locus-tag class description NtRootD5_00010 PF00308 Bacterial dnaA protein NtRootD5_00010 PF08299 Bacterial dnaA protein helix-turn-helix NtRootD5_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain NtRootD5_00020 PF02767 DNA polymerase III beta subunit, central domain NtRootD5_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain NtRootD5_00030 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NtRootD5_00030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NtRootD5_00040 PF02463 RecF/RecN/SMC N terminal domain NtRootD5_00050 PF05258 Dna[CI] antecedent, DciA NtRootD5_00060 PF00204 DNA gyrase B NtRootD5_00060 PF00986 DNA gyrase B subunit, carboxyl terminus NtRootD5_00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_00060 PF01751 Toprim domain NtRootD5_00070 PF00521 DNA gyrase/topoisomerase IV, subunit A NtRootD5_00070 PF03989 DNA gyrase C-terminal domain, beta-propeller NtRootD5_00090 PF12089 Transmembrane domain of unknown function (DUF3566) NtRootD5_00130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NtRootD5_00140 PF01694 Rhomboid family NtRootD5_00160 PF03352 Methyladenine glycosylase NtRootD5_00180 PF02805 Metal binding domain of Ada NtRootD5_00180 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NtRootD5_00180 PF12833 Helix-turn-helix domain NtRootD5_00180 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NtRootD5_00190 PF04542 Sigma-70 region 2 NtRootD5_00190 PF04545 Sigma-70, region 4 NtRootD5_00200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NtRootD5_00200 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NtRootD5_00210 PF06781 Cell division protein CrgA NtRootD5_00220 PF04203 Sortase domain NtRootD5_00230 PF00117 Glutamine amidotransferase class-I NtRootD5_00240 PF03793 PASTA domain NtRootD5_00240 PF00069 Protein kinase domain NtRootD5_00250 PF00069 Protein kinase domain NtRootD5_00260 PF00905 Penicillin binding protein transpeptidase domain NtRootD5_00270 PF01098 Cell cycle protein NtRootD5_00290 PF16697 Inner membrane component of T3SS, cytoplasmic domain NtRootD5_00300 PF12401 Protein of unknown function (DUF2662) NtRootD5_00300 PF00498 FHA domain NtRootD5_00310 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_00310 PF07729 FCD domain NtRootD5_00320 PF13378 Enolase C-terminal domain-like NtRootD5_00320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NtRootD5_00340 PF12146 Serine aminopeptidase, S33 NtRootD5_00350 PF01425 Amidase NtRootD5_00390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NtRootD5_00390 PF02770 Acyl-CoA dehydrogenase, middle domain NtRootD5_00390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NtRootD5_00420 PF07690 Major Facilitator Superfamily NtRootD5_00430 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NtRootD5_00460 PF01593 Flavin containing amine oxidoreductase NtRootD5_00470 PF00582 Universal stress protein family NtRootD5_00500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NtRootD5_00530 PF07729 FCD domain NtRootD5_00530 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_00540 PF03746 LamB/YcsF family NtRootD5_00550 PF07690 Major Facilitator Superfamily NtRootD5_00550 PF00083 Sugar (and other) transporter NtRootD5_00560 PF02682 Carboxyltransferase domain, subdomain C and D NtRootD5_00570 PF02785 Biotin carboxylase C-terminal domain NtRootD5_00570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NtRootD5_00570 PF00364 Biotin-requiring enzyme NtRootD5_00570 PF00289 Biotin carboxylase, N-terminal domain NtRootD5_00580 PF00480 ROK family NtRootD5_00590 PF13416 Bacterial extracellular solute-binding protein NtRootD5_00610 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_00610 PF14785 Maltose transport system permease protein MalF P2 domain NtRootD5_00620 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_00640 PF00480 ROK family NtRootD5_00650 PF16385 Domain of unknown function NtRootD5_00650 PF00884 Sulfatase NtRootD5_00670 PF03932 CutC family NtRootD5_00680 PF01565 FAD binding domain NtRootD5_00680 PF04030 D-arabinono-1,4-lactone oxidase NtRootD5_00690 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_00700 PF01638 HxlR-like helix-turn-helix NtRootD5_00720 PF01758 Sodium Bile acid symporter family NtRootD5_00730 PF00916 Sulfate permease family NtRootD5_00730 PF01740 STAS domain NtRootD5_00760 PF00294 pfkB family carbohydrate kinase NtRootD5_00770 PF13409 Glutathione S-transferase, N-terminal domain NtRootD5_00820 PF03009 Glycerophosphoryl diester phosphodiesterase family NtRootD5_00830 PF02837 Glycosyl hydrolases family 2, sugar binding domain NtRootD5_00830 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NtRootD5_00830 PF00703 Glycosyl hydrolases family 2 NtRootD5_00830 PF16353 Domain of unknown function(DUF4981) NtRootD5_00830 PF02929 Beta galactosidase small chain NtRootD5_00840 PF01842 ACT domain NtRootD5_00840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_00840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NtRootD5_00850 PF02595 Glycerate kinase family NtRootD5_00860 PF10944 Protein of unknown function (DUF2630) NtRootD5_00950 PF04294 VanW like protein NtRootD5_00980 PF02586 SOS response associated peptidase (SRAP) NtRootD5_01010 PF01965 DJ-1/PfpI family NtRootD5_01030 PF00005 ABC transporter NtRootD5_01050 PF00072 Response regulator receiver domain NtRootD5_01050 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_01060 PF07730 Histidine kinase NtRootD5_01060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_01090 PF00860 Permease family NtRootD5_01110 PF00881 Nitroreductase family NtRootD5_01130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NtRootD5_01130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NtRootD5_01130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NtRootD5_01130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NtRootD5_01150 PF00854 POT family NtRootD5_01160 PF01425 Amidase NtRootD5_01170 PF03575 Peptidase family S51 NtRootD5_01180 PF00581 Rhodanese-like domain NtRootD5_01180 PF01206 Sulfurtransferase TusA NtRootD5_01190 PF00800 Prephenate dehydratase NtRootD5_01190 PF01842 ACT domain NtRootD5_01210 PF00781 Diacylglycerol kinase catalytic domain NtRootD5_01220 PF02403 Seryl-tRNA synthetase N-terminal domain NtRootD5_01220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NtRootD5_01230 PF13649 Methyltransferase domain NtRootD5_01240 PF13538 UvrD-like helicase C-terminal domain NtRootD5_01270 PF04545 Sigma-70, region 4 NtRootD5_01270 PF04539 Sigma-70 region 3 NtRootD5_01270 PF04542 Sigma-70 region 2 NtRootD5_01380 PF00719 Inorganic pyrophosphatase NtRootD5_01390 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NtRootD5_01410 PF01171 PP-loop family NtRootD5_01410 PF09179 TilS substrate binding domain NtRootD5_01420 PF00156 Phosphoribosyl transferase domain NtRootD5_01440 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_01440 PF17862 AAA+ lid domain NtRootD5_01440 PF01434 Peptidase family M41 NtRootD5_01450 PF01227 GTP cyclohydrolase I NtRootD5_01460 PF00809 Pterin binding enzyme NtRootD5_01470 PF02152 Dihydroneopterin aldolase NtRootD5_01480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NtRootD5_01530 PF02569 Pantoate-beta-alanine ligase NtRootD5_01550 PF07690 Major Facilitator Superfamily NtRootD5_01600 PF01336 OB-fold nucleic acid binding domain NtRootD5_01600 PF00152 tRNA synthetases class II (D, K and N) NtRootD5_01620 PF11774 Lsr2 NtRootD5_01630 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_01630 PF07724 AAA domain (Cdc48 subfamily) NtRootD5_01630 PF17871 AAA lid domain NtRootD5_01630 PF02861 Clp amino terminal domain, pathogenicity island component NtRootD5_01630 PF10431 C-terminal, D2-small domain, of ClpB protein NtRootD5_01640 PF03033 Glycosyltransferase family 28 N-terminal domain NtRootD5_01650 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NtRootD5_01650 PF07676 WD40-like Beta Propeller Repeat NtRootD5_01650 PF00326 Prolyl oligopeptidase family NtRootD5_01660 PF00583 Acetyltransferase (GNAT) family NtRootD5_01670 PF01565 FAD binding domain NtRootD5_01670 PF08031 Berberine and berberine like NtRootD5_01690 PF02733 Dak1 domain NtRootD5_01700 PF02734 DAK2 domain NtRootD5_01710 PF03610 PTS system fructose IIA component NtRootD5_01770 PF03861 ANTAR domain NtRootD5_01770 PF08376 Nitrate and nitrite sensing NtRootD5_01790 PF00375 Sodium:dicarboxylate symporter family NtRootD5_01810 PF00730 HhH-GPD superfamily base excision DNA repair protein NtRootD5_01810 PF00633 Helix-hairpin-helix motif NtRootD5_01830 PF02457 DisA bacterial checkpoint controller nucleotide-binding NtRootD5_01830 PF10635 DisA bacterial checkpoint controller linker region NtRootD5_01830 PF00633 Helix-hairpin-helix motif NtRootD5_01850 PF18073 Rubredoxin metal binding domain NtRootD5_01860 PF01569 PAP2 superfamily NtRootD5_01880 PF12849 PBP superfamily domain NtRootD5_01890 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_01900 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_01910 PF00005 ABC transporter NtRootD5_01960 PF01384 Phosphate transporter family NtRootD5_02010 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NtRootD5_02030 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_02040 PF14031 Putative serine dehydratase domain NtRootD5_02070 PF00547 Urease, gamma subunit NtRootD5_02080 PF00699 Urease beta subunit NtRootD5_02090 PF01979 Amidohydrolase family NtRootD5_02090 PF00449 Urease alpha-subunit, N-terminal domain NtRootD5_02100 PF05194 UreE urease accessory protein, C-terminal domain NtRootD5_02100 PF02814 UreE urease accessory protein, N-terminal domain NtRootD5_02110 PF01730 UreF NtRootD5_02120 PF02492 CobW/HypB/UreG, nucleotide-binding domain NtRootD5_02130 PF01774 UreD urease accessory protein NtRootD5_02140 PF03824 High-affinity nickel-transport protein NtRootD5_02180 PF00583 Acetyltransferase (GNAT) family NtRootD5_02190 PF00128 Alpha amylase, catalytic domain NtRootD5_02190 PF03714 Bacterial pullanase-associated domain NtRootD5_02190 PF02806 Alpha amylase, C-terminal all-beta domain NtRootD5_02230 PF10282 Lactonase, 7-bladed beta-propeller NtRootD5_02240 PF00248 Aldo/keto reductase family NtRootD5_02260 PF00248 Aldo/keto reductase family NtRootD5_02270 PF00248 Aldo/keto reductase family NtRootD5_02290 PF13936 Helix-turn-helix domain NtRootD5_02290 PF00665 Integrase core domain NtRootD5_02300 PF07311 Dodecin NtRootD5_02340 PF02796 Helix-turn-helix domain of resolvase NtRootD5_02340 PF00239 Resolvase, N terminal domain NtRootD5_02350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_02350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NtRootD5_02350 PF00205 Thiamine pyrophosphate enzyme, central domain NtRootD5_02360 PF04199 Putative cyclase NtRootD5_02370 PF01593 Flavin containing amine oxidoreductase NtRootD5_02380 PF01613 Flavin reductase like domain NtRootD5_02420 PF14525 AraC-binding-like domain NtRootD5_02420 PF12833 Helix-turn-helix domain NtRootD5_02430 PF07729 FCD domain NtRootD5_02430 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_02440 PF00561 alpha/beta hydrolase fold NtRootD5_02460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NtRootD5_02460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NtRootD5_02470 PF02447 GntP family permease NtRootD5_02480 PF01116 Fructose-bisphosphate aldolase class-II NtRootD5_02580 PF00282 Pyridoxal-dependent decarboxylase conserved domain NtRootD5_02590 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NtRootD5_02610 PF06276 Ferric iron reductase FhuF-like transporter NtRootD5_02610 PF04183 IucA / IucC family NtRootD5_02650 PF00005 ABC transporter NtRootD5_02680 PF00535 Glycosyl transferase family 2 NtRootD5_02700 PF00398 Ribosomal RNA adenine dimethylase NtRootD5_02710 PF00202 Aminotransferase class-III NtRootD5_02780 PF00583 Acetyltransferase (GNAT) family NtRootD5_02810 PF00892 EamA-like transporter family NtRootD5_02820 PF00155 Aminotransferase class I and II NtRootD5_02820 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_02830 PF07729 FCD domain NtRootD5_02830 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_02840 PF13416 Bacterial extracellular solute-binding protein NtRootD5_02850 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_02860 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_02870 PF13378 Enolase C-terminal domain-like NtRootD5_02870 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NtRootD5_02880 PF00171 Aldehyde dehydrogenase family NtRootD5_02900 PF00083 Sugar (and other) transporter NtRootD5_02910 PF13649 Methyltransferase domain NtRootD5_02910 PF17827 PrmC N-terminal domain NtRootD5_02940 PF04679 ATP dependent DNA ligase C terminal region NtRootD5_02940 PF13298 DNA polymerase Ligase (LigD) NtRootD5_02940 PF01068 ATP dependent DNA ligase domain NtRootD5_02950 PF02735 Ku70/Ku80 beta-barrel domain NtRootD5_02960 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_02970 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_03000 PF07729 FCD domain NtRootD5_03000 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_03050 PF00210 Ferritin-like domain NtRootD5_03080 PF13977 BetI-type transcriptional repressor, C-terminal NtRootD5_03080 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_03100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NtRootD5_03100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NtRootD5_03110 PF00294 pfkB family carbohydrate kinase NtRootD5_03120 PF00455 DeoR C terminal sensor domain NtRootD5_03120 PF08220 DeoR-like helix-turn-helix domain NtRootD5_03170 PF04107 Glutamate-cysteine ligase family 2(GCS2) NtRootD5_03210 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_03220 PF13419 Haloacid dehalogenase-like hydrolase NtRootD5_03230 PF03633 Glycosyl hydrolase family 65, C-terminal domain NtRootD5_03230 PF03632 Glycosyl hydrolase family 65 central catalytic domain NtRootD5_03230 PF03636 Glycosyl hydrolase family 65, N-terminal domain NtRootD5_03270 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NtRootD5_03270 PF01409 tRNA synthetases class II core domain (F) NtRootD5_03290 PF01047 MarR family NtRootD5_03300 PF01040 UbiA prenyltransferase family NtRootD5_03320 PF01593 Flavin containing amine oxidoreductase NtRootD5_03340 PF00348 Polyprenyl synthetase NtRootD5_03350 PF00293 NUDIX domain NtRootD5_03420 PF00920 Dehydratase family NtRootD5_03440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_03440 PF03466 LysR substrate binding domain NtRootD5_03450 PF00892 EamA-like transporter family NtRootD5_03460 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_03470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_03470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_03480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_03480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_03490 PF01261 Xylose isomerase-like TIM barrel NtRootD5_03500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_03500 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_03510 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_03550 PF03746 LamB/YcsF family NtRootD5_03560 PF02626 Carboxyltransferase domain, subdomain A and B NtRootD5_03580 PF04286 Protein of unknown function (DUF445) NtRootD5_03590 PF03009 Glycerophosphoryl diester phosphodiesterase family NtRootD5_03650 PF01910 Thiamine-binding protein NtRootD5_03660 PF01596 O-methyltransferase NtRootD5_03670 PF00583 Acetyltransferase (GNAT) family NtRootD5_03700 PF00664 ABC transporter transmembrane region NtRootD5_03700 PF00005 ABC transporter NtRootD5_03710 PF00005 ABC transporter NtRootD5_03710 PF00664 ABC transporter transmembrane region NtRootD5_03720 PF12833 Helix-turn-helix domain NtRootD5_03720 PF02311 AraC-like ligand binding domain NtRootD5_03760 PF01032 FecCD transport family NtRootD5_03770 PF01032 FecCD transport family NtRootD5_03780 PF00005 ABC transporter NtRootD5_03790 PF00665 Integrase core domain NtRootD5_03790 PF13936 Helix-turn-helix domain NtRootD5_03810 PF00083 Sugar (and other) transporter NtRootD5_03830 PF13936 Helix-turn-helix domain NtRootD5_03830 PF00665 Integrase core domain NtRootD5_03850 PF00324 Amino acid permease NtRootD5_03890 PF01175 Urocanase Rossmann-like domain NtRootD5_03890 PF17392 Urocanase C-terminal domain NtRootD5_03890 PF17391 Urocanase N-terminal domain NtRootD5_03900 PF00221 Aromatic amino acid lyase NtRootD5_03930 PF00665 Integrase core domain NtRootD5_03930 PF13936 Helix-turn-helix domain NtRootD5_03950 PF00491 Arginase family NtRootD5_03960 PF00860 Permease family NtRootD5_04010 PF00582 Universal stress protein family NtRootD5_04020 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NtRootD5_04020 PF00391 PEP-utilising enzyme, mobile domain NtRootD5_04030 PF01545 Cation efflux family NtRootD5_04030 PF16916 Dimerisation domain of Zinc Transporter NtRootD5_04050 PF00294 pfkB family carbohydrate kinase NtRootD5_04220 PF01545 Cation efflux family NtRootD5_04240 PF01022 Bacterial regulatory protein, arsR family NtRootD5_04270 PF01547 Bacterial extracellular solute-binding protein NtRootD5_04280 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_04290 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_04310 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_04350 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_04350 PF00072 Response regulator receiver domain NtRootD5_04360 PF07730 Histidine kinase NtRootD5_04380 PF12796 Ankyrin repeats (3 copies) NtRootD5_04390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NtRootD5_04390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NtRootD5_04400 PF01144 Coenzyme A transferase NtRootD5_04410 PF01144 Coenzyme A transferase NtRootD5_04460 PF02469 Fasciclin domain NtRootD5_04480 PF02028 BCCT, betaine/carnitine/choline family transporter NtRootD5_04490 PF09339 IclR helix-turn-helix domain NtRootD5_04490 PF01614 Bacterial transcriptional regulator NtRootD5_04500 PF02634 FdhD/NarQ family NtRootD5_04510 PF00994 Probable molybdopterin binding domain NtRootD5_04510 PF03454 MoeA C-terminal region (domain IV) NtRootD5_04510 PF03453 MoeA N-terminal region (domain I and II) NtRootD5_04520 PF00107 Zinc-binding dehydrogenase NtRootD5_04520 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_04530 PF01568 Molydopterin dinucleotide binding domain NtRootD5_04530 PF00384 Molybdopterin oxidoreductase NtRootD5_04540 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NtRootD5_04540 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NtRootD5_04550 PF04961 Formiminotransferase-cyclodeaminase NtRootD5_04560 PF01266 FAD dependent oxidoreductase NtRootD5_04560 PF16350 FAD dependent oxidoreductase central domain NtRootD5_04560 PF01571 Aminomethyltransferase folate-binding domain NtRootD5_04560 PF08669 Glycine cleavage T-protein C-terminal barrel domain NtRootD5_04570 PF00551 Formyl transferase NtRootD5_04580 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_04580 PF07729 FCD domain NtRootD5_04590 PF01680 SOR/SNZ family NtRootD5_04610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_04610 PF03466 LysR substrate binding domain NtRootD5_04620 PF00355 Rieske [2Fe-2S] domain NtRootD5_04620 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NtRootD5_04630 PF00970 Oxidoreductase FAD-binding domain NtRootD5_04630 PF00111 2Fe-2S iron-sulfur cluster binding domain NtRootD5_04630 PF00175 Oxidoreductase NAD-binding domain NtRootD5_04640 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_04640 PF00072 Response regulator receiver domain NtRootD5_04650 PF01380 SIS domain NtRootD5_04660 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NtRootD5_04690 PF03441 FAD binding domain of DNA photolyase NtRootD5_04690 PF00875 DNA photolyase NtRootD5_04710 PF00171 Aldehyde dehydrogenase family NtRootD5_04720 PF00378 Enoyl-CoA hydratase/isomerase NtRootD5_04730 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NtRootD5_04730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NtRootD5_04740 PF00378 Enoyl-CoA hydratase/isomerase NtRootD5_04780 PF00501 AMP-binding enzyme NtRootD5_04780 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_04790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NtRootD5_04790 PF02770 Acyl-CoA dehydrogenase, middle domain NtRootD5_04790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NtRootD5_04810 PF05199 GMC oxidoreductase NtRootD5_04810 PF00732 GMC oxidoreductase NtRootD5_04820 PF00171 Aldehyde dehydrogenase family NtRootD5_04860 PF00376 MerR family regulatory protein NtRootD5_04860 PF09278 MerR, DNA binding NtRootD5_04870 PF03551 Transcriptional regulator PadR-like family NtRootD5_04890 PF02540 NAD synthase NtRootD5_04900 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_04920 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_04930 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_04950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_04950 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_04970 PF02614 Glucuronate isomerase NtRootD5_04980 PF08125 Mannitol dehydrogenase C-terminal domain NtRootD5_04980 PF01232 Mannitol dehydrogenase Rossmann domain NtRootD5_04990 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NtRootD5_04990 PF13378 Enolase C-terminal domain-like NtRootD5_05000 PF01202 Shikimate kinase NtRootD5_05010 PF13407 Periplasmic binding protein domain NtRootD5_05020 PF00005 ABC transporter NtRootD5_05030 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_05040 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_05050 PF00156 Phosphoribosyl transferase domain NtRootD5_05080 PF13344 Haloacid dehalogenase-like hydrolase NtRootD5_05110 PF13936 Helix-turn-helix domain NtRootD5_05110 PF00665 Integrase core domain NtRootD5_05130 PF00665 Integrase core domain NtRootD5_05130 PF13936 Helix-turn-helix domain NtRootD5_05140 PF01116 Fructose-bisphosphate aldolase class-II NtRootD5_05160 PF00005 ABC transporter NtRootD5_05170 PF01032 FecCD transport family NtRootD5_05180 PF01032 FecCD transport family NtRootD5_05190 PF01497 Periplasmic binding protein NtRootD5_05260 PF00709 Adenylosuccinate synthetase NtRootD5_05270 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_05270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_05270 PF07689 KaiB domain NtRootD5_05290 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_05300 PF07690 Major Facilitator Superfamily NtRootD5_05310 PF08450 SMP-30/Gluconolactonase/LRE-like region NtRootD5_05330 PF00698 Acyl transferase domain NtRootD5_05330 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_05330 PF14765 Polyketide synthase dehydratase NtRootD5_05330 PF00550 Phosphopantetheine attachment site NtRootD5_05330 PF08659 KR domain NtRootD5_05330 PF02801 Beta-ketoacyl synthase, C-terminal domain NtRootD5_05330 PF00109 Beta-ketoacyl synthase, N-terminal domain NtRootD5_05330 PF16197 Ketoacyl-synthetase C-terminal extension NtRootD5_05330 PF00107 Zinc-binding dehydrogenase NtRootD5_05340 PF16326 ABC transporter C-terminal domain NtRootD5_05340 PF12848 ABC transporter NtRootD5_05340 PF00005 ABC transporter NtRootD5_05360 PF00561 alpha/beta hydrolase fold NtRootD5_05380 PF07690 Major Facilitator Superfamily NtRootD5_05380 PF00083 Sugar (and other) transporter NtRootD5_05390 PF00999 Sodium/hydrogen exchanger family NtRootD5_05390 PF03471 Transporter associated domain NtRootD5_05390 PF02080 TrkA-C domain NtRootD5_05400 PF02368 Bacterial Ig-like domain (group 2) NtRootD5_05400 PF11999 Protein of unknown function (DUF3494) NtRootD5_05430 PF07859 alpha/beta hydrolase fold NtRootD5_05450 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_05460 PF00497 Bacterial extracellular solute-binding proteins, family 3 NtRootD5_05470 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_05480 PF00005 ABC transporter NtRootD5_05490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_05490 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_05500 PF01266 FAD dependent oxidoreductase NtRootD5_05530 PF01594 AI-2E family transporter NtRootD5_05590 PF13380 CoA binding domain NtRootD5_05620 PF04237 YjbR NtRootD5_05630 PF01547 Bacterial extracellular solute-binding protein NtRootD5_05640 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_05650 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_05670 PF14525 AraC-binding-like domain NtRootD5_05670 PF12833 Helix-turn-helix domain NtRootD5_05700 PF01613 Flavin reductase like domain NtRootD5_05720 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal NtRootD5_05720 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal NtRootD5_05740 PF00795 Carbon-nitrogen hydrolase NtRootD5_05750 PF00083 Sugar (and other) transporter NtRootD5_05800 PF00437 Type II/IV secretion system protein NtRootD5_05800 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NtRootD5_05810 PF00990 Diguanylate cyclase, GGDEF domain NtRootD5_05810 PF17151 Periplasmic sensor domain NtRootD5_05830 PF00990 Diguanylate cyclase, GGDEF domain NtRootD5_05830 PF00563 EAL domain NtRootD5_05830 PF03707 Bacterial signalling protein N terminal repeat NtRootD5_05840 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NtRootD5_05840 PF02769 AIR synthase related protein, C-terminal domain NtRootD5_05840 PF00586 AIR synthase related protein, N-terminal domain NtRootD5_05890 PF05067 Manganese containing catalase NtRootD5_05900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_05910 PF13088 BNR repeat-like domain NtRootD5_05910 PF00754 F5/8 type C domain NtRootD5_05910 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase NtRootD5_05920 PF00082 Subtilase family NtRootD5_05920 PF02225 PA domain NtRootD5_05920 PF06280 Fn3-like domain NtRootD5_05920 PF00746 LPXTG cell wall anchor motif NtRootD5_05960 PF01047 MarR family NtRootD5_05980 PF13936 Helix-turn-helix domain NtRootD5_05980 PF00665 Integrase core domain NtRootD5_06000 PF06305 Lipopolysaccharide assembly protein A domain NtRootD5_06020 PF01915 Glycosyl hydrolase family 3 C-terminal domain NtRootD5_06020 PF00933 Glycosyl hydrolase family 3 N terminal domain NtRootD5_06020 PF14310 Fibronectin type III-like domain NtRootD5_06020 PF07691 PA14 domain NtRootD5_06070 PF04314 Copper chaperone PCu(A)C NtRootD5_06080 PF10518 TAT (twin-arginine translocation) pathway signal sequence NtRootD5_06080 PF04261 Dyp-type peroxidase family NtRootD5_06090 PF01842 ACT domain NtRootD5_06090 PF00696 Amino acid kinase family NtRootD5_06090 PF13840 ACT domain NtRootD5_06130 PF13662 Toprim domain NtRootD5_06130 PF02132 RecR protein NtRootD5_06140 PF12169 DNA polymerase III subunits gamma and tau domain III NtRootD5_06150 PF01784 NIF3 (NGG1p interacting factor 3) NtRootD5_06170 PF00171 Aldehyde dehydrogenase family NtRootD5_06190 PF07690 Major Facilitator Superfamily NtRootD5_06200 PF01047 MarR family NtRootD5_06260 PF01551 Peptidase family M23 NtRootD5_06260 PF01464 Transglycosylase SLT domain NtRootD5_06260 PF10145 Phage-related minor tail protein NtRootD5_06270 PF00255 Glutathione peroxidase NtRootD5_06280 PF00149 Calcineurin-like phosphoesterase NtRootD5_06290 PF11380 Stealth protein CR2, conserved region 2 NtRootD5_06290 PF17102 Stealth protein CR3, conserved region 3 NtRootD5_06290 PF17103 Stealth protein CR4, conserved region 4 NtRootD5_06290 PF17101 Stealth protein CR1, conserved region 1 NtRootD5_06340 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_06360 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_06370 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_06380 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NtRootD5_06400 PF13439 Glycosyltransferase Family 4 NtRootD5_06430 PF05048 Periplasmic copper-binding protein (NosD) NtRootD5_06430 PF18835 Beta helix repeat of Inulin fructotransferase NtRootD5_06440 PF00294 pfkB family carbohydrate kinase NtRootD5_06450 PF00251 Glycosyl hydrolases family 32 N-terminal domain NtRootD5_06450 PF08244 Glycosyl hydrolases family 32 C terminal NtRootD5_06460 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_06470 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_06480 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_06500 PF18835 Beta helix repeat of Inulin fructotransferase NtRootD5_06500 PF05048 Periplasmic copper-binding protein (NosD) NtRootD5_06510 PF00582 Universal stress protein family NtRootD5_06520 PF01970 Tripartite tricarboxylate transporter TctA family NtRootD5_06550 PF17203 Single cache domain 3 NtRootD5_06550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_06550 PF00989 PAS fold NtRootD5_06550 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NtRootD5_06560 PF00072 Response regulator receiver domain NtRootD5_06560 PF12431 Transcriptional regulator NtRootD5_06570 PF03928 Haem-degrading NtRootD5_06580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_06580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_06590 PF07676 WD40-like Beta Propeller Repeat NtRootD5_06610 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_06610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_06620 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_06620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_06640 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_06650 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_06680 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_06680 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_06690 PF01047 MarR family NtRootD5_06690 PF00480 ROK family NtRootD5_06710 PF01274 Malate synthase NtRootD5_06720 PF00463 Isocitrate lyase family NtRootD5_06730 PF01381 Helix-turn-helix NtRootD5_06780 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_06800 PF08543 Phosphomethylpyrimidine kinase NtRootD5_06820 PF08521 Two-component sensor kinase N-terminal NtRootD5_06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_06820 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_06830 PF00072 Response regulator receiver domain NtRootD5_06830 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_06840 PF00083 Sugar (and other) transporter NtRootD5_06860 PF01370 NAD dependent epimerase/dehydratase family NtRootD5_06860 PF08338 Domain of unknown function (DUF1731) NtRootD5_06870 PF17932 Tetracyclin repressor-like, C-terminal domain NtRootD5_06870 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_06900 PF01702 Queuine tRNA-ribosyltransferase NtRootD5_06970 PF00106 short chain dehydrogenase NtRootD5_06980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NtRootD5_06980 PF02770 Acyl-CoA dehydrogenase, middle domain NtRootD5_06980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NtRootD5_07040 PF00311 Phosphoenolpyruvate carboxylase NtRootD5_07060 PF09335 SNARE associated Golgi protein NtRootD5_07070 PF01661 Macro domain NtRootD5_07080 PF00849 RNA pseudouridylate synthase NtRootD5_07130 PF00155 Aminotransferase class I and II NtRootD5_07150 PF11606 Family 31 carbohydrate binding protein NtRootD5_07170 PF07238 PilZ domain NtRootD5_07170 PF03552 Cellulose synthase NtRootD5_07170 PF00535 Glycosyl transferase family 2 NtRootD5_07180 PF00722 Glycosyl hydrolases family 16 NtRootD5_07190 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NtRootD5_07190 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NtRootD5_07200 PF00271 Helicase conserved C-terminal domain NtRootD5_07200 PF08494 DEAD/H associated NtRootD5_07200 PF00270 DEAD/DEAH box helicase NtRootD5_07250 PF00999 Sodium/hydrogen exchanger family NtRootD5_07250 PF02254 TrkA-N domain NtRootD5_07250 PF02080 TrkA-C domain NtRootD5_07280 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_07280 PF00107 Zinc-binding dehydrogenase NtRootD5_07300 PF13439 Glycosyltransferase Family 4 NtRootD5_07300 PF00534 Glycosyl transferases group 1 NtRootD5_07330 PF14437 MafB19-like deaminase NtRootD5_07380 PF13419 Haloacid dehalogenase-like hydrolase NtRootD5_07420 PF00672 HAMP domain NtRootD5_07420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_07420 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_07430 PF00072 Response regulator receiver domain NtRootD5_07430 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_07440 PF00072 Response regulator receiver domain NtRootD5_07440 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_07460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_07460 PF03466 LysR substrate binding domain NtRootD5_07470 PF00892 EamA-like transporter family NtRootD5_07490 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_07490 PF08361 MAATS-type transcriptional repressor, C-terminal region NtRootD5_07520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NtRootD5_07520 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_07520 PF00403 Heavy-metal-associated domain NtRootD5_07530 PF00581 Rhodanese-like domain NtRootD5_07540 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase NtRootD5_07550 PF00480 ROK family NtRootD5_07560 PF00701 Dihydrodipicolinate synthetase family NtRootD5_07570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_07570 PF00005 ABC transporter NtRootD5_07580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_07580 PF00005 ABC transporter NtRootD5_07590 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_07600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NtRootD5_07620 PF17932 Tetracyclin repressor-like, C-terminal domain NtRootD5_07620 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_07630 PF07690 Major Facilitator Superfamily NtRootD5_07640 PF04199 Putative cyclase NtRootD5_07650 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_07660 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NtRootD5_07660 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NtRootD5_07670 PF00042 Globin NtRootD5_07670 PF00175 Oxidoreductase NAD-binding domain NtRootD5_07670 PF00970 Oxidoreductase FAD-binding domain NtRootD5_07720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NtRootD5_07720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NtRootD5_07720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NtRootD5_07720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NtRootD5_07730 PF16124 RecQ zinc-binding NtRootD5_07730 PF09382 RQC domain NtRootD5_07730 PF00271 Helicase conserved C-terminal domain NtRootD5_07730 PF00270 DEAD/DEAH box helicase NtRootD5_07730 PF00570 HRDC domain NtRootD5_07740 PF07690 Major Facilitator Superfamily NtRootD5_07750 PF00326 Prolyl oligopeptidase family NtRootD5_07750 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NtRootD5_07770 PF00324 Amino acid permease NtRootD5_07780 PF00149 Calcineurin-like phosphoesterase NtRootD5_07810 PF00698 Acyl transferase domain NtRootD5_07810 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_07810 PF16197 Ketoacyl-synthetase C-terminal extension NtRootD5_07810 PF00109 Beta-ketoacyl synthase, N-terminal domain NtRootD5_07810 PF02801 Beta-ketoacyl synthase, C-terminal domain NtRootD5_07810 PF08659 KR domain NtRootD5_07810 PF00550 Phosphopantetheine attachment site NtRootD5_07810 PF14765 Polyketide synthase dehydratase NtRootD5_07830 PF13722 5TM C-terminal transporter carbon starvation CstA NtRootD5_07830 PF02554 Carbon starvation protein CstA NtRootD5_07850 PF10759 Protein of unknown function (DUF2587) NtRootD5_07870 PF00248 Aldo/keto reductase family NtRootD5_07890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_07890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_07900 PF01261 Xylose isomerase-like TIM barrel NtRootD5_07910 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_07910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_07920 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_07930 PF00005 ABC transporter NtRootD5_07960 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_07990 PF01425 Amidase NtRootD5_08020 PF07687 Peptidase dimerisation domain NtRootD5_08020 PF01546 Peptidase family M20/M25/M40 NtRootD5_08030 PF02515 CoA-transferase family III NtRootD5_08040 PF01039 Carboxyl transferase domain NtRootD5_08080 PF00561 alpha/beta hydrolase fold NtRootD5_08090 PF12169 DNA polymerase III subunits gamma and tau domain III NtRootD5_08100 PF02223 Thymidylate kinase NtRootD5_08110 PF01053 Cys/Met metabolism PLP-dependent enzyme NtRootD5_08140 PF00300 Histidine phosphatase superfamily (branch 1) NtRootD5_08150 PF01895 PhoU domain NtRootD5_08160 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_08160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_08170 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_08170 PF00072 Response regulator receiver domain NtRootD5_08190 PF02559 CarD-like/TRCF domain NtRootD5_08200 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NtRootD5_08210 PF02542 YgbB family NtRootD5_08230 PF09190 DALR domain NtRootD5_08230 PF01406 tRNA synthetases class I (C) catalytic domain NtRootD5_08240 PF00588 SpoU rRNA Methylase family NtRootD5_08240 PF08032 RNA 2'-O ribose methyltransferase substrate binding NtRootD5_08260 PF00795 Carbon-nitrogen hydrolase NtRootD5_08270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NtRootD5_08270 PF00128 Alpha amylase, catalytic domain NtRootD5_08300 PF11897 Protein of unknown function (DUF3417) NtRootD5_08300 PF00343 Carbohydrate phosphorylase NtRootD5_08310 PF11896 Domain of unknown function (DUF3416) NtRootD5_08320 PF00128 Alpha amylase, catalytic domain NtRootD5_08320 PF16657 Maltogenic Amylase, C-terminal domain NtRootD5_08330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NtRootD5_08330 PF00128 Alpha amylase, catalytic domain NtRootD5_08330 PF02806 Alpha amylase, C-terminal all-beta domain NtRootD5_08360 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_08370 PF00128 Alpha amylase, catalytic domain NtRootD5_08390 PF14785 Maltose transport system permease protein MalF P2 domain NtRootD5_08390 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_08400 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_08410 PF00128 Alpha amylase, catalytic domain NtRootD5_08410 PF02903 Alpha amylase, N-terminal ig-like domain NtRootD5_08420 PF02913 FAD linked oxidases, C-terminal domain NtRootD5_08420 PF01565 FAD binding domain NtRootD5_08450 PF07969 Amidohydrolase family NtRootD5_08460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_08460 PF00005 ABC transporter NtRootD5_08470 PF00005 ABC transporter NtRootD5_08470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_08480 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_08490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NtRootD5_08500 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_08500 PF12911 N-terminal TM domain of oligopeptide transport permease C NtRootD5_08510 PF01979 Amidohydrolase family NtRootD5_08540 PF00728 Glycosyl hydrolase family 20, catalytic domain NtRootD5_08540 PF02838 Glycosyl hydrolase family 20, domain 2 NtRootD5_08550 PF00005 ABC transporter NtRootD5_08550 PF17912 MalK OB fold domain NtRootD5_08560 PF02358 Trehalose-phosphatase NtRootD5_08560 PF03636 Glycosyl hydrolase family 65, N-terminal domain NtRootD5_08560 PF03633 Glycosyl hydrolase family 65, C-terminal domain NtRootD5_08560 PF03632 Glycosyl hydrolase family 65 central catalytic domain NtRootD5_08570 PF00982 Glycosyltransferase family 20 NtRootD5_08590 PF02661 Fic/DOC family NtRootD5_08590 PF13784 Fic/DOC family N-terminal NtRootD5_08650 PF02861 Clp amino terminal domain, pathogenicity island component NtRootD5_08650 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_08650 PF07724 AAA domain (Cdc48 subfamily) NtRootD5_08650 PF17871 AAA lid domain NtRootD5_08650 PF10431 C-terminal, D2-small domain, of ClpB protein NtRootD5_08670 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_08680 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_08690 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_08700 PF01547 Bacterial extracellular solute-binding protein NtRootD5_08720 PF00251 Glycosyl hydrolases family 32 N-terminal domain NtRootD5_08720 PF08244 Glycosyl hydrolases family 32 C terminal NtRootD5_08760 PF09382 RQC domain NtRootD5_08760 PF16124 RecQ zinc-binding NtRootD5_08760 PF00270 DEAD/DEAH box helicase NtRootD5_08760 PF00570 HRDC domain NtRootD5_08760 PF00271 Helicase conserved C-terminal domain NtRootD5_08780 PF01256 Carbohydrate kinase NtRootD5_08800 PF13192 Thioredoxin domain NtRootD5_08800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_08870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NtRootD5_08870 PF02770 Acyl-CoA dehydrogenase, middle domain NtRootD5_08870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NtRootD5_08880 PF01575 MaoC like domain NtRootD5_08890 PF00083 Sugar (and other) transporter NtRootD5_08900 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_08900 PF00501 AMP-binding enzyme NtRootD5_08920 PF01266 FAD dependent oxidoreductase NtRootD5_08960 PF13520 Amino acid permease NtRootD5_08970 PF04371 Porphyromonas-type peptidyl-arginine deiminase NtRootD5_08980 PF00795 Carbon-nitrogen hydrolase NtRootD5_08990 PF00557 Metallopeptidase family M24 NtRootD5_09020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_09040 PF07687 Peptidase dimerisation domain NtRootD5_09040 PF01546 Peptidase family M20/M25/M40 NtRootD5_09060 PF07690 Major Facilitator Superfamily NtRootD5_09070 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_09080 PF02347 Glycine cleavage system P-protein NtRootD5_09090 PF01571 Aminomethyltransferase folate-binding domain NtRootD5_09090 PF08669 Glycine cleavage T-protein C-terminal barrel domain NtRootD5_09100 PF01597 Glycine cleavage H-protein NtRootD5_09110 PF03315 Serine dehydratase beta chain NtRootD5_09110 PF03313 Serine dehydratase alpha chain NtRootD5_09120 PF01223 DNA/RNA non-specific endonuclease NtRootD5_09160 PF04954 Siderophore-interacting protein NtRootD5_09160 PF08021 Siderophore-interacting FAD-binding domain NtRootD5_09170 PF03167 Uracil DNA glycosylase superfamily NtRootD5_09200 PF00313 'Cold-shock' DNA-binding domain NtRootD5_09210 PF00118 TCP-1/cpn60 chaperonin family NtRootD5_09220 PF00075 RNase H NtRootD5_09240 PF00672 HAMP domain NtRootD5_09240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_09240 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_09250 PF00072 Response regulator receiver domain NtRootD5_09250 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_09260 PF01810 LysE type translocator NtRootD5_09270 PF03466 LysR substrate binding domain NtRootD5_09270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_09290 PF07731 Multicopper oxidase NtRootD5_09290 PF07732 Multicopper oxidase NtRootD5_09290 PF00394 Multicopper oxidase NtRootD5_09340 PF00313 'Cold-shock' DNA-binding domain NtRootD5_09360 PF05977 Transmembrane secretion effector NtRootD5_09370 PF00266 Aminotransferase class-V NtRootD5_09380 PF18357 Diphteria toxin repressor SH3 domain NtRootD5_09380 PF02742 Iron dependent repressor, metal binding and dimerisation domain NtRootD5_09380 PF01325 Iron dependent repressor, N-terminal DNA binding domain NtRootD5_09390 PF01551 Peptidase family M23 NtRootD5_09390 PF04225 Opacity-associated protein A LysM-like domain NtRootD5_09400 PF08239 Bacterial SH3 domain NtRootD5_09400 PF00877 NlpC/P60 family NtRootD5_09400 PF01476 LysM domain NtRootD5_09430 PF12804 MobA-like NTP transferase domain NtRootD5_09450 PF01568 Molydopterin dinucleotide binding domain NtRootD5_09450 PF00384 Molybdopterin oxidoreductase NtRootD5_09460 PF02634 FdhD/NarQ family NtRootD5_09500 PF00005 ABC transporter NtRootD5_09510 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_09520 PF00497 Bacterial extracellular solute-binding proteins, family 3 NtRootD5_09550 PF16326 ABC transporter C-terminal domain NtRootD5_09550 PF00005 ABC transporter NtRootD5_09550 PF12848 ABC transporter NtRootD5_09560 PF00664 ABC transporter transmembrane region NtRootD5_09560 PF00005 ABC transporter NtRootD5_09570 PF00293 NUDIX domain NtRootD5_09640 PF00459 Inositol monophosphatase family NtRootD5_09750 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_09750 PF00072 Response regulator receiver domain NtRootD5_09760 PF13361 UvrD-like helicase C-terminal domain NtRootD5_09760 PF00580 UvrD/REP helicase N-terminal domain NtRootD5_09780 PF00549 CoA-ligase NtRootD5_09780 PF08442 ATP-grasp domain NtRootD5_09790 PF02629 CoA binding domain NtRootD5_09790 PF00549 CoA-ligase NtRootD5_09810 PF00294 pfkB family carbohydrate kinase NtRootD5_09830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NtRootD5_09830 PF00205 Thiamine pyrophosphate enzyme, central domain NtRootD5_09830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_09840 PF00171 Aldehyde dehydrogenase family NtRootD5_09850 PF01261 Xylose isomerase-like TIM barrel NtRootD5_09860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_09860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_09870 PF01261 Xylose isomerase-like TIM barrel NtRootD5_09880 PF04962 KduI/IolB family NtRootD5_09890 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_09890 PF07702 UTRA domain NtRootD5_09910 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_09920 PF00005 ABC transporter NtRootD5_09930 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_09940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_09940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_09960 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_09960 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_10050 PF00474 Sodium:solute symporter family NtRootD5_10060 PF07883 Cupin domain NtRootD5_10060 PF01381 Helix-turn-helix NtRootD5_10100 PF00491 Arginase family NtRootD5_10110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_10110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NtRootD5_10110 PF00205 Thiamine pyrophosphate enzyme, central domain NtRootD5_10120 PF07690 Major Facilitator Superfamily NtRootD5_10120 PF00083 Sugar (and other) transporter NtRootD5_10130 PF00753 Metallo-beta-lactamase superfamily NtRootD5_10140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_10140 PF03466 LysR substrate binding domain NtRootD5_10160 PF07690 Major Facilitator Superfamily NtRootD5_10170 PF00664 ABC transporter transmembrane region NtRootD5_10170 PF00005 ABC transporter NtRootD5_10180 PF00664 ABC transporter transmembrane region NtRootD5_10180 PF00005 ABC transporter NtRootD5_10200 PF03932 CutC family NtRootD5_10250 PF07728 AAA domain (dynein-related subfamily) NtRootD5_10250 PF12102 Domain of unknown function (DUF3578) NtRootD5_10280 PF13426 PAS domain NtRootD5_10280 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_10280 PF00672 HAMP domain NtRootD5_10280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_10290 PF00072 Response regulator receiver domain NtRootD5_10290 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_10300 PF00037 4Fe-4S binding domain NtRootD5_10310 PF00171 Aldehyde dehydrogenase family NtRootD5_10330 PF00701 Dihydrodipicolinate synthetase family NtRootD5_10340 PF00378 Enoyl-CoA hydratase/isomerase NtRootD5_10350 PF02515 CoA-transferase family III NtRootD5_10360 PF01571 Aminomethyltransferase folate-binding domain NtRootD5_10360 PF08669 Glycine cleavage T-protein C-terminal barrel domain NtRootD5_10360 PF17806 Sarcosine oxidase A3 domain NtRootD5_10360 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_10370 PF00083 Sugar (and other) transporter NtRootD5_10380 PF07883 Cupin domain NtRootD5_10380 PF01381 Helix-turn-helix NtRootD5_10410 PF06968 Biotin and Thiamin Synthesis associated domain NtRootD5_10410 PF04055 Radical SAM superfamily NtRootD5_10430 PF05532 CsbD-like NtRootD5_10460 PF00107 Zinc-binding dehydrogenase NtRootD5_10460 PF13823 Alcohol dehydrogenase GroES-associated NtRootD5_10460 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_10490 PF13580 SIS domain NtRootD5_10510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NtRootD5_10540 PF02734 DAK2 domain NtRootD5_10540 PF02733 Dak1 domain NtRootD5_10550 PF02502 Ribose/Galactose Isomerase NtRootD5_10560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NtRootD5_10560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NtRootD5_10580 PF07690 Major Facilitator Superfamily NtRootD5_10590 PF00121 Triosephosphate isomerase NtRootD5_10620 PF00571 CBS domain NtRootD5_10630 PF16921 Tex protein YqgF-like domain NtRootD5_10630 PF17674 HHH domain NtRootD5_10630 PF09371 Tex-like protein N-terminal domain NtRootD5_10630 PF00575 S1 RNA binding domain NtRootD5_10670 PF00962 Adenosine/AMP deaminase NtRootD5_10680 PF00128 Alpha amylase, catalytic domain NtRootD5_10680 PF02903 Alpha amylase, N-terminal ig-like domain NtRootD5_10680 PF00395 S-layer homology domain NtRootD5_10690 PF00708 Acylphosphatase NtRootD5_10700 PF01850 PIN domain NtRootD5_10720 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_10740 PF00294 pfkB family carbohydrate kinase NtRootD5_10750 PF07729 FCD domain NtRootD5_10750 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_10760 PF07690 Major Facilitator Superfamily NtRootD5_10770 PF01156 Inosine-uridine preferring nucleoside hydrolase NtRootD5_10790 PF08532 Beta-galactosidase trimerisation domain NtRootD5_10790 PF08533 Beta-galactosidase C-terminal domain NtRootD5_10790 PF02449 Beta-galactosidase NtRootD5_10800 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_10810 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_10820 PF01547 Bacterial extracellular solute-binding protein NtRootD5_10920 PF14310 Fibronectin type III-like domain NtRootD5_10920 PF00933 Glycosyl hydrolase family 3 N terminal domain NtRootD5_10920 PF01915 Glycosyl hydrolase family 3 C-terminal domain NtRootD5_10930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_10930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_10960 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_10970 PF03466 LysR substrate binding domain NtRootD5_10970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_10980 PF00795 Carbon-nitrogen hydrolase NtRootD5_11000 PF07690 Major Facilitator Superfamily NtRootD5_11010 PF03741 Integral membrane protein TerC family NtRootD5_11070 PF01022 Bacterial regulatory protein, arsR family NtRootD5_11100 PF01047 MarR family NtRootD5_11110 PF00892 EamA-like transporter family NtRootD5_11130 PF00144 Beta-lactamase NtRootD5_11240 PF00313 'Cold-shock' DNA-binding domain NtRootD5_11260 PF13732 Domain of unknown function (DUF4162) NtRootD5_11260 PF00005 ABC transporter NtRootD5_11300 PF13520 Amino acid permease NtRootD5_11330 PF01047 MarR family NtRootD5_11380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NtRootD5_11380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NtRootD5_11380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NtRootD5_11390 PF00534 Glycosyl transferases group 1 NtRootD5_11390 PF13439 Glycosyltransferase Family 4 NtRootD5_11400 PF13411 MerR HTH family regulatory protein NtRootD5_11410 PF00011 Hsp20/alpha crystallin family NtRootD5_11420 PF00226 DnaJ domain NtRootD5_11420 PF01556 DnaJ C terminal domain NtRootD5_11420 PF00684 DnaJ central domain NtRootD5_11460 PF00551 Formyl transferase NtRootD5_11470 PF07690 Major Facilitator Superfamily NtRootD5_11480 PF01380 SIS domain NtRootD5_11520 PF02142 MGS-like domain NtRootD5_11520 PF01808 AICARFT/IMPCHase bienzyme NtRootD5_11540 PF03971 Monomeric isocitrate dehydrogenase NtRootD5_11550 PF01266 FAD dependent oxidoreductase NtRootD5_11560 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_11570 PF00005 ABC transporter NtRootD5_11600 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_11600 PF07702 UTRA domain NtRootD5_11610 PF13419 Haloacid dehalogenase-like hydrolase NtRootD5_11630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_11630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_11640 PF00005 ABC transporter NtRootD5_11660 PF13407 Periplasmic binding protein domain NtRootD5_11670 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_11680 PF00005 ABC transporter NtRootD5_11690 PF00480 ROK family NtRootD5_11690 PF01047 MarR family NtRootD5_11700 PF00795 Carbon-nitrogen hydrolase NtRootD5_11720 PF01168 Alanine racemase, N-terminal domain NtRootD5_11720 PF00842 Alanine racemase, C-terminal domain NtRootD5_11740 PF13520 Amino acid permease NtRootD5_11750 PF01593 Flavin containing amine oxidoreductase NtRootD5_11750 PF02027 RolB/RolC glucosidase family NtRootD5_11760 PF00132 Bacterial transferase hexapeptide (six repeats) NtRootD5_11770 PF13649 Methyltransferase domain NtRootD5_11780 PF00551 Formyl transferase NtRootD5_11790 PF00464 Serine hydroxymethyltransferase NtRootD5_11800 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NtRootD5_11800 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NtRootD5_11810 PF00230 Major intrinsic protein NtRootD5_11820 PF00005 ABC transporter NtRootD5_11860 PF03372 Endonuclease/Exonuclease/phosphatase family NtRootD5_11870 PF00579 tRNA synthetases class I (W and Y) NtRootD5_11940 PF13085 2Fe-2S iron-sulfur cluster binding domain NtRootD5_11950 PF00890 FAD binding domain NtRootD5_11950 PF02910 Fumarate reductase flavoprotein C-term NtRootD5_11970 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NtRootD5_11980 PF01050 Mannose-6-phosphate isomerase NtRootD5_11980 PF00483 Nucleotidyl transferase NtRootD5_11990 PF01546 Peptidase family M20/M25/M40 NtRootD5_11990 PF04107 Glutamate-cysteine ligase family 2(GCS2) NtRootD5_12000 PF01047 MarR family NtRootD5_12010 PF02566 OsmC-like protein NtRootD5_12020 PF16884 N-terminal domain of oxidoreductase NtRootD5_12020 PF00107 Zinc-binding dehydrogenase NtRootD5_12030 PF02608 ABC transporter substrate-binding protein PnrA-like NtRootD5_12040 PF00005 ABC transporter NtRootD5_12050 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_12060 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_12070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NtRootD5_12080 PF02885 Glycosyl transferase family, helical bundle domain NtRootD5_12080 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NtRootD5_12080 PF00591 Glycosyl transferase family, a/b domain NtRootD5_12100 PF09335 SNARE associated Golgi protein NtRootD5_12110 PF00962 Adenosine/AMP deaminase NtRootD5_12120 PF03819 MazG nucleotide pyrophosphohydrolase domain NtRootD5_12130 PF00113 Enolase, C-terminal TIM barrel domain NtRootD5_12130 PF03952 Enolase, N-terminal domain NtRootD5_12160 PF02541 Ppx/GppA phosphatase family NtRootD5_12170 PF00082 Subtilase family NtRootD5_12180 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_12190 PF00583 Acetyltransferase (GNAT) family NtRootD5_12230 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_12230 PF00672 HAMP domain NtRootD5_12240 PF00072 Response regulator receiver domain NtRootD5_12240 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_12270 PF00005 ABC transporter NtRootD5_12270 PF02687 FtsX-like permease family NtRootD5_12270 PF12704 MacB-like periplasmic core domain NtRootD5_12280 PF00005 ABC transporter NtRootD5_12280 PF02687 FtsX-like permease family NtRootD5_12280 PF12704 MacB-like periplasmic core domain NtRootD5_12310 PF00005 ABC transporter NtRootD5_12320 PF00005 ABC transporter NtRootD5_12320 PF12399 Branched-chain amino acid ATP-binding cassette transporter NtRootD5_12330 PF11862 Domain of unknown function (DUF3382) NtRootD5_12330 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_12340 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_12360 PF02803 Thiolase, C-terminal domain NtRootD5_12360 PF00108 Thiolase, N-terminal domain NtRootD5_12370 PF00288 GHMP kinases N terminal domain NtRootD5_12370 PF10509 Galactokinase galactose-binding signature NtRootD5_12370 PF08544 GHMP kinases C terminal NtRootD5_12380 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NtRootD5_12380 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NtRootD5_12390 PF01263 Aldose 1-epimerase NtRootD5_12400 PF01594 AI-2E family transporter NtRootD5_12410 PF13291 ACT domain NtRootD5_12410 PF00291 Pyridoxal-phosphate dependent enzyme NtRootD5_12420 PF01694 Rhomboid family NtRootD5_12430 PF01272 Transcription elongation factor, GreA/GreB, C-term NtRootD5_12430 PF03449 Transcription elongation factor, N-terminal NtRootD5_12450 PF02585 GlcNAc-PI de-N-acetylase NtRootD5_12470 PF03006 Haemolysin-III related NtRootD5_12480 PF01255 Putative undecaprenyl diphosphate synthase NtRootD5_12490 PF02562 PhoH-like protein NtRootD5_12490 PF13638 PIN domain NtRootD5_12540 PF07690 Major Facilitator Superfamily NtRootD5_12560 PF00206 Lyase NtRootD5_12560 PF10415 Fumarase C C-terminus NtRootD5_12570 PF00484 Carbonic anhydrase NtRootD5_12590 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NtRootD5_12610 PF01238 Phosphomannose isomerase type I NtRootD5_12630 PF00731 AIR carboxylase NtRootD5_12640 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NtRootD5_12640 PF02222 ATP-grasp domain NtRootD5_12670 PF02467 Transcription factor WhiB NtRootD5_12680 PF00534 Glycosyl transferases group 1 NtRootD5_12680 PF00535 Glycosyl transferase family 2 NtRootD5_12730 PF05221 S-adenosyl-L-homocysteine hydrolase NtRootD5_12730 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NtRootD5_12740 PF17964 Bacterial Ig domain NtRootD5_12740 PF03734 L,D-transpeptidase catalytic domain NtRootD5_12750 PF00805 Pentapeptide repeats (8 copies) NtRootD5_12790 PF00501 AMP-binding enzyme NtRootD5_12800 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NtRootD5_12800 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase NtRootD5_12810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NtRootD5_12820 PF00171 Aldehyde dehydrogenase family NtRootD5_12850 PF07726 ATPase family associated with various cellular activities (AAA) NtRootD5_12850 PF17863 AAA lid domain NtRootD5_12860 PF01026 TatD related DNase NtRootD5_12870 PF07501 G5 domain NtRootD5_12870 PF06737 Transglycosylase-like domain NtRootD5_12870 PF03990 G5-linked-Ubiquitin-like domain NtRootD5_12880 PF00398 Ribosomal RNA adenine dimethylase NtRootD5_12890 PF08544 GHMP kinases C terminal NtRootD5_12890 PF00288 GHMP kinases N terminal domain NtRootD5_12900 PF00005 ABC transporter NtRootD5_12900 PF16326 ABC transporter C-terminal domain NtRootD5_12900 PF12848 ABC transporter NtRootD5_12920 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_12930 PF12804 MobA-like NTP transferase domain NtRootD5_12930 PF00132 Bacterial transferase hexapeptide (six repeats) NtRootD5_12940 PF14572 Phosphoribosyl synthetase-associated domain NtRootD5_12940 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NtRootD5_12950 PF01386 Ribosomal L25p family NtRootD5_12950 PF14693 Ribosomal protein TL5, C-terminal domain NtRootD5_12960 PF01195 Peptidyl-tRNA hydrolase NtRootD5_12980 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_12980 PF00072 Response regulator receiver domain NtRootD5_13000 PF00266 Aminotransferase class-V NtRootD5_13010 PF01592 NifU-like N terminal domain NtRootD5_13020 PF06965 Na+/H+ antiporter 1 NtRootD5_13050 PF11066 Protein of unknown function (DUF2867) NtRootD5_13050 PF13460 NAD(P)H-binding NtRootD5_13060 PF02559 CarD-like/TRCF domain NtRootD5_13060 PF00270 DEAD/DEAH box helicase NtRootD5_13060 PF00271 Helicase conserved C-terminal domain NtRootD5_13060 PF03461 TRCF domain NtRootD5_13060 PF17757 UvrB interaction domain NtRootD5_13070 PF04307 LexA-binding, inner membrane-associated putative hydrolase NtRootD5_13090 PF01791 DeoC/LacD family aldolase NtRootD5_13110 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_13110 PF18113 Rubredoxin binding C-terminal domain NtRootD5_13180 PF05199 GMC oxidoreductase NtRootD5_13230 PF00717 Peptidase S24-like NtRootD5_13240 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_13250 PF00083 Sugar (and other) transporter NtRootD5_13270 PF13438 Domain of unknown function (DUF4113) NtRootD5_13270 PF00817 impB/mucB/samB family NtRootD5_13270 PF11799 impB/mucB/samB family C-terminal domain NtRootD5_13270 PF11798 IMS family HHH motif NtRootD5_13290 PF02602 Uroporphyrinogen-III synthase HemD NtRootD5_13290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NtRootD5_13300 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_13300 PF18267 Rubredoxin NAD+ reductase C-terminal domain NtRootD5_13300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NtRootD5_13300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NtRootD5_13300 PF04324 BFD-like [2Fe-2S] binding domain NtRootD5_13320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NtRootD5_13320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NtRootD5_13320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NtRootD5_13320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NtRootD5_13330 PF00251 Glycosyl hydrolases family 32 N-terminal domain NtRootD5_13330 PF08244 Glycosyl hydrolases family 32 C terminal NtRootD5_13340 PF02435 Levansucrase/Invertase NtRootD5_13350 PF01048 Phosphorylase superfamily NtRootD5_13360 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_13360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NtRootD5_13380 PF14759 Reductase C-terminal NtRootD5_13380 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_13390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NtRootD5_13390 PF01568 Molydopterin dinucleotide binding domain NtRootD5_13390 PF00384 Molybdopterin oxidoreductase NtRootD5_13400 PF07690 Major Facilitator Superfamily NtRootD5_13410 PF00083 Sugar (and other) transporter NtRootD5_13410 PF07690 Major Facilitator Superfamily NtRootD5_13420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NtRootD5_13420 PF00289 Biotin carboxylase, N-terminal domain NtRootD5_13420 PF00364 Biotin-requiring enzyme NtRootD5_13420 PF02785 Biotin carboxylase C-terminal domain NtRootD5_13430 PF02545 Maf-like protein NtRootD5_13440 PF03176 MMPL family NtRootD5_13450 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_13460 PF01906 Putative heavy-metal-binding NtRootD5_13470 PF00375 Sodium:dicarboxylate symporter family NtRootD5_13500 PF01039 Carboxyl transferase domain NtRootD5_13520 PF02237 Biotin protein ligase C terminal domain NtRootD5_13520 PF03099 Biotin/lipoate A/B protein ligase family NtRootD5_13520 PF08279 HTH domain NtRootD5_13540 PF00211 Adenylate and Guanylate cyclase catalytic domain NtRootD5_13540 PF16701 Adenylate cyclase regulatory domain NtRootD5_13570 PF07726 ATPase family associated with various cellular activities (AAA) NtRootD5_13570 PF17863 AAA lid domain NtRootD5_13630 PF13191 AAA ATPase domain NtRootD5_13630 PF00069 Protein kinase domain NtRootD5_13650 PF01580 FtsK/SpoIIIE family NtRootD5_13650 PF12538 DNA transporter NtRootD5_13660 PF00533 BRCA1 C Terminus (BRCT) domain NtRootD5_13660 PF01653 NAD-dependent DNA ligase adenylation domain NtRootD5_13660 PF03120 NAD-dependent DNA ligase OB-fold domain NtRootD5_13660 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NtRootD5_13660 PF12826 Helix-hairpin-helix motif NtRootD5_13670 PF00459 Inositol monophosphatase family NtRootD5_13690 PF00296 Luciferase-like monooxygenase NtRootD5_13730 PF00072 Response regulator receiver domain NtRootD5_13750 PF03600 Citrate transporter NtRootD5_13760 PF03816 Cell envelope-related transcriptional attenuator domain NtRootD5_13780 PF02686 Glu-tRNAGln amidotransferase C subunit NtRootD5_13790 PF01425 Amidase NtRootD5_13800 PF02934 GatB/GatE catalytic domain NtRootD5_13800 PF02637 GatB domain NtRootD5_13820 PF03781 Sulfatase-modifying factor enzyme 1 NtRootD5_13830 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_13840 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_13860 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_13880 PF03466 LysR substrate binding domain NtRootD5_13880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_13890 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_13890 PF00107 Zinc-binding dehydrogenase NtRootD5_13900 PF00155 Aminotransferase class I and II NtRootD5_13920 PF01979 Amidohydrolase family NtRootD5_13930 PF18080 Galactose mutarotase-like fold domain NtRootD5_13930 PF08305 NPCBM/NEW2 domain NtRootD5_13930 PF17974 Galactose-binding domain-like NtRootD5_13930 PF17451 Glycosyl hydrolase 101 beta sandwich domain NtRootD5_13930 PF12905 Endo-alpha-N-acetylgalactosaminidase NtRootD5_13930 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase NtRootD5_13940 PF01380 SIS domain NtRootD5_13960 PF00294 pfkB family carbohydrate kinase NtRootD5_13970 PF01116 Fructose-bisphosphate aldolase class-II NtRootD5_13980 PF00455 DeoR C terminal sensor domain NtRootD5_13980 PF08220 DeoR-like helix-turn-helix domain NtRootD5_13990 PF00300 Histidine phosphatase superfamily (branch 1) NtRootD5_14020 PF01053 Cys/Met metabolism PLP-dependent enzyme NtRootD5_14030 PF00561 alpha/beta hydrolase fold NtRootD5_14100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NtRootD5_14100 PF03129 Anticodon binding domain NtRootD5_14120 PF01565 FAD binding domain NtRootD5_14120 PF08031 Berberine and berberine like NtRootD5_14140 PF03649 Uncharacterised protein family (UPF0014) NtRootD5_14150 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_14150 PF00672 HAMP domain NtRootD5_14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_14160 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_14160 PF00072 Response regulator receiver domain NtRootD5_14170 PF09335 SNARE associated Golgi protein NtRootD5_14180 PF01569 PAP2 superfamily NtRootD5_14200 PF00005 ABC transporter NtRootD5_14220 PF07730 Histidine kinase NtRootD5_14220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_14230 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_14230 PF00072 Response regulator receiver domain NtRootD5_14240 PF01207 Dihydrouridine synthase (Dus) NtRootD5_14250 PF01966 HD domain NtRootD5_14250 PF13286 Phosphohydrolase-associated domain NtRootD5_14260 PF08275 DNA primase catalytic core, N-terminal domain NtRootD5_14260 PF01807 CHC2 zinc finger NtRootD5_14260 PF13662 Toprim domain NtRootD5_14260 PF08278 DNA primase DnaG DnaB-binding NtRootD5_14260 PF10410 DnaB-helicase binding domain of primase NtRootD5_14280 PF00756 Putative esterase NtRootD5_14290 PF09924 Uncharacterised conserved protein (DUF2156) NtRootD5_14310 PF07690 Major Facilitator Superfamily NtRootD5_14330 PF01066 CDP-alcohol phosphatidyltransferase NtRootD5_14350 PF08323 Starch synthase catalytic domain NtRootD5_14360 PF02770 Acyl-CoA dehydrogenase, middle domain NtRootD5_14360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NtRootD5_14360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NtRootD5_14370 PF01551 Peptidase family M23 NtRootD5_14380 PF00318 Ribosomal protein S2 NtRootD5_14390 PF00889 Elongation factor TS NtRootD5_14400 PF00696 Amino acid kinase family NtRootD5_14410 PF01765 Ribosome recycling factor NtRootD5_14450 PF00474 Sodium:solute symporter family NtRootD5_14470 PF00072 Response regulator receiver domain NtRootD5_14470 PF04397 LytTr DNA-binding domain NtRootD5_14480 PF07694 5TMR of 5TMR-LYT NtRootD5_14480 PF06580 Histidine kinase NtRootD5_14500 PF00474 Sodium:solute symporter family NtRootD5_14510 PF14791 DNA polymerase beta thumb NtRootD5_14510 PF02811 PHP domain NtRootD5_14510 PF14716 Helix-hairpin-helix domain NtRootD5_14550 PF01037 Lrp/AsnC ligand binding domain NtRootD5_14560 PF00676 Dehydrogenase E1 component NtRootD5_14570 PF02779 Transketolase, pyrimidine binding domain NtRootD5_14570 PF02780 Transketolase, C-terminal domain NtRootD5_14580 PF02817 e3 binding domain NtRootD5_14580 PF00364 Biotin-requiring enzyme NtRootD5_14580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NtRootD5_14590 PF16363 GDP-mannose 4,6 dehydratase NtRootD5_14620 PF01039 Carboxyl transferase domain NtRootD5_14630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NtRootD5_14630 PF00364 Biotin-requiring enzyme NtRootD5_14630 PF00289 Biotin carboxylase, N-terminal domain NtRootD5_14630 PF02785 Biotin carboxylase C-terminal domain NtRootD5_14640 PF02770 Acyl-CoA dehydrogenase, middle domain NtRootD5_14640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NtRootD5_14640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NtRootD5_14650 PF01144 Coenzyme A transferase NtRootD5_14660 PF01144 Coenzyme A transferase NtRootD5_14680 PF03328 HpcH/HpaI aldolase/citrate lyase family NtRootD5_14690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_14690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_14720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_14720 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_14730 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_14740 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_14750 PF01547 Bacterial extracellular solute-binding protein NtRootD5_14760 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_14780 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NtRootD5_14780 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NtRootD5_14780 PF13288 DXP reductoisomerase C-terminal domain NtRootD5_14790 PF02163 Peptidase family M50 NtRootD5_14790 PF17820 PDZ domain NtRootD5_14810 PF04551 GcpE protein NtRootD5_14840 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_14860 PF00005 ABC transporter NtRootD5_14880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NtRootD5_14880 PF03129 Anticodon binding domain NtRootD5_14880 PF04073 Aminoacyl-tRNA editing domain NtRootD5_14890 PF01925 Sulfite exporter TauE/SafE NtRootD5_14900 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase NtRootD5_14930 PF02576 RimP N-terminal domain NtRootD5_14930 PF17384 RimP C-terminal SH3 domain NtRootD5_14940 PF13184 NusA-like KH domain NtRootD5_14940 PF08529 NusA N-terminal domain NtRootD5_14960 PF04760 Translation initiation factor IF-2, N-terminal region NtRootD5_14960 PF11987 Translation-initiation factor 2 NtRootD5_14960 PF00009 Elongation factor Tu GTP binding domain NtRootD5_14970 PF02033 Ribosome-binding factor A NtRootD5_14980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NtRootD5_14990 PF00155 Aminotransferase class I and II NtRootD5_15000 PF09142 tRNA Pseudouridine synthase II, C terminal NtRootD5_15000 PF16198 tRNA pseudouridylate synthase B C-terminal domain NtRootD5_15000 PF01509 TruB family pseudouridylate synthase (N terminal domain) NtRootD5_15030 PF01687 Riboflavin kinase NtRootD5_15030 PF06574 FAD synthetase NtRootD5_15040 PF00312 Ribosomal protein S15 NtRootD5_15050 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NtRootD5_15050 PF01138 3' exoribonuclease family, domain 1 NtRootD5_15050 PF00575 S1 RNA binding domain NtRootD5_15050 PF00013 KH domain NtRootD5_15060 PF00675 Insulinase (Peptidase family M16) NtRootD5_15060 PF05193 Peptidase M16 inactive domain NtRootD5_15090 PF04055 Radical SAM superfamily NtRootD5_15090 PF06463 Molybdenum Cofactor Synthesis C NtRootD5_15100 PF00072 Response regulator receiver domain NtRootD5_15100 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_15110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_15110 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_15110 PF00672 HAMP domain NtRootD5_15130 PF00994 Probable molybdopterin binding domain NtRootD5_15130 PF03454 MoeA C-terminal region (domain IV) NtRootD5_15130 PF03453 MoeA N-terminal region (domain I and II) NtRootD5_15140 PF01967 MoaC family NtRootD5_15150 PF00994 Probable molybdopterin binding domain NtRootD5_15160 PF02391 MoaE protein NtRootD5_15170 PF05173 Dihydrodipicolinate reductase, C-terminus NtRootD5_15170 PF01113 Dihydrodipicolinate reductase, N-terminus NtRootD5_15210 PF00701 Dihydrodipicolinate synthetase family NtRootD5_15220 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NtRootD5_15220 PF12706 Beta-lactamase superfamily domain NtRootD5_15220 PF17770 Ribonuclease J C-terminal domain NtRootD5_15230 PF17854 FtsK alpha domain NtRootD5_15230 PF09397 Ftsk gamma domain NtRootD5_15230 PF01580 FtsK/SpoIIIE family NtRootD5_15240 PF01066 CDP-alcohol phosphatidyltransferase NtRootD5_15250 PF00994 Probable molybdopterin binding domain NtRootD5_15250 PF18146 Damage-inducible protein CinA KH domain NtRootD5_15250 PF02464 Competence-damaged protein NtRootD5_15290 PF00154 recA bacterial DNA recombination protein NtRootD5_15300 PF02631 RecX family NtRootD5_15310 PF01938 TRAM domain NtRootD5_15310 PF00919 Uncharacterized protein family UPF0004 NtRootD5_15310 PF04055 Radical SAM superfamily NtRootD5_15330 PF01678 Diaminopimelate epimerase NtRootD5_15340 PF05175 Methyltransferase small domain NtRootD5_15350 PF16360 GTP-binding GTPase Middle Region NtRootD5_15350 PF13167 GTP-binding GTPase N-terminal NtRootD5_15350 PF01926 50S ribosome-binding GTPase NtRootD5_15360 PF13307 Helicase C-terminal domain NtRootD5_15370 PF01726 LexA DNA binding domain NtRootD5_15370 PF00717 Peptidase S24-like NtRootD5_15380 PF01476 LysM domain NtRootD5_15400 PF00155 Aminotransferase class I and II NtRootD5_15410 PF00475 Imidazoleglycerol-phosphate dehydratase NtRootD5_15420 PF00117 Glutamine amidotransferase class-I NtRootD5_15440 PF00977 Histidine biosynthesis protein NtRootD5_15490 PF00707 Translation initiation factor IF-3, C-terminal domain NtRootD5_15490 PF05198 Translation initiation factor IF-3, N-terminal domain NtRootD5_15500 PF01632 Ribosomal protein L35 NtRootD5_15510 PF00453 Ribosomal protein L20 NtRootD5_15520 PF08032 RNA 2'-O ribose methyltransferase substrate binding NtRootD5_15520 PF00588 SpoU rRNA Methylase family NtRootD5_15530 PF16916 Dimerisation domain of Zinc Transporter NtRootD5_15530 PF01545 Cation efflux family NtRootD5_15540 PF07690 Major Facilitator Superfamily NtRootD5_15550 PF00293 NUDIX domain NtRootD5_15560 PF04055 Radical SAM superfamily NtRootD5_15570 PF01470 Pyroglutamyl peptidase NtRootD5_15610 PF01409 tRNA synthetases class II core domain (F) NtRootD5_15610 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NtRootD5_15620 PF03484 tRNA synthetase B5 domain NtRootD5_15620 PF03147 Ferredoxin-fold anticodon binding domain NtRootD5_15620 PF01588 Putative tRNA binding domain NtRootD5_15620 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NtRootD5_15620 PF03483 B3/4 domain NtRootD5_15630 PF00089 Trypsin NtRootD5_15670 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_15670 PF00668 Condensation domain NtRootD5_15670 PF07993 Male sterility protein NtRootD5_15670 PF00501 AMP-binding enzyme NtRootD5_15670 PF00550 Phosphopantetheine attachment site NtRootD5_15680 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_15680 PF00107 Zinc-binding dehydrogenase NtRootD5_15700 PF02774 Semialdehyde dehydrogenase, dimerisation domain NtRootD5_15700 PF01118 Semialdehyde dehydrogenase, NAD binding domain NtRootD5_15710 PF01960 ArgJ family NtRootD5_15720 PF00696 Amino acid kinase family NtRootD5_15730 PF00202 Aminotransferase class-III NtRootD5_15740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NtRootD5_15740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NtRootD5_15750 PF01316 Arginine repressor, DNA binding domain NtRootD5_15750 PF02863 Arginine repressor, C-terminal domain NtRootD5_15760 PF00764 Arginosuccinate synthase NtRootD5_15770 PF00206 Lyase NtRootD5_15770 PF14698 Argininosuccinate lyase C-terminal NtRootD5_15790 PF02805 Metal binding domain of Ada NtRootD5_15790 PF00730 HhH-GPD superfamily base excision DNA repair protein NtRootD5_15790 PF06029 AlkA N-terminal domain NtRootD5_15790 PF12833 Helix-turn-helix domain NtRootD5_15800 PF02245 Methylpurine-DNA glycosylase (MPG) NtRootD5_15820 PF00579 tRNA synthetases class I (W and Y) NtRootD5_15850 PF18407 GCN5-related N-acetyltransferase like domain NtRootD5_15850 PF13344 Haloacid dehalogenase-like hydrolase NtRootD5_15870 PF01728 FtsJ-like methyltransferase NtRootD5_15870 PF01479 S4 domain NtRootD5_15880 PF01513 ATP-NAD kinase NtRootD5_15890 PF02463 RecF/RecN/SMC N terminal domain NtRootD5_15900 PF06418 CTP synthase N-terminus NtRootD5_15900 PF00117 Glutamine amidotransferase class-I NtRootD5_15920 PF00589 Phage integrase family NtRootD5_15920 PF02899 Phage integrase, N-terminal SAM-like domain NtRootD5_15960 PF00285 Citrate synthase, C-terminal domain NtRootD5_15980 PF03972 MmgE/PrpD family NtRootD5_15990 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_15990 PF07729 FCD domain NtRootD5_16000 PF00072 Response regulator receiver domain NtRootD5_16000 PF04703 FaeA-like protein NtRootD5_16010 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NtRootD5_16010 PF17203 Single cache domain 3 NtRootD5_16010 PF00989 PAS fold NtRootD5_16010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_16020 PF00375 Sodium:dicarboxylate symporter family NtRootD5_16030 PF13614 AAA domain NtRootD5_16040 PF02616 Segregation and condensation protein ScpA NtRootD5_16050 PF04079 Segregation and condensation complex subunit ScpB NtRootD5_16060 PF00849 RNA pseudouridylate synthase NtRootD5_16060 PF01479 S4 domain NtRootD5_16070 PF02153 Prephenate dehydrogenase NtRootD5_16080 PF02224 Cytidylate kinase NtRootD5_16100 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NtRootD5_16100 PF01926 50S ribosome-binding GTPase NtRootD5_16110 PF01047 MarR family NtRootD5_16120 PF07690 Major Facilitator Superfamily NtRootD5_16140 PF01597 Glycine cleavage H-protein NtRootD5_16150 PF00498 FHA domain NtRootD5_16160 PF00376 MerR family regulatory protein NtRootD5_16170 PF02577 Bifunctional nuclease NtRootD5_16180 PF13411 MerR HTH family regulatory protein NtRootD5_16190 PF13614 AAA domain NtRootD5_16200 PF02785 Biotin carboxylase C-terminal domain NtRootD5_16200 PF00289 Biotin carboxylase, N-terminal domain NtRootD5_16200 PF00364 Biotin-requiring enzyme NtRootD5_16200 PF02436 Conserved carboxylase domain NtRootD5_16200 PF00682 HMGL-like NtRootD5_16200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NtRootD5_16210 PF00501 AMP-binding enzyme NtRootD5_16220 PF00480 ROK family NtRootD5_16240 PF12146 Serine aminopeptidase, S33 NtRootD5_16270 PF01474 Class-II DAHP synthetase family NtRootD5_16280 PF00069 Protein kinase domain NtRootD5_16280 PF03793 PASTA domain NtRootD5_16290 PF05257 CHAP domain NtRootD5_16290 PF01476 LysM domain NtRootD5_16320 PF00348 Polyprenyl synthetase NtRootD5_16350 PF11799 impB/mucB/samB family C-terminal domain NtRootD5_16350 PF00817 impB/mucB/samB family NtRootD5_16370 PF02381 MraZ protein, putative antitoxin-like NtRootD5_16380 PF01795 MraW methylase family NtRootD5_16400 PF03717 Penicillin-binding Protein dimerisation domain NtRootD5_16400 PF00905 Penicillin binding protein transpeptidase domain NtRootD5_16410 PF01225 Mur ligase family, catalytic domain NtRootD5_16410 PF08245 Mur ligase middle domain NtRootD5_16410 PF02875 Mur ligase family, glutamate ligase domain NtRootD5_16420 PF01225 Mur ligase family, catalytic domain NtRootD5_16420 PF02875 Mur ligase family, glutamate ligase domain NtRootD5_16420 PF08245 Mur ligase middle domain NtRootD5_16430 PF00953 Glycosyl transferase family 4 NtRootD5_16440 PF02875 Mur ligase family, glutamate ligase domain NtRootD5_16440 PF08245 Mur ligase middle domain NtRootD5_16450 PF01098 Cell cycle protein NtRootD5_16460 PF04101 Glycosyltransferase family 28 C-terminal domain NtRootD5_16460 PF03033 Glycosyltransferase family 28 N-terminal domain NtRootD5_16470 PF08245 Mur ligase middle domain NtRootD5_16470 PF02875 Mur ligase family, glutamate ligase domain NtRootD5_16470 PF01225 Mur ligase family, catalytic domain NtRootD5_16490 PF12327 FtsZ family, C-terminal domain NtRootD5_16490 PF00091 Tubulin/FtsZ family, GTPase domain NtRootD5_16500 PF02578 Multi-copper polyphenol oxidoreductase laccase NtRootD5_16510 PF01168 Alanine racemase, N-terminal domain NtRootD5_16520 PF04472 Cell division protein SepF NtRootD5_16540 PF05103 DivIVA protein NtRootD5_16550 PF01252 Signal peptidase (SPase) II NtRootD5_16560 PF00849 RNA pseudouridylate synthase NtRootD5_16570 PF02811 PHP domain NtRootD5_16570 PF14579 Helix-hairpin-helix motif NtRootD5_16570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NtRootD5_16570 PF07733 Bacterial DNA polymerase III alpha NTPase domain NtRootD5_16600 PF00815 Histidinol dehydrogenase NtRootD5_16610 PF03477 ATP cone domain NtRootD5_16630 PF00480 ROK family NtRootD5_16640 PF00557 Metallopeptidase family M24 NtRootD5_16660 PF02548 Ketopantoate hydroxymethyltransferase NtRootD5_16670 PF03951 Glutamine synthetase, beta-Grasp domain NtRootD5_16670 PF00120 Glutamine synthetase, catalytic domain NtRootD5_16680 PF03710 Glutamate-ammonia ligase adenylyltransferase NtRootD5_16680 PF08335 GlnD PII-uridylyltransferase NtRootD5_16690 PF00884 Sulfatase NtRootD5_16690 PF16347 Domain of unknown function (DUF4976) NtRootD5_16720 PF03951 Glutamine synthetase, beta-Grasp domain NtRootD5_16720 PF00120 Glutamine synthetase, catalytic domain NtRootD5_16750 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NtRootD5_16750 PF04055 Radical SAM superfamily NtRootD5_16760 PF03099 Biotin/lipoate A/B protein ligase family NtRootD5_16770 PF00069 Protein kinase domain NtRootD5_16770 PF13360 PQQ-like domain NtRootD5_16790 PF14685 Tricorn protease PDZ domain NtRootD5_16790 PF03572 Peptidase family S41 NtRootD5_16790 PF14684 Tricorn protease C1 domain NtRootD5_16790 PF07676 WD40-like Beta Propeller Repeat NtRootD5_16800 PF02566 OsmC-like protein NtRootD5_16830 PF02817 e3 binding domain NtRootD5_16830 PF00364 Biotin-requiring enzyme NtRootD5_16830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NtRootD5_16840 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_16840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NtRootD5_16850 PF02789 Cytosol aminopeptidase family, N-terminal domain NtRootD5_16850 PF00883 Cytosol aminopeptidase family, catalytic domain NtRootD5_16890 PF04542 Sigma-70 region 2 NtRootD5_16890 PF00140 Sigma-70 factor, region 1.2 NtRootD5_16890 PF04539 Sigma-70 region 3 NtRootD5_16890 PF04545 Sigma-70, region 4 NtRootD5_16910 PF01751 Toprim domain NtRootD5_16910 PF00204 DNA gyrase B NtRootD5_16910 PF00986 DNA gyrase B subunit, carboxyl terminus NtRootD5_16910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_16940 PF03965 Penicillinase repressor NtRootD5_16950 PF01654 Cytochrome bd terminal oxidase subunit I NtRootD5_16960 PF02322 Cytochrome bd terminal oxidase subunit II NtRootD5_16970 PF00005 ABC transporter NtRootD5_16970 PF00664 ABC transporter transmembrane region NtRootD5_17010 PF03989 DNA gyrase C-terminal domain, beta-propeller NtRootD5_17010 PF00521 DNA gyrase/topoisomerase IV, subunit A NtRootD5_17020 PF00583 Acetyltransferase (GNAT) family NtRootD5_17020 PF13380 CoA binding domain NtRootD5_17020 PF13607 Succinyl-CoA ligase like flavodoxin domain NtRootD5_17050 PF00265 Thymidine kinase NtRootD5_17060 PF11268 Protein of unknown function (DUF3071) NtRootD5_17100 PF00692 dUTPase NtRootD5_17140 PF02080 TrkA-C domain NtRootD5_17140 PF02254 TrkA-N domain NtRootD5_17150 PF02080 TrkA-C domain NtRootD5_17150 PF02254 TrkA-N domain NtRootD5_17160 PF13520 Amino acid permease NtRootD5_17170 PF01938 TRAM domain NtRootD5_17170 PF05958 tRNA (Uracil-5-)-methyltransferase NtRootD5_17180 PF00694 Aconitase C-terminal domain NtRootD5_17180 PF00330 Aconitase family (aconitate hydratase) NtRootD5_17190 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NtRootD5_17190 PF02780 Transketolase, C-terminal domain NtRootD5_17190 PF02779 Transketolase, pyrimidine binding domain NtRootD5_17230 PF00248 Aldo/keto reductase family NtRootD5_17240 PF00378 Enoyl-CoA hydratase/isomerase NtRootD5_17240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NtRootD5_17240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NtRootD5_17250 PF02803 Thiolase, C-terminal domain NtRootD5_17250 PF00108 Thiolase, N-terminal domain NtRootD5_17260 PF01612 3'-5' exonuclease NtRootD5_17260 PF00570 HRDC domain NtRootD5_17280 PF01212 Beta-eliminating lyase NtRootD5_17310 PF01641 SelR domain NtRootD5_17340 PF04073 Aminoacyl-tRNA editing domain NtRootD5_17350 PF02657 Fe-S metabolism associated domain NtRootD5_17360 PF00581 Rhodanese-like domain NtRootD5_17370 PF00308 Bacterial dnaA protein NtRootD5_17370 PF08299 Bacterial dnaA protein helix-turn-helix NtRootD5_17370 PF11638 DnaA N-terminal domain NtRootD5_17380 PF03594 Benzoate membrane transport protein NtRootD5_17400 PF13520 Amino acid permease NtRootD5_17420 PF01327 Polypeptide deformylase NtRootD5_17430 PF00551 Formyl transferase NtRootD5_17430 PF02911 Formyl transferase, C-terminal domain NtRootD5_17440 PF01189 16S rRNA methyltransferase RsmB/F NtRootD5_17440 PF01029 NusB family NtRootD5_17450 PF00834 Ribulose-phosphate 3 epimerase family NtRootD5_17470 PF01872 RibD C-terminal domain NtRootD5_17470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NtRootD5_17480 PF00677 Lumazine binding domain NtRootD5_17490 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NtRootD5_17490 PF00925 GTP cyclohydrolase II NtRootD5_17500 PF00925 GTP cyclohydrolase II NtRootD5_17500 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NtRootD5_17510 PF00885 6,7-dimethyl-8-ribityllumazine synthase NtRootD5_17520 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NtRootD5_17530 PF01634 ATP phosphoribosyltransferase NtRootD5_17530 PF08029 HisG, C-terminal domain NtRootD5_17540 PF00977 Histidine biosynthesis protein NtRootD5_17560 PF01502 Phosphoribosyl-AMP cyclohydrolase NtRootD5_17570 PF04715 Anthranilate synthase component I, N terminal region NtRootD5_17570 PF00425 chorismate binding enzyme NtRootD5_17600 PF00218 Indole-3-glycerol phosphate synthase NtRootD5_17610 PF00291 Pyridoxal-phosphate dependent enzyme NtRootD5_17620 PF00290 Tryptophan synthase alpha chain NtRootD5_17630 PF01790 Prolipoprotein diacylglyceryl transferase NtRootD5_17640 PF01645 Conserved region in glutamate synthase NtRootD5_17640 PF04898 Glutamate synthase central domain NtRootD5_17640 PF01493 GXGXG motif NtRootD5_17640 PF00310 Glutamine amidotransferases class-II NtRootD5_17650 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_17650 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NtRootD5_17660 PF02887 Pyruvate kinase, alpha/beta domain NtRootD5_17660 PF00224 Pyruvate kinase, barrel domain NtRootD5_17670 PF03861 ANTAR domain NtRootD5_17670 PF00072 Response regulator receiver domain NtRootD5_17700 PF02954 Bacterial regulatory protein, Fis family NtRootD5_17700 PF00072 Response regulator receiver domain NtRootD5_17700 PF00158 Sigma-54 interaction domain NtRootD5_17710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_17710 PF01842 ACT domain NtRootD5_17710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NtRootD5_17720 PF00202 Aminotransferase class-III NtRootD5_17730 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_17740 PF01968 Hydantoinase/oxoprolinase NtRootD5_17740 PF05378 Hydantoinase/oxoprolinase N-terminal region NtRootD5_17760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_17760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_17770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_17770 PF00205 Thiamine pyrophosphate enzyme, central domain NtRootD5_17770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NtRootD5_17780 PF00171 Aldehyde dehydrogenase family NtRootD5_17790 PF10518 TAT (twin-arginine translocation) pathway signal sequence NtRootD5_17790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_17810 PF00920 Dehydratase family NtRootD5_17820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_17840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_17840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_17860 PF00005 ABC transporter NtRootD5_17870 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_17880 PF13407 Periplasmic binding protein domain NtRootD5_17890 PF01565 FAD binding domain NtRootD5_17890 PF13183 4Fe-4S dicluster domain NtRootD5_17890 PF02913 FAD linked oxidases, C-terminal domain NtRootD5_17950 PF01261 Xylose isomerase-like TIM barrel NtRootD5_17960 PF08946 Osmosensory transporter coiled coil NtRootD5_17960 PF00083 Sugar (and other) transporter NtRootD5_17970 PF02224 Cytidylate kinase NtRootD5_17980 PF01081 KDPG and KHG aldolase NtRootD5_18000 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_18070 PF00106 short chain dehydrogenase NtRootD5_18090 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_18100 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_18100 PF14785 Maltose transport system permease protein MalF P2 domain NtRootD5_18120 PF03315 Serine dehydratase beta chain NtRootD5_18120 PF03313 Serine dehydratase alpha chain NtRootD5_18130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_18130 PF03466 LysR substrate binding domain NtRootD5_18150 PF07690 Major Facilitator Superfamily NtRootD5_18180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NtRootD5_18180 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_18190 PF01638 HxlR-like helix-turn-helix NtRootD5_18220 PF06736 Protein of unknown function (DUF1211) NtRootD5_18230 PF06628 Catalase-related immune-responsive NtRootD5_18230 PF18011 C-terminal domain found in long catalases NtRootD5_18230 PF00199 Catalase NtRootD5_18260 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_18280 PF00012 Hsp70 protein NtRootD5_18290 PF01025 GrpE NtRootD5_18300 PF00226 DnaJ domain NtRootD5_18300 PF01556 DnaJ C terminal domain NtRootD5_18320 PF07724 AAA domain (Cdc48 subfamily) NtRootD5_18320 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_18320 PF17871 AAA lid domain NtRootD5_18320 PF02861 Clp amino terminal domain, pathogenicity island component NtRootD5_18320 PF10431 C-terminal, D2-small domain, of ClpB protein NtRootD5_18330 PF00085 Thioredoxin NtRootD5_18340 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_18350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NtRootD5_18360 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_18370 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_18370 PF12911 N-terminal TM domain of oligopeptide transport permease C NtRootD5_18380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_18380 PF00005 ABC transporter NtRootD5_18390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_18390 PF00005 ABC transporter NtRootD5_18400 PF08244 Glycosyl hydrolases family 32 C terminal NtRootD5_18400 PF00251 Glycosyl hydrolases family 32 N-terminal domain NtRootD5_18410 PF00251 Glycosyl hydrolases family 32 N-terminal domain NtRootD5_18410 PF08244 Glycosyl hydrolases family 32 C terminal NtRootD5_18420 PF07729 FCD domain NtRootD5_18420 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_18440 PF01266 FAD dependent oxidoreductase NtRootD5_18470 PF01042 Endoribonuclease L-PSP NtRootD5_18520 PF07729 FCD domain NtRootD5_18520 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_18530 PF00171 Aldehyde dehydrogenase family NtRootD5_18540 PF00202 Aminotransferase class-III NtRootD5_18560 PF00005 ABC transporter NtRootD5_18570 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_18580 PF00497 Bacterial extracellular solute-binding proteins, family 3 NtRootD5_18600 PF01266 FAD dependent oxidoreductase NtRootD5_18610 PF00171 Aldehyde dehydrogenase family NtRootD5_18620 PF00180 Isocitrate/isopropylmalate dehydrogenase NtRootD5_18630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_18650 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_18650 PF00107 Zinc-binding dehydrogenase NtRootD5_18660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NtRootD5_18670 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_18680 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_18690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_18690 PF00005 ABC transporter NtRootD5_18700 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_18700 PF16295 Tetracyclin repressor-like, C-terminal domain NtRootD5_18710 PF00561 alpha/beta hydrolase fold NtRootD5_18720 PF00698 Acyl transferase domain NtRootD5_18720 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_18720 PF02801 Beta-ketoacyl synthase, C-terminal domain NtRootD5_18720 PF16197 Ketoacyl-synthetase C-terminal extension NtRootD5_18720 PF00109 Beta-ketoacyl synthase, N-terminal domain NtRootD5_18720 PF08659 KR domain NtRootD5_18720 PF00550 Phosphopantetheine attachment site NtRootD5_18720 PF14765 Polyketide synthase dehydratase NtRootD5_18790 PF00582 Universal stress protein family NtRootD5_18830 PF07730 Histidine kinase NtRootD5_18830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_18830 PF13492 GAF domain NtRootD5_18830 PF13185 GAF domain NtRootD5_18840 PF00582 Universal stress protein family NtRootD5_18860 PF00582 Universal stress protein family NtRootD5_18870 PF00582 Universal stress protein family NtRootD5_18880 PF10996 Beta-Casp domain NtRootD5_18880 PF00753 Metallo-beta-lactamase superfamily NtRootD5_18880 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NtRootD5_18900 PF00072 Response regulator receiver domain NtRootD5_18900 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_18910 PF13185 GAF domain NtRootD5_18910 PF07730 Histidine kinase NtRootD5_18910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_18910 PF13492 GAF domain NtRootD5_18940 PF13823 Alcohol dehydrogenase GroES-associated NtRootD5_18940 PF00107 Zinc-binding dehydrogenase NtRootD5_18940 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_18950 PF00403 Heavy-metal-associated domain NtRootD5_18970 PF07085 DRTGG domain NtRootD5_18970 PF01515 Phosphate acetyl/butaryl transferase NtRootD5_18980 PF00582 Universal stress protein family NtRootD5_18990 PF00690 Cation transporter/ATPase, N-terminus NtRootD5_18990 PF00689 Cation transporting ATPase, C-terminus NtRootD5_19010 PF00582 Universal stress protein family NtRootD5_19020 PF00871 Acetokinase family NtRootD5_19030 PF09364 XFP N-terminal domain NtRootD5_19030 PF09363 XFP C-terminal domain NtRootD5_19030 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase NtRootD5_19050 PF17866 AAA lid domain NtRootD5_19050 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_19140 PF00391 PEP-utilising enzyme, mobile domain NtRootD5_19140 PF02896 PEP-utilising enzyme, TIM barrel domain NtRootD5_19140 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NtRootD5_19150 PF03618 Kinase/pyrophosphorylase NtRootD5_19160 PF01037 Lrp/AsnC ligand binding domain NtRootD5_19170 PF10415 Fumarase C C-terminus NtRootD5_19170 PF00206 Lyase NtRootD5_19180 PF00171 Aldehyde dehydrogenase family NtRootD5_19190 PF00742 Homoserine dehydrogenase NtRootD5_19190 PF03447 Homoserine dehydrogenase, NAD binding domain NtRootD5_19190 PF01842 ACT domain NtRootD5_19230 PF04303 PrpF protein NtRootD5_19240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_19240 PF03466 LysR substrate binding domain NtRootD5_19250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_19250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_19270 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_19280 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_19290 PF01547 Bacterial extracellular solute-binding protein NtRootD5_19300 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_19320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NtRootD5_19320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NtRootD5_19330 PF00501 AMP-binding enzyme NtRootD5_19340 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NtRootD5_19360 PF00999 Sodium/hydrogen exchanger family NtRootD5_19370 PF04679 ATP dependent DNA ligase C terminal region NtRootD5_19370 PF01068 ATP dependent DNA ligase domain NtRootD5_19370 PF13298 DNA polymerase Ligase (LigD) NtRootD5_19390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_19390 PF00205 Thiamine pyrophosphate enzyme, central domain NtRootD5_19390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NtRootD5_19400 PF17755 UvrA DNA-binding domain NtRootD5_19420 PF00472 RF-1 domain NtRootD5_19420 PF03462 PCRF domain NtRootD5_19510 PF07687 Peptidase dimerisation domain NtRootD5_19510 PF01546 Peptidase family M20/M25/M40 NtRootD5_19520 PF00171 Aldehyde dehydrogenase family NtRootD5_19530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NtRootD5_19530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NtRootD5_19540 PF01418 Helix-turn-helix domain, rpiR family NtRootD5_19540 PF01380 SIS domain NtRootD5_19550 PF01494 FAD binding domain NtRootD5_19550 PF07976 Phenol hydroxylase, C-terminal dimerisation domain NtRootD5_19560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NtRootD5_19560 PF01367 5'-3' exonuclease, C-terminal SAM fold NtRootD5_19580 PF03795 YCII-related domain NtRootD5_19590 PF04542 Sigma-70 region 2 NtRootD5_19590 PF08281 Sigma-70, region 4 NtRootD5_19620 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_19620 PF00107 Zinc-binding dehydrogenase NtRootD5_19630 PF00271 Helicase conserved C-terminal domain NtRootD5_19630 PF04408 Helicase associated domain (HA2) NtRootD5_19630 PF08482 ATP-dependent helicase C-terminal NtRootD5_19630 PF00270 DEAD/DEAH box helicase NtRootD5_19640 PF01979 Amidohydrolase family NtRootD5_19680 PF00679 Elongation factor G C-terminus NtRootD5_19680 PF14492 Elongation Factor G, domain II NtRootD5_19680 PF03764 Elongation factor G, domain IV NtRootD5_19680 PF00009 Elongation factor Tu GTP binding domain NtRootD5_19680 PF03144 Elongation factor Tu domain 2 NtRootD5_19710 PF01300 Telomere recombination NtRootD5_19730 PF00005 ABC transporter NtRootD5_19750 PF01869 BadF/BadG/BcrA/BcrD ATPase family NtRootD5_19760 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_19760 PF07702 UTRA domain NtRootD5_19770 PF09339 IclR helix-turn-helix domain NtRootD5_19770 PF01614 Bacterial transcriptional regulator NtRootD5_19790 PF00890 FAD binding domain NtRootD5_19810 PF00083 Sugar (and other) transporter NtRootD5_19810 PF07690 Major Facilitator Superfamily NtRootD5_19830 PF00266 Aminotransferase class-V NtRootD5_19840 PF03301 Tryptophan 2,3-dioxygenase NtRootD5_19860 PF01384 Phosphate transporter family NtRootD5_19910 PF03061 Thioesterase superfamily NtRootD5_19920 PF01367 5'-3' exonuclease, C-terminal SAM fold NtRootD5_19920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NtRootD5_19920 PF00476 DNA polymerase family A NtRootD5_19930 PF13530 Sterol carrier protein domain NtRootD5_19930 PF17668 Acetyltransferase (GNAT) domain NtRootD5_19950 PF00575 S1 RNA binding domain NtRootD5_19960 PF01205 Uncharacterized protein family UPF0029 NtRootD5_19960 PF09186 Domain of unknown function (DUF1949) NtRootD5_19970 PF01121 Dephospho-CoA kinase NtRootD5_19970 PF04229 GrpB protein NtRootD5_19980 PF00271 Helicase conserved C-terminal domain NtRootD5_19980 PF04851 Type III restriction enzyme, res subunit NtRootD5_19980 PF02151 UvrB/uvrC motif NtRootD5_19980 PF12344 Ultra-violet resistance protein B NtRootD5_19980 PF17757 UvrB interaction domain NtRootD5_19990 PF03741 Integral membrane protein TerC family NtRootD5_20000 PF07690 Major Facilitator Superfamily NtRootD5_20010 PF00561 alpha/beta hydrolase fold NtRootD5_20020 PF13673 Acetyltransferase (GNAT) domain NtRootD5_20030 PF02515 CoA-transferase family III NtRootD5_20070 PF17760 UvrA interaction domain NtRootD5_20070 PF00005 ABC transporter NtRootD5_20070 PF17755 UvrA DNA-binding domain NtRootD5_20080 PF13419 Haloacid dehalogenase-like hydrolase NtRootD5_20090 PF01553 Acyltransferase NtRootD5_20090 PF00501 AMP-binding enzyme NtRootD5_20100 PF08459 UvrC Helix-hairpin-helix N-terminal NtRootD5_20100 PF12826 Helix-hairpin-helix motif NtRootD5_20100 PF02151 UvrB/uvrC motif NtRootD5_20100 PF01541 GIY-YIG catalytic domain NtRootD5_20110 PF03668 P-loop ATPase protein family NtRootD5_20120 PF01933 Uncharacterised protein family UPF0052 NtRootD5_20130 PF10298 WhiA N-terminal LAGLIDADG-like domain NtRootD5_20130 PF02650 WhiA C-terminal HTH domain NtRootD5_20130 PF14527 WhiA LAGLIDADG-like domain NtRootD5_20140 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NtRootD5_20140 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NtRootD5_20150 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NtRootD5_20150 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NtRootD5_20160 PF00162 Phosphoglycerate kinase NtRootD5_20170 PF00121 Triosephosphate isomerase NtRootD5_20180 PF03840 Preprotein translocase SecG subunit NtRootD5_20200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NtRootD5_20220 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NtRootD5_20220 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NtRootD5_20230 PF00342 Phosphoglucose isomerase NtRootD5_20240 PF00923 Transaldolase/Fructose-6-phosphate aldolase NtRootD5_20250 PF02779 Transketolase, pyrimidine binding domain NtRootD5_20250 PF02780 Transketolase, C-terminal domain NtRootD5_20250 PF00456 Transketolase, thiamine diphosphate binding domain NtRootD5_20260 PF01040 UbiA prenyltransferase family NtRootD5_20300 PF00005 ABC transporter NtRootD5_20300 PF02687 FtsX-like permease family NtRootD5_20300 PF12704 MacB-like periplasmic core domain NtRootD5_20310 PF02628 Cytochrome oxidase assembly protein NtRootD5_20330 PF00005 ABC transporter NtRootD5_20350 PF01458 Uncharacterized protein family (UPF0051) NtRootD5_20360 PF01458 Uncharacterized protein family (UPF0051) NtRootD5_20380 PF00005 ABC transporter NtRootD5_20390 PF01883 Iron-sulfur cluster assembly protein NtRootD5_20400 PF04228 Putative neutral zinc metallopeptidase NtRootD5_20410 PF00501 AMP-binding enzyme NtRootD5_20410 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_20420 PF02803 Thiolase, C-terminal domain NtRootD5_20420 PF00108 Thiolase, N-terminal domain NtRootD5_20440 PF00005 ABC transporter NtRootD5_20450 PF02632 BioY family NtRootD5_20460 PF00005 ABC transporter NtRootD5_20460 PF12848 ABC transporter NtRootD5_20460 PF16326 ABC transporter C-terminal domain NtRootD5_20470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NtRootD5_20470 PF04073 Aminoacyl-tRNA editing domain NtRootD5_20470 PF03129 Anticodon binding domain NtRootD5_20530 PF00005 ABC transporter NtRootD5_20570 PF00005 ABC transporter NtRootD5_20590 PF00588 SpoU rRNA Methylase family NtRootD5_20600 PF01197 Ribosomal protein L31 NtRootD5_20610 PF03099 Biotin/lipoate A/B protein ligase family NtRootD5_20610 PF10437 Bacterial lipoate protein ligase C-terminus NtRootD5_20640 PF11838 ERAP1-like C-terminal domain NtRootD5_20640 PF01433 Peptidase family M1 domain NtRootD5_20650 PF03601 Conserved hypothetical protein 698 NtRootD5_20660 PF04174 A circularly permuted ATPgrasp NtRootD5_20680 PF08379 Bacterial transglutaminase-like N-terminal region NtRootD5_20680 PF01841 Transglutaminase-like superfamily NtRootD5_20690 PF00106 short chain dehydrogenase NtRootD5_20700 PF00483 Nucleotidyl transferase NtRootD5_20720 PF13439 Glycosyltransferase Family 4 NtRootD5_20720 PF00534 Glycosyl transferases group 1 NtRootD5_20750 PF00108 Thiolase, N-terminal domain NtRootD5_20750 PF02803 Thiolase, C-terminal domain NtRootD5_20780 PF07687 Peptidase dimerisation domain NtRootD5_20780 PF01546 Peptidase family M20/M25/M40 NtRootD5_20820 PF02397 Bacterial sugar transferase NtRootD5_20830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_20830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_20840 PF16363 GDP-mannose 4,6 dehydratase NtRootD5_20850 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NtRootD5_20970 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NtRootD5_20980 PF16363 GDP-mannose 4,6 dehydratase NtRootD5_20990 PF00483 Nucleotidyl transferase NtRootD5_21000 PF00248 Aldo/keto reductase family NtRootD5_21010 PF02673 Bacitracin resistance protein BacA NtRootD5_21020 PF01406 tRNA synthetases class I (C) catalytic domain NtRootD5_21040 PF13419 Haloacid dehalogenase-like hydrolase NtRootD5_21050 PF00571 CBS domain NtRootD5_21050 PF02163 Peptidase family M50 NtRootD5_21060 PF08704 tRNA methyltransferase complex GCD14 subunit NtRootD5_21070 PF17758 Proteasomal ATPase OB N-terminal domain NtRootD5_21070 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_21070 PF16450 Proteasomal ATPase OB C-terminal domain NtRootD5_21080 PF03136 Pup-ligase protein NtRootD5_21090 PF05639 Pup-like protein NtRootD5_21100 PF00227 Proteasome subunit NtRootD5_21110 PF00227 Proteasome subunit NtRootD5_21120 PF03136 Pup-ligase protein NtRootD5_21130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NtRootD5_21140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NtRootD5_21150 PF13280 WYL domain NtRootD5_21170 PF02416 mttA/Hcf106 family NtRootD5_21180 PF00902 Sec-independent protein translocase protein (TatC) NtRootD5_21190 PF00271 Helicase conserved C-terminal domain NtRootD5_21190 PF08148 DSHCT (NUC185) domain NtRootD5_21190 PF00270 DEAD/DEAH box helicase NtRootD5_21200 PF07969 Amidohydrolase family NtRootD5_21210 PF00535 Glycosyl transferase family 2 NtRootD5_21220 PF13397 RNA polymerase-binding protein NtRootD5_21230 PF01145 SPFH domain / Band 7 family NtRootD5_21260 PF07676 WD40-like Beta Propeller Repeat NtRootD5_21260 PF00326 Prolyl oligopeptidase family NtRootD5_21270 PF01327 Polypeptide deformylase NtRootD5_21300 PF01494 FAD binding domain NtRootD5_21320 PF02797 Chalcone and stilbene synthases, C-terminal domain NtRootD5_21320 PF00195 Chalcone and stilbene synthases, N-terminal domain NtRootD5_21330 PF00005 ABC transporter NtRootD5_21330 PF17755 UvrA DNA-binding domain NtRootD5_21330 PF17760 UvrA interaction domain NtRootD5_21410 PF00591 Glycosyl transferase family, a/b domain NtRootD5_21410 PF02885 Glycosyl transferase family, helical bundle domain NtRootD5_21420 PF00510 Cytochrome c oxidase subunit III NtRootD5_21430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NtRootD5_21430 PF00034 Cytochrome c NtRootD5_21440 PF00355 Rieske [2Fe-2S] domain NtRootD5_21450 PF13631 Cytochrome b(N-terminal)/b6/petB NtRootD5_21470 PF07729 FCD domain NtRootD5_21470 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_21480 PF00381 PTS HPr component phosphorylation site NtRootD5_21490 PF12270 Cytochrome c oxidase subunit IV NtRootD5_21500 PF00115 Cytochrome C and Quinol oxidase polypeptide I NtRootD5_21510 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NtRootD5_21520 PF01521 Iron-sulphur cluster biosynthesis NtRootD5_21530 PF07687 Peptidase dimerisation domain NtRootD5_21530 PF01546 Peptidase family M20/M25/M40 NtRootD5_21540 PF11241 Protein of unknown function (DUF3043) NtRootD5_21550 PF01180 Dihydroorotate dehydrogenase NtRootD5_21560 PF00890 FAD binding domain NtRootD5_21590 PF01255 Putative undecaprenyl diphosphate synthase NtRootD5_21600 PF02565 Recombination protein O C terminal NtRootD5_21600 PF11967 Recombination protein O N terminal NtRootD5_21610 PF08502 LeuA allosteric (dimerisation) domain NtRootD5_21610 PF00682 HMGL-like NtRootD5_21620 PF05649 Peptidase family M13 NtRootD5_21620 PF01431 Peptidase family M13 NtRootD5_21630 PF03816 Cell envelope-related transcriptional attenuator domain NtRootD5_21640 PF07650 KH domain NtRootD5_21640 PF01926 50S ribosome-binding GTPase NtRootD5_21650 PF00571 CBS domain NtRootD5_21650 PF03471 Transporter associated domain NtRootD5_21650 PF01595 Cyclin M transmembrane N-terminal domain NtRootD5_21660 PF02130 Uncharacterized protein family UPF0054 NtRootD5_21670 PF02562 PhoH-like protein NtRootD5_21690 PF04452 RNA methyltransferase NtRootD5_21700 PF00684 DnaJ central domain NtRootD5_21700 PF00226 DnaJ domain NtRootD5_21700 PF01556 DnaJ C terminal domain NtRootD5_21710 PF08220 DeoR-like helix-turn-helix domain NtRootD5_21710 PF01628 HrcA protein C terminal domain NtRootD5_21740 PF04055 Radical SAM superfamily NtRootD5_21740 PF06969 HemN C-terminal domain NtRootD5_21750 PF06421 GTP-binding protein LepA C-terminus NtRootD5_21750 PF00009 Elongation factor Tu GTP binding domain NtRootD5_21750 PF00679 Elongation factor G C-terminus NtRootD5_21770 PF01649 Ribosomal protein S20 NtRootD5_21820 PF02645 Uncharacterised protein, DegV family COG1307 NtRootD5_21830 PF08264 Anticodon-binding domain of tRNA NtRootD5_21830 PF00133 tRNA synthetases class I (I, L, M and V) NtRootD5_21830 PF13603 Leucyl-tRNA synthetase, Domain 2 NtRootD5_21830 PF09334 tRNA synthetases class I (M) NtRootD5_21840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NtRootD5_21840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NtRootD5_21850 PF00230 Major intrinsic protein NtRootD5_21860 PF01266 FAD dependent oxidoreductase NtRootD5_21860 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NtRootD5_21880 PF04198 Putative sugar-binding domain NtRootD5_21890 PF00248 Aldo/keto reductase family NtRootD5_21910 PF13439 Glycosyltransferase Family 4 NtRootD5_21920 PF17764 3′ DNA-binding domain (3′BD) NtRootD5_21930 PF02773 S-adenosylmethionine synthetase, C-terminal domain NtRootD5_21930 PF02772 S-adenosylmethionine synthetase, central domain NtRootD5_21930 PF00438 S-adenosylmethionine synthetase, N-terminal domain NtRootD5_21940 PF04127 DNA / pantothenate metabolism flavoprotein NtRootD5_21940 PF02441 Flavoprotein NtRootD5_21950 PF01192 RNA polymerase Rpb6 NtRootD5_21960 PF00625 Guanylate kinase NtRootD5_21980 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NtRootD5_21990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NtRootD5_21990 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NtRootD5_21990 PF02142 MGS-like domain NtRootD5_22000 PF00117 Glutamine amidotransferase class-I NtRootD5_22000 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NtRootD5_22020 PF01979 Amidohydrolase family NtRootD5_22030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NtRootD5_22030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NtRootD5_22040 PF00156 Phosphoribosyl transferase domain NtRootD5_22070 PF01029 NusB family NtRootD5_22080 PF09285 Elongation factor P, C-terminal NtRootD5_22080 PF08207 Elongation factor P (EF-P) KOW-like domain NtRootD5_22080 PF01132 Elongation factor P (EF-P) OB domain NtRootD5_22100 PF01761 3-dehydroquinate synthase NtRootD5_22110 PF01202 Shikimate kinase NtRootD5_22120 PF01264 Chorismate synthase NtRootD5_22130 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NtRootD5_22130 PF01488 Shikimate / quinate 5-dehydrogenase NtRootD5_22130 PF08501 Shikimate dehydrogenase substrate binding domain NtRootD5_22150 PF03652 Holliday junction resolvase NtRootD5_22160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NtRootD5_22160 PF02272 DHHA1 domain NtRootD5_22160 PF01411 tRNA synthetases class II (A) NtRootD5_22190 PF00163 Ribosomal protein S4/S9 N-terminal domain NtRootD5_22190 PF01479 S4 domain NtRootD5_22200 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_22200 PF16193 AAA C-terminal domain NtRootD5_22200 PF12002 MgsA AAA+ ATPase C terminal NtRootD5_22230 PF02938 GAD domain NtRootD5_22230 PF01336 OB-fold nucleic acid binding domain NtRootD5_22230 PF00152 tRNA synthetases class II (D, K and N) NtRootD5_22240 PF13393 Histidyl-tRNA synthetase NtRootD5_22240 PF03129 Anticodon binding domain NtRootD5_22260 PF03993 Domain of Unknown Function (DUF349) NtRootD5_22280 PF02824 TGS domain NtRootD5_22280 PF04607 Region found in RelA / SpoT proteins NtRootD5_22280 PF13291 ACT domain NtRootD5_22290 PF02355 Protein export membrane protein NtRootD5_22290 PF07549 SecD/SecF GG Motif NtRootD5_22300 PF02355 Protein export membrane protein NtRootD5_22300 PF07549 SecD/SecF GG Motif NtRootD5_22320 PF05496 Holliday junction DNA helicase RuvB P-loop domain NtRootD5_22320 PF17864 RuvB AAA lid domain NtRootD5_22320 PF05491 RuvB C-terminal winged helix domain NtRootD5_22330 PF07499 RuvA, C-terminal domain NtRootD5_22330 PF01330 RuvA N terminal domain NtRootD5_22340 PF02075 Crossover junction endodeoxyribonuclease RuvC NtRootD5_22350 PF01709 Transcriptional regulator NtRootD5_22360 PF01174 SNO glutamine amidotransferase family NtRootD5_22370 PF08353 Domain of unknown function (DUF1727) NtRootD5_22370 PF08245 Mur ligase middle domain NtRootD5_22380 PF07685 CobB/CobQ-like glutamine amidotransferase domain NtRootD5_22400 PF01432 Peptidase family M3 NtRootD5_22410 PF01680 SOR/SNZ family NtRootD5_22420 PF01066 CDP-alcohol phosphatidyltransferase NtRootD5_22430 PF01230 HIT domain NtRootD5_22440 PF03129 Anticodon binding domain NtRootD5_22440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NtRootD5_22440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NtRootD5_22450 PF02811 PHP domain NtRootD5_22450 PF14579 Helix-hairpin-helix motif NtRootD5_22450 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NtRootD5_22450 PF07733 Bacterial DNA polymerase III alpha NTPase domain NtRootD5_22470 PF01494 FAD binding domain NtRootD5_22500 PF02586 SOS response associated peptidase (SRAP) NtRootD5_22510 PF00462 Glutaredoxin NtRootD5_22520 PF00107 Zinc-binding dehydrogenase NtRootD5_22520 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_22530 PF00753 Metallo-beta-lactamase superfamily NtRootD5_22540 PF00384 Molybdopterin oxidoreductase NtRootD5_22540 PF01568 Molydopterin dinucleotide binding domain NtRootD5_22590 PF01494 FAD binding domain NtRootD5_22620 PF17761 DUF1016 N-terminal domain NtRootD5_22620 PF06250 YhcG PDDEXK nuclease domain NtRootD5_22640 PF00005 ABC transporter NtRootD5_22640 PF08402 TOBE domain NtRootD5_22650 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_22670 PF00268 Ribonucleotide reductase, small chain NtRootD5_22680 PF08343 Ribonucleotide reductase N-terminal NtRootD5_22680 PF02867 Ribonucleotide reductase, barrel domain NtRootD5_22680 PF00317 Ribonucleotide reductase, all-alpha domain NtRootD5_22690 PF07972 NrdI Flavodoxin like NtRootD5_22710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_22710 PF03466 LysR substrate binding domain NtRootD5_22780 PF07726 ATPase family associated with various cellular activities (AAA) NtRootD5_22780 PF17863 AAA lid domain NtRootD5_22800 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_22810 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_22830 PF00480 ROK family NtRootD5_22840 PF05175 Methyltransferase small domain NtRootD5_22860 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_22890 PF01467 Cytidylyltransferase-like NtRootD5_22910 PF00171 Aldehyde dehydrogenase family NtRootD5_22920 PF00696 Amino acid kinase family NtRootD5_22920 PF01472 PUA domain NtRootD5_22930 PF09269 Domain of unknown function (DUF1967) NtRootD5_22930 PF01018 GTP1/OBG NtRootD5_22930 PF01926 50S ribosome-binding GTPase NtRootD5_22940 PF01016 Ribosomal L27 protein NtRootD5_22950 PF00829 Ribosomal prokaryotic L21 protein NtRootD5_22960 PF02581 Thiamine monophosphate synthase NtRootD5_22960 PF03070 TENA/THI-4/PQQC family NtRootD5_22960 PF08543 Phosphomethylpyrimidine kinase NtRootD5_22970 PF10150 Ribonuclease E/G family NtRootD5_22990 PF00334 Nucleoside diphosphate kinase NtRootD5_23010 PF02875 Mur ligase family, glutamate ligase domain NtRootD5_23010 PF08245 Mur ligase middle domain NtRootD5_23020 PF08264 Anticodon-binding domain of tRNA NtRootD5_23020 PF00133 tRNA synthetases class I (I, L, M and V) NtRootD5_23040 PF00106 short chain dehydrogenase NtRootD5_23050 PF00133 tRNA synthetases class I (I, L, M and V) NtRootD5_23050 PF08264 Anticodon-binding domain of tRNA NtRootD5_23060 PF06827 Zinc finger found in FPG and IleRS NtRootD5_23060 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NtRootD5_23070 PF01323 DSBA-like thioredoxin domain NtRootD5_23080 PF10431 C-terminal, D2-small domain, of ClpB protein NtRootD5_23080 PF07724 AAA domain (Cdc48 subfamily) NtRootD5_23080 PF06689 ClpX C4-type zinc finger NtRootD5_23090 PF00574 Clp protease NtRootD5_23100 PF00574 Clp protease NtRootD5_23110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NtRootD5_23110 PF05698 Bacterial trigger factor protein (TF) C-terminus NtRootD5_23110 PF05697 Bacterial trigger factor protein (TF) NtRootD5_23120 PF06827 Zinc finger found in FPG and IleRS NtRootD5_23120 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NtRootD5_23120 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NtRootD5_23130 PF02502 Ribose/Galactose Isomerase NtRootD5_23150 PF01433 Peptidase family M1 domain NtRootD5_23150 PF11838 ERAP1-like C-terminal domain NtRootD5_23180 PF00924 Mechanosensitive ion channel NtRootD5_23190 PF01152 Bacterial-like globin NtRootD5_23220 PF12848 ABC transporter NtRootD5_23220 PF00005 ABC transporter NtRootD5_23260 PF00436 Single-strand binding protein family NtRootD5_23290 PF00929 Exonuclease NtRootD5_23300 PF01327 Polypeptide deformylase NtRootD5_23340 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NtRootD5_23340 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NtRootD5_23350 PF03883 Peroxide stress protein YaaA NtRootD5_23360 PF02591 C4-type zinc ribbon domain NtRootD5_23370 PF01784 NIF3 (NGG1p interacting factor 3) NtRootD5_23380 PF01625 Peptide methionine sulfoxide reductase NtRootD5_23390 PF00291 Pyridoxal-phosphate dependent enzyme NtRootD5_23400 PF00132 Bacterial transferase hexapeptide (six repeats) NtRootD5_23410 PF00106 short chain dehydrogenase NtRootD5_23420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NtRootD5_23420 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NtRootD5_23430 PF07729 FCD domain NtRootD5_23430 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_23440 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_23440 PF00107 Zinc-binding dehydrogenase NtRootD5_23460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NtRootD5_23460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NtRootD5_23470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_23480 PF01757 Acyltransferase family NtRootD5_23490 PF00083 Sugar (and other) transporter NtRootD5_23490 PF07690 Major Facilitator Superfamily NtRootD5_23500 PF09339 IclR helix-turn-helix domain NtRootD5_23500 PF01614 Bacterial transcriptional regulator NtRootD5_23530 PF02146 Sir2 family NtRootD5_23540 PF00578 AhpC/TSA family NtRootD5_23550 PF11253 Protein of unknown function (DUF3052) NtRootD5_23560 PF17831 Pyruvate dehydrogenase E1 component middle domain NtRootD5_23560 PF00456 Transketolase, thiamine diphosphate binding domain NtRootD5_23570 PF13556 PucR C-terminal helix-turn-helix domain NtRootD5_23570 PF17853 GGDEF-like domain NtRootD5_23580 PF00698 Acyl transferase domain NtRootD5_23590 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NtRootD5_23590 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NtRootD5_23600 PF00550 Phosphopantetheine attachment site NtRootD5_23610 PF02801 Beta-ketoacyl synthase, C-terminal domain NtRootD5_23610 PF00109 Beta-ketoacyl synthase, N-terminal domain NtRootD5_23630 PF02899 Phage integrase, N-terminal SAM-like domain NtRootD5_23630 PF00589 Phage integrase family NtRootD5_23650 PF01078 Magnesium chelatase, subunit ChlI NtRootD5_23650 PF13335 Magnesium chelatase, subunit ChlI C-terminal NtRootD5_23660 PF02021 Uncharacterised protein family UPF0102 NtRootD5_23670 PF10611 Protein of unknown function (DUF2469) NtRootD5_23680 PF01351 Ribonuclease HII NtRootD5_23690 PF10502 Signal peptidase, peptidase S26 NtRootD5_23700 PF10502 Signal peptidase, peptidase S26 NtRootD5_23710 PF01245 Ribosomal protein L19 NtRootD5_23720 PF01746 tRNA (Guanine-1)-methyltransferase NtRootD5_23730 PF01782 RimM N-terminal domain NtRootD5_23750 PF00886 Ribosomal protein S16 NtRootD5_23770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NtRootD5_23780 PF01979 Amidohydrolase family NtRootD5_23790 PF01964 Radical SAM ThiC family NtRootD5_23790 PF13667 ThiC-associated domain NtRootD5_23810 PF02881 SRP54-type protein, helical bundle domain NtRootD5_23810 PF00448 SRP54-type protein, GTPase domain NtRootD5_23810 PF02978 Signal peptide binding domain NtRootD5_23820 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NtRootD5_23820 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NtRootD5_23830 PF00543 Nitrogen regulatory protein P-II NtRootD5_23840 PF00909 Ammonium Transporter Family NtRootD5_23850 PF07690 Major Facilitator Superfamily NtRootD5_23860 PF02881 SRP54-type protein, helical bundle domain NtRootD5_23860 PF00448 SRP54-type protein, GTPase domain NtRootD5_23870 PF02463 RecF/RecN/SMC N terminal domain NtRootD5_23870 PF06470 SMC proteins Flexible Hinge Domain NtRootD5_23920 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NtRootD5_23920 PF06827 Zinc finger found in FPG and IleRS NtRootD5_23920 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NtRootD5_23930 PF14622 Ribonuclease-III-like NtRootD5_23930 PF00035 Double-stranded RNA binding motif NtRootD5_23940 PF01783 Ribosomal L32p protein family NtRootD5_23950 PF02620 Large ribosomal RNA subunit accumulation protein YceD NtRootD5_23960 PF01467 Cytidylyltransferase-like NtRootD5_23970 PF00155 Aminotransferase class I and II NtRootD5_24000 PF17191 RecG wedge domain NtRootD5_24000 PF00270 DEAD/DEAH box helicase NtRootD5_24000 PF00271 Helicase conserved C-terminal domain NtRootD5_24010 PF13684 Dihydroxyacetone kinase family NtRootD5_24010 PF02734 DAK2 domain NtRootD5_24020 PF00586 AIR synthase related protein, N-terminal domain NtRootD5_24020 PF02769 AIR synthase related protein, C-terminal domain NtRootD5_24040 PF07478 D-ala D-ala ligase C-terminus NtRootD5_24040 PF01820 D-ala D-ala ligase N-terminus NtRootD5_24050 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NtRootD5_24050 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NtRootD5_24070 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NtRootD5_24080 PF00694 Aconitase C-terminal domain NtRootD5_24090 PF00330 Aconitase family (aconitate hydratase) NtRootD5_24100 PF01614 Bacterial transcriptional regulator NtRootD5_24100 PF09339 IclR helix-turn-helix domain NtRootD5_24150 PF00749 tRNA synthetases class I (E and Q), catalytic domain NtRootD5_24160 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_24170 PF16123 Hydroxyacylglutathione hydrolase C-terminus NtRootD5_24170 PF00753 Metallo-beta-lactamase superfamily NtRootD5_24190 PF01063 Amino-transferase class IV NtRootD5_24200 PF00180 Isocitrate/isopropylmalate dehydrogenase NtRootD5_24210 PF07730 Histidine kinase NtRootD5_24220 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_24220 PF00072 Response regulator receiver domain NtRootD5_24230 PF12704 MacB-like periplasmic core domain NtRootD5_24230 PF02687 FtsX-like permease family NtRootD5_24230 PF00005 ABC transporter NtRootD5_24250 PF08264 Anticodon-binding domain of tRNA NtRootD5_24250 PF09334 tRNA synthetases class I (M) NtRootD5_24260 PF00005 ABC transporter NtRootD5_24260 PF02687 FtsX-like permease family NtRootD5_24260 PF12704 MacB-like periplasmic core domain NtRootD5_24290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NtRootD5_24290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_24290 PF01842 ACT domain NtRootD5_24300 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NtRootD5_24300 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NtRootD5_24310 PF10369 Small subunit of acetolactate synthase NtRootD5_24320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_24320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NtRootD5_24320 PF00205 Thiamine pyrophosphate enzyme, central domain NtRootD5_24330 PF00920 Dehydratase family NtRootD5_24340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_24340 PF03466 LysR substrate binding domain NtRootD5_24350 PF00573 Ribosomal protein L4/L1 family NtRootD5_24360 PF07995 Glucose / Sorbosone dehydrogenase NtRootD5_24380 PF00578 AhpC/TSA family NtRootD5_24390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NtRootD5_24400 PF06039 Malate:quinone oxidoreductase (Mqo) NtRootD5_24410 PF00873 AcrB/AcrD/AcrF family NtRootD5_24420 PF00296 Luciferase-like monooxygenase NtRootD5_24440 PF08379 Bacterial transglutaminase-like N-terminal region NtRootD5_24440 PF01841 Transglutaminase-like superfamily NtRootD5_24480 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_24500 PF00266 Aminotransferase class-V NtRootD5_24510 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NtRootD5_24510 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NtRootD5_24520 PF00890 FAD binding domain NtRootD5_24520 PF02910 Fumarate reductase flavoprotein C-term NtRootD5_24530 PF02445 Quinolinate synthetase A protein NtRootD5_24540 PF00293 NUDIX domain NtRootD5_24550 PF01037 Lrp/AsnC ligand binding domain NtRootD5_24560 PF00324 Amino acid permease NtRootD5_24570 PF00676 Dehydrogenase E1 component NtRootD5_24580 PF02780 Transketolase, C-terminal domain NtRootD5_24580 PF02779 Transketolase, pyrimidine binding domain NtRootD5_24590 PF00364 Biotin-requiring enzyme NtRootD5_24590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NtRootD5_24590 PF02817 e3 binding domain NtRootD5_24620 PF00156 Phosphoribosyl transferase domain NtRootD5_24620 PF05139 Erythromycin esterase NtRootD5_24630 PF00083 Sugar (and other) transporter NtRootD5_24630 PF07690 Major Facilitator Superfamily NtRootD5_24640 PF09339 IclR helix-turn-helix domain NtRootD5_24640 PF01614 Bacterial transcriptional regulator NtRootD5_24650 PF17409 MoaF C-terminal domain NtRootD5_24650 PF10703 MoaF N-terminal domain NtRootD5_24680 PF14525 AraC-binding-like domain NtRootD5_24690 PF16347 Domain of unknown function (DUF4976) NtRootD5_24690 PF00884 Sulfatase NtRootD5_24700 PF00005 ABC transporter NtRootD5_24710 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_24720 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_24740 PF13382 Adenine deaminase C-terminal domain NtRootD5_24740 PF01979 Amidohydrolase family NtRootD5_24770 PF13476 AAA domain NtRootD5_24780 PF12320 Type 5 capsule protein repressor C-terminal domain NtRootD5_24780 PF00149 Calcineurin-like phosphoesterase NtRootD5_24790 PF00230 Major intrinsic protein NtRootD5_24810 PF02656 Domain of unknown function (DUF202) NtRootD5_24860 PF00005 ABC transporter NtRootD5_24880 PF09335 SNARE associated Golgi protein NtRootD5_24890 PF01725 Ham1 family NtRootD5_24900 PF03725 3' exoribonuclease family, domain 2 NtRootD5_24900 PF01138 3' exoribonuclease family, domain 1 NtRootD5_24910 PF12706 Beta-lactamase superfamily domain NtRootD5_24910 PF00753 Metallo-beta-lactamase superfamily NtRootD5_24920 PF01177 Asp/Glu/Hydantoin racemase NtRootD5_24940 PF02617 ATP-dependent Clp protease adaptor protein ClpS NtRootD5_24950 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NtRootD5_24950 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NtRootD5_24960 PF00857 Isochorismatase family NtRootD5_24970 PF04851 Type III restriction enzyme, res subunit NtRootD5_24990 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NtRootD5_25010 PF00005 ABC transporter NtRootD5_25020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NtRootD5_25080 PF01939 Endonuclease NucS NtRootD5_25090 PF01979 Amidohydrolase family NtRootD5_25100 PF00313 'Cold-shock' DNA-binding domain NtRootD5_25110 PF09924 Uncharacterised conserved protein (DUF2156) NtRootD5_25120 PF00756 Putative esterase NtRootD5_25140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NtRootD5_25150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NtRootD5_25150 PF02874 ATP synthase alpha/beta family, beta-barrel domain NtRootD5_25160 PF00231 ATP synthase NtRootD5_25170 PF00306 ATP synthase alpha/beta chain, C terminal domain NtRootD5_25170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NtRootD5_25170 PF02874 ATP synthase alpha/beta family, beta-barrel domain NtRootD5_25180 PF00213 ATP synthase delta (OSCP) subunit NtRootD5_25190 PF00430 ATP synthase B/B' CF(0) NtRootD5_25200 PF00137 ATP synthase subunit C NtRootD5_25210 PF00119 ATP synthase A chain NtRootD5_25250 PF00953 Glycosyl transferase family 4 NtRootD5_25280 PF01300 Telomere recombination NtRootD5_25290 PF17827 PrmC N-terminal domain NtRootD5_25290 PF13649 Methyltransferase domain NtRootD5_25300 PF00472 RF-1 domain NtRootD5_25300 PF03462 PCRF domain NtRootD5_25310 PF07497 Rho termination factor, RNA-binding domain NtRootD5_25310 PF07498 Rho termination factor, N-terminal domain NtRootD5_25310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NtRootD5_25320 PF00288 GHMP kinases N terminal domain NtRootD5_25320 PF08544 GHMP kinases C terminal NtRootD5_25330 PF00291 Pyridoxal-phosphate dependent enzyme NtRootD5_25340 PF00742 Homoserine dehydrogenase NtRootD5_25340 PF03447 Homoserine dehydrogenase, NAD binding domain NtRootD5_25340 PF01842 ACT domain NtRootD5_25350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NtRootD5_25350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NtRootD5_25360 PF00750 tRNA synthetases class I (R) NtRootD5_25360 PF03485 Arginyl tRNA synthetase N terminal domain NtRootD5_25360 PF05746 DALR anticodon binding domain NtRootD5_25400 PF00970 Oxidoreductase FAD-binding domain NtRootD5_25400 PF00042 Globin NtRootD5_25400 PF00175 Oxidoreductase NAD-binding domain NtRootD5_25410 PF16485 Protealysin propeptide NtRootD5_25410 PF02868 Thermolysin metallopeptidase, alpha-helical domain NtRootD5_25410 PF01447 Thermolysin metallopeptidase, catalytic domain NtRootD5_25430 PF01965 DJ-1/PfpI family NtRootD5_25460 PF00270 DEAD/DEAH box helicase NtRootD5_25460 PF11898 Domain of unknown function (DUF3418) NtRootD5_25460 PF04408 Helicase associated domain (HA2) NtRootD5_25460 PF00271 Helicase conserved C-terminal domain NtRootD5_25460 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NtRootD5_25470 PF01230 HIT domain NtRootD5_25480 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_25480 PF00107 Zinc-binding dehydrogenase NtRootD5_25490 PF00581 Rhodanese-like domain NtRootD5_25530 PF01475 Ferric uptake regulator family NtRootD5_25540 PF00950 ABC 3 transport family NtRootD5_25550 PF00005 ABC transporter NtRootD5_25560 PF01297 Zinc-uptake complex component A periplasmic NtRootD5_25570 PF01595 Cyclin M transmembrane N-terminal domain NtRootD5_25570 PF00571 CBS domain NtRootD5_25580 PF00571 CBS domain NtRootD5_25580 PF01595 Cyclin M transmembrane N-terminal domain NtRootD5_25580 PF03471 Transporter associated domain NtRootD5_25590 PF16870 2-oxoglutarate dehydrogenase C-terminal NtRootD5_25590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NtRootD5_25590 PF16078 2-oxoglutarate dehydrogenase N-terminus NtRootD5_25590 PF00676 Dehydrogenase E1 component NtRootD5_25590 PF02779 Transketolase, pyrimidine binding domain NtRootD5_25620 PF00144 Beta-lactamase NtRootD5_25660 PF04542 Sigma-70 region 2 NtRootD5_25660 PF08281 Sigma-70, region 4 NtRootD5_25680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NtRootD5_25690 PF03193 RsgA GTPase NtRootD5_25700 PF00459 Inositol monophosphatase family NtRootD5_25710 PF00266 Aminotransferase class-V NtRootD5_25720 PF08241 Methyltransferase domain NtRootD5_25740 PF07690 Major Facilitator Superfamily NtRootD5_25760 PF13180 PDZ domain NtRootD5_25770 PF01668 SmpB protein NtRootD5_25780 PF01551 Peptidase family M23 NtRootD5_25790 PF18075 FtsX extracellular domain NtRootD5_25790 PF02687 FtsX-like permease family NtRootD5_25800 PF00005 ABC transporter NtRootD5_25810 PF00472 RF-1 domain NtRootD5_25810 PF03462 PCRF domain NtRootD5_25870 PF00437 Type II/IV secretion system protein NtRootD5_25890 PF01183 Glycosyl hydrolases family 25 NtRootD5_25940 PF00535 Glycosyl transferase family 2 NtRootD5_25970 PF14524 Wzt C-terminal domain NtRootD5_25970 PF00005 ABC transporter NtRootD5_25980 PF01061 ABC-2 type transporter NtRootD5_25990 PF17994 Galactofuranosyltransferase 2 N-terminal NtRootD5_26000 PF03275 UDP-galactopyranose mutase NtRootD5_26030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NtRootD5_26040 PF00132 Bacterial transferase hexapeptide (six repeats) NtRootD5_26060 PF01580 FtsK/SpoIIIE family NtRootD5_26060 PF12538 DNA transporter NtRootD5_26080 PF02467 Transcription factor WhiB NtRootD5_26090 PF12282 Signal transduction histidine kinase NtRootD5_26090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_26090 PF07568 Histidine kinase NtRootD5_26100 PF05088 Bacterial NAD-glutamate dehydrogenase NtRootD5_26170 PF07517 SecA DEAD-like domain NtRootD5_26170 PF01043 SecA preprotein cross-linking domain NtRootD5_26170 PF07516 SecA Wing and Scaffold domain NtRootD5_26180 PF06224 Winged helix DNA-binding domain NtRootD5_26190 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NtRootD5_26190 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NtRootD5_26220 PF10647 Lipoprotein LpqB beta-propeller domain NtRootD5_26220 PF10646 Sporulation and spore germination NtRootD5_26230 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_26230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_26230 PF00672 HAMP domain NtRootD5_26240 PF00072 Response regulator receiver domain NtRootD5_26240 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_26270 PF14258 Domain of unknown function (DUF4350) NtRootD5_26280 PF07726 ATPase family associated with various cellular activities (AAA) NtRootD5_26280 PF17863 AAA lid domain NtRootD5_26340 PF00005 ABC transporter NtRootD5_26340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_26350 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_26350 PF12911 N-terminal TM domain of oligopeptide transport permease C NtRootD5_26360 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_26410 PF00890 FAD binding domain NtRootD5_26420 PF00248 Aldo/keto reductase family NtRootD5_26440 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_26440 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NtRootD5_26450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_26450 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_26470 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NtRootD5_26470 PF08501 Shikimate dehydrogenase substrate binding domain NtRootD5_26480 PF07690 Major Facilitator Superfamily NtRootD5_26480 PF00083 Sugar (and other) transporter NtRootD5_26490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_26490 PF03466 LysR substrate binding domain NtRootD5_26500 PF00266 Aminotransferase class-V NtRootD5_26520 PF00781 Diacylglycerol kinase catalytic domain NtRootD5_26530 PF00684 DnaJ central domain NtRootD5_26530 PF01556 DnaJ C terminal domain NtRootD5_26530 PF00226 DnaJ domain NtRootD5_26540 PF00588 SpoU rRNA Methylase family NtRootD5_26550 PF04542 Sigma-70 region 2 NtRootD5_26550 PF04545 Sigma-70, region 4 NtRootD5_26560 PF10099 Anti-sigma-K factor rskA NtRootD5_26570 PF02447 GntP family permease NtRootD5_26590 PF02585 GlcNAc-PI de-N-acetylase NtRootD5_26600 PF00766 Electron transfer flavoprotein FAD-binding domain NtRootD5_26600 PF01012 Electron transfer flavoprotein domain NtRootD5_26610 PF01012 Electron transfer flavoprotein domain NtRootD5_26620 PF13180 PDZ domain NtRootD5_26640 PF04536 TPM domain NtRootD5_26650 PF04012 PspA/IM30 family NtRootD5_26660 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_26660 PF07702 UTRA domain NtRootD5_26670 PF03699 Uncharacterised protein family (UPF0182) NtRootD5_26680 PF05362 Lon protease (S16) C-terminal proteolytic domain NtRootD5_26680 PF13180 PDZ domain NtRootD5_26710 PF00570 HRDC domain NtRootD5_26710 PF00580 UvrD/REP helicase N-terminal domain NtRootD5_26710 PF13361 UvrD-like helicase C-terminal domain NtRootD5_26720 PF00293 NUDIX domain NtRootD5_26720 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NtRootD5_26720 PF09297 NADH pyrophosphatase zinc ribbon domain NtRootD5_26740 PF13361 UvrD-like helicase C-terminal domain NtRootD5_26740 PF00580 UvrD/REP helicase N-terminal domain NtRootD5_26780 PF00497 Bacterial extracellular solute-binding proteins, family 3 NtRootD5_26790 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_26800 PF00005 ABC transporter NtRootD5_26810 PF00933 Glycosyl hydrolase family 3 N terminal domain NtRootD5_26830 PF00202 Aminotransferase class-III NtRootD5_26840 PF00296 Luciferase-like monooxygenase NtRootD5_26850 PF00490 Delta-aminolevulinic acid dehydratase NtRootD5_26870 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NtRootD5_26870 PF03900 Porphobilinogen deaminase, C-terminal domain NtRootD5_26880 PF00762 Ferrochelatase NtRootD5_26890 PF06778 Chlorite dismutase NtRootD5_26900 PF01593 Flavin containing amine oxidoreductase NtRootD5_26910 PF01208 Uroporphyrinogen decarboxylase (URO-D) NtRootD5_26920 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NtRootD5_26920 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NtRootD5_26920 PF01488 Shikimate / quinate 5-dehydrogenase NtRootD5_26930 PF00106 short chain dehydrogenase NtRootD5_26940 PF00581 Rhodanese-like domain NtRootD5_26940 PF00899 ThiF family NtRootD5_26950 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_26980 PF01329 Pterin 4 alpha carbinolamine dehydratase NtRootD5_26990 PF05690 Thiazole biosynthesis protein ThiG NtRootD5_27010 PF01266 FAD dependent oxidoreductase NtRootD5_27010 PF05690 Thiazole biosynthesis protein ThiG NtRootD5_27020 PF02581 Thiamine monophosphate synthase NtRootD5_27040 PF00561 alpha/beta hydrolase fold NtRootD5_27050 PF00773 RNB domain NtRootD5_27050 PF00575 S1 RNA binding domain NtRootD5_27060 PF00271 Helicase conserved C-terminal domain NtRootD5_27060 PF00270 DEAD/DEAH box helicase NtRootD5_27070 PF01555 DNA methylase NtRootD5_27080 PF01914 MarC family integral membrane protein NtRootD5_27100 PF05195 Aminopeptidase P, N-terminal domain NtRootD5_27100 PF00557 Metallopeptidase family M24 NtRootD5_27120 PF00571 CBS domain NtRootD5_27120 PF01769 Divalent cation transporter NtRootD5_27120 PF03448 MgtE intracellular N domain NtRootD5_27140 PF01883 Iron-sulfur cluster assembly protein NtRootD5_27140 PF10609 NUBPL iron-transfer P-loop NTPase NtRootD5_27150 PF02416 mttA/Hcf106 family NtRootD5_27170 PF08281 Sigma-70, region 4 NtRootD5_27170 PF04542 Sigma-70 region 2 NtRootD5_27180 PF01596 O-methyltransferase NtRootD5_27220 PF03641 Possible lysine decarboxylase NtRootD5_27230 PF00005 ABC transporter NtRootD5_27250 PF00497 Bacterial extracellular solute-binding proteins, family 3 NtRootD5_27260 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_27270 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_27280 PF07687 Peptidase dimerisation domain NtRootD5_27280 PF01546 Peptidase family M20/M25/M40 NtRootD5_27290 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle NtRootD5_27290 PF14602 Hexapeptide repeat of succinyl-transferase NtRootD5_27320 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_27320 PF13977 BetI-type transcriptional repressor, C-terminal NtRootD5_27330 PF16363 GDP-mannose 4,6 dehydratase NtRootD5_27340 PF00285 Citrate synthase, C-terminal domain NtRootD5_27350 PF00155 Aminotransferase class I and II NtRootD5_27360 PF00037 4Fe-4S binding domain NtRootD5_27390 PF14492 Elongation Factor G, domain II NtRootD5_27390 PF00009 Elongation factor Tu GTP binding domain NtRootD5_27390 PF03144 Elongation factor Tu domain 2 NtRootD5_27390 PF00679 Elongation factor G C-terminus NtRootD5_27410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_27410 PF00005 ABC transporter NtRootD5_27420 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_27420 PF12911 N-terminal TM domain of oligopeptide transport permease C NtRootD5_27430 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_27440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NtRootD5_27460 PF06071 Protein of unknown function (DUF933) NtRootD5_27460 PF01926 50S ribosome-binding GTPase NtRootD5_27470 PF02646 RmuC family NtRootD5_27480 PF02401 LytB protein NtRootD5_27500 PF02601 Exonuclease VII, large subunit NtRootD5_27500 PF13742 OB-fold nucleic acid binding domain NtRootD5_27510 PF02609 Exonuclease VII small subunit NtRootD5_27520 PF03976 Polyphosphate kinase 2 (PPK2) NtRootD5_27530 PF00155 Aminotransferase class I and II NtRootD5_27550 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_27560 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_27570 PF00571 CBS domain NtRootD5_27570 PF00005 ABC transporter NtRootD5_27580 PF03193 RsgA GTPase NtRootD5_27590 PF13344 Haloacid dehalogenase-like hydrolase NtRootD5_27590 PF00293 NUDIX domain NtRootD5_27600 PF01301 Glycosyl hydrolases family 35 NtRootD5_27620 PF02678 Pirin NtRootD5_27620 PF05726 Pirin C-terminal cupin domain NtRootD5_27630 PF01869 BadF/BadG/BcrA/BcrD ATPase family NtRootD5_27650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_27650 PF03466 LysR substrate binding domain NtRootD5_27660 PF07690 Major Facilitator Superfamily NtRootD5_27670 PF06736 Protein of unknown function (DUF1211) NtRootD5_27720 PF01544 CorA-like Mg2+ transporter protein NtRootD5_27740 PF00210 Ferritin-like domain NtRootD5_27750 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NtRootD5_27760 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NtRootD5_27780 PF03109 ABC1 family NtRootD5_27790 PF03551 Transcriptional regulator PadR-like family NtRootD5_27970 PF00072 Response regulator receiver domain NtRootD5_27970 PF03861 ANTAR domain NtRootD5_27990 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_27990 PF17862 AAA+ lid domain NtRootD5_27990 PF06480 FtsH Extracellular NtRootD5_27990 PF01434 Peptidase family M41 NtRootD5_28100 PF13302 Acetyltransferase (GNAT) domain NtRootD5_28110 PF00483 Nucleotidyl transferase NtRootD5_28120 PF01812 5-formyltetrahydrofolate cyclo-ligase family NtRootD5_28160 PF02540 NAD synthase NtRootD5_28160 PF00958 GMP synthase C terminal domain NtRootD5_28160 PF00117 Glutamine amidotransferase class-I NtRootD5_28200 PF01266 FAD dependent oxidoreductase NtRootD5_28200 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NtRootD5_28210 PF00478 IMP dehydrogenase / GMP reductase domain NtRootD5_28250 PF00664 ABC transporter transmembrane region NtRootD5_28250 PF00005 ABC transporter NtRootD5_28260 PF00571 CBS domain NtRootD5_28260 PF00478 IMP dehydrogenase / GMP reductase domain NtRootD5_28270 PF01757 Acyltransferase family NtRootD5_28280 PF01757 Acyltransferase family NtRootD5_28290 PF00118 TCP-1/cpn60 chaperonin family NtRootD5_28300 PF00166 Chaperonin 10 Kd subunit NtRootD5_28320 PF18096 THUMP domain-like NtRootD5_28330 PF08501 Shikimate dehydrogenase substrate binding domain NtRootD5_28340 PF00444 Ribosomal protein L36 NtRootD5_28360 PF04107 Glutamate-cysteine ligase family 2(GCS2) NtRootD5_28370 PF00814 Glycoprotease family NtRootD5_28390 PF00814 Glycoprotease family NtRootD5_28400 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NtRootD5_28410 PF00842 Alanine racemase, C-terminal domain NtRootD5_28410 PF01168 Alanine racemase, N-terminal domain NtRootD5_28430 PF02056 Family 4 glycosyl hydrolase NtRootD5_28430 PF11975 Family 4 glycosyl hydrolase C-terminal domain NtRootD5_28450 PF00534 Glycosyl transferases group 1 NtRootD5_28450 PF13439 Glycosyltransferase Family 4 NtRootD5_28460 PF01268 Formate--tetrahydrofolate ligase NtRootD5_28470 PF01658 Myo-inositol-1-phosphate synthase NtRootD5_28480 PF00248 Aldo/keto reductase family NtRootD5_28490 PF11941 Domain of unknown function (DUF3459) NtRootD5_28490 PF00128 Alpha amylase, catalytic domain NtRootD5_28500 PF00128 Alpha amylase, catalytic domain NtRootD5_28510 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NtRootD5_28510 PF00128 Alpha amylase, catalytic domain NtRootD5_28520 PF01256 Carbohydrate kinase NtRootD5_28520 PF03853 YjeF-related protein N-terminus NtRootD5_28530 PF01648 4'-phosphopantetheinyl transferase superfamily NtRootD5_28540 PF01380 SIS domain NtRootD5_28550 PF00485 Phosphoribulokinase / Uridine kinase family NtRootD5_28570 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NtRootD5_28570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NtRootD5_28570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NtRootD5_28570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NtRootD5_28580 PF00380 Ribosomal protein S9/S16 NtRootD5_28590 PF00572 Ribosomal protein L13 NtRootD5_28630 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NtRootD5_28640 PF00437 Type II/IV secretion system protein NtRootD5_28690 PF13180 PDZ domain NtRootD5_28710 PF01416 tRNA pseudouridine synthase NtRootD5_28720 PF01196 Ribosomal protein L17 NtRootD5_28730 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NtRootD5_28730 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NtRootD5_28730 PF01000 RNA polymerase Rpb3/RpoA insert domain NtRootD5_28740 PF00411 Ribosomal protein S11 NtRootD5_28750 PF00416 Ribosomal protein S13/S18 NtRootD5_28760 PF01176 Translation initiation factor 1A / IF-1 NtRootD5_28770 PF03576 Peptidase family S58 NtRootD5_28780 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_28790 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_28810 PF00557 Metallopeptidase family M24 NtRootD5_28830 PF00501 AMP-binding enzyme NtRootD5_28830 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_28840 PF00067 Cytochrome P450 NtRootD5_28850 PF00535 Glycosyl transferase family 2 NtRootD5_28860 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NtRootD5_28860 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NtRootD5_28880 PF00344 SecY translocase NtRootD5_28890 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NtRootD5_28900 PF00327 Ribosomal protein L30p/L7e NtRootD5_28910 PF03719 Ribosomal protein S5, C-terminal domain NtRootD5_28910 PF00333 Ribosomal protein S5, N-terminal domain NtRootD5_28920 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NtRootD5_28930 PF00347 Ribosomal protein L6 NtRootD5_28940 PF00410 Ribosomal protein S8 NtRootD5_28950 PF00281 Ribosomal protein L5 NtRootD5_28950 PF00673 ribosomal L5P family C-terminus NtRootD5_28960 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NtRootD5_28970 PF00238 Ribosomal protein L14p/L23e NtRootD5_28980 PF00366 Ribosomal protein S17 NtRootD5_28990 PF00831 Ribosomal L29 protein NtRootD5_29000 PF00252 Ribosomal protein L16p/L10e NtRootD5_29010 PF07650 KH domain NtRootD5_29010 PF00189 Ribosomal protein S3, C-terminal domain NtRootD5_29020 PF00237 Ribosomal protein L22p/L17e NtRootD5_29030 PF00203 Ribosomal protein S19 NtRootD5_29040 PF00181 Ribosomal Proteins L2, RNA binding domain NtRootD5_29040 PF03947 Ribosomal Proteins L2, C-terminal domain NtRootD5_29050 PF00276 Ribosomal protein L23 NtRootD5_29060 PF00573 Ribosomal protein L4/L1 family NtRootD5_29070 PF00297 Ribosomal protein L3 NtRootD5_29080 PF00338 Ribosomal protein S10p/S20e NtRootD5_29090 PF00232 Glycosyl hydrolase family 1 NtRootD5_29120 PF00009 Elongation factor Tu GTP binding domain NtRootD5_29120 PF03144 Elongation factor Tu domain 2 NtRootD5_29120 PF03143 Elongation factor Tu C-terminal domain NtRootD5_29130 PF03144 Elongation factor Tu domain 2 NtRootD5_29130 PF14492 Elongation Factor G, domain II NtRootD5_29130 PF03764 Elongation factor G, domain IV NtRootD5_29130 PF00009 Elongation factor Tu GTP binding domain NtRootD5_29130 PF00679 Elongation factor G C-terminus NtRootD5_29140 PF00177 Ribosomal protein S7p/S5e NtRootD5_29150 PF00164 Ribosomal protein S12/S23 NtRootD5_29160 PF05000 RNA polymerase Rpb1, domain 4 NtRootD5_29160 PF04998 RNA polymerase Rpb1, domain 5 NtRootD5_29160 PF04983 RNA polymerase Rpb1, domain 3 NtRootD5_29160 PF04997 RNA polymerase Rpb1, domain 1 NtRootD5_29160 PF00623 RNA polymerase Rpb1, domain 2 NtRootD5_29170 PF04563 RNA polymerase beta subunit NtRootD5_29170 PF04561 RNA polymerase Rpb2, domain 2 NtRootD5_29170 PF04565 RNA polymerase Rpb2, domain 3 NtRootD5_29170 PF10385 RNA polymerase beta subunit external 1 domain NtRootD5_29170 PF00562 RNA polymerase Rpb2, domain 6 NtRootD5_29170 PF04560 RNA polymerase Rpb2, domain 7 NtRootD5_29180 PF02803 Thiolase, C-terminal domain NtRootD5_29180 PF00108 Thiolase, N-terminal domain NtRootD5_29190 PF03129 Anticodon binding domain NtRootD5_29190 PF04073 Aminoacyl-tRNA editing domain NtRootD5_29190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NtRootD5_29200 PF00542 Ribosomal protein L7/L12 C-terminal domain NtRootD5_29200 PF16320 Ribosomal protein L7/L12 dimerisation domain NtRootD5_29210 PF00466 Ribosomal protein L10 NtRootD5_29250 PF00687 Ribosomal protein L1p/L10e family NtRootD5_29260 PF00298 Ribosomal protein L11, RNA binding domain NtRootD5_29260 PF03946 Ribosomal protein L11, N-terminal domain NtRootD5_29270 PF02357 Transcription termination factor nusG NtRootD5_29280 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NtRootD5_29290 PF00155 Aminotransferase class I and II NtRootD5_29300 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_29300 PF00072 Response regulator receiver domain NtRootD5_29370 PF00365 Phosphofructokinase NtRootD5_29390 PF07690 Major Facilitator Superfamily NtRootD5_29420 PF08669 Glycine cleavage T-protein C-terminal barrel domain NtRootD5_29420 PF01571 Aminomethyltransferase folate-binding domain NtRootD5_29430 PF01566 Natural resistance-associated macrophage protein NtRootD5_29430 PF03358 NADPH-dependent FMN reductase NtRootD5_29440 PF08768 Domain of unknown function (DUF1794) NtRootD5_29470 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_29480 PF00583 Acetyltransferase (GNAT) family NtRootD5_29490 PF02503 Polyphosphate kinase middle domain NtRootD5_29490 PF17941 Polyphosphate kinase C-terminal domain 1 NtRootD5_29490 PF13090 Polyphosphate kinase C-terminal domain 2 NtRootD5_29490 PF13089 Polyphosphate kinase N-terminal domain NtRootD5_29500 PF00300 Histidine phosphatase superfamily (branch 1) NtRootD5_29500 PF00293 NUDIX domain NtRootD5_29540 PF00303 Thymidylate synthase NtRootD5_29550 PF00186 Dihydrofolate reductase NtRootD5_29570 PF01118 Semialdehyde dehydrogenase, NAD binding domain NtRootD5_29570 PF02774 Semialdehyde dehydrogenase, dimerisation domain NtRootD5_29610 PF01565 FAD binding domain NtRootD5_29610 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NtRootD5_29620 PF07690 Major Facilitator Superfamily NtRootD5_29640 PF13452 N-terminal half of MaoC dehydratase NtRootD5_29690 PF00005 ABC transporter NtRootD5_29700 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_29710 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NtRootD5_29720 PF00248 Aldo/keto reductase family NtRootD5_29730 PF00128 Alpha amylase, catalytic domain NtRootD5_29740 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_29750 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_29780 PF00480 ROK family NtRootD5_29790 PF00999 Sodium/hydrogen exchanger family NtRootD5_29810 PF03734 L,D-transpeptidase catalytic domain NtRootD5_29810 PF01476 LysM domain NtRootD5_29820 PF03880 DbpA RNA binding domain NtRootD5_29820 PF00270 DEAD/DEAH box helicase NtRootD5_29820 PF00271 Helicase conserved C-terminal domain NtRootD5_29840 PF00072 Response regulator receiver domain NtRootD5_29840 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_29850 PF00582 Universal stress protein family NtRootD5_29850 PF02702 Osmosensitive K+ channel His kinase sensor domain NtRootD5_29850 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_29850 PF13493 Domain of unknown function (DUF4118) NtRootD5_29850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_29870 PF03738 Glutathionylspermidine synthase preATP-grasp NtRootD5_29880 PF13520 Amino acid permease NtRootD5_29890 PF09594 Glycosyltransferase family 87 NtRootD5_29900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NtRootD5_29900 PF02770 Acyl-CoA dehydrogenase, middle domain NtRootD5_29900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NtRootD5_29930 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_29940 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_29950 PF16353 Domain of unknown function(DUF4981) NtRootD5_29950 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NtRootD5_29950 PF02837 Glycosyl hydrolases family 2, sugar binding domain NtRootD5_29950 PF02929 Beta galactosidase small chain NtRootD5_29970 PF01638 HxlR-like helix-turn-helix NtRootD5_29980 PF05506 Domain of unknown function (DUF756) NtRootD5_29980 PF04185 Phosphoesterase family NtRootD5_29990 PF09594 Glycosyltransferase family 87 NtRootD5_30000 PF01053 Cys/Met metabolism PLP-dependent enzyme NtRootD5_30010 PF00571 CBS domain NtRootD5_30010 PF00291 Pyridoxal-phosphate dependent enzyme NtRootD5_30050 PF00501 AMP-binding enzyme NtRootD5_30050 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_30070 PF00085 Thioredoxin NtRootD5_30080 PF17933 Tetracyclin repressor-like, C-terminal domain NtRootD5_30080 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_30090 PF13732 Domain of unknown function (DUF4162) NtRootD5_30090 PF00005 ABC transporter NtRootD5_30130 PF07885 Ion channel NtRootD5_30150 PF04461 Protein of unknown function (DUF520) NtRootD5_30160 PF03239 Iron permease FTR1 family NtRootD5_30170 PF09375 Imelysin NtRootD5_30170 PF13473 Cupredoxin-like domain NtRootD5_30180 PF04261 Dyp-type peroxidase family NtRootD5_30180 PF10518 TAT (twin-arginine translocation) pathway signal sequence NtRootD5_30210 PF01435 Peptidase family M48 NtRootD5_30240 PF01475 Ferric uptake regulator family NtRootD5_30250 PF00199 Catalase NtRootD5_30250 PF06628 Catalase-related immune-responsive NtRootD5_30270 PF13520 Amino acid permease NtRootD5_30290 PF00107 Zinc-binding dehydrogenase NtRootD5_30290 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_30300 PF00171 Aldehyde dehydrogenase family NtRootD5_30320 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_30330 PF00892 EamA-like transporter family NtRootD5_30370 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_30380 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_30390 PF01842 ACT domain NtRootD5_30390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NtRootD5_30390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_30400 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_30410 PF02278 Polysaccharide lyase family 8, super-sandwich domain NtRootD5_30410 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain NtRootD5_30410 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain NtRootD5_30420 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain NtRootD5_30420 PF02278 Polysaccharide lyase family 8, super-sandwich domain NtRootD5_30420 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain NtRootD5_30430 PF00202 Aminotransferase class-III NtRootD5_30440 PF00171 Aldehyde dehydrogenase family NtRootD5_30450 PF13556 PucR C-terminal helix-turn-helix domain NtRootD5_30450 PF17853 GGDEF-like domain NtRootD5_30450 PF05651 Putative sugar diacid recognition NtRootD5_30460 PF07690 Major Facilitator Superfamily NtRootD5_30470 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_30470 PF07729 FCD domain NtRootD5_30480 PF00581 Rhodanese-like domain NtRootD5_30480 PF00753 Metallo-beta-lactamase superfamily NtRootD5_30490 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_30500 PF10414 Sirohaem synthase dimerisation region NtRootD5_30500 PF14824 Sirohaem biosynthesis protein central NtRootD5_30500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NtRootD5_30510 PF04960 Glutaminase NtRootD5_30520 PF00296 Luciferase-like monooxygenase NtRootD5_30570 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_30580 PF00005 ABC transporter NtRootD5_30600 PF02574 Homocysteine S-methyltransferase NtRootD5_30610 PF00009 Elongation factor Tu GTP binding domain NtRootD5_30620 PF01507 Phosphoadenosine phosphosulfate reductase family NtRootD5_30630 PF01507 Phosphoadenosine phosphosulfate reductase family NtRootD5_30640 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NtRootD5_30640 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NtRootD5_30660 PF03458 UPF0126 domain NtRootD5_30690 PF00348 Polyprenyl synthetase NtRootD5_30700 PF01494 FAD binding domain NtRootD5_30710 PF01209 ubiE/COQ5 methyltransferase family NtRootD5_30720 PF00425 chorismate binding enzyme NtRootD5_30730 PF00497 Bacterial extracellular solute-binding proteins, family 3 NtRootD5_30740 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_30750 PF00005 ABC transporter NtRootD5_30770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_30790 PF13378 Enolase C-terminal domain-like NtRootD5_30790 PF18374 Enolase N-terminal domain-like NtRootD5_30830 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_30840 PF08244 Glycosyl hydrolases family 32 C terminal NtRootD5_30840 PF00251 Glycosyl hydrolases family 32 N-terminal domain NtRootD5_30850 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_30860 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_30950 PF00082 Subtilase family NtRootD5_30950 PF04151 Bacterial pre-peptidase C-terminal domain NtRootD5_31010 PF00364 Biotin-requiring enzyme NtRootD5_31010 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NtRootD5_31010 PF02817 e3 binding domain NtRootD5_31020 PF02780 Transketolase, C-terminal domain NtRootD5_31020 PF02779 Transketolase, pyrimidine binding domain NtRootD5_31030 PF00676 Dehydrogenase E1 component NtRootD5_31060 PF02350 UDP-N-acetylglucosamine 2-epimerase NtRootD5_31080 PF00483 Nucleotidyl transferase NtRootD5_31090 PF16363 GDP-mannose 4,6 dehydratase NtRootD5_31100 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NtRootD5_31110 PF13614 AAA domain NtRootD5_31190 PF00534 Glycosyl transferases group 1 NtRootD5_31190 PF13439 Glycosyltransferase Family 4 NtRootD5_31210 PF02397 Bacterial sugar transferase NtRootD5_31290 PF00561 alpha/beta hydrolase fold NtRootD5_31310 PF02386 Cation transport protein NtRootD5_31320 PF03814 Potassium-transporting ATPase A subunit NtRootD5_31340 PF02669 K+-transporting ATPase, c chain NtRootD5_31350 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_31350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_31350 PF00582 Universal stress protein family NtRootD5_31350 PF02702 Osmosensitive K+ channel His kinase sensor domain NtRootD5_31350 PF13493 Domain of unknown function (DUF4118) NtRootD5_31360 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_31360 PF00072 Response regulator receiver domain NtRootD5_31400 PF01022 Bacterial regulatory protein, arsR family NtRootD5_31470 PF01047 MarR family NtRootD5_31480 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NtRootD5_31510 PF00743 Flavin-binding monooxygenase-like NtRootD5_31520 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_31520 PF00107 Zinc-binding dehydrogenase NtRootD5_31540 PF00248 Aldo/keto reductase family NtRootD5_31550 PF00248 Aldo/keto reductase family NtRootD5_31610 PF00378 Enoyl-CoA hydratase/isomerase NtRootD5_31620 PF00970 Oxidoreductase FAD-binding domain NtRootD5_31620 PF00111 2Fe-2S iron-sulfur cluster binding domain NtRootD5_31620 PF00175 Oxidoreductase NAD-binding domain NtRootD5_31630 PF01883 Iron-sulfur cluster assembly protein NtRootD5_31640 PF05138 Phenylacetic acid catabolic protein NtRootD5_31650 PF06243 Phenylacetic acid degradation B NtRootD5_31660 PF05138 Phenylacetic acid catabolic protein NtRootD5_31670 PF01451 Low molecular weight phosphotyrosine protein phosphatase NtRootD5_31680 PF01476 LysM domain NtRootD5_31680 PF05257 CHAP domain NtRootD5_31690 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_31690 PF00672 HAMP domain NtRootD5_31690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NtRootD5_31690 PF00072 Response regulator receiver domain NtRootD5_31690 PF01627 Hpt domain NtRootD5_31690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_31700 PF00990 Diguanylate cyclase, GGDEF domain NtRootD5_31730 PF13439 Glycosyltransferase Family 4 NtRootD5_31750 PF13439 Glycosyltransferase Family 4 NtRootD5_31750 PF00534 Glycosyl transferases group 1 NtRootD5_31760 PF00535 Glycosyl transferase family 2 NtRootD5_31770 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NtRootD5_31770 PF00326 Prolyl oligopeptidase family NtRootD5_31780 PF08241 Methyltransferase domain NtRootD5_31800 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_31800 PF00672 HAMP domain NtRootD5_31800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_31800 PF18698 Histidine kinase sensor domain NtRootD5_31800 PF00989 PAS fold NtRootD5_31830 PF03707 Bacterial signalling protein N terminal repeat NtRootD5_31830 PF00990 Diguanylate cyclase, GGDEF domain NtRootD5_31830 PF00563 EAL domain NtRootD5_31850 PF03061 Thioesterase superfamily NtRootD5_31860 PF00501 AMP-binding enzyme NtRootD5_31860 PF14535 AMP-binding enzyme C-terminal domain NtRootD5_31880 PF00171 Aldehyde dehydrogenase family NtRootD5_31880 PF01575 MaoC like domain NtRootD5_31890 PF13350 Tyrosine phosphatase family NtRootD5_31910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NtRootD5_31910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NtRootD5_31920 PF00378 Enoyl-CoA hydratase/isomerase NtRootD5_31930 PF00108 Thiolase, N-terminal domain NtRootD5_31930 PF02803 Thiolase, C-terminal domain NtRootD5_31950 PF01738 Dienelactone hydrolase family NtRootD5_31960 PF00324 Amino acid permease NtRootD5_31970 PF01566 Natural resistance-associated macrophage protein NtRootD5_31970 PF03358 NADPH-dependent FMN reductase NtRootD5_31980 PF02517 CPBP intramembrane metalloprotease NtRootD5_32000 PF00378 Enoyl-CoA hydratase/isomerase NtRootD5_32010 PF00501 AMP-binding enzyme NtRootD5_32010 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_32020 PF01040 UbiA prenyltransferase family NtRootD5_32060 PF00350 Dynamin family NtRootD5_32070 PF00350 Dynamin family NtRootD5_32100 PF00012 Hsp70 protein NtRootD5_32110 PF01578 Cytochrome C assembly protein NtRootD5_32130 PF02683 Cytochrome C biogenesis protein transmembrane region NtRootD5_32140 PF00578 AhpC/TSA family NtRootD5_32150 PF00300 Histidine phosphatase superfamily (branch 1) NtRootD5_32170 PF04264 YceI-like domain NtRootD5_32210 PF02629 CoA binding domain NtRootD5_32210 PF06971 Putative DNA-binding protein N-terminus NtRootD5_32250 PF12728 Helix-turn-helix domain NtRootD5_32260 PF00793 DAHP synthetase I family NtRootD5_32270 PF05448 Acetyl xylan esterase (AXE1) NtRootD5_32290 PF07690 Major Facilitator Superfamily NtRootD5_32310 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_32320 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_32340 PF08532 Beta-galactosidase trimerisation domain NtRootD5_32340 PF08533 Beta-galactosidase C-terminal domain NtRootD5_32340 PF02449 Beta-galactosidase NtRootD5_32350 PF01547 Bacterial extracellular solute-binding protein NtRootD5_32360 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_32370 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_32390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_32410 PF00171 Aldehyde dehydrogenase family NtRootD5_32420 PF13378 Enolase C-terminal domain-like NtRootD5_32420 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NtRootD5_32430 PF00701 Dihydrodipicolinate synthetase family NtRootD5_32450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_32450 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_32460 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_32470 PF07729 FCD domain NtRootD5_32470 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_32480 PF01070 FMN-dependent dehydrogenase NtRootD5_32490 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NtRootD5_32490 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NtRootD5_32500 PF01022 Bacterial regulatory protein, arsR family NtRootD5_32530 PF00850 Histone deacetylase domain NtRootD5_32540 PF02386 Cation transport protein NtRootD5_32550 PF02080 TrkA-C domain NtRootD5_32550 PF02254 TrkA-N domain NtRootD5_32560 PF03807 NADP oxidoreductase coenzyme F420-dependent NtRootD5_32560 PF14748 Pyrroline-5-carboxylate reductase dimerisation NtRootD5_32570 PF01261 Xylose isomerase-like TIM barrel NtRootD5_32580 PF02541 Ppx/GppA phosphatase family NtRootD5_32600 PF01131 DNA topoisomerase NtRootD5_32600 PF01751 Toprim domain NtRootD5_32600 PF13368 Topoisomerase C-terminal repeat NtRootD5_32650 PF00581 Rhodanese-like domain NtRootD5_32650 PF12368 Rhodanase C-terminal NtRootD5_32650 PF17773 UPF0176 acylphosphatase like domain NtRootD5_32670 PF00270 DEAD/DEAH box helicase NtRootD5_32670 PF09369 Domain of unknown function (DUF1998) NtRootD5_32670 PF00271 Helicase conserved C-terminal domain NtRootD5_32730 PF00437 Type II/IV secretion system protein NtRootD5_32750 PF01367 5'-3' exonuclease, C-terminal SAM fold NtRootD5_32750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NtRootD5_32750 PF00476 DNA polymerase family A NtRootD5_32750 PF01612 3'-5' exonuclease NtRootD5_32770 PF00293 NUDIX domain NtRootD5_32780 PF00730 HhH-GPD superfamily base excision DNA repair protein NtRootD5_32780 PF00633 Helix-hairpin-helix motif NtRootD5_32780 PF10576 Iron-sulfur binding domain of endonuclease III NtRootD5_32810 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_32810 PF00501 AMP-binding enzyme NtRootD5_32810 PF16177 Acetyl-coenzyme A synthetase N-terminus NtRootD5_32820 PF08220 DeoR-like helix-turn-helix domain NtRootD5_32820 PF00455 DeoR C terminal sensor domain NtRootD5_32830 PF02687 FtsX-like permease family NtRootD5_32830 PF12704 MacB-like periplasmic core domain NtRootD5_32830 PF00005 ABC transporter NtRootD5_32850 PF00665 Integrase core domain NtRootD5_32850 PF13936 Helix-turn-helix domain NtRootD5_32860 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_32880 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_32890 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_32910 PF16875 Glycosyl hydrolase family 36 N-terminal domain NtRootD5_32910 PF16874 Glycosyl hydrolase family 36 C-terminal domain NtRootD5_32920 PF01220 Dehydroquinase class II NtRootD5_32930 PF02674 Colicin V production protein NtRootD5_32940 PF00027 Cyclic nucleotide-binding domain NtRootD5_32940 PF13545 Crp-like helix-turn-helix domain NtRootD5_32980 PF00912 Transglycosylase NtRootD5_32980 PF00905 Penicillin binding protein transpeptidase domain NtRootD5_32990 PF00149 Calcineurin-like phosphoesterase NtRootD5_33000 PF00664 ABC transporter transmembrane region NtRootD5_33000 PF00005 ABC transporter NtRootD5_33010 PF00664 ABC transporter transmembrane region NtRootD5_33010 PF00005 ABC transporter NtRootD5_33050 PF01259 SAICAR synthetase NtRootD5_33060 PF02844 Phosphoribosylglycinamide synthetase, N domain NtRootD5_33060 PF02843 Phosphoribosylglycinamide synthetase, C domain NtRootD5_33060 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NtRootD5_33090 PF00375 Sodium:dicarboxylate symporter family NtRootD5_33120 PF01177 Asp/Glu/Hydantoin racemase NtRootD5_33130 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NtRootD5_33140 PF17831 Pyruvate dehydrogenase E1 component middle domain NtRootD5_33140 PF00456 Transketolase, thiamine diphosphate binding domain NtRootD5_33160 PF12804 MobA-like NTP transferase domain NtRootD5_33170 PF00583 Acetyltransferase (GNAT) family NtRootD5_33180 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NtRootD5_33180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NtRootD5_33200 PF02625 XdhC and CoxI family NtRootD5_33200 PF13478 XdhC Rossmann domain NtRootD5_33210 PF00860 Permease family NtRootD5_33220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NtRootD5_33230 PF01979 Amidohydrolase family NtRootD5_33280 PF01014 Uricase NtRootD5_33290 PF00860 Permease family NtRootD5_33300 PF01614 Bacterial transcriptional regulator NtRootD5_33300 PF09339 IclR helix-turn-helix domain NtRootD5_33310 PF03949 Malic enzyme, NAD binding domain NtRootD5_33310 PF00390 Malic enzyme, N-terminal domain NtRootD5_33320 PF01274 Malate synthase NtRootD5_33340 PF07883 Cupin domain NtRootD5_33340 PF05899 Protein of unknown function (DUF861) NtRootD5_33370 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_33390 PF01547 Bacterial extracellular solute-binding protein NtRootD5_33400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_33400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_33410 PF00884 Sulfatase NtRootD5_33420 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_33430 PF02278 Polysaccharide lyase family 8, super-sandwich domain NtRootD5_33430 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain NtRootD5_33430 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain NtRootD5_33440 PF02661 Fic/DOC family NtRootD5_33460 PF04978 Protein of unknown function (DUF664) NtRootD5_33520 PF07690 Major Facilitator Superfamily NtRootD5_33550 PF00912 Transglycosylase NtRootD5_33550 PF00905 Penicillin binding protein transpeptidase domain NtRootD5_33570 PF07690 Major Facilitator Superfamily NtRootD5_33580 PF00909 Ammonium Transporter Family NtRootD5_33600 PF00916 Sulfate permease family NtRootD5_33600 PF01740 STAS domain NtRootD5_33640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_33640 PF03466 LysR substrate binding domain NtRootD5_33660 PF01717 Cobalamin-independent synthase, Catalytic domain NtRootD5_33660 PF08267 Cobalamin-independent synthase, N-terminal domain NtRootD5_33700 PF07690 Major Facilitator Superfamily NtRootD5_33720 PF01979 Amidohydrolase family NtRootD5_33730 PF03364 Polyketide cyclase / dehydrase and lipid transport NtRootD5_33740 PF18370 Rhamnogalacturonan I lyases beta-sheet domain NtRootD5_33740 PF01839 FG-GAP repeat NtRootD5_33750 PF00296 Luciferase-like monooxygenase NtRootD5_33770 PF07690 Major Facilitator Superfamily NtRootD5_33790 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_33800 PF00005 ABC transporter NtRootD5_33800 PF09383 NIL domain NtRootD5_33810 PF03180 NLPA lipoprotein NtRootD5_33820 PF00296 Luciferase-like monooxygenase NtRootD5_33910 PF12146 Serine aminopeptidase, S33 NtRootD5_33950 PF00005 ABC transporter NtRootD5_33950 PF00664 ABC transporter transmembrane region NtRootD5_33960 PF00664 ABC transporter transmembrane region NtRootD5_33960 PF00005 ABC transporter NtRootD5_33970 PF02525 Flavodoxin-like fold NtRootD5_33980 PF01638 HxlR-like helix-turn-helix NtRootD5_33990 PF01928 CYTH domain NtRootD5_33990 PF05235 CHAD domain NtRootD5_34000 PF03364 Polyketide cyclase / dehydrase and lipid transport NtRootD5_34070 PF02223 Thymidylate kinase NtRootD5_34100 PF13344 Haloacid dehalogenase-like hydrolase NtRootD5_34100 PF00293 NUDIX domain NtRootD5_34260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_34260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_34280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_34280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_34290 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_34300 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_34310 PF01547 Bacterial extracellular solute-binding protein NtRootD5_34320 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_34330 PF10137 Predicted nucleotide-binding protein containing TIR-like domain NtRootD5_34390 PF01261 Xylose isomerase-like TIM barrel NtRootD5_34400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NtRootD5_34400 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NtRootD5_34410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_34410 PF00205 Thiamine pyrophosphate enzyme, central domain NtRootD5_34410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NtRootD5_34420 PF02595 Glycerate kinase family NtRootD5_34430 PF01979 Amidohydrolase family NtRootD5_34440 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_34440 PF00072 Response regulator receiver domain NtRootD5_34450 PF00578 AhpC/TSA family NtRootD5_34470 PF00486 Transcriptional regulatory protein, C terminal NtRootD5_34470 PF00072 Response regulator receiver domain NtRootD5_34480 PF00535 Glycosyl transferase family 2 NtRootD5_34480 PF03552 Cellulose synthase NtRootD5_34480 PF07238 PilZ domain NtRootD5_34490 PF01740 STAS domain NtRootD5_34510 PF00266 Aminotransferase class-V NtRootD5_34550 PF07690 Major Facilitator Superfamily NtRootD5_34560 PF01638 HxlR-like helix-turn-helix NtRootD5_34570 PF01569 PAP2 superfamily NtRootD5_34590 PF00576 HIUase/Transthyretin family NtRootD5_34600 PF00665 Integrase core domain NtRootD5_34600 PF13936 Helix-turn-helix domain NtRootD5_34620 PF00156 Phosphoribosyl transferase domain NtRootD5_34630 PF00586 AIR synthase related protein, N-terminal domain NtRootD5_34630 PF02769 AIR synthase related protein, C-terminal domain NtRootD5_34670 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_34670 PF17871 AAA lid domain NtRootD5_34670 PF07724 AAA domain (Cdc48 subfamily) NtRootD5_34670 PF10431 C-terminal, D2-small domain, of ClpB protein NtRootD5_34670 PF02861 Clp amino terminal domain, pathogenicity island component NtRootD5_34690 PF00005 ABC transporter NtRootD5_34690 PF03459 TOBE domain NtRootD5_34700 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_34720 PF03459 TOBE domain NtRootD5_34730 PF07730 Histidine kinase NtRootD5_34740 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_34740 PF00072 Response regulator receiver domain NtRootD5_34760 PF08031 Berberine and berberine like NtRootD5_34760 PF01565 FAD binding domain NtRootD5_34800 PF03733 Inner membrane component domain NtRootD5_34810 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NtRootD5_34820 PF05962 HutD NtRootD5_34830 PF00893 Small Multidrug Resistance protein NtRootD5_34840 PF00893 Small Multidrug Resistance protein NtRootD5_34850 PF00248 Aldo/keto reductase family NtRootD5_34860 PF00753 Metallo-beta-lactamase superfamily NtRootD5_34870 PF00270 DEAD/DEAH box helicase NtRootD5_34870 PF00271 Helicase conserved C-terminal domain NtRootD5_34880 PF07690 Major Facilitator Superfamily NtRootD5_34890 PF09278 MerR, DNA binding NtRootD5_34890 PF00376 MerR family regulatory protein NtRootD5_34900 PF08468 Methyltransferase small domain N-terminal NtRootD5_34900 PF05175 Methyltransferase small domain NtRootD5_34920 PF07687 Peptidase dimerisation domain NtRootD5_34920 PF01546 Peptidase family M20/M25/M40 NtRootD5_34930 PF00083 Sugar (and other) transporter NtRootD5_34940 PF07690 Major Facilitator Superfamily NtRootD5_34970 PF02390 Putative methyltransferase NtRootD5_35010 PF04545 Sigma-70, region 4 NtRootD5_35010 PF04542 Sigma-70 region 2 NtRootD5_35050 PF00271 Helicase conserved C-terminal domain NtRootD5_35050 PF00176 SNF2 family N-terminal domain NtRootD5_35050 PF04434 SWIM zinc finger NtRootD5_35080 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_35080 PF07702 UTRA domain NtRootD5_35150 PF00171 Aldehyde dehydrogenase family NtRootD5_35160 PF00111 2Fe-2S iron-sulfur cluster binding domain NtRootD5_35160 PF00175 Oxidoreductase NAD-binding domain NtRootD5_35180 PF12697 Alpha/beta hydrolase family NtRootD5_35200 PF00106 short chain dehydrogenase NtRootD5_35210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NtRootD5_35210 PF00205 Thiamine pyrophosphate enzyme, central domain NtRootD5_35210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NtRootD5_35240 PF00355 Rieske [2Fe-2S] domain NtRootD5_35260 PF01047 MarR family NtRootD5_35270 PF03447 Homoserine dehydrogenase, NAD binding domain NtRootD5_35270 PF01958 Domain of unknown function DUF108 NtRootD5_35280 PF13411 MerR HTH family regulatory protein NtRootD5_35290 PF00684 DnaJ central domain NtRootD5_35290 PF01556 DnaJ C terminal domain NtRootD5_35290 PF00226 DnaJ domain NtRootD5_35300 PF01025 GrpE NtRootD5_35310 PF00012 Hsp70 protein NtRootD5_35320 PF05675 Protein of unknown function (DUF817) NtRootD5_35340 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_35340 PF13305 Tetracyclin repressor-like, C-terminal domain NtRootD5_35370 PF12833 Helix-turn-helix domain NtRootD5_35370 PF02311 AraC-like ligand binding domain NtRootD5_35400 PF16655 PhoD-like phosphatase, N-terminal domain NtRootD5_35400 PF09423 PhoD-like phosphatase NtRootD5_35410 PF00732 GMC oxidoreductase NtRootD5_35410 PF05199 GMC oxidoreductase NtRootD5_35420 PF14525 AraC-binding-like domain NtRootD5_35440 PF00155 Aminotransferase class I and II NtRootD5_35450 PF08240 Alcohol dehydrogenase GroES-like domain NtRootD5_35450 PF00107 Zinc-binding dehydrogenase NtRootD5_35480 PF13520 Amino acid permease NtRootD5_35500 PF02728 Copper amine oxidase, N3 domain NtRootD5_35500 PF01179 Copper amine oxidase, enzyme domain NtRootD5_35510 PF13977 BetI-type transcriptional repressor, C-terminal NtRootD5_35510 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_35520 PF01810 LysE type translocator NtRootD5_35530 PF00171 Aldehyde dehydrogenase family NtRootD5_35550 PF01842 ACT domain NtRootD5_35550 PF01817 Chorismate mutase type II NtRootD5_35550 PF00800 Prephenate dehydratase NtRootD5_35570 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_35580 PF01451 Low molecular weight phosphotyrosine protein phosphatase NtRootD5_35590 PF01758 Sodium Bile acid symporter family NtRootD5_35600 PF01022 Bacterial regulatory protein, arsR family NtRootD5_35620 PF03176 MMPL family NtRootD5_35640 PF08241 Methyltransferase domain NtRootD5_35650 PF03795 YCII-related domain NtRootD5_35670 PF04542 Sigma-70 region 2 NtRootD5_35670 PF08281 Sigma-70, region 4 NtRootD5_35680 PF00248 Aldo/keto reductase family NtRootD5_35700 PF00817 impB/mucB/samB family NtRootD5_35700 PF11799 impB/mucB/samB family C-terminal domain NtRootD5_35710 PF01810 LysE type translocator NtRootD5_35730 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_35740 PF01156 Inosine-uridine preferring nucleoside hydrolase NtRootD5_35750 PF07690 Major Facilitator Superfamily NtRootD5_35760 PF00294 pfkB family carbohydrate kinase NtRootD5_35790 PF01451 Low molecular weight phosphotyrosine protein phosphatase NtRootD5_35800 PF04715 Anthranilate synthase component I, N terminal region NtRootD5_35800 PF00425 chorismate binding enzyme NtRootD5_35800 PF00117 Glutamine amidotransferase class-I NtRootD5_35810 PF13091 PLD-like domain NtRootD5_35810 PF13396 Phospholipase_D-nuclease N-terminal NtRootD5_35830 PF00324 Amino acid permease NtRootD5_35840 PF02627 Carboxymuconolactone decarboxylase family NtRootD5_35850 PF00571 CBS domain NtRootD5_35850 PF00291 Pyridoxal-phosphate dependent enzyme NtRootD5_35860 PF00221 Aromatic amino acid lyase NtRootD5_35870 PF00296 Luciferase-like monooxygenase NtRootD5_35900 PF01053 Cys/Met metabolism PLP-dependent enzyme NtRootD5_35920 PF04107 Glutamate-cysteine ligase family 2(GCS2) NtRootD5_35940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NtRootD5_35950 PF00664 ABC transporter transmembrane region NtRootD5_35950 PF00005 ABC transporter NtRootD5_35950 PF08021 Siderophore-interacting FAD-binding domain NtRootD5_35950 PF04954 Siderophore-interacting protein NtRootD5_35960 PF01804 Penicillin amidase NtRootD5_35990 PF00005 ABC transporter NtRootD5_36000 PF09819 ABC-type cobalt transport system, permease component NtRootD5_36030 PF03334 Na+/H+ antiporter subunit NtRootD5_36040 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NtRootD5_36060 PF00361 Proton-conducting membrane transporter NtRootD5_36070 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NtRootD5_36080 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NtRootD5_36080 PF00361 Proton-conducting membrane transporter NtRootD5_36080 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NtRootD5_36080 PF13244 Domain of unknown function (DUF4040) NtRootD5_36110 PF00999 Sodium/hydrogen exchanger family NtRootD5_36130 PF00692 dUTPase NtRootD5_36160 PF02557 D-alanyl-D-alanine carboxypeptidase NtRootD5_36170 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NtRootD5_36170 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NtRootD5_36180 PF05977 Transmembrane secretion effector NtRootD5_36190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_36190 PF03466 LysR substrate binding domain NtRootD5_36200 PF16363 GDP-mannose 4,6 dehydratase NtRootD5_36210 PF01022 Bacterial regulatory protein, arsR family NtRootD5_36240 PF01261 Xylose isomerase-like TIM barrel NtRootD5_36250 PF07859 alpha/beta hydrolase fold NtRootD5_36250 PF13472 GDSL-like Lipase/Acylhydrolase family NtRootD5_36260 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_36270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_36270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_36310 PF03631 Virulence factor BrkB NtRootD5_36320 PF00480 ROK family NtRootD5_36330 PF01261 Xylose isomerase-like TIM barrel NtRootD5_36340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NtRootD5_36340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NtRootD5_36350 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_36360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NtRootD5_36360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NtRootD5_36370 PF00596 Class II Aldolase and Adducin N-terminal domain NtRootD5_36380 PF11762 L-arabinose isomerase C-terminal domain NtRootD5_36380 PF02610 L-arabinose isomerase NtRootD5_36390 PF01263 Aldose 1-epimerase NtRootD5_36400 PF00135 Carboxylesterase family NtRootD5_36420 PF01047 MarR family NtRootD5_36420 PF00480 ROK family NtRootD5_36440 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_36450 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_36460 PF00005 ABC transporter NtRootD5_36480 PF01042 Endoribonuclease L-PSP NtRootD5_36510 PF03466 LysR substrate binding domain NtRootD5_36510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_36540 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_36550 PF05336 L-rhamnose mutarotase NtRootD5_36570 PF00596 Class II Aldolase and Adducin N-terminal domain NtRootD5_36580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NtRootD5_36580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NtRootD5_36590 PF02261 Aspartate decarboxylase NtRootD5_36610 PF00723 Glycosyl hydrolases family 15 NtRootD5_36620 PF00296 Luciferase-like monooxygenase NtRootD5_36630 PF00497 Bacterial extracellular solute-binding proteins, family 3 NtRootD5_36640 PF00291 Pyridoxal-phosphate dependent enzyme NtRootD5_36640 PF13291 ACT domain NtRootD5_36680 PF00296 Luciferase-like monooxygenase NtRootD5_36690 PF00296 Luciferase-like monooxygenase NtRootD5_36710 PF00296 Luciferase-like monooxygenase NtRootD5_36730 PF00005 ABC transporter NtRootD5_36740 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_36770 PF05872 Bacterial protein of unknown function (DUF853) NtRootD5_36790 PF02683 Cytochrome C biogenesis protein transmembrane region NtRootD5_36790 PF00578 AhpC/TSA family NtRootD5_36790 PF17991 Thioredoxin like C-terminal domain NtRootD5_36800 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) NtRootD5_36800 PF05425 Copper resistance protein D NtRootD5_36810 PF00216 Bacterial DNA-binding protein NtRootD5_36840 PF12680 SnoaL-like domain NtRootD5_36840 PF08281 Sigma-70, region 4 NtRootD5_36840 PF04542 Sigma-70 region 2 NtRootD5_36860 PF00253 Ribosomal protein S14p/S29e NtRootD5_36870 PF00471 Ribosomal protein L33 NtRootD5_36880 PF00830 Ribosomal L28 family NtRootD5_36890 PF00970 Oxidoreductase FAD-binding domain NtRootD5_36890 PF00175 Oxidoreductase NAD-binding domain NtRootD5_36890 PF00042 Globin NtRootD5_36970 PF08021 Siderophore-interacting FAD-binding domain NtRootD5_36970 PF04954 Siderophore-interacting protein NtRootD5_36980 PF00005 ABC transporter NtRootD5_36990 PF01032 FecCD transport family NtRootD5_37000 PF01032 FecCD transport family NtRootD5_37070 PF02770 Acyl-CoA dehydrogenase, middle domain NtRootD5_37070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NtRootD5_37070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NtRootD5_37100 PF01613 Flavin reductase like domain NtRootD5_37110 PF00248 Aldo/keto reductase family NtRootD5_37190 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_37190 PF07729 FCD domain NtRootD5_37210 PF10415 Fumarase C C-terminus NtRootD5_37210 PF00206 Lyase NtRootD5_37220 PF00324 Amino acid permease NtRootD5_37230 PF07729 FCD domain NtRootD5_37230 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_37250 PF00248 Aldo/keto reductase family NtRootD5_37260 PF05336 L-rhamnose mutarotase NtRootD5_37280 PF13378 Enolase C-terminal domain-like NtRootD5_37280 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NtRootD5_37290 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_37320 PF17862 AAA+ lid domain NtRootD5_37320 PF06480 FtsH Extracellular NtRootD5_37320 PF01434 Peptidase family M41 NtRootD5_37320 PF00004 ATPase family associated with various cellular activities (AAA) NtRootD5_37340 PF13291 ACT domain NtRootD5_37340 PF04607 Region found in RelA / SpoT proteins NtRootD5_37340 PF02824 TGS domain NtRootD5_37350 PF00106 short chain dehydrogenase NtRootD5_37360 PF02909 Tetracyclin repressor-like, C-terminal domain NtRootD5_37360 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_37370 PF00144 Beta-lactamase NtRootD5_37380 PF00749 tRNA synthetases class I (E and Q), catalytic domain NtRootD5_37420 PF01037 Lrp/AsnC ligand binding domain NtRootD5_37430 PF01810 LysE type translocator NtRootD5_37450 PF01022 Bacterial regulatory protein, arsR family NtRootD5_37490 PF00665 Integrase core domain NtRootD5_37490 PF13936 Helix-turn-helix domain NtRootD5_37500 PF00295 Glycosyl hydrolases family 28 NtRootD5_37510 PF13936 Helix-turn-helix domain NtRootD5_37510 PF00665 Integrase core domain NtRootD5_37520 PF09339 IclR helix-turn-helix domain NtRootD5_37520 PF01614 Bacterial transcriptional regulator NtRootD5_37530 PF01321 Creatinase/Prolidase N-terminal domain NtRootD5_37530 PF00557 Metallopeptidase family M24 NtRootD5_37540 PF00083 Sugar (and other) transporter NtRootD5_37540 PF08946 Osmosensory transporter coiled coil NtRootD5_37550 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_37550 PF07729 FCD domain NtRootD5_37560 PF00464 Serine hydroxymethyltransferase NtRootD5_37570 PF01266 FAD dependent oxidoreductase NtRootD5_37580 PF04267 Sarcosine oxidase, delta subunit family NtRootD5_37590 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_37590 PF17806 Sarcosine oxidase A3 domain NtRootD5_37590 PF01571 Aminomethyltransferase folate-binding domain NtRootD5_37590 PF08669 Glycine cleavage T-protein C-terminal barrel domain NtRootD5_37600 PF04268 Sarcosine oxidase, gamma subunit family NtRootD5_37610 PF03313 Serine dehydratase alpha chain NtRootD5_37610 PF03315 Serine dehydratase beta chain NtRootD5_37620 PF00551 Formyl transferase NtRootD5_37650 PF01522 Polysaccharide deacetylase NtRootD5_37660 PF13936 Helix-turn-helix domain NtRootD5_37660 PF00665 Integrase core domain NtRootD5_37680 PF00390 Malic enzyme, N-terminal domain NtRootD5_37680 PF03949 Malic enzyme, NAD binding domain NtRootD5_37690 PF17925 Tetracyclin repressor-like, C-terminal domain NtRootD5_37690 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_37740 PF03737 Aldolase/RraA NtRootD5_37750 PF07690 Major Facilitator Superfamily NtRootD5_37760 PF00083 Sugar (and other) transporter NtRootD5_37770 PF07690 Major Facilitator Superfamily NtRootD5_37780 PF01047 MarR family NtRootD5_37820 PF00005 ABC transporter NtRootD5_37820 PF13732 Domain of unknown function (DUF4162) NtRootD5_37840 PF00324 Amino acid permease NtRootD5_37850 PF01232 Mannitol dehydrogenase Rossmann domain NtRootD5_37850 PF08125 Mannitol dehydrogenase C-terminal domain NtRootD5_37860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NtRootD5_37860 PF02378 Phosphotransferase system, EIIC NtRootD5_37860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NtRootD5_37880 PF00391 PEP-utilising enzyme, mobile domain NtRootD5_37880 PF05524 PEP-utilising enzyme, N-terminal NtRootD5_37880 PF02896 PEP-utilising enzyme, TIM barrel domain NtRootD5_37920 PF00561 alpha/beta hydrolase fold NtRootD5_37940 PF04679 ATP dependent DNA ligase C terminal region NtRootD5_37940 PF01068 ATP dependent DNA ligase domain NtRootD5_37990 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NtRootD5_37990 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NtRootD5_38030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_38030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_38050 PF00005 ABC transporter NtRootD5_38050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NtRootD5_38060 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_38060 PF12911 N-terminal TM domain of oligopeptide transport permease C NtRootD5_38070 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_38080 PF17925 Tetracyclin repressor-like, C-terminal domain NtRootD5_38080 PF00440 Bacterial regulatory proteins, tetR family NtRootD5_38090 PF03358 NADPH-dependent FMN reductase NtRootD5_38140 PF00155 Aminotransferase class I and II NtRootD5_38180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NtRootD5_38180 PF02817 e3 binding domain NtRootD5_38180 PF00364 Biotin-requiring enzyme NtRootD5_38190 PF02780 Transketolase, C-terminal domain NtRootD5_38190 PF02779 Transketolase, pyrimidine binding domain NtRootD5_38200 PF00676 Dehydrogenase E1 component NtRootD5_38210 PF00155 Aminotransferase class I and II NtRootD5_38220 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV NtRootD5_38250 PF08328 Adenylosuccinate lyase C-terminal NtRootD5_38250 PF00206 Lyase NtRootD5_38280 PF03061 Thioesterase superfamily NtRootD5_38290 PF00106 short chain dehydrogenase NtRootD5_38300 PF08946 Osmosensory transporter coiled coil NtRootD5_38300 PF00083 Sugar (and other) transporter NtRootD5_38310 PF02626 Carboxyltransferase domain, subdomain A and B NtRootD5_38320 PF02682 Carboxyltransferase domain, subdomain C and D NtRootD5_38330 PF03746 LamB/YcsF family NtRootD5_38340 PF03466 LysR substrate binding domain NtRootD5_38340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_38360 PF03737 Aldolase/RraA NtRootD5_38370 PF00155 Aminotransferase class I and II NtRootD5_38410 PF03328 HpcH/HpaI aldolase/citrate lyase family NtRootD5_38420 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_38430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NtRootD5_38440 PF00171 Aldehyde dehydrogenase family NtRootD5_38450 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_38450 PF07729 FCD domain NtRootD5_38460 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_38490 PF04226 Transglycosylase associated protein NtRootD5_38520 PF06445 GyrI-like small molecule binding domain NtRootD5_38520 PF12833 Helix-turn-helix domain NtRootD5_38560 PF06724 Domain of Unknown Function (DUF1206) NtRootD5_38590 PF03780 Asp23 family, cell envelope-related function NtRootD5_38650 PF04542 Sigma-70 region 2 NtRootD5_38650 PF08281 Sigma-70, region 4 NtRootD5_38690 PF00512 His Kinase A (phospho-acceptor) domain NtRootD5_38690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_38700 PF03793 PASTA domain NtRootD5_38700 PF00069 Protein kinase domain NtRootD5_38710 PF00300 Histidine phosphatase superfamily (branch 1) NtRootD5_38740 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NtRootD5_38750 PF00723 Glycosyl hydrolases family 15 NtRootD5_38770 PF00282 Pyridoxal-dependent decarboxylase conserved domain NtRootD5_38790 PF13419 Haloacid dehalogenase-like hydrolase NtRootD5_38820 PF01494 FAD binding domain NtRootD5_38830 PF01614 Bacterial transcriptional regulator NtRootD5_38830 PF09339 IclR helix-turn-helix domain NtRootD5_38840 PF07690 Major Facilitator Superfamily NtRootD5_38900 PF04226 Transglycosylase associated protein NtRootD5_38910 PF00069 Protein kinase domain NtRootD5_38910 PF03793 PASTA domain NtRootD5_38930 PF01047 MarR family NtRootD5_38990 PF04055 Radical SAM superfamily NtRootD5_38990 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NtRootD5_39000 PF03313 Serine dehydratase alpha chain NtRootD5_39000 PF03315 Serine dehydratase beta chain NtRootD5_39010 PF00464 Serine hydroxymethyltransferase NtRootD5_39020 PF01597 Glycine cleavage H-protein NtRootD5_39030 PF01571 Aminomethyltransferase folate-binding domain NtRootD5_39030 PF08669 Glycine cleavage T-protein C-terminal barrel domain NtRootD5_39040 PF02347 Glycine cleavage system P-protein NtRootD5_39050 PF13556 PucR C-terminal helix-turn-helix domain NtRootD5_39060 PF00083 Sugar (and other) transporter NtRootD5_39070 PF00491 Arginase family NtRootD5_39080 PF01741 Large-conductance mechanosensitive channel, MscL NtRootD5_39130 PF02233 NAD(P) transhydrogenase beta subunit NtRootD5_39140 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NtRootD5_39150 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NtRootD5_39150 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NtRootD5_39160 PF03358 NADPH-dependent FMN reductase NtRootD5_39390 PF13419 Haloacid dehalogenase-like hydrolase NtRootD5_39410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NtRootD5_39410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NtRootD5_39460 PF13936 Helix-turn-helix domain NtRootD5_39460 PF00665 Integrase core domain NtRootD5_39470 PF07690 Major Facilitator Superfamily NtRootD5_39480 PF01494 FAD binding domain NtRootD5_39490 PF00501 AMP-binding enzyme NtRootD5_39490 PF13193 AMP-binding enzyme C-terminal domain NtRootD5_39520 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_39530 PF01042 Endoribonuclease L-PSP NtRootD5_39550 PF09339 IclR helix-turn-helix domain NtRootD5_39550 PF01614 Bacterial transcriptional regulator NtRootD5_39560 PF01144 Coenzyme A transferase NtRootD5_39570 PF01144 Coenzyme A transferase NtRootD5_39580 PF02803 Thiolase, C-terminal domain NtRootD5_39580 PF00108 Thiolase, N-terminal domain NtRootD5_39590 PF02627 Carboxymuconolactone decarboxylase family NtRootD5_39600 PF00561 alpha/beta hydrolase fold NtRootD5_39600 PF08386 TAP-like protein NtRootD5_39610 PF10397 Adenylosuccinate lyase C-terminus NtRootD5_39610 PF00206 Lyase NtRootD5_39620 PF04444 Catechol dioxygenase N terminus NtRootD5_39620 PF00775 Dioxygenase NtRootD5_39630 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NtRootD5_39630 PF00775 Dioxygenase NtRootD5_39640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NtRootD5_39640 PF01261 Xylose isomerase-like TIM barrel NtRootD5_39650 PF08501 Shikimate dehydrogenase substrate binding domain NtRootD5_39650 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NtRootD5_39660 PF01614 Bacterial transcriptional regulator NtRootD5_39660 PF09339 IclR helix-turn-helix domain NtRootD5_39670 PF00083 Sugar (and other) transporter NtRootD5_39700 PF02597 ThiS family NtRootD5_39720 PF00990 Diguanylate cyclase, GGDEF domain NtRootD5_39720 PF05230 MASE2 domain NtRootD5_39760 PF07690 Major Facilitator Superfamily NtRootD5_39770 PF07691 PA14 domain NtRootD5_39770 PF01915 Glycosyl hydrolase family 3 C-terminal domain NtRootD5_39770 PF00933 Glycosyl hydrolase family 3 N terminal domain NtRootD5_39770 PF14310 Fibronectin type III-like domain NtRootD5_39790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NtRootD5_39790 PF03466 LysR substrate binding domain NtRootD5_39860 PF02447 GntP family permease NtRootD5_39870 PF01081 KDPG and KHG aldolase NtRootD5_39880 PF07969 Amidohydrolase family NtRootD5_39900 PF00294 pfkB family carbohydrate kinase NtRootD5_39910 PF01614 Bacterial transcriptional regulator NtRootD5_39910 PF09339 IclR helix-turn-helix domain NtRootD5_39920 PF01042 Endoribonuclease L-PSP NtRootD5_39930 PF00795 Carbon-nitrogen hydrolase NtRootD5_39930 PF00535 Glycosyl transferase family 2 NtRootD5_40010 PF03976 Polyphosphate kinase 2 (PPK2) NtRootD5_40030 PF01418 Helix-turn-helix domain, rpiR family NtRootD5_40030 PF01380 SIS domain NtRootD5_40040 PF07075 Protein of unknown function (DUF1343) NtRootD5_40050 PF01915 Glycosyl hydrolase family 3 C-terminal domain NtRootD5_40050 PF00933 Glycosyl hydrolase family 3 N terminal domain NtRootD5_40090 PF02583 Metal-sensitive transcriptional repressor NtRootD5_40100 PF00403 Heavy-metal-associated domain NtRootD5_40110 PF00403 Heavy-metal-associated domain NtRootD5_40210 PF01554 MatE NtRootD5_40230 PF07681 DoxX NtRootD5_40260 PF00391 PEP-utilising enzyme, mobile domain NtRootD5_40260 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NtRootD5_40280 PF03061 Thioesterase superfamily NtRootD5_40310 PF02779 Transketolase, pyrimidine binding domain NtRootD5_40310 PF02780 Transketolase, C-terminal domain NtRootD5_40320 PF00456 Transketolase, thiamine diphosphate binding domain NtRootD5_40330 PF00083 Sugar (and other) transporter NtRootD5_40360 PF02734 DAK2 domain NtRootD5_40360 PF02733 Dak1 domain NtRootD5_40370 PF02502 Ribose/Galactose Isomerase NtRootD5_40400 PF00772 DnaB-like helicase N terminal domain NtRootD5_40400 PF03796 DnaB-like helicase C terminal domain NtRootD5_40440 PF03358 NADPH-dependent FMN reductase NtRootD5_40460 PF00135 Carboxylesterase family NtRootD5_40480 PF02515 CoA-transferase family III NtRootD5_40490 PF00682 HMGL-like NtRootD5_40560 PF00005 ABC transporter NtRootD5_40580 PF02567 Phenazine biosynthesis-like protein NtRootD5_40600 PF00665 Integrase core domain NtRootD5_40600 PF13936 Helix-turn-helix domain NtRootD5_40610 PF03948 Ribosomal protein L9, C-terminal domain NtRootD5_40610 PF01281 Ribosomal protein L9, N-terminal domain NtRootD5_40620 PF01084 Ribosomal protein S18 NtRootD5_40630 PF00436 Single-strand binding protein family NtRootD5_40640 PF01250 Ribosomal protein S6 NtRootD5_40670 PF00324 Amino acid permease NtRootD5_40680 PF02127 Aminopeptidase I zinc metalloprotease (M18) NtRootD5_40740 PF01168 Alanine racemase, N-terminal domain NtRootD5_40740 PF00842 Alanine racemase, C-terminal domain NtRootD5_40750 PF00324 Amino acid permease NtRootD5_40760 PF00072 Response regulator receiver domain NtRootD5_40760 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_40770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NtRootD5_40770 PF07730 Histidine kinase NtRootD5_40790 PF00005 ABC transporter NtRootD5_40800 PF00781 Diacylglycerol kinase catalytic domain NtRootD5_40820 PF07690 Major Facilitator Superfamily NtRootD5_40830 PF00455 DeoR C terminal sensor domain NtRootD5_40830 PF08220 DeoR-like helix-turn-helix domain NtRootD5_40840 PF12848 ABC transporter NtRootD5_40840 PF00005 ABC transporter NtRootD5_40850 PF01494 FAD binding domain NtRootD5_40860 PF00905 Penicillin binding protein transpeptidase domain NtRootD5_40870 PF17137 Domain of unknown function (DUF5110) NtRootD5_40870 PF16338 Domain of unknown function (DUF4968) NtRootD5_40870 PF01055 Glycosyl hydrolases family 31 NtRootD5_40880 PF00196 Bacterial regulatory proteins, luxR family NtRootD5_40880 PF00072 Response regulator receiver domain NtRootD5_40890 PF07730 Histidine kinase NtRootD5_40910 PF00005 ABC transporter NtRootD5_40920 PF01638 HxlR-like helix-turn-helix NtRootD5_40930 PF13460 NAD(P)H-binding NtRootD5_40970 PF00300 Histidine phosphatase superfamily (branch 1) NtRootD5_40980 PF01966 HD domain NtRootD5_40980 PF01743 Poly A polymerase head domain NtRootD5_40980 PF12627 Probable RNA and SrmB- binding site of polymerase A NtRootD5_40990 PF00293 NUDIX domain NtRootD5_41000 PF03023 Lipid II flippase MurJ NtRootD5_41020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NtRootD5_41030 PF00085 Thioredoxin NtRootD5_41070 PF02195 ParB-like nuclease domain NtRootD5_41070 PF17762 HTH domain found in ParB protein NtRootD5_41080 PF13614 AAA domain NtRootD5_41090 PF02527 rRNA small subunit methyltransferase G NtRootD5_41110 PF02096 60Kd inner membrane protein NtRootD5_41120 PF01809 Putative membrane protein insertion efficiency factor NtRootD5_41130 PF00825 Ribonuclease P NtRootD5_41140 PF00468 Ribosomal protein L34 NtRootD5_41170 PF01494 FAD binding domain NtRootD5_41190 PF00795 Carbon-nitrogen hydrolase NtRootD5_41220 PF13478 XdhC Rossmann domain NtRootD5_41220 PF02625 XdhC and CoxI family NtRootD5_41280 PF07905 Purine catabolism regulatory protein-like family NtRootD5_41280 PF13556 PucR C-terminal helix-turn-helix domain NtRootD5_41310 PF00551 Formyl transferase NtRootD5_41320 PF08669 Glycine cleavage T-protein C-terminal barrel domain NtRootD5_41320 PF01571 Aminomethyltransferase folate-binding domain NtRootD5_41320 PF01266 FAD dependent oxidoreductase NtRootD5_41320 PF16350 FAD dependent oxidoreductase central domain NtRootD5_41330 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NtRootD5_41330 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NtRootD5_41340 PF00893 Small Multidrug Resistance protein NtRootD5_41350 PF00893 Small Multidrug Resistance protein NtRootD5_41360 PF01557 Fumarylacetoacetate (FAA) hydrolase family NtRootD5_41370 PF00171 Aldehyde dehydrogenase family NtRootD5_41390 PF01593 Flavin containing amine oxidoreductase NtRootD5_41410 PF03358 NADPH-dependent FMN reductase NtRootD5_41450 PF00589 Phage integrase family NtRootD5_41450 PF02899 Phage integrase, N-terminal SAM-like domain NtRootD5_41460 PF00589 Phage integrase family NtRootD5_41460 PF02899 Phage integrase, N-terminal SAM-like domain NtRootD5_41510 PF00271 Helicase conserved C-terminal domain NtRootD5_41530 PF02595 Glycerate kinase family NtRootD5_41570 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NtRootD5_41570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NtRootD5_41580 PF00171 Aldehyde dehydrogenase family NtRootD5_41590 PF05199 GMC oxidoreductase NtRootD5_41590 PF00732 GMC oxidoreductase NtRootD5_41620 PF13936 Helix-turn-helix domain NtRootD5_41620 PF00665 Integrase core domain NtRootD5_41640 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_41650 PF02653 Branched-chain amino acid transport system / permease component NtRootD5_41660 PF00005 ABC transporter NtRootD5_41670 PF00392 Bacterial regulatory proteins, gntR family NtRootD5_41670 PF07729 FCD domain NtRootD5_41720 PF02156 Glycosyl hydrolase family 26 NtRootD5_41790 PF04294 VanW like protein NtRootD5_41870 PF00436 Single-strand binding protein family NtRootD5_41910 PF02195 ParB-like nuclease domain NtRootD5_41910 PF17762 HTH domain found in ParB protein NtRootD5_41920 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_41930 PF00083 Sugar (and other) transporter NtRootD5_41940 PF07859 alpha/beta hydrolase fold NtRootD5_41970 PF12697 Alpha/beta hydrolase family NtRootD5_42000 PF04679 ATP dependent DNA ligase C terminal region NtRootD5_42000 PF01068 ATP dependent DNA ligase domain NtRootD5_42060 PF00239 Resolvase, N terminal domain NtRootD5_42060 PF02796 Helix-turn-helix domain of resolvase NtRootD5_42070 PF13401 AAA domain NtRootD5_42080 PF09299 Mu transposase, C-terminal NtRootD5_42080 PF00665 Integrase core domain NtRootD5_42130 PF13614 AAA domain NtRootD5_42440 PF01565 FAD binding domain NtRootD5_42440 PF08031 Berberine and berberine like NtRootD5_42470 PF00356 Bacterial regulatory proteins, lacI family NtRootD5_42490 PF00933 Glycosyl hydrolase family 3 N terminal domain NtRootD5_42520 PF03459 TOBE domain NtRootD5_42520 PF00005 ABC transporter NtRootD5_42530 PF00528 Binding-protein-dependent transport system inner membrane component NtRootD5_42550 PF02391 MoaE protein NtRootD5_42560 PF01967 MoaC family NtRootD5_42570 PF00994 Probable molybdopterin binding domain NtRootD5_42570 PF03454 MoeA C-terminal region (domain IV) NtRootD5_42570 PF03453 MoeA N-terminal region (domain I and II) NtRootD5_42580 PF06463 Molybdenum Cofactor Synthesis C NtRootD5_42580 PF04055 Radical SAM superfamily NtRootD5_42610 PF00665 Integrase core domain NtRootD5_42640 PF00111 2Fe-2S iron-sulfur cluster binding domain NtRootD5_42640 PF01799 [2Fe-2S] binding domain NtRootD5_42660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NtRootD5_42660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NtRootD5_42670 PF01593 Flavin containing amine oxidoreductase NtRootD5_42700 PF03450 CO dehydrogenase flavoprotein C-terminal domain NtRootD5_42700 PF00941 FAD binding domain in molybdopterin dehydrogenase NtRootD5_42740 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NtRootD5_42750 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NtRootD5_42750 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase