A transferase AFL94_16465 PF02803 Thiolase, C-terminal domain AFL94_16465 PF00108 Thiolase, N-terminal domain AFL94_16485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_16515 PF02796 Helix-turn-helix domain of resolvase AFL94_16515 PF00239 Resolvase, N terminal domain AFL94_16530 PF01638 HxlR-like helix-turn-helix AFL94_16570 PF01551 Peptidase family M23 AFL94_16570 PF01464 Transglycosylase SLT domain AFL94_16570 PF10145 Phage-related minor tail protein AFL94_16585 PF01381 Helix-turn-helix AFL94_16590 PF01613 Flavin reductase like domain AFL94_16595 PF00772 DnaB-like helicase N terminal domain AFL94_16595 PF03796 DnaB-like helicase C terminal domain AFL94_16605 PF07690 Major Facilitator Superfamily AFL94_16620 PF05726 Pirin C-terminal cupin domain AFL94_16620 PF02678 Pirin AFL94_16625 PF01047 MarR family AFL94_16675 PF00576 HIUase/Transthyretin family AFL94_16680 PF01014 Uricase AFL94_16685 PF00860 Permease family AFL94_16705 PF00324 Amino acid permease AFL94_16710 PF00795 Carbon-nitrogen hydrolase AFL94_16730 PF00106 short chain dehydrogenase AFL94_16745 PF07690 Major Facilitator Superfamily AFL94_16750 PF00324 Amino acid permease AFL94_16760 PF00480 ROK family AFL94_16770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16780 PF00294 pfkB family carbohydrate kinase AFL94_16790 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_16790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_16790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_16795 PF00171 Aldehyde dehydrogenase family AFL94_16800 PF01261 Xylose isomerase-like TIM barrel AFL94_16805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16810 PF01261 Xylose isomerase-like TIM barrel AFL94_16815 PF00083 Sugar (and other) transporter AFL94_16820 PF00582 Universal stress protein family AFL94_16825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16825 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16830 PF00356 Bacterial regulatory proteins, lacI family AFL94_16835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16840 PF01261 Xylose isomerase-like TIM barrel AFL94_16845 PF04962 KduI/IolB family AFL94_16855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16860 PF00356 Bacterial regulatory proteins, lacI family AFL94_16870 PF02653 Branched-chain amino acid transport system / permease component AFL94_16875 PF00005 ABC transporter AFL94_16880 PF00356 Bacterial regulatory proteins, lacI family AFL94_16885 PF01261 Xylose isomerase-like TIM barrel AFL94_16890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16895 PF13407 Periplasmic binding protein domain AFL94_16900 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16900 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16910 PF00440 Bacterial regulatory proteins, tetR family AFL94_16910 PF16859 Tetracyclin repressor-like, C-terminal domain AFL94_16920 PF00005 ABC transporter AFL94_16920 PF00664 ABC transporter transmembrane region AFL94_16925 PF00890 FAD binding domain AFL94_16935 PF01614 Bacterial transcriptional regulator AFL94_16935 PF09339 IclR helix-turn-helix domain AFL94_16940 PF00390 Malic enzyme, N-terminal domain AFL94_16940 PF03949 Malic enzyme, NAD binding domain AFL94_16955 PF05899 Protein of unknown function (DUF861) AFL94_16955 PF07883 Cupin domain AFL94_16970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_16980 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16985 PF12697 Alpha/beta hydrolase family AFL94_16990 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_16990 PF00970 Oxidoreductase FAD-binding domain AFL94_16990 PF00175 Oxidoreductase NAD-binding domain AFL94_17000 PF00355 Rieske [2Fe-2S] domain AFL94_17005 PF00890 FAD binding domain AFL94_17010 PF00378 Enoyl-CoA hydratase/isomerase AFL94_17010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_17010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_17015 PF00501 AMP-binding enzyme AFL94_17015 PF13193 AMP-binding enzyme C-terminal domain AFL94_17025 PF00005 ABC transporter AFL94_17035 PF13276 HTH-like domain AFL94_17035 PF13333 Integrase core domain AFL94_17035 PF00665 Integrase core domain AFL94_17055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFL94_17055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFL94_17060 PF00083 Sugar (and other) transporter AFL94_17060 PF07690 Major Facilitator Superfamily AFL94_17075 PF00665 Integrase core domain AFL94_17075 PF13276 HTH-like domain AFL94_17075 PF13333 Integrase core domain AFL94_17095 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_17100 PF01758 Sodium Bile acid symporter family AFL94_17105 PF01022 Bacterial regulatory protein, arsR family AFL94_17115 PF17932 Tetracyclin repressor-like, C-terminal domain AFL94_17115 PF00440 Bacterial regulatory proteins, tetR family AFL94_17120 PF00561 alpha/beta hydrolase fold AFL94_17125 PF04303 PrpF protein AFL94_17130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_17130 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_17140 PF00355 Rieske [2Fe-2S] domain AFL94_17150 PF07690 Major Facilitator Superfamily AFL94_17155 PF07690 Major Facilitator Superfamily AFL94_17160 PF02803 Thiolase, C-terminal domain AFL94_17160 PF00108 Thiolase, N-terminal domain AFL94_17185 PF01548 Transposase AFL94_17185 PF02371 Transposase IS116/IS110/IS902 family AFL94_17190 PF01548 Transposase AFL94_17190 PF02371 Transposase IS116/IS110/IS902 family AFL94_17210 PF01527 Transposase AFL94_17215 PF13276 HTH-like domain AFL94_17215 PF00665 Integrase core domain AFL94_17275 PF01636 Phosphotransferase enzyme family AFL94_17280 PF00313 'Cold-shock' DNA-binding domain AFL94_17290 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFL94_17295 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AFL94_17300 PF00589 Phage integrase family AFL94_17300 PF13495 Phage integrase, N-terminal SAM-like domain AFL94_17330 PF00781 Diacylglycerol kinase catalytic domain AFL94_17335 PF02796 Helix-turn-helix domain of resolvase AFL94_17335 PF00239 Resolvase, N terminal domain AFL94_17350 PF13426 PAS domain AFL94_17350 PF00158 Sigma-54 interaction domain AFL94_17350 PF02954 Bacterial regulatory protein, Fis family AFL94_17355 PF13193 AMP-binding enzyme C-terminal domain AFL94_17355 PF00501 AMP-binding enzyme AFL94_17365 PF07995 Glucose / Sorbosone dehydrogenase AFL94_17370 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AFL94_17370 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AFL94_17400 PF08543 Phosphomethylpyrimidine kinase AFL94_17405 PF03948 Ribosomal protein L9, C-terminal domain AFL94_17405 PF01281 Ribosomal protein L9, N-terminal domain AFL94_17410 PF01084 Ribosomal protein S18 AFL94_17415 PF00436 Single-strand binding protein family AFL94_17420 PF01250 Ribosomal protein S6 AFL94_17425 PF01757 Acyltransferase family AFL94_17430 PF01266 FAD dependent oxidoreductase AFL94_17445 PF02127 Aminopeptidase I zinc metalloprotease (M18) AFL94_17455 PF00072 Response regulator receiver domain AFL94_17455 PF00196 Bacterial regulatory proteins, luxR family AFL94_17460 PF07730 Histidine kinase AFL94_17460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_17470 PF00005 ABC transporter AFL94_17495 PF13193 AMP-binding enzyme C-terminal domain AFL94_17495 PF00501 AMP-binding enzyme AFL94_17505 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_17525 PF01494 FAD binding domain AFL94_17530 PF00171 Aldehyde dehydrogenase family AFL94_17545 PF07690 Major Facilitator Superfamily AFL94_17555 PF00005 ABC transporter AFL94_17560 PF02653 Branched-chain amino acid transport system / permease component AFL94_17570 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_17570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_17575 PF01008 Initiation factor 2 subunit family AFL94_17575 PF03061 Thioesterase superfamily AFL94_17580 PF00108 Thiolase, N-terminal domain AFL94_17580 PF02803 Thiolase, C-terminal domain AFL94_17585 PF00440 Bacterial regulatory proteins, tetR family AFL94_17585 PF16859 Tetracyclin repressor-like, C-terminal domain AFL94_17600 PF14525 AraC-binding-like domain AFL94_17600 PF12833 Helix-turn-helix domain AFL94_17620 PF01565 FAD binding domain AFL94_17620 PF02913 FAD linked oxidases, C-terminal domain AFL94_17650 PF02348 Cytidylyltransferase AFL94_17655 PF08666 SAF domain AFL94_17655 PF03102 NeuB family AFL94_17660 PF01501 Glycosyl transferase family 8 AFL94_17660 PF00535 Glycosyl transferase family 2 AFL94_17680 PF01658 Myo-inositol-1-phosphate synthase AFL94_17690 PF00293 NUDIX domain AFL94_17705 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_17710 PF00085 Thioredoxin AFL94_17720 PF02195 ParB-like nuclease domain AFL94_17720 PF17762 HTH domain found in ParB protein AFL94_17725 PF13614 AAA domain AFL94_17730 PF02527 rRNA small subunit methyltransferase G AFL94_17740 PF02096 60Kd inner membrane protein AFL94_17745 PF01809 Putative membrane protein insertion efficiency factor