ARUE_113p00050 SM01092 CO dehydrogenase flavoprotein C-terminal domain ARUE_113p00060 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ARUE_113p00120 SM00729 Elongator protein 3, MiaB family, Radical SAM ARUE_113p00810 SM00858 ARUE_113p00810 ARUE_232p00080 SM00857 Resolvase, N terminal domain ARUE_232p00240 SM00450 Rhodanese Homology Domain ARUE_232p00240 SM00849 Metallo-beta-lactamase superfamily ARUE_232p00260 SM00450 Rhodanese Homology Domain ARUE_232p00270 SM00450 Rhodanese Homology Domain ARUE_232p00340 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_232p00350 SM00857 Resolvase, N terminal domain ARUE_232p00440 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_232p00460 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_232p00520 SM00756 ARUE_232p00520 ARUE_232p00570 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_232p00600 SM00529 Helix-turn-helix diphteria tox regulatory element ARUE_232p00600 SM00899 ARUE_232p00600 ARUE_232p00630 SM01091 Transporter associated domain ARUE_232p00640 SM00857 Resolvase, N terminal domain ARUE_232p00700 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_232p00810 SM00422 helix_turn_helix, mercury resistance ARUE_232p01000 SM00470 ParB-like nuclease domain ARUE_232p01080 SM00318 Staphylococcal nuclease homologues ARUE_232p01210 SM00382 ATPases associated with a variety of cellular activities ARUE_232p01340 SM00421 helix_turn_helix, Lux Regulon ARUE_232p01470 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_232p01470 SM00895 ARUE_232p01470 ARUE_232p01490 SM00382 ATPases associated with a variety of cellular activities ARUE_232p01520 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_232p01530 SM01130 ARUE_232p01530 ARUE_232p01570 SM01011 Aminopeptidase P, N-terminal domain ARUE_232p01610 SM00382 ATPases associated with a variety of cellular activities ARUE_232p01890 SM00487 DEAD-like helicases superfamily ARUE_232p01890 SM00490 helicase superfamily c-terminal domain ARUE_232p01900 SM00487 DEAD-like helicases superfamily ARUE_232p01900 SM00490 helicase superfamily c-terminal domain ARUE_232p02020 SM00479 ARUE_232p02020 ARUE_c00010 SM00382 ATPases associated with a variety of cellular activities ARUE_c00010 SM00760 Bacterial dnaA protein helix-turn-helix domain ARUE_c00020 SM00480 DNA polymerase III beta subunit ARUE_c00030 SM01350 ARUE_c00030 ARUE_c00040 SM00382 ATPases associated with a variety of cellular activities ARUE_c00050 SM00387 Histidine kinase-like ATPases ARUE_c00050 SM00433 TopoisomeraseII ARUE_c00060 SM00434 DNA Topoisomerase IV ARUE_c00250 SM00220 Serine/Threonine protein kinases, catalytic domain ARUE_c00250 SM00740 ARUE_c00250 ARUE_c00260 SM00220 Serine/Threonine protein kinases, catalytic domain ARUE_c00260 SM00740 ARUE_c00260 ARUE_c00290 SM00331 Sigma factor PP2C-like phosphatases ARUE_c00290 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ARUE_c00300 SM00240 Forkhead associated domain ARUE_c00310 SM00240 Forkhead associated domain ARUE_c00330 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c00330 SM00895 ARUE_c00330 ARUE_c00340 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ARUE_c00360 SM00108 Bulb-type mannose-specific lectin ARUE_c00470 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c00470 SM00895 ARUE_c00470 ARUE_c00500 SM00796 Allophanate hydrolase subunit 1 ARUE_c00500 SM00797 Allophanate hydrolase subunit 2 ARUE_c00510 SM00878 Biotin carboxylase C-terminal domain ARUE_c00530 SM00354 helix_turn _helix lactose operon repressor ARUE_c00560 SM00954 Region found in RelA / SpoT proteins ARUE_c00750 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c00820 SM00354 helix_turn _helix lactose operon repressor ARUE_c00870 SM00641 Glycosyl hydrolases family 25 ARUE_c00980 SM00450 Rhodanese Homology Domain ARUE_c01040 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c01060 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c01060 SM01012 ARUE_c01060 ARUE_c01350 SM00382 ATPases associated with a variety of cellular activities ARUE_c01380 SM00905 Dihydroneopterin aldolase ARUE_c01620 SM00382 ATPases associated with a variety of cellular activities ARUE_c01620 SM01086 C-terminal, D2-small domain, of ClpB protein ARUE_c01690 SM01120 ARUE_c01690 ARUE_c01750 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c01770 SM00478 endonuclease III ARUE_c01770 SM00525 ARUE_c01770 ARUE_c01810 SM00796 Allophanate hydrolase subunit 1 ARUE_c01810 SM00797 Allophanate hydrolase subunit 2 ARUE_c01810 SM00878 Biotin carboxylase C-terminal domain ARUE_c01870 SM00382 ATPases associated with a variety of cellular activities ARUE_c01920 SM00382 ATPases associated with a variety of cellular activities ARUE_c01980 SM00813 Alpha-L-arabinofuranosidase C-terminus ARUE_c02010 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c02010 SM01012 ARUE_c02010 ARUE_c02020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c02020 SM01012 ARUE_c02020 ARUE_c02040 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c02040 SM01012 ARUE_c02040 ARUE_c02050 SM00354 helix_turn _helix lactose operon repressor ARUE_c02060 SM01119 ARUE_c02060 ARUE_c02070 SM00903 Flavin reductase like domain ARUE_c02110 SM00988 UreE urease accessory protein, N-terminal domain ARUE_c02210 SM00642 Alpha-amylase domain ARUE_c02290 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c02330 SM00656 ARUE_c02330 ARUE_c02340 SM00656 ARUE_c02340 ARUE_c02400 SM00354 helix_turn _helix lactose operon repressor ARUE_c02440 SM00903 Flavin reductase like domain ARUE_c02480 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c02500 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c02500 SM00895 ARUE_c02500 ARUE_c02660 SM01006 Siderophore biosynthesis protein domain ARUE_c02770 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c02820 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen ARUE_c02940 SM00420 helix_turn_helix, Deoxyribose operon repressor ARUE_c02940 SM01134 ARUE_c02940 ARUE_c02960 SM01012 ARUE_c02960 ARUE_c03000 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c03020 SM00354 helix_turn _helix lactose operon repressor ARUE_c03070 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c03070 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c03090 SM00896 Ferredoxin-fold anticodon binding domain ARUE_c03110 SM00507 HNH nucleases ARUE_c03130 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c03200 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c03220 SM00052 Putative diguanylate phosphodiesterase ARUE_c03280 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c03310 SM01012 ARUE_c03310 ARUE_c03380 SM00797 Allophanate hydrolase subunit 2 ARUE_c03390 SM00849 Metallo-beta-lactamase superfamily ARUE_c03510 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ARUE_c03540 SM00382 ATPases associated with a variety of cellular activities ARUE_c03560 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c03610 SM00382 ATPases associated with a variety of cellular activities ARUE_c03650 SM00507 HNH nucleases ARUE_c03690 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c03990 SM00450 Rhodanese Homology Domain ARUE_c04010 SM00450 Rhodanese Homology Domain ARUE_c04020 SM00450 Rhodanese Homology Domain ARUE_c04040 SM00450 Rhodanese Homology Domain ARUE_c04050 SM00450 Rhodanese Homology Domain ARUE_c04050 SM00849 Metallo-beta-lactamase superfamily ARUE_c04110 SM00354 helix_turn _helix lactose operon repressor ARUE_c04270 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c04310 SM00354 helix_turn _helix lactose operon repressor ARUE_c04350 SM00421 helix_turn_helix, Lux Regulon ARUE_c04350 SM00448 cheY-homologous receiver domain ARUE_c04360 SM00387 Histidine kinase-like ATPases ARUE_c04380 SM00248 ankyrin repeats ARUE_c04400 SM00882 Coenzyme A transferase ARUE_c04410 SM00882 Coenzyme A transferase ARUE_c04420 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c04440 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. ARUE_c04470 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c04480 SM00852 Probable molybdopterin binding domain ARUE_c04550 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c04550 SM00895 ARUE_c04550 ARUE_c04620 SM00421 helix_turn_helix, Lux Regulon ARUE_c04640 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ARUE_c04780 SM00507 HNH nucleases ARUE_c04790 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c04880 SM00422 helix_turn_helix, mercury resistance ARUE_c04910 SM00354 helix_turn _helix lactose operon repressor ARUE_c05000 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ARUE_c05030 SM00382 ATPases associated with a variety of cellular activities ARUE_c05050 SM00354 helix_turn _helix lactose operon repressor ARUE_c05080 SM00382 ATPases associated with a variety of cellular activities ARUE_c05170 SM00421 helix_turn_helix, Lux Regulon ARUE_c05170 SM00448 cheY-homologous receiver domain ARUE_c05260 SM00382 ATPases associated with a variety of cellular activities ARUE_c05310 SM00788 Adenylosuccinate synthetase ARUE_c05600 SM00481 DNA polymerase alpha chain like domain ARUE_c05610 SM00354 helix_turn _helix lactose operon repressor ARUE_c05620 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_c05620 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ARUE_c05640 SM00382 ATPases associated with a variety of cellular activities ARUE_c05720 SM00812 Alpha-L-fucosidase ARUE_c05730 SM00507 HNH nucleases ARUE_c05760 SM00881 CoA binding domain ARUE_c05840 SM00903 Flavin reductase like domain ARUE_c05900 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c05900 SM00895 ARUE_c05900 ARUE_c05930 SM00267 diguanylate cyclase ARUE_c05950 SM00052 Putative diguanylate phosphodiesterase ARUE_c05950 SM00267 diguanylate cyclase ARUE_c05970 SM01211 ARUE_c05970 ARUE_c06060 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c06080 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c06100 SM00382 ATPases associated with a variety of cellular activities ARUE_c06140 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ARUE_c06220 SM01217 ARUE_c06220 ARUE_c06290 SM00493 ARUE_c06290 ARUE_c06300 SM00382 ATPases associated with a variety of cellular activities ARUE_c06380 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c06480 SM00354 helix_turn _helix lactose operon repressor ARUE_c06520 SM00813 Alpha-L-arabinofuranosidase C-terminus ARUE_c06570 SM00640 Glycosyl hydrolases family 32 ARUE_c06590 SM00354 helix_turn _helix lactose operon repressor ARUE_c06690 SM00091 PAS domain ARUE_c06690 SM00387 Histidine kinase-like ATPases ARUE_c06700 SM00448 cheY-homologous receiver domain ARUE_c06850 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c06860 SM00093 SERine Proteinase INhibitors ARUE_c06910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ARUE_c06910 SM00387 Histidine kinase-like ATPases ARUE_c06910 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c06920 SM00448 cheY-homologous receiver domain ARUE_c06920 SM00862 Transcriptional regulatory protein, C terminal ARUE_c07040 SM00382 ATPases associated with a variety of cellular activities ARUE_c07080 SM00822 ARUE_c07080 ARUE_c07200 SM00506 Appr-1"-p processing enzyme ARUE_c07270 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c07320 SM00458 Ricin-type beta-trefoil ARUE_c07330 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ARUE_c07330 SM01232 ARUE_c07330 ARUE_c07340 SM00382 ATPases associated with a variety of cellular activities ARUE_c07340 SM00487 DEAD-like helicases superfamily ARUE_c07340 SM00490 helicase superfamily c-terminal domain ARUE_c07530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ARUE_c07530 SM00387 Histidine kinase-like ATPases ARUE_c07530 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c07540 SM00448 cheY-homologous receiver domain ARUE_c07540 SM00862 Transcriptional regulatory protein, C terminal ARUE_c07550 SM00862 Transcriptional regulatory protein, C terminal ARUE_c07660 SM00382 ATPases associated with a variety of cellular activities ARUE_c07730 SM00450 Rhodanese Homology Domain ARUE_c07760 SM01130 ARUE_c07760 ARUE_c07770 SM00382 ATPases associated with a variety of cellular activities ARUE_c07780 SM00382 ATPases associated with a variety of cellular activities ARUE_c07810 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c07810 SM00895 ARUE_c07810 ARUE_c07880 SM00487 DEAD-like helicases superfamily ARUE_c07880 SM00490 helicase superfamily c-terminal domain ARUE_c07970 SM00829 Enoylreductase ARUE_c08040 SM00344 helix_turn_helix ASNC type ARUE_c08140 SM00861 Transketolase, pyrimidine binding domain ARUE_c08180 SM00886 Stress responsive A/B Barrel Domain ARUE_c08250 SM00822 ARUE_c08250 ARUE_c08270 SM00382 ATPases associated with a variety of cellular activities ARUE_c08330 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c08340 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c08450 SM00855 Phosphoglycerate mutase family ARUE_c08470 SM00387 Histidine kinase-like ATPases ARUE_c08470 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c08480 SM00448 cheY-homologous receiver domain ARUE_c08480 SM00862 Transcriptional regulatory protein, C terminal ARUE_c08500 SM01058 CarD-like/TRCF domain ARUE_c08540 SM00840 ARUE_c08540 ARUE_c08550 SM00967 RNA 2'-O ribose methyltransferase substrate binding ARUE_c08570 SM00642 Alpha-amylase domain ARUE_c08610 SM00642 Alpha-amylase domain ARUE_c08620 SM00642 Alpha-amylase domain ARUE_c08630 SM00642 Alpha-amylase domain ARUE_c08700 SM00642 Alpha-amylase domain ARUE_c08740 SM00642 Alpha-amylase domain ARUE_c08790 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c08790 SM00895 ARUE_c08790 ARUE_c08820 SM00382 ATPases associated with a variety of cellular activities ARUE_c08940 SM00354 helix_turn _helix lactose operon repressor ARUE_c08980 SM00640 Glycosyl hydrolases family 32 ARUE_c08990 SM00640 Glycosyl hydrolases family 32 ARUE_c09010 SM00487 DEAD-like helicases superfamily ARUE_c09010 SM00490 helicase superfamily c-terminal domain ARUE_c09030 SM00855 Phosphoglycerate mutase family ARUE_c09120 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c09270 SM00507 HNH nucleases ARUE_c09290 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c09300 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c09430 SM00477 DNA/RNA non-specific endonuclease ARUE_c09430 SM00892 DNA/RNA non-specific endonuclease ARUE_c09480 SM00986 Uracil DNA glycosylase superfamily ARUE_c09480 SM00987 UreE urease accessory protein, C-terminal domain ARUE_c09510 SM00357 Cold shock protein domain ARUE_c09550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ARUE_c09550 SM00387 Histidine kinase-like ATPases ARUE_c09550 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c09560 SM00448 cheY-homologous receiver domain ARUE_c09560 SM00862 Transcriptional regulatory protein, C terminal ARUE_c09620 SM00487 DEAD-like helicases superfamily ARUE_c09620 SM00490 helicase superfamily c-terminal domain ARUE_c09700 SM00529 Helix-turn-helix diphteria tox regulatory element ARUE_c09700 SM00899 ARUE_c09700 ARUE_c09740 SM00507 HNH nucleases ARUE_c09760 SM00852 Probable molybdopterin binding domain ARUE_c09790 SM00872 Alpha mannosidase, middle domain ARUE_c09820 SM00382 ATPases associated with a variety of cellular activities ARUE_c09840 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_c09870 SM00382 ATPases associated with a variety of cellular activities ARUE_c09880 SM00382 ATPases associated with a variety of cellular activities ARUE_c09990 SM00881 CoA binding domain ARUE_c10030 SM00235 Zinc-dependent metalloprotease ARUE_c10100 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c10150 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c10150 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c10170 SM00382 ATPases associated with a variety of cellular activities ARUE_c10180 SM00382 ATPases associated with a variety of cellular activities ARUE_c10240 SM00382 ATPases associated with a variety of cellular activities ARUE_c10270 SM00387 Histidine kinase-like ATPases ARUE_c10270 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c10280 SM00448 cheY-homologous receiver domain ARUE_c10280 SM00862 Transcriptional regulatory protein, C terminal ARUE_c10320 SM01130 ARUE_c10320 ARUE_c10370 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c10440 SM00729 Elongator protein 3, MiaB family, Radical SAM ARUE_c10440 SM00876 Biotin and Thiamin Synthesis associated domain ARUE_c10470 SM00822 ARUE_c10470 ARUE_c10530 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c10530 SM00895 ARUE_c10530 ARUE_c10550 SM01120 ARUE_c10550 ARUE_c10630 SM00116 Domain in cystathionine beta-synthase and other proteins. ARUE_c10650 SM00316 Ribosomal protein S1-like RNA-binding domain ARUE_c10650 SM00732 Likely ribonuclease with RNase H fold. ARUE_c10750 SM00866 ARUE_c10750 ARUE_c10780 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c10850 SM00507 HNH nucleases ARUE_c10900 SM01217 ARUE_c10900 ARUE_c10940 SM00354 helix_turn _helix lactose operon repressor ARUE_c10960 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c10960 SM01012 ARUE_c10960 ARUE_c10980 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c10990 SM00829 Enoylreductase ARUE_c11030 SM00487 DEAD-like helicases superfamily ARUE_c11030 SM00490 helicase superfamily c-terminal domain ARUE_c11090 SM00357 Cold shock protein domain ARUE_c11130 SM00421 helix_turn_helix, Lux Regulon ARUE_c11170 SM00984 UDP binding domain ARUE_c11190 SM00740 ARUE_c11190 ARUE_c11190 SM00894 Excalibur calcium-binding domain ARUE_c11210 SM00422 helix_turn_helix, mercury resistance ARUE_c11320 SM00798 AICARFT/IMPCHase bienzyme ARUE_c11320 SM00851 MGS-like domain ARUE_c11360 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c11400 SM00382 ATPases associated with a variety of cellular activities ARUE_c11430 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c11430 SM00866 ARUE_c11430 ARUE_c11470 SM00382 ATPases associated with a variety of cellular activities ARUE_c11510 SM00382 ATPases associated with a variety of cellular activities ARUE_c11550 SM01005 Alanine racemase, C-terminal domain ARUE_c11650 SM00382 ATPases associated with a variety of cellular activities ARUE_c11700 SM00354 helix_turn _helix lactose operon repressor ARUE_c11860 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c11880 SM00829 Enoylreductase ARUE_c11900 SM00382 ATPases associated with a variety of cellular activities ARUE_c11940 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain ARUE_c11990 SM01192 ARUE_c11990 ARUE_c11990 SM01193 ARUE_c11990 ARUE_c12080 SM00046 Diacylglycerol kinase catalytic domain (presumed) ARUE_c12090 SM00382 ATPases associated with a variety of cellular activities ARUE_c12100 SM00382 ATPases associated with a variety of cellular activities ARUE_c12280 SM00670 Large family of predicted nucleotide-binding domains ARUE_c12370 SM00947 Carbonic anhydrase ARUE_c12430 SM01001 AIR carboxylase ARUE_c12530 SM00996 S-adenosyl-L-homocysteine hydrolase ARUE_c12530 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ARUE_c12610 SM00752 Horizontally Transferred TransMembrane Domain ARUE_c12690 SM00460 Transglutaminase/protease-like homologues ARUE_c12730 SM01208 ARUE_c12730 ARUE_c12740 SM00650 Ribosomal RNA adenine dimethylases ARUE_c12760 SM00382 ATPases associated with a variety of cellular activities ARUE_c12810 SM01400 ARUE_c12810 ARUE_c12850 SM00421 helix_turn_helix, Lux Regulon ARUE_c12860 SM00382 ATPases associated with a variety of cellular activities ARUE_c12860 SM00421 helix_turn_helix, Lux Regulon ARUE_c12940 SM00487 DEAD-like helicases superfamily ARUE_c12940 SM00490 helicase superfamily c-terminal domain ARUE_c12940 SM00982 ARUE_c12940 ARUE_c12940 SM01058 CarD-like/TRCF domain ARUE_c12970 SM01133 ARUE_c12970 ARUE_c13040 SM00354 helix_turn _helix lactose operon repressor ARUE_c13110 SM00862 Transcriptional regulatory protein, C terminal ARUE_c13160 SM00640 Glycosyl hydrolases family 32 ARUE_c13210 SM00849 Metallo-beta-lactamase superfamily ARUE_c13260 SM00878 Biotin carboxylase C-terminal domain ARUE_c13380 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain ARUE_c13390 SM00060 Fibronectin type 3 domain ARUE_c13420 SM00460 Transglutaminase/protease-like homologues ARUE_c13440 SM00331 Sigma factor PP2C-like phosphatases ARUE_c13440 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ARUE_c13460 SM00220 Serine/Threonine protein kinases, catalytic domain ARUE_c13480 SM00240 Forkhead associated domain ARUE_c13480 SM00382 ATPases associated with a variety of cellular activities ARUE_c13490 SM00292 breast cancer carboxy-terminal domain ARUE_c13490 SM00532 Ligase N family ARUE_c13540 SM00382 ATPases associated with a variety of cellular activities ARUE_c13590 SM00448 cheY-homologous receiver domain ARUE_c13600 SM00387 Histidine kinase-like ATPases ARUE_c13670 SM00845 GatB domain ARUE_c13730 SM00354 helix_turn _helix lactose operon repressor ARUE_c13760 SM00829 Enoylreductase ARUE_c13800 SM00776 ARUE_c13800 ARUE_c13850 SM00420 helix_turn_helix, Deoxyribose operon repressor ARUE_c13850 SM01134 ARUE_c13850 ARUE_c13860 SM00855 Phosphoglycerate mutase family ARUE_c14020 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ARUE_c14030 SM00400 zinc finger ARUE_c14030 SM00493 ARUE_c14030 ARUE_c14260 SM00448 cheY-homologous receiver domain ARUE_c14260 SM00850 LytTr DNA-binding domain ARUE_c14270 SM00387 Histidine kinase-like ATPases ARUE_c14300 SM00481 DNA polymerase alpha chain like domain ARUE_c14340 SM00344 helix_turn_helix ASNC type ARUE_c14360 SM00861 Transketolase, pyrimidine binding domain ARUE_c14390 SM00507 HNH nucleases ARUE_c14420 SM00878 Biotin carboxylase C-terminal domain ARUE_c14440 SM00882 Coenzyme A transferase ARUE_c14450 SM00882 Coenzyme A transferase ARUE_c14540 SM00354 helix_turn _helix lactose operon repressor ARUE_c14640 SM00382 ATPases associated with a variety of cellular activities ARUE_c14710 SM00316 Ribosomal protein S1-like RNA-binding domain ARUE_c14800 SM00904 Riboflavin kinase ARUE_c14810 SM01387 ARUE_c14810 ARUE_c14820 SM00316 Ribosomal protein S1-like RNA-binding domain ARUE_c14820 SM00322 K homology RNA-binding domain ARUE_c14860 SM00729 Elongator protein 3, MiaB family, Radical SAM ARUE_c14870 SM00448 cheY-homologous receiver domain ARUE_c14870 SM00862 Transcriptional regulatory protein, C terminal ARUE_c14880 SM00387 Histidine kinase-like ATPases ARUE_c14880 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c14900 SM00852 Probable molybdopterin binding domain ARUE_c14920 SM00852 Probable molybdopterin binding domain ARUE_c14980 SM01130 ARUE_c14980 ARUE_c14990 SM00849 Metallo-beta-lactamase superfamily ARUE_c15000 SM00382 ATPases associated with a variety of cellular activities ARUE_c15000 SM00843 ARUE_c15000 ARUE_c15030 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c15040 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c15060 SM00382 ATPases associated with a variety of cellular activities ARUE_c15080 SM00729 Elongator protein 3, MiaB family, Radical SAM ARUE_c15130 SM00487 DEAD-like helicases superfamily ARUE_c15130 SM00491 ARUE_c15130 ARUE_c15150 SM00257 Lysin motif ARUE_c15260 SM00967 RNA 2'-O ribose methyltransferase substrate binding ARUE_c15300 SM00729 Elongator protein 3, MiaB family, Radical SAM ARUE_c15350 SM00873 B3/4 domain ARUE_c15350 SM00874 tRNA synthetase B5 domain ARUE_c15350 SM00896 Ferredoxin-fold anticodon binding domain ARUE_c15390 SM00823 Phosphopantetheine attachment site ARUE_c15400 SM00829 Enoylreductase ARUE_c15420 SM00859 Semialdehyde dehydrogenase, NAD binding domain ARUE_c15510 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c15510 SM00478 endonuclease III ARUE_c15510 SM01009 AlkA N-terminal domain ARUE_c15620 SM00363 S4 RNA-binding domain ARUE_c15730 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c15730 SM00895 ARUE_c15730 ARUE_c15750 SM00421 helix_turn_helix, Lux Regulon ARUE_c15760 SM00448 cheY-homologous receiver domain ARUE_c15770 SM00387 Histidine kinase-like ATPases ARUE_c15820 SM00363 S4 RNA-binding domain ARUE_c15850 SM00563 Phosphate acyltransferases ARUE_c15860 SM00382 ATPases associated with a variety of cellular activities ARUE_c15880 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c15910 SM00240 Forkhead associated domain ARUE_c15920 SM00422 helix_turn_helix, mercury resistance ARUE_c15940 SM00422 helix_turn_helix, mercury resistance ARUE_c15960 SM00878 Biotin carboxylase C-terminal domain ARUE_c16020 SM00563 Phosphate acyltransferases ARUE_c16040 SM00220 Serine/Threonine protein kinases, catalytic domain ARUE_c16040 SM00740 ARUE_c16040 ARUE_c16050 SM00257 Lysin motif ARUE_c16240 SM00864 Tubulin/FtsZ family, GTPase domain ARUE_c16240 SM00865 Tubulin/FtsZ family, C-terminal domain ARUE_c16320 SM00481 DNA polymerase alpha chain like domain ARUE_c16330 SM00903 Flavin reductase like domain ARUE_c16420 SM01230 ARUE_c16420 ARUE_c16480 SM01230 ARUE_c16480 ARUE_c16510 SM00729 Elongator protein 3, MiaB family, Radical SAM ARUE_c16550 SM00245 tail specific protease ARUE_c16670 SM00387 Histidine kinase-like ATPases ARUE_c16670 SM00433 TopoisomeraseII ARUE_c16740 SM00382 ATPases associated with a variety of cellular activities ARUE_c16780 SM00434 DNA Topoisomerase IV ARUE_c16790 SM00881 CoA binding domain ARUE_c16950 SM00861 Transketolase, pyrimidine binding domain ARUE_c17020 SM00341 Helicase and RNase D C-terminal ARUE_c17020 SM00474 3'-5' exonuclease ARUE_c17050 SM00822 ARUE_c17050 ARUE_c17120 SM00450 Rhodanese Homology Domain ARUE_c17480 SM00448 cheY-homologous receiver domain ARUE_c17480 SM01012 ARUE_c17480 ARUE_c17520 SM00028 Tetratricopeptide repeats ARUE_c17630 SM00507 HNH nucleases ARUE_c17970 SM00825 Beta-ketoacyl synthase ARUE_c18000 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c18130 SM00822 ARUE_c18130 ARUE_c18180 SM00382 ATPases associated with a variety of cellular activities ARUE_c18350 SM00822 ARUE_c18350 ARUE_c18390 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c18400 SM00822 ARUE_c18400 ARUE_c18440 SM01217 ARUE_c18440 ARUE_c18470 SM00354 helix_turn _helix lactose operon repressor ARUE_c18640 SM01120 ARUE_c18640 ARUE_c18660 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c18660 SM00895 ARUE_c18660 ARUE_c18700 SM01217 ARUE_c18700 ARUE_c18720 SM01217 ARUE_c18720 ARUE_c18980 SM00822 ARUE_c18980 ARUE_c19240 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c19300 SM00382 ATPases associated with a variety of cellular activities ARUE_c19430 SM00829 Enoylreductase ARUE_c19470 SM00849 Metallo-beta-lactamase superfamily ARUE_c19470 SM01027 Beta-Casp domain ARUE_c19490 SM00421 helix_turn_helix, Lux Regulon ARUE_c19490 SM00448 cheY-homologous receiver domain ARUE_c19500 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c19500 SM00387 Histidine kinase-like ATPases ARUE_c19530 SM00829 Enoylreductase ARUE_c19670 SM00344 helix_turn_helix ASNC type ARUE_c19700 SM00822 ARUE_c19700 ARUE_c19770 SM00354 helix_turn _helix lactose operon repressor ARUE_c19830 SM00822 ARUE_c19830 ARUE_c19900 SM00903 Flavin reductase like domain ARUE_c19980 SM01060 ARUE_c19980 ARUE_c20030 SM00052 Putative diguanylate phosphodiesterase ARUE_c20040 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c20070 SM00100 Cyclic nucleotide-monophosphate binding domain ARUE_c20100 SM00271 DnaJ molecular chaperone homology domain ARUE_c20120 SM00382 ATPases associated with a variety of cellular activities ARUE_c20120 SM01086 C-terminal, D2-small domain, of ClpB protein ARUE_c20160 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c20240 SM00382 ATPases associated with a variety of cellular activities ARUE_c20290 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c20320 SM01217 ARUE_c20320 ARUE_c20350 SM00829 Enoylreductase ARUE_c20390 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c20390 SM00866 ARUE_c20390 ARUE_c20450 SM00861 Transketolase, pyrimidine binding domain ARUE_c20480 SM00382 ATPases associated with a variety of cellular activities ARUE_c20540 SM01092 CO dehydrogenase flavoprotein C-terminal domain ARUE_c20560 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ARUE_c20690 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c20770 SM00855 Phosphoglycerate mutase family ARUE_c20780 SM00382 ATPases associated with a variety of cellular activities ARUE_c20840 SM00354 helix_turn _helix lactose operon repressor ARUE_c20880 SM00382 ATPases associated with a variety of cellular activities ARUE_c20890 SM00382 ATPases associated with a variety of cellular activities ARUE_c20900 SM00640 Glycosyl hydrolases family 32 ARUE_c20910 SM00640 Glycosyl hydrolases family 32 ARUE_c20930 SM00382 ATPases associated with a variety of cellular activities ARUE_c21100 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c21100 SM00895 ARUE_c21100 ARUE_c21140 SM00382 ATPases associated with a variety of cellular activities ARUE_c21160 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_c21200 SM01329 ARUE_c21200 ARUE_c21250 SM00382 ATPases associated with a variety of cellular activities ARUE_c21270 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c21270 SM01012 ARUE_c21270 ARUE_c21280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c21280 SM01012 ARUE_c21280 ARUE_c21400 SM00354 helix_turn _helix lactose operon repressor ARUE_c21430 SM00382 ATPases associated with a variety of cellular activities ARUE_c21490 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c21490 SM00866 ARUE_c21490 ARUE_c21580 SM00357 Cold shock protein domain ARUE_c21640 SM00382 ATPases associated with a variety of cellular activities ARUE_c21680 SM00382 ATPases associated with a variety of cellular activities ARUE_c21800 SM00327 von Willebrand factor (vWF) type A domain ARUE_c21860 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ARUE_c21860 SM00475 5'-3' exonuclease ARUE_c21910 SM00507 HNH nucleases ARUE_c21930 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c21940 SM00829 Enoylreductase ARUE_c21950 SM00487 DEAD-like helicases superfamily ARUE_c21950 SM00490 helicase superfamily c-terminal domain ARUE_c21950 SM00847 Helicase associated domain (HA2) Add an annotation ARUE_c22000 SM00838 Elongation factor G C-terminus ARUE_c22000 SM00889 Elongation factor G, domain IV ARUE_c22060 SM00382 ATPases associated with a variety of cellular activities ARUE_c22100 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c22100 SM00866 ARUE_c22100 ARUE_c22200 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ARUE_c22200 SM00474 3'-5' exonuclease ARUE_c22200 SM00475 5'-3' exonuclease ARUE_c22200 SM00482 DNA polymerase A domain ARUE_c22240 SM00316 Ribosomal protein S1-like RNA-binding domain ARUE_c22270 SM00487 DEAD-like helicases superfamily ARUE_c22270 SM00490 helicase superfamily c-terminal domain ARUE_c22330 SM00487 DEAD-like helicases superfamily ARUE_c22330 SM00490 helicase superfamily c-terminal domain ARUE_c22360 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c22370 SM00382 ATPases associated with a variety of cellular activities ARUE_c22390 SM00563 Phosphate acyltransferases ARUE_c22400 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ARUE_c22400 SM00465 GIY-YIG type nucleases (URI domain) ARUE_c22450 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ARUE_c22530 SM00861 Transketolase, pyrimidine binding domain ARUE_c22580 SM00382 ATPases associated with a variety of cellular activities ARUE_c22630 SM00382 ATPases associated with a variety of cellular activities ARUE_c22690 SM00382 ATPases associated with a variety of cellular activities ARUE_c22710 SM00382 ATPases associated with a variety of cellular activities ARUE_c22760 SM00822 ARUE_c22760 ARUE_c22780 SM00382 ATPases associated with a variety of cellular activities ARUE_c22810 SM00382 ATPases associated with a variety of cellular activities ARUE_c22900 SM00460 Transglutaminase/protease-like homologues ARUE_c22970 SM00822 ARUE_c22970 ARUE_c23290 SM00382 ATPases associated with a variety of cellular activities ARUE_c23410 SM00487 DEAD-like helicases superfamily ARUE_c23410 SM00490 helicase superfamily c-terminal domain ARUE_c23410 SM01142 ARUE_c23410 ARUE_c23450 SM00244 prohibitin homologues ARUE_c23660 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c23660 SM00866 ARUE_c23660 ARUE_c23800 SM00917 LeuA allosteric (dimerisation) domain ARUE_c23840 SM00116 Domain in cystathionine beta-synthase and other proteins. ARUE_c23840 SM01091 Transporter associated domain ARUE_c23870 SM00909 Sporulation and spore germination ARUE_c23890 SM00271 DnaJ molecular chaperone homology domain ARUE_c23930 SM00729 Elongator protein 3, MiaB family, Radical SAM ARUE_c23940 SM00838 Elongation factor G C-terminus ARUE_c23990 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ARUE_c24160 SM01409 ARUE_c24160 ARUE_c24170 SM00072 Guanylate kinase homologues. ARUE_c24190 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ARUE_c24200 SM00851 MGS-like domain ARUE_c24200 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ARUE_c24210 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ARUE_c24280 SM00841 Elongation factor P, C-terminal ARUE_c24280 SM01185 ARUE_c24280 ARUE_c24350 SM00732 Likely ribonuclease with RNase H fold. ARUE_c24360 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ARUE_c24390 SM00363 S4 RNA-binding domain ARUE_c24390 SM01390 ARUE_c24390 ARUE_c24400 SM00382 ATPases associated with a variety of cellular activities ARUE_c24480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ARUE_c24480 SM00954 Region found in RelA / SpoT proteins ARUE_c24510 SM01323 ARUE_c24510 ARUE_c24520 SM00382 ATPases associated with a variety of cellular activities ARUE_c24530 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ARUE_c24590 SM00854 Bacterial capsule synthesis protein PGA_cap ARUE_c24640 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ARUE_c24650 SM00481 DNA polymerase alpha chain like domain ARUE_c24720 SM00829 Enoylreductase ARUE_c24730 SM00849 Metallo-beta-lactamase superfamily ARUE_c24830 SM00382 ATPases associated with a variety of cellular activities ARUE_c24850 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ARUE_c24860 SM00822 ARUE_c24860 ARUE_c24910 SM00825 Beta-ketoacyl synthase ARUE_c25000 SM00327 von Willebrand factor (vWF) type A domain ARUE_c25010 SM00327 von Willebrand factor (vWF) type A domain ARUE_c25040 SM00382 ATPases associated with a variety of cellular activities ARUE_c25190 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ARUE_c25240 SM00316 Ribosomal protein S1-like RNA-binding domain ARUE_c25250 SM00756 ARUE_c25250 ARUE_c25260 SM00562 ARUE_c25260 ARUE_c25330 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ARUE_c25330 SM01232 ARUE_c25330 ARUE_c25350 SM00382 ATPases associated with a variety of cellular activities ARUE_c25350 SM00994 ClpX C4-type zinc finger ARUE_c25350 SM01086 C-terminal, D2-small domain, of ClpB protein ARUE_c25420 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ARUE_c25420 SM01232 ARUE_c25420 ARUE_c25510 SM00382 ATPases associated with a variety of cellular activities ARUE_c25600 SM00479 ARUE_c25600 ARUE_c25660 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ARUE_c25740 SM01350 ARUE_c25740 ARUE_c25750 SM00895 ARUE_c25750 ARUE_c25790 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ARUE_c25820 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c25900 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ARUE_c25930 SM00825 Beta-ketoacyl synthase ARUE_c25970 SM00382 ATPases associated with a variety of cellular activities ARUE_c26130 SM00382 ATPases associated with a variety of cellular activities ARUE_c26130 SM00962 SRP54-type protein, GTPase domain ARUE_c26130 SM00963 SRP54-type protein, helical bundle domain ARUE_c26150 SM00938 Nitrogen regulatory protein P-II ARUE_c26180 SM00382 ATPases associated with a variety of cellular activities ARUE_c26180 SM00962 SRP54-type protein, GTPase domain ARUE_c26180 SM00963 SRP54-type protein, helical bundle domain ARUE_c26190 SM00968 SMC proteins Flexible Hinge Domain ARUE_c26240 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ARUE_c26240 SM01232 ARUE_c26240 ARUE_c26250 SM00358 Double-stranded RNA binding motif ARUE_c26250 SM00535 Ribonuclease III family ARUE_c26320 SM00487 DEAD-like helicases superfamily ARUE_c26320 SM00490 helicase superfamily c-terminal domain ARUE_c26330 SM01120 ARUE_c26330 ARUE_c26380 SM00563 Phosphate acyltransferases ARUE_c26420 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c26510 SM00849 Metallo-beta-lactamase superfamily ARUE_c26530 SM01329 ARUE_c26530 ARUE_c26550 SM00421 helix_turn_helix, Lux Regulon ARUE_c26550 SM00448 cheY-homologous receiver domain ARUE_c26560 SM00382 ATPases associated with a variety of cellular activities ARUE_c26590 SM00382 ATPases associated with a variety of cellular activities ARUE_c26710 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c26780 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c26790 SM00460 Transglutaminase/protease-like homologues ARUE_c26910 SM00344 helix_turn_helix ASNC type ARUE_c26940 SM00861 Transketolase, pyrimidine binding domain ARUE_c27000 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c27030 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c27050 SM00382 ATPases associated with a variety of cellular activities ARUE_c27190 SM00479 ARUE_c27190 ARUE_c27210 SM00382 ATPases associated with a variety of cellular activities ARUE_c27320 SM00487 DEAD-like helicases superfamily ARUE_c27360 SM00382 ATPases associated with a variety of cellular activities ARUE_c27450 SM00357 Cold shock protein domain ARUE_c27500 SM00382 ATPases associated with a variety of cellular activities ARUE_c27640 SM00937 ARUE_c27640 ARUE_c27650 SM00357 Cold shock protein domain ARUE_c27650 SM00382 ATPases associated with a variety of cellular activities ARUE_c27650 SM00959 Rho termination factor, N-terminal domain ARUE_c27700 SM00836 DALR anticodon binding domain ARUE_c27700 SM01016 Arginyl tRNA synthetase N terminal dom ARUE_c27710 SM00900 ARUE_c27710 ARUE_c27770 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c27790 SM00420 helix_turn_helix, Deoxyribose operon repressor ARUE_c27800 SM00382 ATPases associated with a variety of cellular activities ARUE_c27800 SM00487 DEAD-like helicases superfamily ARUE_c27800 SM00490 helicase superfamily c-terminal domain ARUE_c27800 SM00847 Helicase associated domain (HA2) Add an annotation ARUE_c27820 SM00829 Enoylreductase ARUE_c27830 SM00450 Rhodanese Homology Domain ARUE_c27850 SM00849 Metallo-beta-lactamase superfamily ARUE_c27880 SM00382 ATPases associated with a variety of cellular activities ARUE_c27900 SM00116 Domain in cystathionine beta-synthase and other proteins. ARUE_c27910 SM01091 Transporter associated domain ARUE_c27920 SM00861 Transketolase, pyrimidine binding domain ARUE_c28050 SM00529 Helix-turn-helix diphteria tox regulatory element ARUE_c28050 SM00899 ARUE_c28050 ARUE_c28080 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ARUE_c28120 SM00382 ATPases associated with a variety of cellular activities ARUE_c28130 SM00937 ARUE_c28130 ARUE_c28210 SM00641 Glycosyl hydrolases family 25 ARUE_c28290 SM00382 ATPases associated with a variety of cellular activities ARUE_c28360 SM00382 ATPases associated with a variety of cellular activities ARUE_c28380 SM00387 Histidine kinase-like ATPases ARUE_c28410 SM00858 ARUE_c28410 ARUE_c28450 SM00957 SecA DEAD-like domain ARUE_c28450 SM00958 SecA preprotein cross-linking domain ARUE_c28490 SM00909 Sporulation and spore germination ARUE_c28500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ARUE_c28500 SM00387 Histidine kinase-like ATPases ARUE_c28500 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c28510 SM00448 cheY-homologous receiver domain ARUE_c28510 SM00862 Transcriptional regulatory protein, C terminal ARUE_c28590 SM00830 Chorismate mutase type II ARUE_c28600 SM00382 ATPases associated with a variety of cellular activities ARUE_c28690 SM00046 Diacylglycerol kinase catalytic domain (presumed) ARUE_c28700 SM00271 DnaJ molecular chaperone homology domain ARUE_c28770 SM00893 Electron transfer flavoprotein domain ARUE_c28780 SM00893 Electron transfer flavoprotein domain ARUE_c28790 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ARUE_c28820 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c28820 SM00866 ARUE_c28820 ARUE_c28890 SM00341 Helicase and RNase D C-terminal ARUE_c28950 SM00479 ARUE_c28950 ARUE_c28960 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_c28980 SM00382 ATPases associated with a variety of cellular activities ARUE_c29020 SM01004 Delta-aminolevulinic acid dehydratase ARUE_c29100 SM00450 Rhodanese Homology Domain ARUE_c29210 SM00955 ARUE_c29210 ARUE_c29220 SM00487 DEAD-like helicases superfamily ARUE_c29220 SM00490 helicase superfamily c-terminal domain ARUE_c29260 SM01011 Aminopeptidase P, N-terminal domain ARUE_c29280 SM00116 Domain in cystathionine beta-synthase and other proteins. ARUE_c29280 SM00924 MgtE intracellular N domain ARUE_c29380 SM00382 ATPases associated with a variety of cellular activities ARUE_c29390 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_c29520 SM00838 Elongation factor G C-terminus ARUE_c29540 SM00382 ATPases associated with a variety of cellular activities ARUE_c29710 SM00382 ATPases associated with a variety of cellular activities ARUE_c29820 SM00344 helix_turn_helix ASNC type ARUE_c29840 SM00344 helix_turn_helix ASNC type ARUE_c30070 SM00834 Putative regulatory protein ARUE_c30080 SM00858 ARUE_c30080 ARUE_c30180 SM01240 ARUE_c30180 ARUE_c30190 SM00382 ATPases associated with a variety of cellular activities ARUE_c30200 SM00116 Domain in cystathionine beta-synthase and other proteins. ARUE_c30200 SM01240 ARUE_c30200 ARUE_c30250 SM00421 helix_turn_helix, Lux Regulon ARUE_c30270 SM00883 Chaperonin 10 Kd subunit ARUE_c30310 SM00833 Cobalamin synthesis protein cobW C-terminal domain ARUE_c30380 SM01005 Alanine racemase, C-terminal domain ARUE_c30460 SM00642 Alpha-amylase domain ARUE_c30470 SM00642 Alpha-amylase domain ARUE_c30480 SM00642 Alpha-amylase domain ARUE_c30680 SM00662 RNA polymerases D ARUE_c30870 SM01374 ARUE_c30870 ARUE_c30910 SM00322 K homology RNA-binding domain ARUE_c30940 SM01382 ARUE_c30940 ARUE_c30940 SM01383 ARUE_c30940 ARUE_c30980 SM01403 ARUE_c30980 ARUE_c31020 SM00838 Elongation factor G C-terminus ARUE_c31020 SM00889 Elongation factor G, domain IV ARUE_c31050 SM00663 RNA polymerase I subunit A N-terminus ARUE_c31140 SM00649 Ribosomal protein L11/L12 ARUE_c31150 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ARUE_c31150 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ARUE_c31190 SM00421 helix_turn_helix, Lux Regulon ARUE_c31190 SM00448 cheY-homologous receiver domain ARUE_c31280 SM00248 ankyrin repeats ARUE_c31330 SM00862 Transcriptional regulatory protein, C terminal ARUE_c31360 SM00855 Phosphoglycerate mutase family ARUE_c31430 SM00859 Semialdehyde dehydrogenase, NAD binding domain ARUE_c31550 SM00382 ATPases associated with a variety of cellular activities ARUE_c31590 SM00642 Alpha-amylase domain ARUE_c31680 SM00257 Lysin motif ARUE_c31690 SM00487 DEAD-like helicases superfamily ARUE_c31690 SM00490 helicase superfamily c-terminal domain ARUE_c31720 SM00448 cheY-homologous receiver domain ARUE_c31720 SM00862 Transcriptional regulatory protein, C terminal ARUE_c31730 SM00387 Histidine kinase-like ATPases ARUE_c31730 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c31820 SM01038 Beta galactosidase small chain ARUE_c31870 SM00116 Domain in cystathionine beta-synthase and other proteins. ARUE_c31900 SM00382 ATPases associated with a variety of cellular activities ARUE_c31960 SM00382 ATPases associated with a variety of cellular activities ARUE_c32080 SM01060 ARUE_c32080 ARUE_c32120 SM00829 Enoylreductase ARUE_c32140 SM00862 Transcriptional regulatory protein, C terminal ARUE_c32220 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c32220 SM00895 ARUE_c32220 ARUE_c32230 SM00450 Rhodanese Homology Domain ARUE_c32230 SM00849 Metallo-beta-lactamase superfamily ARUE_c32350 SM00382 ATPases associated with a variety of cellular activities ARUE_c32510 SM00860 SMI1 / KNR4 family ARUE_c32570 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_c32590 SM00382 ATPases associated with a variety of cellular activities ARUE_c32630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ARUE_c32670 SM00354 helix_turn _helix lactose operon repressor ARUE_c32680 SM00640 Glycosyl hydrolases family 32 ARUE_c32720 SM00014 Acid phosphatase homologues ARUE_c32790 SM00849 Metallo-beta-lactamase superfamily ARUE_c32860 SM01091 Transporter associated domain ARUE_c32940 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c32990 SM00861 Transketolase, pyrimidine binding domain ARUE_c33010 SM00344 helix_turn_helix ASNC type ARUE_c33150 SM00984 UDP binding domain ARUE_c33440 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c33500 SM00894 Excalibur calcium-binding domain ARUE_c33560 SM00495 Chitin-binding domain type 3 ARUE_c33650 SM00226 Low molecular weight phosphatase family ARUE_c33660 SM00257 Lysin motif ARUE_c33710 SM00091 PAS domain ARUE_c33710 SM00387 Histidine kinase-like ATPases ARUE_c33710 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c33710 SM00448 cheY-homologous receiver domain ARUE_c33720 SM00267 diguanylate cyclase ARUE_c33720 SM00448 cheY-homologous receiver domain ARUE_c33760 SM00387 Histidine kinase-like ATPases ARUE_c33760 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c33780 SM00052 Putative diguanylate phosphodiesterase ARUE_c33780 SM00267 diguanylate cyclase ARUE_c33880 SM00354 helix_turn _helix lactose operon repressor ARUE_c34050 SM00382 ATPases associated with a variety of cellular activities ARUE_c34090 SM00382 ATPases associated with a variety of cellular activities ARUE_c34230 SM00421 helix_turn_helix, Lux Regulon ARUE_c34290 SM00855 Phosphoglycerate mutase family ARUE_c34300 SM00867 YceI-like domain ARUE_c34330 SM00881 CoA binding domain ARUE_c34540 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ARUE_c34550 SM01130 ARUE_c34550 ARUE_c34580 SM00354 helix_turn _helix lactose operon repressor ARUE_c34590 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c34590 SM00895 ARUE_c34590 ARUE_c34610 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ARUE_c34620 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c34710 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ARUE_c34710 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ARUE_c34710 SM00493 ARUE_c34710 ARUE_c34720 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c34760 SM00450 Rhodanese Homology Domain ARUE_c34780 SM00487 DEAD-like helicases superfamily ARUE_c34780 SM00490 helicase superfamily c-terminal domain ARUE_c34860 SM00482 DNA polymerase A domain ARUE_c34890 SM00478 endonuclease III ARUE_c34890 SM00525 ARUE_c34890 ARUE_c34920 SM00420 helix_turn_helix, Deoxyribose operon repressor ARUE_c34920 SM01134 ARUE_c34920 ARUE_c34930 SM00382 ATPases associated with a variety of cellular activities ARUE_c34950 SM00354 helix_turn _helix lactose operon repressor ARUE_c35030 SM00100 Cyclic nucleotide-monophosphate binding domain ARUE_c35030 SM00419 helix_turn_helix, cAMP Regulatory protein ARUE_c35140 SM00382 ATPases associated with a variety of cellular activities ARUE_c35150 SM00382 ATPases associated with a variety of cellular activities ARUE_c35170 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c35190 SM01209 ARUE_c35190 ARUE_c35190 SM01210 ARUE_c35190 ARUE_c35230 SM00822 ARUE_c35230 ARUE_c35300 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ARUE_c35420 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c35430 SM00919 Malic enzyme, NAD binding domain ARUE_c35430 SM01274 ARUE_c35430 ARUE_c35520 SM00387 Histidine kinase-like ATPases ARUE_c35580 SM00947 Carbonic anhydrase ARUE_c35650 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c35820 SM00382 ATPases associated with a variety of cellular activities ARUE_c35830 SM00382 ATPases associated with a variety of cellular activities ARUE_c35870 SM00880 ARUE_c35870 ARUE_c35870 SM01118 ARUE_c35870 ARUE_c35910 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c36030 SM00382 ATPases associated with a variety of cellular activities ARUE_c36180 SM00354 helix_turn _helix lactose operon repressor ARUE_c36250 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c36370 SM00862 Transcriptional regulatory protein, C terminal ARUE_c36390 SM00331 Sigma factor PP2C-like phosphatases ARUE_c36390 SM00448 cheY-homologous receiver domain ARUE_c36470 SM00014 Acid phosphatase homologues ARUE_c36490 SM00095 Transthyretin ARUE_c36570 SM00382 ATPases associated with a variety of cellular activities ARUE_c36570 SM01086 C-terminal, D2-small domain, of ClpB protein ARUE_c36590 SM00382 ATPases associated with a variety of cellular activities ARUE_c36730 SM00849 Metallo-beta-lactamase superfamily ARUE_c36740 SM00487 DEAD-like helicases superfamily ARUE_c36740 SM00490 helicase superfamily c-terminal domain ARUE_c36760 SM00422 helix_turn_helix, mercury resistance ARUE_c36780 SM00344 helix_turn_helix ASNC type ARUE_c36920 SM00382 ATPases associated with a variety of cellular activities ARUE_c36960 SM00487 DEAD-like helicases superfamily ARUE_c36960 SM00490 helicase superfamily c-terminal domain ARUE_c36990 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c36990 SM00895 ARUE_c36990 ARUE_c37090 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c37100 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c37110 SM00829 Enoylreductase ARUE_c37130 SM00861 Transketolase, pyrimidine binding domain ARUE_c37180 SM00822 ARUE_c37180 ARUE_c37190 SM00422 helix_turn_helix, mercury resistance ARUE_c37200 SM00271 DnaJ molecular chaperone homology domain ARUE_c37290 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c37420 SM00420 helix_turn_helix, Deoxyribose operon repressor ARUE_c37430 SM00564 beta-propeller repeat ARUE_c37530 SM00829 Enoylreductase ARUE_c37620 SM00226 Low molecular weight phosphatase family ARUE_c37630 SM00226 Low molecular weight phosphatase family ARUE_c37660 SM00226 Low molecular weight phosphatase family ARUE_c37670 SM00226 Low molecular weight phosphatase family ARUE_c37670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c37700 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c37730 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c37810 SM00354 helix_turn _helix lactose operon repressor ARUE_c37870 SM00226 Low molecular weight phosphatase family ARUE_c37890 SM00155 Phospholipase D. Active site motifs. ARUE_c37980 SM00450 Rhodanese Homology Domain ARUE_c38020 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c38050 SM01006 Siderophore biosynthesis protein domain ARUE_c38070 SM00382 ATPases associated with a variety of cellular activities ARUE_c38260 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ARUE_c38260 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ARUE_c38320 SM00354 helix_turn _helix lactose operon repressor ARUE_c38410 SM00354 helix_turn _helix lactose operon repressor ARUE_c38430 SM01007 Class II Aldolase and Adducin N-terminal domain ARUE_c38460 SM00354 helix_turn _helix lactose operon repressor ARUE_c38490 SM01007 Class II Aldolase and Adducin N-terminal domain ARUE_c38510 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c38570 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_c38660 SM00062 Bacterial periplasmic substrate-binding proteins ARUE_c38670 SM00382 ATPases associated with a variety of cellular activities ARUE_c38760 SM00411 bacterial (prokaryotic) histone like domain ARUE_c38830 SM00862 Transcriptional regulatory protein, C terminal ARUE_c38830 SM01043 Bacterial transcriptional activator domain ARUE_c38910 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c38960 SM00382 ATPases associated with a variety of cellular activities ARUE_c39090 SM00903 Flavin reductase like domain ARUE_c39200 SM00363 S4 RNA-binding domain ARUE_c39260 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c39260 SM00895 ARUE_c39260 ARUE_c39300 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c39300 SM00895 ARUE_c39300 ARUE_c39340 SM00812 Alpha-L-fucosidase ARUE_c39350 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ARUE_c39370 SM00822 ARUE_c39370 ARUE_c39390 SM00382 ATPases associated with a variety of cellular activities ARUE_c39460 SM00344 helix_turn_helix ASNC type ARUE_c39470 SM00344 helix_turn_helix ASNC type ARUE_c39510 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ARUE_c39550 SM00421 helix_turn_helix, Lux Regulon ARUE_c39550 SM00448 cheY-homologous receiver domain ARUE_c39570 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c39600 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c39600 SM00895 ARUE_c39600 ARUE_c39700 SM00919 Malic enzyme, NAD binding domain ARUE_c39700 SM01274 ARUE_c39700 ARUE_c39830 SM00382 ATPases associated with a variety of cellular activities ARUE_c39840 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c39890 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c39930 SM00382 ATPases associated with a variety of cellular activities ARUE_c39970 SM00382 ATPases associated with a variety of cellular activities ARUE_c40120 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ARUE_c40120 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ARUE_c40180 SM00382 ATPases associated with a variety of cellular activities ARUE_c40240 SM00909 Sporulation and spore germination ARUE_c40350 SM00861 Transketolase, pyrimidine binding domain ARUE_c40420 SM00855 Phosphoglycerate mutase family ARUE_c40460 SM00822 ARUE_c40460 ARUE_c40480 SM00797 Allophanate hydrolase subunit 2 ARUE_c40490 SM00796 Allophanate hydrolase subunit 1 ARUE_c40610 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c40610 SM00895 ARUE_c40610 ARUE_c40680 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c40680 SM00871 Bacterial transcription activator, effector binding domain ARUE_c40700 SM00822 ARUE_c40700 ARUE_c40810 SM00420 helix_turn_helix, Deoxyribose operon repressor ARUE_c40880 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ARUE_c40880 SM00387 Histidine kinase-like ATPases ARUE_c40880 SM00388 His Kinase A (phosphoacceptor) domain ARUE_c40900 SM00220 Serine/Threonine protein kinases, catalytic domain ARUE_c40960 SM00855 Phosphoglycerate mutase family ARUE_c41030 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c41050 SM01130 ARUE_c41050 ARUE_c41060 SM00829 Enoylreductase ARUE_c41150 SM00530 Helix-turn-helix XRE-family like proteins ARUE_c41180 SM00422 helix_turn_helix, mercury resistance ARUE_c41190 SM00507 HNH nucleases ARUE_c41210 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c41300 SM00155 Phospholipase D. Active site motifs. ARUE_c41330 SM00220 Serine/Threonine protein kinases, catalytic domain ARUE_c41350 SM00347 helix_turn_helix multiple antibiotic resistance protein ARUE_c41420 SM00729 Elongator protein 3, MiaB family, Radical SAM ARUE_c41600 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ARUE_c41600 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ARUE_c41790 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c41800 SM00882 Coenzyme A transferase ARUE_c41810 SM00882 Coenzyme A transferase ARUE_c41850 SM00998 Adenylosuccinate lyase C-terminus ARUE_c41900 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c41960 SM00267 diguanylate cyclase ARUE_c42050 SM01119 ARUE_c42050 ARUE_c42070 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c42210 SM00354 helix_turn _helix lactose operon repressor ARUE_c42280 SM00342 helix_turn_helix, arabinose operon control protein ARUE_c42320 SM00450 Rhodanese Homology Domain ARUE_c42330 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c42530 SM00421 helix_turn_helix, Lux Regulon ARUE_c42570 SM00345 helix_turn_helix gluconate operon transcriptional repressor ARUE_c42570 SM00895 ARUE_c42570 ARUE_c42580 SM00861 Transketolase, pyrimidine binding domain ARUE_c42630 SM01120 ARUE_c42630 ARUE_c42840 SM00046 Diacylglycerol kinase catalytic domain (presumed) ARUE_c42870 SM00346 helix_turn_helix isocitrate lyase regulation ARUE_c42880 SM00382 ATPases associated with a variety of cellular activities ARUE_c43020 SM00421 helix_turn_helix, Lux Regulon ARUE_c43020 SM00448 cheY-homologous receiver domain ARUE_c43050 SM00382 ATPases associated with a variety of cellular activities ARUE_c43060 SM00014 Acid phosphatase homologues ARUE_c43060 SM00046 Diacylglycerol kinase catalytic domain (presumed) ARUE_c43080 SM00420 helix_turn_helix, Deoxyribose operon repressor ARUE_c43080 SM01134 ARUE_c43080 ARUE_c43090 SM00382 ATPases associated with a variety of cellular activities ARUE_c43120 SM00776 ARUE_c43120 ARUE_c43130 SM00421 helix_turn_helix, Lux Regulon ARUE_c43130 SM00448 cheY-homologous receiver domain ARUE_c43140 SM00387 Histidine kinase-like ATPases ARUE_c43160 SM00382 ATPases associated with a variety of cellular activities ARUE_c43210 SM00855 Phosphoglycerate mutase family ARUE_c43220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ARUE_c43320 SM00470 ParB-like nuclease domain ARUE_c43350 SM00393 Putative single-stranded nucleic acids-binding domain ARUE_c43370 SM01234 ARUE_c43370