AFL94_00005 PF00308 Bacterial dnaA protein AFL94_00005 PF08299 Bacterial dnaA protein helix-turn-helix AFL94_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFL94_00010 PF02767 DNA polymerase III beta subunit, central domain AFL94_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFL94_00015 PF02463 RecF/RecN/SMC N terminal domain AFL94_00020 PF05258 AFL94_00020 AFL94_00025 PF00204 DNA gyrase B AFL94_00025 PF00986 DNA gyrase B subunit, carboxyl terminus AFL94_00025 PF01751 Toprim domain AFL94_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A AFL94_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller AFL94_00035 PF12089 AFL94_00035 AFL94_00055 PF00534 Glycosyl transferases group 1 AFL94_00055 PF13439 Glycosyltransferase Family 4 AFL94_00060 PF01758 Sodium Bile acid symporter family AFL94_00065 PF00892 EamA-like transporter family AFL94_00075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFL94_00080 PF01694 Rhomboid family AFL94_00085 PF01810 AFL94_00085 AFL94_00090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_00090 PF03466 LysR substrate binding domain AFL94_00095 PF00893 Small Multidrug Resistance protein AFL94_00100 PF06781 AFL94_00100 AFL94_00105 PF04203 Sortase family AFL94_00115 PF00117 Glutamine amidotransferase class-I AFL94_00120 PF00069 Protein kinase domain AFL94_00120 PF03793 PASTA domain AFL94_00125 PF00069 Protein kinase domain AFL94_00125 PF03793 PASTA domain AFL94_00130 PF00905 Penicillin binding protein transpeptidase domain AFL94_00135 PF01098 AFL94_00135 AFL94_00140 PF00481 Protein phosphatase 2C AFL94_00145 PF16697 AFL94_00145 AFL94_00150 PF00498 FHA domain AFL94_00150 PF12401 Protein of unknown function (DUF2662) AFL94_00170 PF00356 Bacterial regulatory proteins, lacI family AFL94_00170 PF13377 Periplasmic binding protein-like domain AFL94_00175 PF01156 Inosine-uridine preferring nucleoside hydrolase AFL94_00180 PF01738 Dienelactone hydrolase family AFL94_00185 PF00582 Universal stress protein family AFL94_00190 PF03466 LysR substrate binding domain AFL94_00195 PF00378 Enoyl-CoA hydratase/isomerase family AFL94_00205 PF00294 pfkB family carbohydrate kinase AFL94_00210 PF08282 haloacid dehalogenase-like hydrolase AFL94_00215 PF03009 Glycerophosphoryl diester phosphodiesterase family AFL94_00225 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFL94_00225 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFL94_00225 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFL94_00230 PF00083 Sugar (and other) transporter AFL94_00235 PF00860 Permease family AFL94_00240 PF03070 TENA/THI-4/PQQC family AFL94_00240 PF08543 Phosphomethylpyrimidine kinase AFL94_00245 PF02581 Thiamine monophosphate synthase/TENI AFL94_00250 PF02110 Hydroxyethylthiazole kinase family AFL94_00255 PF00392 Bacterial regulatory proteins, gntR family AFL94_00265 PF00171 Aldehyde dehydrogenase family AFL94_00270 PF00324 Amino acid permease AFL94_00275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_00275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_00275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_00275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_00290 PF13443 Cro/C1-type HTH DNA-binding domain AFL94_00295 PF00854 POT family AFL94_00300 PF01425 Amidase AFL94_00305 PF00581 Rhodanese-like domain AFL94_00310 PF00800 Prephenate dehydratase AFL94_00310 PF01842 ACT domain AFL94_00315 PF00781 Diacylglycerol kinase catalytic domain AFL94_00320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_00320 PF02403 Seryl-tRNA synthetase N-terminal domain AFL94_00325 PF08282 haloacid dehalogenase-like hydrolase AFL94_00345 PF00155 Aminotransferase class I and II AFL94_00345 PF00392 Bacterial regulatory proteins, gntR family AFL94_00350 PF01470 Pyroglutamyl peptidase AFL94_00355 PF02646 AFL94_00355 AFL94_00365 PF00719 Inorganic pyrophosphatase AFL94_00370 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AFL94_00375 PF10103 Uncharacterised conserved protein (DUF2342) AFL94_00380 PF01171 PP-loop family AFL94_00385 PF00156 Phosphoribosyl transferase domain AFL94_00390 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_00390 PF01434 Peptidase family M41 AFL94_00395 PF01227 GTP cyclohydrolase I AFL94_00400 PF00809 Pterin binding enzyme AFL94_00405 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFL94_00405 PF02152 Dihydroneopterin aldolase AFL94_00410 PF11377 AFL94_00410 AFL94_00415 PF03703 AFL94_00415 AFL94_00425 PF10727 Rossmann-like domain AFL94_00425 PF10728 Domain of unknown function (DUF2520) AFL94_00430 PF02569 Pantoate-beta-alanine ligase AFL94_00435 PF03060 Nitronate monooxygenase AFL94_00455 PF01381 Helix-turn-helix AFL94_00480 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_00485 PF01431 Peptidase family M13 AFL94_00485 PF05649 Peptidase family M13 AFL94_00490 PF00152 tRNA synthetases class II (D, K and N) AFL94_00490 PF01336 OB-fold nucleic acid binding domain AFL94_00495 PF11774 Lsr2 AFL94_00500 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_00500 PF02151 UvrB/uvrC motif AFL94_00500 PF02861 Clp amino terminal domain AFL94_00500 PF07724 AAA domain (Cdc48 subfamily) AFL94_00500 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_00510 PF08818 Domain of unknown function (DU1801) AFL94_00515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_00520 PF12833 Helix-turn-helix domain AFL94_00525 PF07690 Major Facilitator Superfamily AFL94_00530 PF00583 Acetyltransferase (GNAT) family AFL94_00535 PF06724 AFL94_00535 AFL94_00540 PF00633 Helix-hairpin-helix motif AFL94_00540 PF00730 HhH-GPD superfamily base excision DNA repair protein AFL94_00540 PF10576 Iron-sulfur binding domain of endonuclease III AFL94_00550 PF02457 DisA bacterial checkpoint controller nucleotide-binding AFL94_00550 PF10635 DisA bacterial checkpoint controller linker region AFL94_00550 PF12826 Helix-hairpin-helix motif AFL94_00555 PF13481 AAA domain AFL94_00560 PF13515 AFL94_00560 AFL94_00565 PF12849 PBP superfamily domain AFL94_00570 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_00575 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_00580 PF00005 ABC transporter AFL94_00590 PF01381 Helix-turn-helix AFL94_00595 PF01384 AFL94_00595 AFL94_00605 PF07690 Major Facilitator Superfamily AFL94_00620 PF00440 Bacterial regulatory proteins, tetR family AFL94_00630 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_00630 PF03473 MOSC domain AFL94_00630 PF03476 MOSC N-terminal beta barrel domain AFL94_00635 PF01738 Dienelactone hydrolase family AFL94_00645 PF00005 ABC transporter AFL94_00650 PF01209 ubiE/COQ5 methyltransferase family AFL94_00655 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFL94_00660 PF12840 Helix-turn-helix domain AFL94_00670 PF00171 Aldehyde dehydrogenase family AFL94_00675 PF00107 Zinc-binding dehydrogenase AFL94_00675 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_00680 PF05610 AFL94_00680 AFL94_00685 PF06441 Epoxide hydrolase N terminus AFL94_00695 PF03061 Thioesterase superfamily AFL94_00705 PF16654 AFL94_00705 AFL94_00710 PF02583 Metal-sensitive transcriptional repressor AFL94_00715 PF00085 Thioredoxin AFL94_00720 PF01925 AFL94_00720 AFL94_00725 PF00581 Rhodanese-like domain AFL94_00725 PF11127 Protein of unknown function (DUF2892) AFL94_00730 PF00581 Rhodanese-like domain AFL94_00730 PF00753 Metallo-beta-lactamase superfamily AFL94_00745 PF00392 Bacterial regulatory proteins, gntR family AFL94_00745 PF07729 FCD domain AFL94_00750 PF01565 FAD binding domain AFL94_00750 PF02754 AFL94_00750 AFL94_00750 PF02913 FAD linked oxidases, C-terminal domain AFL94_00750 PF13183 4Fe-4S dicluster domain AFL94_00755 PF08768 Domain of unknown function (DUF1794) AFL94_00760 PF01475 Ferric uptake regulator family AFL94_00765 PF12802 MarR family AFL94_00770 PF01370 NAD dependent epimerase/dehydratase family AFL94_00770 PF08338 Domain of unknown function (DUF1731) AFL94_00780 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_00780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_00780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_00790 PF01565 FAD binding domain AFL94_00790 PF04030 D-arabinono-1,4-lactone oxidase AFL94_00795 PF01168 Alanine racemase, N-terminal domain AFL94_00820 PF03009 Glycerophosphoryl diester phosphodiesterase family AFL94_00825 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_00830 PF03591 AFL94_00830 AFL94_00835 PF05437 AFL94_00835 AFL94_00845 PF01910 Domain of unknown function DUF77 AFL94_00850 PF01596 O-methyltransferase AFL94_00860 PF00583 Acetyltransferase (GNAT) family AFL94_00865 PF08241 Methyltransferase domain AFL94_00870 PF09860 AFL94_00870 AFL94_00875 PF00860 Permease family AFL94_00880 PF00582 Universal stress protein family AFL94_00885 PF00877 NlpC/P60 family AFL94_00890 PF06262 Possibl zinc metallo-peptidase AFL94_00920 PF03372 Endonuclease/Exonuclease/phosphatase family AFL94_00925 PF16113 AFL94_00925 AFL94_00930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_00930 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_00935 PF12802 MarR family AFL94_00940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_00940 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_00940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_00955 PF13601 Winged helix DNA-binding domain AFL94_00965 PF02540 NAD synthase AFL94_00975 PF00156 Phosphoribosyl transferase domain AFL94_00985 PF01061 AFL94_00985 AFL94_00990 PF00005 ABC transporter AFL94_01000 PF13242 HAD-hyrolase-like AFL94_01000 PF13344 Haloacid dehalogenase-like hydrolase AFL94_01005 PF00588 SpoU rRNA Methylase family AFL94_01015 PF01116 Fructose-bisphosphate aldolase class-II AFL94_01020 PF11349 AFL94_01020 AFL94_01025 PF00069 Protein kinase domain AFL94_01035 PF13458 Periplasmic binding protein AFL94_01050 PF05593 AFL94_01050 AFL94_01070 PF16316 AFL94_01070 AFL94_01075 PF09359 VTC domain AFL94_01080 PF00072 Response regulator receiver domain AFL94_01080 PF00486 Transcriptional regulatory protein, C terminal AFL94_01085 PF00512 His Kinase A (phospho-acceptor) domain AFL94_01085 PF00672 HAMP domain AFL94_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_01095 PF01037 AsnC family AFL94_01095 PF13412 Winged helix-turn-helix DNA-binding AFL94_01100 PF00266 Aminotransferase class-V AFL94_01105 PF00324 Amino acid permease AFL94_01115 PF00265 Thymidine kinase AFL94_01120 PF00440 Bacterial regulatory proteins, tetR family AFL94_01130 PF00909 Ammonium Transporter Family AFL94_01135 PF00543 Nitrogen regulatory protein P-II AFL94_01140 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFL94_01150 PF01546 Peptidase family M20/M25/M40 AFL94_01155 PF01266 FAD dependent oxidoreductase AFL94_01160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_01160 PF03466 LysR substrate binding domain AFL94_01165 PF00440 Bacterial regulatory proteins, tetR family AFL94_01170 PF00892 EamA-like transporter family AFL94_01185 PF00709 Adenylosuccinate synthetase AFL94_01190 PF00474 Sodium:solute symporter family AFL94_01195 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_01195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_01195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_01200 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_01200 PF14561 Tetratricopeptide repeat AFL94_01215 PF10604 Polyketide cyclase / dehydrase and lipid transport AFL94_01220 PF01522 Polysaccharide deacetylase AFL94_01225 PF05977 Transmembrane secretion effector AFL94_01230 PF00381 PTS HPr component phosphorylation site AFL94_01235 PF00391 PEP-utilising enzyme, mobile domain AFL94_01235 PF02896 PEP-utilising enzyme, TIM barrel domain AFL94_01235 PF05524 PEP-utilising enzyme, N-terminal AFL94_01240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFL94_01240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFL94_01245 PF00294 pfkB family carbohydrate kinase AFL94_01250 PF00455 AFL94_01250 AFL94_01250 PF08220 DeoR-like helix-turn-helix domain AFL94_01255 PF01522 Polysaccharide deacetylase AFL94_01260 PF01032 FecCD transport family AFL94_01265 PF01032 FecCD transport family AFL94_01270 PF01497 Periplasmic binding protein AFL94_01275 PF13380 CoA binding domain AFL94_01280 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_01285 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_01290 PF04542 Sigma-70 region 2 AFL94_01290 PF08281 Sigma-70, region 4 AFL94_01295 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFL94_01295 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFL94_01300 PF00141 Peroxidase AFL94_01305 PF01475 Ferric uptake regulator family AFL94_01310 PF02028 BCCT family transporter AFL94_01315 PF00501 AMP-binding enzyme AFL94_01315 PF13193 AMP-binding enzyme C-terminal domain AFL94_01315 PF16177 AFL94_01315 AFL94_01320 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_01325 PF09084 NMT1/THI5 like AFL94_01330 PF00005 ABC transporter AFL94_01335 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_01335 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_01340 PF00296 Luciferase-like monooxygenase AFL94_01345 PF03640 AFL94_01345 AFL94_01350 PF01019 Gamma-glutamyltranspeptidase AFL94_01355 PF03640 AFL94_01355 AFL94_01360 PF13490 Putative zinc-finger AFL94_01365 PF04542 Sigma-70 region 2 AFL94_01365 PF08281 Sigma-70, region 4 AFL94_01370 PF13460 NADH(P)-binding AFL94_01375 PF01126 Heme oxygenase AFL94_01380 PF00005 ABC transporter AFL94_01385 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_01390 PF03180 NLPA lipoprotein AFL94_01395 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_01395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_01395 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_01400 PF00296 Luciferase-like monooxygenase AFL94_01405 PF13380 CoA binding domain AFL94_01410 PF04237 YjbR AFL94_01420 PF03992 Antibiotic biosynthesis monooxygenase AFL94_01425 PF00149 Calcineurin-like phosphoesterase AFL94_01425 PF02872 5'-nucleotidase, C-terminal domain AFL94_01435 PF07510 AFL94_01435 AFL94_01450 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_01455 PF00296 Luciferase-like monooxygenase AFL94_01460 PF04954 Siderophore-interacting protein AFL94_01460 PF08021 Siderophore-interacting FAD-binding domain AFL94_01465 PF03831 PhnA protein AFL94_01465 PF08274 PhnA Zinc-Ribbon AFL94_01470 PF03807 NADP oxidoreductase coenzyme F420-dependent AFL94_01475 PF00296 Luciferase-like monooxygenase AFL94_01480 PF00586 AIR synthase related protein, N-terminal domain AFL94_01480 PF02769 AIR synthase related protein, C-terminal domain AFL94_01485 PF13507 CobB/CobQ-like glutamine amidotransferase domain AFL94_01490 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AFL94_01500 PF12796 Ankyrin repeats (3 copies) AFL94_01505 PF05958 tRNA (Uracil-5-)-methyltransferase AFL94_01510 PF00999 Sodium/hydrogen exchanger family AFL94_01525 PF04978 Protein of unknown function (DUF664) AFL94_01530 PF03600 Citrate transporter AFL94_01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_01535 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFL94_01535 PF17203 AFL94_01535 AFL94_01540 PF00072 Response regulator receiver domain AFL94_01540 PF09339 IclR helix-turn-helix domain AFL94_01545 PF01636 Phosphotransferase enzyme family AFL94_01550 PF00696 Amino acid kinase family AFL94_01550 PF01842 ACT domain AFL94_01550 PF13840 ACT domain AFL94_01560 PF12802 MarR family AFL94_01565 PF07690 Major Facilitator Superfamily AFL94_01585 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFL94_01590 PF01844 HNH endonuclease AFL94_01590 PF02720 AFL94_01590 AFL94_01605 PF00072 Response regulator receiver domain AFL94_01605 PF00486 Transcriptional regulatory protein, C terminal AFL94_01610 PF03171 2OG-Fe(II) oxygenase superfamily AFL94_01610 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AFL94_01625 PF01323 DSBA-like thioredoxin domain AFL94_01630 PF06912 AFL94_01630 AFL94_01635 PF00324 Amino acid permease AFL94_01640 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_01645 PF12146 Putative lysophospholipase AFL94_01650 PF01274 Malate synthase AFL94_01655 PF00463 Isocitrate lyase family AFL94_01660 PF07690 Major Facilitator Superfamily AFL94_01665 PF07969 Amidohydrolase family AFL94_01675 PF06114 Domain of unknown function (DUF955) AFL94_01675 PF12844 Helix-turn-helix domain AFL94_01680 PF00582 Universal stress protein family AFL94_01685 PF00155 Aminotransferase class I and II AFL94_01685 PF00392 Bacterial regulatory proteins, gntR family AFL94_01690 PF00842 Alanine racemase, C-terminal domain AFL94_01690 PF01168 Alanine racemase, N-terminal domain AFL94_01695 PF00202 Aminotransferase class-III AFL94_01705 PF13520 Amino acid permease AFL94_01710 PF06213 AFL94_01710 AFL94_01710 PF11775 AFL94_01710 AFL94_01715 PF07728 AAA domain (dynein-related subfamily) AFL94_01715 PF08406 AFL94_01715 AFL94_01720 PF01614 Bacterial transcriptional regulator AFL94_01720 PF09339 IclR helix-turn-helix domain AFL94_01725 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_01725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_01725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_01730 PF02223 Thymidylate kinase AFL94_01735 PF01738 Dienelactone hydrolase family AFL94_01755 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_01755 PF02861 Clp amino terminal domain AFL94_01755 PF07724 AAA domain (Cdc48 subfamily) AFL94_01755 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_01760 PF00072 Response regulator receiver domain AFL94_01760 PF00196 Bacterial regulatory proteins, luxR family AFL94_01765 PF07730 Histidine kinase AFL94_01770 PF00881 Nitroreductase family AFL94_01780 PF01266 FAD dependent oxidoreductase AFL94_01785 PF01370 NAD dependent epimerase/dehydratase family AFL94_01790 PF00717 Peptidase S24-like AFL94_01795 PF00817 impB/mucB/samB family AFL94_01795 PF11799 impB/mucB/samB family C-terminal domain AFL94_01795 PF13438 AFL94_01795 AFL94_01800 PF00933 Glycosyl hydrolase family 3 N terminal domain AFL94_01805 PF00082 Subtilase family AFL94_01805 PF02225 PA domain AFL94_01810 PF16571 AFL94_01810 AFL94_01815 PF08543 Phosphomethylpyrimidine kinase AFL94_01825 PF00440 Bacterial regulatory proteins, tetR family AFL94_01830 PF02592 AFL94_01830 AFL94_01835 PF00005 ABC transporter AFL94_01845 PF01702 Queuine tRNA-ribosyltransferase AFL94_01850 PF13515 AFL94_01850 AFL94_01855 PF16262 AFL94_01855 AFL94_01860 PF07690 Major Facilitator Superfamily AFL94_01865 PF00106 short chain dehydrogenase AFL94_01875 PF00849 RNA pseudouridylate synthase AFL94_01880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFL94_01880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_01885 PF00270 DEAD/DEAH box helicase AFL94_01885 PF00271 Helicase conserved C-terminal domain AFL94_01885 PF06224 AFL94_01885 AFL94_01885 PF08494 AFL94_01885 AFL94_01890 PF02590 Predicted SPOUT methyltransferase AFL94_01905 PF00491 Arginase family AFL94_01910 PF03616 AFL94_01910 AFL94_01915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFL94_01915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_01930 PF00005 ABC transporter AFL94_01940 PF03551 Transcriptional regulator PadR-like family AFL94_01945 PF02517 CAAX protease self-immunity AFL94_01955 PF02627 Carboxymuconolactone decarboxylase family AFL94_01960 PF12146 Putative lysophospholipase AFL94_01965 PF00206 Lyase AFL94_01970 PF00775 Dioxygenase AFL94_01975 PF00775 Dioxygenase AFL94_01975 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AFL94_01980 PF01494 FAD binding domain AFL94_01985 PF01958 Domain of unknown function DUF108 AFL94_01985 PF03447 Homoserine dehydrogenase, NAD binding domain AFL94_01990 PF01614 Bacterial transcriptional regulator AFL94_01990 PF09339 IclR helix-turn-helix domain AFL94_01995 PF07690 Major Facilitator Superfamily AFL94_02000 PF00108 Thiolase, N-terminal domain AFL94_02000 PF02803 Thiolase, C-terminal domain AFL94_02005 PF01144 Coenzyme A transferase AFL94_02010 PF01144 Coenzyme A transferase AFL94_02015 PF01614 Bacterial transcriptional regulator AFL94_02015 PF09339 IclR helix-turn-helix domain AFL94_02025 PF00440 Bacterial regulatory proteins, tetR family AFL94_02030 PF03435 Saccharopine dehydrogenase AFL94_02030 PF16653 AFL94_02030 AFL94_02035 PF13520 Amino acid permease AFL94_02040 PF00932 Lamin Tail Domain AFL94_02040 PF03009 Glycerophosphoryl diester phosphodiesterase family AFL94_02045 PF00994 Probable molybdopterin binding domain AFL94_02050 PF01967 MoaC family AFL94_02055 PF00994 Probable molybdopterin binding domain AFL94_02055 PF03453 MoeA N-terminal region (domain I and II) AFL94_02055 PF03454 MoeA C-terminal region (domain IV) AFL94_02065 PF00581 Rhodanese-like domain AFL94_02065 PF00899 ThiF family AFL94_02070 PF02391 MoaE protein AFL94_02075 PF08279 HTH domain AFL94_02075 PF13280 AFL94_02075 AFL94_02080 PF04978 Protein of unknown function (DUF664) AFL94_02090 PF04055 Radical SAM superfamily AFL94_02090 PF06463 Molybdenum Cofactor Synthesis C AFL94_02090 PF13394 4Fe-4S single cluster domain AFL94_02095 PF13531 Bacterial extracellular solute-binding protein AFL94_02100 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_02110 PF00994 Probable molybdopterin binding domain AFL94_02110 PF03453 MoeA N-terminal region (domain I and II) AFL94_02110 PF03454 MoeA C-terminal region (domain IV) AFL94_02115 PF12804 MobA-like NTP transferase domain AFL94_02120 PF02720 AFL94_02120 AFL94_02130 PF02665 Nitrate reductase gamma subunit AFL94_02135 PF02613 Nitrate reductase delta subunit AFL94_02140 PF13247 4Fe-4S dicluster domain AFL94_02140 PF14711 Respiratory nitrate reductase beta C-terminal AFL94_02145 PF00384 Molybdopterin oxidoreductase AFL94_02145 PF01568 Molydopterin dinucleotide binding domain AFL94_02150 PF07690 Major Facilitator Superfamily AFL94_02155 PF00293 NUDIX domain AFL94_02160 PF07152 YaeQ protein AFL94_02165 PF07866 Protein of unknown function (DUF1653) AFL94_02170 PF04226 AFL94_02170 AFL94_02180 PF14437 AFL94_02180 AFL94_02185 PF14681 Uracil phosphoribosyltransferase AFL94_02190 PF00512 His Kinase A (phospho-acceptor) domain AFL94_02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_02195 PF00072 Response regulator receiver domain AFL94_02195 PF00486 Transcriptional regulatory protein, C terminal AFL94_02200 PF00486 Transcriptional regulatory protein, C terminal AFL94_02205 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_02220 PF00440 Bacterial regulatory proteins, tetR family AFL94_02225 PF12698 ABC-2 family transporter protein AFL94_02235 PF03372 Endonuclease/Exonuclease/phosphatase family AFL94_02240 PF13416 Bacterial extracellular solute-binding protein AFL94_02245 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_02250 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_02255 PF00232 Glycosyl hydrolase family 1 AFL94_02260 PF00356 Bacterial regulatory proteins, lacI family AFL94_02260 PF13377 Periplasmic binding protein-like domain AFL94_02280 PF00821 Phosphoenolpyruvate carboxykinase AFL94_02280 PF17297 AFL94_02280 AFL94_02285 PF07690 Major Facilitator Superfamily AFL94_02290 PF03551 Transcriptional regulator PadR-like family AFL94_02290 PF10400 Virulence activator alpha C-term AFL94_02300 PF00042 Globin AFL94_02300 PF00175 Oxidoreductase NAD-binding domain AFL94_02300 PF00970 Oxidoreductase FAD-binding domain AFL94_02305 PF02082 Transcriptional regulator AFL94_02315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_02315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_02315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_02315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_02320 PF00270 DEAD/DEAH box helicase AFL94_02320 PF00271 Helicase conserved C-terminal domain AFL94_02335 PF00326 Prolyl oligopeptidase family AFL94_02335 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFL94_02340 PF13454 FAD-NAD(P)-binding AFL94_02350 PF00107 Zinc-binding dehydrogenase AFL94_02350 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_02355 PF02554 AFL94_02355 AFL94_02355 PF13722 AFL94_02355 AFL94_02360 PF04328 AFL94_02360 AFL94_02370 PF00248 Aldo/keto reductase family AFL94_02390 PF00561 alpha/beta hydrolase fold AFL94_02395 PF09115 DNA polymerase III, delta subunit, C terminal AFL94_02395 PF13177 DNA polymerase III, delta subunit AFL94_02400 PF02223 Thymidylate kinase AFL94_02405 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_02410 PF10724 AFL94_02410 AFL94_02415 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_02420 PF13834 AFL94_02420 AFL94_02425 PF01895 PhoU domain AFL94_02430 PF00512 His Kinase A (phospho-acceptor) domain AFL94_02430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_02435 PF00072 Response regulator receiver domain AFL94_02435 PF00486 Transcriptional regulatory protein, C terminal AFL94_02445 PF02559 CarD-like/TRCF domain AFL94_02450 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFL94_02450 PF02542 YgbB family AFL94_02455 PF01406 tRNA synthetases class I (C) catalytic domain AFL94_02455 PF09190 DALR domain AFL94_02460 PF00588 SpoU rRNA Methylase family AFL94_02460 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFL94_02480 PF01565 FAD binding domain AFL94_02480 PF02913 FAD linked oxidases, C-terminal domain AFL94_02520 PF00005 ABC transporter AFL94_02520 PF08402 TOBE domain AFL94_02525 PF02358 Trehalose-phosphatase AFL94_02530 PF00982 Glycosyltransferase family 20 AFL94_02535 PF13462 Thioredoxin AFL94_02550 PF00665 Integrase core domain AFL94_02555 PF01527 Transposase AFL94_02560 PF01555 DNA methylase AFL94_02565 PF04851 Type III restriction enzyme, res subunit AFL94_02570 PF05661 AFL94_02570 AFL94_02575 PF02384 N-6 DNA Methylase AFL94_02585 PF00583 Acetyltransferase (GNAT) family AFL94_02595 PF00296 Luciferase-like monooxygenase AFL94_02600 PF06738 AFL94_02600 AFL94_02600 PF12821 AFL94_02600 AFL94_02605 PF03167 Uracil DNA glycosylase superfamily AFL94_02610 PF11662 AFL94_02610 AFL94_02615 PF13399 LytR cell envelope-related transcriptional attenuator AFL94_02620 PF00118 TCP-1/cpn60 chaperonin family AFL94_02625 PF13223 AFL94_02625 AFL94_02635 PF06013 Proteins of 100 residues with WXG AFL94_02640 PF00512 His Kinase A (phospho-acceptor) domain AFL94_02640 PF00672 HAMP domain AFL94_02640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_02645 PF00072 Response regulator receiver domain AFL94_02645 PF00486 Transcriptional regulatory protein, C terminal AFL94_02655 PF00313 'Cold-shock' DNA-binding domain AFL94_02660 PF11228 AFL94_02660 AFL94_02665 PF00266 Aminotransferase class-V AFL94_02670 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFL94_02670 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_02670 PF04023 FeoA domain AFL94_02675 PF01551 Peptidase family M23 AFL94_02680 PF00877 NlpC/P60 family AFL94_02685 PF14279 AFL94_02685 AFL94_02690 PF00293 NUDIX domain AFL94_02695 PF00480 ROK family AFL94_02695 PF13412 Winged helix-turn-helix DNA-binding AFL94_02710 PF00580 UvrD/REP helicase N-terminal domain AFL94_02710 PF13361 UvrD-like helicase C-terminal domain AFL94_02715 PF00549 CoA-ligase AFL94_02715 PF08442 ATP-grasp domain AFL94_02720 PF00549 CoA-ligase AFL94_02720 PF02629 CoA binding domain AFL94_02735 PF03641 Possible lysine decarboxylase AFL94_02740 PF01988 AFL94_02740 AFL94_02750 PF04978 Protein of unknown function (DUF664) AFL94_02755 PF01381 Helix-turn-helix AFL94_02755 PF07883 Cupin domain AFL94_02775 PF00202 Aminotransferase class-III AFL94_02780 PF00491 Arginase family AFL94_02785 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_02785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_02785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_02795 PF00459 Inositol monophosphatase family AFL94_02805 PF07690 Major Facilitator Superfamily AFL94_02815 PF02515 CoA-transferase family III AFL94_02820 PF07905 AFL94_02820 AFL94_02820 PF13556 PucR C-terminal helix-turn-helix domain AFL94_02825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_02825 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_02825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_02830 PF00171 Aldehyde dehydrogenase family AFL94_02835 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_02835 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_02840 PF12900 Pyridoxamine 5'-phosphate oxidase AFL94_02845 PF09949 AFL94_02845 AFL94_02850 PF13279 Thioesterase-like superfamily AFL94_02855 PF04954 Siderophore-interacting protein AFL94_02855 PF08021 Siderophore-interacting FAD-binding domain AFL94_02860 PF03352 Methyladenine glycosylase AFL94_02865 PF01022 Bacterial regulatory protein, arsR family AFL94_02870 PF01545 Cation efflux family AFL94_02875 PF00005 ABC transporter AFL94_02880 PF02687 AFL94_02880 AFL94_02880 PF12704 MacB-like periplasmic core domain AFL94_02890 PF13555 P-loop containing region of AAA domain AFL94_02890 PF13558 Putative exonuclease SbcCD, C subunit AFL94_02895 PF13835 AFL94_02895 AFL94_02900 PF11855 AFL94_02900 AFL94_02910 PF13087 AAA domain AFL94_02910 PF13482 RNase_H superfamily AFL94_02910 PF13604 AAA domain AFL94_02920 PF13398 Peptidase M50B-like AFL94_02925 PF03631 AFL94_02925 AFL94_02930 PF01476 LysM domain AFL94_02930 PF06737 Transglycosylase-like domain AFL94_02935 PF02515 CoA-transferase family III AFL94_02940 PF07848 PaaX-like protein AFL94_02940 PF08223 PaaX-like protein C-terminal domain AFL94_02945 PF03301 Tryptophan 2,3-dioxygenase AFL94_02950 PF03358 NADPH-dependent FMN reductase AFL94_02960 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_02970 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFL94_02975 PF00551 Formyl transferase AFL94_02980 PF00106 short chain dehydrogenase AFL94_02985 PF01074 Glycosyl hydrolases family 38 N-terminal domain AFL94_02985 PF07748 Glycosyl hydrolases family 38 C-terminal domain AFL94_02985 PF09261 Alpha mannosidase, middle domain AFL94_02990 PF00440 Bacterial regulatory proteins, tetR family AFL94_03010 PF00083 Sugar (and other) transporter AFL94_03020 PF01808 AICARFT/IMPCHase bienzyme AFL94_03020 PF02142 MGS-like domain AFL94_03025 PF02028 BCCT family transporter AFL94_03045 PF01566 AFL94_03045 AFL94_03050 PF07286 Protein of unknown function (DUF1445) AFL94_03055 PF13520 Amino acid permease AFL94_03065 PF00392 Bacterial regulatory proteins, gntR family AFL94_03070 PF07690 Major Facilitator Superfamily AFL94_03075 PF00392 Bacterial regulatory proteins, gntR family AFL94_03075 PF07729 FCD domain AFL94_03080 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFL94_03080 PF00364 Biotin-requiring enzyme AFL94_03080 PF02785 Biotin carboxylase C-terminal domain AFL94_03080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_03085 PF02626 Allophanate hydrolase subunit 2 AFL94_03085 PF02682 Allophanate hydrolase subunit 1 AFL94_03090 PF03746 LamB/YcsF family AFL94_03095 PF00199 Catalase AFL94_03095 PF06628 Catalase-related immune-responsive AFL94_03100 PF07690 Major Facilitator Superfamily AFL94_03110 PF03971 Monomeric isocitrate dehydrogenase AFL94_03115 PF04138 AFL94_03115 AFL94_03120 PF01966 HD domain AFL94_03120 PF13286 Phosphohydrolase-associated domain AFL94_03125 PF00392 Bacterial regulatory proteins, gntR family AFL94_03125 PF07729 FCD domain AFL94_03130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_03135 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_03140 PF13376 AFL94_03140 AFL94_03155 PF01610 AFL94_03155 AFL94_03155 PF14690 AFL94_03155 AFL94_03160 PF03992 Antibiotic biosynthesis monooxygenase AFL94_03165 PF00440 Bacterial regulatory proteins, tetR family AFL94_03170 PF00005 ABC transporter AFL94_03175 PF02687 AFL94_03175 AFL94_03190 PF01717 Cobalamin-independent synthase, Catalytic domain AFL94_03195 PF08908 AFL94_03195 AFL94_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_03200 PF03466 LysR substrate binding domain AFL94_03205 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_03210 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_03245 PF06445 GyrI-like small molecule binding domain AFL94_03245 PF12833 Helix-turn-helix domain AFL94_03250 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_03255 PF00551 Formyl transferase AFL94_03255 PF01842 ACT domain AFL94_03265 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFL94_03270 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFL94_03270 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFL94_03290 PF12802 MarR family AFL94_03300 PF04226 AFL94_03300 AFL94_03305 PF00083 Sugar (and other) transporter AFL94_03305 PF07690 Major Facilitator Superfamily AFL94_03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_03310 PF03466 LysR substrate binding domain AFL94_03320 PF00072 Response regulator receiver domain AFL94_03320 PF00196 Bacterial regulatory proteins, luxR family AFL94_03325 PF07730 Histidine kinase AFL94_03330 PF11139 AFL94_03330 AFL94_03340 PF00293 NUDIX domain AFL94_03345 PF03372 Endonuclease/Exonuclease/phosphatase family AFL94_03350 PF00579 tRNA synthetases class I (W and Y) AFL94_03355 PF13563 2'-5' RNA ligase superfamily AFL94_03360 PF13396 AFL94_03360 AFL94_03365 PF04020 AFL94_03365 AFL94_03370 PF00916 AFL94_03370 AFL94_03375 PF11139 AFL94_03375 AFL94_03380 PF03781 Sulfatase-modifying factor enzyme 1 AFL94_03385 PF00196 Bacterial regulatory proteins, luxR family AFL94_03390 PF01935 Domain of unknown function DUF87 AFL94_03395 PF06742 Protein of unknown function (DUF1214) AFL94_03395 PF06863 Protein of unknown function (DUF1254) AFL94_03405 PF11139 AFL94_03405 AFL94_03410 PF13085 2Fe-2S iron-sulfur cluster binding domain AFL94_03410 PF13183 4Fe-4S dicluster domain AFL94_03415 PF00890 FAD binding domain AFL94_03415 PF02910 Fumarate reductase flavoprotein C-term AFL94_03420 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFL94_03425 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFL94_03430 PF00483 Nucleotidyl transferase AFL94_03430 PF01050 Mannose-6-phosphate isomerase AFL94_03435 PF02028 BCCT family transporter AFL94_03440 PF01546 Peptidase family M20/M25/M40 AFL94_03440 PF07687 Peptidase dimerisation domain AFL94_03445 PF02608 Basic membrane protein AFL94_03450 PF00005 ABC transporter AFL94_03455 PF02653 AFL94_03455 AFL94_03460 PF02653 AFL94_03460 AFL94_03465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_03470 PF00591 Glycosyl transferase family, a/b domain AFL94_03470 PF02885 Glycosyl transferase family, helical bundle domain AFL94_03470 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AFL94_03475 PF09335 AFL94_03475 AFL94_03480 PF00962 Adenosine/AMP deaminase AFL94_03485 PF00171 Aldehyde dehydrogenase family AFL94_03490 PF03819 MazG nucleotide pyrophosphohydrolase domain AFL94_03495 PF00113 Enolase, C-terminal TIM barrel domain AFL94_03495 PF03952 Enolase, N-terminal domain AFL94_03500 PF04977 Septum formation initiator AFL94_03505 PF04417 AFL94_03505 AFL94_03510 PF02541 Ppx/GppA phosphatase family AFL94_03515 PF00082 Subtilase family AFL94_03525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_03535 PF12811 AFL94_03535 AFL94_03540 PF01594 AFL94_03540 AFL94_03545 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_03545 PF01842 ACT domain AFL94_03550 PF01272 Transcription elongation factor, GreA/GreB, C-term AFL94_03550 PF03449 Transcription elongation factor, N-terminal AFL94_03555 PF14155 AFL94_03555 AFL94_03560 PF02585 GlcNAc-PI de-N-acetylase AFL94_03575 PF01255 Putative undecaprenyl diphosphate synthase AFL94_03580 PF02562 PhoH-like protein AFL94_03580 PF13638 PIN domain AFL94_03590 PF01478 Type IV leader peptidase family AFL94_03595 PF00293 NUDIX domain AFL94_03600 PF07690 Major Facilitator Superfamily AFL94_03605 PF00440 Bacterial regulatory proteins, tetR family AFL94_03610 PF13302 Acetyltransferase (GNAT) domain AFL94_03615 PF01244 Membrane dipeptidase (Peptidase family M19) AFL94_03625 PF00206 Lyase AFL94_03625 PF10415 Fumarase C C-terminus AFL94_03630 PF00484 Carbonic anhydrase AFL94_03635 PF14030 AFL94_03635 AFL94_03640 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFL94_03645 PF01238 Phosphomannose isomerase type I AFL94_03650 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_03655 PF00731 AIR carboxylase AFL94_03660 PF02222 ATP-grasp domain AFL94_03665 PF04138 AFL94_03665 AFL94_03675 PF02467 AFL94_03675 AFL94_03695 PF06262 Possibl zinc metallo-peptidase AFL94_03700 PF12005 AFL94_03700 AFL94_03705 PF07314 AFL94_03705 AFL94_03710 PF00501 AMP-binding enzyme AFL94_03715 PF02366 AFL94_03715 AFL94_03715 PF16192 AFL94_03715 AFL94_03720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFL94_03725 PF00171 Aldehyde dehydrogenase family AFL94_03730 PF01841 Transglutaminase-like superfamily AFL94_03735 PF01882 AFL94_03735 AFL94_03740 PF07726 ATPase family associated with various cellular activities (AAA) AFL94_03745 PF01026 TatD related DNase AFL94_03750 PF03990 AFL94_03750 AFL94_03750 PF06737 Transglycosylase-like domain AFL94_03750 PF07501 G5 domain AFL94_03755 PF00398 Ribosomal RNA adenine dimethylase AFL94_03760 PF00288 GHMP kinases N terminal domain AFL94_03760 PF08544 GHMP kinases C terminal AFL94_03765 PF01266 FAD dependent oxidoreductase AFL94_03775 PF00155 Aminotransferase class I and II AFL94_03780 PF02585 GlcNAc-PI de-N-acetylase AFL94_03785 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_03790 PF00005 ABC transporter AFL94_03790 PF16326 AFL94_03790 AFL94_03800 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_03800 PF12804 MobA-like NTP transferase domain AFL94_03805 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFL94_03805 PF14572 Phosphoribosyl synthetase-associated domain AFL94_03810 PF08818 Domain of unknown function (DU1801) AFL94_03815 PF01386 Ribosomal L25p family AFL94_03820 PF01195 Peptidyl-tRNA hydrolase AFL94_03830 PF00266 Aminotransferase class-V AFL94_03835 PF01592 NifU-like N terminal domain AFL94_03840 PF06965 Na+/H+ antiporter 1 AFL94_03845 PF10698 AFL94_03845 AFL94_03850 PF00270 DEAD/DEAH box helicase AFL94_03850 PF00271 Helicase conserved C-terminal domain AFL94_03850 PF02559 CarD-like/TRCF domain AFL94_03850 PF03461 TRCF domain AFL94_03855 PF12688 Tetratrico peptide repeat AFL94_03860 PF00122 E1-E2 ATPase AFL94_03860 PF00702 haloacid dehalogenase-like hydrolase AFL94_03870 PF01791 DeoC/LacD family aldolase AFL94_03875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_03875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_03875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_03875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_03880 PF01048 Phosphorylase superfamily AFL94_03885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_03885 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_03890 PF07690 Major Facilitator Superfamily AFL94_03895 PF13460 NADH(P)-binding AFL94_03910 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFL94_03910 PF00364 Biotin-requiring enzyme AFL94_03910 PF02785 Biotin carboxylase C-terminal domain AFL94_03910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_03915 PF11706 CGNR zinc finger AFL94_03920 PF03738 Glutathionylspermidine synthase preATP-grasp AFL94_03930 PF02545 Maf-like protein AFL94_03935 PF03176 MMPL family AFL94_03950 PF00375 Sodium:dicarboxylate symporter family AFL94_03955 PF12840 Helix-turn-helix domain AFL94_03960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_03965 PF05960 Bacterial protein of unknown function (DUF885) AFL94_03970 PF07690 Major Facilitator Superfamily AFL94_03975 PF00440 Bacterial regulatory proteins, tetR family AFL94_03980 PF13822 AFL94_03980 AFL94_03985 PF01039 Carboxyl transferase domain AFL94_03990 PF00106 short chain dehydrogenase AFL94_03995 PF02237 Biotin protein ligase C terminal domain AFL94_03995 PF03099 Biotin/lipoate A/B protein ligase family AFL94_04005 PF00211 Adenylate and Guanylate cyclase catalytic domain AFL94_04005 PF16701 AFL94_04005 AFL94_04015 PF00533 BRCA1 C Terminus (BRCT) domain AFL94_04015 PF01653 NAD-dependent DNA ligase adenylation domain AFL94_04015 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFL94_04015 PF03120 NAD-dependent DNA ligase OB-fold domain AFL94_04015 PF12826 Helix-hairpin-helix motif AFL94_04020 PF00459 Inositol monophosphatase family AFL94_04040 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFL94_04045 PF00933 Glycosyl hydrolase family 3 N terminal domain AFL94_04050 PF00583 Acetyltransferase (GNAT) family AFL94_04055 PF00905 Penicillin binding protein transpeptidase domain AFL94_04055 PF03717 Penicillin-binding Protein dimerisation domain AFL94_04055 PF05223 NTF2-like N-terminal transpeptidase domain AFL94_04075 PF02686 Glu-tRNAGln amidotransferase C subunit AFL94_04080 PF01425 Amidase AFL94_04085 PF02637 GatB domain AFL94_04085 PF02934 GatB/GatE catalytic domain AFL94_04095 PF01636 Phosphotransferase enzyme family AFL94_04100 PF00480 ROK family AFL94_04105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_04110 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04115 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04120 PF00005 ABC transporter AFL94_04120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_04125 PF00005 ABC transporter AFL94_04125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_04130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_04130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_04135 PF13419 Haloacid dehalogenase-like hydrolase AFL94_04140 PF13302 Acetyltransferase (GNAT) domain AFL94_04145 PF07690 Major Facilitator Superfamily AFL94_04150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_04150 PF03466 LysR substrate binding domain AFL94_04155 PF00107 Zinc-binding dehydrogenase AFL94_04155 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_04160 PF00155 Aminotransferase class I and II AFL94_04165 PF00356 Bacterial regulatory proteins, lacI family AFL94_04165 PF13377 Periplasmic binding protein-like domain AFL94_04170 PF01547 Bacterial extracellular solute-binding protein AFL94_04175 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04180 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04185 PF05962 HutD AFL94_04190 PF01614 Bacterial transcriptional regulator AFL94_04190 PF09339 IclR helix-turn-helix domain AFL94_04195 PF01175 Urocanase AFL94_04195 PF17391 AFL94_04195 AFL94_04195 PF17392 AFL94_04195 AFL94_04200 PF07670 Nucleoside recognition AFL94_04205 PF01546 Peptidase family M20/M25/M40 AFL94_04210 PF01979 Amidohydrolase family AFL94_04215 PF01979 Amidohydrolase family AFL94_04220 PF08534 Redoxin AFL94_04225 PF01380 SIS domain AFL94_04230 PF00480 ROK family AFL94_04235 PF00294 pfkB family carbohydrate kinase AFL94_04240 PF01116 Fructose-bisphosphate aldolase class-II AFL94_04245 PF13416 Bacterial extracellular solute-binding protein AFL94_04250 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04255 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04265 PF00455 AFL94_04265 AFL94_04265 PF08220 DeoR-like helix-turn-helix domain AFL94_04275 PF02517 CAAX protease self-immunity AFL94_04280 PF00583 Acetyltransferase (GNAT) family AFL94_04290 PF13468 Glyoxalase-like domain AFL94_04295 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_04300 PF00561 alpha/beta hydrolase fold AFL94_04305 PF13472 GDSL-like Lipase/Acylhydrolase family AFL94_04315 PF02230 Phospholipase/Carboxylesterase AFL94_04320 PF13275 S4 domain AFL94_04325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_04325 PF03129 Anticodon binding domain AFL94_04335 PF04657 AFL94_04335 AFL94_04340 PF02417 AFL94_04340 AFL94_04345 PF03992 Antibiotic biosynthesis monooxygenase AFL94_04360 PF01207 Dihydrouridine synthase (Dus) AFL94_04365 PF01966 HD domain AFL94_04365 PF13286 Phosphohydrolase-associated domain AFL94_04370 PF01807 CHC2 zinc finger AFL94_04370 PF08275 DNA primase catalytic core, N-terminal domain AFL94_04370 PF08278 DNA primase DnaG DnaB-binding AFL94_04370 PF10410 DnaB-helicase binding domain of primase AFL94_04370 PF13662 Toprim domain AFL94_04390 PF01061 AFL94_04390 AFL94_04395 PF00005 ABC transporter AFL94_04400 PF06304 Protein of unknown function (DUF1048) AFL94_04405 PF03551 Transcriptional regulator PadR-like family AFL94_04410 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFL94_04415 PF04183 IucA / IucC family AFL94_04415 PF06276 Ferric iron reductase FhuF-like transporter AFL94_04415 PF13523 Acetyltransferase (GNAT) domain AFL94_04420 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AFL94_04425 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFL94_04430 PF07690 Major Facilitator Superfamily AFL94_04435 PF00534 Glycosyl transferases group 1 AFL94_04435 PF13439 Glycosyltransferase Family 4 AFL94_04450 PF05653 AFL94_04450 AFL94_04455 PF00534 Glycosyl transferases group 1 AFL94_04455 PF13439 Glycosyltransferase Family 4 AFL94_04465 PF01551 Peptidase family M23 AFL94_04470 PF00318 Ribosomal protein S2 AFL94_04475 PF00889 Elongation factor TS AFL94_04480 PF00696 Amino acid kinase family AFL94_04485 PF01765 Ribosome recycling factor AFL94_04490 PF01148 Cytidylyltransferase family AFL94_04500 PF00474 Sodium:solute symporter family AFL94_04510 PF00072 Response regulator receiver domain AFL94_04510 PF04397 LytTr DNA-binding domain AFL94_04515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_04515 PF06580 AFL94_04515 AFL94_04520 PF04341 AFL94_04520 AFL94_04525 PF00474 Sodium:solute symporter family AFL94_04530 PF02585 GlcNAc-PI de-N-acetylase AFL94_04535 PF02655 ATP-grasp domain AFL94_04540 PF13641 Glycosyltransferase like family 2 AFL94_04545 PF01037 AsnC family AFL94_04545 PF13404 AsnC-type helix-turn-helix domain AFL94_04550 PF00676 Dehydrogenase E1 component AFL94_04555 PF02779 Transketolase, pyrimidine binding domain AFL94_04555 PF02780 Transketolase, C-terminal domain AFL94_04560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_04560 PF00364 Biotin-requiring enzyme AFL94_04560 PF02817 e3 binding domain AFL94_04565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_04570 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04575 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04575 PF12911 AFL94_04575 AFL94_04580 PF00005 ABC transporter AFL94_04580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_04585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_04590 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04595 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_04595 PF12911 AFL94_04595 AFL94_04600 PF00005 ABC transporter AFL94_04600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_04605 PF13302 Acetyltransferase (GNAT) domain AFL94_04610 PF00440 Bacterial regulatory proteins, tetR family AFL94_04615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_04615 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_04615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_04620 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFL94_04620 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AFL94_04620 PF13288 DXP reductoisomerase C-terminal domain AFL94_04625 PF02163 Peptidase family M50 AFL94_04625 PF13180 PDZ domain AFL94_04630 PF03795 YCII-related domain AFL94_04635 PF00472 RF-1 domain AFL94_04640 PF03358 NADPH-dependent FMN reductase AFL94_04645 PF04551 GcpE protein AFL94_04650 PF00583 Acetyltransferase (GNAT) family AFL94_04650 PF13312 AFL94_04650 AFL94_04675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_04675 PF03129 Anticodon binding domain AFL94_04675 PF04073 Aminoacyl-tRNA editing domain AFL94_04680 PF01925 AFL94_04680 AFL94_04685 PF00072 Response regulator receiver domain AFL94_04685 PF00196 Bacterial regulatory proteins, luxR family AFL94_04690 PF07730 Histidine kinase AFL94_04700 PF03631 AFL94_04700 AFL94_04715 PF02576 Uncharacterised BCR, YhbC family COG0779 AFL94_04715 PF17384 AFL94_04715 AFL94_04720 PF08529 NusA N-terminal domain AFL94_04720 PF13184 NusA-like KH domain AFL94_04725 PF00009 Elongation factor Tu GTP binding domain AFL94_04725 PF04760 Translation initiation factor IF-2, N-terminal region AFL94_04725 PF11987 Translation-initiation factor 2 AFL94_04730 PF02033 Ribosome-binding factor A AFL94_04735 PF00174 Oxidoreductase molybdopterin binding domain AFL94_04740 PF10099 AFL94_04740 AFL94_04745 PF04542 Sigma-70 region 2 AFL94_04745 PF08281 Sigma-70, region 4 AFL94_04750 PF02469 Fasciclin domain AFL94_04760 PF00474 Sodium:solute symporter family AFL94_04765 PF00083 Sugar (and other) transporter AFL94_04765 PF07690 Major Facilitator Superfamily AFL94_04770 PF01546 Peptidase family M20/M25/M40 AFL94_04770 PF07687 Peptidase dimerisation domain AFL94_04775 PF02720 AFL94_04775 AFL94_04785 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFL94_04785 PF09142 tRNA Pseudouridine synthase II, C terminal AFL94_04785 PF16198 AFL94_04785 AFL94_04800 PF01687 Riboflavin kinase AFL94_04800 PF06574 FAD synthetase AFL94_04805 PF08241 Methyltransferase domain AFL94_04810 PF00312 Ribosomal protein S15 AFL94_04815 PF01965 DJ-1/PfpI family AFL94_04820 PF09900 AFL94_04820 AFL94_04825 PF00266 Aminotransferase class-V AFL94_04830 PF02016 LD-carboxypeptidase AFL94_04835 PF14110 AFL94_04835 AFL94_04845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_04845 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_04845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_04850 PF12833 Helix-turn-helix domain AFL94_04850 PF14525 AFL94_04850 AFL94_04860 PF01370 NAD dependent epimerase/dehydratase family AFL94_04865 PF00501 AMP-binding enzyme AFL94_04865 PF00561 alpha/beta hydrolase fold AFL94_04870 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFL94_04870 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFL94_04875 PF07929 Plasmid pRiA4b ORF-3-like protein AFL94_04880 PF00582 Universal stress protein family AFL94_04890 PF07331 AFL94_04890 AFL94_04895 PF03401 Tripartite tricarboxylate transporter family receptor AFL94_04900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_04900 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFL94_04900 PF17203 AFL94_04900 AFL94_04905 PF00072 Response regulator receiver domain AFL94_04905 PF08279 HTH domain AFL94_04910 PF03747 ADP-ribosylglycohydrolase AFL94_04915 PF07690 Major Facilitator Superfamily AFL94_04920 PF00392 Bacterial regulatory proteins, gntR family AFL94_04920 PF07729 FCD domain AFL94_04925 PF00013 KH domain AFL94_04925 PF00575 S1 RNA binding domain AFL94_04925 PF01138 3' exoribonuclease family, domain 1 AFL94_04925 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFL94_04935 PF13279 Thioesterase-like superfamily AFL94_04940 PF12833 Helix-turn-helix domain AFL94_04940 PF14525 AFL94_04940 AFL94_04945 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_04955 PF01613 Flavin reductase like domain AFL94_04960 PF13450 NAD(P)-binding Rossmann-like domain AFL94_04965 PF04199 Putative cyclase AFL94_04970 PF01613 Flavin reductase like domain AFL94_04975 PF00296 Luciferase-like monooxygenase AFL94_04980 PF12833 Helix-turn-helix domain AFL94_04985 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_04985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_04985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_05000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_05000 PF01494 FAD binding domain AFL94_05005 PF00501 AMP-binding enzyme AFL94_05005 PF13193 AMP-binding enzyme C-terminal domain AFL94_05010 PF13622 Thioesterase-like superfamily AFL94_05015 PF07883 Cupin domain AFL94_05020 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_05025 PF01042 Endoribonuclease L-PSP AFL94_05030 PF07848 PaaX-like protein AFL94_05030 PF08223 PaaX-like protein C-terminal domain AFL94_05035 PF01048 Phosphorylase superfamily AFL94_05040 PF02664 S-Ribosylhomocysteinase (LuxS) AFL94_05050 PF08242 Methyltransferase domain AFL94_05050 PF12623 RNA repair, ligase-Pnkp-associating, region of Hen1 AFL94_05055 PF00149 Calcineurin-like phosphoesterase AFL94_05055 PF13671 AAA domain AFL94_05055 PF16536 AFL94_05055 AFL94_05055 PF16542 AFL94_05055 AFL94_05060 PF00890 FAD binding domain AFL94_05065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_05065 PF03466 LysR substrate binding domain AFL94_05070 PF00083 Sugar (and other) transporter AFL94_05070 PF07690 Major Facilitator Superfamily AFL94_05075 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_05080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_05080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_05090 PF00890 FAD binding domain AFL94_05095 PF03795 YCII-related domain AFL94_05100 PF00107 Zinc-binding dehydrogenase AFL94_05100 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_05105 PF00890 FAD binding domain AFL94_05110 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_05120 PF00675 Insulinase (Peptidase family M16) AFL94_05120 PF05193 Peptidase M16 inactive domain AFL94_05135 PF01113 Dihydrodipicolinate reductase, N-terminus AFL94_05135 PF05173 Dihydrodipicolinate reductase, C-terminus AFL94_05145 PF07786 AFL94_05145 AFL94_05150 PF00701 Dihydrodipicolinate synthetase family AFL94_05155 PF00753 Metallo-beta-lactamase superfamily AFL94_05155 PF07521 RNA-metabolising metallo-beta-lactamase AFL94_05170 PF05154 AFL94_05170 AFL94_05175 PF00005 ABC transporter AFL94_05180 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_05190 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFL94_05195 PF01580 FtsK/SpoIIIE family AFL94_05195 PF09397 Ftsk gamma domain AFL94_05195 PF13491 AFL94_05195 AFL94_05200 PF01066 CDP-alcohol phosphatidyltransferase AFL94_05205 PF02464 Competence-damaged protein AFL94_05210 PF13560 Helix-turn-helix domain AFL94_05215 PF11248 AFL94_05215 AFL94_05220 PF00154 recA bacterial DNA recombination protein AFL94_05225 PF02631 RecX family AFL94_05230 PF00919 Uncharacterized protein family UPF0004 AFL94_05230 PF04055 Radical SAM superfamily AFL94_05235 PF01715 IPP transferase AFL94_05240 PF01678 Diaminopimelate epimerase AFL94_05245 PF05175 Methyltransferase small domain AFL94_05250 PF01926 50S ribosome-binding GTPase AFL94_05250 PF13167 AFL94_05250 AFL94_05250 PF16360 AFL94_05250 AFL94_05255 PF13307 Helicase C-terminal domain AFL94_05260 PF00717 Peptidase S24-like AFL94_05260 PF01726 LexA DNA binding domain AFL94_05265 PF01476 LysM domain AFL94_05270 PF00155 Aminotransferase class I and II AFL94_05275 PF00475 Imidazoleglycerol-phosphate dehydratase AFL94_05280 PF00117 Glutamine amidotransferase class-I AFL94_05285 PF00977 Histidine biosynthesis protein AFL94_05290 PF07179 AFL94_05290 AFL94_05295 PF07690 Major Facilitator Superfamily AFL94_05305 PF00707 Translation initiation factor IF-3, C-terminal domain AFL94_05305 PF05198 Translation initiation factor IF-3, N-terminal domain AFL94_05310 PF01632 Ribosomal protein L35 AFL94_05315 PF00453 Ribosomal protein L20 AFL94_05320 PF00588 SpoU rRNA Methylase family AFL94_05320 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFL94_05325 PF00293 NUDIX domain AFL94_05335 PF01409 tRNA synthetases class II core domain (F) AFL94_05335 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFL94_05340 PF01588 Putative tRNA binding domain AFL94_05340 PF03147 Ferredoxin-fold anticodon binding domain AFL94_05340 PF03483 B3/4 domain AFL94_05340 PF03484 tRNA synthetase B5 domain AFL94_05345 PF13649 Methyltransferase domain AFL94_05355 PF13302 Acetyltransferase (GNAT) domain AFL94_05360 PF00156 Phosphoribosyl transferase domain AFL94_05365 PF03551 Transcriptional regulator PadR-like family AFL94_05375 PF17173 AFL94_05375 AFL94_05380 PF04909 Amidohydrolase AFL94_05390 PF00107 Zinc-binding dehydrogenase AFL94_05390 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_05395 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFL94_05395 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFL94_05400 PF01960 ArgJ family AFL94_05405 PF00696 Amino acid kinase family AFL94_05410 PF00202 Aminotransferase class-III AFL94_05415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFL94_05415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFL94_05420 PF01316 Arginine repressor, DNA binding domain AFL94_05420 PF02863 Arginine repressor, C-terminal domain AFL94_05425 PF01661 Macro domain AFL94_05430 PF00206 Lyase AFL94_05430 PF14698 Argininosuccinate lyase C-terminal AFL94_05435 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFL94_05440 PF00156 Phosphoribosyl transferase domain AFL94_05445 PF13245 Part of AAA domain AFL94_05450 PF00579 tRNA synthetases class I (W and Y) AFL94_05480 PF13242 HAD-hyrolase-like AFL94_05480 PF13344 Haloacid dehalogenase-like hydrolase AFL94_05490 PF01479 S4 domain AFL94_05490 PF01728 FtsJ-like methyltransferase AFL94_05495 PF01513 ATP-NAD kinase AFL94_05500 PF02463 RecF/RecN/SMC N terminal domain AFL94_05505 PF00117 Glutamine amidotransferase class-I AFL94_05505 PF06418 CTP synthase N-terminus AFL94_05510 PF00293 NUDIX domain AFL94_05515 PF00589 Phage integrase family AFL94_05515 PF02899 Phage integrase, N-terminal SAM-like domain AFL94_05520 PF00293 NUDIX domain AFL94_05525 PF13443 Cro/C1-type HTH DNA-binding domain AFL94_05530 PF11188 AFL94_05530 AFL94_05535 PF00285 Citrate synthase AFL94_05540 PF13714 Phosphoenolpyruvate phosphomutase AFL94_05545 PF03972 MmgE/PrpD family AFL94_05550 PF00392 Bacterial regulatory proteins, gntR family AFL94_05550 PF07729 FCD domain AFL94_05555 PF00501 AMP-binding enzyme AFL94_05555 PF13193 AMP-binding enzyme C-terminal domain AFL94_05555 PF16177 AFL94_05555 AFL94_05560 PF01988 AFL94_05560 AFL94_05565 PF00072 Response regulator receiver domain AFL94_05565 PF08279 HTH domain AFL94_05570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_05570 PF13188 PAS domain AFL94_05570 PF17203 AFL94_05570 AFL94_05575 PF00375 Sodium:dicarboxylate symporter family AFL94_05585 PF13614 AAA domain AFL94_05590 PF02616 ScpA/B protein AFL94_05595 PF04079 Putative transcriptional regulators (Ypuh-like) AFL94_05600 PF00849 RNA pseudouridylate synthase AFL94_05600 PF01479 S4 domain AFL94_05605 PF02153 Prephenate dehydrogenase AFL94_05610 PF02224 Cytidylate kinase AFL94_05615 PF01926 50S ribosome-binding GTPase AFL94_05615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFL94_05625 PF02567 Phenazine biosynthesis-like protein AFL94_05635 PF00005 ABC transporter AFL94_05640 PF01494 FAD binding domain AFL94_05640 PF07976 Phenol hydroxylase, C-terminal dimerisation domain AFL94_05645 PF04343 AFL94_05645 AFL94_05650 PF16697 AFL94_05650 AFL94_05655 PF00376 MerR family regulatory protein AFL94_05660 PF02577 Bifunctional nuclease AFL94_05665 PF13411 MerR HTH family regulatory protein AFL94_05670 PF13614 AAA domain AFL94_05675 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFL94_05675 PF00364 Biotin-requiring enzyme AFL94_05675 PF00682 HMGL-like AFL94_05675 PF02436 Conserved carboxylase domain AFL94_05675 PF02785 Biotin carboxylase C-terminal domain AFL94_05675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_05685 PF00501 AMP-binding enzyme AFL94_05695 PF12146 Putative lysophospholipase AFL94_05700 PF01553 Acyltransferase AFL94_05705 PF01474 Class-II DAHP synthetase family AFL94_05715 PF02467 AFL94_05715 AFL94_05725 PF01580 FtsK/SpoIIIE family AFL94_05725 PF16697 AFL94_05725 AFL94_05730 PF00437 Type II/IV secretion system protein AFL94_05735 PF00482 Type II secretion system (T2SS), protein F AFL94_05740 PF00482 Type II secretion system (T2SS), protein F AFL94_05750 PF07811 AFL94_05750 AFL94_05765 PF00472 RF-1 domain AFL94_05765 PF03462 PCRF domain AFL94_05770 PF00005 ABC transporter AFL94_05775 PF02687 AFL94_05775 AFL94_05780 PF01551 Peptidase family M23 AFL94_05785 PF01668 SmpB protein AFL94_05790 PF10823 AFL94_05790 AFL94_05795 PF02537 AFL94_05795 AFL94_05800 PF02537 AFL94_05800 AFL94_05805 PF00582 Universal stress protein family AFL94_05810 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFL94_05810 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_05810 PF04023 FeoA domain AFL94_05815 PF00459 Inositol monophosphatase family AFL94_05820 PF03193 Protein of unknown function, DUF258 AFL94_05825 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFL94_05830 PF04542 Sigma-70 region 2 AFL94_05830 PF08281 Sigma-70, region 4 AFL94_05835 PF13490 Putative zinc-finger AFL94_05840 PF13472 GDSL-like Lipase/Acylhydrolase family AFL94_05845 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_05845 PF00676 Dehydrogenase E1 component AFL94_05845 PF02779 Transketolase, pyrimidine binding domain AFL94_05845 PF16078 AFL94_05845 AFL94_05845 PF16870 AFL94_05845 AFL94_05850 PF00571 CBS domain AFL94_05850 PF01595 AFL94_05850 AFL94_05850 PF03471 Transporter associated domain AFL94_05855 PF00571 CBS domain AFL94_05855 PF01595 AFL94_05855 AFL94_05860 PF00005 ABC transporter AFL94_05865 PF00950 AFL94_05865 AFL94_05880 PF01475 Ferric uptake regulator family AFL94_05885 PF13483 Beta-lactamase superfamily domain AFL94_05890 PF00581 Rhodanese-like domain AFL94_05895 PF01230 HIT domain AFL94_05900 PF00270 DEAD/DEAH box helicase AFL94_05900 PF00271 Helicase conserved C-terminal domain AFL94_05900 PF04408 Helicase associated domain (HA2) AFL94_05900 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AFL94_05900 PF11898 AFL94_05900 AFL94_05905 PF04392 ABC transporter substrate binding protein AFL94_05910 PF02653 AFL94_05910 AFL94_05915 PF00005 ABC transporter AFL94_05925 PF00750 tRNA synthetases class I (R) AFL94_05925 PF03485 Arginyl tRNA synthetase N terminal domain AFL94_05925 PF05746 DALR anticodon binding domain AFL94_05930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFL94_05930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFL94_05935 PF00742 Homoserine dehydrogenase AFL94_05935 PF01842 ACT domain AFL94_05935 PF03447 Homoserine dehydrogenase, NAD binding domain AFL94_05940 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_05945 PF00288 GHMP kinases N terminal domain AFL94_05945 PF08544 GHMP kinases C terminal AFL94_05950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_05950 PF07497 Rho termination factor, RNA-binding domain AFL94_05950 PF07498 Rho termination factor, N-terminal domain AFL94_05955 PF00472 RF-1 domain AFL94_05955 PF03462 PCRF domain AFL94_05960 PF05175 Methyltransferase small domain AFL94_05965 PF01300 Telomere recombination AFL94_05970 PF00953 Glycosyl transferase family 4 AFL94_05980 PF00119 ATP synthase A chain AFL94_05985 PF00137 ATP synthase subunit C AFL94_05990 PF00430 ATP synthase B/B' CF(0) AFL94_05995 PF00213 ATP synthase delta (OSCP) subunit AFL94_06000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_06000 PF00306 ATP synthase alpha/beta chain, C terminal domain AFL94_06000 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFL94_06005 PF00231 ATP synthase AFL94_06010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_06010 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFL94_06015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFL94_06020 PF10739 AFL94_06020 AFL94_06025 PF01979 Amidohydrolase family AFL94_06030 PF01939 Protein of unknown function DUF91 AFL94_06040 PF01594 AFL94_06040 AFL94_06050 PF14561 Tetratricopeptide repeat AFL94_06055 PF00005 ABC transporter AFL94_06065 PF02720 AFL94_06065 AFL94_06070 PF11238 AFL94_06070 AFL94_06075 PF04851 Type III restriction enzyme, res subunit AFL94_06080 PF09924 Uncharacterized conserved protein (DUF2156) AFL94_06095 PF00857 Isochorismatase family AFL94_06100 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AFL94_06105 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFL94_06110 PF09438 AFL94_06110 AFL94_06115 PF01177 Asp/Glu/Hydantoin racemase AFL94_06120 PF12706 Beta-lactamase superfamily domain AFL94_06125 PF05232 AFL94_06125 AFL94_06135 PF01227 GTP cyclohydrolase I AFL94_06140 PF07681 AFL94_06140 AFL94_06145 PF12840 Helix-turn-helix domain AFL94_06150 PF01138 3' exoribonuclease family, domain 1 AFL94_06150 PF03725 3' exoribonuclease family, domain 2 AFL94_06155 PF01725 Ham1 family AFL94_06160 PF00392 Bacterial regulatory proteins, gntR family AFL94_06165 PF00005 ABC transporter AFL94_06175 PF00533 BRCA1 C Terminus (BRCT) domain AFL94_06175 PF00929 Exonuclease AFL94_06190 PF00149 Calcineurin-like phosphoesterase AFL94_06190 PF12320 Type 5 capsule protein repressor C-terminal domain AFL94_06195 PF13476 AAA domain AFL94_06195 PF13558 Putative exonuclease SbcCD, C subunit AFL94_06200 PF07690 Major Facilitator Superfamily AFL94_06205 PF09339 IclR helix-turn-helix domain AFL94_06210 PF07690 Major Facilitator Superfamily AFL94_06215 PF00356 Bacterial regulatory proteins, lacI family AFL94_06215 PF13377 Periplasmic binding protein-like domain AFL94_06220 PF00128 Alpha amylase, catalytic domain AFL94_06225 PF13416 Bacterial extracellular solute-binding protein AFL94_06230 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_06230 PF16296 AFL94_06230 AFL94_06235 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_06245 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFL94_06250 PF07690 Major Facilitator Superfamily AFL94_06255 PF03724 META domain AFL94_06260 PF02720 AFL94_06260 AFL94_06265 PF11238 AFL94_06265 AFL94_06270 PF04851 Type III restriction enzyme, res subunit AFL94_06275 PF09924 Uncharacterized conserved protein (DUF2156) AFL94_06290 PF00857 Isochorismatase family AFL94_06295 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AFL94_06300 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFL94_06305 PF09438 AFL94_06305 AFL94_06310 PF01177 Asp/Glu/Hydantoin racemase AFL94_06315 PF12706 Beta-lactamase superfamily domain AFL94_06320 PF05232 AFL94_06320 AFL94_06330 PF01227 GTP cyclohydrolase I AFL94_06335 PF07681 AFL94_06335 AFL94_06340 PF12840 Helix-turn-helix domain AFL94_06345 PF01138 3' exoribonuclease family, domain 1 AFL94_06345 PF03725 3' exoribonuclease family, domain 2 AFL94_06350 PF01725 Ham1 family AFL94_06355 PF00392 Bacterial regulatory proteins, gntR family AFL94_06360 PF00005 ABC transporter AFL94_06370 PF00533 BRCA1 C Terminus (BRCT) domain AFL94_06370 PF00929 Exonuclease AFL94_06385 PF00149 Calcineurin-like phosphoesterase AFL94_06385 PF12320 Type 5 capsule protein repressor C-terminal domain AFL94_06390 PF13476 AAA domain AFL94_06390 PF13558 Putative exonuclease SbcCD, C subunit AFL94_06395 PF07690 Major Facilitator Superfamily AFL94_06400 PF09339 IclR helix-turn-helix domain AFL94_06405 PF07690 Major Facilitator Superfamily AFL94_06410 PF00356 Bacterial regulatory proteins, lacI family AFL94_06410 PF13377 Periplasmic binding protein-like domain AFL94_06415 PF00128 Alpha amylase, catalytic domain AFL94_06420 PF13416 Bacterial extracellular solute-binding protein AFL94_06425 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_06425 PF16296 AFL94_06425 AFL94_06430 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_06440 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFL94_06445 PF07690 Major Facilitator Superfamily AFL94_06450 PF03724 META domain AFL94_06455 PF00487 AFL94_06455 AFL94_06460 PF00005 ABC transporter AFL94_06465 PF00156 Phosphoribosyl transferase domain AFL94_06470 PF13328 HD domain AFL94_06475 PF03724 META domain AFL94_06480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_06485 PF00171 Aldehyde dehydrogenase family AFL94_06490 PF00392 Bacterial regulatory proteins, gntR family AFL94_06490 PF07729 FCD domain AFL94_06495 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_06495 PF03737 Demethylmenaquinone methyltransferase AFL94_06500 PF02720 AFL94_06500 AFL94_06510 PF00920 Dehydratase family AFL94_06515 PF13560 Helix-turn-helix domain AFL94_06525 PF12697 Alpha/beta hydrolase family AFL94_06530 PF00293 NUDIX domain AFL94_06535 PF02445 Quinolinate synthetase A protein AFL94_06545 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFL94_06545 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFL94_06550 PF00266 Aminotransferase class-V AFL94_06555 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFL94_06555 PF03033 Glycosyltransferase family 28 N-terminal domain AFL94_06560 PF00440 Bacterial regulatory proteins, tetR family AFL94_06560 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFL94_06565 PF07690 Major Facilitator Superfamily AFL94_06570 PF00583 Acetyltransferase (GNAT) family AFL94_06575 PF01872 RibD C-terminal domain AFL94_06580 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFL94_06585 PF12802 MarR family AFL94_06590 PF00296 Luciferase-like monooxygenase AFL94_06595 PF02623 FliW protein AFL94_06600 PF00669 Bacterial flagellin N-terminal helical region AFL94_06600 PF00700 Bacterial flagellin C-terminal helical region AFL94_06605 PF00460 Flagella basal body rod protein AFL94_06605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_06610 PF05130 FlgN protein AFL94_06615 PF04539 Sigma-70 region 3 AFL94_06615 PF04542 Sigma-70 region 2 AFL94_06620 PF00669 Bacterial flagellin N-terminal helical region AFL94_06620 PF00700 Bacterial flagellin C-terminal helical region AFL94_06625 PF02465 AFL94_06625 AFL94_06625 PF07195 AFL94_06625 AFL94_06625 PF07196 Flagellin hook IN motif AFL94_06630 PF02561 Flagellar protein FliS AFL94_06640 PF00460 Flagella basal body rod protein AFL94_06645 PF00460 Flagella basal body rod protein AFL94_06645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_06650 PF02049 AFL94_06650 AFL94_06655 PF01514 Secretory protein of YscJ/FliF family AFL94_06655 PF08345 AFL94_06655 AFL94_06660 PF01706 FliG C-terminal domain AFL94_06660 PF14841 FliG middle domain AFL94_06660 PF14842 FliG N-terminal domain AFL94_06665 PF02108 AFL94_06665 AFL94_06670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_06675 PF02050 Flagellar FliJ protein AFL94_06680 PF00877 NlpC/P60 family AFL94_06685 PF02120 Flagellar hook-length control protein FliK AFL94_06695 PF00460 Flagella basal body rod protein AFL94_06695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_06700 PF06289 AFL94_06700 AFL94_06705 PF01618 AFL94_06705 AFL94_06710 PF00691 OmpA family AFL94_06710 PF13677 AFL94_06710 AFL94_06715 PF01052 Surface presentation of antigens (SPOA) AFL94_06715 PF02154 Flagellar motor switch protein FliM AFL94_06720 PF01052 Surface presentation of antigens (SPOA) AFL94_06725 PF04347 AFL94_06725 AFL94_06730 PF00813 AFL94_06730 AFL94_06735 PF01313 AFL94_06735 AFL94_06740 PF01311 AFL94_06740 AFL94_06745 PF01312 FlhB HrpN YscU SpaS Family AFL94_06750 PF00771 FHIPEP family AFL94_06760 PF02599 Global regulator protein family AFL94_06770 PF05239 PRC-barrel domain AFL94_06770 PF09557 AFL94_06770 AFL94_06780 PF00873 AcrB/AcrD/AcrF family AFL94_06795 PF06039 AFL94_06795 AFL94_06805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_06830 PF00578 AhpC/TSA family AFL94_06840 PF12802 MarR family AFL94_06845 PF11066 AFL94_06845 AFL94_06845 PF13460 NADH(P)-binding AFL94_06870 PF01593 Flavin containing amine oxidoreductase AFL94_06885 PF01040 UbiA prenyltransferase family AFL94_06890 PF00293 NUDIX domain AFL94_06900 PF00563 EAL domain AFL94_06900 PF00990 GGDEF domain AFL94_06905 PF03170 Bacterial cellulose synthase subunit AFL94_06915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFL94_06915 PF13641 Glycosyltransferase like family 2 AFL94_06925 PF00920 Dehydratase family AFL94_06930 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_06930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_06930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_06935 PF10369 Small subunit of acetolactate synthase AFL94_06935 PF13710 ACT domain AFL94_06940 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFL94_06940 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AFL94_06945 PF08241 Methyltransferase domain AFL94_06955 PF00483 Nucleotidyl transferase AFL94_06960 PF16363 AFL94_06960 AFL94_06965 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFL94_06965 PF04321 RmlD substrate binding domain AFL94_06970 PF00196 Bacterial regulatory proteins, luxR family AFL94_06975 PF00196 Bacterial regulatory proteins, luxR family AFL94_06980 PF02397 AFL94_06980 AFL94_06985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_06990 PF01370 NAD dependent epimerase/dehydratase family AFL94_06995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFL94_07005 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFL94_07010 PF13440 AFL94_07010 AFL94_07015 PF13439 Glycosyltransferase Family 4 AFL94_07015 PF13692 Glycosyl transferases group 1 AFL94_07020 PF13692 Glycosyl transferases group 1 AFL94_07030 PF11316 AFL94_07030 AFL94_07045 PF00535 Glycosyl transferase family 2 AFL94_07055 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_07055 PF14602 Hexapeptide repeat of succinyl-transferase AFL94_07065 PF07690 Major Facilitator Superfamily AFL94_07080 PF01467 Cytidylyltransferase AFL94_07090 PF08660 AFL94_07090 AFL94_07110 PF01066 CDP-alcohol phosphatidyltransferase AFL94_07115 PF00535 Glycosyl transferase family 2 AFL94_07125 PF01943 AFL94_07125 AFL94_07125 PF14667 Polysaccharide biosynthesis C-terminal domain AFL94_07130 PF00722 Glycosyl hydrolases family 16 AFL94_07135 PF01548 AFL94_07135 AFL94_07135 PF02371 AFL94_07135 AFL94_07140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFL94_07140 PF01842 ACT domain AFL94_07140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_07155 PF01695 IstB-like ATP binding protein AFL94_07190 PF01936 NYN domain AFL94_07195 PF09334 tRNA synthetases class I (M) AFL94_07200 PF00072 Response regulator receiver domain AFL94_07200 PF00196 Bacterial regulatory proteins, luxR family AFL94_07205 PF07730 Histidine kinase AFL94_07210 PF00180 Isocitrate/isopropylmalate dehydrogenase AFL94_07215 PF01063 Aminotransferase class IV AFL94_07220 PF16363 AFL94_07220 AFL94_07225 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_07225 PF10370 Domain of unknown function (DUF2437) AFL94_07230 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFL94_07235 PF13419 Haloacid dehalogenase-like hydrolase AFL94_07255 PF00350 Dynamin family AFL94_07260 PF01926 50S ribosome-binding GTPase AFL94_07265 PF00586 AIR synthase related protein, N-terminal domain AFL94_07265 PF02769 AIR synthase related protein, C-terminal domain AFL94_07275 PF00330 Aconitase family (aconitate hydratase) AFL94_07280 PF00694 Aconitase C-terminal domain AFL94_07285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFL94_07290 PF01553 Acyltransferase AFL94_07295 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFL94_07295 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFL94_07300 PF01820 D-ala D-ala ligase N-terminus AFL94_07300 PF07478 D-ala D-ala ligase C-terminus AFL94_07305 PF12028 AFL94_07305 AFL94_07310 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_07315 PF02734 DAK2 domain AFL94_07315 PF13684 Dihydroxyacetone kinase family AFL94_07320 PF00270 DEAD/DEAH box helicase AFL94_07320 PF00271 Helicase conserved C-terminal domain AFL94_07320 PF17191 AFL94_07320 AFL94_07325 PF03602 Conserved hypothetical protein 95 AFL94_07335 PF00155 Aminotransferase class I and II AFL94_07340 PF01467 Cytidylyltransferase AFL94_07345 PF00483 Nucleotidyl transferase AFL94_07350 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_07355 PF01061 AFL94_07355 AFL94_07360 PF00005 ABC transporter AFL94_07365 PF00535 Glycosyl transferase family 2 AFL94_07375 PF01467 Cytidylyltransferase AFL94_07385 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AFL94_07395 PF00665 Integrase core domain AFL94_07400 PF01527 Transposase AFL94_07405 PF11380 AFL94_07405 AFL94_07405 PF17101 AFL94_07405 AFL94_07405 PF17102 AFL94_07405 AFL94_07405 PF17103 AFL94_07405 AFL94_07410 PF04991 AFL94_07410 AFL94_07420 PF00035 Double-stranded RNA binding motif AFL94_07420 PF14622 Ribonuclease-III-like AFL94_07425 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFL94_07425 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_07430 PF00144 Beta-lactamase AFL94_07435 PF02463 RecF/RecN/SMC N terminal domain AFL94_07435 PF06470 SMC proteins Flexible Hinge Domain AFL94_07440 PF07690 Major Facilitator Superfamily AFL94_07445 PF00448 SRP54-type protein, GTPase domain AFL94_07445 PF02881 SRP54-type protein, helical bundle domain AFL94_07450 PF01757 AFL94_07450 AFL94_07455 PF00909 Ammonium Transporter Family AFL94_07465 PF00448 SRP54-type protein, GTPase domain AFL94_07465 PF02881 SRP54-type protein, helical bundle domain AFL94_07465 PF02978 Signal peptide binding domain AFL94_07480 PF00501 AMP-binding enzyme AFL94_07480 PF13193 AMP-binding enzyme C-terminal domain AFL94_07485 PF00501 AMP-binding enzyme AFL94_07485 PF13193 AMP-binding enzyme C-terminal domain AFL94_07490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_07525 PF13091 PLD-like domain AFL94_07525 PF13396 AFL94_07525 AFL94_07530 PF00108 Thiolase, N-terminal domain AFL94_07530 PF02803 Thiolase, C-terminal domain AFL94_07535 PF04261 Dyp-type peroxidase family AFL94_07540 PF09375 Imelysin AFL94_07540 PF13473 Cupredoxin-like domain AFL94_07545 PF03239 AFL94_07545 AFL94_07565 PF09594 AFL94_07565 AFL94_07585 PF00929 Exonuclease AFL94_07600 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_07600 PF13602 Zinc-binding dehydrogenase AFL94_07610 PF00196 Bacterial regulatory proteins, luxR family AFL94_07615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_07615 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_07615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_07620 PF01327 Polypeptide deformylase AFL94_07655 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFL94_07655 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFL94_07660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_07660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_07665 PF03883 AFL94_07665 AFL94_07670 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_07675 PF01784 NIF3 (NGG1p interacting factor 3) AFL94_07680 PF01625 Peptide methionine sulfoxide reductase AFL94_07685 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_07690 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_07695 PF00375 Sodium:dicarboxylate symporter family AFL94_07700 PF00005 ABC transporter AFL94_07705 PF00583 Acetyltransferase (GNAT) family AFL94_07715 PF13649 Methyltransferase domain AFL94_07720 PF00107 Zinc-binding dehydrogenase AFL94_07720 PF16884 AFL94_07720 AFL94_07725 PF06993 AFL94_07725 AFL94_07730 PF00440 Bacterial regulatory proteins, tetR family AFL94_07735 PF14262 Domain of unknown function (DUF4353) AFL94_07740 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFL94_07740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_07745 PF00392 Bacterial regulatory proteins, gntR family AFL94_07745 PF07729 FCD domain AFL94_07750 PF02447 AFL94_07750 AFL94_07755 PF01202 Shikimate kinase AFL94_07760 PF04226 AFL94_07760 AFL94_07765 PF07510 AFL94_07765 AFL94_07770 PF03006 AFL94_07770 AFL94_07775 PF05532 CsbD-like AFL94_07785 PF01594 AFL94_07785 AFL94_07800 PF00578 AhpC/TSA family AFL94_07805 PF11253 AFL94_07805 AFL94_07810 PF00456 Transketolase, thiamine diphosphate binding domain AFL94_07815 PF13556 PucR C-terminal helix-turn-helix domain AFL94_07820 PF00698 Acyl transferase domain AFL94_07825 PF00550 Phosphopantetheine attachment site AFL94_07830 PF00109 Beta-ketoacyl synthase, N-terminal domain AFL94_07830 PF02801 Beta-ketoacyl synthase, C-terminal domain AFL94_07835 PF01872 RibD C-terminal domain AFL94_07845 PF11343 AFL94_07845 AFL94_07850 PF00589 Phage integrase family AFL94_07850 PF02899 Phage integrase, N-terminal SAM-like domain AFL94_07855 PF02481 DNA recombination-mediator protein A AFL94_07860 PF01078 Magnesium chelatase, subunit ChlI AFL94_07860 PF13335 AFL94_07860 AFL94_07860 PF13541 Subunit ChlI of Mg-chelatase AFL94_07865 PF02021 Uncharacterised protein family UPF0102 AFL94_07870 PF10611 AFL94_07870 AFL94_07875 PF01351 Ribonuclease HII AFL94_07880 PF00717 Peptidase S24-like AFL94_07890 PF00717 Peptidase S24-like AFL94_07890 PF10502 Signal peptidase, peptidase S26 AFL94_07895 PF01245 Ribosomal protein L19 AFL94_07900 PF01746 tRNA (Guanine-1)-methyltransferase AFL94_07905 PF01782 RimM N-terminal domain AFL94_07910 PF13083 KH domain AFL94_07915 PF00886 Ribosomal protein S16 AFL94_07920 PF01810 AFL94_07920 AFL94_07940 PF09852 AFL94_07940 AFL94_07945 PF04892 AFL94_07945 AFL94_07945 PF06271 AFL94_07945 AFL94_07950 PF10935 AFL94_07950 AFL94_07955 PF04607 Region found in RelA / SpoT proteins AFL94_07960 PF00005 ABC transporter AFL94_07960 PF12848 ABC transporter AFL94_07970 PF02104 AFL94_07970 AFL94_07985 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_07990 PF00106 short chain dehydrogenase AFL94_07995 PF12802 MarR family AFL94_08000 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFL94_08005 PF06993 AFL94_08005 AFL94_08010 PF04294 AFL94_08010 AFL94_08010 PF12229 Putative peptidoglycan binding domain AFL94_08015 PF12710 haloacid dehalogenase-like hydrolase AFL94_08020 PF00005 ABC transporter AFL94_08025 PF01925 AFL94_08025 AFL94_08030 PF00588 SpoU rRNA Methylase family AFL94_08035 PF01197 Ribosomal protein L31 AFL94_08040 PF00107 Zinc-binding dehydrogenase AFL94_08045 PF03099 Biotin/lipoate A/B protein ligase family AFL94_08055 PF01433 Peptidase family M1 AFL94_08055 PF11838 ERAP1-like C-terminal domain AFL94_08065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_08080 PF00583 Acetyltransferase (GNAT) family AFL94_08085 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_08095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_08095 PF01756 Acyl-CoA oxidase AFL94_08095 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_08095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_08100 PF00440 Bacterial regulatory proteins, tetR family AFL94_08105 PF00108 Thiolase, N-terminal domain AFL94_08105 PF02803 Thiolase, C-terminal domain AFL94_08110 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_08115 PF01575 MaoC like domain AFL94_08120 PF00534 Glycosyl transferases group 1 AFL94_08120 PF13439 Glycosyltransferase Family 4 AFL94_08125 PF00561 alpha/beta hydrolase fold AFL94_08135 PF00890 FAD binding domain AFL94_08140 PF03807 NADP oxidoreductase coenzyme F420-dependent AFL94_08145 PF01566 AFL94_08145 AFL94_08150 PF00072 Response regulator receiver domain AFL94_08150 PF00486 Transcriptional regulatory protein, C terminal AFL94_08155 PF00512 His Kinase A (phospho-acceptor) domain AFL94_08155 PF00672 HAMP domain AFL94_08155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_08160 PF16868 AFL94_08160 AFL94_08165 PF01546 Peptidase family M20/M25/M40 AFL94_08165 PF07687 Peptidase dimerisation domain AFL94_08170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_08170 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_08185 PF02673 AFL94_08185 AFL94_08190 PF01406 tRNA synthetases class I (C) catalytic domain AFL94_08195 PF09754 PAC2 family AFL94_08200 PF13419 Haloacid dehalogenase-like hydrolase AFL94_08210 PF08704 tRNA methyltransferase complex GCD14 subunit AFL94_08210 PF14801 tRNA methyltransferase complex GCD14 subunit N-term AFL94_08215 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_08215 PF16450 AFL94_08215 AFL94_08220 PF03136 Pup-ligase protein AFL94_08225 PF05639 Pup-like protein AFL94_08230 PF03136 Pup-ligase protein AFL94_08235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_08240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_08245 PF13280 AFL94_08245 AFL94_08255 PF02416 mttA/Hcf106 family AFL94_08260 PF00902 Sec-independent protein translocase protein (TatC) AFL94_08265 PF00270 DEAD/DEAH box helicase AFL94_08265 PF08148 DSHCT (NUC185) domain AFL94_08265 PF13234 rRNA-processing arch domain AFL94_08270 PF07969 Amidohydrolase family AFL94_08275 PF00535 Glycosyl transferase family 2 AFL94_08280 PF13397 Domain of unknown function (DUF4109) AFL94_08285 PF01145 SPFH domain / Band 7 family AFL94_08290 PF01957 NfeD-like C-terminal, partner-binding AFL94_08300 PF01327 Polypeptide deformylase AFL94_08305 PF03969 AFG1-like ATPase AFL94_08310 PF01022 Bacterial regulatory protein, arsR family AFL94_08315 PF01872 RibD C-terminal domain AFL94_08320 PF01872 RibD C-terminal domain AFL94_08325 PF01758 Sodium Bile acid symporter family AFL94_08330 PF11255 AFL94_08330 AFL94_08340 PF04545 Sigma-70, region 4 AFL94_08345 PF01037 AsnC family AFL94_08350 PF00591 Glycosyl transferase family, a/b domain AFL94_08350 PF02885 Glycosyl transferase family, helical bundle domain AFL94_08355 PF00510 Cytochrome c oxidase subunit III AFL94_08360 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFL94_08365 PF00355 Rieske [2Fe-2S] domain AFL94_08370 PF13631 Cytochrome b(N-terminal)/b6/petB AFL94_08380 PF00392 Bacterial regulatory proteins, gntR family AFL94_08380 PF07702 UTRA domain AFL94_08385 PF12270 AFL94_08385 AFL94_08390 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFL94_08395 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFL94_08395 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AFL94_08400 PF01521 Iron-sulphur cluster biosynthesis AFL94_08405 PF01546 Peptidase family M20/M25/M40 AFL94_08405 PF07687 Peptidase dimerisation domain AFL94_08410 PF11241 AFL94_08410 AFL94_08415 PF01180 Dihydroorotate dehydrogenase AFL94_08420 PF12146 Putative lysophospholipase AFL94_08425 PF01255 Putative undecaprenyl diphosphate synthase AFL94_08430 PF02565 Recombination protein O C terminal AFL94_08430 PF11967 Recombination protein O N terminal AFL94_08435 PF00682 HMGL-like AFL94_08435 PF08502 LeuA allosteric (dimerisation) domain AFL94_08445 PF01926 50S ribosome-binding GTPase AFL94_08445 PF07650 KH domain AFL94_08450 PF00571 CBS domain AFL94_08450 PF01595 AFL94_08450 AFL94_08450 PF03471 Transporter associated domain AFL94_08455 PF02130 Uncharacterized protein family UPF0054 AFL94_08460 PF02562 PhoH-like protein AFL94_08470 PF04452 RNA methyltransferase AFL94_08475 PF00226 DnaJ domain AFL94_08475 PF00684 DnaJ central domain AFL94_08475 PF01556 DnaJ C terminal domain AFL94_08480 PF01628 HrcA protein C terminal domain AFL94_08485 PF11296 AFL94_08485 AFL94_08490 PF09685 AFL94_08490 AFL94_08495 PF04055 Radical SAM superfamily AFL94_08500 PF00009 Elongation factor Tu GTP binding domain AFL94_08500 PF00679 Elongation factor G C-terminus AFL94_08500 PF06421 GTP-binding protein LepA C-terminus AFL94_08505 PF02452 PemK-like protein AFL94_08510 PF01649 Ribosomal protein S20 AFL94_08515 PF06144 DNA polymerase III, delta subunit AFL94_08520 PF00753 Metallo-beta-lactamase superfamily AFL94_08520 PF03772 AFL94_08520 AFL94_08525 PF10531 SLBB domain AFL94_08525 PF12836 Helix-hairpin-helix motif AFL94_08530 PF02645 Uncharacterised protein, DegV family COG1307 AFL94_08535 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_08535 PF08264 Anticodon-binding domain of tRNA AFL94_08535 PF09334 tRNA synthetases class I (M) AFL94_08535 PF13603 Leucyl-tRNA synthetase, Domain 2 AFL94_08550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFL94_08550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFL94_08555 PF00230 Major intrinsic protein AFL94_08560 PF01266 FAD dependent oxidoreductase AFL94_08560 PF16901 AFL94_08560 AFL94_08565 PF04198 Putative sugar-binding domain AFL94_08570 PF00561 alpha/beta hydrolase fold AFL94_08585 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFL94_08585 PF02772 S-adenosylmethionine synthetase, central domain AFL94_08585 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFL94_08590 PF02441 Flavoprotein AFL94_08590 PF04127 DNA / pantothenate metabolism flavoprotein AFL94_08595 PF01192 RNA polymerase Rpb6 AFL94_08600 PF00625 Guanylate kinase AFL94_08610 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFL94_08615 PF02142 MGS-like domain AFL94_08615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_08615 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFL94_08620 PF00117 Glutamine amidotransferase class-I AFL94_08620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFL94_08630 PF01979 Amidohydrolase family AFL94_08635 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFL94_08635 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFL94_08640 PF00156 Phosphoribosyl transferase domain AFL94_08645 PF01029 NusB family AFL94_08650 PF01132 Elongation factor P (EF-P) OB domain AFL94_08650 PF08207 Elongation factor P (EF-P) KOW-like domain AFL94_08650 PF09285 Elongation factor P, C-terminal AFL94_08660 PF01761 3-dehydroquinate synthase AFL94_08665 PF01202 Shikimate kinase AFL94_08670 PF01264 Chorismate synthase AFL94_08675 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_08680 PF02618 YceG-like family AFL94_08685 PF03652 Uncharacterised protein family (UPF0081) AFL94_08690 PF01411 tRNA synthetases class II (A) AFL94_08690 PF02272 DHHA1 domain AFL94_08690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_08700 PF06103 AFL94_08700 AFL94_08715 PF01551 Peptidase family M23 AFL94_08790 PF04883 AFL94_08790 AFL94_08815 PF09956 AFL94_08815 AFL94_08825 PF04233 AFL94_08825 AFL94_08835 PF03237 Terminase-like family AFL94_08835 PF17289 AFL94_08835 AFL94_08855 PF02237 Biotin protein ligase C terminal domain AFL94_08920 PF00145 C-5 cytosine-specific DNA methylase AFL94_08935 PF00436 Single-strand binding protein family AFL94_08940 PF13476 AAA domain AFL94_08960 PF12728 Helix-turn-helix domain AFL94_08970 PF01381 Helix-turn-helix AFL94_08980 PF06114 Domain of unknown function (DUF955) AFL94_08985 PF00589 Phage integrase family AFL94_08985 PF14659 Phage integrase, N-terminal SAM-like domain AFL94_08990 PF00163 Ribosomal protein S4/S9 N-terminal domain AFL94_08990 PF01479 S4 domain AFL94_08995 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_08995 PF12002 MgsA AAA+ ATPase C terminal AFL94_08995 PF16193 AFL94_08995 AFL94_09000 PF02580 D-Tyr-tRNA(Tyr) deacylase AFL94_09005 PF03551 Transcriptional regulator PadR-like family AFL94_09015 PF00152 tRNA synthetases class II (D, K and N) AFL94_09015 PF01336 OB-fold nucleic acid binding domain AFL94_09015 PF02938 GAD domain AFL94_09020 PF03129 Anticodon binding domain AFL94_09020 PF13393 Histidyl-tRNA synthetase AFL94_09025 PF03993 AFL94_09025 AFL94_09035 PF02824 TGS domain AFL94_09035 PF04607 Region found in RelA / SpoT proteins AFL94_09035 PF13291 ACT domain AFL94_09035 PF13328 HD domain AFL94_09040 PF02355 Protein export membrane protein AFL94_09040 PF07549 SecD/SecF GG Motif AFL94_09045 PF02355 Protein export membrane protein AFL94_09050 PF02699 Preprotein translocase subunit AFL94_09055 PF05491 Holliday junction DNA helicase ruvB C-terminus AFL94_09055 PF05496 Holliday junction DNA helicase ruvB N-terminus AFL94_09060 PF01330 RuvA N terminal domain AFL94_09060 PF07499 RuvA, C-terminal domain AFL94_09060 PF14520 Helix-hairpin-helix domain AFL94_09065 PF02075 Crossover junction endodeoxyribonuclease RuvC AFL94_09070 PF01709 Transcriptional regulator AFL94_09075 PF01174 SNO glutamine amidotransferase family AFL94_09080 PF09587 Bacterial capsule synthesis protein PGA_cap AFL94_09085 PF01432 Peptidase family M3 AFL94_09095 PF01872 RibD C-terminal domain AFL94_09100 PF13230 Glutamine amidotransferases class-II AFL94_09105 PF01680 SOR/SNZ family AFL94_09110 PF03009 Glycerophosphoryl diester phosphodiesterase family AFL94_09115 PF13416 Bacterial extracellular solute-binding protein AFL94_09120 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_09125 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_09130 PF00455 AFL94_09130 AFL94_09130 PF08220 DeoR-like helix-turn-helix domain AFL94_09135 PF13419 Haloacid dehalogenase-like hydrolase AFL94_09145 PF00005 ABC transporter AFL94_09150 PF00440 Bacterial regulatory proteins, tetR family AFL94_09155 PF00665 Integrase core domain AFL94_09160 PF13500 AAA domain AFL94_09170 PF00155 Aminotransferase class I and II AFL94_09175 PF00202 Aminotransferase class-III AFL94_09180 PF04055 Radical SAM superfamily AFL94_09180 PF06968 Biotin and Thiamin Synthesis associated domain AFL94_09185 PF01230 HIT domain AFL94_09190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_09190 PF03129 Anticodon binding domain AFL94_09190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_09200 PF07690 Major Facilitator Superfamily AFL94_09210 PF13302 Acetyltransferase (GNAT) domain AFL94_09215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_09220 PF04229 GrpB protein AFL94_09225 PF02811 PHP domain AFL94_09225 PF07733 Bacterial DNA polymerase III alpha subunit AFL94_09225 PF14579 Helix-hairpin-helix motif AFL94_09235 PF13577 SnoaL-like domain AFL94_09240 PF00106 short chain dehydrogenase AFL94_09245 PF00083 Sugar (and other) transporter AFL94_09250 PF00248 Aldo/keto reductase family AFL94_09255 PF00107 Zinc-binding dehydrogenase AFL94_09255 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_09260 PF00753 Metallo-beta-lactamase superfamily AFL94_09270 PF02586 Uncharacterised ACR, COG2135 AFL94_09275 PF00462 Glutaredoxin AFL94_09285 PF00485 Phosphoribulokinase / Uridine kinase family AFL94_09290 PF13622 Thioesterase-like superfamily AFL94_09295 PF01381 Helix-turn-helix AFL94_09295 PF07883 Cupin domain AFL94_09300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_09305 PF00313 'Cold-shock' DNA-binding domain AFL94_09310 PF00083 Sugar (and other) transporter AFL94_09310 PF07690 Major Facilitator Superfamily AFL94_09315 PF00440 Bacterial regulatory proteins, tetR family AFL94_09315 PF16859 AFL94_09315 AFL94_09320 PF00391 PEP-utilising enzyme, mobile domain AFL94_09320 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFL94_09325 PF00268 Ribonucleotide reductase, small chain AFL94_09330 PF00317 Ribonucleotide reductase, all-alpha domain AFL94_09330 PF02867 Ribonucleotide reductase, barrel domain AFL94_09330 PF08343 Ribonucleotide reductase N-terminal AFL94_09335 PF07972 NrdI Flavodoxin like AFL94_09340 PF00462 Glutaredoxin AFL94_09345 PF01168 Alanine racemase, N-terminal domain AFL94_09350 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_09350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_09350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_09355 PF01168 Alanine racemase, N-terminal domain AFL94_09360 PF07883 Cupin domain AFL94_09365 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_09380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_09380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_09410 PF00005 ABC transporter AFL94_09415 PF02293 AmiS/UreI family transporter AFL94_09420 PF00890 FAD binding domain AFL94_09420 PF02910 Fumarate reductase flavoprotein C-term AFL94_09425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_09425 PF03466 LysR substrate binding domain AFL94_09435 PF06983 3-demethylubiquinone-9 3-methyltransferase AFL94_09440 PF00106 short chain dehydrogenase AFL94_09445 PF01037 AsnC family AFL94_09445 PF13404 AsnC-type helix-turn-helix domain AFL94_09450 PF00155 Aminotransferase class I and II AFL94_09455 PF00324 Amino acid permease AFL94_09465 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFL94_09475 PF01544 CorA-like Mg2+ transporter protein AFL94_09480 PF06445 GyrI-like small molecule binding domain AFL94_09485 PF08713 DNA alkylation repair enzyme AFL94_09500 PF12680 SnoaL-like domain AFL94_09505 PF04993 TfoX N-terminal domain AFL94_09520 PF02410 Oligomerisation domain AFL94_09530 PF01467 Cytidylyltransferase AFL94_09540 PF00171 Aldehyde dehydrogenase family AFL94_09545 PF00696 Amino acid kinase family AFL94_09545 PF01472 PUA domain AFL94_09550 PF01018 GTP1/OBG AFL94_09550 PF01926 50S ribosome-binding GTPase AFL94_09550 PF09269 Domain of unknown function (DUF1967) AFL94_09555 PF01016 Ribosomal L27 protein AFL94_09560 PF00829 Ribosomal prokaryotic L21 protein AFL94_09565 PF10150 Ribonuclease E/G family AFL94_09570 PF07884 Vitamin K epoxide reductase family AFL94_09575 PF10990 AFL94_09575 AFL94_09580 PF13302 Acetyltransferase (GNAT) domain AFL94_09590 PF13302 Acetyltransferase (GNAT) domain AFL94_09595 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFL94_09600 PF00334 Nucleoside diphosphate kinase AFL94_09605 PF14017 AFL94_09605 AFL94_09610 PF02875 Mur ligase family, glutamate ligase domain AFL94_09610 PF08245 Mur ligase middle domain AFL94_09615 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_09615 PF08264 Anticodon-binding domain of tRNA AFL94_09620 PF13245 Part of AAA domain AFL94_09630 PF07730 Histidine kinase AFL94_09635 PF00072 Response regulator receiver domain AFL94_09635 PF00196 Bacterial regulatory proteins, luxR family AFL94_09640 PF03176 MMPL family AFL94_09645 PF11070 AFL94_09645 AFL94_09650 PF01047 MarR family AFL94_09655 PF02566 OsmC-like protein AFL94_09670 PF00533 BRCA1 C Terminus (BRCT) domain AFL94_09675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_09685 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_09690 PF00005 ABC transporter AFL94_09695 PF13379 NMT1-like family AFL94_09700 PF00009 Elongation factor Tu GTP binding domain AFL94_09705 PF01507 Phosphoadenosine phosphosulfate reductase family AFL94_09710 PF01507 Phosphoadenosine phosphosulfate reductase family AFL94_09715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFL94_09715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFL94_09720 PF01903 CbiX AFL94_09725 PF00106 short chain dehydrogenase AFL94_09735 PF04191 Phospholipid methyltransferase AFL94_09740 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_09740 PF08264 Anticodon-binding domain of tRNA AFL94_09750 PF01323 DSBA-like thioredoxin domain AFL94_09755 PF06689 ClpX C4-type zinc finger AFL94_09755 PF07724 AAA domain (Cdc48 subfamily) AFL94_09755 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_09760 PF00574 Clp protease AFL94_09765 PF00574 Clp protease AFL94_09770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_09770 PF05697 Bacterial trigger factor protein (TF) AFL94_09770 PF05698 Bacterial trigger factor protein (TF) C-terminus AFL94_09790 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_09795 PF02502 Ribose/Galactose Isomerase AFL94_09800 PF01433 Peptidase family M1 AFL94_09800 PF11838 ERAP1-like C-terminal domain AFL94_09805 PF02566 OsmC-like protein AFL94_09810 PF01152 Bacterial-like globin AFL94_09820 PF13622 Thioesterase-like superfamily AFL94_09825 PF00376 MerR family regulatory protein AFL94_09825 PF09278 MerR, DNA binding AFL94_09830 PF01613 Flavin reductase like domain AFL94_09835 PF00005 ABC transporter AFL94_09835 PF12848 ABC transporter AFL94_09845 PF02517 CAAX protease self-immunity AFL94_09855 PF00890 FAD binding domain AFL94_09865 PF01037 AsnC family AFL94_09865 PF13412 Winged helix-turn-helix DNA-binding AFL94_09870 PF01810 AFL94_09870 AFL94_09875 PF00005 ABC transporter AFL94_09880 PF02361 Cobalt transport protein AFL94_09885 PF02632 BioY family AFL94_09890 PF00501 AMP-binding enzyme AFL94_09895 PF00108 Thiolase, N-terminal domain AFL94_09895 PF02803 Thiolase, C-terminal domain AFL94_09900 PF01883 Domain of unknown function DUF59 AFL94_09905 PF01883 Domain of unknown function DUF59 AFL94_09910 PF00005 ABC transporter AFL94_09915 PF01458 Uncharacterized protein family (UPF0051) AFL94_09920 PF01458 Uncharacterized protein family (UPF0051) AFL94_09925 PF12802 MarR family AFL94_09930 PF00005 ABC transporter AFL94_09935 PF01061 AFL94_09935 AFL94_09940 PF02628 AFL94_09940 AFL94_09950 PF03551 Transcriptional regulator PadR-like family AFL94_09955 PF01040 UbiA prenyltransferase family AFL94_09960 PF00456 Transketolase, thiamine diphosphate binding domain AFL94_09960 PF02779 Transketolase, pyrimidine binding domain AFL94_09960 PF02780 Transketolase, C-terminal domain AFL94_09965 PF00923 Transaldolase AFL94_09970 PF00342 Phosphoglucose isomerase AFL94_09975 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFL94_09975 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFL94_09980 PF10128 AFL94_09980 AFL94_09985 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFL94_09990 PF01266 FAD dependent oxidoreductase AFL94_09995 PF13630 AFL94_09995 AFL94_10005 PF03840 Preprotein translocase SecG subunit AFL94_10010 PF00121 Triosephosphate isomerase AFL94_10015 PF00162 Phosphoglycerate kinase AFL94_10020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFL94_10020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFL94_10025 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFL94_10025 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFL94_10030 PF02650 WhiA C-terminal HTH domain AFL94_10030 PF10298 WhiA N-terminal LAGLIDADG-like domain AFL94_10030 PF14527 WhiA LAGLIDADG-like domain AFL94_10035 PF01933 Uncharacterised protein family UPF0052 AFL94_10040 PF03668 AFL94_10040 AFL94_10045 PF01541 GIY-YIG catalytic domain AFL94_10045 PF02151 UvrB/uvrC motif AFL94_10045 PF08459 UvrC Helix-hairpin-helix N-terminal AFL94_10045 PF14520 Helix-hairpin-helix domain AFL94_10050 PF01553 Acyltransferase AFL94_10055 PF13419 Haloacid dehalogenase-like hydrolase AFL94_10060 PF00005 ABC transporter AFL94_10070 PF13360 PQQ-like domain AFL94_10075 PF00392 Bacterial regulatory proteins, gntR family AFL94_10080 PF00753 Metallo-beta-lactamase superfamily AFL94_10085 PF00583 Acetyltransferase (GNAT) family AFL94_10090 PF13649 Methyltransferase domain AFL94_10095 PF00270 DEAD/DEAH box helicase AFL94_10095 PF00271 Helicase conserved C-terminal domain AFL94_10095 PF12029 AFL94_10095 AFL94_10115 PF01400 Astacin (Peptidase family M12A) AFL94_10120 PF10042 AFL94_10120 AFL94_10135 PF04307 AFL94_10135 AFL94_10140 PF00583 Acetyltransferase (GNAT) family AFL94_10145 PF00561 alpha/beta hydrolase fold AFL94_10150 PF01047 MarR family AFL94_10155 PF03741 AFL94_10155 AFL94_10160 PF00271 Helicase conserved C-terminal domain AFL94_10160 PF02151 UvrB/uvrC motif AFL94_10160 PF04851 Type III restriction enzyme, res subunit AFL94_10160 PF12344 Ultra-violet resistance protein B AFL94_10185 PF01121 Dephospho-CoA kinase AFL94_10190 PF03704 Bacterial transcriptional activator domain AFL94_10195 PF01205 Uncharacterized protein family UPF0029 AFL94_10200 PF05175 Methyltransferase small domain AFL94_10210 PF02585 GlcNAc-PI de-N-acetylase AFL94_10220 PF00575 S1 RNA binding domain AFL94_10225 PF01522 Polysaccharide deacetylase AFL94_10235 PF00476 DNA polymerase family A AFL94_10235 PF01367 5'-3' exonuclease, C-terminal SAM fold AFL94_10235 PF01612 3'-5' exonuclease AFL94_10235 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFL94_10240 PF03061 Thioesterase superfamily AFL94_10245 PF01872 RibD C-terminal domain AFL94_10255 PF01384 AFL94_10255 AFL94_10260 PF00072 Response regulator receiver domain AFL94_10260 PF03861 ANTAR domain AFL94_10270 PF00224 Pyruvate kinase, barrel domain AFL94_10270 PF02887 Pyruvate kinase, alpha/beta domain AFL94_10275 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_10275 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFL94_10280 PF00310 Glutamine amidotransferases class-II AFL94_10280 PF01493 GXGXG motif AFL94_10280 PF01645 Conserved region in glutamate synthase AFL94_10280 PF04898 Glutamate synthase central domain AFL94_10285 PF01790 AFL94_10285 AFL94_10290 PF00290 Tryptophan synthase alpha chain AFL94_10295 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_10300 PF00218 Indole-3-glycerol phosphate synthase AFL94_10310 PF09534 AFL94_10310 AFL94_10315 PF00425 chorismate binding enzyme AFL94_10315 PF04715 Anthranilate synthase component I, N terminal region AFL94_10320 PF01502 Phosphoribosyl-AMP cyclohydrolase AFL94_10330 PF00977 Histidine biosynthesis protein AFL94_10335 PF01634 ATP phosphoribosyltransferase AFL94_10335 PF08029 HisG, C-terminal domain AFL94_10340 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFL94_10345 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFL94_10350 PF00925 GTP cyclohydrolase II AFL94_10350 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFL94_10355 PF00677 Lumazine binding domain AFL94_10360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_10360 PF01872 RibD C-terminal domain AFL94_10365 PF04973 AFL94_10365 AFL94_10370 PF00834 Ribulose-phosphate 3 epimerase family AFL94_10375 PF01029 NusB family AFL94_10375 PF01189 NOL1/NOP2/sun family AFL94_10380 PF00551 Formyl transferase AFL94_10380 PF02911 Formyl transferase, C-terminal domain AFL94_10385 PF01327 Polypeptide deformylase AFL94_10435 PF14013 AFL94_10435 AFL94_10440 PF03594 AFL94_10440 AFL94_10445 PF03969 AFG1-like ATPase AFL94_10450 PF00581 Rhodanese-like domain AFL94_10455 PF02657 Fe-S metabolism associated domain AFL94_10460 PF04073 Aminoacyl-tRNA editing domain AFL94_10465 PF00561 alpha/beta hydrolase fold AFL94_10470 PF01641 SelR domain AFL94_10480 PF00106 short chain dehydrogenase AFL94_10485 PF01212 Beta-eliminating lyase AFL94_10490 PF11452 AFL94_10490 AFL94_10495 PF00570 HRDC domain AFL94_10495 PF01612 3'-5' exonuclease AFL94_10500 PF00108 Thiolase, N-terminal domain AFL94_10500 PF02803 Thiolase, C-terminal domain AFL94_10505 PF00378 Enoyl-CoA hydratase/isomerase family AFL94_10505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_10505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_10510 PF01872 RibD C-terminal domain AFL94_10515 PF00355 Rieske [2Fe-2S] domain AFL94_10520 PF00248 Aldo/keto reductase family AFL94_10525 PF00764 Arginosuccinate synthase AFL94_10550 PF04167 Protein of unknown function (DUF402) AFL94_10555 PF02779 Transketolase, pyrimidine binding domain AFL94_10555 PF02780 Transketolase, C-terminal domain AFL94_10555 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFL94_10560 PF05199 GMC oxidoreductase AFL94_10560 PF13450 NAD(P)-binding Rossmann-like domain AFL94_10570 PF00561 alpha/beta hydrolase fold AFL94_10575 PF06314 Acetoacetate decarboxylase (ADC) AFL94_10590 PF01734 Patatin-like phospholipase AFL94_10595 PF01636 Phosphotransferase enzyme family AFL94_10600 PF00330 Aconitase family (aconitate hydratase) AFL94_10600 PF00694 Aconitase C-terminal domain AFL94_10605 PF05958 tRNA (Uracil-5-)-methyltransferase AFL94_10610 PF13520 Amino acid permease AFL94_10615 PF02254 TrkA-N domain AFL94_10620 PF02080 TrkA-C domain AFL94_10620 PF02254 TrkA-N domain AFL94_10625 PF11361 AFL94_10625 AFL94_10635 PF12502 AFL94_10635 AFL94_10640 PF00692 dUTPase AFL94_10645 PF11292 AFL94_10645 AFL94_10650 PF13834 AFL94_10650 AFL94_10660 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AFL94_10670 PF13380 CoA binding domain AFL94_10670 PF13420 Acetyltransferase (GNAT) domain AFL94_10670 PF13549 ATP-grasp domain AFL94_10670 PF13607 Succinyl-CoA ligase like flavodoxin domain AFL94_10675 PF00521 DNA gyrase/topoisomerase IV, subunit A AFL94_10675 PF03989 DNA gyrase C-terminal domain, beta-propeller AFL94_10680 PF00005 ABC transporter AFL94_10680 PF00664 ABC transporter transmembrane region AFL94_10685 PF02322 AFL94_10685 AFL94_10690 PF01654 AFL94_10690 AFL94_10695 PF03965 Penicillinase repressor AFL94_10700 PF01435 Peptidase family M48 AFL94_10705 PF00204 DNA gyrase B AFL94_10705 PF00986 DNA gyrase B subunit, carboxyl terminus AFL94_10705 PF01751 Toprim domain AFL94_10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_10715 PF00140 Sigma-70 factor, region 1 AFL94_10715 PF04539 Sigma-70 region 3 AFL94_10715 PF04542 Sigma-70 region 2 AFL94_10715 PF04545 Sigma-70, region 4 AFL94_10720 PF13830 AFL94_10720 AFL94_10725 PF07690 Major Facilitator Superfamily AFL94_10730 PF09754 PAC2 family AFL94_10735 PF00883 Cytosol aminopeptidase family, catalytic domain AFL94_10735 PF02789 Cytosol aminopeptidase family, N-terminal domain AFL94_10740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_10740 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_10745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_10745 PF00364 Biotin-requiring enzyme AFL94_10745 PF02817 e3 binding domain AFL94_10755 PF00069 Protein kinase domain AFL94_10760 PF03099 Biotin/lipoate A/B protein ligase family AFL94_10765 PF04055 Radical SAM superfamily AFL94_10765 PF16881 AFL94_10765 AFL94_10770 PF13829 AFL94_10770 AFL94_10775 PF06271 AFL94_10775 AFL94_10780 PF00120 Glutamine synthetase, catalytic domain AFL94_10780 PF03951 Glutamine synthetase, beta-Grasp domain AFL94_10790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_10795 PF09348 AFL94_10795 AFL94_10800 PF03710 Glutamate-ammonia ligase adenylyltransferase AFL94_10800 PF08335 GlnD PII-uridylyltransferase AFL94_10805 PF00120 Glutamine synthetase, catalytic domain AFL94_10805 PF03951 Glutamine synthetase, beta-Grasp domain AFL94_10810 PF02548 Ketopantoate hydroxymethyltransferase AFL94_10820 PF00557 Metallopeptidase family M24 AFL94_10825 PF03477 ATP cone domain AFL94_10830 PF00815 Histidinol dehydrogenase AFL94_10835 PF01336 OB-fold nucleic acid binding domain AFL94_10835 PF02811 PHP domain AFL94_10835 PF07733 Bacterial DNA polymerase III alpha subunit AFL94_10835 PF14579 Helix-hairpin-helix motif AFL94_10840 PF00849 RNA pseudouridylate synthase AFL94_10840 PF01479 S4 domain AFL94_10845 PF01252 AFL94_10845 AFL94_10850 PF05103 DivIVA protein AFL94_10855 PF02325 AFL94_10855 AFL94_10860 PF04472 Protein of unknown function (DUF552) AFL94_10865 PF02578 Multi-copper polyphenol oxidoreductase laccase AFL94_10870 PF00091 Tubulin/FtsZ family, GTPase domain AFL94_10870 PF12327 FtsZ family, C-terminal domain AFL94_10875 PF08478 POTRA domain, FtsQ-type AFL94_10880 PF01225 Mur ligase family, catalytic domain AFL94_10880 PF02875 Mur ligase family, glutamate ligase domain AFL94_10880 PF08245 Mur ligase middle domain AFL94_10885 PF03033 Glycosyltransferase family 28 N-terminal domain AFL94_10885 PF04101 Glycosyltransferase family 28 C-terminal domain AFL94_10890 PF01098 AFL94_10890 AFL94_10895 PF02875 Mur ligase family, glutamate ligase domain AFL94_10895 PF08245 Mur ligase middle domain AFL94_10900 PF00953 Glycosyl transferase family 4 AFL94_10900 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFL94_10905 PF01225 Mur ligase family, catalytic domain AFL94_10905 PF02875 Mur ligase family, glutamate ligase domain AFL94_10905 PF08245 Mur ligase middle domain AFL94_10910 PF01225 Mur ligase family, catalytic domain AFL94_10910 PF02875 Mur ligase family, glutamate ligase domain AFL94_10910 PF08245 Mur ligase middle domain AFL94_10915 PF00905 Penicillin binding protein transpeptidase domain AFL94_10915 PF03717 Penicillin-binding Protein dimerisation domain AFL94_10925 PF01795 MraW methylase family AFL94_10930 PF02381 MraZ protein AFL94_10935 PF11239 AFL94_10935 AFL94_10940 PF00817 impB/mucB/samB family AFL94_10940 PF11798 IMS family HHH motif AFL94_10940 PF11799 impB/mucB/samB family C-terminal domain AFL94_10945 PF00348 Polyprenyl synthetase AFL94_10960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_10960 PF07568 AFL94_10960 AFL94_10960 PF08448 PAS fold AFL94_10960 PF12282 Signal transduction histidine kinase AFL94_10965 PF05088 AFL94_10965 AFL94_10970 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFL94_10985 PF01476 LysM domain AFL94_10995 PF01043 SecA preprotein cross-linking domain AFL94_10995 PF07516 SecA Wing and Scaffold domain AFL94_10995 PF07517 SecA DEAD-like domain AFL94_11000 PF06224 AFL94_11000 AFL94_11005 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFL94_11005 PF16321 AFL94_11005 AFL94_11010 PF00156 Phosphoribosyl transferase domain AFL94_11015 PF10646 AFL94_11015 AFL94_11015 PF10647 AFL94_11015 AFL94_11020 PF00512 His Kinase A (phospho-acceptor) domain AFL94_11020 PF00672 HAMP domain AFL94_11020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_11025 PF00072 Response regulator receiver domain AFL94_11025 PF00486 Transcriptional regulatory protein, C terminal AFL94_11035 PF01817 Chorismate mutase type II AFL94_11040 PF00005 ABC transporter AFL94_11040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_11045 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11050 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_11070 PF04326 Divergent AAA domain AFL94_11070 PF13749 ATP-dependent DNA helicase recG C-terminal AFL94_11075 PF00296 Luciferase-like monooxygenase AFL94_11085 PF07732 Multicopper oxidase AFL94_11085 PF13473 Cupredoxin-like domain AFL94_11100 PF10006 AFL94_11100 AFL94_11105 PF03054 tRNA methyl transferase AFL94_11110 PF00266 Aminotransferase class-V AFL94_11120 PF00809 Pterin binding enzyme AFL94_11130 PF00781 Diacylglycerol kinase catalytic domain AFL94_11135 PF00226 DnaJ domain AFL94_11140 PF00588 SpoU rRNA Methylase family AFL94_11150 PF02585 GlcNAc-PI de-N-acetylase AFL94_11155 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_11155 PF01012 Electron transfer flavoprotein domain AFL94_11160 PF01012 Electron transfer flavoprotein domain AFL94_11165 PF13180 PDZ domain AFL94_11165 PF13365 Trypsin-like peptidase domain AFL94_11170 PF04536 TLP18 AFL94_11175 PF04012 AFL94_11175 AFL94_11195 PF03699 AFL94_11195 AFL94_11200 PF05362 Lon protease (S16) C-terminal proteolytic domain AFL94_11205 PF10103 Uncharacterised conserved protein (DUF2342) AFL94_11210 PF01863 Protein of unknown function DUF45 AFL94_11215 PF00570 HRDC domain AFL94_11215 PF13245 Part of AAA domain AFL94_11215 PF13361 UvrD-like helicase C-terminal domain AFL94_11220 PF00293 NUDIX domain AFL94_11220 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AFL94_11220 PF09297 NADH pyrophosphatase zinc ribbon domain AFL94_11225 PF01636 Phosphotransferase enzyme family AFL94_11230 PF00580 UvrD/REP helicase N-terminal domain AFL94_11230 PF12705 PD-(D/E)XK nuclease superfamily AFL94_11230 PF13361 UvrD-like helicase C-terminal domain AFL94_11235 PF00580 UvrD/REP helicase N-terminal domain AFL94_11235 PF12705 PD-(D/E)XK nuclease superfamily AFL94_11235 PF13361 UvrD-like helicase C-terminal domain AFL94_11240 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFL94_11245 PF00929 Exonuclease AFL94_11250 PF00005 ABC transporter AFL94_11250 PF09383 NIL domain AFL94_11255 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11260 PF03180 NLPA lipoprotein AFL94_11265 PF13520 Amino acid permease AFL94_11270 PF00202 Aminotransferase class-III AFL94_11275 PF00490 Delta-aminolevulinic acid dehydratase AFL94_11280 PF02602 Uroporphyrinogen-III synthase HemD AFL94_11285 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFL94_11285 PF03900 Porphobilinogen deaminase, C-terminal domain AFL94_11290 PF00762 Ferrochelatase AFL94_11295 PF06778 Chlorite dismutase AFL94_11300 PF01593 Flavin containing amine oxidoreductase AFL94_11305 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFL94_11310 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFL94_11310 PF01488 Shikimate / quinate 5-dehydrogenase AFL94_11310 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFL94_11315 PF00440 Bacterial regulatory proteins, tetR family AFL94_11320 PF11305 AFL94_11320 AFL94_11325 PF00773 RNB domain AFL94_11330 PF00270 DEAD/DEAH box helicase AFL94_11330 PF00271 Helicase conserved C-terminal domain AFL94_11335 PF01555 DNA methylase AFL94_11340 PF02811 PHP domain AFL94_11345 PF00557 Metallopeptidase family M24 AFL94_11345 PF05195 Aminopeptidase P, N-terminal domain AFL94_11355 PF00571 CBS domain AFL94_11355 PF03448 MgtE intracellular N domain AFL94_11360 PF06210 AFL94_11360 AFL94_11365 PF01883 Domain of unknown function DUF59 AFL94_11365 PF10609 ParA/MinD ATPase like AFL94_11370 PF02416 mttA/Hcf106 family AFL94_11375 PF04542 Sigma-70 region 2 AFL94_11375 PF08281 Sigma-70, region 4 AFL94_11380 PF01596 O-methyltransferase AFL94_11390 PF03641 Possible lysine decarboxylase AFL94_11395 PF00005 ABC transporter AFL94_11400 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_11405 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11410 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_11415 PF01546 Peptidase family M20/M25/M40 AFL94_11415 PF07687 Peptidase dimerisation domain AFL94_11420 PF14602 Hexapeptide repeat of succinyl-transferase AFL94_11420 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AFL94_11430 PF00285 Citrate synthase AFL94_11435 PF00155 Aminotransferase class I and II AFL94_11440 PF00037 4Fe-4S binding domain AFL94_11450 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFL94_11455 PF12840 Helix-turn-helix domain AFL94_11465 PF00009 Elongation factor Tu GTP binding domain AFL94_11465 PF00679 Elongation factor G C-terminus AFL94_11465 PF03144 Elongation factor Tu domain 2 AFL94_11470 PF13302 Acetyltransferase (GNAT) domain AFL94_11475 PF00581 Rhodanese-like domain AFL94_11475 PF00899 ThiF family AFL94_11480 PF05690 Thiazole biosynthesis protein ThiG AFL94_11485 PF02597 ThiS family AFL94_11500 PF02566 OsmC-like protein AFL94_11505 PF13673 Acetyltransferase (GNAT) domain AFL94_11510 PF12697 Alpha/beta hydrolase family AFL94_11515 PF07947 AFL94_11515 AFL94_11525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_11525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_11525 PF13450 NAD(P)-binding Rossmann-like domain AFL94_11530 PF01223 DNA/RNA non-specific endonuclease AFL94_11535 PF12867 DinB superfamily AFL94_11540 PF03595 Voltage-dependent anion channel AFL94_11545 PF13673 Acetyltransferase (GNAT) domain AFL94_11550 PF13460 NADH(P)-binding AFL94_11555 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_11560 PF01758 Sodium Bile acid symporter family AFL94_11565 PF01022 Bacterial regulatory protein, arsR family AFL94_11570 PF00583 Acetyltransferase (GNAT) family AFL94_11590 PF14117 AFL94_11590 AFL94_11600 PF13302 Acetyltransferase (GNAT) domain AFL94_11605 PF13673 Acetyltransferase (GNAT) domain AFL94_11610 PF14249 AFL94_11610 AFL94_11620 PF08768 Domain of unknown function (DUF1794) AFL94_11630 PF00849 RNA pseudouridylate synthase AFL94_11630 PF01479 S4 domain AFL94_11640 PF03372 Endonuclease/Exonuclease/phosphatase family AFL94_11645 PF00535 Glycosyl transferase family 2 AFL94_11650 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_11655 PF11290 AFL94_11655 AFL94_11670 PF02834 LigT like Phosphoesterase AFL94_11675 PF00102 Protein-tyrosine phosphatase AFL94_11680 PF01926 50S ribosome-binding GTPase AFL94_11680 PF06071 Protein of unknown function (DUF933) AFL94_11685 PF02401 LytB protein AFL94_11690 PF02601 AFL94_11690 AFL94_11690 PF13742 AFL94_11690 AFL94_11695 PF02609 Exonuclease VII small subunit AFL94_11700 PF08877 MepB protein AFL94_11705 PF03976 Polyphosphate kinase 2 (PPK2) AFL94_11710 PF03235 AFL94_11710 AFL94_11715 PF00155 Aminotransferase class I and II AFL94_11720 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFL94_11725 PF00293 NUDIX domain AFL94_11730 PF01037 AsnC family AFL94_11730 PF13404 AsnC-type helix-turn-helix domain AFL94_11740 PF13302 Acetyltransferase (GNAT) domain AFL94_11745 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFL94_11750 PF08666 SAF domain AFL94_11750 PF16976 AFL94_11750 AFL94_11765 PF00117 Glutamine amidotransferase class-I AFL94_11765 PF00958 GMP synthase C terminal domain AFL94_11765 PF02540 NAD synthase AFL94_11770 PF12823 AFL94_11770 AFL94_11775 PF02104 AFL94_11775 AFL94_11780 PF00478 IMP dehydrogenase / GMP reductase domain AFL94_11785 PF14399 AFL94_11785 AFL94_11785 PF16169 AFL94_11785 AFL94_11790 PF02720 AFL94_11790 AFL94_11795 PF04892 AFL94_11795 AFL94_11805 PF00478 IMP dehydrogenase / GMP reductase domain AFL94_11805 PF00571 CBS domain AFL94_11810 PF01757 AFL94_11810 AFL94_11825 PF00118 TCP-1/cpn60 chaperonin family AFL94_11830 PF00166 Chaperonin 10 Kd subunit AFL94_11835 PF00324 Amino acid permease AFL94_11850 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFL94_11855 PF00814 Glycoprotease family AFL94_11860 PF00583 Acetyltransferase (GNAT) family AFL94_11865 PF00814 Glycoprotease family AFL94_11870 PF02367 Uncharacterised P-loop hydrolase UPF0079 AFL94_11875 PF00842 Alanine racemase, C-terminal domain AFL94_11875 PF01168 Alanine racemase, N-terminal domain AFL94_11880 PF01741 Large-conductance mechanosensitive channel, MscL AFL94_11885 PF00485 Phosphoribulokinase / Uridine kinase family AFL94_11890 PF01380 SIS domain AFL94_11890 PF13522 Glutamine amidotransferase domain AFL94_11895 PF01648 4'-phosphopantetheinyl transferase superfamily AFL94_11900 PF01256 Carbohydrate kinase AFL94_11900 PF03853 YjeF-related protein N-terminus AFL94_11905 PF13439 Glycosyltransferase Family 4 AFL94_11910 PF00535 Glycosyl transferase family 2 AFL94_11910 PF02709 N-terminal domain of galactosyltransferase AFL94_11920 PF13439 Glycosyltransferase Family 4 AFL94_11920 PF13692 Glycosyl transferases group 1 AFL94_11925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFL94_11925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFL94_11925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFL94_11930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_11930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_11930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_11930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_11935 PF00380 Ribosomal protein S9/S16 AFL94_11940 PF00572 Ribosomal protein L13 AFL94_11945 PF01416 tRNA pseudouridine synthase AFL94_11955 PF01196 Ribosomal protein L17 AFL94_11960 PF01000 RNA polymerase Rpb3/RpoA insert domain AFL94_11960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFL94_11960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFL94_11965 PF00411 Ribosomal protein S11 AFL94_11970 PF00416 Ribosomal protein S13/S18 AFL94_11975 PF01176 Translation initiation factor 1A / IF-1 AFL94_11980 PF00557 Metallopeptidase family M24 AFL94_11985 PF00406 Adenylate kinase AFL94_11990 PF00344 SecY translocase AFL94_11995 PF00828 Ribosomal protein L18e/L15 AFL94_12000 PF00327 Ribosomal protein L30p/L7e AFL94_12005 PF00333 Ribosomal protein S5, N-terminal domain AFL94_12005 PF03719 Ribosomal protein S5, C-terminal domain AFL94_12010 PF00861 Ribosomal L18p/L5e family AFL94_12015 PF00347 Ribosomal protein L6 AFL94_12020 PF00410 Ribosomal protein S8 AFL94_12025 PF00281 Ribosomal protein L5 AFL94_12025 PF00673 ribosomal L5P family C-terminus AFL94_12030 PF00467 KOW motif AFL94_12030 PF17136 AFL94_12030 AFL94_12035 PF00238 Ribosomal protein L14p/L23e AFL94_12040 PF03372 Endonuclease/Exonuclease/phosphatase family AFL94_12045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_12050 PF12833 Helix-turn-helix domain AFL94_12055 PF01042 Endoribonuclease L-PSP AFL94_12060 PF00366 Ribosomal protein S17 AFL94_12065 PF00831 Ribosomal L29 protein AFL94_12070 PF00252 Ribosomal protein L16p/L10e AFL94_12075 PF00189 Ribosomal protein S3, C-terminal domain AFL94_12075 PF07650 KH domain AFL94_12080 PF00237 Ribosomal protein L22p/L17e AFL94_12085 PF00203 Ribosomal protein S19 AFL94_12090 PF00181 Ribosomal Proteins L2, RNA binding domain AFL94_12090 PF03947 Ribosomal Proteins L2, C-terminal domain AFL94_12095 PF00276 Ribosomal protein L23 AFL94_12100 PF00573 Ribosomal protein L4/L1 family AFL94_12105 PF00297 Ribosomal protein L3 AFL94_12110 PF00338 Ribosomal protein S10p/S20e AFL94_12120 PF00009 Elongation factor Tu GTP binding domain AFL94_12120 PF03143 Elongation factor Tu C-terminal domain AFL94_12120 PF03144 Elongation factor Tu domain 2 AFL94_12125 PF00009 Elongation factor Tu GTP binding domain AFL94_12125 PF00679 Elongation factor G C-terminus AFL94_12125 PF03144 Elongation factor Tu domain 2 AFL94_12125 PF03764 Elongation factor G, domain IV AFL94_12125 PF14492 Elongation Factor G, domain II AFL94_12130 PF00177 Ribosomal protein S7p/S5e AFL94_12135 PF00164 Ribosomal protein S12/S23 AFL94_12140 PF13091 PLD-like domain AFL94_12145 PF00623 RNA polymerase Rpb1, domain 2 AFL94_12145 PF04983 RNA polymerase Rpb1, domain 3 AFL94_12145 PF04997 RNA polymerase Rpb1, domain 1 AFL94_12145 PF04998 RNA polymerase Rpb1, domain 5 AFL94_12145 PF05000 RNA polymerase Rpb1, domain 4 AFL94_12150 PF00562 RNA polymerase Rpb2, domain 6 AFL94_12150 PF04560 RNA polymerase Rpb2, domain 7 AFL94_12150 PF04561 RNA polymerase Rpb2, domain 2 AFL94_12150 PF04563 RNA polymerase beta subunit AFL94_12150 PF04565 RNA polymerase Rpb2, domain 3 AFL94_12150 PF10385 RNA polymerase beta subunit external 1 domain AFL94_12155 PF04073 Aminoacyl-tRNA editing domain AFL94_12160 PF01757 AFL94_12160 AFL94_12165 PF00542 Ribosomal protein L7/L12 C-terminal domain AFL94_12165 PF16320 AFL94_12165 AFL94_12170 PF00466 Ribosomal protein L10 AFL94_12175 PF00687 Ribosomal protein L1p/L10e family AFL94_12180 PF00298 Ribosomal protein L11, RNA binding domain AFL94_12180 PF03946 Ribosomal protein L11, N-terminal domain AFL94_12185 PF02357 Transcription termination factor nusG AFL94_12190 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFL94_12200 PF00155 Aminotransferase class I and II AFL94_12205 PF00072 Response regulator receiver domain AFL94_12205 PF00196 Bacterial regulatory proteins, luxR family AFL94_12210 PF04024 AFL94_12210 AFL94_12215 PF04024 AFL94_12215 AFL94_12225 PF04024 AFL94_12225 AFL94_12230 PF00365 Phosphofructokinase AFL94_12235 PF01571 Aminomethyltransferase folate-binding domain AFL94_12235 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFL94_12240 PF08768 Domain of unknown function (DUF1794) AFL94_12250 PF00486 Transcriptional regulatory protein, C terminal AFL94_12255 PF00583 Acetyltransferase (GNAT) family AFL94_12260 PF02503 Polyphosphate kinase middle domain AFL94_12260 PF13089 Polyphosphate kinase N-terminal domain AFL94_12260 PF13090 Polyphosphate kinase C-terminal domain AFL94_12265 PF00293 NUDIX domain AFL94_12265 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_12270 PF14542 GCN5-related N-acetyl-transferase AFL94_12275 PF00303 Thymidylate synthase AFL94_12280 PF00186 Dihydrofolate reductase AFL94_12290 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFL94_12290 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFL94_12295 PF01565 FAD binding domain AFL94_12295 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFL94_12300 PF07690 Major Facilitator Superfamily AFL94_12305 PF01575 MaoC like domain AFL94_12310 PF13452 N-terminal half of MaoC dehydratase AFL94_12320 PF13828 AFL94_12320 AFL94_12335 PF04607 Region found in RelA / SpoT proteins AFL94_12355 PF00270 DEAD/DEAH box helicase AFL94_12355 PF00271 Helicase conserved C-terminal domain AFL94_12355 PF03880 DbpA RNA binding domain AFL94_12365 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_12370 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_12380 PF00085 Thioredoxin AFL94_12390 PF04461 Protein of unknown function (DUF520) AFL94_12395 PF01435 Peptidase family M48 AFL94_12400 PF00892 EamA-like transporter family AFL94_12405 PF00202 Aminotransferase class-III AFL94_12410 PF00209 Sodium:neurotransmitter symporter family AFL94_12415 PF07905 AFL94_12415 AFL94_12415 PF13556 PucR C-terminal helix-turn-helix domain AFL94_12425 PF01230 HIT domain AFL94_12430 PF00348 Polyprenyl synthetase AFL94_12435 PF00425 chorismate binding enzyme AFL94_12440 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_12445 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_12450 PF00005 ABC transporter AFL94_12455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_12455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_12460 PF05787 Bacterial protein of unknown function (DUF839) AFL94_12465 PF13378 Enolase C-terminal domain-like AFL94_12475 PF11292 AFL94_12475 AFL94_12480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_12480 PF00364 Biotin-requiring enzyme AFL94_12480 PF02817 e3 binding domain AFL94_12485 PF02779 Transketolase, pyrimidine binding domain AFL94_12485 PF02780 Transketolase, C-terminal domain AFL94_12490 PF00676 Dehydrogenase E1 component AFL94_12495 PF01037 AsnC family AFL94_12495 PF13404 AsnC-type helix-turn-helix domain AFL94_12500 PF00378 Enoyl-CoA hydratase/isomerase family AFL94_12505 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_12505 PF00175 Oxidoreductase NAD-binding domain AFL94_12505 PF00970 Oxidoreductase FAD-binding domain AFL94_12510 PF01883 Domain of unknown function DUF59 AFL94_12515 PF05138 Phenylacetic acid catabolic protein AFL94_12520 PF06243 Phenylacetic acid degradation B AFL94_12525 PF05138 Phenylacetic acid catabolic protein AFL94_12530 PF07681 AFL94_12530 AFL94_12535 PF00005 ABC transporter AFL94_12540 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_12540 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_12545 PF00326 Prolyl oligopeptidase family AFL94_12545 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFL94_12550 PF04229 GrpB protein AFL94_12555 PF03061 Thioesterase superfamily AFL94_12560 PF00501 AMP-binding enzyme AFL94_12560 PF14535 AMP-binding enzyme C-terminal domain AFL94_12565 PF00440 Bacterial regulatory proteins, tetR family AFL94_12570 PF04973 AFL94_12570 AFL94_12575 PF00171 Aldehyde dehydrogenase family AFL94_12575 PF01575 MaoC like domain AFL94_12580 PF03061 Thioesterase superfamily AFL94_12595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_12600 PF13350 Tyrosine phosphatase family AFL94_12605 PF01163 RIO1 family AFL94_12610 PF01184 AFL94_12610 AFL94_12615 PF00196 Bacterial regulatory proteins, luxR family AFL94_12620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_12620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_12625 PF00378 Enoyl-CoA hydratase/isomerase family AFL94_12630 PF00108 Thiolase, N-terminal domain AFL94_12630 PF02803 Thiolase, C-terminal domain AFL94_12635 PF07690 Major Facilitator Superfamily AFL94_12640 PF00378 Enoyl-CoA hydratase/isomerase family AFL94_12645 PF00501 AMP-binding enzyme AFL94_12650 PF01040 UbiA prenyltransferase family AFL94_12655 PF14012 AFL94_12655 AFL94_12665 PF01578 AFL94_12665 AFL94_12670 PF05140 AFL94_12670 AFL94_12675 PF02683 AFL94_12675 AFL94_12680 PF00578 AhpC/TSA family AFL94_12685 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_12695 PF02629 CoA binding domain AFL94_12695 PF06971 Putative DNA-binding protein N-terminus AFL94_12700 PF05768 Glutaredoxin-like domain (DUF836) AFL94_12705 PF12710 haloacid dehalogenase-like hydrolase AFL94_12710 PF12728 Helix-turn-helix domain AFL94_12715 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFL94_12715 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFL94_12720 PF01022 Bacterial regulatory protein, arsR family AFL94_12725 PF00850 Histone deacetylase domain AFL94_12730 PF02386 Cation transport protein AFL94_12735 PF02254 TrkA-N domain AFL94_12740 PF01494 FAD binding domain AFL94_12745 PF03807 NADP oxidoreductase coenzyme F420-dependent AFL94_12745 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFL94_12750 PF01261 Xylose isomerase-like TIM barrel AFL94_12755 PF02541 Ppx/GppA phosphatase family AFL94_12760 PF01131 DNA topoisomerase AFL94_12760 PF01751 Toprim domain AFL94_12760 PF13368 AFL94_12760 AFL94_12765 PF12840 Helix-turn-helix domain AFL94_12770 PF05175 Methyltransferase small domain AFL94_12780 PF12368 AFL94_12780 AFL94_12785 PF13673 Acetyltransferase (GNAT) domain AFL94_12790 PF00270 DEAD/DEAH box helicase AFL94_12790 PF00271 Helicase conserved C-terminal domain AFL94_12790 PF09369 AFL94_12790 AFL94_12805 PF14029 AFL94_12805 AFL94_12810 PF00482 Type II secretion system (T2SS), protein F AFL94_12820 PF00437 Type II/IV secretion system protein AFL94_12830 PF00476 DNA polymerase family A AFL94_12835 PF00293 NUDIX domain AFL94_12840 PF00633 Helix-hairpin-helix motif AFL94_12840 PF00730 HhH-GPD superfamily base excision DNA repair protein AFL94_12840 PF10576 Iron-sulfur binding domain of endonuclease III AFL94_12845 PF00501 AMP-binding enzyme AFL94_12845 PF13193 AMP-binding enzyme C-terminal domain AFL94_12845 PF16177 AFL94_12845 AFL94_12855 PF01220 Dehydroquinase class II AFL94_12860 PF02674 AFL94_12860 AFL94_12860 PF13365 Trypsin-like peptidase domain AFL94_12865 PF00027 Cyclic nucleotide-binding domain AFL94_12865 PF13545 Crp-like helix-turn-helix domain AFL94_12875 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AFL94_12880 PF00905 Penicillin binding protein transpeptidase domain AFL94_12880 PF00912 Transglycosylase AFL94_12885 PF00149 Calcineurin-like phosphoesterase AFL94_12890 PF00005 ABC transporter AFL94_12890 PF00664 ABC transporter transmembrane region AFL94_12895 PF00005 ABC transporter AFL94_12895 PF00664 ABC transporter transmembrane region AFL94_12900 PF01259 SAICAR synthetase AFL94_12905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFL94_12905 PF02843 Phosphoribosylglycinamide synthetase, C domain AFL94_12905 PF02844 Phosphoribosylglycinamide synthetase, N domain AFL94_12925 PF00156 Phosphoribosyl transferase domain AFL94_12925 PF13522 Glutamine amidotransferase domain AFL94_12930 PF00586 AIR synthase related protein, N-terminal domain AFL94_12930 PF02769 AIR synthase related protein, C-terminal domain AFL94_12955 PF02146 Sir2 family AFL94_12960 PF13845 AFL94_12960 AFL94_12965 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_12965 PF02861 Clp amino terminal domain AFL94_12965 PF07724 AAA domain (Cdc48 subfamily) AFL94_12965 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_12970 PF04978 Protein of unknown function (DUF664) AFL94_12975 PF03741 AFL94_12975 AFL94_12980 PF03733 AFL94_12980 AFL94_12985 PF02390 Putative methyltransferase AFL94_12990 PF13302 Acetyltransferase (GNAT) domain AFL94_12995 PF13411 MerR HTH family regulatory protein AFL94_13000 PF00226 DnaJ domain AFL94_13000 PF01556 DnaJ C terminal domain AFL94_13005 PF01025 GrpE AFL94_13010 PF00012 Hsp70 protein AFL94_13015 PF13396 AFL94_13015 AFL94_13025 PF00270 DEAD/DEAH box helicase AFL94_13025 PF00271 Helicase conserved C-terminal domain AFL94_13030 PF03176 MMPL family AFL94_13035 PF01047 MarR family AFL94_13040 PF01810 AFL94_13040 AFL94_13045 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_13050 PF00425 chorismate binding enzyme AFL94_13050 PF04715 Anthranilate synthase component I, N terminal region AFL94_13055 PF00561 alpha/beta hydrolase fold AFL94_13055 PF08386 TAP-like protein AFL94_13060 PF13091 PLD-like domain AFL94_13060 PF13396 AFL94_13060 AFL94_13065 PF01063 Aminotransferase class IV AFL94_13070 PF00005 ABC transporter AFL94_13070 PF02361 Cobalt transport protein AFL94_13075 PF09819 AFL94_13075 AFL94_13080 PF14019 AFL94_13080 AFL94_13085 PF03334 AFL94_13085 AFL94_13090 PF04066 AFL94_13090 AFL94_13095 PF01899 AFL94_13095 AFL94_13100 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFL94_13105 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFL94_13110 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFL94_13110 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFL94_13110 PF04039 AFL94_13110 AFL94_13110 PF13244 AFL94_13110 AFL94_13115 PF11700 AFL94_13115 AFL94_13120 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) AFL94_13135 PF05681 AFL94_13135 AFL94_13135 PF05683 Fumarase C-terminus AFL94_13140 PF07179 AFL94_13140 AFL94_13150 PF03547 AFL94_13150 AFL94_13155 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_13160 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_13165 PF00005 ABC transporter AFL94_13170 PF05872 AFL94_13170 AFL94_13180 PF05977 Transmembrane secretion effector AFL94_13185 PF00578 AhpC/TSA family AFL94_13185 PF01436 NHL repeat AFL94_13195 PF05425 AFL94_13195 AFL94_13195 PF09678 AFL94_13195 AFL94_13200 PF04261 Dyp-type peroxidase family AFL94_13205 PF04314 Protein of unknown function (DUF461) AFL94_13220 PF00216 Bacterial DNA-binding protein AFL94_13225 PF00216 Bacterial DNA-binding protein AFL94_13230 PF00106 short chain dehydrogenase AFL94_13235 PF09350 AFL94_13235 AFL94_13240 PF00253 Ribosomal protein S14p/S29e AFL94_13245 PF00471 Ribosomal protein L33 AFL94_13250 PF00830 Ribosomal L28 family AFL94_13255 PF01047 MarR family AFL94_13260 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_13265 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_13270 PF00005 ABC transporter AFL94_13270 PF08402 TOBE domain AFL94_13275 PF13416 Bacterial extracellular solute-binding protein AFL94_13280 PF13416 Bacterial extracellular solute-binding protein AFL94_13285 PF01037 AsnC family AFL94_13285 PF13404 AsnC-type helix-turn-helix domain AFL94_13290 PF00202 Aminotransferase class-III AFL94_13295 PF06114 Domain of unknown function (DUF955) AFL94_13300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_13300 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_13300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_13305 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_13320 PF07905 AFL94_13320 AFL94_13320 PF13556 PucR C-terminal helix-turn-helix domain AFL94_13325 PF00171 Aldehyde dehydrogenase family AFL94_13330 PF00202 Aminotransferase class-III AFL94_13340 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_13345 PF09360 Iron-binding zinc finger CDGSH type AFL94_13350 PF14518 Iron-containing redox enzyme AFL94_13365 PF13450 NAD(P)-binding Rossmann-like domain AFL94_13375 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_13380 PF09954 AFL94_13380 AFL94_13390 PF00171 Aldehyde dehydrogenase family AFL94_13395 PF13520 Amino acid permease AFL94_13400 PF12833 Helix-turn-helix domain AFL94_13400 PF14525 AFL94_13400 AFL94_13405 PF00440 Bacterial regulatory proteins, tetR family AFL94_13405 PF13977 Bacterial transcriptional repressor AFL94_13410 PF01179 Copper amine oxidase, enzyme domain AFL94_13410 PF02728 Copper amine oxidase, N3 domain AFL94_13420 PF01266 FAD dependent oxidoreductase AFL94_13425 PF00171 Aldehyde dehydrogenase family AFL94_13435 PF01297 Periplasmic solute binding protein family AFL94_13440 PF07907 AFL94_13440 AFL94_13455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_13460 PF01769 Divalent cation transporter AFL94_13460 PF03448 MgtE intracellular N domain AFL94_13465 PF03313 AFL94_13465 AFL94_13465 PF03315 Serine dehydratase beta chain AFL94_13470 PF00464 Serine hydroxymethyltransferase AFL94_13475 PF01597 Glycine cleavage H-protein AFL94_13480 PF01571 Aminomethyltransferase folate-binding domain AFL94_13480 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFL94_13485 PF02347 Glycine cleavage system P-protein AFL94_13490 PF13472 GDSL-like Lipase/Acylhydrolase family AFL94_13495 PF00144 Beta-lactamase AFL94_13500 PF13520 Amino acid permease AFL94_13505 PF00075 RNase H AFL94_13515 PF13409 Glutathione S-transferase, N-terminal domain AFL94_13515 PF13410 Glutathione S-transferase, C-terminal domain AFL94_13520 PF03358 NADPH-dependent FMN reductase AFL94_13525 PF12802 MarR family AFL94_13530 PF00005 ABC transporter AFL94_13530 PF00664 ABC transporter transmembrane region AFL94_13535 PF01047 MarR family AFL94_13540 PF00005 ABC transporter AFL94_13540 PF04954 Siderophore-interacting protein AFL94_13540 PF08021 Siderophore-interacting FAD-binding domain AFL94_13545 PF01032 FecCD transport family AFL94_13550 PF01032 FecCD transport family AFL94_13555 PF00753 Metallo-beta-lactamase superfamily AFL94_13560 PF01497 Periplasmic binding protein AFL94_13570 PF00005 ABC transporter AFL94_13580 PF09588 YqaJ-like viral recombinase domain AFL94_13585 PF00924 Mechanosensitive ion channel AFL94_13595 PF02567 Phenazine biosynthesis-like protein AFL94_13600 PF07690 Major Facilitator Superfamily AFL94_13615 PF00440 Bacterial regulatory proteins, tetR family AFL94_13620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_13620 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_13620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_13625 PF00270 DEAD/DEAH box helicase AFL94_13625 PF00271 Helicase conserved C-terminal domain AFL94_13625 PF04408 Helicase associated domain (HA2) AFL94_13625 PF08482 AFL94_13625 AFL94_13630 PF00561 alpha/beta hydrolase fold AFL94_13635 PF00248 Aldo/keto reductase family AFL94_13640 PF00171 Aldehyde dehydrogenase family AFL94_13645 PF05090 AFL94_13645 AFL94_13660 PF00196 Bacterial regulatory proteins, luxR family AFL94_13665 PF06347 Bacterial SH3 domain AFL94_13665 PF08239 Bacterial SH3 domain AFL94_13670 PF00210 Ferritin-like domain AFL94_13675 PF00575 S1 RNA binding domain AFL94_13675 PF09371 Tex-like protein N-terminal domain AFL94_13675 PF12836 Helix-hairpin-helix motif AFL94_13675 PF16921 AFL94_13675 AFL94_13685 PF01479 S4 domain AFL94_13690 PF00326 Prolyl oligopeptidase family AFL94_13700 PF03458 AFL94_13700 AFL94_13705 PF07690 Major Facilitator Superfamily AFL94_13710 PF00440 Bacterial regulatory proteins, tetR family AFL94_13715 PF07690 Major Facilitator Superfamily AFL94_13720 PF00313 'Cold-shock' DNA-binding domain AFL94_13725 PF00296 Luciferase-like monooxygenase AFL94_13735 PF07690 Major Facilitator Superfamily AFL94_13740 PF01037 AsnC family AFL94_13740 PF13404 AsnC-type helix-turn-helix domain AFL94_13750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_13750 PF03466 LysR substrate binding domain AFL94_13755 PF16113 AFL94_13755 AFL94_13760 PF01645 Conserved region in glutamate synthase AFL94_13765 PF00005 ABC transporter AFL94_13765 PF00664 ABC transporter transmembrane region AFL94_13770 PF00005 ABC transporter AFL94_13770 PF00664 ABC transporter transmembrane region AFL94_13775 PF03061 Thioesterase superfamily AFL94_13780 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFL94_13785 PF13279 Thioesterase-like superfamily AFL94_13790 PF07730 Histidine kinase AFL94_13795 PF00072 Response regulator receiver domain AFL94_13795 PF00196 Bacterial regulatory proteins, luxR family AFL94_13800 PF00005 ABC transporter AFL94_13800 PF13732 AFL94_13800 AFL94_13805 PF12698 ABC-2 family transporter protein AFL94_13820 PF00753 Metallo-beta-lactamase superfamily AFL94_13830 PF13411 MerR HTH family regulatory protein AFL94_13835 PF00011 Hsp20/alpha crystallin family AFL94_13845 PF00171 Aldehyde dehydrogenase family AFL94_13845 PF01619 Proline dehydrogenase AFL94_13850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_13850 PF03466 LysR substrate binding domain AFL94_13855 PF00474 Sodium:solute symporter family AFL94_13860 PF01370 NAD dependent epimerase/dehydratase family AFL94_13870 PF01037 AsnC family AFL94_13870 PF13404 AsnC-type helix-turn-helix domain AFL94_13875 PF16481 AFL94_13875 AFL94_13885 PF01546 Peptidase family M20/M25/M40 AFL94_13885 PF07687 Peptidase dimerisation domain AFL94_13890 PF08282 haloacid dehalogenase-like hydrolase AFL94_13895 PF00480 ROK family AFL94_13900 PF00480 ROK family AFL94_13900 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFL94_13905 PF13350 Tyrosine phosphatase family AFL94_13910 PF00107 Zinc-binding dehydrogenase AFL94_13910 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_13915 PF05495 CHY zinc finger AFL94_13920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_13920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_13925 PF00582 Universal stress protein family AFL94_13930 PF03576 Peptidase family S58 AFL94_13935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_13935 PF14759 Reductase C-terminal AFL94_13940 PF13088 BNR repeat-like domain AFL94_13945 PF00082 Subtilase family AFL94_13955 PF00107 Zinc-binding dehydrogenase AFL94_13955 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_13960 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_13965 PF00743 Flavin-binding monooxygenase-like AFL94_13975 PF06983 3-demethylubiquinone-9 3-methyltransferase AFL94_13980 PF07690 Major Facilitator Superfamily AFL94_13990 PF13532 2OG-Fe(II) oxygenase superfamily AFL94_13995 PF00294 pfkB family carbohydrate kinase AFL94_14005 PF01614 Bacterial transcriptional regulator AFL94_14005 PF09339 IclR helix-turn-helix domain AFL94_14010 PF00210 Ferritin-like domain AFL94_14020 PF11259 AFL94_14020 AFL94_14025 PF00221 Aromatic amino acid lyase AFL94_14030 PF02261 Aspartate decarboxylase AFL94_14050 PF05025 RbsD / FucU transport protein family AFL94_14055 PF00294 pfkB family carbohydrate kinase AFL94_14060 PF13407 Periplasmic binding protein domain AFL94_14065 PF02653 AFL94_14065 AFL94_14070 PF00005 ABC transporter AFL94_14075 PF00356 Bacterial regulatory proteins, lacI family AFL94_14075 PF13377 Periplasmic binding protein-like domain AFL94_14080 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFL94_14080 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_14080 PF04023 FeoA domain AFL94_14085 PF13419 Haloacid dehalogenase-like hydrolase AFL94_14090 PF00392 Bacterial regulatory proteins, gntR family AFL94_14090 PF07702 UTRA domain AFL94_14095 PF01266 FAD dependent oxidoreductase AFL94_14100 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AFL94_14105 PF00005 ABC transporter AFL94_14110 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14115 PF00950 AFL94_14115 AFL94_14120 PF00005 ABC transporter AFL94_14125 PF01297 Periplasmic solute binding protein family AFL94_14130 PF06347 Bacterial SH3 domain AFL94_14130 PF08239 Bacterial SH3 domain AFL94_14135 PF01981 Peptidyl-tRNA hydrolase PTH2 AFL94_14150 PF07739 TipAS antibiotic-recognition domain AFL94_14150 PF13411 MerR HTH family regulatory protein AFL94_14155 PF12728 Helix-turn-helix domain AFL94_14160 PF01037 AsnC family AFL94_14160 PF13404 AsnC-type helix-turn-helix domain AFL94_14165 PF07690 Major Facilitator Superfamily AFL94_14170 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_14175 PF13520 Amino acid permease AFL94_14180 PF00582 Universal stress protein family AFL94_14185 PF01593 Flavin containing amine oxidoreductase AFL94_14190 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFL94_14210 PF02080 TrkA-C domain AFL94_14210 PF02254 TrkA-N domain AFL94_14215 PF02386 Cation transport protein AFL94_14225 PF01037 AsnC family AFL94_14225 PF13412 Winged helix-turn-helix DNA-binding AFL94_14230 PF09335 AFL94_14230 AFL94_14235 PF07690 Major Facilitator Superfamily AFL94_14240 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_14240 PF14759 Reductase C-terminal AFL94_14245 PF00355 Rieske [2Fe-2S] domain AFL94_14250 PF01869 BadF/BadG/BcrA/BcrD ATPase family AFL94_14255 PF12802 MarR family AFL94_14265 PF02566 OsmC-like protein AFL94_14280 PF00392 Bacterial regulatory proteins, gntR family AFL94_14280 PF07729 FCD domain AFL94_14285 PF02652 AFL94_14285 AFL94_14290 PF02754 AFL94_14290 AFL94_14295 PF02589 Uncharacterised ACR, YkgG family COG1556 AFL94_14295 PF13183 4Fe-4S dicluster domain AFL94_14300 PF02589 Uncharacterised ACR, YkgG family COG1556 AFL94_14305 PF07690 Major Facilitator Superfamily AFL94_14315 PF04264 YceI-like domain AFL94_14320 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFL94_14325 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14330 PF00005 ABC transporter AFL94_14335 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14340 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_14345 PF01235 AFL94_14345 AFL94_14350 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_14355 PF00324 Amino acid permease AFL94_14370 PF00390 Malic enzyme, N-terminal domain AFL94_14370 PF03949 Malic enzyme, NAD binding domain AFL94_14375 PF12728 Helix-turn-helix domain AFL94_14380 PF00155 Aminotransferase class I and II AFL94_14385 PF00775 Dioxygenase AFL94_14390 PF03061 Thioesterase superfamily AFL94_14395 PF01614 Bacterial transcriptional regulator AFL94_14395 PF09339 IclR helix-turn-helix domain AFL94_14400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_14400 PF01261 Xylose isomerase-like TIM barrel AFL94_14400 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AFL94_14405 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_14410 PF00083 Sugar (and other) transporter AFL94_14415 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_14420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_14420 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_14425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_14425 PF03466 LysR substrate binding domain AFL94_14430 PF00083 Sugar (and other) transporter AFL94_14430 PF07690 Major Facilitator Superfamily AFL94_14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_14435 PF03466 LysR substrate binding domain AFL94_14440 PF03601 AFL94_14440 AFL94_14450 PF00293 NUDIX domain AFL94_14455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_14455 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_14455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_14460 PF02656 AFL94_14460 AFL94_14465 PF02656 AFL94_14465 AFL94_14470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_14470 PF03466 LysR substrate binding domain AFL94_14475 PF00083 Sugar (and other) transporter AFL94_14475 PF07690 Major Facilitator Superfamily AFL94_14480 PF00753 Metallo-beta-lactamase superfamily AFL94_14480 PF12706 Beta-lactamase superfamily domain AFL94_14485 PF01638 HxlR-like helix-turn-helix AFL94_14490 PF13460 NADH(P)-binding AFL94_14495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_14500 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14505 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_14510 PF00005 ABC transporter AFL94_14510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_14525 PF00501 AMP-binding enzyme AFL94_14525 PF13193 AMP-binding enzyme C-terminal domain AFL94_14530 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AFL94_14535 PF01037 AsnC family AFL94_14535 PF13404 AsnC-type helix-turn-helix domain AFL94_14540 PF07690 Major Facilitator Superfamily AFL94_14545 PF01546 Peptidase family M20/M25/M40 AFL94_14560 PF05899 Protein of unknown function (DUF861) AFL94_14585 PF08378 AFL94_14585 AFL94_14590 PF01168 Alanine racemase, N-terminal domain AFL94_14590 PF14031 Putative serine dehydratase domain AFL94_14595 PF01614 Bacterial transcriptional regulator AFL94_14595 PF09339 IclR helix-turn-helix domain AFL94_14605 PF01144 Coenzyme A transferase AFL94_14610 PF01144 Coenzyme A transferase AFL94_14615 PF00108 Thiolase, N-terminal domain AFL94_14615 PF02803 Thiolase, C-terminal domain AFL94_14620 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_14625 PF00149 Calcineurin-like phosphoesterase AFL94_14630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFL94_14630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFL94_14635 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_14635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_14635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_14645 PF01965 DJ-1/PfpI family AFL94_14650 PF00392 Bacterial regulatory proteins, gntR family AFL94_14650 PF07729 FCD domain AFL94_14655 PF06089 AFL94_14655 AFL94_14660 PF00206 Lyase AFL94_14660 PF10415 Fumarase C C-terminus AFL94_14665 PF00324 Amino acid permease AFL94_14670 PF00326 Prolyl oligopeptidase family AFL94_14680 PF01565 FAD binding domain AFL94_14680 PF08031 Berberine and berberine like AFL94_14685 PF17173 AFL94_14685 AFL94_14695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_14695 PF00364 Biotin-requiring enzyme AFL94_14695 PF02817 e3 binding domain AFL94_14700 PF02779 Transketolase, pyrimidine binding domain AFL94_14700 PF02780 Transketolase, C-terminal domain AFL94_14705 PF00676 Dehydrogenase E1 component AFL94_14710 PF00155 Aminotransferase class I and II AFL94_14715 PF04020 AFL94_14715 AFL94_14730 PF00206 Lyase AFL94_14730 PF08328 Adenylosuccinate lyase C-terminal AFL94_14735 PF07690 Major Facilitator Superfamily AFL94_14740 PF00384 Molybdopterin oxidoreductase AFL94_14740 PF01568 Molydopterin dinucleotide binding domain AFL94_14740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFL94_14745 PF04324 BFD-like [2Fe-2S] binding domain AFL94_14745 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_14750 PF13806 Rieske-like [2Fe-2S] domain AFL94_14755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFL94_14755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFL94_14755 PF04324 BFD-like [2Fe-2S] binding domain AFL94_14755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_14760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFL94_14765 PF00486 Transcriptional regulatory protein, C terminal AFL94_14765 PF02602 Uroporphyrinogen-III synthase HemD AFL94_14770 PF00248 Aldo/keto reductase family AFL94_14775 PF00392 Bacterial regulatory proteins, gntR family AFL94_14775 PF07729 FCD domain AFL94_14780 PF01565 FAD binding domain AFL94_14780 PF02913 FAD linked oxidases, C-terminal domain AFL94_14785 PF02625 XdhC and CoxI family AFL94_14785 PF13478 XdhC Rossmann domain AFL94_14790 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFL94_14790 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFL94_14795 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_14795 PF00941 FAD binding domain in molybdopterin dehydrogenase AFL94_14795 PF01799 [2Fe-2S] binding domain AFL94_14795 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFL94_14800 PF00860 Permease family AFL94_14805 PF00384 Molybdopterin oxidoreductase AFL94_14805 PF01568 Molydopterin dinucleotide binding domain AFL94_14810 PF02634 FdhD/NarQ family AFL94_14820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_14825 PF00501 AMP-binding enzyme AFL94_14825 PF13193 AMP-binding enzyme C-terminal domain AFL94_14835 PF04306 AFL94_14835 AFL94_14840 PF00072 Response regulator receiver domain AFL94_14840 PF00196 Bacterial regulatory proteins, luxR family AFL94_14845 PF07730 Histidine kinase AFL94_14855 PF00005 ABC transporter AFL94_14860 PF09335 AFL94_14860 AFL94_14870 PF00196 Bacterial regulatory proteins, luxR family AFL94_14875 PF00557 Metallopeptidase family M24 AFL94_14875 PF05195 Aminopeptidase P, N-terminal domain AFL94_14880 PF01979 Amidohydrolase family AFL94_14885 PF00561 alpha/beta hydrolase fold AFL94_14900 PF00155 Aminotransferase class I and II AFL94_14905 PF02627 Carboxymuconolactone decarboxylase family AFL94_14920 PF04055 Radical SAM superfamily AFL94_14925 PF01494 FAD binding domain AFL94_14930 PF13649 Methyltransferase domain AFL94_14935 PF00195 Chalcone and stilbene synthases, N-terminal domain AFL94_14935 PF02797 Chalcone and stilbene synthases, C-terminal domain AFL94_14940 PF11625 Protein of unknown function (DUF3253) AFL94_14945 PF05532 CsbD-like AFL94_14955 PF01925 AFL94_14955 AFL94_14960 PF01266 FAD dependent oxidoreductase AFL94_14965 PF13520 Amino acid permease AFL94_14970 PF04371 Porphyromonas-type peptidyl-arginine deiminase AFL94_14975 PF00795 Carbon-nitrogen hydrolase AFL94_14980 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFL94_15015 PF04960 Glutaminase AFL94_15020 PF03061 Thioesterase superfamily AFL94_15030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_15035 PF13472 GDSL-like Lipase/Acylhydrolase family AFL94_15040 PF13563 2'-5' RNA ligase superfamily AFL94_15045 PF07730 Histidine kinase AFL94_15045 PF13796 AFL94_15045 AFL94_15050 PF00072 Response regulator receiver domain AFL94_15050 PF00196 Bacterial regulatory proteins, luxR family AFL94_15065 PF04012 AFL94_15065 AFL94_15070 PF05544 Proline racemase AFL94_15075 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFL94_15080 PF13476 AAA domain AFL94_15085 PF01494 FAD binding domain AFL94_15085 PF07976 Phenol hydroxylase, C-terminal dimerisation domain AFL94_15090 PF09339 IclR helix-turn-helix domain AFL94_15095 PF10979 AFL94_15095 AFL94_15100 PF05016 Plasmid stabilisation system protein AFL94_15110 PF07690 Major Facilitator Superfamily AFL94_15115 PF09424 Yqey-like protein AFL94_15120 PF14016 AFL94_15120 AFL94_15130 PF02388 FemAB family AFL94_15135 PF02583 Metal-sensitive transcriptional repressor AFL94_15140 PF00403 Heavy-metal-associated domain AFL94_15145 PF00122 E1-E2 ATPase AFL94_15145 PF00403 Heavy-metal-associated domain AFL94_15145 PF00702 haloacid dehalogenase-like hydrolase AFL94_15150 PF13515 AFL94_15150 AFL94_15155 PF01047 MarR family AFL94_15160 PF00324 Amino acid permease AFL94_15165 PF00732 GMC oxidoreductase AFL94_15165 PF05199 GMC oxidoreductase AFL94_15170 PF01872 RibD C-terminal domain AFL94_15175 PF13520 Amino acid permease AFL94_15180 PF01329 Pterin 4 alpha carbinolamine dehydratase AFL94_15185 PF00892 EamA-like transporter family AFL94_15190 PF07336 Protein of unknown function (DUF1470) AFL94_15190 PF11706 CGNR zinc finger AFL94_15200 PF03737 Demethylmenaquinone methyltransferase AFL94_15205 PF13520 Amino acid permease AFL94_15215 PF03729 AFL94_15215 AFL94_15220 PF01070 FMN-dependent dehydrogenase AFL94_15225 PF00083 Sugar (and other) transporter AFL94_15230 PF00392 Bacterial regulatory proteins, gntR family AFL94_15230 PF07729 FCD domain AFL94_15235 PF01554 MatE AFL94_15245 PF07690 Major Facilitator Superfamily AFL94_15250 PF02517 CAAX protease self-immunity AFL94_15255 PF07690 Major Facilitator Superfamily AFL94_15260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_15265 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_15270 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_15270 PF12911 AFL94_15270 AFL94_15275 PF00005 ABC transporter AFL94_15280 PF00230 Major intrinsic protein AFL94_15290 PF13515 AFL94_15290 AFL94_15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_15295 PF03466 LysR substrate binding domain AFL94_15300 PF01292 Prokaryotic cytochrome b561 AFL94_15305 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_15305 PF01012 Electron transfer flavoprotein domain AFL94_15310 PF01012 Electron transfer flavoprotein domain AFL94_15325 PF01575 MaoC like domain AFL94_15335 PF00501 AMP-binding enzyme AFL94_15345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_15350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_15350 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_15350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_15360 PF01575 MaoC like domain AFL94_15360 PF13452 N-terminal half of MaoC dehydratase AFL94_15370 PF07332 AFL94_15370 AFL94_15375 PF12277 AFL94_15375 AFL94_15385 PF00011 Hsp20/alpha crystallin family AFL94_15395 PF00171 Aldehyde dehydrogenase family AFL94_15400 PF01796 AFL94_15400 AFL94_15400 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) AFL94_15410 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_15415 PF00440 Bacterial regulatory proteins, tetR family AFL94_15420 PF13380 CoA binding domain AFL94_15420 PF13549 ATP-grasp domain AFL94_15420 PF13607 Succinyl-CoA ligase like flavodoxin domain AFL94_15425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_15425 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_15425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_15430 PF00005 ABC transporter AFL94_15430 PF00664 ABC transporter transmembrane region AFL94_15435 PF00005 ABC transporter AFL94_15435 PF00664 ABC transporter transmembrane region AFL94_15440 PF02683 AFL94_15440 AFL94_15445 PF13462 Thioredoxin AFL94_15450 PF03965 Penicillinase repressor AFL94_15455 PF01435 Peptidase family M48 AFL94_15460 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AFL94_15465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_15465 PF03466 LysR substrate binding domain AFL94_15470 PF00083 Sugar (and other) transporter AFL94_15475 PF01546 Peptidase family M20/M25/M40 AFL94_15480 PF01425 Amidase AFL94_15495 PF01329 Pterin 4 alpha carbinolamine dehydratase AFL94_15505 PF04239 Protein of unknown function (DUF421) AFL94_15510 PF13520 Amino acid permease AFL94_15520 PF00857 Isochorismatase family AFL94_15535 PF07498 Rho termination factor, N-terminal domain AFL94_15540 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_15550 PF00107 Zinc-binding dehydrogenase AFL94_15550 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_15550 PF13823 Alcohol dehydrogenase GroES-associated AFL94_15555 PF02735 Ku70/Ku80 beta-barrel domain AFL94_15560 PF01068 ATP dependent DNA ligase domain AFL94_15560 PF04679 ATP dependent DNA ligase C terminal region AFL94_15560 PF13298 DNA polymerase Ligase (LigD) AFL94_15565 PF14019 AFL94_15565 AFL94_15570 PF00171 Aldehyde dehydrogenase family AFL94_15575 PF00535 Glycosyl transferase family 2 AFL94_15580 PF02585 GlcNAc-PI de-N-acetylase AFL94_15580 PF13649 Methyltransferase domain AFL94_15590 PF00578 AhpC/TSA family AFL94_15595 PF00875 DNA photolyase AFL94_15595 PF03441 FAD binding domain of DNA photolyase AFL94_15600 PF04961 Formiminotransferase-cyclodeaminase AFL94_15615 PF16242 AFL94_15615 AFL94_15620 PF00171 Aldehyde dehydrogenase family AFL94_15625 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_15625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_15625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_15630 PF07969 Amidohydrolase family AFL94_15635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_15635 PF03466 LysR substrate binding domain AFL94_15640 PF07690 Major Facilitator Superfamily AFL94_15650 PF07905 AFL94_15650 AFL94_15650 PF13556 PucR C-terminal helix-turn-helix domain AFL94_15655 PF01968 Hydantoinase/oxoprolinase AFL94_15655 PF05378 AFL94_15655 AFL94_15660 PF02538 AFL94_15660 AFL94_15670 PF03852 DNA mismatch endonuclease Vsr AFL94_15690 PF00145 C-5 cytosine-specific DNA methylase AFL94_15725 PF12686 AFL94_15725 AFL94_15735 PF07690 Major Facilitator Superfamily AFL94_15740 PF00005 ABC transporter AFL94_15745 PF02361 Cobalt transport protein AFL94_15755 PF01156 Inosine-uridine preferring nucleoside hydrolase AFL94_15760 PF00246 Zinc carboxypeptidase AFL94_15770 PF01268 Formate--tetrahydrofolate ligase AFL94_15775 PF00296 Luciferase-like monooxygenase AFL94_15780 PF01966 HD domain AFL94_15790 PF01614 Bacterial transcriptional regulator AFL94_15790 PF09339 IclR helix-turn-helix domain AFL94_15795 PF00067 Cytochrome P450 AFL94_15800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFL94_15805 PF00391 PEP-utilising enzyme, mobile domain AFL94_15810 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_15815 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_15820 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_15820 PF14759 Reductase C-terminal AFL94_15825 PF01966 HD domain AFL94_15830 PF00171 Aldehyde dehydrogenase family AFL94_15835 PF04960 Glutaminase AFL94_15845 PF07510 AFL94_15845 AFL94_15855 PF00571 CBS domain AFL94_15855 PF01595 AFL94_15855 AFL94_15860 PF00571 CBS domain AFL94_15860 PF01595 AFL94_15860 AFL94_15860 PF03471 Transporter associated domain AFL94_15865 PF01593 Flavin containing amine oxidoreductase AFL94_15870 PF03992 Antibiotic biosynthesis monooxygenase AFL94_15875 PF01757 AFL94_15875 AFL94_15885 PF00072 Response regulator receiver domain AFL94_15885 PF00486 Transcriptional regulatory protein, C terminal AFL94_15890 PF00512 His Kinase A (phospho-acceptor) domain AFL94_15890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_15905 PF03601 AFL94_15905 AFL94_15910 PF04266 ASCH domain AFL94_15915 PF09678 AFL94_15915 AFL94_15920 PF10002 AFL94_15920 AFL94_15925 PF03631 AFL94_15925 AFL94_15935 PF01979 Amidohydrolase family AFL94_15940 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_15940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_15940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_15945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_15945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_15950 PF01261 Xylose isomerase-like TIM barrel AFL94_15955 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFL94_15965 PF13460 NADH(P)-binding AFL94_15970 PF11160 AFL94_15970 AFL94_15975 PF04343 AFL94_15975 AFL94_15980 PF13302 Acetyltransferase (GNAT) domain AFL94_15985 PF01497 Periplasmic binding protein AFL94_15990 PF01032 FecCD transport family AFL94_15995 PF01032 FecCD transport family AFL94_16000 PF00005 ABC transporter AFL94_16010 PF01297 Periplasmic solute binding protein family AFL94_16020 PF00950 AFL94_16020 AFL94_16025 PF00005 ABC transporter AFL94_16035 PF07690 Major Facilitator Superfamily AFL94_16040 PF00440 Bacterial regulatory proteins, tetR family AFL94_16040 PF08359 YsiA-like protein, C-terminal region AFL94_16045 PF01039 Carboxyl transferase domain AFL94_16050 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFL94_16050 PF00364 Biotin-requiring enzyme AFL94_16050 PF02785 Biotin carboxylase C-terminal domain AFL94_16050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_16055 PF01575 MaoC like domain AFL94_16060 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_16085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16085 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16090 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16095 PF00561 alpha/beta hydrolase fold AFL94_16100 PF02595 Glycerate kinase family AFL94_16105 PF05651 AFL94_16105 AFL94_16105 PF13556 PucR C-terminal helix-turn-helix domain AFL94_16115 PF00916 AFL94_16115 AFL94_16115 PF01740 STAS domain AFL94_16125 PF00563 EAL domain AFL94_16135 PF00535 Glycosyl transferase family 2 AFL94_16140 PF00501 AMP-binding enzyme AFL94_16140 PF13193 AMP-binding enzyme C-terminal domain AFL94_16145 PF08818 Domain of unknown function (DU1801) AFL94_16150 PF07690 Major Facilitator Superfamily AFL94_16155 PF08818 Domain of unknown function (DU1801) AFL94_16165 PF00551 Formyl transferase AFL94_16170 PF04268 Sarcosine oxidase, gamma subunit family AFL94_16175 PF01571 Aminomethyltransferase folate-binding domain AFL94_16175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_16175 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFL94_16175 PF13510 2Fe-2S iron-sulfur cluster binding domain AFL94_16180 PF04267 Sarcosine oxidase, delta subunit family AFL94_16185 PF01266 FAD dependent oxidoreductase AFL94_16195 PF00392 Bacterial regulatory proteins, gntR family AFL94_16195 PF07729 FCD domain AFL94_16200 PF07905 AFL94_16200 AFL94_16200 PF13556 PucR C-terminal helix-turn-helix domain AFL94_16205 PF02633 Creatinine amidohydrolase AFL94_16210 PF02028 BCCT family transporter AFL94_16215 PF00557 Metallopeptidase family M24 AFL94_16215 PF01321 Creatinase/Prolidase N-terminal domain AFL94_16220 PF07690 Major Facilitator Superfamily AFL94_16225 PF07690 Major Facilitator Superfamily AFL94_16230 PF01614 Bacterial transcriptional regulator AFL94_16230 PF09339 IclR helix-turn-helix domain AFL94_16240 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AFL94_16245 PF00480 ROK family AFL94_16250 PF00701 Dihydrodipicolinate synthetase family AFL94_16255 PF00005 ABC transporter AFL94_16260 PF00005 ABC transporter AFL94_16260 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_16260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_16265 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_16270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_16275 PF00392 Bacterial regulatory proteins, gntR family AFL94_16275 PF07729 FCD domain AFL94_16280 PF01012 Electron transfer flavoprotein domain AFL94_16285 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_16285 PF01012 Electron transfer flavoprotein domain AFL94_16290 PF01292 Prokaryotic cytochrome b561 AFL94_16295 PF13847 Methyltransferase domain AFL94_16305 PF01614 Bacterial transcriptional regulator AFL94_16305 PF09339 IclR helix-turn-helix domain AFL94_16310 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_16315 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFL94_16315 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AFL94_16320 PF00682 HMGL-like AFL94_16320 PF07836 DmpG-like communication domain AFL94_16325 PF01613 Flavin reductase like domain AFL94_16340 PF00440 Bacterial regulatory proteins, tetR family AFL94_16345 PF01292 Prokaryotic cytochrome b561 AFL94_16350 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_16350 PF01012 Electron transfer flavoprotein domain AFL94_16355 PF01012 Electron transfer flavoprotein domain AFL94_16360 PF01575 MaoC like domain AFL94_16365 PF00106 short chain dehydrogenase AFL94_16370 PF00378 Enoyl-CoA hydratase/isomerase family AFL94_16375 PF01144 Coenzyme A transferase AFL94_16380 PF01144 Coenzyme A transferase AFL94_16385 PF03060 Nitronate monooxygenase AFL94_16400 PF12802 MarR family AFL94_16405 PF07690 Major Facilitator Superfamily AFL94_16410 PF00108 Thiolase, N-terminal domain AFL94_16410 PF02803 Thiolase, C-terminal domain AFL94_16415 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_16420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16420 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_16420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16425 PF00378 Enoyl-CoA hydratase/isomerase family AFL94_16430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16430 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_16430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_16445 PF12823 AFL94_16445 AFL94_16455 PF01144 Coenzyme A transferase AFL94_16460 PF01144 Coenzyme A transferase AFL94_16465 PF00108 Thiolase, N-terminal domain AFL94_16465 PF02803 Thiolase, C-terminal domain AFL94_16470 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_16480 PF07690 Major Facilitator Superfamily AFL94_16485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_16500 PF12802 MarR family AFL94_16505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_16515 PF00239 Resolvase, N terminal domain AFL94_16515 PF02796 Helix-turn-helix domain of resolvase AFL94_16525 PF01042 Endoribonuclease L-PSP AFL94_16530 PF01638 HxlR-like helix-turn-helix AFL94_16560 PF13614 AAA domain AFL94_16570 PF01551 Peptidase family M23 AFL94_16575 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFL94_16580 PF00892 EamA-like transporter family AFL94_16585 PF13560 Helix-turn-helix domain AFL94_16590 PF01613 Flavin reductase like domain AFL94_16595 PF00772 DnaB-like helicase N terminal domain AFL94_16595 PF03796 DnaB-like helicase C terminal domain AFL94_16605 PF07690 Major Facilitator Superfamily AFL94_16615 PF14542 GCN5-related N-acetyl-transferase AFL94_16620 PF02678 Pirin AFL94_16620 PF05726 Pirin C-terminal cupin domain AFL94_16625 PF01047 MarR family AFL94_16635 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFL94_16640 PF00106 short chain dehydrogenase AFL94_16650 PF00440 Bacterial regulatory proteins, tetR family AFL94_16670 PF09349 OHCU decarboxylase AFL94_16675 PF00576 HIUase/Transthyretin family AFL94_16680 PF01014 Uricase AFL94_16685 PF00860 Permease family AFL94_16695 PF07969 Amidohydrolase family AFL94_16700 PF00440 Bacterial regulatory proteins, tetR family AFL94_16700 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFL94_16705 PF13520 Amino acid permease AFL94_16710 PF00795 Carbon-nitrogen hydrolase AFL94_16730 PF00106 short chain dehydrogenase AFL94_16735 PF00892 EamA-like transporter family AFL94_16740 PF01381 Helix-turn-helix AFL94_16740 PF07883 Cupin domain AFL94_16745 PF07690 Major Facilitator Superfamily AFL94_16750 PF00324 Amino acid permease AFL94_16755 PF06772 AFL94_16755 AFL94_16760 PF00480 ROK family AFL94_16770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16775 PF01261 Xylose isomerase-like TIM barrel AFL94_16775 PF07582 AP endonuclease family 2 C terminus AFL94_16780 PF00294 pfkB family carbohydrate kinase AFL94_16790 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_16790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_16790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_16795 PF00171 Aldehyde dehydrogenase family AFL94_16800 PF01261 Xylose isomerase-like TIM barrel AFL94_16805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16810 PF01261 Xylose isomerase-like TIM barrel AFL94_16815 PF00083 Sugar (and other) transporter AFL94_16820 PF00582 Universal stress protein family AFL94_16825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16825 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16830 PF00356 Bacterial regulatory proteins, lacI family AFL94_16830 PF13377 Periplasmic binding protein-like domain AFL94_16835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16840 PF01261 Xylose isomerase-like TIM barrel AFL94_16845 PF04962 KduI/IolB family AFL94_16850 PF00392 Bacterial regulatory proteins, gntR family AFL94_16850 PF07702 UTRA domain AFL94_16855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16860 PF00356 Bacterial regulatory proteins, lacI family AFL94_16860 PF13377 Periplasmic binding protein-like domain AFL94_16865 PF13407 Periplasmic binding protein domain AFL94_16870 PF02653 AFL94_16870 AFL94_16875 PF00005 ABC transporter AFL94_16880 PF00356 Bacterial regulatory proteins, lacI family AFL94_16880 PF13377 Periplasmic binding protein-like domain AFL94_16885 PF01261 Xylose isomerase-like TIM barrel AFL94_16890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16895 PF13407 Periplasmic binding protein domain AFL94_16900 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_16900 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_16905 PF01261 Xylose isomerase-like TIM barrel AFL94_16910 PF00440 Bacterial regulatory proteins, tetR family AFL94_16910 PF16859 AFL94_16910 AFL94_16915 PF00122 E1-E2 ATPase AFL94_16915 PF00702 haloacid dehalogenase-like hydrolase AFL94_16920 PF00005 ABC transporter AFL94_16920 PF00664 ABC transporter transmembrane region AFL94_16925 PF00890 FAD binding domain AFL94_16935 PF01614 Bacterial transcriptional regulator AFL94_16935 PF09339 IclR helix-turn-helix domain AFL94_16940 PF00390 Malic enzyme, N-terminal domain AFL94_16940 PF03949 Malic enzyme, NAD binding domain AFL94_16945 PF01274 Malate synthase AFL94_16950 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_16955 PF07883 Cupin domain AFL94_16965 PF12796 Ankyrin repeats (3 copies) AFL94_16970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_16980 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_16985 PF12697 Alpha/beta hydrolase family AFL94_16990 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_16990 PF00175 Oxidoreductase NAD-binding domain AFL94_16990 PF00970 Oxidoreductase FAD-binding domain AFL94_17005 PF00890 FAD binding domain AFL94_17010 PF00378 Enoyl-CoA hydratase/isomerase family AFL94_17015 PF00501 AMP-binding enzyme AFL94_17015 PF13193 AMP-binding enzyme C-terminal domain AFL94_17025 PF00005 ABC transporter AFL94_17030 PF00440 Bacterial regulatory proteins, tetR family AFL94_17035 PF00665 Integrase core domain AFL94_17035 PF13276 AFL94_17035 AFL94_17040 PF01527 Transposase AFL94_17050 PF13091 PLD-like domain AFL94_17055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFL94_17055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFL94_17060 PF00083 Sugar (and other) transporter AFL94_17075 PF00665 Integrase core domain AFL94_17075 PF13276 AFL94_17075 AFL94_17090 PF01266 FAD dependent oxidoreductase AFL94_17095 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_17100 PF01758 Sodium Bile acid symporter family AFL94_17105 PF01022 Bacterial regulatory protein, arsR family AFL94_17115 PF00440 Bacterial regulatory proteins, tetR family AFL94_17115 PF08359 YsiA-like protein, C-terminal region AFL94_17115 PF08362 YcdC-like protein, C-terminal region AFL94_17120 PF00561 alpha/beta hydrolase fold AFL94_17125 PF04303 PrpF protein AFL94_17130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_17140 PF00355 Rieske [2Fe-2S] domain AFL94_17145 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_17150 PF07690 Major Facilitator Superfamily AFL94_17155 PF07690 Major Facilitator Superfamily AFL94_17160 PF00108 Thiolase, N-terminal domain AFL94_17160 PF02803 Thiolase, C-terminal domain AFL94_17170 PF13577 SnoaL-like domain AFL94_17180 PF16259 AFL94_17180 AFL94_17190 PF01548 AFL94_17190 AFL94_17200 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_17200 PF13602 Zinc-binding dehydrogenase AFL94_17205 PF01527 Transposase AFL94_17210 PF01527 Transposase AFL94_17215 PF00665 Integrase core domain AFL94_17215 PF13276 AFL94_17215 AFL94_17245 PF12802 MarR family AFL94_17265 PF01057 Parvovirus non-structural protein NS1 AFL94_17265 PF08724 Rep protein catalytic domain like AFL94_17270 PF00740 Parvovirus coat protein VP2 AFL94_17270 PF08398 AFL94_17270 AFL94_17275 PF01636 Phosphotransferase enzyme family AFL94_17280 PF00313 'Cold-shock' DNA-binding domain AFL94_17285 PF00762 Ferrochelatase AFL94_17290 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFL94_17295 PF06769 Plasmid encoded toxin Txe AFL94_17300 PF00589 Phage integrase family AFL94_17315 PF00487 AFL94_17315 AFL94_17325 PF06305 AFL94_17325 AFL94_17330 PF00781 Diacylglycerol kinase catalytic domain AFL94_17335 PF00239 Resolvase, N terminal domain AFL94_17335 PF02796 Helix-turn-helix domain of resolvase AFL94_17355 PF00501 AMP-binding enzyme AFL94_17355 PF13193 AMP-binding enzyme C-terminal domain AFL94_17360 PF01872 RibD C-terminal domain AFL94_17365 PF07995 Glucose / Sorbosone dehydrogenase AFL94_17370 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AFL94_17370 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AFL94_17380 PF03713 Domain of unknown function (DUF305) AFL94_17390 PF03779 AFL94_17390 AFL94_17400 PF08543 Phosphomethylpyrimidine kinase AFL94_17405 PF01281 Ribosomal protein L9, N-terminal domain AFL94_17405 PF03948 Ribosomal protein L9, C-terminal domain AFL94_17410 PF01084 Ribosomal protein S18 AFL94_17415 PF00436 Single-strand binding protein family AFL94_17420 PF01250 Ribosomal protein S6 AFL94_17425 PF01757 AFL94_17425 AFL94_17430 PF01266 FAD dependent oxidoreductase AFL94_17435 PF03803 AFL94_17435 AFL94_17445 PF02127 Aminopeptidase I zinc metalloprotease (M18) AFL94_17450 PF06305 AFL94_17450 AFL94_17455 PF00072 Response regulator receiver domain AFL94_17455 PF00196 Bacterial regulatory proteins, luxR family AFL94_17460 PF07730 Histidine kinase AFL94_17470 PF00005 ABC transporter AFL94_17475 PF02698 DUF218 domain AFL94_17485 PF01548 AFL94_17485 AFL94_17485 PF02371 AFL94_17485 AFL94_17495 PF00501 AMP-binding enzyme AFL94_17495 PF13193 AMP-binding enzyme C-terminal domain AFL94_17495 PF16177 AFL94_17495 AFL94_17500 PF07883 Cupin domain AFL94_17505 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_17520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_17525 PF01494 FAD binding domain AFL94_17530 PF00171 Aldehyde dehydrogenase family AFL94_17535 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFL94_17540 PF00701 Dihydrodipicolinate synthetase family AFL94_17545 PF07690 Major Facilitator Superfamily AFL94_17550 PF13407 Periplasmic binding protein domain AFL94_17555 PF00005 ABC transporter AFL94_17560 PF02653 AFL94_17560 AFL94_17565 PF02653 AFL94_17565 AFL94_17570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_17575 PF03061 Thioesterase superfamily AFL94_17580 PF00108 Thiolase, N-terminal domain AFL94_17580 PF02803 Thiolase, C-terminal domain AFL94_17585 PF00440 Bacterial regulatory proteins, tetR family AFL94_17585 PF16859 AFL94_17585 AFL94_17600 PF12833 Helix-turn-helix domain AFL94_17600 PF14525 AFL94_17600 AFL94_17610 PF01527 Transposase AFL94_17620 PF01565 FAD binding domain AFL94_17620 PF02913 FAD linked oxidases, C-terminal domain AFL94_17625 PF13561 Enoyl-(Acyl carrier protein) reductase AFL94_17630 PF13358 DDE superfamily endonuclease AFL94_17630 PF13551 Winged helix-turn helix AFL94_17640 PF01593 Flavin containing amine oxidoreductase AFL94_17650 PF02348 Cytidylyltransferase AFL94_17650 PF08282 haloacid dehalogenase-like hydrolase AFL94_17655 PF03102 NeuB family AFL94_17660 PF00535 Glycosyl transferase family 2 AFL94_17680 PF01658 Myo-inositol-1-phosphate synthase AFL94_17685 PF01743 Poly A polymerase head domain AFL94_17685 PF01966 HD domain AFL94_17685 PF12627 Probable RNA and SrmB- binding site of polymerase A AFL94_17690 PF00293 NUDIX domain AFL94_17695 PF03023 AFL94_17695 AFL94_17705 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_17710 PF00085 Thioredoxin AFL94_17720 PF02195 ParB-like nuclease domain AFL94_17725 PF13614 AAA domain AFL94_17730 PF02527 rRNA small subunit methyltransferase G AFL94_17735 PF01424 R3H domain AFL94_17735 PF13083 KH domain AFL94_17740 PF02096 60Kd inner membrane protein AFL94_17745 PF01809 AFL94_17745