ATC04_00050	SM00470	ParB-like nuclease domain
ATC04_00080	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_00100	SM00857	Resolvase, N terminal domain
ATC04_00110	SM00342	helix_turn_helix, arabinose operon control protein
ATC04_00130	SM00382	ATPases associated with a variety of cellular activities
ATC04_00130	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC04_00175	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_00225	SM00905	Dihydroneopterin aldolase
ATC04_00240	SM00382	ATPases associated with a variety of cellular activities
ATC04_00285	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_00315	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC04_00325	SM00450	Rhodanese Homology Domain
ATC04_00340	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_00375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_00420	SM00886	Stress responsive A/B Barrel Domain
ATC04_00430	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_00495	SM00354	helix_turn _helix lactose operon repressor
ATC04_00515	SM00240	Forkhead associated domain
ATC04_00520	SM00240	Forkhead associated domain
ATC04_00525	SM00331	Sigma factor PP2C-like phosphatases
ATC04_00525	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC04_00540	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_00540	SM00740	ATC04_00540
ATC04_00545	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_00545	SM00740	ATC04_00545
ATC04_00625	SM00434	DNA Topoisomerase IV
ATC04_00630	SM00387	Histidine kinase-like ATPases
ATC04_00630	SM00433	TopoisomeraseII
ATC04_00645	SM00480	DNA polymerase III beta subunit
ATC04_00650	SM00382	ATPases associated with a variety of cellular activities
ATC04_00650	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATC04_00660	SM01234	ATC04_00660
ATC04_00670	SM00393	Putative single-stranded nucleic acids-binding domain
ATC04_00685	SM00470	ParB-like nuclease domain
ATC04_00715	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_00770	SM00382	ATPases associated with a variety of cellular activities
ATC04_00785	SM00421	helix_turn_helix, Lux Regulon
ATC04_00785	SM00448	cheY-homologous receiver domain
ATC04_00920	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_00925	SM00903	Flavin reductase like domain
ATC04_00960	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_00975	SM00822	ATC04_00975
ATC04_01025	SM00354	helix_turn _helix lactose operon repressor
ATC04_01035	SM01007	Class II Aldolase and Adducin N-terminal domain
ATC04_01050	SM00382	ATPases associated with a variety of cellular activities
ATC04_01110	SM00478	endonuclease III
ATC04_01110	SM01009	AlkA N-terminal domain
ATC04_01115	SM00822	ATC04_01115
ATC04_01125	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_01160	SM00382	ATPases associated with a variety of cellular activities
ATC04_01175	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_01180	SM00919	Malic enzyme, NAD binding domain
ATC04_01180	SM01274	ATC04_01180
ATC04_01205	SM00248	ankyrin repeats
ATC04_01270	SM00226	Low molecular weight phosphatase family
ATC04_01280	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_01320	SM00822	ATC04_01320
ATC04_01390	SM00382	ATPases associated with a variety of cellular activities
ATC04_01395	SM00382	ATPases associated with a variety of cellular activities
ATC04_01400	SM00822	ATC04_01400
ATC04_01410	SM00882	Coenzyme A transferase
ATC04_01415	SM00882	Coenzyme A transferase
ATC04_01470	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_01485	SM00882	Coenzyme A transferase
ATC04_01490	SM00882	Coenzyme A transferase
ATC04_01510	SM00893	Electron transfer flavoprotein domain
ATC04_01515	SM00893	Electron transfer flavoprotein domain
ATC04_01540	SM00903	Flavin reductase like domain
ATC04_01550	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC04_01560	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_01580	SM00893	Electron transfer flavoprotein domain
ATC04_01585	SM00893	Electron transfer flavoprotein domain
ATC04_01590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_01590	SM00895	ATC04_01590
ATC04_01605	SM00382	ATPases associated with a variety of cellular activities
ATC04_01610	SM00382	ATPases associated with a variety of cellular activities
ATC04_01615	SM01130	ATC04_01615
ATC04_01635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_01635	SM00895	ATC04_01635
ATC04_01685	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_01720	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_01720	SM00895	ATC04_01720
ATC04_01790	SM00052	Putative diguanylate phosphodiesterase
ATC04_01795	SM00267	diguanylate cyclase
ATC04_01865	SM00878	Biotin carboxylase C-terminal domain
ATC04_01890	SM00642	Alpha-amylase domain
ATC04_01925	SM00382	ATPases associated with a variety of cellular activities
ATC04_01965	SM00357	Cold shock protein domain
ATC04_02030	SM01022	ATC04_02030
ATC04_02050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_02050	SM00387	Histidine kinase-like ATPases
ATC04_02050	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_02055	SM00448	cheY-homologous receiver domain
ATC04_02055	SM00862	Transcriptional regulatory protein, C terminal
ATC04_02080	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_02080	SM01091	Transporter associated domain
ATC04_02085	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_02100	SM00894	Excalibur calcium-binding domain
ATC04_02150	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_02205	SM00382	ATPases associated with a variety of cellular activities
ATC04_02385	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
ATC04_02405	SM00959	Rho termination factor, N-terminal domain
ATC04_02415	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_02495	SM00382	ATPases associated with a variety of cellular activities
ATC04_02500	SM00382	ATPases associated with a variety of cellular activities
ATC04_02510	SM00881	CoA binding domain
ATC04_02625	SM00893	Electron transfer flavoprotein domain
ATC04_02630	SM00893	Electron transfer flavoprotein domain
ATC04_02650	SM00287	Bacterial SH3 domain homologues
ATC04_02660	SM00382	ATPases associated with a variety of cellular activities
ATC04_02695	SM00849	Metallo-beta-lactamase superfamily
ATC04_02705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_02705	SM00895	ATC04_02705
ATC04_02780	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_02855	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_02865	SM00382	ATPases associated with a variety of cellular activities
ATC04_02895	SM00421	helix_turn_helix, Lux Regulon
ATC04_02895	SM00448	cheY-homologous receiver domain
ATC04_03065	SM01011	Aminopeptidase P, N-terminal domain
ATC04_03070	SM00421	helix_turn_helix, Lux Regulon
ATC04_03085	SM00382	ATPases associated with a variety of cellular activities
ATC04_03100	SM00421	helix_turn_helix, Lux Regulon
ATC04_03100	SM00448	cheY-homologous receiver domain
ATC04_03145	SM01092	CO dehydrogenase flavoprotein C-terminal domain
ATC04_03150	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ATC04_03165	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_03165	SM00895	ATC04_03165
ATC04_03175	SM00862	Transcriptional regulatory protein, C terminal
ATC04_03200	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ATC04_03250	SM00861	Transketolase, pyrimidine binding domain
ATC04_03280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_03280	SM00895	ATC04_03280
ATC04_03310	SM00855	Phosphoglycerate mutase family
ATC04_03325	SM00882	Coenzyme A transferase
ATC04_03330	SM00882	Coenzyme A transferase
ATC04_03340	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_03345	SM01119	ATC04_03345
ATC04_03400	SM00344	helix_turn_helix ASNC type
ATC04_03425	SM00382	ATPases associated with a variety of cellular activities
ATC04_03540	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_03565	SM00919	Malic enzyme, NAD binding domain
ATC04_03565	SM01274	ATC04_03565
ATC04_03610	SM00382	ATPases associated with a variety of cellular activities
ATC04_03625	SM00867	YceI-like domain 
ATC04_03660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_03660	SM00895	ATC04_03660
ATC04_03680	SM00487	DEAD-like helicases superfamily
ATC04_03680	SM00490	helicase superfamily c-terminal domain
ATC04_03685	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_03715	SM00344	helix_turn_helix ASNC type
ATC04_03770	SM00226	Low molecular weight phosphatase family
ATC04_03780	SM00344	helix_turn_helix ASNC type
ATC04_03790	SM00422	helix_turn_helix, mercury resistance
ATC04_03810	SM00287	Bacterial SH3 domain homologues
ATC04_03820	SM00382	ATPases associated with a variety of cellular activities
ATC04_03835	SM00382	ATPases associated with a variety of cellular activities
ATC04_03840	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_03850	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_03850	SM00866	ATC04_03850
ATC04_03860	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC04_03860	SM00899	ATC04_03860
ATC04_03910	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_03915	SM00822	ATC04_03915
ATC04_03925	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC04_03945	SM00382	ATPases associated with a variety of cellular activities
ATC04_03960	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_03960	SM00895	ATC04_03960
ATC04_04000	SM00822	ATC04_04000
ATC04_04090	SM00344	helix_turn_helix ASNC type
ATC04_04140	SM00422	helix_turn_helix, mercury resistance
ATC04_04160	SM00382	ATPases associated with a variety of cellular activities
ATC04_04165	SM00421	helix_turn_helix, Lux Regulon
ATC04_04165	SM00448	cheY-homologous receiver domain
ATC04_04170	SM00387	Histidine kinase-like ATPases
ATC04_04190	SM00382	ATPases associated with a variety of cellular activities
ATC04_04195	SM00382	ATPases associated with a variety of cellular activities
ATC04_04220	SM00344	helix_turn_helix ASNC type
ATC04_04240	SM00357	Cold shock protein domain
ATC04_04275	SM00363	S4 RNA-binding domain
ATC04_04285	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_04285	SM00732	Likely ribonuclease with RNase H fold.
ATC04_04295	SM00287	Bacterial SH3 domain homologues
ATC04_04300	SM00421	helix_turn_helix, Lux Regulon
ATC04_04300	SM00448	cheY-homologous receiver domain
ATC04_04340	SM00487	DEAD-like helicases superfamily
ATC04_04340	SM00490	helicase superfamily c-terminal domain
ATC04_04340	SM00847	Helicase associated domain (HA2)  Add an annotation
ATC04_04395	SM00382	ATPases associated with a variety of cellular activities
ATC04_04410	SM00849	Metallo-beta-lactamase superfamily
ATC04_04425	SM00382	ATPases associated with a variety of cellular activities
ATC04_04430	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_04435	SM00382	ATPases associated with a variety of cellular activities
ATC04_04440	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_04505	SM00924	MgtE intracellular N domain
ATC04_04565	SM00342	helix_turn_helix, arabinose operon control protein
ATC04_04615	SM01236	ATC04_04615
ATC04_04620	SM00704	CDGSH-type zinc finger. Function unknown.
ATC04_04660	SM00822	ATC04_04660
ATC04_04685	SM00344	helix_turn_helix ASNC type
ATC04_04700	SM00382	ATPases associated with a variety of cellular activities
ATC04_04715	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_04745	SM00411	bacterial (prokaryotic) histone like domain
ATC04_04750	SM00411	bacterial (prokaryotic) histone like domain
ATC04_04805	SM00382	ATPases associated with a variety of cellular activities
ATC04_04815	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_04900	SM00382	ATPases associated with a variety of cellular activities
ATC04_04910	SM00155	Phospholipase D. Active site motifs.
ATC04_04925	SM00226	Low molecular weight phosphatase family
ATC04_04935	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_04945	SM00487	DEAD-like helicases superfamily
ATC04_04945	SM00490	helicase superfamily c-terminal domain
ATC04_04970	SM00271	DnaJ molecular chaperone homology domain
ATC04_04975	SM00422	helix_turn_helix, mercury resistance
ATC04_05005	SM00382	ATPases associated with a variety of cellular activities
ATC04_05005	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC04_05020	SM00421	helix_turn_helix, Lux Regulon
ATC04_05065	SM01209	ATC04_05065
ATC04_05065	SM01210	ATC04_05065
ATC04_05075	SM00382	ATPases associated with a variety of cellular activities
ATC04_05080	SM00382	ATPases associated with a variety of cellular activities
ATC04_05105	SM00100	Cyclic nucleotide-monophosphate binding domain
ATC04_05105	SM00419	helix_turn_helix, cAMP Regulatory protein
ATC04_05130	SM00478	endonuclease III
ATC04_05130	SM00525	ATC04_05130
ATC04_05140	SM00482	DNA polymerase A domain
ATC04_05180	SM00487	DEAD-like helicases superfamily
ATC04_05180	SM00490	helicase superfamily c-terminal domain
ATC04_05190	SM00450	Rhodanese Homology Domain
ATC04_05205	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_05210	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATC04_05210	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATC04_05210	SM00493	ATC04_05210
ATC04_05250	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_05255	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATC04_05275	SM00881	CoA binding domain
ATC04_05285	SM00855	Phosphoglycerate mutase family
ATC04_05355	SM00421	helix_turn_helix, Lux Regulon
ATC04_05365	SM00090	RIO-like kinase
ATC04_05430	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_05430	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ATC04_05435	SM00382	ATPases associated with a variety of cellular activities
ATC04_05475	SM00344	helix_turn_helix ASNC type
ATC04_05485	SM00861	Transketolase, pyrimidine binding domain
ATC04_05500	SM00014	Acid phosphatase homologues
ATC04_05505	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC04_05520	SM00382	ATPases associated with a variety of cellular activities
ATC04_05530	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_05615	SM00487	DEAD-like helicases superfamily
ATC04_05615	SM00490	helicase superfamily c-terminal domain
ATC04_05835	SM00710	Parallel beta-helix repeats
ATC04_05875	SM00954	Region found in RelA / SpoT proteins
ATC04_05920	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC04_05945	SM00855	Phosphoglycerate mutase family
ATC04_05960	SM00862	Transcriptional regulatory protein, C terminal
ATC04_06005	SM00421	helix_turn_helix, Lux Regulon
ATC04_06005	SM00448	cheY-homologous receiver domain
ATC04_06025	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATC04_06030	SM00649	Ribosomal protein L11/L12
ATC04_06065	SM00663	RNA polymerase I subunit A N-terminus
ATC04_06085	SM00838	Elongation factor G C-terminus
ATC04_06085	SM00889	Elongation factor G, domain IV
ATC04_06100	SM01403	ATC04_06100
ATC04_06120	SM01382	ATC04_06120
ATC04_06120	SM01383	ATC04_06120
ATC04_06135	SM00322	K homology RNA-binding domain
ATC04_06160	SM00342	helix_turn_helix, arabinose operon control protein
ATC04_06175	SM01374	ATC04_06175
ATC04_06180	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATC04_06235	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_06250	SM00662	RNA polymerases D
ATC04_06285	SM00984	UDP binding domain
ATC04_06335	SM01005	Alanine racemase, C-terminal domain
ATC04_06380	SM00883	Chaperonin 10 Kd subunit
ATC04_06405	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_06405	SM01240	ATC04_06405
ATC04_06420	SM00507	HNH nucleases
ATC04_06430	SM01240	ATC04_06430
ATC04_06460	SM00858	ATC04_06460
ATC04_06480	SM00344	helix_turn_helix ASNC type
ATC04_06575	SM00855	Phosphoglycerate mutase family
ATC04_06595	SM00363	S4 RNA-binding domain
ATC04_06630	SM00849	Metallo-beta-lactamase superfamily
ATC04_06660	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_06670	SM00226	Low molecular weight phosphatase family
ATC04_06750	SM00450	Rhodanese Homology Domain
ATC04_06760	SM00838	Elongation factor G C-terminus
ATC04_06770	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_06825	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_06830	SM00382	ATPases associated with a variety of cellular activities
ATC04_06870	SM00924	MgtE intracellular N domain
ATC04_06880	SM01011	Aminopeptidase P, N-terminal domain
ATC04_06885	SM00481	DNA polymerase alpha chain like domain
ATC04_06895	SM00487	DEAD-like helicases superfamily
ATC04_06895	SM00490	helicase superfamily c-terminal domain
ATC04_06900	SM00955	ATC04_06900
ATC04_06950	SM01004	Delta-aminolevulinic acid dehydratase
ATC04_06975	SM00382	ATPases associated with a variety of cellular activities
ATC04_06975	SM00930	ATC04_06975
ATC04_06980	SM00479	ATC04_06980
ATC04_07010	SM00341	Helicase and RNase D C-terminal
ATC04_07070	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC04_07075	SM00893	Electron transfer flavoprotein domain
ATC04_07080	SM00893	Electron transfer flavoprotein domain
ATC04_07100	SM00271	DnaJ molecular chaperone homology domain
ATC04_07105	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC04_07190	SM00382	ATPases associated with a variety of cellular activities
ATC04_07195	SM00830	Chorismate mutase type II
ATC04_07205	SM00448	cheY-homologous receiver domain
ATC04_07205	SM00862	Transcriptional regulatory protein, C terminal
ATC04_07210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_07210	SM00387	Histidine kinase-like ATPases
ATC04_07210	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_07215	SM00909	Sporulation and spore germination
ATC04_07235	SM00957	SecA DEAD-like domain
ATC04_07235	SM00958	SecA preprotein cross-linking domain
ATC04_07270	SM00387	Histidine kinase-like ATPases
ATC04_07275	SM00257	Lysin motif
ATC04_07360	SM00864	Tubulin/FtsZ family, GTPase domain
ATC04_07360	SM00865	Tubulin/FtsZ family, C-terminal domain
ATC04_07390	SM00363	S4 RNA-binding domain
ATC04_07395	SM00481	DNA polymerase alpha chain like domain
ATC04_07425	SM01230	ATC04_07425
ATC04_07450	SM01230	ATC04_07450
ATC04_07465	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_07475	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_07520	SM00387	Histidine kinase-like ATPases
ATC04_07520	SM00433	TopoisomeraseII
ATC04_07545	SM00382	ATPases associated with a variety of cellular activities
ATC04_07550	SM00434	DNA Topoisomerase IV
ATC04_07555	SM00881	CoA binding domain
ATC04_07670	SM00861	Transketolase, pyrimidine binding domain
ATC04_07730	SM00341	Helicase and RNase D C-terminal
ATC04_07730	SM00474	3'-5' exonuclease
ATC04_07775	SM00450	Rhodanese Homology Domain
ATC04_07960	SM00448	cheY-homologous receiver domain
ATC04_07960	SM01012	ATC04_07960
ATC04_07985	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATC04_07985	SM00474	3'-5' exonuclease
ATC04_07985	SM00475	5'-3' exonuclease
ATC04_07985	SM00482	DNA polymerase A domain
ATC04_08000	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_08030	SM01043	Bacterial transcriptional activator domain
ATC04_08060	SM00487	DEAD-like helicases superfamily
ATC04_08060	SM00490	helicase superfamily c-terminal domain
ATC04_08070	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_08100	SM00235	Zinc-dependent metalloprotease
ATC04_08120	SM00487	DEAD-like helicases superfamily
ATC04_08120	SM00490	helicase superfamily c-terminal domain
ATC04_08135	SM00849	Metallo-beta-lactamase superfamily
ATC04_08140	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_08160	SM00014	Acid phosphatase homologues
ATC04_08175	SM00563	Phosphate acyltransferases
ATC04_08180	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC04_08180	SM00465	GIY-YIG type nucleases (URI domain)
ATC04_08205	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC04_08260	SM00861	Transketolase, pyrimidine binding domain
ATC04_08290	SM00382	ATPases associated with a variety of cellular activities
ATC04_08310	SM00382	ATPases associated with a variety of cellular activities
ATC04_08345	SM00382	ATPases associated with a variety of cellular activities
ATC04_08355	SM00344	helix_turn_helix ASNC type
ATC04_08385	SM00382	ATPases associated with a variety of cellular activities
ATC04_08390	SM00903	Flavin reductase like domain
ATC04_08395	SM00422	helix_turn_helix, mercury resistance
ATC04_08430	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC04_08430	SM01232	ATC04_08430
ATC04_08465	SM00382	ATPases associated with a variety of cellular activities
ATC04_08465	SM00994	ClpX C4-type zinc finger
ATC04_08465	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC04_08525	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_08530	SM00382	ATPases associated with a variety of cellular activities
ATC04_08550	SM00479	ATC04_08550
ATC04_08570	SM00421	helix_turn_helix, Lux Regulon
ATC04_08570	SM00448	cheY-homologous receiver domain
ATC04_08605	SM00562	ATC04_08605
ATC04_08635	SM00756	ATC04_08635
ATC04_08640	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_08660	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATC04_08755	SM00344	helix_turn_helix ASNC type
ATC04_08760	SM00822	ATC04_08760
ATC04_08790	SM00382	ATPases associated with a variety of cellular activities
ATC04_08885	SM00357	Cold shock protein domain
ATC04_08895	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_08930	SM00849	Metallo-beta-lactamase superfamily
ATC04_08935	SM00829	Enoylreductase
ATC04_08965	SM00481	DNA polymerase alpha chain like domain
ATC04_08990	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_08995	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC04_09005	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_09005	SM00876	Biotin and Thiamin Synthesis associated domain
ATC04_09035	SM00382	ATPases associated with a variety of cellular activities
ATC04_09050	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC04_09050	SM01134	ATC04_09050
ATC04_09100	SM00854	Bacterial capsule synthesis protein PGA_cap
ATC04_09120	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC04_09125	SM00382	ATPases associated with a variety of cellular activities
ATC04_09130	SM01323	ATC04_09130
ATC04_09145	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_09145	SM00954	Region found in RelA / SpoT proteins
ATC04_09185	SM00382	ATPases associated with a variety of cellular activities
ATC04_09190	SM00363	S4 RNA-binding domain
ATC04_09190	SM01390	ATC04_09190
ATC04_09205	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC04_09210	SM00732	Likely ribonuclease with RNase H fold.
ATC04_09245	SM00841	Elongation factor P, C-terminal
ATC04_09245	SM01185	ATC04_09245
ATC04_09275	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATC04_09280	SM00851	MGS-like domain
ATC04_09280	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATC04_09285	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATC04_09295	SM00072	Guanylate kinase homologues.
ATC04_09300	SM01409	ATC04_09300
ATC04_09375	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC04_09400	SM00838	Elongation factor G C-terminus
ATC04_09405	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_09425	SM00271	DnaJ molecular chaperone homology domain
ATC04_09435	SM00909	Sporulation and spore germination
ATC04_09450	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_09450	SM01091	Transporter associated domain
ATC04_09465	SM00917	LeuA allosteric (dimerisation) domain
ATC04_09520	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_09520	SM00866	ATC04_09520
ATC04_09590	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_09590	SM00419	helix_turn_helix, cAMP Regulatory protein
ATC04_09615	SM00244	prohibitin homologues
ATC04_09635	SM00487	DEAD-like helicases superfamily
ATC04_09635	SM00490	helicase superfamily c-terminal domain
ATC04_09635	SM01142	ATC04_09635
ATC04_09685	SM00382	ATPases associated with a variety of cellular activities
ATC04_09745	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_09745	SM00387	Histidine kinase-like ATPases
ATC04_09745	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_09750	SM00448	cheY-homologous receiver domain
ATC04_09750	SM00862	Transcriptional regulatory protein, C terminal
ATC04_09790	SM00822	ATC04_09790
ATC04_09865	SM00829	Enoylreductase
ATC04_09910	SM00487	DEAD-like helicases superfamily
ATC04_09940	SM00382	ATPases associated with a variety of cellular activities
ATC04_09975	SM00822	ATC04_09975
ATC04_10000	SM00382	ATPases associated with a variety of cellular activities
ATC04_10005	SM00954	Region found in RelA / SpoT proteins
ATC04_10050	SM00479	ATC04_10050
ATC04_10065	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_10070	SM00829	Enoylreductase
ATC04_10080	SM00421	helix_turn_helix, Lux Regulon
ATC04_10120	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC04_10195	SM00829	Enoylreductase
ATC04_10215	SM01350	ATC04_10215
ATC04_10220	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_10220	SM00895	ATC04_10220
ATC04_10290	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATC04_10300	SM00825	Beta-ketoacyl synthase
ATC04_10330	SM00382	ATPases associated with a variety of cellular activities
ATC04_10400	SM00507	HNH nucleases
ATC04_10435	SM00155	Phospholipase D. Active site motifs.
ATC04_10470	SM00382	ATPases associated with a variety of cellular activities
ATC04_10470	SM00962	SRP54-type protein, GTPase domain
ATC04_10470	SM00963	SRP54-type protein, helical bundle domain
ATC04_10510	SM00382	ATPases associated with a variety of cellular activities
ATC04_10510	SM00962	SRP54-type protein, GTPase domain
ATC04_10510	SM00963	SRP54-type protein, helical bundle domain
ATC04_10525	SM00968	SMC proteins Flexible Hinge Domain
ATC04_10535	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC04_10535	SM01232	ATC04_10535
ATC04_10540	SM00358	Double-stranded RNA binding motif
ATC04_10540	SM00535	Ribonuclease III family
ATC04_10600	SM00382	ATPases associated with a variety of cellular activities
ATC04_10640	SM00487	DEAD-like helicases superfamily
ATC04_10640	SM00490	helicase superfamily c-terminal domain
ATC04_10645	SM01120	ATC04_10645
ATC04_10670	SM00563	Phosphate acyltransferases
ATC04_10750	SM01329	ATC04_10750
ATC04_10760	SM00421	helix_turn_helix, Lux Regulon
ATC04_10760	SM00448	cheY-homologous receiver domain
ATC04_10820	SM00710	Parallel beta-helix repeats
ATC04_10840	SM00226	Low molecular weight phosphatase family
ATC04_10870	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ATC04_10870	SM00560	LamG-like jellyroll fold domain
ATC04_10895	SM00421	helix_turn_helix, Lux Regulon
ATC04_10995	SM00421	helix_turn_helix, Lux Regulon
ATC04_11000	SM00421	helix_turn_helix, Lux Regulon
ATC04_11075	SM00052	Putative diguanylate phosphodiesterase
ATC04_11075	SM00267	diguanylate cyclase
ATC04_11120	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_11135	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_11310	SM00382	ATPases associated with a variety of cellular activities
ATC04_11395	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_11455	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_11470	SM00507	HNH nucleases
ATC04_11480	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_11480	SM00895	ATC04_11480
ATC04_11500	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_11510	SM00382	ATPases associated with a variety of cellular activities
ATC04_11555	SM00642	Alpha-amylase domain
ATC04_11560	SM00354	helix_turn _helix lactose operon repressor
ATC04_11570	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_11600	SM00479	ATC04_11600
ATC04_11610	SM00382	ATPases associated with a variety of cellular activities
ATC04_11615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_11715	SM00382	ATPases associated with a variety of cellular activities
ATC04_11715	SM00487	DEAD-like helicases superfamily
ATC04_11725	SM00507	HNH nucleases
ATC04_11735	SM00382	ATPases associated with a variety of cellular activities
ATC04_11780	SM00382	ATPases associated with a variety of cellular activities
ATC04_11835	SM00937	ATC04_11835
ATC04_11840	SM00357	Cold shock protein domain
ATC04_11840	SM00382	ATPases associated with a variety of cellular activities
ATC04_11840	SM00959	Rho termination factor, N-terminal domain
ATC04_11865	SM00836	DALR anticodon binding domain
ATC04_11865	SM01016	Arginyl tRNA synthetase N terminal dom
ATC04_11875	SM00382	ATPases associated with a variety of cellular activities
ATC04_11890	SM00382	ATPases associated with a variety of cellular activities
ATC04_11890	SM00487	DEAD-like helicases superfamily
ATC04_11890	SM00490	helicase superfamily c-terminal domain
ATC04_11890	SM00847	Helicase associated domain (HA2)  Add an annotation
ATC04_11900	SM00450	Rhodanese Homology Domain
ATC04_11905	SM00849	Metallo-beta-lactamase superfamily
ATC04_11930	SM00382	ATPases associated with a variety of cellular activities
ATC04_11940	SM01091	Transporter associated domain
ATC04_11945	SM00861	Transketolase, pyrimidine binding domain
ATC04_11980	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC04_12020	SM00382	ATPases associated with a variety of cellular activities
ATC04_12025	SM00937	ATC04_12025
ATC04_12065	SM00857	Resolvase, N terminal domain
ATC04_12125	SM00857	Resolvase, N terminal domain
ATC04_12175	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_12175	SM00740	ATC04_12175
ATC04_12185	SM00563	Phosphate acyltransferases
ATC04_12210	SM00878	Biotin carboxylase C-terminal domain
ATC04_12220	SM00422	helix_turn_helix, mercury resistance
ATC04_12230	SM00422	helix_turn_helix, mercury resistance
ATC04_12235	SM00240	Forkhead associated domain
ATC04_12250	SM00382	ATPases associated with a variety of cellular activities
ATC04_12285	SM00363	S4 RNA-binding domain
ATC04_12315	SM00387	Histidine kinase-like ATPases
ATC04_12320	SM00448	cheY-homologous receiver domain
ATC04_12335	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_12335	SM00895	ATC04_12335
ATC04_12360	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_12395	SM00363	S4 RNA-binding domain
ATC04_12460	SM00506	Appr-1"-p processing enzyme
ATC04_12490	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC04_12495	SM00829	Enoylreductase
ATC04_12540	SM00873	B3/4 domain
ATC04_12540	SM00874	tRNA synthetase B5 domain
ATC04_12540	SM00896	Ferredoxin-fold anticodon binding domain
ATC04_12560	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATC04_12615	SM00257	Lysin motif
ATC04_12625	SM00487	DEAD-like helicases superfamily
ATC04_12625	SM00491	ATC04_12625
ATC04_12650	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_12660	SM00382	ATPases associated with a variety of cellular activities
ATC04_12670	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_12685	SM00382	ATPases associated with a variety of cellular activities
ATC04_12685	SM00843	ATC04_12685
ATC04_12705	SM00382	ATPases associated with a variety of cellular activities
ATC04_12730	SM00849	Metallo-beta-lactamase superfamily
ATC04_12735	SM01130	ATC04_12735
ATC04_12885	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_12885	SM00322	K homology RNA-binding domain
ATC04_12890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_12890	SM00895	ATC04_12890
ATC04_12905	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_12945	SM00448	cheY-homologous receiver domain
ATC04_12950	SM00387	Histidine kinase-like ATPases
ATC04_13025	SM01387	ATC04_13025
ATC04_13035	SM00904	Riboflavin kinase
ATC04_13060	SM00507	HNH nucleases
ATC04_13080	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATC04_13145	SM00421	helix_turn_helix, Lux Regulon
ATC04_13145	SM00448	cheY-homologous receiver domain
ATC04_13205	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC04_13230	SM00382	ATPases associated with a variety of cellular activities
ATC04_13250	SM00382	ATPases associated with a variety of cellular activities
ATC04_13275	SM00861	Transketolase, pyrimidine binding domain
ATC04_13285	SM00344	helix_turn_helix ASNC type
ATC04_13295	SM01209	ATC04_13295
ATC04_13315	SM00387	Histidine kinase-like ATPases
ATC04_13320	SM00448	cheY-homologous receiver domain
ATC04_13320	SM00850	LytTr DNA-binding domain
ATC04_13415	SM01006	Siderophore biosynthesis protein domain
ATC04_13435	SM00382	ATPases associated with a variety of cellular activities
ATC04_13460	SM00400	zinc finger
ATC04_13460	SM00493	ATC04_13460
ATC04_13465	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_13570	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC04_13570	SM01134	ATC04_13570
ATC04_13645	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_13670	SM00354	helix_turn _helix lactose operon repressor
ATC04_13680	SM00829	Enoylreductase
ATC04_13710	SM00382	ATPases associated with a variety of cellular activities
ATC04_13715	SM00382	ATPases associated with a variety of cellular activities
ATC04_13750	SM00845	GatB domain
ATC04_13820	SM00292	breast cancer carboxy-terminal domain
ATC04_13820	SM00532	Ligase N family
ATC04_13825	SM00331	Sigma factor PP2C-like phosphatases
ATC04_13825	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC04_13830	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
ATC04_13880	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_13930	SM00878	Biotin carboxylase C-terminal domain
ATC04_13975	SM01133	ATC04_13975
ATC04_13995	SM00487	DEAD-like helicases superfamily
ATC04_13995	SM00490	helicase superfamily c-terminal domain
ATC04_13995	SM00982	ATC04_13995
ATC04_13995	SM01058	CarD-like/TRCF domain
ATC04_14020	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATC04_14020	SM00267	diguanylate cyclase
ATC04_14040	SM01400	ATC04_14040
ATC04_14055	SM00382	ATPases associated with a variety of cellular activities
ATC04_14120	SM00650	Ribosomal RNA adenine dimethylases
ATC04_14125	SM01208	ATC04_14125
ATC04_14145	SM00460	Transglutaminase/protease-like homologues
ATC04_14220	SM01001	AIR carboxylase
ATC04_14245	SM00947	Carbonic anhydrase
ATC04_14295	SM00670	Large family of predicted nucleotide-binding domains
ATC04_14400	SM01192	ATC04_14400
ATC04_14400	SM01193	ATC04_14400
ATC04_14425	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
ATC04_14445	SM00382	ATPases associated with a variety of cellular activities
ATC04_14525	SM00421	helix_turn_helix, Lux Regulon
ATC04_14525	SM00448	cheY-homologous receiver domain
ATC04_14550	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_14620	SM00342	helix_turn_helix, arabinose operon control protein
ATC04_14620	SM00871	Bacterial transcription activator, effector binding domain
ATC04_14655	SM00857	Resolvase, N terminal domain
ATC04_14670	SM00857	Resolvase, N terminal domain
ATC04_14725	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_14785	SM00422	helix_turn_helix, mercury resistance
ATC04_14795	SM00857	Resolvase, N terminal domain
ATC04_14835	SM00822	ATC04_14835
ATC04_14845	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_14845	SM00895	ATC04_14845
ATC04_14850	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_14875	SM01060	ATC04_14875
ATC04_14885	SM00796	Allophanate hydrolase subunit 1
ATC04_14885	SM00797	Allophanate hydrolase subunit 2
ATC04_14890	SM00878	Biotin carboxylase C-terminal domain
ATC04_14895	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_14895	SM00895	ATC04_14895
ATC04_14905	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_14935	SM00798	AICARFT/IMPCHase bienzyme
ATC04_14935	SM00851	MGS-like domain
ATC04_14955	SM00872	Alpha mannosidase, middle domain
ATC04_15010	SM00257	Lysin motif
ATC04_15065	SM00382	ATPases associated with a variety of cellular activities
ATC04_15075	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_15140	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_15185	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_15210	SM00487	DEAD-like helicases superfamily
ATC04_15210	SM00490	helicase superfamily c-terminal domain
ATC04_15220	SM00881	CoA binding domain
ATC04_15255	SM00507	HNH nucleases
ATC04_15270	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC04_15285	SM00357	Cold shock protein domain
ATC04_15295	SM00448	cheY-homologous receiver domain
ATC04_15295	SM00862	Transcriptional regulatory protein, C terminal
ATC04_15300	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_15300	SM00387	Histidine kinase-like ATPases
ATC04_15300	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_15335	SM00986	Uracil DNA glycosylase superfamily
ATC04_15335	SM00987	UreE urease accessory protein, C-terminal domain 
ATC04_15395	SM00382	ATPases associated with a variety of cellular activities
ATC04_15455	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATC04_15460	SM00840	ATC04_15460
ATC04_15470	SM01058	CarD-like/TRCF domain
ATC04_15480	SM00448	cheY-homologous receiver domain
ATC04_15480	SM00862	Transcriptional regulatory protein, C terminal
ATC04_15485	SM00387	Histidine kinase-like ATPases
ATC04_15485	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_15500	SM00855	Phosphoglycerate mutase family
ATC04_15520	SM00382	ATPases associated with a variety of cellular activities
ATC04_15560	SM00507	HNH nucleases
ATC04_15695	SM00829	Enoylreductase
ATC04_15725	SM00487	DEAD-like helicases superfamily
ATC04_15725	SM00490	helicase superfamily c-terminal domain
ATC04_15785	SM00354	helix_turn _helix lactose operon repressor
ATC04_15840	SM00855	Phosphoglycerate mutase family
ATC04_15845	SM00862	Transcriptional regulatory protein, C terminal
ATC04_15850	SM00448	cheY-homologous receiver domain
ATC04_15850	SM00862	Transcriptional regulatory protein, C terminal
ATC04_15855	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_15855	SM00387	Histidine kinase-like ATPases
ATC04_15855	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_15885	SM01322	ATC04_15885
ATC04_15900	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ATC04_15935	SM00852	Probable molybdopterin binding domain
ATC04_15940	SM00382	ATPases associated with a variety of cellular activities
ATC04_15955	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_15980	SM00450	Rhodanese Homology Domain
ATC04_15990	SM00852	Probable molybdopterin binding domain
ATC04_16000	SM00852	Probable molybdopterin binding domain
ATC04_16030	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_16035	SM00882	Coenzyme A transferase
ATC04_16040	SM00882	Coenzyme A transferase
ATC04_16055	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_16085	SM00998	Adenylosuccinate lyase C-terminus
ATC04_16120	SM00382	ATPases associated with a variety of cellular activities
ATC04_16155	SM00014	Acid phosphatase homologues
ATC04_16165	SM00382	ATPases associated with a variety of cellular activities
ATC04_16165	SM00487	DEAD-like helicases superfamily
ATC04_16165	SM00490	helicase superfamily c-terminal domain
ATC04_16170	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC04_16170	SM01232	ATC04_16170
ATC04_16185	SM00822	ATC04_16185
ATC04_16215	SM00382	ATPases associated with a variety of cellular activities
ATC04_16300	SM00421	helix_turn_helix, Lux Regulon
ATC04_16300	SM00448	cheY-homologous receiver domain
ATC04_16305	SM00382	ATPases associated with a variety of cellular activities
ATC04_16305	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC04_16345	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_16380	SM00855	Phosphoglycerate mutase family
ATC04_16415	SM00448	cheY-homologous receiver domain
ATC04_16415	SM00862	Transcriptional regulatory protein, C terminal
ATC04_16430	SM00507	HNH nucleases
ATC04_16440	SM00382	ATPases associated with a variety of cellular activities
ATC04_16455	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_16475	SM00448	cheY-homologous receiver domain
ATC04_16480	SM00387	Histidine kinase-like ATPases
ATC04_16515	SM00248	ankyrin repeats
ATC04_16530	SM01211	ATC04_16530
ATC04_16610	SM00881	CoA binding domain
ATC04_16625	SM00382	ATPases associated with a variety of cellular activities
ATC04_16690	SM00382	ATPases associated with a variety of cellular activities
ATC04_16695	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_16735	SM00855	Phosphoglycerate mutase family
ATC04_16745	SM00881	CoA binding domain
ATC04_16770	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC04_16770	SM01134	ATC04_16770
ATC04_16820	SM00382	ATPases associated with a variety of cellular activities
ATC04_16835	SM00788	Adenylosuccinate synthetase
ATC04_16885	SM00938	Nitrogen regulatory protein P-II
ATC04_16925	SM00344	helix_turn_helix ASNC type
ATC04_16935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_16935	SM00387	Histidine kinase-like ATPases
ATC04_16935	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_16940	SM00448	cheY-homologous receiver domain
ATC04_16940	SM00862	Transcriptional regulatory protein, C terminal
ATC04_16985	SM00240	Forkhead associated domain
ATC04_16985	SM00382	ATPases associated with a variety of cellular activities
ATC04_16990	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_17025	SM00382	ATPases associated with a variety of cellular activities
ATC04_17075	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_17185	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC04_17245	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_17265	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_17265	SM00895	ATC04_17265
ATC04_17280	SM00450	Rhodanese Homology Domain
ATC04_17280	SM00849	Metallo-beta-lactamase superfamily
ATC04_17285	SM00450	Rhodanese Homology Domain
ATC04_17340	SM00829	Enoylreductase
ATC04_17350	SM00862	Transcriptional regulatory protein, C terminal
ATC04_17355	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_17370	SM00382	ATPases associated with a variety of cellular activities
ATC04_17425	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_17435	SM00382	ATPases associated with a variety of cellular activities
ATC04_17460	SM00382	ATPases associated with a variety of cellular activities
ATC04_17475	SM00478	endonuclease III
ATC04_17475	SM00525	ATC04_17475
ATC04_17510	SM00644	ATC04_17510
ATC04_17680	SM00470	ParB-like nuclease domain
ATC04_17710	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_17730	SM00857	Resolvase, N terminal domain
ATC04_17750	SM00644	ATC04_17750
ATC04_17830	SM00857	Resolvase, N terminal domain
ATC04_17850	SM00450	Rhodanese Homology Domain
ATC04_17855	SM00450	Rhodanese Homology Domain
ATC04_17860	SM00450	Rhodanese Homology Domain
ATC04_17860	SM00849	Metallo-beta-lactamase superfamily
ATC04_17890	SM00857	Resolvase, N terminal domain
ATC04_17895	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_17940	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATC04_18060	SM00387	Histidine kinase-like ATPases
ATC04_18060	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_18065	SM00448	cheY-homologous receiver domain
ATC04_18065	SM00862	Transcriptional regulatory protein, C terminal
ATC04_18070	SM00857	Resolvase, N terminal domain
ATC04_18090	SM00857	Resolvase, N terminal domain
ATC04_18110	SM00974	ATC04_18110
ATC04_18115	SM00487	DEAD-like helicases superfamily
ATC04_18190	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_18220	SM00477	DNA/RNA non-specific endonuclease
ATC04_18220	SM00892	DNA/RNA non-specific endonuclease
ATC04_18265	SM00857	Resolvase, N terminal domain
ATC04_18345	SM01043	Bacterial transcriptional activator domain
ATC04_18350	SM00903	Flavin reductase like domain
ATC04_18470	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_18475	SM00857	Resolvase, N terminal domain
