locus-tag class description ATC04_00100 PF02796 Helix-turn-helix domain of resolvase ATC04_00100 PF00239 Resolvase, N terminal domain ATC04_00110 PF12833 Helix-turn-helix domain ATC04_00110 PF01965 DJ-1/PfpI family ATC04_00130 PF02861 Clp amino terminal domain, pathogenicity island component ATC04_00130 PF17871 AAA lid domain ATC04_00130 PF07724 AAA domain (Cdc48 subfamily) ATC04_00130 PF00004 ATPase family associated with various cellular activities (AAA) ATC04_00130 PF10431 C-terminal, D2-small domain, of ClpB protein ATC04_00135 PF11774 Lsr2 ATC04_00140 PF01336 OB-fold nucleic acid binding domain ATC04_00140 PF00152 tRNA synthetases class II (D, K and N) ATC04_00145 PF01431 Peptidase family M13 ATC04_00145 PF05649 Peptidase family M13 ATC04_00150 PF00106 short chain dehydrogenase ATC04_00175 PF01381 Helix-turn-helix ATC04_00200 PF02569 Pantoate-beta-alanine ligase ATC04_00225 PF02152 Dihydroneopterin aldolase ATC04_00230 PF00809 Pterin binding enzyme ATC04_00235 PF01227 GTP cyclohydrolase I ATC04_00240 PF01434 Peptidase family M41 ATC04_00240 PF17862 AAA+ lid domain ATC04_00240 PF00004 ATPase family associated with various cellular activities (AAA) ATC04_00250 PF01171 PP-loop family ATC04_00250 PF09179 TilS substrate binding domain ATC04_00260 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ATC04_00265 PF00719 Inorganic pyrophosphatase ATC04_00275 PF02646 RmuC family ATC04_00280 PF01470 Pyroglutamyl peptidase ATC04_00310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATC04_00310 PF02403 Seryl-tRNA synthetase N-terminal domain ATC04_00315 PF00781 Diacylglycerol kinase catalytic domain ATC04_00320 PF00800 Prephenate dehydratase ATC04_00320 PF01842 ACT domain ATC04_00330 PF01425 Amidase ATC04_00335 PF00854 POT family ATC04_00340 PF13443 Cro/C1-type HTH DNA-binding domain ATC04_00355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATC04_00355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATC04_00355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATC04_00355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATC04_00360 PF00324 Amino acid permease ATC04_00365 PF00171 Aldehyde dehydrogenase family ATC04_00380 PF02110 Hydroxyethylthiazole kinase family ATC04_00385 PF02581 Thiamine monophosphate synthase ATC04_00390 PF03070 TENA/THI-4/PQQC family ATC04_00390 PF08543 Phosphomethylpyrimidine kinase ATC04_00390 PF02581 Thiamine monophosphate synthase ATC04_00395 PF00860 Permease family ATC04_00400 PF00083 Sugar (and other) transporter ATC04_00410 PF00890 FAD binding domain ATC04_00415 PF00083 Sugar (and other) transporter ATC04_00415 PF07690 Major Facilitator Superfamily ATC04_00425 PF00890 FAD binding domain ATC04_00430 PF09339 IclR helix-turn-helix domain ATC04_00430 PF01614 Bacterial transcriptional regulator ATC04_00440 PF03633 Glycosyl hydrolase family 65, C-terminal domain ATC04_00440 PF03632 Glycosyl hydrolase family 65 central catalytic domain ATC04_00440 PF03636 Glycosyl hydrolase family 65, N-terminal domain ATC04_00460 PF00294 pfkB family carbohydrate kinase ATC04_00470 PF00378 Enoyl-CoA hydratase/isomerase ATC04_00485 PF01738 Dienelactone hydrolase family ATC04_00490 PF01156 Inosine-uridine preferring nucleoside hydrolase ATC04_00495 PF00356 Bacterial regulatory proteins, lacI family ATC04_00520 PF16697 Inner membrane component of T3SS, cytoplasmic domain ATC04_00530 PF01098 Cell cycle protein ATC04_00535 PF00905 Penicillin binding protein transpeptidase domain ATC04_00540 PF00069 Protein kinase domain ATC04_00545 PF00069 Protein kinase domain ATC04_00545 PF03793 PASTA domain ATC04_00550 PF00117 Glutamine amidotransferase class-I ATC04_00555 PF04203 Sortase domain ATC04_00560 PF06781 Cell division protein CrgA ATC04_00565 PF00893 Small Multidrug Resistance protein ATC04_00570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_00570 PF03466 LysR substrate binding domain ATC04_00580 PF01694 Rhomboid family ATC04_00585 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ATC04_00600 PF01758 Sodium Bile acid symporter family ATC04_00605 PF00534 Glycosyl transferases group 1 ATC04_00605 PF13439 Glycosyltransferase Family 4 ATC04_00620 PF12089 Transmembrane domain of unknown function (DUF3566) ATC04_00625 PF00521 DNA gyrase/topoisomerase IV, subunit A ATC04_00625 PF03989 DNA gyrase C-terminal domain, beta-propeller ATC04_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_00630 PF00204 DNA gyrase B ATC04_00630 PF00986 DNA gyrase B subunit, carboxyl terminus ATC04_00630 PF01751 Toprim domain ATC04_00635 PF05258 Dna[CI] antecedent, DciA ATC04_00640 PF02463 RecF/RecN/SMC N terminal domain ATC04_00645 PF00712 DNA polymerase III beta subunit, N-terminal domain ATC04_00645 PF02767 DNA polymerase III beta subunit, central domain ATC04_00645 PF02768 DNA polymerase III beta subunit, C-terminal domain ATC04_00650 PF00308 Bacterial dnaA protein ATC04_00650 PF08299 Bacterial dnaA protein helix-turn-helix ATC04_00660 PF01809 Putative membrane protein insertion efficiency factor ATC04_00665 PF02096 60Kd inner membrane protein ATC04_00675 PF02527 rRNA small subunit methyltransferase G ATC04_00680 PF13614 AAA domain ATC04_00685 PF02195 ParB-like nuclease domain ATC04_00685 PF17762 HTH domain found in ParB protein ATC04_00690 PF00085 Thioredoxin ATC04_00695 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_00710 PF00293 NUDIX domain ATC04_00720 PF01658 Myo-inositol-1-phosphate synthase ATC04_00740 PF00535 Glycosyl transferase family 2 ATC04_00740 PF01501 Glycosyl transferase family 8 ATC04_00745 PF08666 SAF domain ATC04_00745 PF03102 NeuB family ATC04_00750 PF02348 Cytidylyltransferase ATC04_00770 PF00005 ABC transporter ATC04_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_00780 PF07730 Histidine kinase ATC04_00785 PF00072 Response regulator receiver domain ATC04_00785 PF00196 Bacterial regulatory proteins, luxR family ATC04_00795 PF02127 Aminopeptidase I zinc metalloprotease (M18) ATC04_00810 PF01266 FAD dependent oxidoreductase ATC04_00815 PF01757 Acyltransferase family ATC04_00820 PF01250 Ribosomal protein S6 ATC04_00825 PF00436 Single-strand binding protein family ATC04_00830 PF01084 Ribosomal protein S18 ATC04_00835 PF01281 Ribosomal protein L9, N-terminal domain ATC04_00835 PF03948 Ribosomal protein L9, C-terminal domain ATC04_00840 PF08543 Phosphomethylpyrimidine kinase ATC04_00870 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ATC04_00870 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ATC04_00875 PF07995 Glucose / Sorbosone dehydrogenase ATC04_00885 PF00501 AMP-binding enzyme ATC04_00885 PF13193 AMP-binding enzyme C-terminal domain ATC04_00890 PF13426 PAS domain ATC04_00890 PF00158 Sigma-54 interaction domain ATC04_00890 PF02954 Bacterial regulatory protein, Fis family ATC04_00920 PF01381 Helix-turn-helix ATC04_00925 PF01613 Flavin reductase like domain ATC04_00930 PF00772 DnaB-like helicase N terminal domain ATC04_00930 PF03796 DnaB-like helicase C terminal domain ATC04_00940 PF07690 Major Facilitator Superfamily ATC04_00955 PF05726 Pirin C-terminal cupin domain ATC04_00955 PF02678 Pirin ATC04_00960 PF01047 MarR family ATC04_01010 PF00576 HIUase/Transthyretin family ATC04_01015 PF01014 Uricase ATC04_01020 PF00860 Permease family ATC04_01025 PF00356 Bacterial regulatory proteins, lacI family ATC04_01035 PF00596 Class II Aldolase and Adducin N-terminal domain ATC04_01040 PF11762 L-arabinose isomerase C-terminal domain ATC04_01040 PF02610 L-arabinose isomerase ATC04_01045 PF13407 Periplasmic binding protein domain ATC04_01050 PF00005 ABC transporter ATC04_01055 PF02653 Branched-chain amino acid transport system / permease component ATC04_01060 PF01263 Aldose 1-epimerase ATC04_01065 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ATC04_01065 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ATC04_01070 PF00288 GHMP kinases N terminal domain ATC04_01070 PF08544 GHMP kinases C terminal ATC04_01070 PF10509 Galactokinase galactose-binding signature ATC04_01075 PF01370 NAD dependent epimerase/dehydratase family ATC04_01095 PF00324 Amino acid permease ATC04_01100 PF00795 Carbon-nitrogen hydrolase ATC04_01110 PF00730 HhH-GPD superfamily base excision DNA repair protein ATC04_01110 PF06029 AlkA N-terminal domain ATC04_01110 PF02805 Metal binding domain of Ada ATC04_01110 PF12833 Helix-turn-helix domain ATC04_01115 PF00106 short chain dehydrogenase ATC04_01130 PF07690 Major Facilitator Superfamily ATC04_01135 PF00324 Amino acid permease ATC04_01145 PF00480 ROK family ATC04_01150 PF16859 Tetracyclin repressor-like, C-terminal domain ATC04_01150 PF00440 Bacterial regulatory proteins, tetR family ATC04_01160 PF00005 ABC transporter ATC04_01160 PF00664 ABC transporter transmembrane region ATC04_01165 PF00890 FAD binding domain ATC04_01175 PF09339 IclR helix-turn-helix domain ATC04_01175 PF01614 Bacterial transcriptional regulator ATC04_01180 PF03949 Malic enzyme, NAD binding domain ATC04_01180 PF00390 Malic enzyme, N-terminal domain ATC04_01195 PF07883 Cupin domain ATC04_01195 PF05899 Protein of unknown function (DUF861) ATC04_01210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATC04_01220 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ATC04_01225 PF12697 Alpha/beta hydrolase family ATC04_01230 PF00111 2Fe-2S iron-sulfur cluster binding domain ATC04_01230 PF00970 Oxidoreductase FAD-binding domain ATC04_01230 PF00175 Oxidoreductase NAD-binding domain ATC04_01245 PF00355 Rieske [2Fe-2S] domain ATC04_01250 PF00890 FAD binding domain ATC04_01255 PF00378 Enoyl-CoA hydratase/isomerase ATC04_01255 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATC04_01255 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATC04_01260 PF00501 AMP-binding enzyme ATC04_01260 PF13193 AMP-binding enzyme C-terminal domain ATC04_01270 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATC04_01275 PF01758 Sodium Bile acid symporter family ATC04_01280 PF01022 Bacterial regulatory protein, arsR family ATC04_01290 PF00440 Bacterial regulatory proteins, tetR family ATC04_01290 PF17932 Tetracyclin repressor-like, C-terminal domain ATC04_01295 PF00561 alpha/beta hydrolase fold ATC04_01300 PF04303 PrpF protein ATC04_01305 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_01305 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATC04_01315 PF00355 Rieske [2Fe-2S] domain ATC04_01325 PF07690 Major Facilitator Superfamily ATC04_01330 PF07690 Major Facilitator Superfamily ATC04_01335 PF02803 Thiolase, C-terminal domain ATC04_01335 PF00108 Thiolase, N-terminal domain ATC04_01365 PF07690 Major Facilitator Superfamily ATC04_01385 PF02653 Branched-chain amino acid transport system / permease component ATC04_01390 PF12399 Branched-chain amino acid ATP-binding cassette transporter ATC04_01390 PF00005 ABC transporter ATC04_01395 PF00005 ABC transporter ATC04_01405 PF02803 Thiolase, C-terminal domain ATC04_01405 PF00108 Thiolase, N-terminal domain ATC04_01415 PF01144 Coenzyme A transferase ATC04_01430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_01430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_01435 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_01435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_01435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_01440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_01440 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_01440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_01445 PF00378 Enoyl-CoA hydratase/isomerase ATC04_01450 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_01450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_01450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_01460 PF02803 Thiolase, C-terminal domain ATC04_01460 PF00108 Thiolase, N-terminal domain ATC04_01480 PF03060 Nitronate monooxygenase ATC04_01490 PF01144 Coenzyme A transferase ATC04_01495 PF00378 Enoyl-CoA hydratase/isomerase ATC04_01510 PF01012 Electron transfer flavoprotein domain ATC04_01515 PF00766 Electron transfer flavoprotein FAD-binding domain ATC04_01515 PF01012 Electron transfer flavoprotein domain ATC04_01540 PF01613 Flavin reductase like domain ATC04_01545 PF07836 DmpG-like communication domain ATC04_01545 PF00682 HMGL-like ATC04_01555 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATC04_01560 PF01614 Bacterial transcriptional regulator ATC04_01560 PF09339 IclR helix-turn-helix domain ATC04_01565 PF07929 Plasmid pRiA4b ORF-3-like protein ATC04_01580 PF00766 Electron transfer flavoprotein FAD-binding domain ATC04_01580 PF01012 Electron transfer flavoprotein domain ATC04_01585 PF01012 Electron transfer flavoprotein domain ATC04_01590 PF00392 Bacterial regulatory proteins, gntR family ATC04_01590 PF07729 FCD domain ATC04_01595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATC04_01600 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_01605 PF00005 ABC transporter ATC04_01605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_01610 PF00005 ABC transporter ATC04_01610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_01615 PF00701 Dihydrodipicolinate synthetase family ATC04_01620 PF00480 ROK family ATC04_01625 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ATC04_01630 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase ATC04_01630 PF00754 F5/8 type C domain ATC04_01630 PF13088 BNR repeat-like domain ATC04_01635 PF00392 Bacterial regulatory proteins, gntR family ATC04_01635 PF07729 FCD domain ATC04_01640 PF00551 Formyl transferase ATC04_01645 PF01571 Aminomethyltransferase folate-binding domain ATC04_01645 PF16350 FAD dependent oxidoreductase central domain ATC04_01645 PF08669 Glycine cleavage T-protein C-terminal barrel domain ATC04_01645 PF01266 FAD dependent oxidoreductase ATC04_01655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ATC04_01655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ATC04_01660 PF00175 Oxidoreductase NAD-binding domain ATC04_01660 PF00111 2Fe-2S iron-sulfur cluster binding domain ATC04_01660 PF00970 Oxidoreductase FAD-binding domain ATC04_01665 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ATC04_01665 PF00355 Rieske [2Fe-2S] domain ATC04_01670 PF03466 LysR substrate binding domain ATC04_01670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_01675 PF00107 Zinc-binding dehydrogenase ATC04_01675 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_01685 PF01614 Bacterial transcriptional regulator ATC04_01685 PF09339 IclR helix-turn-helix domain ATC04_01690 PF08946 Osmosensory transporter coiled coil ATC04_01690 PF00083 Sugar (and other) transporter ATC04_01695 PF08946 Osmosensory transporter coiled coil ATC04_01695 PF00083 Sugar (and other) transporter ATC04_01700 PF00557 Metallopeptidase family M24 ATC04_01700 PF01321 Creatinase/Prolidase N-terminal domain ATC04_01705 PF02028 BCCT, betaine/carnitine/choline family transporter ATC04_01710 PF02633 Creatinine amidohydrolase ATC04_01720 PF07729 FCD domain ATC04_01720 PF00392 Bacterial regulatory proteins, gntR family ATC04_01725 PF00464 Serine hydroxymethyltransferase ATC04_01730 PF01266 FAD dependent oxidoreductase ATC04_01735 PF04267 Sarcosine oxidase, delta subunit family ATC04_01740 PF08669 Glycine cleavage T-protein C-terminal barrel domain ATC04_01740 PF01571 Aminomethyltransferase folate-binding domain ATC04_01740 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_01740 PF17806 Sarcosine oxidase A3 domain ATC04_01745 PF04268 Sarcosine oxidase, gamma subunit family ATC04_01750 PF00551 Formyl transferase ATC04_01775 PF13193 AMP-binding enzyme C-terminal domain ATC04_01775 PF00501 AMP-binding enzyme ATC04_01780 PF00535 Glycosyl transferase family 2 ATC04_01790 PF00989 PAS fold ATC04_01790 PF00990 Diguanylate cyclase, GGDEF domain ATC04_01790 PF01590 GAF domain ATC04_01790 PF00563 EAL domain ATC04_01795 PF00990 Diguanylate cyclase, GGDEF domain ATC04_01800 PF01740 STAS domain ATC04_01800 PF00916 Sulfate permease family ATC04_01815 PF02595 Glycerate kinase family ATC04_01820 PF00561 alpha/beta hydrolase fold ATC04_01825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_01825 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ATC04_01825 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_01855 PF03328 HpcH/HpaI aldolase/citrate lyase family ATC04_01865 PF00364 Biotin-requiring enzyme ATC04_01865 PF00289 Biotin carboxylase, N-terminal domain ATC04_01865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATC04_01865 PF02785 Biotin carboxylase C-terminal domain ATC04_01870 PF01039 Carboxyl transferase domain ATC04_01890 PF00128 Alpha amylase, catalytic domain ATC04_01895 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_01900 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_01900 PF14785 Maltose transport system permease protein MalF P2 domain ATC04_01915 PF07690 Major Facilitator Superfamily ATC04_01925 PF00005 ABC transporter ATC04_01930 PF01032 FecCD transport family ATC04_01935 PF01032 FecCD transport family ATC04_01940 PF01497 Periplasmic binding protein ATC04_01945 PF13302 Acetyltransferase (GNAT) domain ATC04_01965 PF00313 'Cold-shock' DNA-binding domain ATC04_01980 PF01177 Asp/Glu/Hydantoin racemase ATC04_01985 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ATC04_01990 PF01261 Xylose isomerase-like TIM barrel ATC04_01995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATC04_01995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATC04_02000 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATC04_02000 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_02000 PF00205 Thiamine pyrophosphate enzyme, central domain ATC04_02005 PF01979 Amidohydrolase family ATC04_02015 PF03631 Virulence factor BrkB ATC04_02035 PF03601 Conserved hypothetical protein 698 ATC04_02050 PF00672 HAMP domain ATC04_02050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_02050 PF00512 His Kinase A (phospho-acceptor) domain ATC04_02055 PF00486 Transcriptional regulatory protein, C terminal ATC04_02055 PF00072 Response regulator receiver domain ATC04_02065 PF01757 Acyltransferase family ATC04_02070 PF03992 Antibiotic biosynthesis monooxygenase ATC04_02075 PF01593 Flavin containing amine oxidoreductase ATC04_02080 PF00571 CBS domain ATC04_02080 PF03471 Transporter associated domain ATC04_02080 PF01595 Cyclin M transmembrane N-terminal domain ATC04_02085 PF01595 Cyclin M transmembrane N-terminal domain ATC04_02085 PF00571 CBS domain ATC04_02105 PF04960 Glutaminase ATC04_02110 PF00171 Aldehyde dehydrogenase family ATC04_02120 PF14759 Reductase C-terminal ATC04_02120 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_02125 PF00111 2Fe-2S iron-sulfur cluster binding domain ATC04_02135 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ATC04_02135 PF00391 PEP-utilising enzyme, mobile domain ATC04_02140 PF00391 PEP-utilising enzyme, mobile domain ATC04_02140 PF02896 PEP-utilising enzyme, TIM barrel domain ATC04_02140 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ATC04_02145 PF00067 Cytochrome P450 ATC04_02150 PF01614 Bacterial transcriptional regulator ATC04_02150 PF09339 IclR helix-turn-helix domain ATC04_02170 PF00296 Luciferase-like monooxygenase ATC04_02175 PF01268 Formate--tetrahydrofolate ligase ATC04_02190 PF01156 Inosine-uridine preferring nucleoside hydrolase ATC04_02205 PF12558 ATP-binding cassette cobalt transporter ATC04_02205 PF00005 ABC transporter ATC04_02220 PF00872 Transposase, Mutator family ATC04_02230 PF13276 HTH-like domain ATC04_02230 PF00665 Integrase core domain ATC04_02230 PF13333 Integrase core domain ATC04_02235 PF01527 Transposase ATC04_02240 PF00665 Integrase core domain ATC04_02265 PF01527 Transposase ATC04_02280 PF02538 Hydantoinase B/oxoprolinase ATC04_02285 PF05378 Hydantoinase/oxoprolinase N-terminal region ATC04_02285 PF01968 Hydantoinase/oxoprolinase ATC04_02290 PF17853 GGDEF-like domain ATC04_02290 PF07905 Purine catabolism regulatory protein-like family ATC04_02290 PF13556 PucR C-terminal helix-turn-helix domain ATC04_02300 PF07690 Major Facilitator Superfamily ATC04_02300 PF00083 Sugar (and other) transporter ATC04_02305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_02305 PF03466 LysR substrate binding domain ATC04_02310 PF07969 Amidohydrolase family ATC04_02315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_02315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATC04_02315 PF00205 Thiamine pyrophosphate enzyme, central domain ATC04_02320 PF00171 Aldehyde dehydrogenase family ATC04_02345 PF03441 FAD binding domain of DNA photolyase ATC04_02345 PF00875 DNA photolyase ATC04_02350 PF00578 AhpC/TSA family ATC04_02360 PF02585 GlcNAc-PI de-N-acetylase ATC04_02370 PF00171 Aldehyde dehydrogenase family ATC04_02380 PF04679 ATP dependent DNA ligase C terminal region ATC04_02380 PF01068 ATP dependent DNA ligase domain ATC04_02380 PF13298 DNA polymerase Ligase (LigD) ATC04_02385 PF02735 Ku70/Ku80 beta-barrel domain ATC04_02390 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_02390 PF13823 Alcohol dehydrogenase GroES-associated ATC04_02390 PF00107 Zinc-binding dehydrogenase ATC04_02415 PF00571 CBS domain ATC04_02425 PF00857 Isochorismatase family ATC04_02435 PF13520 Amino acid permease ATC04_02440 PF04239 Protein of unknown function (DUF421) ATC04_02450 PF01329 Pterin 4 alpha carbinolamine dehydratase ATC04_02465 PF02661 Fic/DOC family ATC04_02465 PF13784 Fic/DOC family N-terminal ATC04_02475 PF01435 Peptidase family M48 ATC04_02480 PF03965 Penicillinase repressor ATC04_02495 PF00664 ABC transporter transmembrane region ATC04_02495 PF00005 ABC transporter ATC04_02500 PF00664 ABC transporter transmembrane region ATC04_02500 PF00005 ABC transporter ATC04_02505 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_02505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_02505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_02510 PF13607 Succinyl-CoA ligase like flavodoxin domain ATC04_02510 PF13380 CoA binding domain ATC04_02510 PF00583 Acetyltransferase (GNAT) family ATC04_02515 PF17925 Tetracyclin repressor-like, C-terminal domain ATC04_02515 PF00440 Bacterial regulatory proteins, tetR family ATC04_02535 PF00171 Aldehyde dehydrogenase family ATC04_02540 PF07690 Major Facilitator Superfamily ATC04_02545 PF00011 Hsp20/alpha crystallin family ATC04_02580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_02580 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_02580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_02585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_02585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_02590 PF07690 Major Facilitator Superfamily ATC04_02595 PF00501 AMP-binding enzyme ATC04_02595 PF13193 AMP-binding enzyme C-terminal domain ATC04_02600 PF13452 N-terminal half of MaoC dehydratase ATC04_02625 PF01012 Electron transfer flavoprotein domain ATC04_02630 PF00766 Electron transfer flavoprotein FAD-binding domain ATC04_02630 PF01012 Electron transfer flavoprotein domain ATC04_02640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_02640 PF03466 LysR substrate binding domain ATC04_02655 PF00230 Major intrinsic protein ATC04_02660 PF00005 ABC transporter ATC04_02660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_02665 PF12911 N-terminal TM domain of oligopeptide transport permease C ATC04_02665 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_02670 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_02675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATC04_02680 PF07690 Major Facilitator Superfamily ATC04_02685 PF02517 CPBP intramembrane metalloprotease ATC04_02690 PF07690 Major Facilitator Superfamily ATC04_02700 PF01554 MatE ATC04_02705 PF07729 FCD domain ATC04_02705 PF00392 Bacterial regulatory proteins, gntR family ATC04_02710 PF00083 Sugar (and other) transporter ATC04_02710 PF07690 Major Facilitator Superfamily ATC04_02715 PF01070 FMN-dependent dehydrogenase ATC04_02730 PF13520 Amino acid permease ATC04_02735 PF03737 Aldolase/RraA ATC04_02755 PF01329 Pterin 4 alpha carbinolamine dehydratase ATC04_02760 PF13520 Amino acid permease ATC04_02765 PF01872 RibD C-terminal domain ATC04_02770 PF00732 GMC oxidoreductase ATC04_02770 PF05199 GMC oxidoreductase ATC04_02775 PF00324 Amino acid permease ATC04_02795 PF00403 Heavy-metal-associated domain ATC04_02805 PF02583 Metal-sensitive transcriptional repressor ATC04_02835 PF07690 Major Facilitator Superfamily ATC04_02860 PF01494 FAD binding domain ATC04_02860 PF07976 Phenol hydroxylase, C-terminal dimerisation domain ATC04_02875 PF05544 Proline racemase ATC04_02880 PF04012 PspA/IM30 family ATC04_02900 PF00672 HAMP domain ATC04_02900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_02900 PF07730 Histidine kinase ATC04_02900 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ATC04_02925 PF03061 Thioesterase superfamily ATC04_02930 PF04960 Glutaminase ATC04_02970 PF00795 Carbon-nitrogen hydrolase ATC04_02975 PF04371 Porphyromonas-type peptidyl-arginine deiminase ATC04_02985 PF01266 FAD dependent oxidoreductase ATC04_03010 PF02797 Chalcone and stilbene synthases, C-terminal domain ATC04_03010 PF00195 Chalcone and stilbene synthases, N-terminal domain ATC04_03015 PF13649 Methyltransferase domain ATC04_03020 PF01494 FAD binding domain ATC04_03025 PF04055 Radical SAM superfamily ATC04_03040 PF02627 Carboxymuconolactone decarboxylase family ATC04_03045 PF00155 Aminotransferase class I and II ATC04_03055 PF00561 alpha/beta hydrolase fold ATC04_03060 PF01979 Amidohydrolase family ATC04_03065 PF00557 Metallopeptidase family M24 ATC04_03065 PF05195 Aminopeptidase P, N-terminal domain ATC04_03080 PF09335 SNARE associated Golgi protein ATC04_03085 PF00005 ABC transporter ATC04_03095 PF07730 Histidine kinase ATC04_03100 PF00196 Bacterial regulatory proteins, luxR family ATC04_03100 PF00072 Response regulator receiver domain ATC04_03115 PF13193 AMP-binding enzyme C-terminal domain ATC04_03115 PF00501 AMP-binding enzyme ATC04_03130 PF02634 FdhD/NarQ family ATC04_03135 PF00384 Molybdopterin oxidoreductase ATC04_03135 PF01568 Molydopterin dinucleotide binding domain ATC04_03140 PF00860 Permease family ATC04_03145 PF00111 2Fe-2S iron-sulfur cluster binding domain ATC04_03145 PF01799 [2Fe-2S] binding domain ATC04_03150 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ATC04_03150 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ATC04_03160 PF01565 FAD binding domain ATC04_03160 PF02913 FAD linked oxidases, C-terminal domain ATC04_03165 PF07729 FCD domain ATC04_03165 PF00392 Bacterial regulatory proteins, gntR family ATC04_03170 PF00248 Aldo/keto reductase family ATC04_03180 PF10414 Sirohaem synthase dimerisation region ATC04_03180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATC04_03180 PF14824 Sirohaem biosynthesis protein central ATC04_03185 PF04324 BFD-like [2Fe-2S] binding domain ATC04_03185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ATC04_03185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ATC04_03185 PF18267 Rubredoxin NAD+ reductase C-terminal domain ATC04_03185 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_03185 PF13806 Rieske-like [2Fe-2S] domain ATC04_03195 PF14759 Reductase C-terminal ATC04_03195 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_03200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ATC04_03200 PF00384 Molybdopterin oxidoreductase ATC04_03200 PF01568 Molydopterin dinucleotide binding domain ATC04_03205 PF07690 Major Facilitator Superfamily ATC04_03215 PF00206 Lyase ATC04_03215 PF08328 Adenylosuccinate lyase C-terminal ATC04_03235 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ATC04_03240 PF00155 Aminotransferase class I and II ATC04_03245 PF00676 Dehydrogenase E1 component ATC04_03250 PF02779 Transketolase, pyrimidine binding domain ATC04_03250 PF02780 Transketolase, C-terminal domain ATC04_03255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATC04_03255 PF00364 Biotin-requiring enzyme ATC04_03255 PF02817 e3 binding domain ATC04_03260 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ATC04_03260 PF00326 Prolyl oligopeptidase family ATC04_03260 PF07676 WD40-like Beta Propeller Repeat ATC04_03265 PF00324 Amino acid permease ATC04_03270 PF00206 Lyase ATC04_03270 PF10415 Fumarase C C-terminus ATC04_03280 PF00392 Bacterial regulatory proteins, gntR family ATC04_03280 PF07729 FCD domain ATC04_03295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_03295 PF00205 Thiamine pyrophosphate enzyme, central domain ATC04_03295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATC04_03300 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATC04_03300 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATC04_03305 PF00149 Calcineurin-like phosphoesterase ATC04_03320 PF02803 Thiolase, C-terminal domain ATC04_03320 PF00108 Thiolase, N-terminal domain ATC04_03325 PF01144 Coenzyme A transferase ATC04_03330 PF01144 Coenzyme A transferase ATC04_03340 PF01614 Bacterial transcriptional regulator ATC04_03340 PF09339 IclR helix-turn-helix domain ATC04_03345 PF14031 Putative serine dehydratase domain ATC04_03395 PF07690 Major Facilitator Superfamily ATC04_03410 PF13193 AMP-binding enzyme C-terminal domain ATC04_03410 PF00501 AMP-binding enzyme ATC04_03425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_03425 PF00005 ABC transporter ATC04_03435 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_03440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATC04_03450 PF01638 HxlR-like helix-turn-helix ATC04_03455 PF12706 Beta-lactamase superfamily domain ATC04_03460 PF00083 Sugar (and other) transporter ATC04_03460 PF07690 Major Facilitator Superfamily ATC04_03465 PF03466 LysR substrate binding domain ATC04_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_03470 PF02656 Domain of unknown function (DUF202) ATC04_03475 PF02656 Domain of unknown function (DUF202) ATC04_03480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_03480 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_03480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_03495 PF03601 Conserved hypothetical protein 698 ATC04_03500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_03500 PF03466 LysR substrate binding domain ATC04_03505 PF00083 Sugar (and other) transporter ATC04_03510 PF03466 LysR substrate binding domain ATC04_03510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_03515 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATC04_03515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATC04_03525 PF07690 Major Facilitator Superfamily ATC04_03525 PF00083 Sugar (and other) transporter ATC04_03530 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ATC04_03530 PF08501 Shikimate dehydrogenase substrate binding domain ATC04_03535 PF01261 Xylose isomerase-like TIM barrel ATC04_03540 PF09339 IclR helix-turn-helix domain ATC04_03540 PF01614 Bacterial transcriptional regulator ATC04_03545 PF03061 Thioesterase superfamily ATC04_03555 PF00155 Aminotransferase class I and II ATC04_03565 PF03949 Malic enzyme, NAD binding domain ATC04_03565 PF00390 Malic enzyme, N-terminal domain ATC04_03580 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATC04_03585 PF00324 Amino acid permease ATC04_03590 PF03328 HpcH/HpaI aldolase/citrate lyase family ATC04_03595 PF01235 Sodium:alanine symporter family ATC04_03600 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATC04_03605 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_03610 PF00005 ABC transporter ATC04_03610 PF00571 CBS domain ATC04_03615 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_03625 PF04264 YceI-like domain ATC04_03640 PF02589 LUD domain ATC04_03645 PF11870 Domain of unknown function (DUF3390) ATC04_03645 PF02589 LUD domain ATC04_03645 PF13183 4Fe-4S dicluster domain ATC04_03650 PF02754 Cysteine-rich domain ATC04_03655 PF02652 L-lactate permease ATC04_03660 PF00392 Bacterial regulatory proteins, gntR family ATC04_03660 PF07702 UTRA domain ATC04_03670 PF00067 Cytochrome P450 ATC04_03680 PF00271 Helicase conserved C-terminal domain ATC04_03680 PF00176 SNF2 family N-terminal domain ATC04_03680 PF04434 SWIM zinc finger ATC04_03695 PF00355 Rieske [2Fe-2S] domain ATC04_03700 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_03700 PF14759 Reductase C-terminal ATC04_03715 PF01037 Lrp/AsnC ligand binding domain ATC04_03725 PF02386 Cation transport protein ATC04_03730 PF02080 TrkA-C domain ATC04_03730 PF02254 TrkA-N domain ATC04_03755 PF01593 Flavin containing amine oxidoreductase ATC04_03770 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATC04_03790 PF07739 TipAS antibiotic-recognition domain ATC04_03790 PF13411 MerR HTH family regulatory protein ATC04_03815 PF01297 Zinc-uptake complex component A periplasmic ATC04_03820 PF00005 ABC transporter ATC04_03825 PF00950 ABC 3 transport family ATC04_03830 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_03835 PF00005 ABC transporter ATC04_03850 PF07702 UTRA domain ATC04_03850 PF00392 Bacterial regulatory proteins, gntR family ATC04_03855 PF13419 Haloacid dehalogenase-like hydrolase ATC04_03860 PF01325 Iron dependent repressor, N-terminal DNA binding domain ATC04_03860 PF02742 Iron dependent repressor, metal binding and dimerisation domain ATC04_03860 PF18357 Diphteria toxin repressor SH3 domain ATC04_03865 PF00294 pfkB family carbohydrate kinase ATC04_03885 PF02261 Aspartate decarboxylase ATC04_03890 PF00221 Aromatic amino acid lyase ATC04_03905 PF00210 Ferritin-like domain ATC04_03920 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATC04_03925 PF13378 Enolase C-terminal domain-like ATC04_03925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATC04_03935 PF00248 Aldo/keto reductase family ATC04_03945 PF00005 ABC transporter ATC04_03950 PF02653 Branched-chain amino acid transport system / permease component ATC04_03955 PF13407 Periplasmic binding protein domain ATC04_03960 PF00392 Bacterial regulatory proteins, gntR family ATC04_03960 PF07729 FCD domain ATC04_03965 PF00294 pfkB family carbohydrate kinase ATC04_03970 PF13532 2OG-Fe(II) oxygenase superfamily ATC04_03980 PF07690 Major Facilitator Superfamily ATC04_04005 PF00107 Zinc-binding dehydrogenase ATC04_04005 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_04015 PF05922 Peptidase inhibitor I9 ATC04_04015 PF00082 Subtilase family ATC04_04020 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase ATC04_04020 PF00754 F5/8 type C domain ATC04_04020 PF13088 BNR repeat-like domain ATC04_04025 PF14759 Reductase C-terminal ATC04_04025 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_04030 PF03576 Peptidase family S58 ATC04_04040 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_04040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATC04_04050 PF13823 Alcohol dehydrogenase GroES-associated ATC04_04050 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_04050 PF00107 Zinc-binding dehydrogenase ATC04_04065 PF00480 ROK family ATC04_04075 PF07687 Peptidase dimerisation domain ATC04_04075 PF01546 Peptidase family M20/M25/M40 ATC04_04095 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ATC04_04095 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ATC04_04095 PF01276 Orn/Lys/Arg decarboxylase, major domain ATC04_04100 PF00144 Beta-lactamase ATC04_04110 PF08338 Domain of unknown function (DUF1731) ATC04_04110 PF01370 NAD dependent epimerase/dehydratase family ATC04_04115 PF00474 Sodium:solute symporter family ATC04_04120 PF03466 LysR substrate binding domain ATC04_04120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_04135 PF00011 Hsp20/alpha crystallin family ATC04_04140 PF13411 MerR HTH family regulatory protein ATC04_04160 PF00005 ABC transporter ATC04_04160 PF13732 Domain of unknown function (DUF4162) ATC04_04165 PF00072 Response regulator receiver domain ATC04_04165 PF00196 Bacterial regulatory proteins, luxR family ATC04_04170 PF07730 Histidine kinase ATC04_04170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_04180 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ATC04_04190 PF00664 ABC transporter transmembrane region ATC04_04190 PF00005 ABC transporter ATC04_04195 PF00005 ABC transporter ATC04_04195 PF00664 ABC transporter transmembrane region ATC04_04200 PF01645 Conserved region in glutamate synthase ATC04_04205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATC04_04205 PF00378 Enoyl-CoA hydratase/isomerase ATC04_04205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATC04_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_04210 PF03466 LysR substrate binding domain ATC04_04235 PF00296 Luciferase-like monooxygenase ATC04_04240 PF00313 'Cold-shock' DNA-binding domain ATC04_04245 PF07690 Major Facilitator Superfamily ATC04_04260 PF03458 UPF0126 domain ATC04_04270 PF00326 Prolyl oligopeptidase family ATC04_04270 PF07676 WD40-like Beta Propeller Repeat ATC04_04285 PF17674 HHH domain ATC04_04285 PF09371 Tex-like protein N-terminal domain ATC04_04285 PF16921 Tex protein YqgF-like domain ATC04_04285 PF00575 S1 RNA binding domain ATC04_04290 PF00210 Ferritin-like domain ATC04_04300 PF00072 Response regulator receiver domain ATC04_04300 PF00196 Bacterial regulatory proteins, luxR family ATC04_04325 PF00171 Aldehyde dehydrogenase family ATC04_04330 PF00248 Aldo/keto reductase family ATC04_04335 PF00561 alpha/beta hydrolase fold ATC04_04340 PF08482 ATP-dependent helicase C-terminal ATC04_04340 PF00271 Helicase conserved C-terminal domain ATC04_04340 PF04408 Helicase associated domain (HA2) ATC04_04340 PF00270 DEAD/DEAH box helicase ATC04_04345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_04345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_04345 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_04350 PF17754 MftR C-terminal domain ATC04_04350 PF00440 Bacterial regulatory proteins, tetR family ATC04_04365 PF07690 Major Facilitator Superfamily ATC04_04370 PF02567 Phenazine biosynthesis-like protein ATC04_04395 PF00005 ABC transporter ATC04_04410 PF16123 Hydroxyacylglutathione hydrolase C-terminus ATC04_04410 PF00753 Metallo-beta-lactamase superfamily ATC04_04415 PF01032 FecCD transport family ATC04_04420 PF01032 FecCD transport family ATC04_04425 PF00005 ABC transporter ATC04_04435 PF00664 ABC transporter transmembrane region ATC04_04435 PF00005 ABC transporter ATC04_04450 PF13409 Glutathione S-transferase, N-terminal domain ATC04_04460 PF00075 RNase H ATC04_04465 PF13520 Amino acid permease ATC04_04480 PF02347 Glycine cleavage system P-protein ATC04_04485 PF08669 Glycine cleavage T-protein C-terminal barrel domain ATC04_04485 PF01571 Aminomethyltransferase folate-binding domain ATC04_04490 PF01597 Glycine cleavage H-protein ATC04_04495 PF00464 Serine hydroxymethyltransferase ATC04_04500 PF03315 Serine dehydratase beta chain ATC04_04500 PF03313 Serine dehydratase alpha chain ATC04_04505 PF03448 MgtE intracellular N domain ATC04_04505 PF01769 Divalent cation transporter ATC04_04505 PF00571 CBS domain ATC04_04510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATC04_04540 PF00171 Aldehyde dehydrogenase family ATC04_04545 PF01266 FAD dependent oxidoreductase ATC04_04555 PF01179 Copper amine oxidase, enzyme domain ATC04_04555 PF02728 Copper amine oxidase, N3 domain ATC04_04560 PF13977 BetI-type transcriptional repressor, C-terminal ATC04_04560 PF00440 Bacterial regulatory proteins, tetR family ATC04_04575 PF00171 Aldehyde dehydrogenase family ATC04_04590 PF00497 Bacterial extracellular solute-binding proteins, family 3 ATC04_04590 PF01464 Transglycosylase SLT domain ATC04_04610 PF04107 Glutamate-cysteine ligase family 2(GCS2) ATC04_04625 PF08501 Shikimate dehydrogenase substrate binding domain ATC04_04635 PF00202 Aminotransferase class-III ATC04_04640 PF00171 Aldehyde dehydrogenase family ATC04_04665 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_04665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_04665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_04675 PF00665 Integrase core domain ATC04_04680 PF00202 Aminotransferase class-III ATC04_04685 PF01037 Lrp/AsnC ligand binding domain ATC04_04700 PF00005 ABC transporter ATC04_04700 PF08402 TOBE domain ATC04_04705 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_04710 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_04720 PF00830 Ribosomal L28 family ATC04_04725 PF00471 Ribosomal protein L33 ATC04_04730 PF00253 Ribosomal protein S14p/S29e ATC04_04745 PF00216 Bacterial DNA-binding protein ATC04_04750 PF00216 Bacterial DNA-binding protein ATC04_04765 PF04314 Copper chaperone PCu(A)C ATC04_04775 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) ATC04_04775 PF05425 Copper resistance protein D ATC04_04785 PF00578 AhpC/TSA family ATC04_04785 PF02683 Cytochrome C biogenesis protein transmembrane region ATC04_04785 PF17991 Thioredoxin like C-terminal domain ATC04_04790 PF07690 Major Facilitator Superfamily ATC04_04800 PF05872 Bacterial protein of unknown function (DUF853) ATC04_04805 PF00005 ABC transporter ATC04_04810 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_04815 PF00497 Bacterial extracellular solute-binding proteins, family 3 ATC04_04835 PF05681 Fumarate hydratase (Fumerase) ATC04_04835 PF05683 Fumarase C-terminus ATC04_04850 PF00692 dUTPase ATC04_04860 PF00361 Proton-conducting membrane transporter ATC04_04860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATC04_04860 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ATC04_04860 PF13244 Domain of unknown function (DUF4040) ATC04_04875 PF01899 Na+/H+ ion antiporter subunit ATC04_04885 PF03334 Na+/H+ antiporter subunit ATC04_04895 PF09819 ABC-type cobalt transport system, permease component ATC04_04900 PF00005 ABC transporter ATC04_04910 PF13396 Phospholipase_D-nuclease N-terminal ATC04_04910 PF13091 PLD-like domain ATC04_04915 PF00561 alpha/beta hydrolase fold ATC04_04920 PF04715 Anthranilate synthase component I, N terminal region ATC04_04920 PF00425 chorismate binding enzyme ATC04_04920 PF00117 Glutamine amidotransferase class-I ATC04_04925 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATC04_04930 PF01810 LysE type translocator ATC04_04935 PF01047 MarR family ATC04_04940 PF03176 MMPL family ATC04_04945 PF12300 ATP-dependent RNA helicase RhlB ATC04_04945 PF00271 Helicase conserved C-terminal domain ATC04_04945 PF00270 DEAD/DEAH box helicase ATC04_04960 PF00012 Hsp70 protein ATC04_04965 PF01025 GrpE ATC04_04970 PF00684 DnaJ central domain ATC04_04970 PF00226 DnaJ domain ATC04_04970 PF01556 DnaJ C terminal domain ATC04_04975 PF13411 MerR HTH family regulatory protein ATC04_04985 PF02390 Putative methyltransferase ATC04_04990 PF03733 Inner membrane component domain ATC04_04995 PF03741 Integral membrane protein TerC family ATC04_05005 PF00004 ATPase family associated with various cellular activities (AAA) ATC04_05005 PF17871 AAA lid domain ATC04_05005 PF02861 Clp amino terminal domain, pathogenicity island component ATC04_05005 PF10431 C-terminal, D2-small domain, of ClpB protein ATC04_05005 PF07724 AAA domain (Cdc48 subfamily) ATC04_05020 PF00196 Bacterial regulatory proteins, luxR family ATC04_05020 PF00072 Response regulator receiver domain ATC04_05025 PF02371 Transposase IS116/IS110/IS902 family ATC04_05025 PF01548 Transposase ATC04_05030 PF02371 Transposase IS116/IS110/IS902 family ATC04_05030 PF01548 Transposase ATC04_05040 PF00586 AIR synthase related protein, N-terminal domain ATC04_05040 PF02769 AIR synthase related protein, C-terminal domain ATC04_05045 PF00156 Phosphoribosyl transferase domain ATC04_05065 PF02843 Phosphoribosylglycinamide synthetase, C domain ATC04_05065 PF02844 Phosphoribosylglycinamide synthetase, N domain ATC04_05065 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATC04_05070 PF01259 SAICAR synthetase ATC04_05075 PF00664 ABC transporter transmembrane region ATC04_05075 PF00005 ABC transporter ATC04_05080 PF00005 ABC transporter ATC04_05080 PF00664 ABC transporter transmembrane region ATC04_05090 PF00905 Penicillin binding protein transpeptidase domain ATC04_05090 PF00912 Transglycosylase ATC04_05095 PF01042 Endoribonuclease L-PSP ATC04_05105 PF13545 Crp-like helix-turn-helix domain ATC04_05105 PF00027 Cyclic nucleotide-binding domain ATC04_05110 PF13180 PDZ domain ATC04_05115 PF01220 Dehydroquinase class II ATC04_05125 PF00501 AMP-binding enzyme ATC04_05125 PF13193 AMP-binding enzyme C-terminal domain ATC04_05125 PF16177 Acetyl-coenzyme A synthetase N-terminus ATC04_05130 PF00633 Helix-hairpin-helix motif ATC04_05130 PF00730 HhH-GPD superfamily base excision DNA repair protein ATC04_05130 PF10576 Iron-sulfur binding domain of endonuclease III ATC04_05135 PF00293 NUDIX domain ATC04_05150 PF00437 Type II/IV secretion system protein ATC04_05180 PF00270 DEAD/DEAH box helicase ATC04_05180 PF00271 Helicase conserved C-terminal domain ATC04_05180 PF09369 Domain of unknown function (DUF1998) ATC04_05210 PF01751 Toprim domain ATC04_05210 PF01131 DNA topoisomerase ATC04_05210 PF13368 Topoisomerase C-terminal repeat ATC04_05215 PF02541 Ppx/GppA phosphatase family ATC04_05220 PF01261 Xylose isomerase-like TIM barrel ATC04_05225 PF03807 NADP oxidoreductase coenzyme F420-dependent ATC04_05225 PF14748 Pyrroline-5-carboxylate reductase dimerisation ATC04_05230 PF01494 FAD binding domain ATC04_05235 PF02254 TrkA-N domain ATC04_05235 PF02080 TrkA-C domain ATC04_05240 PF02386 Cation transport protein ATC04_05245 PF00850 Histone deacetylase domain ATC04_05250 PF01022 Bacterial regulatory protein, arsR family ATC04_05255 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ATC04_05255 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ATC04_05260 PF12728 Helix-turn-helix domain ATC04_05275 PF06971 Putative DNA-binding protein N-terminus ATC04_05275 PF02629 CoA binding domain ATC04_05285 PF00300 Histidine phosphatase superfamily (branch 1) ATC04_05290 PF00085 Thioredoxin ATC04_05295 PF02683 Cytochrome C biogenesis protein transmembrane region ATC04_05305 PF01578 Cytochrome C assembly protein ATC04_05320 PF01040 UbiA prenyltransferase family ATC04_05325 PF00501 AMP-binding enzyme ATC04_05325 PF13193 AMP-binding enzyme C-terminal domain ATC04_05330 PF00378 Enoyl-CoA hydratase/isomerase ATC04_05335 PF08946 Osmosensory transporter coiled coil ATC04_05335 PF00083 Sugar (and other) transporter ATC04_05340 PF00108 Thiolase, N-terminal domain ATC04_05340 PF02803 Thiolase, C-terminal domain ATC04_05345 PF00378 Enoyl-CoA hydratase/isomerase ATC04_05350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATC04_05350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATC04_05360 PF01184 GPR1/FUN34/yaaH family ATC04_05370 PF13350 Tyrosine phosphatase family ATC04_05390 PF03061 Thioesterase superfamily ATC04_05395 PF01575 MaoC like domain ATC04_05395 PF00171 Aldehyde dehydrogenase family ATC04_05415 PF03061 Thioesterase superfamily ATC04_05420 PF04229 GrpB protein ATC04_05425 PF00326 Prolyl oligopeptidase family ATC04_05425 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ATC04_05430 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_05435 PF00005 ABC transporter ATC04_05440 PF07681 DoxX ATC04_05445 PF05138 Phenylacetic acid catabolic protein ATC04_05450 PF06243 Phenylacetic acid degradation B ATC04_05455 PF05138 Phenylacetic acid catabolic protein ATC04_05460 PF01883 Iron-sulfur cluster assembly protein ATC04_05465 PF00970 Oxidoreductase FAD-binding domain ATC04_05465 PF00111 2Fe-2S iron-sulfur cluster binding domain ATC04_05465 PF00175 Oxidoreductase NAD-binding domain ATC04_05470 PF00378 Enoyl-CoA hydratase/isomerase ATC04_05475 PF01037 Lrp/AsnC ligand binding domain ATC04_05480 PF00676 Dehydrogenase E1 component ATC04_05485 PF02779 Transketolase, pyrimidine binding domain ATC04_05485 PF02780 Transketolase, C-terminal domain ATC04_05490 PF02817 e3 binding domain ATC04_05490 PF00364 Biotin-requiring enzyme ATC04_05490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATC04_05505 PF13378 Enolase C-terminal domain-like ATC04_05505 PF18374 Enolase N-terminal domain-like ATC04_05515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_05520 PF00005 ABC transporter ATC04_05525 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_05535 PF00425 chorismate binding enzyme ATC04_05540 PF00348 Polyprenyl synthetase ATC04_05555 PF13556 PucR C-terminal helix-turn-helix domain ATC04_05555 PF07905 Purine catabolism regulatory protein-like family ATC04_05560 PF00209 Sodium:neurotransmitter symporter family ATC04_05565 PF00202 Aminotransferase class-III ATC04_05570 PF00892 EamA-like transporter family ATC04_05575 PF01435 Peptidase family M48 ATC04_05580 PF04461 Protein of unknown function (DUF520) ATC04_05590 PF00085 Thioredoxin ATC04_05600 PF00291 Pyridoxal-phosphate dependent enzyme ATC04_05600 PF00571 CBS domain ATC04_05605 PF01053 Cys/Met metabolism PLP-dependent enzyme ATC04_05615 PF00271 Helicase conserved C-terminal domain ATC04_05615 PF00270 DEAD/DEAH box helicase ATC04_05615 PF03880 DbpA RNA binding domain ATC04_05710 PF03796 DnaB-like helicase C terminal domain ATC04_05710 PF00772 DnaB-like helicase N terminal domain ATC04_05740 PF16473 3' exoribonuclease, RNase T-like ATC04_05810 PF01551 Peptidase family M23 ATC04_05810 PF08525 Opacity-associated protein A N-terminal motif ATC04_05810 PF01476 LysM domain ATC04_05835 PF13229 Right handed beta helix region ATC04_05835 PF12708 Pectate lyase superfamily protein ATC04_05835 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ATC04_05875 PF04607 Region found in RelA / SpoT proteins ATC04_05900 PF13452 N-terminal half of MaoC dehydratase ATC04_05910 PF07690 Major Facilitator Superfamily ATC04_05915 PF01565 FAD binding domain ATC04_05915 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ATC04_05920 PF02774 Semialdehyde dehydrogenase, dimerisation domain ATC04_05920 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATC04_05930 PF00186 Dihydrofolate reductase ATC04_05935 PF00303 Thymidylate synthase ATC04_05945 PF00293 NUDIX domain ATC04_05945 PF00300 Histidine phosphatase superfamily (branch 1) ATC04_05950 PF17941 Polyphosphate kinase C-terminal domain 1 ATC04_05950 PF13090 Polyphosphate kinase C-terminal domain 2 ATC04_05950 PF02503 Polyphosphate kinase middle domain ATC04_05950 PF13089 Polyphosphate kinase N-terminal domain ATC04_05955 PF00583 Acetyltransferase (GNAT) family ATC04_05960 PF00486 Transcriptional regulatory protein, C terminal ATC04_05970 PF08768 Domain of unknown function (DUF1794) ATC04_05975 PF01571 Aminomethyltransferase folate-binding domain ATC04_05980 PF00365 Phosphofructokinase ATC04_06005 PF00196 Bacterial regulatory proteins, luxR family ATC04_06005 PF00072 Response regulator receiver domain ATC04_06010 PF00155 Aminotransferase class I and II ATC04_06020 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ATC04_06025 PF02357 Transcription termination factor nusG ATC04_06030 PF03946 Ribosomal protein L11, N-terminal domain ATC04_06030 PF00298 Ribosomal protein L11, RNA binding domain ATC04_06035 PF00687 Ribosomal protein L1p/L10e family ATC04_06040 PF00466 Ribosomal protein L10 ATC04_06045 PF16320 Ribosomal protein L7/L12 dimerisation domain ATC04_06045 PF00542 Ribosomal protein L7/L12 C-terminal domain ATC04_06050 PF01757 Acyltransferase family ATC04_06060 PF10385 RNA polymerase beta subunit external 1 domain ATC04_06060 PF04565 RNA polymerase Rpb2, domain 3 ATC04_06060 PF04561 RNA polymerase Rpb2, domain 2 ATC04_06060 PF04560 RNA polymerase Rpb2, domain 7 ATC04_06060 PF00562 RNA polymerase Rpb2, domain 6 ATC04_06060 PF04563 RNA polymerase beta subunit ATC04_06065 PF04983 RNA polymerase Rpb1, domain 3 ATC04_06065 PF00623 RNA polymerase Rpb1, domain 2 ATC04_06065 PF04997 RNA polymerase Rpb1, domain 1 ATC04_06065 PF04998 RNA polymerase Rpb1, domain 5 ATC04_06065 PF05000 RNA polymerase Rpb1, domain 4 ATC04_06075 PF00164 Ribosomal protein S12/S23 ATC04_06080 PF00177 Ribosomal protein S7p/S5e ATC04_06085 PF03764 Elongation factor G, domain IV ATC04_06085 PF14492 Elongation Factor G, domain II ATC04_06085 PF00679 Elongation factor G C-terminus ATC04_06085 PF00009 Elongation factor Tu GTP binding domain ATC04_06085 PF03144 Elongation factor Tu domain 2 ATC04_06090 PF03143 Elongation factor Tu C-terminal domain ATC04_06090 PF00009 Elongation factor Tu GTP binding domain ATC04_06090 PF03144 Elongation factor Tu domain 2 ATC04_06100 PF00338 Ribosomal protein S10p/S20e ATC04_06105 PF00297 Ribosomal protein L3 ATC04_06110 PF00573 Ribosomal protein L4/L1 family ATC04_06115 PF00276 Ribosomal protein L23 ATC04_06120 PF03947 Ribosomal Proteins L2, C-terminal domain ATC04_06120 PF00181 Ribosomal Proteins L2, RNA binding domain ATC04_06125 PF00203 Ribosomal protein S19 ATC04_06130 PF00237 Ribosomal protein L22p/L17e ATC04_06135 PF00189 Ribosomal protein S3, C-terminal domain ATC04_06135 PF07650 KH domain ATC04_06140 PF00252 Ribosomal protein L16p/L10e ATC04_06145 PF00831 Ribosomal L29 protein ATC04_06150 PF00366 Ribosomal protein S17 ATC04_06175 PF00238 Ribosomal protein L14p/L23e ATC04_06180 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ATC04_06185 PF00673 ribosomal L5P family C-terminus ATC04_06185 PF00281 Ribosomal protein L5 ATC04_06190 PF00410 Ribosomal protein S8 ATC04_06195 PF00347 Ribosomal protein L6 ATC04_06200 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ATC04_06205 PF00333 Ribosomal protein S5, N-terminal domain ATC04_06205 PF03719 Ribosomal protein S5, C-terminal domain ATC04_06210 PF00327 Ribosomal protein L30p/L7e ATC04_06215 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ATC04_06220 PF00344 SecY translocase ATC04_06230 PF00557 Metallopeptidase family M24 ATC04_06235 PF01176 Translation initiation factor 1A / IF-1 ATC04_06240 PF00416 Ribosomal protein S13/S18 ATC04_06245 PF00411 Ribosomal protein S11 ATC04_06250 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ATC04_06250 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ATC04_06250 PF01000 RNA polymerase Rpb3/RpoA insert domain ATC04_06255 PF01196 Ribosomal protein L17 ATC04_06265 PF01416 tRNA pseudouridine synthase ATC04_06270 PF00572 Ribosomal protein L13 ATC04_06275 PF00380 Ribosomal protein S9/S16 ATC04_06280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATC04_06280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATC04_06280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATC04_06280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATC04_06285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATC04_06285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ATC04_06285 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ATC04_06310 PF03853 YjeF-related protein N-terminus ATC04_06310 PF01256 Carbohydrate kinase ATC04_06315 PF01648 4'-phosphopantetheinyl transferase superfamily ATC04_06320 PF01380 SIS domain ATC04_06325 PF00485 Phosphoribulokinase / Uridine kinase family ATC04_06330 PF01741 Large-conductance mechanosensitive channel, MscL ATC04_06335 PF00842 Alanine racemase, C-terminal domain ATC04_06335 PF01168 Alanine racemase, N-terminal domain ATC04_06340 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATC04_06345 PF00814 Glycoprotease family ATC04_06345 PF00583 Acetyltransferase (GNAT) family ATC04_06350 PF00583 Acetyltransferase (GNAT) family ATC04_06355 PF00814 Glycoprotease family ATC04_06360 PF04107 Glutamate-cysteine ligase family 2(GCS2) ATC04_06375 PF00324 Amino acid permease ATC04_06380 PF00166 Chaperonin 10 Kd subunit ATC04_06385 PF00118 TCP-1/cpn60 chaperonin family ATC04_06400 PF01757 Acyltransferase family ATC04_06405 PF00571 CBS domain ATC04_06405 PF00478 IMP dehydrogenase / GMP reductase domain ATC04_06410 PF13649 Methyltransferase domain ATC04_06410 PF08241 Methyltransferase domain ATC04_06430 PF00478 IMP dehydrogenase / GMP reductase domain ATC04_06445 PF02540 NAD synthase ATC04_06445 PF00958 GMP synthase C terminal domain ATC04_06445 PF00117 Glutamine amidotransferase class-I ATC04_06465 PF01812 5-formyltetrahydrofolate cyclo-ligase family ATC04_06470 PF13302 Acetyltransferase (GNAT) domain ATC04_06480 PF01037 Lrp/AsnC ligand binding domain ATC04_06505 PF03976 Polyphosphate kinase 2 (PPK2) ATC04_06515 PF02609 Exonuclease VII small subunit ATC04_06520 PF13742 OB-fold nucleic acid binding domain ATC04_06520 PF02601 Exonuclease VII, large subunit ATC04_06525 PF02401 LytB protein ATC04_06530 PF01926 50S ribosome-binding GTPase ATC04_06530 PF06071 Protein of unknown function (DUF933) ATC04_06545 PF01494 FAD binding domain ATC04_06580 PF00535 Glycosyl transferase family 2 ATC04_06595 PF00849 RNA pseudouridylate synthase ATC04_06595 PF01479 S4 domain ATC04_06600 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ ATC04_06605 PF08768 Domain of unknown function (DUF1794) ATC04_06640 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ATC04_06640 PF01243 Pyridoxamine 5'-phosphate oxidase ATC04_06660 PF01022 Bacterial regulatory protein, arsR family ATC04_06665 PF01758 Sodium Bile acid symporter family ATC04_06670 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATC04_06700 PF03595 Voltage-dependent anion channel ATC04_06715 PF12697 Alpha/beta hydrolase family ATC04_06745 PF05690 Thiazole biosynthesis protein ThiG ATC04_06750 PF00899 ThiF family ATC04_06750 PF00581 Rhodanese-like domain ATC04_06775 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase ATC04_06785 PF00037 4Fe-4S binding domain ATC04_06790 PF00155 Aminotransferase class I and II ATC04_06795 PF00285 Citrate synthase, C-terminal domain ATC04_06805 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ATC04_06805 PF14602 Hexapeptide repeat of succinyl-transferase ATC04_06810 PF01546 Peptidase family M20/M25/M40 ATC04_06810 PF07687 Peptidase dimerisation domain ATC04_06815 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_06820 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_06825 PF00497 Bacterial extracellular solute-binding proteins, family 3 ATC04_06830 PF00005 ABC transporter ATC04_06835 PF03641 Possible lysine decarboxylase ATC04_06845 PF01596 O-methyltransferase ATC04_06850 PF04542 Sigma-70 region 2 ATC04_06850 PF08281 Sigma-70, region 4 ATC04_06860 PF10609 NUBPL iron-transfer P-loop NTPase ATC04_06860 PF01883 Iron-sulfur cluster assembly protein ATC04_06870 PF00571 CBS domain ATC04_06870 PF01769 Divalent cation transporter ATC04_06870 PF03448 MgtE intracellular N domain ATC04_06880 PF00557 Metallopeptidase family M24 ATC04_06880 PF05195 Aminopeptidase P, N-terminal domain ATC04_06890 PF01555 DNA methylase ATC04_06895 PF00271 Helicase conserved C-terminal domain ATC04_06895 PF00270 DEAD/DEAH box helicase ATC04_06900 PF08206 Ribonuclease B OB domain ATC04_06900 PF08461 Ribonuclease R winged-helix domain ATC04_06900 PF00773 RNB domain ATC04_06900 PF17876 Cold shock domain ATC04_06900 PF00575 S1 RNA binding domain ATC04_06910 PF08362 YcdC-like protein, C-terminal region ATC04_06910 PF00440 Bacterial regulatory proteins, tetR family ATC04_06915 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ATC04_06915 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ATC04_06915 PF01488 Shikimate / quinate 5-dehydrogenase ATC04_06920 PF01208 Uroporphyrinogen decarboxylase (URO-D) ATC04_06940 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ATC04_06940 PF03900 Porphobilinogen deaminase, C-terminal domain ATC04_06950 PF00490 Delta-aminolevulinic acid dehydratase ATC04_06955 PF00202 Aminotransferase class-III ATC04_06960 PF13520 Amino acid permease ATC04_06965 PF03180 NLPA lipoprotein ATC04_06970 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_06975 PF09383 NIL domain ATC04_06975 PF00005 ABC transporter ATC04_06990 PF00580 UvrD/REP helicase N-terminal domain ATC04_06990 PF13361 UvrD-like helicase C-terminal domain ATC04_06995 PF00580 UvrD/REP helicase N-terminal domain ATC04_06995 PF13361 UvrD-like helicase C-terminal domain ATC04_07005 PF09297 NADH pyrophosphatase zinc ribbon domain ATC04_07005 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ATC04_07005 PF00293 NUDIX domain ATC04_07010 PF13361 UvrD-like helicase C-terminal domain ATC04_07010 PF00570 HRDC domain ATC04_07010 PF00580 UvrD/REP helicase N-terminal domain ATC04_07025 PF05362 Lon protease (S16) C-terminal proteolytic domain ATC04_07025 PF13180 PDZ domain ATC04_07030 PF03699 Uncharacterised protein family (UPF0182) ATC04_07050 PF00872 Transposase, Mutator family ATC04_07060 PF04012 PspA/IM30 family ATC04_07070 PF17820 PDZ domain ATC04_07070 PF13180 PDZ domain ATC04_07075 PF01012 Electron transfer flavoprotein domain ATC04_07080 PF00766 Electron transfer flavoprotein FAD-binding domain ATC04_07080 PF01012 Electron transfer flavoprotein domain ATC04_07095 PF00588 SpoU rRNA Methylase family ATC04_07105 PF00781 Diacylglycerol kinase catalytic domain ATC04_07115 PF00809 Pterin binding enzyme ATC04_07125 PF00266 Aminotransferase class-V ATC04_07150 PF07732 Multicopper oxidase ATC04_07160 PF00296 Luciferase-like monooxygenase ATC04_07175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATC04_07175 PF12793 Sugar transport-related sRNA regulator N-term ATC04_07180 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_07185 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_07185 PF12911 N-terminal TM domain of oligopeptide transport permease C ATC04_07190 PF00005 ABC transporter ATC04_07190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_07205 PF00072 Response regulator receiver domain ATC04_07205 PF00486 Transcriptional regulatory protein, C terminal ATC04_07210 PF00672 HAMP domain ATC04_07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_07210 PF00512 His Kinase A (phospho-acceptor) domain ATC04_07215 PF10647 Lipoprotein LpqB beta-propeller domain ATC04_07215 PF10646 Sporulation and spore germination ATC04_07220 PF00156 Phosphoribosyl transferase domain ATC04_07225 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ATC04_07225 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ATC04_07230 PF06224 Winged helix DNA-binding domain ATC04_07235 PF07516 SecA Wing and Scaffold domain ATC04_07235 PF01043 SecA preprotein cross-linking domain ATC04_07235 PF07517 SecA DEAD-like domain ATC04_07265 PF05088 Bacterial NAD-glutamate dehydrogenase ATC04_07270 PF07568 Histidine kinase ATC04_07270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_07270 PF12282 Signal transduction histidine kinase ATC04_07275 PF05257 CHAP domain ATC04_07275 PF01476 LysM domain ATC04_07285 PF00348 Polyprenyl synthetase ATC04_07300 PF02381 MraZ protein, putative antitoxin-like ATC04_07305 PF01795 MraW methylase family ATC04_07315 PF03717 Penicillin-binding Protein dimerisation domain ATC04_07315 PF00905 Penicillin binding protein transpeptidase domain ATC04_07320 PF01225 Mur ligase family, catalytic domain ATC04_07320 PF02875 Mur ligase family, glutamate ligase domain ATC04_07320 PF08245 Mur ligase middle domain ATC04_07325 PF08245 Mur ligase middle domain ATC04_07325 PF02875 Mur ligase family, glutamate ligase domain ATC04_07325 PF01225 Mur ligase family, catalytic domain ATC04_07330 PF00953 Glycosyl transferase family 4 ATC04_07335 PF08245 Mur ligase middle domain ATC04_07335 PF02875 Mur ligase family, glutamate ligase domain ATC04_07340 PF01098 Cell cycle protein ATC04_07345 PF03033 Glycosyltransferase family 28 N-terminal domain ATC04_07345 PF04101 Glycosyltransferase family 28 C-terminal domain ATC04_07350 PF02875 Mur ligase family, glutamate ligase domain ATC04_07350 PF01225 Mur ligase family, catalytic domain ATC04_07350 PF08245 Mur ligase middle domain ATC04_07355 PF03799 Cell division protein FtsQ ATC04_07355 PF08478 POTRA domain, FtsQ-type ATC04_07360 PF12327 FtsZ family, C-terminal domain ATC04_07360 PF00091 Tubulin/FtsZ family, GTPase domain ATC04_07370 PF04472 Cell division protein SepF ATC04_07380 PF05103 DivIVA protein ATC04_07385 PF01252 Signal peptidase (SPase) II ATC04_07390 PF00849 RNA pseudouridylate synthase ATC04_07395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATC04_07395 PF02811 PHP domain ATC04_07395 PF14579 Helix-hairpin-helix motif ATC04_07395 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATC04_07400 PF00815 Histidinol dehydrogenase ATC04_07405 PF03477 ATP cone domain ATC04_07410 PF00557 Metallopeptidase family M24 ATC04_07420 PF02548 Ketopantoate hydroxymethyltransferase ATC04_07425 PF00120 Glutamine synthetase, catalytic domain ATC04_07425 PF03951 Glutamine synthetase, beta-Grasp domain ATC04_07430 PF03710 Glutamate-ammonia ligase adenylyltransferase ATC04_07430 PF08335 GlnD PII-uridylyltransferase ATC04_07440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATC04_07450 PF00120 Glutamine synthetase, catalytic domain ATC04_07450 PF03951 Glutamine synthetase, beta-Grasp domain ATC04_07465 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ATC04_07465 PF04055 Radical SAM superfamily ATC04_07470 PF03099 Biotin/lipoate A/B protein ligase family ATC04_07475 PF03793 PASTA domain ATC04_07475 PF00069 Protein kinase domain ATC04_07485 PF02817 e3 binding domain ATC04_07485 PF00364 Biotin-requiring enzyme ATC04_07485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATC04_07490 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_07490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATC04_07495 PF02789 Cytosol aminopeptidase family, N-terminal domain ATC04_07495 PF00883 Cytosol aminopeptidase family, catalytic domain ATC04_07515 PF04539 Sigma-70 region 3 ATC04_07515 PF00140 Sigma-70 factor, region 1.2 ATC04_07515 PF04542 Sigma-70 region 2 ATC04_07515 PF04545 Sigma-70, region 4 ATC04_07520 PF00986 DNA gyrase B subunit, carboxyl terminus ATC04_07520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_07520 PF01751 Toprim domain ATC04_07520 PF00204 DNA gyrase B ATC04_07530 PF03965 Penicillinase repressor ATC04_07535 PF01654 Cytochrome bd terminal oxidase subunit I ATC04_07540 PF02322 Cytochrome bd terminal oxidase subunit II ATC04_07545 PF00664 ABC transporter transmembrane region ATC04_07545 PF00005 ABC transporter ATC04_07550 PF03989 DNA gyrase C-terminal domain, beta-propeller ATC04_07550 PF00521 DNA gyrase/topoisomerase IV, subunit A ATC04_07555 PF13302 Acetyltransferase (GNAT) domain ATC04_07555 PF00027 Cyclic nucleotide-binding domain ATC04_07570 PF11268 Protein of unknown function (DUF3071) ATC04_07585 PF00692 dUTPase ATC04_07605 PF02080 TrkA-C domain ATC04_07605 PF02254 TrkA-N domain ATC04_07610 PF02254 TrkA-N domain ATC04_07610 PF02080 TrkA-C domain ATC04_07615 PF13520 Amino acid permease ATC04_07620 PF05958 tRNA (Uracil-5-)-methyltransferase ATC04_07625 PF00330 Aconitase family (aconitate hydratase) ATC04_07625 PF00694 Aconitase C-terminal domain ATC04_07665 PF05199 GMC oxidoreductase ATC04_07670 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ATC04_07670 PF02779 Transketolase, pyrimidine binding domain ATC04_07670 PF02780 Transketolase, C-terminal domain ATC04_07675 PF04167 Protein of unknown function (DUF402) ATC04_07700 PF00764 Arginosuccinate synthase ATC04_07705 PF00248 Aldo/keto reductase family ATC04_07720 PF00378 Enoyl-CoA hydratase/isomerase ATC04_07720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATC04_07720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATC04_07725 PF00108 Thiolase, N-terminal domain ATC04_07725 PF02803 Thiolase, C-terminal domain ATC04_07740 PF01212 Beta-eliminating lyase ATC04_07745 PF00106 short chain dehydrogenase ATC04_07755 PF01641 SelR domain ATC04_07765 PF04073 Aminoacyl-tRNA editing domain ATC04_07770 PF02657 Fe-S metabolism associated domain ATC04_07775 PF00581 Rhodanese-like domain ATC04_07785 PF03594 Benzoate membrane transport protein ATC04_07835 PF01327 Polypeptide deformylase ATC04_07840 PF00551 Formyl transferase ATC04_07840 PF02911 Formyl transferase, C-terminal domain ATC04_07845 PF01189 16S rRNA methyltransferase RsmB/F ATC04_07845 PF01029 NusB family ATC04_07850 PF00834 Ribulose-phosphate 3 epimerase family ATC04_07860 PF01872 RibD C-terminal domain ATC04_07860 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATC04_07865 PF00677 Lumazine binding domain ATC04_07870 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ATC04_07870 PF00925 GTP cyclohydrolase II ATC04_07875 PF00885 6,7-dimethyl-8-ribityllumazine synthase ATC04_07880 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ATC04_07885 PF08029 HisG, C-terminal domain ATC04_07885 PF01634 ATP phosphoribosyltransferase ATC04_07890 PF00977 Histidine biosynthesis protein ATC04_07900 PF01502 Phosphoribosyl-AMP cyclohydrolase ATC04_07905 PF00425 chorismate binding enzyme ATC04_07905 PF04715 Anthranilate synthase component I, N terminal region ATC04_07920 PF00218 Indole-3-glycerol phosphate synthase ATC04_07925 PF00291 Pyridoxal-phosphate dependent enzyme ATC04_07930 PF00290 Tryptophan synthase alpha chain ATC04_07935 PF01790 Prolipoprotein diacylglyceryl transferase ATC04_07940 PF04898 Glutamate synthase central domain ATC04_07940 PF01493 GXGXG motif ATC04_07940 PF01645 Conserved region in glutamate synthase ATC04_07940 PF00310 Glutamine amidotransferases class-II ATC04_07945 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_07945 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ATC04_07950 PF02887 Pyruvate kinase, alpha/beta domain ATC04_07950 PF00224 Pyruvate kinase, barrel domain ATC04_07960 PF03861 ANTAR domain ATC04_07960 PF00072 Response regulator receiver domain ATC04_07965 PF01384 Phosphate transporter family ATC04_07975 PF01872 RibD C-terminal domain ATC04_07975 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATC04_07980 PF03061 Thioesterase superfamily ATC04_07985 PF00476 DNA polymerase family A ATC04_07985 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATC04_07985 PF01367 5'-3' exonuclease, C-terminal SAM fold ATC04_07990 PF13530 Sterol carrier protein domain ATC04_07990 PF17668 Acetyltransferase (GNAT) domain ATC04_08000 PF00575 S1 RNA binding domain ATC04_08020 PF05175 Methyltransferase small domain ATC04_08025 PF09186 Domain of unknown function (DUF1949) ATC04_08025 PF01205 Uncharacterized protein family UPF0029 ATC04_08035 PF01121 Dephospho-CoA kinase ATC04_08060 PF12344 Ultra-violet resistance protein B ATC04_08060 PF00271 Helicase conserved C-terminal domain ATC04_08060 PF04851 Type III restriction enzyme, res subunit ATC04_08060 PF02151 UvrB/uvrC motif ATC04_08060 PF17757 UvrB interaction domain ATC04_08065 PF03741 Integral membrane protein TerC family ATC04_08070 PF01047 MarR family ATC04_08075 PF00561 alpha/beta hydrolase fold ATC04_08120 PF08148 DSHCT (NUC185) domain ATC04_08120 PF00270 DEAD/DEAH box helicase ATC04_08120 PF00271 Helicase conserved C-terminal domain ATC04_08125 PF13649 Methyltransferase domain ATC04_08145 PF05114 Protein of unknown function (DUF692) ATC04_08165 PF17755 UvrA DNA-binding domain ATC04_08165 PF00005 ABC transporter ATC04_08165 PF17760 UvrA interaction domain ATC04_08170 PF13419 Haloacid dehalogenase-like hydrolase ATC04_08175 PF01553 Acyltransferase ATC04_08180 PF08459 UvrC Helix-hairpin-helix N-terminal ATC04_08180 PF01541 GIY-YIG catalytic domain ATC04_08180 PF02151 UvrB/uvrC motif ATC04_08180 PF12826 Helix-hairpin-helix motif ATC04_08185 PF03668 P-loop ATPase protein family ATC04_08190 PF01933 Uncharacterised protein family UPF0052 ATC04_08195 PF10298 WhiA N-terminal LAGLIDADG-like domain ATC04_08195 PF14527 WhiA LAGLIDADG-like domain ATC04_08195 PF02650 WhiA C-terminal HTH domain ATC04_08200 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATC04_08200 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATC04_08205 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATC04_08205 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATC04_08210 PF00162 Phosphoglycerate kinase ATC04_08215 PF00121 Triosephosphate isomerase ATC04_08220 PF03840 Preprotein translocase SecG subunit ATC04_08230 PF01266 FAD dependent oxidoreductase ATC04_08235 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ATC04_08245 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ATC04_08245 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ATC04_08250 PF00342 Phosphoglucose isomerase ATC04_08255 PF00923 Transaldolase/Fructose-6-phosphate aldolase ATC04_08260 PF02779 Transketolase, pyrimidine binding domain ATC04_08260 PF00456 Transketolase, thiamine diphosphate binding domain ATC04_08260 PF02780 Transketolase, C-terminal domain ATC04_08265 PF01040 UbiA prenyltransferase family ATC04_08300 PF01458 Uncharacterized protein family (UPF0051) ATC04_08305 PF01458 Uncharacterized protein family (UPF0051) ATC04_08310 PF00005 ABC transporter ATC04_08315 PF01883 Iron-sulfur cluster assembly protein ATC04_08320 PF01883 Iron-sulfur cluster assembly protein ATC04_08325 PF00108 Thiolase, N-terminal domain ATC04_08325 PF02803 Thiolase, C-terminal domain ATC04_08330 PF13193 AMP-binding enzyme C-terminal domain ATC04_08330 PF00501 AMP-binding enzyme ATC04_08335 PF02632 BioY family ATC04_08340 PF02361 Cobalt transport protein ATC04_08345 PF00005 ABC transporter ATC04_08350 PF01810 LysE type translocator ATC04_08355 PF13404 AsnC-type helix-turn-helix domain ATC04_08355 PF01037 Lrp/AsnC ligand binding domain ATC04_08360 PF07690 Major Facilitator Superfamily ATC04_08365 PF00890 FAD binding domain ATC04_08380 PF00436 Single-strand binding protein family ATC04_08385 PF12848 ABC transporter ATC04_08385 PF00005 ABC transporter ATC04_08395 PF00376 MerR family regulatory protein ATC04_08395 PF09278 MerR, DNA binding ATC04_08410 PF01152 Bacterial-like globin ATC04_08420 PF01433 Peptidase family M1 domain ATC04_08420 PF11838 ERAP1-like C-terminal domain ATC04_08425 PF02502 Ribose/Galactose Isomerase ATC04_08430 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ATC04_08430 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ATC04_08430 PF06827 Zinc finger found in FPG and IleRS ATC04_08450 PF05698 Bacterial trigger factor protein (TF) C-terminus ATC04_08450 PF05697 Bacterial trigger factor protein (TF) ATC04_08450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATC04_08455 PF00574 Clp protease ATC04_08460 PF00574 Clp protease ATC04_08465 PF07724 AAA domain (Cdc48 subfamily) ATC04_08465 PF06689 ClpX C4-type zinc finger ATC04_08465 PF10431 C-terminal, D2-small domain, of ClpB protein ATC04_08470 PF01323 DSBA-like thioredoxin domain ATC04_08480 PF00133 tRNA synthetases class I (I, L, M and V) ATC04_08480 PF08264 Anticodon-binding domain of tRNA ATC04_08495 PF00106 short chain dehydrogenase ATC04_08505 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ATC04_08505 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ATC04_08510 PF01507 Phosphoadenosine phosphosulfate reductase family ATC04_08515 PF01507 Phosphoadenosine phosphosulfate reductase family ATC04_08520 PF00009 Elongation factor Tu GTP binding domain ATC04_08530 PF00005 ABC transporter ATC04_08540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATC04_08545 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_08550 PF02811 PHP domain ATC04_08550 PF14579 Helix-hairpin-helix motif ATC04_08550 PF00929 Exonuclease ATC04_08550 PF14480 DNA polymerase III polC-type N-terminus I ATC04_08550 PF11490 DNA polymerase III polC-type N-terminus II ATC04_08550 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATC04_08550 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATC04_08565 PF03176 MMPL family ATC04_08570 PF00072 Response regulator receiver domain ATC04_08570 PF00196 Bacterial regulatory proteins, luxR family ATC04_08575 PF07730 Histidine kinase ATC04_08575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_08590 PF08264 Anticodon-binding domain of tRNA ATC04_08590 PF00133 tRNA synthetases class I (I, L, M and V) ATC04_08595 PF08245 Mur ligase middle domain ATC04_08595 PF02875 Mur ligase family, glutamate ligase domain ATC04_08605 PF00334 Nucleoside diphosphate kinase ATC04_08625 PF01636 Phosphotransferase enzyme family ATC04_08640 PF10150 Ribonuclease E/G family ATC04_08645 PF00829 Ribosomal prokaryotic L21 protein ATC04_08650 PF01016 Ribosomal L27 protein ATC04_08655 PF01018 GTP1/OBG ATC04_08655 PF01926 50S ribosome-binding GTPase ATC04_08655 PF09269 Domain of unknown function (DUF1967) ATC04_08660 PF01472 PUA domain ATC04_08660 PF00696 Amino acid kinase family ATC04_08665 PF00171 Aldehyde dehydrogenase family ATC04_08675 PF01467 Cytidylyltransferase-like ATC04_08745 PF00324 Amino acid permease ATC04_08750 PF00155 Aminotransferase class I and II ATC04_08775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_08775 PF03466 LysR substrate binding domain ATC04_08780 PF02910 Fumarate reductase flavoprotein C-term ATC04_08780 PF00890 FAD binding domain ATC04_08785 PF02293 AmiS/UreI family transporter ATC04_08790 PF00005 ABC transporter ATC04_08790 PF12848 ABC transporter ATC04_08790 PF16326 ABC transporter C-terminal domain ATC04_08810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATC04_08810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATC04_08825 PF00291 Pyridoxal-phosphate dependent enzyme ATC04_08835 PF01168 Alanine racemase, N-terminal domain ATC04_08840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_08840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATC04_08840 PF00205 Thiamine pyrophosphate enzyme, central domain ATC04_08845 PF01168 Alanine racemase, N-terminal domain ATC04_08855 PF07972 NrdI Flavodoxin like ATC04_08860 PF08343 Ribonucleotide reductase N-terminal ATC04_08860 PF02867 Ribonucleotide reductase, barrel domain ATC04_08860 PF00317 Ribonucleotide reductase, all-alpha domain ATC04_08865 PF00268 Ribonucleotide reductase, small chain ATC04_08870 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ATC04_08870 PF00391 PEP-utilising enzyme, mobile domain ATC04_08880 PF00083 Sugar (and other) transporter ATC04_08880 PF07690 Major Facilitator Superfamily ATC04_08885 PF00313 'Cold-shock' DNA-binding domain ATC04_08915 PF00462 Glutaredoxin ATC04_08920 PF02586 SOS response associated peptidase (SRAP) ATC04_08930 PF00753 Metallo-beta-lactamase superfamily ATC04_08935 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_08935 PF00107 Zinc-binding dehydrogenase ATC04_08940 PF00248 Aldo/keto reductase family ATC04_08945 PF07690 Major Facilitator Superfamily ATC04_08945 PF00083 Sugar (and other) transporter ATC04_08950 PF00561 alpha/beta hydrolase fold ATC04_08950 PF00106 short chain dehydrogenase ATC04_08965 PF14579 Helix-hairpin-helix motif ATC04_08965 PF02811 PHP domain ATC04_08965 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATC04_08965 PF01336 OB-fold nucleic acid binding domain ATC04_08965 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATC04_08995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATC04_08995 PF03129 Anticodon binding domain ATC04_08995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATC04_09000 PF01230 HIT domain ATC04_09005 PF04055 Radical SAM superfamily ATC04_09005 PF06968 Biotin and Thiamin Synthesis associated domain ATC04_09010 PF00202 Aminotransferase class-III ATC04_09015 PF00155 Aminotransferase class I and II ATC04_09020 PF00067 Cytochrome P450 ATC04_09035 PF13732 Domain of unknown function (DUF4162) ATC04_09035 PF00005 ABC transporter ATC04_09045 PF13419 Haloacid dehalogenase-like hydrolase ATC04_09050 PF00455 DeoR C terminal sensor domain ATC04_09050 PF08220 DeoR-like helix-turn-helix domain ATC04_09055 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_09060 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_09065 PF13416 Bacterial extracellular solute-binding protein ATC04_09070 PF03009 Glycerophosphoryl diester phosphodiesterase family ATC04_09075 PF01680 SOR/SNZ family ATC04_09090 PF00583 Acetyltransferase (GNAT) family ATC04_09095 PF01432 Peptidase family M3 ATC04_09105 PF01174 SNO glutamine amidotransferase family ATC04_09110 PF01709 Transcriptional regulator ATC04_09115 PF02075 Crossover junction endodeoxyribonuclease RuvC ATC04_09120 PF07499 RuvA, C-terminal domain ATC04_09120 PF01330 RuvA N terminal domain ATC04_09125 PF05491 RuvB C-terminal winged helix domain ATC04_09125 PF05496 Holliday junction DNA helicase RuvB P-loop domain ATC04_09125 PF17864 RuvB AAA lid domain ATC04_09130 PF02699 Preprotein translocase subunit ATC04_09135 PF02355 Protein export membrane protein ATC04_09135 PF07549 SecD/SecF GG Motif ATC04_09140 PF02355 Protein export membrane protein ATC04_09140 PF07549 SecD/SecF GG Motif ATC04_09145 PF13291 ACT domain ATC04_09145 PF02824 TGS domain ATC04_09145 PF04607 Region found in RelA / SpoT proteins ATC04_09155 PF03993 Domain of Unknown Function (DUF349) ATC04_09160 PF13393 Histidyl-tRNA synthetase ATC04_09160 PF03129 Anticodon binding domain ATC04_09165 PF00152 tRNA synthetases class II (D, K and N) ATC04_09165 PF01336 OB-fold nucleic acid binding domain ATC04_09165 PF02938 GAD domain ATC04_09180 PF02580 D-Tyr-tRNA(Tyr) deacylase ATC04_09185 PF16193 AAA C-terminal domain ATC04_09185 PF00004 ATPase family associated with various cellular activities (AAA) ATC04_09185 PF12002 MgsA AAA+ ATPase C terminal ATC04_09190 PF00163 Ribosomal protein S4/S9 N-terminal domain ATC04_09190 PF01479 S4 domain ATC04_09205 PF02272 DHHA1 domain ATC04_09205 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATC04_09205 PF01411 tRNA synthetases class II (A) ATC04_09210 PF03652 Holliday junction resolvase ATC04_09220 PF01488 Shikimate / quinate 5-dehydrogenase ATC04_09220 PF08501 Shikimate dehydrogenase substrate binding domain ATC04_09220 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ATC04_09225 PF01264 Chorismate synthase ATC04_09230 PF01202 Shikimate kinase ATC04_09235 PF01761 3-dehydroquinate synthase ATC04_09245 PF09285 Elongation factor P, C-terminal ATC04_09245 PF08207 Elongation factor P (EF-P) KOW-like domain ATC04_09245 PF01132 Elongation factor P (EF-P) OB domain ATC04_09250 PF01029 NusB family ATC04_09255 PF00156 Phosphoribosyl transferase domain ATC04_09260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATC04_09260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATC04_09265 PF01979 Amidohydrolase family ATC04_09275 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ATC04_09275 PF00117 Glutamine amidotransferase class-I ATC04_09280 PF02142 MGS-like domain ATC04_09280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATC04_09280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATC04_09285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ATC04_09295 PF00625 Guanylate kinase ATC04_09300 PF01192 RNA polymerase Rpb6 ATC04_09305 PF02441 Flavoprotein ATC04_09305 PF04127 DNA / pantothenate metabolism flavoprotein ATC04_09310 PF02773 S-adenosylmethionine synthetase, C-terminal domain ATC04_09310 PF02772 S-adenosylmethionine synthetase, central domain ATC04_09310 PF00438 S-adenosylmethionine synthetase, N-terminal domain ATC04_09315 PF17764 3′ DNA-binding domain (3′BD) ATC04_09325 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ATC04_09325 PF00535 Glycosyl transferase family 2 ATC04_09335 PF04198 Putative sugar-binding domain ATC04_09340 PF01266 FAD dependent oxidoreductase ATC04_09340 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ATC04_09345 PF00230 Major intrinsic protein ATC04_09350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ATC04_09350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ATC04_09365 PF08264 Anticodon-binding domain of tRNA ATC04_09365 PF00133 tRNA synthetases class I (I, L, M and V) ATC04_09365 PF09334 tRNA synthetases class I (M) ATC04_09365 PF13603 Leucyl-tRNA synthetase, Domain 2 ATC04_09370 PF02645 Uncharacterised protein, DegV family COG1307 ATC04_09380 PF13567 Domain of unknown function (DUF4131) ATC04_09380 PF03772 Competence protein ATC04_09380 PF00753 Metallo-beta-lactamase superfamily ATC04_09390 PF01649 Ribosomal protein S20 ATC04_09400 PF00679 Elongation factor G C-terminus ATC04_09400 PF00009 Elongation factor Tu GTP binding domain ATC04_09400 PF06421 GTP-binding protein LepA C-terminus ATC04_09405 PF04055 Radical SAM superfamily ATC04_09420 PF01628 HrcA protein C terminal domain ATC04_09420 PF08220 DeoR-like helix-turn-helix domain ATC04_09425 PF00684 DnaJ central domain ATC04_09425 PF01556 DnaJ C terminal domain ATC04_09425 PF00226 DnaJ domain ATC04_09430 PF04452 RNA methyltransferase ATC04_09440 PF02562 PhoH-like protein ATC04_09445 PF02130 Uncharacterized protein family UPF0054 ATC04_09450 PF00571 CBS domain ATC04_09450 PF01595 Cyclin M transmembrane N-terminal domain ATC04_09450 PF03471 Transporter associated domain ATC04_09455 PF01926 50S ribosome-binding GTPase ATC04_09455 PF07650 KH domain ATC04_09460 PF01494 FAD binding domain ATC04_09465 PF08502 LeuA allosteric (dimerisation) domain ATC04_09465 PF00682 HMGL-like ATC04_09470 PF02565 Recombination protein O C terminal ATC04_09470 PF11967 Recombination protein O N terminal ATC04_09475 PF01255 Putative undecaprenyl diphosphate synthase ATC04_09480 PF12146 Serine aminopeptidase, S33 ATC04_09485 PF01180 Dihydroorotate dehydrogenase ATC04_09500 PF01521 Iron-sulphur cluster biosynthesis ATC04_09505 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ATC04_09510 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATC04_09515 PF12270 Cytochrome c oxidase subunit IV ATC04_09530 PF13631 Cytochrome b(N-terminal)/b6/petB ATC04_09535 PF00355 Rieske [2Fe-2S] domain ATC04_09540 PF00034 Cytochrome c ATC04_09540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATC04_09545 PF00510 Cytochrome c oxidase subunit III ATC04_09550 PF00591 Glycosyl transferase family, a/b domain ATC04_09550 PF02885 Glycosyl transferase family, helical bundle domain ATC04_09580 PF01872 RibD C-terminal domain ATC04_09600 PF01327 Polypeptide deformylase ATC04_09605 PF13649 Methyltransferase domain ATC04_09615 PF01145 SPFH domain / Band 7 family ATC04_09620 PF13397 RNA polymerase-binding protein ATC04_09625 PF00535 Glycosyl transferase family 2 ATC04_09635 PF00271 Helicase conserved C-terminal domain ATC04_09635 PF08148 DSHCT (NUC185) domain ATC04_09635 PF00270 DEAD/DEAH box helicase ATC04_09640 PF00902 Sec-independent protein translocase protein (TatC) ATC04_09645 PF02416 mttA/Hcf106 family ATC04_09660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATC04_09665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATC04_09665 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ATC04_09670 PF03136 Pup-ligase protein ATC04_09675 PF05639 Pup-like protein ATC04_09680 PF03136 Pup-ligase protein ATC04_09685 PF00004 ATPase family associated with various cellular activities (AAA) ATC04_09685 PF17758 Proteasomal ATPase OB N-terminal domain ATC04_09685 PF16450 Proteasomal ATPase OB C-terminal domain ATC04_09690 PF08704 tRNA methyltransferase complex GCD14 subunit ATC04_09695 PF00571 CBS domain ATC04_09695 PF02163 Peptidase family M50 ATC04_09700 PF13419 Haloacid dehalogenase-like hydrolase ATC04_09710 PF01406 tRNA synthetases class I (C) catalytic domain ATC04_09715 PF02673 Bacitracin resistance protein BacA ATC04_09735 PF01546 Peptidase family M20/M25/M40 ATC04_09735 PF07687 Peptidase dimerisation domain ATC04_09745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_09745 PF00512 His Kinase A (phospho-acceptor) domain ATC04_09745 PF00672 HAMP domain ATC04_09750 PF00072 Response regulator receiver domain ATC04_09750 PF00486 Transcriptional regulatory protein, C terminal ATC04_09755 PF01566 Natural resistance-associated macrophage protein ATC04_09765 PF04205 FMN-binding domain ATC04_09765 PF00890 FAD binding domain ATC04_09775 PF00561 alpha/beta hydrolase fold ATC04_09780 PF00534 Glycosyl transferases group 1 ATC04_09780 PF13439 Glycosyltransferase Family 4 ATC04_09795 PF02803 Thiolase, C-terminal domain ATC04_09795 PF00108 Thiolase, N-terminal domain ATC04_09850 PF11838 ERAP1-like C-terminal domain ATC04_09850 PF01433 Peptidase family M1 domain ATC04_09855 PF13784 Fic/DOC family N-terminal ATC04_09855 PF02661 Fic/DOC family ATC04_09860 PF03099 Biotin/lipoate A/B protein ligase family ATC04_09865 PF00107 Zinc-binding dehydrogenase ATC04_09865 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_09870 PF01197 Ribosomal protein L31 ATC04_09925 PF12161 HsdM N-terminal domain ATC04_09925 PF02384 N-6 DNA Methylase ATC04_09930 PF00588 SpoU rRNA Methylase family ATC04_09940 PF00005 ABC transporter ATC04_10000 PF12848 ABC transporter ATC04_10000 PF00005 ABC transporter ATC04_10050 PF00929 Exonuclease ATC04_10065 PF01381 Helix-turn-helix ATC04_10070 PF14765 Polyketide synthase dehydratase ATC04_10070 PF00550 Phosphopantetheine attachment site ATC04_10070 PF08659 KR domain ATC04_10070 PF00698 Acyl transferase domain ATC04_10070 PF02801 Beta-ketoacyl synthase, C-terminal domain ATC04_10070 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_10070 PF16197 Ketoacyl-synthetase C-terminal extension ATC04_10070 PF00109 Beta-ketoacyl synthase, N-terminal domain ATC04_10085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_10085 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_10085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_10090 PF01327 Polypeptide deformylase ATC04_10120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATC04_10120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATC04_10125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATC04_10125 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_10125 PF00403 Heavy-metal-associated domain ATC04_10130 PF03883 Peroxide stress protein YaaA ATC04_10145 PF01784 NIF3 (NGG1p interacting factor 3) ATC04_10150 PF01625 Peptide methionine sulfoxide reductase ATC04_10155 PF00291 Pyridoxal-phosphate dependent enzyme ATC04_10160 PF00132 Bacterial transferase hexapeptide (six repeats) ATC04_10170 PF00005 ABC transporter ATC04_10170 PF17760 UvrA interaction domain ATC04_10170 PF17755 UvrA DNA-binding domain ATC04_10190 PF01938 TRAM domain ATC04_10190 PF05958 tRNA (Uracil-5-)-methyltransferase ATC04_10195 PF16884 N-terminal domain of oxidoreductase ATC04_10195 PF00107 Zinc-binding dehydrogenase ATC04_10215 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ATC04_10215 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATC04_10220 PF07729 FCD domain ATC04_10220 PF00392 Bacterial regulatory proteins, gntR family ATC04_10225 PF02447 GntP family permease ATC04_10235 PF04226 Transglycosylase associated protein ATC04_10245 PF03006 Haemolysin-III related ATC04_10250 PF05532 CsbD-like ATC04_10260 PF01594 AI-2E family transporter ATC04_10270 PF00578 AhpC/TSA family ATC04_10275 PF11253 Protein of unknown function (DUF3052) ATC04_10280 PF17831 Pyruvate dehydrogenase E1 component middle domain ATC04_10280 PF00456 Transketolase, thiamine diphosphate binding domain ATC04_10285 PF13556 PucR C-terminal helix-turn-helix domain ATC04_10285 PF17853 GGDEF-like domain ATC04_10290 PF00698 Acyl transferase domain ATC04_10295 PF00550 Phosphopantetheine attachment site ATC04_10300 PF00109 Beta-ketoacyl synthase, N-terminal domain ATC04_10300 PF02801 Beta-ketoacyl synthase, C-terminal domain ATC04_10320 PF00589 Phage integrase family ATC04_10320 PF02899 Phage integrase, N-terminal SAM-like domain ATC04_10325 PF02481 DNA recombination-mediator protein A ATC04_10325 PF17782 DprA winged helix domain ATC04_10330 PF01078 Magnesium chelatase, subunit ChlI ATC04_10330 PF13335 Magnesium chelatase, subunit ChlI C-terminal ATC04_10335 PF02021 Uncharacterised protein family UPF0102 ATC04_10340 PF10611 Protein of unknown function (DUF2469) ATC04_10345 PF01351 Ribonuclease HII ATC04_10350 PF10502 Signal peptidase, peptidase S26 ATC04_10365 PF10502 Signal peptidase, peptidase S26 ATC04_10370 PF01245 Ribosomal protein L19 ATC04_10375 PF01746 tRNA (Guanine-1)-methyltransferase ATC04_10380 PF01782 RimM N-terminal domain ATC04_10390 PF00886 Ribosomal protein S16 ATC04_10395 PF01810 LysE type translocator ATC04_10415 PF03239 Iron permease FTR1 family ATC04_10420 PF09375 Imelysin ATC04_10420 PF13473 Cupredoxin-like domain ATC04_10425 PF04261 Dyp-type peroxidase family ATC04_10425 PF10518 TAT (twin-arginine translocation) pathway signal sequence ATC04_10430 PF02803 Thiolase, C-terminal domain ATC04_10430 PF00108 Thiolase, N-terminal domain ATC04_10435 PF13396 Phospholipase_D-nuclease N-terminal ATC04_10435 PF13091 PLD-like domain ATC04_10445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATC04_10450 PF13193 AMP-binding enzyme C-terminal domain ATC04_10450 PF00501 AMP-binding enzyme ATC04_10455 PF13193 AMP-binding enzyme C-terminal domain ATC04_10455 PF00501 AMP-binding enzyme ATC04_10470 PF02881 SRP54-type protein, helical bundle domain ATC04_10470 PF00448 SRP54-type protein, GTPase domain ATC04_10470 PF02978 Signal peptide binding domain ATC04_10475 PF10145 Phage-related minor tail protein ATC04_10475 PF01551 Peptidase family M23 ATC04_10475 PF01464 Transglycosylase SLT domain ATC04_10480 PF00909 Ammonium Transporter Family ATC04_10495 PF02245 Methylpurine-DNA glycosylase (MPG) ATC04_10505 PF01757 Acyltransferase family ATC04_10510 PF02881 SRP54-type protein, helical bundle domain ATC04_10510 PF00448 SRP54-type protein, GTPase domain ATC04_10515 PF07690 Major Facilitator Superfamily ATC04_10520 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ATC04_10520 PF00535 Glycosyl transferase family 2 ATC04_10525 PF06470 SMC proteins Flexible Hinge Domain ATC04_10525 PF02463 RecF/RecN/SMC N terminal domain ATC04_10535 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ATC04_10535 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ATC04_10535 PF06827 Zinc finger found in FPG and IleRS ATC04_10540 PF14622 Ribonuclease-III-like ATC04_10540 PF00035 Double-stranded RNA binding motif ATC04_10545 PF01783 Ribosomal L32p protein family ATC04_10565 PF01695 IstB-like ATP binding protein ATC04_10575 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ATC04_10580 PF01467 Cytidylyltransferase-like ATC04_10585 PF17101 Stealth protein CR1, conserved region 1 ATC04_10585 PF11380 Stealth protein CR2, conserved region 2 ATC04_10585 PF17103 Stealth protein CR4, conserved region 4 ATC04_10585 PF17102 Stealth protein CR3, conserved region 3 ATC04_10595 PF00535 Glycosyl transferase family 2 ATC04_10600 PF00005 ABC transporter ATC04_10600 PF14524 Wzt C-terminal domain ATC04_10605 PF01061 ABC-2 type transporter ATC04_10610 PF03816 Cell envelope-related transcriptional attenuator domain ATC04_10615 PF00483 Nucleotidyl transferase ATC04_10620 PF01467 Cytidylyltransferase-like ATC04_10625 PF00155 Aminotransferase class I and II ATC04_10640 PF17191 RecG wedge domain ATC04_10640 PF00270 DEAD/DEAH box helicase ATC04_10640 PF00271 Helicase conserved C-terminal domain ATC04_10645 PF02734 DAK2 domain ATC04_10645 PF13684 Dihydroxyacetone kinase family ATC04_10650 PF03816 Cell envelope-related transcriptional attenuator domain ATC04_10660 PF01820 D-ala D-ala ligase N-terminus ATC04_10660 PF07478 D-ala D-ala ligase C-terminus ATC04_10665 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATC04_10665 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ATC04_10675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATC04_10680 PF00694 Aconitase C-terminal domain ATC04_10685 PF00330 Aconitase family (aconitate hydratase) ATC04_10695 PF02769 AIR synthase related protein, C-terminal domain ATC04_10695 PF00586 AIR synthase related protein, N-terminal domain ATC04_10705 PF03193 RsgA GTPase ATC04_10725 PF13419 Haloacid dehalogenase-like hydrolase ATC04_10730 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATC04_10735 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATC04_10740 PF16363 GDP-mannose 4,6 dehydratase ATC04_10745 PF01063 Amino-transferase class IV ATC04_10750 PF00180 Isocitrate/isopropylmalate dehydrogenase ATC04_10755 PF07730 Histidine kinase ATC04_10760 PF00196 Bacterial regulatory proteins, luxR family ATC04_10760 PF00072 Response regulator receiver domain ATC04_10765 PF08264 Anticodon-binding domain of tRNA ATC04_10765 PF09334 tRNA synthetases class I (M) ATC04_10770 PF01936 NYN domain ATC04_10795 PF01527 Transposase ATC04_10800 PF00665 Integrase core domain ATC04_10800 PF13276 HTH-like domain ATC04_10800 PF13333 Integrase core domain ATC04_10810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATC04_10810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATC04_10810 PF01842 ACT domain ATC04_10815 PF00665 Integrase core domain ATC04_10825 PF00534 Glycosyl transferases group 1 ATC04_10825 PF13439 Glycosyltransferase Family 4 ATC04_10835 PF13614 AAA domain ATC04_10840 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATC04_10870 PF08453 Peptidase family M9 N-terminal ATC04_10870 PF01752 Collagenase ATC04_10870 PF18496 Collagenase G catalytic helper subdomain ATC04_10890 PF01467 Cytidylyltransferase-like ATC04_10895 PF00072 Response regulator receiver domain ATC04_10895 PF00196 Bacterial regulatory proteins, luxR family ATC04_10960 PF01943 Polysaccharide biosynthesis protein ATC04_10965 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATC04_10975 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATC04_10980 PF16363 GDP-mannose 4,6 dehydratase ATC04_10985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATC04_10985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATC04_10990 PF02397 Bacterial sugar transferase ATC04_10995 PF00196 Bacterial regulatory proteins, luxR family ATC04_11005 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ATC04_11010 PF16363 GDP-mannose 4,6 dehydratase ATC04_11015 PF00483 Nucleotidyl transferase ATC04_11030 PF08241 Methyltransferase domain ATC04_11035 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATC04_11035 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ATC04_11040 PF10369 Small subunit of acetolactate synthase ATC04_11045 PF00205 Thiamine pyrophosphate enzyme, central domain ATC04_11045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_11045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATC04_11050 PF00920 Dehydratase family ATC04_11060 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATC04_11060 PF13632 Glycosyl transferase family group 2 ATC04_11075 PF00990 Diguanylate cyclase, GGDEF domain ATC04_11075 PF03707 Bacterial signalling protein N terminal repeat ATC04_11075 PF00563 EAL domain ATC04_11085 PF00293 NUDIX domain ATC04_11105 PF01593 Flavin containing amine oxidoreductase ATC04_11130 PF11066 Protein of unknown function (DUF2867) ATC04_11130 PF13460 NAD(P)H-binding ATC04_11135 PF01047 MarR family ATC04_11145 PF00578 AhpC/TSA family ATC04_11175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATC04_11180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATC04_11185 PF06039 Malate:quinone oxidoreductase (Mqo) ATC04_11200 PF00873 AcrB/AcrD/AcrF family ATC04_11220 PF02599 Global regulator protein family ATC04_11230 PF00771 FHIPEP family ATC04_11235 PF01312 FlhB HrpN YscU SpaS Family ATC04_11240 PF01311 Bacterial export proteins, family 1 ATC04_11245 PF01313 Bacterial export proteins, family 3 ATC04_11250 PF00813 FliP family ATC04_11260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATC04_11270 PF00691 OmpA family ATC04_11270 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATC04_11275 PF01618 MotA/TolQ/ExbB proton channel family ATC04_11285 PF07559 Flagellar basal body protein FlaE ATC04_11285 PF00460 Flagella basal body rod protein ATC04_11285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATC04_11290 PF13861 FlgD Tudor-like domain ATC04_11290 PF13860 FlgD Ig-like domain ATC04_11290 PF03963 Flagellar hook capping protein - N-terminal region ATC04_11300 PF00877 NlpC/P60 family ATC04_11310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATC04_11310 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATC04_11310 PF18269 T3SS EscN ATPase C-terminal domain ATC04_11325 PF01514 Secretory protein of YscJ/FliF family ATC04_11325 PF08345 Flagellar M-ring protein C-terminal ATC04_11330 PF02049 Flagellar hook-basal body complex protein FliE ATC04_11335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATC04_11335 PF00460 Flagella basal body rod protein ATC04_11340 PF00460 Flagella basal body rod protein ATC04_11355 PF07196 Flagellin hook IN motif ATC04_11355 PF02465 Flagellar hook-associated protein 2 N-terminus ATC04_11355 PF07195 Flagellar hook-associated protein 2 C-terminus ATC04_11360 PF00669 Bacterial flagellin N-terminal helical region ATC04_11360 PF00700 Bacterial flagellin C-terminal helical region ATC04_11365 PF04539 Sigma-70 region 3 ATC04_11365 PF04542 Sigma-70 region 2 ATC04_11365 PF04545 Sigma-70, region 4 ATC04_11375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATC04_11375 PF00460 Flagella basal body rod protein ATC04_11380 PF00700 Bacterial flagellin C-terminal helical region ATC04_11380 PF00669 Bacterial flagellin N-terminal helical region ATC04_11385 PF02623 FliW protein ATC04_11395 PF01047 MarR family ATC04_11415 PF07690 Major Facilitator Superfamily ATC04_11420 PF00266 Aminotransferase class-V ATC04_11425 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ATC04_11425 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ATC04_11435 PF02445 Quinolinate synthetase A protein ATC04_11460 PF00920 Dehydratase family ATC04_11475 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATC04_11480 PF07729 FCD domain ATC04_11480 PF00392 Bacterial regulatory proteins, gntR family ATC04_11485 PF00171 Aldehyde dehydrogenase family ATC04_11490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATC04_11500 PF13291 ACT domain ATC04_11500 PF04607 Region found in RelA / SpoT proteins ATC04_11500 PF02824 TGS domain ATC04_11505 PF00156 Phosphoribosyl transferase domain ATC04_11505 PF05139 Erythromycin esterase ATC04_11510 PF00005 ABC transporter ATC04_11525 PF07690 Major Facilitator Superfamily ATC04_11540 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_11545 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_11545 PF14785 Maltose transport system permease protein MalF P2 domain ATC04_11555 PF00128 Alpha amylase, catalytic domain ATC04_11560 PF00356 Bacterial regulatory proteins, lacI family ATC04_11565 PF00083 Sugar (and other) transporter ATC04_11580 PF13476 AAA domain ATC04_11585 PF00149 Calcineurin-like phosphoesterase ATC04_11585 PF12320 Type 5 capsule protein repressor C-terminal domain ATC04_11600 PF02811 PHP domain ATC04_11600 PF14480 DNA polymerase III polC-type N-terminus I ATC04_11600 PF14579 Helix-hairpin-helix motif ATC04_11600 PF00929 Exonuclease ATC04_11600 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATC04_11600 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATC04_11600 PF11490 DNA polymerase III polC-type N-terminus II ATC04_11610 PF00005 ABC transporter ATC04_11635 PF01725 Ham1 family ATC04_11640 PF03725 3' exoribonuclease family, domain 2 ATC04_11640 PF01138 3' exoribonuclease family, domain 1 ATC04_11655 PF01227 GTP cyclohydrolase I ATC04_11660 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_11660 PF14759 Reductase C-terminal ATC04_11670 PF12706 Beta-lactamase superfamily domain ATC04_11675 PF01177 Asp/Glu/Hydantoin racemase ATC04_11685 PF02617 ATP-dependent Clp protease adaptor protein ClpS ATC04_11690 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ATC04_11690 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ATC04_11695 PF00857 Isochorismatase family ATC04_11710 PF16995 Transmembrane region of lysyl-tRNA synthetase ATC04_11710 PF00152 tRNA synthetases class II (D, K and N) ATC04_11710 PF09924 Uncharacterised conserved protein (DUF2156) ATC04_11710 PF01336 OB-fold nucleic acid binding domain ATC04_11715 PF04851 Type III restriction enzyme, res subunit ATC04_11735 PF13732 Domain of unknown function (DUF4162) ATC04_11735 PF00005 ABC transporter ATC04_11750 PF01594 AI-2E family transporter ATC04_11760 PF01939 Endonuclease NucS ATC04_11775 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATC04_11780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATC04_11780 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATC04_11785 PF00231 ATP synthase ATC04_11790 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATC04_11790 PF00306 ATP synthase alpha/beta chain, C terminal domain ATC04_11790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATC04_11795 PF00213 ATP synthase delta (OSCP) subunit ATC04_11800 PF00430 ATP synthase B/B' CF(0) ATC04_11805 PF00137 ATP synthase subunit C ATC04_11810 PF00119 ATP synthase A chain ATC04_11820 PF00953 Glycosyl transferase family 4 ATC04_11825 PF01300 Telomere recombination ATC04_11830 PF17827 PrmC N-terminal domain ATC04_11835 PF03462 PCRF domain ATC04_11835 PF00472 RF-1 domain ATC04_11840 PF07498 Rho termination factor, N-terminal domain ATC04_11840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATC04_11840 PF07497 Rho termination factor, RNA-binding domain ATC04_11845 PF00288 GHMP kinases N terminal domain ATC04_11850 PF00291 Pyridoxal-phosphate dependent enzyme ATC04_11855 PF03447 Homoserine dehydrogenase, NAD binding domain ATC04_11855 PF00742 Homoserine dehydrogenase ATC04_11855 PF01842 ACT domain ATC04_11860 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATC04_11860 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ATC04_11865 PF00750 tRNA synthetases class I (R) ATC04_11865 PF03485 Arginyl tRNA synthetase N terminal domain ATC04_11865 PF05746 DALR anticodon binding domain ATC04_11875 PF00005 ABC transporter ATC04_11890 PF00271 Helicase conserved C-terminal domain ATC04_11890 PF04408 Helicase associated domain (HA2) ATC04_11890 PF11898 Domain of unknown function (DUF3418) ATC04_11890 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ATC04_11890 PF00270 DEAD/DEAH box helicase ATC04_11895 PF01230 HIT domain ATC04_11900 PF00581 Rhodanese-like domain ATC04_11905 PF00288 GHMP kinases N terminal domain ATC04_11905 PF08544 GHMP kinases C terminal ATC04_11930 PF00005 ABC transporter ATC04_11935 PF03471 Transporter associated domain ATC04_11935 PF01595 Cyclin M transmembrane N-terminal domain ATC04_11935 PF00571 CBS domain ATC04_11940 PF01595 Cyclin M transmembrane N-terminal domain ATC04_11940 PF03471 Transporter associated domain ATC04_11940 PF00571 CBS domain ATC04_11945 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATC04_11945 PF02779 Transketolase, pyrimidine binding domain ATC04_11945 PF16870 2-oxoglutarate dehydrogenase C-terminal ATC04_11945 PF16078 2-oxoglutarate dehydrogenase N-terminus ATC04_11945 PF00676 Dehydrogenase E1 component ATC04_11960 PF08281 Sigma-70, region 4 ATC04_11960 PF04542 Sigma-70 region 2 ATC04_11965 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATC04_11970 PF03193 RsgA GTPase ATC04_11975 PF00459 Inositol monophosphatase family ATC04_11980 PF02742 Iron dependent repressor, metal binding and dimerisation domain ATC04_11980 PF00950 ABC 3 transport family ATC04_11985 PF00582 Universal stress protein family ATC04_11990 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ATC04_11995 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ATC04_12005 PF01668 SmpB protein ATC04_12010 PF01551 Peptidase family M23 ATC04_12010 PF01464 Transglycosylase SLT domain ATC04_12010 PF10145 Phage-related minor tail protein ATC04_12015 PF18075 FtsX extracellular domain ATC04_12015 PF02687 FtsX-like permease family ATC04_12020 PF00005 ABC transporter ATC04_12025 PF03462 PCRF domain ATC04_12025 PF00472 RF-1 domain ATC04_12125 PF02796 Helix-turn-helix domain of resolvase ATC04_12125 PF00239 Resolvase, N terminal domain ATC04_12145 PF14659 Phage integrase, N-terminal SAM-like domain ATC04_12145 PF00589 Phage integrase family ATC04_12160 PF12538 DNA transporter ATC04_12160 PF01580 FtsK/SpoIIIE family ATC04_12170 PF02467 Transcription factor WhiB ATC04_12175 PF00069 Protein kinase domain ATC04_12175 PF03793 PASTA domain ATC04_12180 PF01474 Class-II DAHP synthetase family ATC04_12200 PF00501 AMP-binding enzyme ATC04_12210 PF00682 HMGL-like ATC04_12210 PF02785 Biotin carboxylase C-terminal domain ATC04_12210 PF02436 Conserved carboxylase domain ATC04_12210 PF00364 Biotin-requiring enzyme ATC04_12210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATC04_12210 PF00289 Biotin carboxylase, N-terminal domain ATC04_12215 PF13614 AAA domain ATC04_12220 PF13411 MerR HTH family regulatory protein ATC04_12225 PF02577 Bifunctional nuclease ATC04_12230 PF00376 MerR family regulatory protein ATC04_12235 PF00498 FHA domain ATC04_12240 PF04343 Protein of unknown function, DUF488 ATC04_12245 PF07976 Phenol hydroxylase, C-terminal dimerisation domain ATC04_12245 PF01494 FAD binding domain ATC04_12250 PF00005 ABC transporter ATC04_12260 PF02567 Phenazine biosynthesis-like protein ATC04_12270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ATC04_12270 PF01926 50S ribosome-binding GTPase ATC04_12275 PF02224 Cytidylate kinase ATC04_12280 PF02153 Prephenate dehydrogenase ATC04_12285 PF01479 S4 domain ATC04_12285 PF00849 RNA pseudouridylate synthase ATC04_12290 PF04079 Segregation and condensation complex subunit ScpB ATC04_12295 PF02616 Segregation and condensation protein ScpA ATC04_12300 PF13614 AAA domain ATC04_12310 PF00375 Sodium:dicarboxylate symporter family ATC04_12315 PF17203 Single cache domain 3 ATC04_12315 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ATC04_12315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_12320 PF00072 Response regulator receiver domain ATC04_12320 PF04703 FaeA-like protein ATC04_12330 PF16177 Acetyl-coenzyme A synthetase N-terminus ATC04_12330 PF00501 AMP-binding enzyme ATC04_12330 PF13193 AMP-binding enzyme C-terminal domain ATC04_12335 PF07729 FCD domain ATC04_12335 PF00392 Bacterial regulatory proteins, gntR family ATC04_12340 PF03972 MmgE/PrpD family ATC04_12350 PF00285 Citrate synthase, C-terminal domain ATC04_12360 PF13443 Cro/C1-type HTH DNA-binding domain ATC04_12365 PF00293 NUDIX domain ATC04_12370 PF00589 Phage integrase family ATC04_12370 PF02899 Phage integrase, N-terminal SAM-like domain ATC04_12375 PF00293 NUDIX domain ATC04_12380 PF06418 CTP synthase N-terminus ATC04_12380 PF00117 Glutamine amidotransferase class-I ATC04_12385 PF02463 RecF/RecN/SMC N terminal domain ATC04_12390 PF01513 ATP-NAD kinase ATC04_12395 PF01728 FtsJ-like methyltransferase ATC04_12395 PF01479 S4 domain ATC04_12405 PF13344 Haloacid dehalogenase-like hydrolase ATC04_12405 PF18407 GCN5-related N-acetyltransferase like domain ATC04_12435 PF00579 tRNA synthetases class I (W and Y) ATC04_12445 PF00156 Phosphoribosyl transferase domain ATC04_12455 PF14698 Argininosuccinate lyase C-terminal ATC04_12455 PF00206 Lyase ATC04_12460 PF01661 Macro domain ATC04_12465 PF02863 Arginine repressor, C-terminal domain ATC04_12465 PF01316 Arginine repressor, DNA binding domain ATC04_12470 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATC04_12470 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATC04_12475 PF00202 Aminotransferase class-III ATC04_12480 PF00696 Amino acid kinase family ATC04_12485 PF01960 ArgJ family ATC04_12490 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATC04_12490 PF02774 Semialdehyde dehydrogenase, dimerisation domain ATC04_12495 PF00107 Zinc-binding dehydrogenase ATC04_12495 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_12525 PF00156 Phosphoribosyl transferase domain ATC04_12535 PF08003 Protein of unknown function (DUF1698) ATC04_12540 PF03484 tRNA synthetase B5 domain ATC04_12540 PF03147 Ferredoxin-fold anticodon binding domain ATC04_12540 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ATC04_12540 PF01588 Putative tRNA binding domain ATC04_12540 PF03483 B3/4 domain ATC04_12545 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ATC04_12545 PF01409 tRNA synthetases class II core domain (F) ATC04_12555 PF00293 NUDIX domain ATC04_12560 PF00588 SpoU rRNA Methylase family ATC04_12560 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATC04_12565 PF00453 Ribosomal protein L20 ATC04_12570 PF01632 Ribosomal protein L35 ATC04_12575 PF05198 Translation initiation factor IF-3, N-terminal domain ATC04_12575 PF00707 Translation initiation factor IF-3, C-terminal domain ATC04_12595 PF00977 Histidine biosynthesis protein ATC04_12600 PF00117 Glutamine amidotransferase class-I ATC04_12605 PF00475 Imidazoleglycerol-phosphate dehydratase ATC04_12610 PF00155 Aminotransferase class I and II ATC04_12620 PF01726 LexA DNA binding domain ATC04_12620 PF00717 Peptidase S24-like ATC04_12625 PF13307 Helicase C-terminal domain ATC04_12635 PF05175 Methyltransferase small domain ATC04_12635 PF08468 Methyltransferase small domain N-terminal ATC04_12640 PF01678 Diaminopimelate epimerase ATC04_12650 PF01938 TRAM domain ATC04_12650 PF00919 Uncharacterized protein family UPF0004 ATC04_12650 PF04055 Radical SAM superfamily ATC04_12655 PF02631 RecX family ATC04_12660 PF00154 recA bacterial DNA recombination protein ATC04_12675 PF18146 Damage-inducible protein CinA KH domain ATC04_12675 PF00994 Probable molybdopterin binding domain ATC04_12675 PF02464 Competence-damaged protein ATC04_12685 PF01580 FtsK/SpoIIIE family ATC04_12685 PF17854 FtsK alpha domain ATC04_12685 PF09397 Ftsk gamma domain ATC04_12700 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_12705 PF00571 CBS domain ATC04_12705 PF00005 ABC transporter ATC04_12710 PF05154 TM2 domain ATC04_12730 PF17770 Ribonuclease J C-terminal domain ATC04_12730 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ATC04_12730 PF12706 Beta-lactamase superfamily domain ATC04_12735 PF00701 Dihydrodipicolinate synthetase family ATC04_12750 PF01113 Dihydrodipicolinate reductase, N-terminus ATC04_12750 PF05173 Dihydrodipicolinate reductase, C-terminus ATC04_12760 PF12697 Alpha/beta hydrolase family ATC04_12765 PF00675 Insulinase (Peptidase family M16) ATC04_12765 PF05193 Peptidase M16 inactive domain ATC04_12785 PF00107 Zinc-binding dehydrogenase ATC04_12785 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_12805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATC04_12805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATC04_12810 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ATC04_12810 PF03435 Saccharopine dehydrogenase NADP binding domain ATC04_12810 PF08501 Shikimate dehydrogenase substrate binding domain ATC04_12815 PF07690 Major Facilitator Superfamily ATC04_12815 PF00083 Sugar (and other) transporter ATC04_12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_12820 PF03466 LysR substrate binding domain ATC04_12825 PF00890 FAD binding domain ATC04_12830 PF00149 Calcineurin-like phosphoesterase ATC04_12845 PF02664 S-Ribosylhomocysteinase (LuxS) ATC04_12870 PF10011 Predicted membrane protein (DUF2254) ATC04_12885 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ATC04_12885 PF00013 KH domain ATC04_12885 PF01138 3' exoribonuclease family, domain 1 ATC04_12885 PF00575 S1 RNA binding domain ATC04_12890 PF07729 FCD domain ATC04_12890 PF00392 Bacterial regulatory proteins, gntR family ATC04_12895 PF07690 Major Facilitator Superfamily ATC04_12900 PF07690 Major Facilitator Superfamily ATC04_12905 PF01614 Bacterial transcriptional regulator ATC04_12905 PF09339 IclR helix-turn-helix domain ATC04_12910 PF00175 Oxidoreductase NAD-binding domain ATC04_12910 PF00111 2Fe-2S iron-sulfur cluster binding domain ATC04_12910 PF00970 Oxidoreductase FAD-binding domain ATC04_12915 PF00067 Cytochrome P450 ATC04_12930 PF12706 Beta-lactamase superfamily domain ATC04_12935 PF00171 Aldehyde dehydrogenase family ATC04_12945 PF00072 Response regulator receiver domain ATC04_12945 PF08279 HTH domain ATC04_12950 PF00989 PAS fold ATC04_12950 PF17203 Single cache domain 3 ATC04_12950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_12950 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ATC04_12970 PF00582 Universal stress protein family ATC04_12980 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATC04_12980 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATC04_12985 PF00501 AMP-binding enzyme ATC04_12990 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ATC04_13005 PF17676 LD-carboxypeptidase C-terminal domain ATC04_13005 PF02016 LD-carboxypeptidase N-terminal domain ATC04_13010 PF00266 Aminotransferase class-V ATC04_13025 PF00312 Ribosomal protein S15 ATC04_13035 PF01687 Riboflavin kinase ATC04_13035 PF06574 FAD synthetase ATC04_13050 PF09142 tRNA Pseudouridine synthase II, C terminal ATC04_13050 PF16198 tRNA pseudouridylate synthase B C-terminal domain ATC04_13050 PF01509 TruB family pseudouridylate synthase (N terminal domain) ATC04_13065 PF01546 Peptidase family M20/M25/M40 ATC04_13065 PF07687 Peptidase dimerisation domain ATC04_13070 PF07690 Major Facilitator Superfamily ATC04_13075 PF00474 Sodium:solute symporter family ATC04_13080 PF02469 Fasciclin domain ATC04_13085 PF04542 Sigma-70 region 2 ATC04_13085 PF04545 Sigma-70, region 4 ATC04_13090 PF10099 Anti-sigma-K factor rskA ATC04_13095 PF00174 Oxidoreductase molybdopterin binding domain ATC04_13100 PF02033 Ribosome-binding factor A ATC04_13105 PF00009 Elongation factor Tu GTP binding domain ATC04_13105 PF04760 Translation initiation factor IF-2, N-terminal region ATC04_13105 PF11987 Translation-initiation factor 2 ATC04_13110 PF13184 NusA-like KH domain ATC04_13110 PF08529 NusA N-terminal domain ATC04_13115 PF17384 RimP C-terminal SH3 domain ATC04_13115 PF02576 RimP N-terminal domain ATC04_13130 PF03631 Virulence factor BrkB ATC04_13140 PF07730 Histidine kinase ATC04_13145 PF00196 Bacterial regulatory proteins, luxR family ATC04_13145 PF00072 Response regulator receiver domain ATC04_13150 PF01925 Sulfite exporter TauE/SafE ATC04_13155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATC04_13155 PF04073 Aminoacyl-tRNA editing domain ATC04_13155 PF03129 Anticodon binding domain ATC04_13185 PF04551 GcpE protein ATC04_13190 PF03358 NADPH-dependent FMN reductase ATC04_13195 PF03462 PCRF domain ATC04_13195 PF00472 RF-1 domain ATC04_13205 PF17820 PDZ domain ATC04_13205 PF02163 Peptidase family M50 ATC04_13210 PF13288 DXP reductoisomerase C-terminal domain ATC04_13210 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ATC04_13210 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ATC04_13215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_13215 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_13215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_13230 PF00005 ABC transporter ATC04_13230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_13235 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13235 PF12911 N-terminal TM domain of oligopeptide transport permease C ATC04_13240 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13250 PF00005 ABC transporter ATC04_13250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_13255 PF12911 N-terminal TM domain of oligopeptide transport permease C ATC04_13255 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13260 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATC04_13270 PF02817 e3 binding domain ATC04_13270 PF00364 Biotin-requiring enzyme ATC04_13270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATC04_13275 PF02780 Transketolase, C-terminal domain ATC04_13275 PF02779 Transketolase, pyrimidine binding domain ATC04_13280 PF00676 Dehydrogenase E1 component ATC04_13290 PF00535 Glycosyl transferase family 2 ATC04_13295 PF07478 D-ala D-ala ligase C-terminus ATC04_13295 PF01820 D-ala D-ala ligase N-terminus ATC04_13300 PF02585 GlcNAc-PI de-N-acetylase ATC04_13305 PF00474 Sodium:solute symporter family ATC04_13315 PF06580 Histidine kinase ATC04_13315 PF07694 5TMR of 5TMR-LYT ATC04_13320 PF00072 Response regulator receiver domain ATC04_13320 PF04397 LytTr DNA-binding domain ATC04_13330 PF00474 Sodium:solute symporter family ATC04_13345 PF01765 Ribosome recycling factor ATC04_13350 PF00696 Amino acid kinase family ATC04_13355 PF00889 Elongation factor TS ATC04_13360 PF00318 Ribosomal protein S2 ATC04_13375 PF13439 Glycosyltransferase Family 4 ATC04_13375 PF00534 Glycosyl transferases group 1 ATC04_13395 PF00534 Glycosyl transferases group 1 ATC04_13395 PF13579 Glycosyl transferase 4-like domain ATC04_13405 PF00282 Pyridoxal-dependent decarboxylase conserved domain ATC04_13410 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ATC04_13415 PF06276 Ferric iron reductase FhuF-like transporter ATC04_13415 PF04183 IucA / IucC family ATC04_13425 PF03551 Transcriptional regulator PadR-like family ATC04_13435 PF00005 ABC transporter ATC04_13435 PF13732 Domain of unknown function (DUF4162) ATC04_13460 PF01807 CHC2 zinc finger ATC04_13460 PF08275 DNA primase catalytic core, N-terminal domain ATC04_13460 PF13662 Toprim domain ATC04_13460 PF08278 DNA primase DnaG DnaB-binding ATC04_13460 PF10410 DnaB-helicase binding domain of primase ATC04_13465 PF13286 Phosphohydrolase-associated domain ATC04_13465 PF01966 HD domain ATC04_13470 PF01207 Dihydrouridine synthase (Dus) ATC04_13510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATC04_13510 PF03129 Anticodon binding domain ATC04_13530 PF13472 GDSL-like Lipase/Acylhydrolase family ATC04_13535 PF00561 alpha/beta hydrolase fold ATC04_13540 PF01053 Cys/Met metabolism PLP-dependent enzyme ATC04_13570 PF00455 DeoR C terminal sensor domain ATC04_13570 PF08220 DeoR-like helix-turn-helix domain ATC04_13575 PF03932 CutC family ATC04_13580 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13590 PF01547 Bacterial extracellular solute-binding protein ATC04_13595 PF01116 Fructose-bisphosphate aldolase class-II ATC04_13600 PF00294 pfkB family carbohydrate kinase ATC04_13615 PF08534 Redoxin ATC04_13620 PF01979 Amidohydrolase family ATC04_13625 PF01979 Amidohydrolase family ATC04_13630 PF01546 Peptidase family M20/M25/M40 ATC04_13640 PF01175 Urocanase Rossmann-like domain ATC04_13640 PF17392 Urocanase C-terminal domain ATC04_13640 PF17391 Urocanase N-terminal domain ATC04_13655 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13660 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13665 PF01547 Bacterial extracellular solute-binding protein ATC04_13675 PF00155 Aminotransferase class I and II ATC04_13680 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_13680 PF00107 Zinc-binding dehydrogenase ATC04_13690 PF07690 Major Facilitator Superfamily ATC04_13700 PF13419 Haloacid dehalogenase-like hydrolase ATC04_13705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATC04_13705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATC04_13710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_13710 PF00005 ABC transporter ATC04_13715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_13715 PF00005 ABC transporter ATC04_13720 PF12911 N-terminal TM domain of oligopeptide transport permease C ATC04_13720 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13725 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_13730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATC04_13735 PF00480 ROK family ATC04_13750 PF02637 GatB domain ATC04_13750 PF02934 GatB/GatE catalytic domain ATC04_13755 PF01425 Amidase ATC04_13760 PF02686 Glu-tRNAGln amidotransferase C subunit ATC04_13790 PF00933 Glycosyl hydrolase family 3 N terminal domain ATC04_13795 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ATC04_13815 PF00459 Inositol monophosphatase family ATC04_13820 PF12826 Helix-hairpin-helix motif ATC04_13820 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ATC04_13820 PF01653 NAD-dependent DNA ligase adenylation domain ATC04_13820 PF03120 NAD-dependent DNA ligase OB-fold domain ATC04_13820 PF00533 BRCA1 C Terminus (BRCT) domain ATC04_13830 PF16701 Adenylate cyclase regulatory domain ATC04_13830 PF00211 Adenylate and Guanylate cyclase catalytic domain ATC04_13845 PF00596 Class II Aldolase and Adducin N-terminal domain ATC04_13850 PF01039 Carboxyl transferase domain ATC04_13865 PF07690 Major Facilitator Superfamily ATC04_13875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATC04_13900 PF03176 MMPL family ATC04_13905 PF02545 Maf-like protein ATC04_13920 PF03738 Glutathionylspermidine synthase preATP-grasp ATC04_13930 PF00364 Biotin-requiring enzyme ATC04_13930 PF00289 Biotin carboxylase, N-terminal domain ATC04_13930 PF02785 Biotin carboxylase C-terminal domain ATC04_13930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATC04_13955 PF07690 Major Facilitator Superfamily ATC04_13955 PF00083 Sugar (and other) transporter ATC04_13960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATC04_13960 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_13965 PF01048 Phosphorylase superfamily ATC04_13970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATC04_13970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATC04_13970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATC04_13970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATC04_13975 PF01791 DeoC/LacD family aldolase ATC04_13985 PF00403 Heavy-metal-associated domain ATC04_13995 PF00271 Helicase conserved C-terminal domain ATC04_13995 PF00270 DEAD/DEAH box helicase ATC04_13995 PF02559 CarD-like/TRCF domain ATC04_13995 PF17757 UvrB interaction domain ATC04_13995 PF03461 TRCF domain ATC04_14005 PF06965 Na+/H+ antiporter 1 ATC04_14010 PF01592 NifU-like N terminal domain ATC04_14015 PF00266 Aminotransferase class-V ATC04_14020 PF00990 Diguanylate cyclase, GGDEF domain ATC04_14025 PF01195 Peptidyl-tRNA hydrolase ATC04_14030 PF14693 Ribosomal protein TL5, C-terminal domain ATC04_14030 PF01386 Ribosomal L25p family ATC04_14040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ATC04_14040 PF14572 Phosphoribosyl synthetase-associated domain ATC04_14045 PF00132 Bacterial transferase hexapeptide (six repeats) ATC04_14045 PF12804 MobA-like NTP transferase domain ATC04_14055 PF12848 ABC transporter ATC04_14055 PF16326 ABC transporter C-terminal domain ATC04_14055 PF00005 ABC transporter ATC04_14060 PF08713 DNA alkylation repair enzyme ATC04_14110 PF01266 FAD dependent oxidoreductase ATC04_14115 PF08544 GHMP kinases C terminal ATC04_14115 PF00288 GHMP kinases N terminal domain ATC04_14120 PF00398 Ribosomal RNA adenine dimethylase ATC04_14125 PF03990 G5-linked-Ubiquitin-like domain ATC04_14125 PF07501 G5 domain ATC04_14125 PF06737 Transglycosylase-like domain ATC04_14130 PF01026 TatD related DNase ATC04_14135 PF17863 AAA lid domain ATC04_14135 PF07726 ATPase family associated with various cellular activities (AAA) ATC04_14150 PF00171 Aldehyde dehydrogenase family ATC04_14155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATC04_14160 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ATC04_14160 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase ATC04_14165 PF00501 AMP-binding enzyme ATC04_14200 PF02467 Transcription factor WhiB ATC04_14210 PF04138 GtrA-like protein ATC04_14215 PF02222 ATP-grasp domain ATC04_14215 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATC04_14220 PF00731 AIR carboxylase ATC04_14225 PF03816 Cell envelope-related transcriptional attenuator domain ATC04_14230 PF01238 Phosphomannose isomerase type I ATC04_14235 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ATC04_14245 PF00484 Carbonic anhydrase ATC04_14250 PF10415 Fumarase C C-terminus ATC04_14250 PF00206 Lyase ATC04_14275 PF07690 Major Facilitator Superfamily ATC04_14280 PF00293 NUDIX domain ATC04_14295 PF13638 PIN domain ATC04_14295 PF02562 PhoH-like protein ATC04_14300 PF01255 Putative undecaprenyl diphosphate synthase ATC04_14305 PF03190 Protein of unknown function, DUF255 ATC04_14315 PF02585 GlcNAc-PI de-N-acetylase ATC04_14325 PF03449 Transcription elongation factor, N-terminal ATC04_14325 PF01272 Transcription elongation factor, GreA/GreB, C-term ATC04_14330 PF00291 Pyridoxal-phosphate dependent enzyme ATC04_14330 PF13291 ACT domain ATC04_14335 PF01594 AI-2E family transporter ATC04_14355 PF01527 Transposase ATC04_14360 PF00665 Integrase core domain ATC04_14360 PF13333 Integrase core domain ATC04_14360 PF13276 HTH-like domain ATC04_14365 PF02899 Phage integrase, N-terminal SAM-like domain ATC04_14365 PF00589 Phage integrase family ATC04_14385 PF02541 Ppx/GppA phosphatase family ATC04_14400 PF00113 Enolase, C-terminal TIM barrel domain ATC04_14400 PF03952 Enolase, N-terminal domain ATC04_14405 PF03819 MazG nucleotide pyrophosphohydrolase domain ATC04_14410 PF00171 Aldehyde dehydrogenase family ATC04_14415 PF00962 Adenosine/AMP deaminase ATC04_14425 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ATC04_14425 PF00591 Glycosyl transferase family, a/b domain ATC04_14425 PF02885 Glycosyl transferase family, helical bundle domain ATC04_14430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATC04_14450 PF02608 ABC transporter substrate-binding protein PnrA-like ATC04_14455 PF04107 Glutamate-cysteine ligase family 2(GCS2) ATC04_14455 PF01546 Peptidase family M20/M25/M40 ATC04_14460 PF02028 BCCT, betaine/carnitine/choline family transporter ATC04_14465 PF00483 Nucleotidyl transferase ATC04_14465 PF01050 Mannose-6-phosphate isomerase ATC04_14470 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATC04_14480 PF02910 Fumarate reductase flavoprotein C-term ATC04_14480 PF00890 FAD binding domain ATC04_14485 PF13085 2Fe-2S iron-sulfur cluster binding domain ATC04_14495 PF00579 tRNA synthetases class I (W and Y) ATC04_14500 PF03372 Endonuclease/Exonuclease/phosphatase family ATC04_14525 PF00072 Response regulator receiver domain ATC04_14525 PF00196 Bacterial regulatory proteins, luxR family ATC04_14535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_14535 PF03466 LysR substrate binding domain ATC04_14540 PF07690 Major Facilitator Superfamily ATC04_14540 PF00083 Sugar (and other) transporter ATC04_14570 PF03466 LysR substrate binding domain ATC04_14570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_14575 PF00067 Cytochrome P450 ATC04_14580 PF00111 2Fe-2S iron-sulfur cluster binding domain ATC04_14585 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_14585 PF14759 Reductase C-terminal ATC04_14590 PF07690 Major Facilitator Superfamily ATC04_14590 PF00083 Sugar (and other) transporter ATC04_14595 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ATC04_14595 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ATC04_14600 PF00743 Flavin-binding monooxygenase-like ATC04_14610 PF00551 Formyl transferase ATC04_14615 PF00132 Bacterial transferase hexapeptide (six repeats) ATC04_14620 PF06445 GyrI-like small molecule binding domain ATC04_14620 PF12833 Helix-turn-helix domain ATC04_14630 PF01053 Cys/Met metabolism PLP-dependent enzyme ATC04_14635 PF01053 Cys/Met metabolism PLP-dependent enzyme ATC04_14640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_14640 PF03466 LysR substrate binding domain ATC04_14650 PF08267 Cobalamin-independent synthase, N-terminal domain ATC04_14650 PF01717 Cobalamin-independent synthase, Catalytic domain ATC04_14655 PF00239 Resolvase, N terminal domain ATC04_14655 PF02796 Helix-turn-helix domain of resolvase ATC04_14670 PF02796 Helix-turn-helix domain of resolvase ATC04_14670 PF00239 Resolvase, N terminal domain ATC04_14675 PF03631 Virulence factor BrkB ATC04_14725 PF01022 Bacterial regulatory protein, arsR family ATC04_14740 PF03806 AbgT putative transporter family ATC04_14775 PF07732 Multicopper oxidase ATC04_14775 PF07731 Multicopper oxidase ATC04_14775 PF00394 Multicopper oxidase ATC04_14785 PF13411 MerR HTH family regulatory protein ATC04_14790 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATC04_14790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATC04_14795 PF00239 Resolvase, N terminal domain ATC04_14795 PF02796 Helix-turn-helix domain of resolvase ATC04_14800 PF02683 Cytochrome C biogenesis protein transmembrane region ATC04_14805 PF11798 IMS family HHH motif ATC04_14805 PF11799 impB/mucB/samB family C-terminal domain ATC04_14805 PF00817 impB/mucB/samB family ATC04_14805 PF13438 Domain of unknown function (DUF4113) ATC04_14810 PF00589 Phage integrase family ATC04_14810 PF02899 Phage integrase, N-terminal SAM-like domain ATC04_14820 PF07690 Major Facilitator Superfamily ATC04_14840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATC04_14845 PF00392 Bacterial regulatory proteins, gntR family ATC04_14845 PF07729 FCD domain ATC04_14850 PF01966 HD domain ATC04_14850 PF13286 Phosphohydrolase-associated domain ATC04_14860 PF03971 Monomeric isocitrate dehydrogenase ATC04_14870 PF07690 Major Facilitator Superfamily ATC04_14875 PF18011 C-terminal domain found in long catalases ATC04_14875 PF06628 Catalase-related immune-responsive ATC04_14875 PF00199 Catalase ATC04_14880 PF03746 LamB/YcsF family ATC04_14885 PF02626 Carboxyltransferase domain, subdomain A and B ATC04_14890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATC04_14890 PF00289 Biotin carboxylase, N-terminal domain ATC04_14890 PF00364 Biotin-requiring enzyme ATC04_14890 PF02785 Biotin carboxylase C-terminal domain ATC04_14905 PF07729 FCD domain ATC04_14905 PF00392 Bacterial regulatory proteins, gntR family ATC04_14920 PF07286 Protein of unknown function (DUF1445) ATC04_14925 PF01566 Natural resistance-associated macrophage protein ATC04_14930 PF02028 BCCT, betaine/carnitine/choline family transporter ATC04_14935 PF02142 MGS-like domain ATC04_14935 PF01808 AICARFT/IMPCHase bienzyme ATC04_14945 PF07690 Major Facilitator Superfamily ATC04_14960 PF00106 short chain dehydrogenase ATC04_14965 PF00551 Formyl transferase ATC04_14980 PF03328 HpcH/HpaI aldolase/citrate lyase family ATC04_14985 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATC04_14995 PF03301 Tryptophan 2,3-dioxygenase ATC04_15005 PF02515 CoA-transferase family III ATC04_15010 PF11574 Protein of unknown function (DUF3235) ATC04_15010 PF06737 Transglycosylase-like domain ATC04_15015 PF03631 Virulence factor BrkB ATC04_15060 PF12704 MacB-like periplasmic core domain ATC04_15060 PF02687 FtsX-like permease family ATC04_15065 PF12704 MacB-like periplasmic core domain ATC04_15065 PF02687 FtsX-like permease family ATC04_15065 PF00005 ABC transporter ATC04_15070 PF01545 Cation efflux family ATC04_15075 PF01022 Bacterial regulatory protein, arsR family ATC04_15080 PF13673 Acetyltransferase (GNAT) domain ATC04_15080 PF00958 GMP synthase C terminal domain ATC04_15080 PF00117 Glutamine amidotransferase class-I ATC04_15080 PF13302 Acetyltransferase (GNAT) domain ATC04_15080 PF03352 Methyladenine glycosylase ATC04_15085 PF04954 Siderophore-interacting protein ATC04_15085 PF08021 Siderophore-interacting FAD-binding domain ATC04_15105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATC04_15105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATC04_15110 PF00171 Aldehyde dehydrogenase family ATC04_15115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_15115 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_15115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_15120 PF13556 PucR C-terminal helix-turn-helix domain ATC04_15120 PF17853 GGDEF-like domain ATC04_15120 PF07905 Purine catabolism regulatory protein-like family ATC04_15125 PF02515 CoA-transferase family III ATC04_15135 PF07690 Major Facilitator Superfamily ATC04_15140 PF01047 MarR family ATC04_15145 PF00459 Inositol monophosphatase family ATC04_15155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATC04_15155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_15155 PF00205 Thiamine pyrophosphate enzyme, central domain ATC04_15160 PF00491 Arginase family ATC04_15165 PF00202 Aminotransferase class-III ATC04_15185 PF08671 Anti-repressor SinI ATC04_15185 PF01381 Helix-turn-helix ATC04_15210 PF12419 SNF2 Helicase protein ATC04_15210 PF00271 Helicase conserved C-terminal domain ATC04_15210 PF00176 SNF2 family N-terminal domain ATC04_15220 PF00549 CoA-ligase ATC04_15220 PF02629 CoA binding domain ATC04_15225 PF00549 CoA-ligase ATC04_15225 PF08442 ATP-grasp domain ATC04_15230 PF00580 UvrD/REP helicase N-terminal domain ATC04_15230 PF13361 UvrD-like helicase C-terminal domain ATC04_15250 PF00293 NUDIX domain ATC04_15250 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ATC04_15250 PF09297 NADH pyrophosphatase zinc ribbon domain ATC04_15260 PF00877 NlpC/P60 family ATC04_15265 PF01476 LysM domain ATC04_15265 PF08525 Opacity-associated protein A N-terminal motif ATC04_15265 PF01551 Peptidase family M23 ATC04_15270 PF18357 Diphteria toxin repressor SH3 domain ATC04_15270 PF02742 Iron dependent repressor, metal binding and dimerisation domain ATC04_15270 PF01325 Iron dependent repressor, N-terminal DNA binding domain ATC04_15275 PF00266 Aminotransferase class-V ATC04_15285 PF00313 'Cold-shock' DNA-binding domain ATC04_15295 PF00072 Response regulator receiver domain ATC04_15295 PF00486 Transcriptional regulatory protein, C terminal ATC04_15300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_15300 PF00672 HAMP domain ATC04_15300 PF00512 His Kinase A (phospho-acceptor) domain ATC04_15320 PF00118 TCP-1/cpn60 chaperonin family ATC04_15335 PF03167 Uracil DNA glycosylase superfamily ATC04_15365 PF02384 N-6 DNA Methylase ATC04_15370 PF05661 Protein of unknown function (DUF808) ATC04_15385 PF00982 Glycosyltransferase family 20 ATC04_15390 PF03636 Glycosyl hydrolase family 65, N-terminal domain ATC04_15390 PF03633 Glycosyl hydrolase family 65, C-terminal domain ATC04_15390 PF03632 Glycosyl hydrolase family 65 central catalytic domain ATC04_15390 PF02358 Trehalose-phosphatase ATC04_15395 PF17912 MalK OB fold domain ATC04_15395 PF00005 ABC transporter ATC04_15435 PF01565 FAD binding domain ATC04_15435 PF02913 FAD linked oxidases, C-terminal domain ATC04_15455 PF00588 SpoU rRNA Methylase family ATC04_15455 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATC04_15460 PF09190 DALR domain ATC04_15460 PF01406 tRNA synthetases class I (C) catalytic domain ATC04_15465 PF02542 YgbB family ATC04_15465 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATC04_15470 PF02559 CarD-like/TRCF domain ATC04_15480 PF00072 Response regulator receiver domain ATC04_15480 PF00486 Transcriptional regulatory protein, C terminal ATC04_15485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_15485 PF00512 His Kinase A (phospho-acceptor) domain ATC04_15490 PF01895 PhoU domain ATC04_15500 PF00300 Histidine phosphatase superfamily (branch 1) ATC04_15510 PF01053 Cys/Met metabolism PLP-dependent enzyme ATC04_15515 PF02223 Thymidylate kinase ATC04_15520 PF12169 DNA polymerase III subunits gamma and tau domain III ATC04_15520 PF12170 DNA polymerase III tau subunit V interacting with alpha ATC04_15520 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ATC04_15525 PF00561 alpha/beta hydrolase fold ATC04_15630 PF08460 Bacterial SH3 domain ATC04_15630 PF01551 Peptidase family M23 ATC04_15645 PF02899 Phage integrase, N-terminal SAM-like domain ATC04_15645 PF00589 Phage integrase family ATC04_15650 PF00248 Aldo/keto reductase family ATC04_15670 PF05593 RHS Repeat ATC04_15690 PF02554 Carbon starvation protein CstA ATC04_15690 PF13722 5TM C-terminal transporter carbon starvation CstA ATC04_15695 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_15695 PF00107 Zinc-binding dehydrogenase ATC04_15710 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ATC04_15710 PF00326 Prolyl oligopeptidase family ATC04_15725 PF00271 Helicase conserved C-terminal domain ATC04_15725 PF00570 HRDC domain ATC04_15725 PF16124 RecQ zinc-binding ATC04_15725 PF00270 DEAD/DEAH box helicase ATC04_15725 PF09382 RQC domain ATC04_15730 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATC04_15730 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATC04_15730 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATC04_15730 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATC04_15740 PF02082 Transcriptional regulator ATC04_15745 PF00042 Globin ATC04_15745 PF00970 Oxidoreductase FAD-binding domain ATC04_15745 PF00175 Oxidoreductase NAD-binding domain ATC04_15750 PF00561 alpha/beta hydrolase fold ATC04_15760 PF07690 Major Facilitator Superfamily ATC04_15765 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ATC04_15765 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ATC04_15785 PF00356 Bacterial regulatory proteins, lacI family ATC04_15795 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_15800 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_15825 PF08361 MAATS-type transcriptional repressor, C-terminal region ATC04_15825 PF00440 Bacterial regulatory proteins, tetR family ATC04_15830 PF00664 ABC transporter transmembrane region ATC04_15830 PF00005 ABC transporter ATC04_15830 PF03412 Peptidase C39 family ATC04_15845 PF00486 Transcriptional regulatory protein, C terminal ATC04_15845 PF00072 Response regulator receiver domain ATC04_15850 PF00486 Transcriptional regulatory protein, C terminal ATC04_15850 PF00072 Response regulator receiver domain ATC04_15855 PF00672 HAMP domain ATC04_15855 PF00512 His Kinase A (phospho-acceptor) domain ATC04_15855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_15865 PF14437 MafB19-like deaminase ATC04_15875 PF04226 Transglycosylase associated protein ATC04_15890 PF00293 NUDIX domain ATC04_15895 PF07690 Major Facilitator Superfamily ATC04_15900 PF00384 Molybdopterin oxidoreductase ATC04_15900 PF01568 Molydopterin dinucleotide binding domain ATC04_15905 PF13247 4Fe-4S dicluster domain ATC04_15905 PF14711 Respiratory nitrate reductase beta C-terminal ATC04_15910 PF02613 Nitrate reductase delta subunit ATC04_15910 PF02665 Nitrate reductase gamma subunit ATC04_15910 PF00384 Molybdopterin oxidoreductase ATC04_15915 PF02613 Nitrate reductase delta subunit ATC04_15915 PF00384 Molybdopterin oxidoreductase ATC04_15915 PF02665 Nitrate reductase gamma subunit ATC04_15930 PF12804 MobA-like NTP transferase domain ATC04_15935 PF00994 Probable molybdopterin binding domain ATC04_15935 PF03454 MoeA C-terminal region (domain IV) ATC04_15935 PF03453 MoeA N-terminal region (domain I and II) ATC04_15940 PF03459 TOBE domain ATC04_15940 PF00005 ABC transporter ATC04_15945 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_15955 PF06463 Molybdenum Cofactor Synthesis C ATC04_15955 PF04055 Radical SAM superfamily ATC04_15965 PF04978 Protein of unknown function (DUF664) ATC04_15970 PF13280 WYL domain ATC04_15975 PF02391 MoaE protein ATC04_15980 PF00581 Rhodanese-like domain ATC04_15980 PF00899 ThiF family ATC04_15990 PF03454 MoeA C-terminal region (domain IV) ATC04_15990 PF03453 MoeA N-terminal region (domain I and II) ATC04_15990 PF00994 Probable molybdopterin binding domain ATC04_15995 PF01967 MoaC family ATC04_16000 PF00994 Probable molybdopterin binding domain ATC04_16000 PF01967 MoaC family ATC04_16005 PF03009 Glycerophosphoryl diester phosphodiesterase family ATC04_16030 PF01614 Bacterial transcriptional regulator ATC04_16030 PF09339 IclR helix-turn-helix domain ATC04_16035 PF01144 Coenzyme A transferase ATC04_16040 PF01144 Coenzyme A transferase ATC04_16045 PF02803 Thiolase, C-terminal domain ATC04_16045 PF00108 Thiolase, N-terminal domain ATC04_16050 PF07690 Major Facilitator Superfamily ATC04_16060 PF01958 Domain of unknown function DUF108 ATC04_16060 PF03447 Homoserine dehydrogenase, NAD binding domain ATC04_16065 PF02028 BCCT, betaine/carnitine/choline family transporter ATC04_16070 PF01494 FAD binding domain ATC04_16075 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ATC04_16075 PF00775 Dioxygenase ATC04_16085 PF00206 Lyase ATC04_16085 PF10397 Adenylosuccinate lyase C-terminus ATC04_16095 PF02627 Carboxymuconolactone decarboxylase family ATC04_16120 PF00005 ABC transporter ATC04_16135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATC04_16135 PF01842 ACT domain ATC04_16135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATC04_16140 PF03616 Sodium/glutamate symporter ATC04_16145 PF00491 Arginase family ATC04_16150 PF01614 Bacterial transcriptional regulator ATC04_16150 PF09339 IclR helix-turn-helix domain ATC04_16155 PF01569 PAP2 superfamily ATC04_16160 PF02590 Predicted SPOUT methyltransferase ATC04_16165 PF00271 Helicase conserved C-terminal domain ATC04_16165 PF00270 DEAD/DEAH box helicase ATC04_16165 PF08494 DEAD/H associated ATC04_16170 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ATC04_16170 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ATC04_16175 PF00849 RNA pseudouridylate synthase ATC04_16185 PF00106 short chain dehydrogenase ATC04_16190 PF07690 Major Facilitator Superfamily ATC04_16205 PF01702 Queuine tRNA-ribosyltransferase ATC04_16215 PF00005 ABC transporter ATC04_16240 PF08543 Phosphomethylpyrimidine kinase ATC04_16250 PF00082 Subtilase family ATC04_16250 PF02225 PA domain ATC04_16250 PF00746 LPXTG cell wall anchor motif ATC04_16250 PF06280 Fn3-like domain ATC04_16255 PF00933 Glycosyl hydrolase family 3 N terminal domain ATC04_16260 PF13438 Domain of unknown function (DUF4113) ATC04_16260 PF00817 impB/mucB/samB family ATC04_16260 PF11799 impB/mucB/samB family C-terminal domain ATC04_16275 PF01266 FAD dependent oxidoreductase ATC04_16285 PF00881 Nitroreductase family ATC04_16290 PF07730 Histidine kinase ATC04_16300 PF00072 Response regulator receiver domain ATC04_16300 PF00196 Bacterial regulatory proteins, luxR family ATC04_16305 PF00004 ATPase family associated with various cellular activities (AAA) ATC04_16305 PF02861 Clp amino terminal domain, pathogenicity island component ATC04_16305 PF17871 AAA lid domain ATC04_16305 PF07724 AAA domain (Cdc48 subfamily) ATC04_16305 PF10431 C-terminal, D2-small domain, of ClpB protein ATC04_16330 PF07690 Major Facilitator Superfamily ATC04_16335 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase ATC04_16345 PF01381 Helix-turn-helix ATC04_16365 PF00463 Isocitrate lyase family ATC04_16380 PF00300 Histidine phosphatase superfamily (branch 1) ATC04_16385 PF00324 Amino acid permease ATC04_16415 PF00072 Response regulator receiver domain ATC04_16415 PF00486 Transcriptional regulatory protein, C terminal ATC04_16435 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATC04_16440 PF12169 DNA polymerase III subunits gamma and tau domain III ATC04_16450 PF07690 Major Facilitator Superfamily ATC04_16465 PF00696 Amino acid kinase family ATC04_16465 PF01842 ACT domain ATC04_16465 PF13840 ACT domain ATC04_16475 PF00072 Response regulator receiver domain ATC04_16475 PF12431 Transcriptional regulator ATC04_16480 PF17203 Single cache domain 3 ATC04_16480 PF00989 PAS fold ATC04_16480 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ATC04_16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_16485 PF03600 Citrate transporter ATC04_16490 PF04978 Protein of unknown function (DUF664) ATC04_16505 PF00999 Sodium/hydrogen exchanger family ATC04_16510 PF05958 tRNA (Uracil-5-)-methyltransferase ATC04_16525 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ATC04_16535 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ATC04_16535 PF02769 AIR synthase related protein, C-terminal domain ATC04_16535 PF00586 AIR synthase related protein, N-terminal domain ATC04_16550 PF03831 PhnA domain ATC04_16550 PF08274 PhnA Zinc-Ribbon ATC04_16605 PF04237 YjbR ATC04_16610 PF13380 CoA binding domain ATC04_16615 PF00296 Luciferase-like monooxygenase ATC04_16620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_16620 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ATC04_16620 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_16625 PF00005 ABC transporter ATC04_16625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATC04_16630 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_16630 PF12911 N-terminal TM domain of oligopeptide transport permease C ATC04_16635 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_16640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATC04_16645 PF01126 Heme oxygenase ATC04_16650 PF05368 NmrA-like family ATC04_16655 PF04545 Sigma-70, region 4 ATC04_16655 PF04542 Sigma-70 region 2 ATC04_16680 PF00296 Luciferase-like monooxygenase ATC04_16690 PF00005 ABC transporter ATC04_16700 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_16705 PF16177 Acetyl-coenzyme A synthetase N-terminus ATC04_16705 PF13193 AMP-binding enzyme C-terminal domain ATC04_16705 PF00501 AMP-binding enzyme ATC04_16710 PF02028 BCCT, betaine/carnitine/choline family transporter ATC04_16715 PF01475 Ferric uptake regulator family ATC04_16720 PF00141 Peroxidase ATC04_16725 PF02805 Metal binding domain of Ada ATC04_16725 PF12833 Helix-turn-helix domain ATC04_16725 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ATC04_16725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ATC04_16730 PF04545 Sigma-70, region 4 ATC04_16730 PF04542 Sigma-70 region 2 ATC04_16735 PF00300 Histidine phosphatase superfamily (branch 1) ATC04_16740 PF01053 Cys/Met metabolism PLP-dependent enzyme ATC04_16745 PF13380 CoA binding domain ATC04_16750 PF01497 Periplasmic binding protein ATC04_16755 PF01032 FecCD transport family ATC04_16760 PF01032 FecCD transport family ATC04_16765 PF03422 Carbohydrate binding module (family 6) ATC04_16765 PF00457 Glycosyl hydrolases family 11 ATC04_16765 PF01522 Polysaccharide deacetylase ATC04_16770 PF08220 DeoR-like helix-turn-helix domain ATC04_16770 PF00455 DeoR C terminal sensor domain ATC04_16775 PF00294 pfkB family carbohydrate kinase ATC04_16780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ATC04_16780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ATC04_16785 PF02896 PEP-utilising enzyme, TIM barrel domain ATC04_16785 PF05524 PEP-utilising enzyme, N-terminal ATC04_16785 PF00391 PEP-utilising enzyme, mobile domain ATC04_16800 PF01522 Polysaccharide deacetylase ATC04_16800 PF13739 Deacetylase PdaC ATC04_16800 PF11738 Protein of unknown function (DUF3298) ATC04_16820 PF17862 AAA+ lid domain ATC04_16820 PF06480 FtsH Extracellular ATC04_16820 PF00004 ATPase family associated with various cellular activities (AAA) ATC04_16820 PF01434 Peptidase family M41 ATC04_16825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATC04_16825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_16825 PF00205 Thiamine pyrophosphate enzyme, central domain ATC04_16835 PF00709 Adenylosuccinate synthetase ATC04_16850 PF00892 EamA-like transporter family ATC04_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATC04_16860 PF03466 LysR substrate binding domain ATC04_16865 PF01266 FAD dependent oxidoreductase ATC04_16870 PF01546 Peptidase family M20/M25/M40 ATC04_16885 PF00543 Nitrogen regulatory protein P-II ATC04_16890 PF00909 Ammonium Transporter Family ATC04_16895 PF07722 Peptidase C26 ATC04_16905 PF00265 Thymidine kinase ATC04_16915 PF00324 Amino acid permease ATC04_16920 PF00266 Aminotransferase class-V ATC04_16925 PF01037 Lrp/AsnC ligand binding domain ATC04_16935 PF00512 His Kinase A (phospho-acceptor) domain ATC04_16935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_16935 PF18719 ArlS sensor domain ATC04_16940 PF00072 Response regulator receiver domain ATC04_16940 PF00486 Transcriptional regulatory protein, C terminal ATC04_16985 PF01580 FtsK/SpoIIIE family ATC04_16985 PF12538 DNA transporter ATC04_16990 PF00069 Protein kinase domain ATC04_17000 PF01116 Fructose-bisphosphate aldolase class-II ATC04_17005 PF01551 Peptidase family M23 ATC04_17010 PF00588 SpoU rRNA Methylase family ATC04_17010 PF02527 rRNA small subunit methyltransferase G ATC04_17015 PF13344 Haloacid dehalogenase-like hydrolase ATC04_17025 PF00005 ABC transporter ATC04_17040 PF00156 Phosphoribosyl transferase domain ATC04_17050 PF02540 NAD synthase ATC04_17070 PF02770 Acyl-CoA dehydrogenase, middle domain ATC04_17070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATC04_17070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATC04_17080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATC04_17080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATC04_17085 PF00378 Enoyl-CoA hydratase/isomerase ATC04_17125 PF00877 NlpC/P60 family ATC04_17125 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain ATC04_17130 PF00582 Universal stress protein family ATC04_17135 PF00860 Permease family ATC04_17165 PF01910 Thiamine-binding protein ATC04_17185 PF02272 DHHA1 domain ATC04_17185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATC04_17185 PF01411 tRNA synthetases class II (A) ATC04_17220 PF04030 D-arabinono-1,4-lactone oxidase ATC04_17220 PF01565 FAD binding domain ATC04_17230 PF00205 Thiamine pyrophosphate enzyme, central domain ATC04_17230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATC04_17230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATC04_17240 PF08338 Domain of unknown function (DUF1731) ATC04_17240 PF01370 NAD dependent epimerase/dehydratase family ATC04_17250 PF01475 Ferric uptake regulator family ATC04_17260 PF02913 FAD linked oxidases, C-terminal domain ATC04_17260 PF01565 FAD binding domain ATC04_17280 PF00753 Metallo-beta-lactamase superfamily ATC04_17280 PF16123 Hydroxyacylglutathione hydrolase C-terminus ATC04_17295 PF00085 Thioredoxin ATC04_17300 PF02583 Metal-sensitive transcriptional repressor ATC04_17305 PF01113 Dihydrodipicolinate reductase, N-terminus ATC04_17305 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ATC04_17330 PF06441 Epoxide hydrolase N terminus ATC04_17340 PF08240 Alcohol dehydrogenase GroES-like domain ATC04_17340 PF00107 Zinc-binding dehydrogenase ATC04_17345 PF00171 Aldehyde dehydrogenase family ATC04_17365 PF01209 ubiE/COQ5 methyltransferase family ATC04_17370 PF00005 ABC transporter ATC04_17370 PF12848 ABC transporter ATC04_17370 PF16326 ABC transporter C-terminal domain ATC04_17390 PF00561 alpha/beta hydrolase fold ATC04_17420 PF01384 Phosphate transporter family ATC04_17435 PF00005 ABC transporter ATC04_17440 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_17445 PF00528 Binding-protein-dependent transport system inner membrane component ATC04_17450 PF12849 PBP superfamily domain ATC04_17460 PF06745 KaiC ATC04_17460 PF18073 Rubredoxin metal binding domain ATC04_17465 PF00633 Helix-hairpin-helix motif ATC04_17465 PF02457 DisA bacterial checkpoint controller nucleotide-binding ATC04_17465 PF10635 DisA bacterial checkpoint controller linker region ATC04_17475 PF00633 Helix-hairpin-helix motif ATC04_17475 PF00730 HhH-GPD superfamily base excision DNA repair protein ATC04_17475 PF10576 Iron-sulfur binding domain of endonuclease III ATC04_17485 PF00583 Acetyltransferase (GNAT) family ATC04_17510 PF01510 N-acetylmuramoyl-L-alanine amidase ATC04_17510 PF01471 Putative peptidoglycan binding domain ATC04_17730 PF00239 Resolvase, N terminal domain ATC04_17730 PF02796 Helix-turn-helix domain of resolvase ATC04_17750 PF01510 N-acetylmuramoyl-L-alanine amidase ATC04_17750 PF01471 Putative peptidoglycan binding domain ATC04_17810 PF13614 AAA domain ATC04_17810 PF00376 MerR family regulatory protein ATC04_17825 PF00665 Integrase core domain ATC04_17825 PF09299 Mu transposase, C-terminal ATC04_17830 PF00239 Resolvase, N terminal domain ATC04_17830 PF02796 Helix-turn-helix domain of resolvase ATC04_17850 PF00581 Rhodanese-like domain ATC04_17855 PF11127 Protein of unknown function (DUF2892) ATC04_17855 PF00581 Rhodanese-like domain ATC04_17860 PF00753 Metallo-beta-lactamase superfamily ATC04_17865 PF02583 Metal-sensitive transcriptional repressor ATC04_17875 PF03780 Asp23 family, cell envelope-related function ATC04_17880 PF04542 Sigma-70 region 2 ATC04_17880 PF08281 Sigma-70, region 4 ATC04_17890 PF00239 Resolvase, N terminal domain ATC04_17890 PF02796 Helix-turn-helix domain of resolvase ATC04_17895 PF06114 IrrE N-terminal-like domain ATC04_17905 PF13361 UvrD-like helicase C-terminal domain ATC04_17905 PF00580 UvrD/REP helicase N-terminal domain ATC04_17910 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ATC04_17915 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ATC04_17935 PF04542 Sigma-70 region 2 ATC04_17935 PF04545 Sigma-70, region 4 ATC04_17940 PF02469 Fasciclin domain ATC04_17955 PF01551 Peptidase family M23 ATC04_17955 PF10145 Phage-related minor tail protein ATC04_17955 PF01464 Transglycosylase SLT domain ATC04_18000 PF13276 HTH-like domain ATC04_18000 PF00665 Integrase core domain ATC04_18005 PF01527 Transposase ATC04_18045 PF03814 Potassium-transporting ATPase A subunit ATC04_18055 PF02669 K+-transporting ATPase, c chain ATC04_18060 PF13493 Domain of unknown function (DUF4118) ATC04_18060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATC04_18060 PF02702 Osmosensitive K+ channel His kinase sensor domain ATC04_18065 PF00486 Transcriptional regulatory protein, C terminal ATC04_18065 PF00072 Response regulator receiver domain ATC04_18070 PF00239 Resolvase, N terminal domain ATC04_18070 PF02796 Helix-turn-helix domain of resolvase ATC04_18085 PF10703 MoaF N-terminal domain ATC04_18085 PF17409 MoaF C-terminal domain ATC04_18090 PF00239 Resolvase, N terminal domain ATC04_18090 PF02796 Helix-turn-helix domain of resolvase ATC04_18100 PF16555 Gram-positive pilin subunit D1, N-terminal domain ATC04_18100 PF00746 LPXTG cell wall anchor motif ATC04_18110 PF10544 T5orf172 domain ATC04_18150 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ATC04_18150 PF01610 Transposase ATC04_18150 PF13542 Helix-turn-helix domain of transposase family ISL3 ATC04_18180 PF04226 Transglycosylase associated protein ATC04_18245 PF13614 AAA domain ATC04_18245 PF00376 MerR family regulatory protein ATC04_18260 PF09299 Mu transposase, C-terminal ATC04_18260 PF00665 Integrase core domain ATC04_18265 PF02796 Helix-turn-helix domain of resolvase ATC04_18265 PF00239 Resolvase, N terminal domain ATC04_18310 PF01464 Transglycosylase SLT domain ATC04_18310 PF10145 Phage-related minor tail protein ATC04_18310 PF01551 Peptidase family M23 ATC04_18330 PF00465 Iron-containing alcohol dehydrogenase ATC04_18335 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal ATC04_18335 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal ATC04_18350 PF01613 Flavin reductase like domain ATC04_18360 PF00775 Dioxygenase ATC04_18360 PF04444 Catechol dioxygenase N terminus ATC04_18370 PF06574 FAD synthetase ATC04_18370 PF01687 Riboflavin kinase ATC04_18375 PF02082 Transcriptional regulator ATC04_18385 PF02910 Fumarate reductase flavoprotein C-term ATC04_18385 PF00890 FAD binding domain ATC04_18390 PF01526 Tn3 transposase DDE domain ATC04_18390 PF13700 Domain of unknown function (DUF4158) ATC04_18435 PF13614 AAA domain ATC04_18460 PF02384 N-6 DNA Methylase ATC04_18475 PF00239 Resolvase, N terminal domain ATC04_18475 PF02796 Helix-turn-helix domain of resolvase ATC04_18550 PF01551 Peptidase family M23 ATC04_18550 PF10145 Phage-related minor tail protein ATC04_18550 PF01464 Transglycosylase SLT domain ATC04_18570 PF00465 Iron-containing alcohol dehydrogenase ATC04_18575 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal ATC04_18575 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal