AFL94_00005	SM00382	ATPases associated with a variety of cellular activities
AFL94_00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
AFL94_00010	SM00480	DNA polymerase III beta subunit
AFL94_00025	SM00387	Histidine kinase-like ATPases
AFL94_00025	SM00433	TopoisomeraseII
AFL94_00030	SM00434	DNA Topoisomerase IV
AFL94_00120	SM00220	Serine/Threonine protein kinases, catalytic domain
AFL94_00120	SM00740	AFL94_00120
AFL94_00125	SM00220	Serine/Threonine protein kinases, catalytic domain
AFL94_00125	SM00740	AFL94_00125
AFL94_00140	SM00331	Sigma factor PP2C-like phosphatases
AFL94_00140	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AFL94_00145	SM00240	Forkhead associated domain
AFL94_00150	SM00240	Forkhead associated domain
AFL94_00170	SM00354	helix_turn _helix lactose operon repressor
AFL94_00255	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_00290	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_00305	SM00450	Rhodanese Homology Domain
AFL94_00315	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AFL94_00345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_00390	SM00382	ATPases associated with a variety of cellular activities
AFL94_00405	SM00905	Dihydroneopterin aldolase
AFL94_00455	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_00500	SM00382	ATPases associated with a variety of cellular activities
AFL94_00500	SM01086	C-terminal, D2-small domain, of ClpB protein
AFL94_00520	SM00342	helix_turn_helix, arabinose operon control protein
AFL94_00540	SM00478	endonuclease III
AFL94_00540	SM00525	AFL94_00540
AFL94_00555	SM00382	ATPases associated with a variety of cellular activities
AFL94_00580	SM00382	ATPases associated with a variety of cellular activities
AFL94_00590	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_00645	SM00382	ATPases associated with a variety of cellular activities
AFL94_00660	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_00665	SM00862	Transcriptional regulatory protein, C terminal
AFL94_00675	SM00829	Enoylreductase
AFL94_00725	SM00450	Rhodanese Homology Domain
AFL94_00730	SM00450	Rhodanese Homology Domain
AFL94_00730	SM00849	Metallo-beta-lactamase superfamily
AFL94_00745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_00745	SM00895	AFL94_00745
AFL94_00765	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_00825	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AFL94_00935	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_00990	SM00382	ATPases associated with a variety of cellular activities
AFL94_01025	SM00220	Serine/Threonine protein kinases, catalytic domain
AFL94_01080	SM00448	cheY-homologous receiver domain
AFL94_01080	SM00862	Transcriptional regulatory protein, C terminal
AFL94_01085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AFL94_01085	SM00387	Histidine kinase-like ATPases
AFL94_01085	SM00388	His Kinase A (phosphoacceptor) domain
AFL94_01095	SM00344	helix_turn_helix ASNC type
AFL94_01135	SM00938	Nitrogen regulatory protein P-II
AFL94_01185	SM00788	Adenylosuccinate synthetase
AFL94_01200	SM00382	ATPases associated with a variety of cellular activities
AFL94_01205	SM00028	Tetratricopeptide repeats
AFL94_01250	SM00420	helix_turn_helix, Deoxyribose operon repressor
AFL94_01250	SM01134	AFL94_01250
AFL94_01275	SM00881	CoA binding domain
AFL94_01285	SM00855	Phosphoglycerate mutase family
AFL94_01325	SM00062	Bacterial periplasmic substrate-binding proteins
AFL94_01330	SM00382	ATPases associated with a variety of cellular activities
AFL94_01380	SM00382	ATPases associated with a variety of cellular activities
AFL94_01405	SM00881	CoA binding domain
AFL94_01485	SM01211	AFL94_01485
AFL94_01500	SM00248	ankyrin repeats
AFL94_01535	SM00387	Histidine kinase-like ATPases
AFL94_01540	SM00448	cheY-homologous receiver domain
AFL94_01560	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_01590	SM00507	HNH nucleases
AFL94_01605	SM00448	cheY-homologous receiver domain
AFL94_01605	SM00862	Transcriptional regulatory protein, C terminal
AFL94_01640	SM00855	Phosphoglycerate mutase family
AFL94_01675	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_01685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_01690	SM01005	Alanine racemase, C-terminal domain
AFL94_01755	SM00382	ATPases associated with a variety of cellular activities
AFL94_01755	SM01086	C-terminal, D2-small domain, of ClpB protein
AFL94_01760	SM00421	helix_turn_helix, Lux Regulon
AFL94_01760	SM00448	cheY-homologous receiver domain
AFL94_01835	SM00382	ATPases associated with a variety of cellular activities
AFL94_01865	SM00822	AFL94_01865
AFL94_01880	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AFL94_01880	SM01232	AFL94_01880
AFL94_01885	SM00382	ATPases associated with a variety of cellular activities
AFL94_01885	SM00487	DEAD-like helicases superfamily
AFL94_01885	SM00490	helicase superfamily c-terminal domain
AFL94_01930	SM00382	ATPases associated with a variety of cellular activities
AFL94_01965	SM00998	Adenylosuccinate lyase C-terminus
AFL94_01990	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_02005	SM00882	Coenzyme A transferase
AFL94_02010	SM00882	Coenzyme A transferase
AFL94_02015	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_02045	SM00852	Probable molybdopterin binding domain
AFL94_02055	SM00852	Probable molybdopterin binding domain
AFL94_02065	SM00450	Rhodanese Homology Domain
AFL94_02090	SM00729	Elongator protein 3, MiaB family, Radical SAM
AFL94_02110	SM00852	Probable molybdopterin binding domain
AFL94_02145	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AFL94_02160	SM01322	AFL94_02160
AFL94_02190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AFL94_02190	SM00387	Histidine kinase-like ATPases
AFL94_02190	SM00388	His Kinase A (phosphoacceptor) domain
AFL94_02195	SM00448	cheY-homologous receiver domain
AFL94_02195	SM00862	Transcriptional regulatory protein, C terminal
AFL94_02200	SM00862	Transcriptional regulatory protein, C terminal
AFL94_02205	SM00855	Phosphoglycerate mutase family
AFL94_02260	SM00354	helix_turn _helix lactose operon repressor
AFL94_02320	SM00487	DEAD-like helicases superfamily
AFL94_02320	SM00490	helicase superfamily c-terminal domain
AFL94_02350	SM00829	Enoylreductase
AFL94_02395	SM00382	ATPases associated with a variety of cellular activities
AFL94_02415	SM00855	Phosphoglycerate mutase family
AFL94_02430	SM00387	Histidine kinase-like ATPases
AFL94_02430	SM00388	His Kinase A (phosphoacceptor) domain
AFL94_02435	SM00448	cheY-homologous receiver domain
AFL94_02435	SM00862	Transcriptional regulatory protein, C terminal
AFL94_02445	SM01058	CarD-like/TRCF domain
AFL94_02455	SM00840	AFL94_02455
AFL94_02460	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AFL94_02520	SM00382	ATPases associated with a variety of cellular activities
AFL94_02605	SM00986	Uracil DNA glycosylase superfamily
AFL94_02605	SM00987	UreE urease accessory protein, C-terminal domain 
AFL94_02640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AFL94_02640	SM00387	Histidine kinase-like ATPases
AFL94_02640	SM00388	His Kinase A (phosphoacceptor) domain
AFL94_02645	SM00448	cheY-homologous receiver domain
AFL94_02645	SM00862	Transcriptional regulatory protein, C terminal
AFL94_02655	SM00357	Cold shock protein domain
AFL94_02670	SM00529	Helix-turn-helix diphteria tox regulatory element
AFL94_02685	SM00507	HNH nucleases
AFL94_02720	SM00881	CoA binding domain
AFL94_02755	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_02865	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_02875	SM00382	ATPases associated with a variety of cellular activities
AFL94_02930	SM00257	Lysin motif
AFL94_02985	SM00872	Alpha mannosidase, middle domain
AFL94_03020	SM00798	AICARFT/IMPCHase bienzyme
AFL94_03020	SM00851	MGS-like domain
AFL94_03065	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_03075	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_03075	SM00895	AFL94_03075
AFL94_03080	SM00878	Biotin carboxylase C-terminal domain
AFL94_03085	SM00796	Allophanate hydrolase subunit 1
AFL94_03085	SM00797	Allophanate hydrolase subunit 2
AFL94_03095	SM01060	AFL94_03095
AFL94_03120	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AFL94_03125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_03125	SM00895	AFL94_03125
AFL94_03135	SM00822	AFL94_03135
AFL94_03170	SM00382	ATPases associated with a variety of cellular activities
AFL94_03245	SM00342	helix_turn_helix, arabinose operon control protein
AFL94_03245	SM00871	Bacterial transcription activator, effector binding domain
AFL94_03290	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_03320	SM00421	helix_turn_helix, Lux Regulon
AFL94_03320	SM00448	cheY-homologous receiver domain
AFL94_03385	SM00421	helix_turn_helix, Lux Regulon
AFL94_03450	SM00382	ATPases associated with a variety of cellular activities
AFL94_03470	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AFL94_03495	SM01192	AFL94_03495
AFL94_03495	SM01193	AFL94_03495
AFL94_03580	SM00670	Large family of predicted nucleotide-binding domains
AFL94_03630	SM00947	Carbonic anhydrase
AFL94_03655	SM01001	AIR carboxylase
AFL94_03730	SM00460	Transglutaminase/protease-like homologues
AFL94_03750	SM01208	AFL94_03750
AFL94_03755	SM00650	Ribosomal RNA adenine dimethylases
AFL94_03790	SM00382	ATPases associated with a variety of cellular activities
AFL94_03805	SM01400	AFL94_03805
AFL94_03850	SM00487	DEAD-like helicases superfamily
AFL94_03850	SM00490	helicase superfamily c-terminal domain
AFL94_03850	SM00982	AFL94_03850
AFL94_03850	SM01058	CarD-like/TRCF domain
AFL94_03870	SM01133	AFL94_03870
AFL94_03910	SM00878	Biotin carboxylase C-terminal domain
AFL94_03955	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_04005	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
AFL94_04015	SM00292	breast cancer carboxy-terminal domain
AFL94_04015	SM00532	Ligase N family
AFL94_04085	SM00845	GatB domain
AFL94_04120	SM00382	ATPases associated with a variety of cellular activities
AFL94_04125	SM00382	ATPases associated with a variety of cellular activities
AFL94_04155	SM00829	Enoylreductase
AFL94_04165	SM00354	helix_turn _helix lactose operon repressor
AFL94_04190	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_04265	SM00420	helix_turn_helix, Deoxyribose operon repressor
AFL94_04265	SM01134	AFL94_04265
AFL94_04365	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AFL94_04370	SM00400	zinc finger
AFL94_04370	SM00493	AFL94_04370
AFL94_04395	SM00382	ATPases associated with a variety of cellular activities
AFL94_04415	SM01006	Siderophore biosynthesis protein domain
AFL94_04510	SM00448	cheY-homologous receiver domain
AFL94_04510	SM00850	LytTr DNA-binding domain
AFL94_04515	SM00387	Histidine kinase-like ATPases
AFL94_04535	SM01209	AFL94_04535
AFL94_04545	SM00344	helix_turn_helix ASNC type
AFL94_04555	SM00861	Transketolase, pyrimidine binding domain
AFL94_04580	SM00382	ATPases associated with a variety of cellular activities
AFL94_04600	SM00382	ATPases associated with a variety of cellular activities
AFL94_04625	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AFL94_04685	SM00421	helix_turn_helix, Lux Regulon
AFL94_04685	SM00448	cheY-homologous receiver domain
AFL94_04750	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
AFL94_04775	SM00507	HNH nucleases
AFL94_04800	SM00904	Riboflavin kinase
AFL94_04810	SM01387	AFL94_04810
AFL94_04850	SM00342	helix_turn_helix, arabinose operon control protein
AFL94_04900	SM00387	Histidine kinase-like ATPases
AFL94_04905	SM00448	cheY-homologous receiver domain
AFL94_04920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_04920	SM00895	AFL94_04920
AFL94_04925	SM00316	Ribosomal protein S1-like RNA-binding domain
AFL94_04925	SM00322	K homology RNA-binding domain
AFL94_04940	SM00342	helix_turn_helix, arabinose operon control protein
AFL94_04955	SM00903	Flavin reductase like domain
AFL94_04970	SM00903	Flavin reductase like domain
AFL94_04980	SM00342	helix_turn_helix, arabinose operon control protein
AFL94_05150	SM01130	AFL94_05150
AFL94_05155	SM00849	Metallo-beta-lactamase superfamily
AFL94_05175	SM00382	ATPases associated with a variety of cellular activities
AFL94_05195	SM00382	ATPases associated with a variety of cellular activities
AFL94_05195	SM00843	AFL94_05195
AFL94_05210	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_05220	SM00382	ATPases associated with a variety of cellular activities
AFL94_05230	SM00729	Elongator protein 3, MiaB family, Radical SAM
AFL94_05255	SM00487	DEAD-like helicases superfamily
AFL94_05255	SM00491	AFL94_05255
AFL94_05265	SM00257	Lysin motif
AFL94_05320	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AFL94_05340	SM00873	B3/4 domain
AFL94_05340	SM00874	tRNA synthetase B5 domain
AFL94_05340	SM00896	Ferredoxin-fold anticodon binding domain
AFL94_05390	SM00829	Enoylreductase
AFL94_05395	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AFL94_05425	SM00506	Appr-1"-p processing enzyme
AFL94_05490	SM00363	S4 RNA-binding domain
AFL94_05525	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_05550	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_05550	SM00895	AFL94_05550
AFL94_05565	SM00448	cheY-homologous receiver domain
AFL94_05570	SM00387	Histidine kinase-like ATPases
AFL94_05600	SM00363	S4 RNA-binding domain
AFL94_05635	SM00382	ATPases associated with a variety of cellular activities
AFL94_05650	SM00240	Forkhead associated domain
AFL94_05655	SM00422	helix_turn_helix, mercury resistance
AFL94_05665	SM00422	helix_turn_helix, mercury resistance
AFL94_05675	SM00878	Biotin carboxylase C-terminal domain
AFL94_05700	SM00563	Phosphate acyltransferases
AFL94_05765	SM00937	AFL94_05765
AFL94_05770	SM00382	ATPases associated with a variety of cellular activities
AFL94_05810	SM00529	Helix-turn-helix diphteria tox regulatory element
AFL94_05845	SM00861	Transketolase, pyrimidine binding domain
AFL94_05850	SM01091	Transporter associated domain
AFL94_05860	SM00382	ATPases associated with a variety of cellular activities
AFL94_05885	SM00849	Metallo-beta-lactamase superfamily
AFL94_05890	SM00450	Rhodanese Homology Domain
AFL94_05900	SM00382	ATPases associated with a variety of cellular activities
AFL94_05900	SM00487	DEAD-like helicases superfamily
AFL94_05900	SM00490	helicase superfamily c-terminal domain
AFL94_05900	SM00847	Helicase associated domain (HA2)  Add an annotation
AFL94_05915	SM00382	ATPases associated with a variety of cellular activities
AFL94_05925	SM00836	DALR anticodon binding domain
AFL94_05925	SM01016	Arginyl tRNA synthetase N terminal dom
AFL94_05950	SM00357	Cold shock protein domain
AFL94_05950	SM00382	ATPases associated with a variety of cellular activities
AFL94_05950	SM00959	Rho termination factor, N-terminal domain
AFL94_05955	SM00937	AFL94_05955
AFL94_06010	SM00382	ATPases associated with a variety of cellular activities
AFL94_06055	SM00382	ATPases associated with a variety of cellular activities
AFL94_06065	SM00507	HNH nucleases
AFL94_06075	SM00382	ATPases associated with a variety of cellular activities
AFL94_06075	SM00487	DEAD-like helicases superfamily
AFL94_06160	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_06165	SM00382	ATPases associated with a variety of cellular activities
AFL94_06175	SM00479	AFL94_06175
AFL94_06205	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_06215	SM00354	helix_turn _helix lactose operon repressor
AFL94_06220	SM00642	Alpha-amylase domain
AFL94_06260	SM00507	HNH nucleases
AFL94_06270	SM00382	ATPases associated with a variety of cellular activities
AFL94_06270	SM00487	DEAD-like helicases superfamily
AFL94_06355	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_06360	SM00382	ATPases associated with a variety of cellular activities
AFL94_06370	SM00479	AFL94_06370
AFL94_06400	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_06410	SM00354	helix_turn _helix lactose operon repressor
AFL94_06415	SM00642	Alpha-amylase domain
AFL94_06460	SM00382	ATPases associated with a variety of cellular activities
AFL94_06470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AFL94_06490	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_06490	SM00895	AFL94_06490
AFL94_06500	SM00507	HNH nucleases
AFL94_06515	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_06585	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_06670	SM00382	ATPases associated with a variety of cellular activities
AFL94_06840	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_06900	SM00052	Putative diguanylate phosphodiesterase
AFL94_06900	SM00267	diguanylate cyclase
AFL94_06970	SM00421	helix_turn_helix, Lux Regulon
AFL94_06975	SM00421	helix_turn_helix, Lux Regulon
AFL94_07200	SM00421	helix_turn_helix, Lux Regulon
AFL94_07200	SM00448	cheY-homologous receiver domain
AFL94_07210	SM01329	AFL94_07210
AFL94_07290	SM00563	Phosphate acyltransferases
AFL94_07315	SM01120	AFL94_07315
AFL94_07320	SM00487	DEAD-like helicases superfamily
AFL94_07320	SM00490	helicase superfamily c-terminal domain
AFL94_07360	SM00382	ATPases associated with a variety of cellular activities
AFL94_07420	SM00358	Double-stranded RNA binding motif
AFL94_07420	SM00535	Ribonuclease III family
AFL94_07425	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AFL94_07425	SM01232	AFL94_07425
AFL94_07435	SM00968	SMC proteins Flexible Hinge Domain
AFL94_07445	SM00382	ATPases associated with a variety of cellular activities
AFL94_07445	SM00962	SRP54-type protein, GTPase domain
AFL94_07445	SM00963	SRP54-type protein, helical bundle domain
AFL94_07465	SM00382	ATPases associated with a variety of cellular activities
AFL94_07465	SM00962	SRP54-type protein, GTPase domain
AFL94_07465	SM00963	SRP54-type protein, helical bundle domain
AFL94_07525	SM00155	Phospholipase D. Active site motifs.
AFL94_07585	SM00479	AFL94_07585
AFL94_07600	SM00829	Enoylreductase
AFL94_07610	SM00421	helix_turn_helix, Lux Regulon
AFL94_07655	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AFL94_07720	SM00829	Enoylreductase
AFL94_07740	SM01350	AFL94_07740
AFL94_07745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_07745	SM00895	AFL94_07745
AFL94_07820	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AFL94_07830	SM00825	Beta-ketoacyl synthase
AFL94_07860	SM00382	ATPases associated with a variety of cellular activities
AFL94_07925	SM00507	HNH nucleases
AFL94_07955	SM00954	Region found in RelA / SpoT proteins
AFL94_07960	SM00382	ATPases associated with a variety of cellular activities
AFL94_07985	SM00822	AFL94_07985
AFL94_07995	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_08020	SM00382	ATPases associated with a variety of cellular activities
AFL94_08040	SM00829	Enoylreductase
AFL94_08110	SM00822	AFL94_08110
AFL94_08150	SM00448	cheY-homologous receiver domain
AFL94_08150	SM00862	Transcriptional regulatory protein, C terminal
AFL94_08155	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AFL94_08155	SM00387	Histidine kinase-like ATPases
AFL94_08155	SM00388	His Kinase A (phosphoacceptor) domain
AFL94_08215	SM00382	ATPases associated with a variety of cellular activities
AFL94_08265	SM00487	DEAD-like helicases superfamily
AFL94_08265	SM00490	helicase superfamily c-terminal domain
AFL94_08265	SM01142	AFL94_08265
AFL94_08285	SM00244	prohibitin homologues
AFL94_08310	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_08310	SM00419	helix_turn_helix, cAMP Regulatory protein
AFL94_08380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_08380	SM00866	AFL94_08380
AFL94_08435	SM00917	LeuA allosteric (dimerisation) domain
AFL94_08450	SM00116	Domain in cystathionine beta-synthase and other proteins.
AFL94_08450	SM01091	Transporter associated domain
AFL94_08475	SM00271	DnaJ molecular chaperone homology domain
AFL94_08495	SM00729	Elongator protein 3, MiaB family, Radical SAM
AFL94_08500	SM00838	Elongation factor G C-terminus
AFL94_08525	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AFL94_08595	SM01409	AFL94_08595
AFL94_08600	SM00072	Guanylate kinase homologues.
AFL94_08610	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AFL94_08615	SM00851	MGS-like domain
AFL94_08615	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AFL94_08620	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AFL94_08650	SM00841	Elongation factor P, C-terminal
AFL94_08650	SM01185	AFL94_08650
AFL94_08685	SM00732	Likely ribonuclease with RNase H fold.
AFL94_08690	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AFL94_08970	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_08990	SM00363	S4 RNA-binding domain
AFL94_08990	SM01390	AFL94_08990
AFL94_08995	SM00382	ATPases associated with a variety of cellular activities
AFL94_09035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AFL94_09035	SM00954	Region found in RelA / SpoT proteins
AFL94_09050	SM01323	AFL94_09050
AFL94_09055	SM00382	ATPases associated with a variety of cellular activities
AFL94_09060	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AFL94_09080	SM00854	Bacterial capsule synthesis protein PGA_cap
AFL94_09130	SM00420	helix_turn_helix, Deoxyribose operon repressor
AFL94_09130	SM01134	AFL94_09130
AFL94_09145	SM00382	ATPases associated with a variety of cellular activities
AFL94_09180	SM00729	Elongator protein 3, MiaB family, Radical SAM
AFL94_09180	SM00876	Biotin and Thiamin Synthesis associated domain
AFL94_09190	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AFL94_09225	SM00481	DNA polymerase alpha chain like domain
AFL94_09255	SM00829	Enoylreductase
AFL94_09260	SM00849	Metallo-beta-lactamase superfamily
AFL94_09295	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_09305	SM00357	Cold shock protein domain
AFL94_09410	SM00382	ATPases associated with a variety of cellular activities
AFL94_09440	SM00822	AFL94_09440
AFL94_09445	SM00344	helix_turn_helix ASNC type
AFL94_09545	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AFL94_09565	SM00316	Ribosomal protein S1-like RNA-binding domain
AFL94_09570	SM00756	AFL94_09570
AFL94_09600	SM00562	AFL94_09600
AFL94_09630	SM00387	Histidine kinase-like ATPases
AFL94_09635	SM00421	helix_turn_helix, Lux Regulon
AFL94_09635	SM00448	cheY-homologous receiver domain
AFL94_09650	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_09690	SM00382	ATPases associated with a variety of cellular activities
AFL94_09755	SM00382	ATPases associated with a variety of cellular activities
AFL94_09755	SM00994	ClpX C4-type zinc finger
AFL94_09755	SM01086	C-terminal, D2-small domain, of ClpB protein
AFL94_09790	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AFL94_09790	SM01232	AFL94_09790
AFL94_09825	SM00422	helix_turn_helix, mercury resistance
AFL94_09830	SM00903	Flavin reductase like domain
AFL94_09835	SM00382	ATPases associated with a variety of cellular activities
AFL94_09865	SM00344	helix_turn_helix ASNC type
AFL94_09875	SM00382	ATPases associated with a variety of cellular activities
AFL94_09910	SM00382	ATPases associated with a variety of cellular activities
AFL94_09930	SM00382	ATPases associated with a variety of cellular activities
AFL94_09960	SM00861	Transketolase, pyrimidine binding domain
AFL94_10020	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AFL94_10045	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AFL94_10045	SM00465	GIY-YIG type nucleases (URI domain)
AFL94_10050	SM00563	Phosphate acyltransferases
AFL94_10075	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_10080	SM00849	Metallo-beta-lactamase superfamily
AFL94_10095	SM00487	DEAD-like helicases superfamily
AFL94_10095	SM00490	helicase superfamily c-terminal domain
AFL94_10115	SM00235	Zinc-dependent metalloprotease
AFL94_10150	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_10160	SM00487	DEAD-like helicases superfamily
AFL94_10160	SM00490	helicase superfamily c-terminal domain
AFL94_10190	SM01043	Bacterial transcriptional activator domain
AFL94_10220	SM00316	Ribosomal protein S1-like RNA-binding domain
AFL94_10235	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AFL94_10235	SM00474	3'-5' exonuclease
AFL94_10235	SM00475	5'-3' exonuclease
AFL94_10235	SM00482	DNA polymerase A domain
AFL94_10260	SM00448	cheY-homologous receiver domain
AFL94_10260	SM01012	AFL94_10260
AFL94_10450	SM00450	Rhodanese Homology Domain
AFL94_10495	SM00341	Helicase and RNase D C-terminal
AFL94_10495	SM00474	3'-5' exonuclease
AFL94_10555	SM00861	Transketolase, pyrimidine binding domain
AFL94_10670	SM00881	CoA binding domain
AFL94_10675	SM00434	DNA Topoisomerase IV
AFL94_10680	SM00382	ATPases associated with a variety of cellular activities
AFL94_10705	SM00387	Histidine kinase-like ATPases
AFL94_10705	SM00433	TopoisomeraseII
AFL94_10755	SM00220	Serine/Threonine protein kinases, catalytic domain
AFL94_10765	SM00729	Elongator protein 3, MiaB family, Radical SAM
AFL94_10780	SM01230	AFL94_10780
AFL94_10805	SM01230	AFL94_10805
AFL94_10835	SM00481	DNA polymerase alpha chain like domain
AFL94_10840	SM00363	S4 RNA-binding domain
AFL94_10870	SM00864	Tubulin/FtsZ family, GTPase domain
AFL94_10870	SM00865	Tubulin/FtsZ family, C-terminal domain
AFL94_10960	SM00387	Histidine kinase-like ATPases
AFL94_10995	SM00957	SecA DEAD-like domain
AFL94_10995	SM00958	SecA preprotein cross-linking domain
AFL94_11015	SM00909	Sporulation and spore germination
AFL94_11020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AFL94_11020	SM00387	Histidine kinase-like ATPases
AFL94_11020	SM00388	His Kinase A (phosphoacceptor) domain
AFL94_11025	SM00448	cheY-homologous receiver domain
AFL94_11025	SM00862	Transcriptional regulatory protein, C terminal
AFL94_11035	SM00830	Chorismate mutase type II
AFL94_11040	SM00382	ATPases associated with a variety of cellular activities
AFL94_11130	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AFL94_11135	SM00271	DnaJ molecular chaperone homology domain
AFL94_11155	SM00893	Electron transfer flavoprotein domain
AFL94_11160	SM00893	Electron transfer flavoprotein domain
AFL94_11165	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AFL94_11215	SM00341	Helicase and RNase D C-terminal
AFL94_11245	SM00479	AFL94_11245
AFL94_11250	SM00382	ATPases associated with a variety of cellular activities
AFL94_11250	SM00930	AFL94_11250
AFL94_11275	SM01004	Delta-aminolevulinic acid dehydratase
AFL94_11325	SM00955	AFL94_11325
AFL94_11330	SM00487	DEAD-like helicases superfamily
AFL94_11330	SM00490	helicase superfamily c-terminal domain
AFL94_11340	SM00481	DNA polymerase alpha chain like domain
AFL94_11345	SM01011	Aminopeptidase P, N-terminal domain
AFL94_11355	SM00924	MgtE intracellular N domain
AFL94_11395	SM00382	ATPases associated with a variety of cellular activities
AFL94_11400	SM00062	Bacterial periplasmic substrate-binding proteins
AFL94_11455	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_11465	SM00838	Elongation factor G C-terminus
AFL94_11475	SM00450	Rhodanese Homology Domain
AFL94_11530	SM00477	DNA/RNA non-specific endonuclease
AFL94_11530	SM00892	DNA/RNA non-specific endonuclease
AFL94_11555	SM00226	Low molecular weight phosphatase family
AFL94_11565	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_11630	SM00363	S4 RNA-binding domain
AFL94_11650	SM00855	Phosphoglycerate mutase family
AFL94_11730	SM00344	helix_turn_helix ASNC type
AFL94_11750	SM00858	AFL94_11750
AFL94_11780	SM01240	AFL94_11780
AFL94_11790	SM00507	HNH nucleases
AFL94_11805	SM00116	Domain in cystathionine beta-synthase and other proteins.
AFL94_11805	SM01240	AFL94_11805
AFL94_11830	SM00883	Chaperonin 10 Kd subunit
AFL94_11875	SM01005	Alanine racemase, C-terminal domain
AFL94_11925	SM00984	UDP binding domain
AFL94_11960	SM00662	RNA polymerases D
AFL94_11975	SM00316	Ribosomal protein S1-like RNA-binding domain
AFL94_12030	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AFL94_12035	SM01374	AFL94_12035
AFL94_12050	SM00342	helix_turn_helix, arabinose operon control protein
AFL94_12075	SM00322	K homology RNA-binding domain
AFL94_12090	SM01382	AFL94_12090
AFL94_12090	SM01383	AFL94_12090
AFL94_12110	SM01403	AFL94_12110
AFL94_12125	SM00838	Elongation factor G C-terminus
AFL94_12125	SM00889	Elongation factor G, domain IV
AFL94_12145	SM00663	RNA polymerase I subunit A N-terminus
AFL94_12180	SM00649	Ribosomal protein L11/L12
AFL94_12185	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AFL94_12205	SM00421	helix_turn_helix, Lux Regulon
AFL94_12205	SM00448	cheY-homologous receiver domain
AFL94_12250	SM00862	Transcriptional regulatory protein, C terminal
AFL94_12265	SM00855	Phosphoglycerate mutase family
AFL94_12290	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AFL94_12335	SM00954	Region found in RelA / SpoT proteins
AFL94_12355	SM00487	DEAD-like helicases superfamily
AFL94_12355	SM00490	helicase superfamily c-terminal domain
AFL94_12440	SM00062	Bacterial periplasmic substrate-binding proteins
AFL94_12450	SM00382	ATPases associated with a variety of cellular activities
AFL94_12465	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AFL94_12485	SM00861	Transketolase, pyrimidine binding domain
AFL94_12495	SM00344	helix_turn_helix ASNC type
AFL94_12535	SM00382	ATPases associated with a variety of cellular activities
AFL94_12540	SM00062	Bacterial periplasmic substrate-binding proteins
AFL94_12540	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AFL94_12605	SM00090	RIO-like kinase
AFL94_12615	SM00421	helix_turn_helix, Lux Regulon
AFL94_12685	SM00855	Phosphoglycerate mutase family
AFL94_12695	SM00881	CoA binding domain
AFL94_12715	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AFL94_12720	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_12760	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AFL94_12760	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AFL94_12760	SM00493	AFL94_12760
AFL94_12765	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_12780	SM00450	Rhodanese Homology Domain
AFL94_12790	SM00487	DEAD-like helicases superfamily
AFL94_12790	SM00490	helicase superfamily c-terminal domain
AFL94_12830	SM00482	DNA polymerase A domain
AFL94_12840	SM00478	endonuclease III
AFL94_12840	SM00525	AFL94_12840
AFL94_12865	SM00100	Cyclic nucleotide-monophosphate binding domain
AFL94_12865	SM00419	helix_turn_helix, cAMP Regulatory protein
AFL94_12890	SM00382	ATPases associated with a variety of cellular activities
AFL94_12895	SM00382	ATPases associated with a variety of cellular activities
AFL94_12905	SM01209	AFL94_12905
AFL94_12905	SM01210	AFL94_12905
AFL94_12965	SM00382	ATPases associated with a variety of cellular activities
AFL94_12965	SM01086	C-terminal, D2-small domain, of ClpB protein
AFL94_12995	SM00422	helix_turn_helix, mercury resistance
AFL94_13000	SM00271	DnaJ molecular chaperone homology domain
AFL94_13025	SM00487	DEAD-like helicases superfamily
AFL94_13025	SM00490	helicase superfamily c-terminal domain
AFL94_13035	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_13045	SM00226	Low molecular weight phosphatase family
AFL94_13060	SM00155	Phospholipase D. Active site motifs.
AFL94_13070	SM00382	ATPases associated with a variety of cellular activities
AFL94_13155	SM00062	Bacterial periplasmic substrate-binding proteins
AFL94_13165	SM00382	ATPases associated with a variety of cellular activities
AFL94_13220	SM00411	bacterial (prokaryotic) histone like domain
AFL94_13225	SM00411	bacterial (prokaryotic) histone like domain
AFL94_13255	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_13270	SM00382	ATPases associated with a variety of cellular activities
AFL94_13285	SM00344	helix_turn_helix ASNC type
AFL94_13305	SM00822	AFL94_13305
AFL94_13345	SM00704	CDGSH-type zinc finger. Function unknown.
AFL94_13350	SM01236	AFL94_13350
AFL94_13400	SM00342	helix_turn_helix, arabinose operon control protein
AFL94_13460	SM00924	MgtE intracellular N domain
AFL94_13525	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_13530	SM00382	ATPases associated with a variety of cellular activities
AFL94_13535	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_13540	SM00382	ATPases associated with a variety of cellular activities
AFL94_13555	SM00849	Metallo-beta-lactamase superfamily
AFL94_13570	SM00382	ATPases associated with a variety of cellular activities
AFL94_13625	SM00487	DEAD-like helicases superfamily
AFL94_13625	SM00490	helicase superfamily c-terminal domain
AFL94_13625	SM00847	Helicase associated domain (HA2)  Add an annotation
AFL94_13645	SM00752	Horizontally Transferred TransMembrane Domain
AFL94_13660	SM00421	helix_turn_helix, Lux Regulon
AFL94_13665	SM00287	Bacterial SH3 domain homologues
AFL94_13675	SM00316	Ribosomal protein S1-like RNA-binding domain
AFL94_13675	SM00732	Likely ribonuclease with RNase H fold.
AFL94_13685	SM00363	S4 RNA-binding domain
AFL94_13720	SM00357	Cold shock protein domain
AFL94_13740	SM00344	helix_turn_helix ASNC type
AFL94_13765	SM00382	ATPases associated with a variety of cellular activities
AFL94_13770	SM00382	ATPases associated with a variety of cellular activities
AFL94_13790	SM00387	Histidine kinase-like ATPases
AFL94_13795	SM00421	helix_turn_helix, Lux Regulon
AFL94_13795	SM00448	cheY-homologous receiver domain
AFL94_13800	SM00382	ATPases associated with a variety of cellular activities
AFL94_13820	SM00849	Metallo-beta-lactamase superfamily
AFL94_13830	SM00422	helix_turn_helix, mercury resistance
AFL94_13870	SM00344	helix_turn_helix ASNC type
AFL94_13960	SM00822	AFL94_13960
AFL94_14005	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_14070	SM00382	ATPases associated with a variety of cellular activities
AFL94_14075	SM00354	helix_turn _helix lactose operon repressor
AFL94_14080	SM00529	Helix-turn-helix diphteria tox regulatory element
AFL94_14080	SM00899	AFL94_14080
AFL94_14090	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_14090	SM00866	AFL94_14090
AFL94_14100	SM00062	Bacterial periplasmic substrate-binding proteins
AFL94_14105	SM00382	ATPases associated with a variety of cellular activities
AFL94_14120	SM00382	ATPases associated with a variety of cellular activities
AFL94_14130	SM00287	Bacterial SH3 domain homologues
AFL94_14150	SM00422	helix_turn_helix, mercury resistance
AFL94_14160	SM00344	helix_turn_helix ASNC type
AFL94_14170	SM00226	Low molecular weight phosphatase family
AFL94_14225	SM00344	helix_turn_helix ASNC type
AFL94_14255	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_14280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_14280	SM00895	AFL94_14280
AFL94_14315	SM00867	YceI-like domain 
AFL94_14330	SM00382	ATPases associated with a variety of cellular activities
AFL94_14370	SM00919	Malic enzyme, NAD binding domain
AFL94_14370	SM01274	AFL94_14370
AFL94_14395	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_14510	SM00382	ATPases associated with a variety of cellular activities
AFL94_14535	SM00344	helix_turn_helix ASNC type
AFL94_14590	SM01119	AFL94_14590
AFL94_14595	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_14605	SM00882	Coenzyme A transferase
AFL94_14610	SM00882	Coenzyme A transferase
AFL94_14620	SM00855	Phosphoglycerate mutase family
AFL94_14650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_14650	SM00895	AFL94_14650
AFL94_14700	SM00861	Transketolase, pyrimidine binding domain
AFL94_14740	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AFL94_14765	SM00862	Transcriptional regulatory protein, C terminal
AFL94_14775	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_14775	SM00895	AFL94_14775
AFL94_14790	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AFL94_14795	SM01092	CO dehydrogenase flavoprotein C-terminal domain
AFL94_14840	SM00421	helix_turn_helix, Lux Regulon
AFL94_14840	SM00448	cheY-homologous receiver domain
AFL94_14855	SM00382	ATPases associated with a variety of cellular activities
AFL94_14870	SM00421	helix_turn_helix, Lux Regulon
AFL94_14875	SM01011	Aminopeptidase P, N-terminal domain
AFL94_15050	SM00421	helix_turn_helix, Lux Regulon
AFL94_15050	SM00448	cheY-homologous receiver domain
AFL94_15080	SM00382	ATPases associated with a variety of cellular activities
AFL94_15090	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_15155	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_15230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_15230	SM00895	AFL94_15230
AFL94_15240	SM00849	Metallo-beta-lactamase superfamily
AFL94_15275	SM00382	ATPases associated with a variety of cellular activities
AFL94_15305	SM00893	Electron transfer flavoprotein domain
AFL94_15310	SM00893	Electron transfer flavoprotein domain
AFL94_15420	SM00881	CoA binding domain
AFL94_15430	SM00382	ATPases associated with a variety of cellular activities
AFL94_15435	SM00382	ATPases associated with a variety of cellular activities
AFL94_15535	SM00959	Rho termination factor, N-terminal domain
AFL94_15555	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
AFL94_15740	SM00382	ATPases associated with a variety of cellular activities
AFL94_15760	SM00631	AFL94_15760
AFL94_15790	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_15855	SM00116	Domain in cystathionine beta-synthase and other proteins.
AFL94_15860	SM00116	Domain in cystathionine beta-synthase and other proteins.
AFL94_15860	SM01091	Transporter associated domain
AFL94_15885	SM00448	cheY-homologous receiver domain
AFL94_15885	SM00862	Transcriptional regulatory protein, C terminal
AFL94_15890	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AFL94_15890	SM00387	Histidine kinase-like ATPases
AFL94_15890	SM00388	His Kinase A (phosphoacceptor) domain
AFL94_15910	SM01022	AFL94_15910
AFL94_16000	SM00382	ATPases associated with a variety of cellular activities
AFL94_16005	SM00564	beta-propeller repeat
AFL94_16025	SM00382	ATPases associated with a variety of cellular activities
AFL94_16050	SM00878	Biotin carboxylase C-terminal domain
AFL94_16125	SM00052	Putative diguanylate phosphodiesterase
AFL94_16195	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_16195	SM00895	AFL94_16195
AFL94_16230	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_16250	SM01130	AFL94_16250
AFL94_16255	SM00382	ATPases associated with a variety of cellular activities
AFL94_16260	SM00382	ATPases associated with a variety of cellular activities
AFL94_16275	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_16275	SM00895	AFL94_16275
AFL94_16280	SM00893	Electron transfer flavoprotein domain
AFL94_16285	SM00893	Electron transfer flavoprotein domain
AFL94_16305	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_16315	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AFL94_16325	SM00903	Flavin reductase like domain
AFL94_16350	SM00893	Electron transfer flavoprotein domain
AFL94_16355	SM00893	Electron transfer flavoprotein domain
AFL94_16375	SM00882	Coenzyme A transferase
AFL94_16380	SM00882	Coenzyme A transferase
AFL94_16400	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_16455	SM00882	Coenzyme A transferase
AFL94_16460	SM00882	Coenzyme A transferase
AFL94_16470	SM00822	AFL94_16470
AFL94_16500	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_16515	SM00857	Resolvase, N terminal domain
AFL94_16585	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_16590	SM00903	Flavin reductase like domain
AFL94_16625	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_16640	SM00822	AFL94_16640
AFL94_16730	SM00822	AFL94_16730
AFL94_16740	SM00530	Helix-turn-helix XRE-family like proteins 
AFL94_16830	SM00354	helix_turn _helix lactose operon repressor
AFL94_16850	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AFL94_16850	SM00866	AFL94_16850
AFL94_16860	SM00354	helix_turn _helix lactose operon repressor
AFL94_16875	SM00382	ATPases associated with a variety of cellular activities
AFL94_16880	SM00354	helix_turn _helix lactose operon repressor
AFL94_16920	SM00382	ATPases associated with a variety of cellular activities
AFL94_16935	SM00346	helix_turn_helix isocitrate lyase regulation
AFL94_16940	SM00919	Malic enzyme, NAD binding domain
AFL94_16940	SM01274	AFL94_16940
AFL94_16965	SM00248	ankyrin repeats
AFL94_17025	SM00382	ATPases associated with a variety of cellular activities
AFL94_17095	SM00226	Low molecular weight phosphatase family
AFL94_17105	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AFL94_17145	SM00822	AFL94_17145
AFL94_17200	SM00829	Enoylreductase
AFL94_17245	SM00347	helix_turn_helix multiple antibiotic resistance protein
AFL94_17280	SM00357	Cold shock protein domain
AFL94_17330	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AFL94_17335	SM00857	Resolvase, N terminal domain
AFL94_17455	SM00421	helix_turn_helix, Lux Regulon
AFL94_17455	SM00448	cheY-homologous receiver domain
AFL94_17470	SM00382	ATPases associated with a variety of cellular activities
AFL94_17540	SM01130	AFL94_17540
AFL94_17555	SM00382	ATPases associated with a variety of cellular activities
AFL94_17600	SM00342	helix_turn_helix, arabinose operon control protein
AFL94_17685	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AFL94_17720	SM00470	ParB-like nuclease domain
AFL94_17735	SM00393	Putative single-stranded nucleic acids-binding domain
AFL94_17745	SM01234	AFL94_17745
