locus-tag class description APLC1_0037 PF00571 CBS domain APLC1_0037 PF03471 Transporter associated domain APLC1_0037 PF01595 Cyclin M transmembrane N-terminal domain APLC1_0040 PF13439 Glycosyltransferase Family 4 APLC1_0040 PF00534 Glycosyl transferases group 1 APLC1_0041 PF13439 Glycosyltransferase Family 4 APLC1_0041 PF00534 Glycosyl transferases group 1 APLC1_0042 PF00535 Glycosyl transferase family 2 APLC1_0044 PF02390 Putative methyltransferase APLC1_0047 PF02374 Anion-transporting ATPase APLC1_0050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APLC1_0050 PF07685 CobB/CobQ-like glutamine amidotransferase domain APLC1_0056 PF01385 Probable transposase APLC1_0056 PF12323 Helix-turn-helix domain APLC1_0056 PF07282 Putative transposase DNA-binding domain APLC1_0058 PF02225 PA domain APLC1_0058 PF04389 Peptidase family M28 APLC1_0059 PF13847 Methyltransferase domain APLC1_0060 PF00502 Phycobilisome protein APLC1_0060 PF00427 Phycobilisome Linker polypeptide APLC1_0061 PF09335 SNARE associated Golgi protein APLC1_0063 PF01740 STAS domain APLC1_0067 PF17676 LD-carboxypeptidase C-terminal domain APLC1_0067 PF02016 LD-carboxypeptidase N-terminal domain APLC1_0073 PF17746 SfsA N-terminal OB domain APLC1_0073 PF03749 Sugar fermentation stimulation protein RE domain APLC1_0074 PF17746 SfsA N-terminal OB domain APLC1_0074 PF03749 Sugar fermentation stimulation protein RE domain APLC1_0079 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APLC1_0082 PF00128 Alpha amylase, catalytic domain APLC1_0082 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APLC1_0083 PF01171 PP-loop family APLC1_0083 PF09179 TilS substrate binding domain APLC1_0084 PF00535 Glycosyl transferase family 2 APLC1_0087 PF00682 HMGL-like APLC1_0087 PF08502 LeuA allosteric (dimerisation) domain APLC1_0089 PF00072 Response regulator receiver domain APLC1_0089 PF00486 Transcriptional regulatory protein, C terminal APLC1_0091 PF00166 Chaperonin 10 Kd subunit APLC1_0092 PF00118 TCP-1/cpn60 chaperonin family APLC1_0093 PF00421 Photosystem II protein APLC1_0098 PF17863 AAA lid domain APLC1_0098 PF01078 Magnesium chelatase, subunit ChlI APLC1_0099 PF02075 Crossover junction endodeoxyribonuclease RuvC APLC1_0101 PF01327 Polypeptide deformylase APLC1_0102 PF01327 Polypeptide deformylase APLC1_0106 PF07282 Putative transposase DNA-binding domain APLC1_0106 PF01385 Probable transposase APLC1_0106 PF12323 Helix-turn-helix domain APLC1_0108 PF01940 Integral membrane protein DUF92 APLC1_0111 PF03912 Psb28 protein APLC1_0116 PF00005 ABC transporter APLC1_0117 PF02527 rRNA small subunit methyltransferase G APLC1_0119 PF01343 Peptidase family S49 APLC1_0120 PF00892 EamA-like transporter family APLC1_0121 PF00128 Alpha amylase, catalytic domain APLC1_0121 PF11941 Domain of unknown function (DUF3459) APLC1_0122 PF00128 Alpha amylase, catalytic domain APLC1_0123 PF04002 RadC-like JAB domain APLC1_0131 PF17954 Quercetinase C-terminal cupin domain APLC1_0131 PF02678 Pirin APLC1_0132 PF00361 Proton-conducting membrane transporter APLC1_0133 PF00361 Proton-conducting membrane transporter APLC1_0134 PF08003 Protein of unknown function (DUF1698) APLC1_0135 PF13649 Methyltransferase domain APLC1_0136 PF01810 LysE type translocator APLC1_0137 PF04199 Putative cyclase APLC1_0138 PF05175 Methyltransferase small domain APLC1_0141 PF01136 Peptidase family U32 APLC1_0141 PF16325 Peptidase family U32 C-terminal domain APLC1_0143 PF00106 short chain dehydrogenase APLC1_0144 PF00155 Aminotransferase class I and II APLC1_0146 PF00520 Ion transport protein APLC1_0146 PF00027 Cyclic nucleotide-binding domain APLC1_0148 PF13180 PDZ domain APLC1_0150 PF01556 DnaJ C terminal domain APLC1_0150 PF00226 DnaJ domain APLC1_0152 PF00011 Hsp20/alpha crystallin family APLC1_0154 PF01641 SelR domain APLC1_0161 PF03949 Malic enzyme, NAD binding domain APLC1_0161 PF00390 Malic enzyme, N-terminal domain APLC1_0165 PF13439 Glycosyltransferase Family 4 APLC1_0165 PF00534 Glycosyl transferases group 1 APLC1_0168 PF10128 Glucose-6-phosphate dehydrogenase subunit APLC1_0168 PF01471 Putative peptidoglycan binding domain APLC1_0169 PF10128 Glucose-6-phosphate dehydrogenase subunit APLC1_0169 PF01471 Putative peptidoglycan binding domain APLC1_0170 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APLC1_0170 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APLC1_0171 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APLC1_0171 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APLC1_0172 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APLC1_0173 PF12323 Helix-turn-helix domain APLC1_0173 PF01385 Probable transposase APLC1_0173 PF07282 Putative transposase DNA-binding domain APLC1_0177 PF01654 Cytochrome bd terminal oxidase subunit I APLC1_0182 PF00106 short chain dehydrogenase APLC1_0185 PF00270 DEAD/DEAH box helicase APLC1_0185 PF00271 Helicase conserved C-terminal domain APLC1_0185 PF17764 3′ DNA-binding domain (3′BD) APLC1_0185 PF18074 Primosomal protein N C-terminal domain APLC1_0185 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APLC1_0186 PF00271 Helicase conserved C-terminal domain APLC1_0186 PF17764 3′ DNA-binding domain (3′BD) APLC1_0186 PF18074 Primosomal protein N C-terminal domain APLC1_0186 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APLC1_0186 PF00270 DEAD/DEAH box helicase APLC1_0188 PF00483 Nucleotidyl transferase APLC1_0194 PF00128 Alpha amylase, catalytic domain APLC1_0194 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APLC1_0195 PF01259 SAICAR synthetase APLC1_0196 PF01103 Surface antigen APLC1_0196 PF07244 Surface antigen variable number repeat APLC1_0199 PF02541 Ppx/GppA phosphatase family APLC1_0203 PF01590 GAF domain APLC1_0203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0203 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0203 PF08446 PAS fold APLC1_0203 PF00360 Phytochrome region APLC1_0204 PF09308 LuxQ, periplasmic APLC1_0204 PF00072 Response regulator receiver domain APLC1_0204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0204 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0209 PF02514 CobN/Magnesium Chelatase APLC1_0210 PF02514 CobN/Magnesium Chelatase APLC1_0211 PF05552 Conserved TM helix APLC1_0214 PF13369 Transglutaminase-like superfamily APLC1_0215 PF01119 DNA mismatch repair protein, C-terminal domain APLC1_0215 PF08676 MutL C terminal dimerisation domain APLC1_0217 PF02594 Uncharacterised ACR, YggU family COG1872 APLC1_0219 PF01494 FAD binding domain APLC1_0220 PF01252 Signal peptidase (SPase) II APLC1_0221 PF02632 BioY family APLC1_0222 PF06968 Biotin and Thiamin Synthesis associated domain APLC1_0222 PF04055 Radical SAM superfamily APLC1_0223 PF12849 PBP superfamily domain APLC1_0224 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_0225 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_0226 PF00005 ABC transporter APLC1_0228 PF00005 ABC transporter APLC1_0229 PF04485 Phycobilisome degradation protein nblA APLC1_0230 PF09367 CpeS-like protein APLC1_0239 PF01850 PIN domain APLC1_0245 PF12323 Helix-turn-helix domain APLC1_0245 PF01385 Probable transposase APLC1_0245 PF07282 Putative transposase DNA-binding domain APLC1_0251 PF01934 Protein of unknown function DUF86 APLC1_0257 PF01300 Telomere recombination APLC1_0258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0258 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0258 PF18415 Histidine kinase receptor ArcB trans-membrane domain APLC1_0258 PF01627 Hpt domain APLC1_0258 PF00989 PAS fold APLC1_0258 PF00072 Response regulator receiver domain APLC1_0259 PF01040 UbiA prenyltransferase family APLC1_0261 PF17969 L,D-transpeptidase C-terminal domain APLC1_0261 PF03734 L,D-transpeptidase catalytic domain APLC1_0262 PF06298 Photosystem II protein Y (PsbY) APLC1_0263 PF02033 Ribosome-binding factor A APLC1_0264 PF00933 Glycosyl hydrolase family 3 N terminal domain APLC1_0264 PF01915 Glycosyl hydrolase family 3 C-terminal domain APLC1_0266 PF01964 Radical SAM ThiC family APLC1_0271 PF00395 S-layer homology domain APLC1_0271 PF00963 Cohesin domain APLC1_0272 PF03572 Peptidase family S41 APLC1_0272 PF00595 PDZ domain APLC1_0274 PF00072 Response regulator receiver domain APLC1_0274 PF00486 Transcriptional regulatory protein, C terminal APLC1_0275 PF01925 Sulfite exporter TauE/SafE APLC1_0277 PF03069 Acetamidase/Formamidase family APLC1_0277 PF03069 Acetamidase/Formamidase family APLC1_0278 PF00924 Mechanosensitive ion channel APLC1_0278 PF12795 Mechanosensitive ion channel porin domain APLC1_0278 PF12794 Mechanosensitive ion channel inner membrane domain 1 APLC1_0284 PF00936 BMC domain APLC1_0285 PF00936 BMC domain APLC1_0286 PF00152 tRNA synthetases class II (D, K and N) APLC1_0286 PF01336 OB-fold nucleic acid binding domain APLC1_0288 PF01494 FAD binding domain APLC1_0292 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_0296 PF00069 Protein kinase domain APLC1_0296 PF03793 PASTA domain APLC1_0297 PF14602 Hexapeptide repeat of succinyl-transferase APLC1_0297 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal APLC1_0297 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_0306 PF07465 Photosystem I protein M (PsaM) APLC1_0307 PF00334 Nucleoside diphosphate kinase APLC1_0308 PF00005 ABC transporter APLC1_0308 PF03459 TOBE domain APLC1_0312 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_0313 PF00990 Diguanylate cyclase, GGDEF domain APLC1_0313 PF00072 Response regulator receiver domain APLC1_0314 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_0314 PF00072 Response regulator receiver domain APLC1_0314 PF01627 Hpt domain APLC1_0314 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0314 PF00672 HAMP domain APLC1_0314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0315 PF11849 Domain of unknown function (DUF3369) APLC1_0316 PF00989 PAS fold APLC1_0316 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0321 PF00534 Glycosyl transferases group 1 APLC1_0321 PF08323 Starch synthase catalytic domain APLC1_0322 PF00534 Glycosyl transferases group 1 APLC1_0322 PF08323 Starch synthase catalytic domain APLC1_0325 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0325 PF00072 Response regulator receiver domain APLC1_0325 PF01627 Hpt domain APLC1_0325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0326 PF13460 NAD(P)H-binding APLC1_0327 PF01145 SPFH domain / Band 7 family APLC1_0333 PF00578 AhpC/TSA family APLC1_0334 PF04055 Radical SAM superfamily APLC1_0334 PF02310 B12 binding domain APLC1_0334 PF13282 Domain of unknown function (DUF4070) APLC1_0335 PF01791 DeoC/LacD family aldolase APLC1_0336 PF11967 Recombination protein O N terminal APLC1_0336 PF02565 Recombination protein O C terminal APLC1_0337 PF11967 Recombination protein O N terminal APLC1_0337 PF02565 Recombination protein O C terminal APLC1_0338 PF09519 HindVP restriction endonuclease APLC1_0339 PF00145 C-5 cytosine-specific DNA methylase APLC1_0344 PF01008 Initiation factor 2 subunit family APLC1_0345 PF02347 Glycine cleavage system P-protein APLC1_0346 PF02347 Glycine cleavage system P-protein APLC1_0347 PF02347 Glycine cleavage system P-protein APLC1_0350 PF16320 Ribosomal protein L7/L12 dimerisation domain APLC1_0350 PF00542 Ribosomal protein L7/L12 C-terminal domain APLC1_0351 PF00466 Ribosomal protein L10 APLC1_0353 PF00687 Ribosomal protein L1p/L10e family APLC1_0354 PF03946 Ribosomal protein L11, N-terminal domain APLC1_0354 PF00298 Ribosomal protein L11, RNA binding domain APLC1_0355 PF02357 Transcription termination factor nusG APLC1_0355 PF00467 KOW motif APLC1_0356 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APLC1_0358 PF01245 Ribosomal protein L19 APLC1_0359 PF02091 Glycyl-tRNA synthetase alpha subunit APLC1_0365 PF07689 KaiB domain APLC1_0365 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0366 PF00293 NUDIX domain APLC1_0367 PF04539 Sigma-70 region 3 APLC1_0367 PF04542 Sigma-70 region 2 APLC1_0367 PF00140 Sigma-70 factor, region 1.2 APLC1_0367 PF04545 Sigma-70, region 4 APLC1_0369 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_0370 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_0370 PF12911 N-terminal TM domain of oligopeptide transport permease C APLC1_0375 PF01520 N-acetylmuramoyl-L-alanine amidase APLC1_0375 PF01476 LysM domain APLC1_0397 PF00300 Histidine phosphatase superfamily (branch 1) APLC1_0398 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APLC1_0398 PF05221 S-adenosyl-L-homocysteine hydrolase APLC1_0399 PF06055 Exopolysaccharide synthesis, ExoD APLC1_0402 PF01547 Bacterial extracellular solute-binding protein APLC1_0403 PF00156 Phosphoribosyl transferase domain APLC1_0403 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APLC1_0405 PF04055 Radical SAM superfamily APLC1_0406 PF01228 Glycine radical APLC1_0406 PF02901 Pyruvate formate lyase-like APLC1_0407 PF01230 HIT domain APLC1_0411 PF03551 Transcriptional regulator PadR-like family APLC1_0413 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APLC1_0413 PF00529 HlyD membrane-fusion protein of T1SS APLC1_0414 PF00873 AcrB/AcrD/AcrF family APLC1_0415 PF01169 Uncharacterized protein family UPF0016 APLC1_0416 PF02446 4-alpha-glucanotransferase APLC1_0417 PF13464 Domain of unknown function (DUF4115) APLC1_0418 PF00849 RNA pseudouridylate synthase APLC1_0418 PF01479 S4 domain APLC1_0421 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APLC1_0422 PF01276 Orn/Lys/Arg decarboxylase, major domain APLC1_0422 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain APLC1_0423 PF01926 50S ribosome-binding GTPase APLC1_0423 PF06071 Protein of unknown function (DUF933) APLC1_0426 PF01078 Magnesium chelatase, subunit ChlI APLC1_0426 PF13335 Magnesium chelatase, subunit ChlI C-terminal APLC1_0427 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_0427 PF06480 FtsH Extracellular APLC1_0427 PF01434 Peptidase family M41 APLC1_0427 PF17862 AAA+ lid domain APLC1_0429 PF01384 Phosphate transporter family APLC1_0438 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APLC1_0445 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_0466 PF03683 Uncharacterised protein family (UPF0175) APLC1_0473 PF03683 Uncharacterised protein family (UPF0175) APLC1_0481 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system APLC1_0482 PF02463 RecF/RecN/SMC N terminal domain APLC1_0496 PF04230 Polysaccharide pyruvyl transferase APLC1_0504 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APLC1_0505 PF04029 2-phosphosulpholactate phosphatase APLC1_0506 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APLC1_0506 PF02806 Alpha amylase, C-terminal all-beta domain APLC1_0506 PF00128 Alpha amylase, catalytic domain APLC1_0508 PF03793 PASTA domain APLC1_0508 PF03717 Penicillin-binding Protein dimerisation domain APLC1_0508 PF00905 Penicillin binding protein transpeptidase domain APLC1_0509 PF00753 Metallo-beta-lactamase superfamily APLC1_0510 PF00890 FAD binding domain APLC1_0510 PF02910 Fumarate reductase flavoprotein C-term APLC1_0516 PF03738 Glutathionylspermidine synthase preATP-grasp APLC1_0524 PF01544 CorA-like Mg2+ transporter protein APLC1_0525 PF00069 Protein kinase domain APLC1_0527 PF01066 CDP-alcohol phosphatidyltransferase APLC1_0528 PF02743 Cache domain APLC1_0528 PF00672 HAMP domain APLC1_0528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APLC1_0529 PF13188 PAS domain APLC1_0529 PF00989 PAS fold APLC1_0529 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0529 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0530 PF09210 Domain of unknown function (DUF1957) APLC1_0530 PF03065 Glycosyl hydrolase family 57 APLC1_0531 PF03065 Glycosyl hydrolase family 57 APLC1_0531 PF09210 Domain of unknown function (DUF1957) APLC1_0538 PF01960 ArgJ family APLC1_0551 PF00486 Transcriptional regulatory protein, C terminal APLC1_0551 PF00072 Response regulator receiver domain APLC1_0555 PF00805 Pentapeptide repeats (8 copies) APLC1_0555 PF00069 Protein kinase domain APLC1_0558 PF07478 D-ala D-ala ligase C-terminus APLC1_0558 PF01820 D-ala D-ala ligase N-terminus APLC1_0560 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain APLC1_0563 PF00085 Thioredoxin APLC1_0570 PF01850 PIN domain APLC1_0573 PF03683 Uncharacterised protein family (UPF0175) APLC1_0580 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system APLC1_0584 PF03683 Uncharacterised protein family (UPF0175) APLC1_0591 PF01556 DnaJ C terminal domain APLC1_0591 PF00226 DnaJ domain APLC1_0591 PF00684 DnaJ central domain APLC1_0596 PF12137 RNA polymerase recycling family C-terminal APLC1_0596 PF00271 Helicase conserved C-terminal domain APLC1_0596 PF18337 RapA N-terminal Tudor like domain APLC1_0596 PF18339 RapA N-terminal Tudor like domain 1 APLC1_0596 PF00176 SNF2 family N-terminal domain APLC1_0602 PF09369 Domain of unknown function (DUF1998) APLC1_0602 PF00271 Helicase conserved C-terminal domain APLC1_0602 PF00270 DEAD/DEAH box helicase APLC1_0606 PF00580 UvrD/REP helicase N-terminal domain APLC1_0606 PF13361 UvrD-like helicase C-terminal domain APLC1_0608 PF00571 CBS domain APLC1_0609 PF16736 Single Cache-like APLC1_0609 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0609 PF00989 PAS fold APLC1_0609 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0610 PF00483 Nucleotidyl transferase APLC1_0610 PF01050 Mannose-6-phosphate isomerase APLC1_0611 PF01545 Cation efflux family APLC1_0611 PF16916 Dimerisation domain of Zinc Transporter APLC1_0614 PF13614 AAA domain APLC1_0616 PF01578 Cytochrome C assembly protein APLC1_0618 PF01483 Proprotein convertase P-domain APLC1_0618 PF00082 Subtilase family APLC1_0619 PF01483 Proprotein convertase P-domain APLC1_0619 PF00082 Subtilase family APLC1_0621 PF01722 BolA-like protein APLC1_0622 PF00462 Glutaredoxin APLC1_0625 PF00072 Response regulator receiver domain APLC1_0625 PF00486 Transcriptional regulatory protein, C terminal APLC1_0626 PF00171 Aldehyde dehydrogenase family APLC1_0634 PF01627 Hpt domain APLC1_0634 PF00072 Response regulator receiver domain APLC1_0634 PF01584 CheW-like domain APLC1_0634 PF02895 Signal transducing histidine kinase, homodimeric domain APLC1_0634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0635 PF00989 PAS fold APLC1_0635 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0635 PF18698 Histidine kinase sensor domain APLC1_0635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0635 PF00672 HAMP domain APLC1_0636 PF01427 D-ala-D-ala dipeptidase APLC1_0637 PF01427 D-ala-D-ala dipeptidase APLC1_0639 PF06206 CpeT/CpcT family (DUF1001) APLC1_0640 PF01370 NAD dependent epimerase/dehydratase family APLC1_0643 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus APLC1_0643 PF00361 Proton-conducting membrane transporter APLC1_0643 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APLC1_0644 PF00361 Proton-conducting membrane transporter APLC1_0647 PF03631 Virulence factor BrkB APLC1_0649 PF00291 Pyridoxal-phosphate dependent enzyme APLC1_0651 PF00487 Fatty acid desaturase APLC1_0652 PF01565 FAD binding domain APLC1_0652 PF02913 FAD linked oxidases, C-terminal domain APLC1_0653 PF00591 Glycosyl transferase family, a/b domain APLC1_0653 PF02885 Glycosyl transferase family, helical bundle domain APLC1_0654 PF18766 SWI2/SNF2 ATPase APLC1_0654 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APLC1_0654 PF12008 Type I restriction and modification enzyme - subunit R C terminal APLC1_0656 PF02463 RecF/RecN/SMC N terminal domain APLC1_0658 PF12161 HsdM N-terminal domain APLC1_0658 PF02384 N-6 DNA Methylase APLC1_0660 PF13180 PDZ domain APLC1_0661 PF04966 Carbohydrate-selective porin, OprB family APLC1_0661 PF00395 S-layer homology domain APLC1_0662 PF04966 Carbohydrate-selective porin, OprB family APLC1_0662 PF00395 S-layer homology domain APLC1_0663 PF13180 PDZ domain APLC1_0665 PF00072 Response regulator receiver domain APLC1_0665 PF00486 Transcriptional regulatory protein, C terminal APLC1_0665 PF01627 Hpt domain APLC1_0666 PF00486 Transcriptional regulatory protein, C terminal APLC1_0666 PF00072 Response regulator receiver domain APLC1_0666 PF01627 Hpt domain APLC1_0668 PF01747 ATP-sulfurylase APLC1_0668 PF14306 PUA-like domain APLC1_0671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0671 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0671 PF09308 LuxQ, periplasmic APLC1_0671 PF00072 Response regulator receiver domain APLC1_0672 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_0672 PF00672 HAMP domain APLC1_0675 PF00563 EAL domain APLC1_0675 PF00990 Diguanylate cyclase, GGDEF domain APLC1_0675 PF03707 Bacterial signalling protein N terminal repeat APLC1_0676 PF00360 Phytochrome region APLC1_0676 PF01590 GAF domain APLC1_0676 PF00563 EAL domain APLC1_0676 PF00990 Diguanylate cyclase, GGDEF domain APLC1_0677 PF13426 PAS domain APLC1_0677 PF13188 PAS domain APLC1_0677 PF00989 PAS fold APLC1_0677 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0677 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0680 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_0680 PF00672 HAMP domain APLC1_0681 PF02342 TerD domain APLC1_0682 PF02342 TerD domain APLC1_0683 PF01327 Polypeptide deformylase APLC1_0684 PF13180 PDZ domain APLC1_0685 PF00308 Bacterial dnaA protein APLC1_0685 PF11638 DnaA N-terminal domain APLC1_0685 PF08299 Bacterial dnaA protein helix-turn-helix APLC1_0686 PF00271 Helicase conserved C-terminal domain APLC1_0686 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APLC1_0686 PF04851 Type III restriction enzyme, res subunit APLC1_0686 PF08463 EcoEI R protein C-terminal APLC1_0687 PF01420 Type I restriction modification DNA specificity domain APLC1_0690 PF12161 HsdM N-terminal domain APLC1_0690 PF02384 N-6 DNA Methylase APLC1_0701 PF00712 DNA polymerase III beta subunit, N-terminal domain APLC1_0701 PF02767 DNA polymerase III beta subunit, central domain APLC1_0701 PF02768 DNA polymerase III beta subunit, C-terminal domain APLC1_0702 PF00712 DNA polymerase III beta subunit, N-terminal domain APLC1_0702 PF02768 DNA polymerase III beta subunit, C-terminal domain APLC1_0702 PF02767 DNA polymerase III beta subunit, central domain APLC1_0704 PF11016 Protein of unknown function (DUF2854) APLC1_0706 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APLC1_0706 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APLC1_0707 PF04452 RNA methyltransferase APLC1_0708 PF04452 RNA methyltransferase APLC1_0709 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APLC1_0709 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APLC1_0714 PF13358 DDE superfamily endonuclease APLC1_0719 PF01521 Iron-sulphur cluster biosynthesis APLC1_0722 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APLC1_0722 PF02222 ATP-grasp domain APLC1_0724 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APLC1_0724 PF00953 Glycosyl transferase family 4 APLC1_0726 PF00005 ABC transporter APLC1_0729 PF01208 Uroporphyrinogen decarboxylase (URO-D) APLC1_0731 PF00266 Aminotransferase class-V APLC1_0734 PF01106 NifU-like domain APLC1_0735 PF01627 Hpt domain APLC1_0735 PF00072 Response regulator receiver domain APLC1_0735 PF00486 Transcriptional regulatory protein, C terminal APLC1_0736 PF13426 PAS domain APLC1_0736 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0736 PF00672 HAMP domain APLC1_0737 PF00072 Response regulator receiver domain APLC1_0737 PF00486 Transcriptional regulatory protein, C terminal APLC1_0738 PF00990 Diguanylate cyclase, GGDEF domain APLC1_0738 PF00072 Response regulator receiver domain APLC1_0744 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APLC1_0744 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APLC1_0744 PF03129 Anticodon binding domain APLC1_0748 PF08241 Methyltransferase domain APLC1_0749 PF08241 Methyltransferase domain APLC1_0753 PF08267 Cobalamin-independent synthase, N-terminal domain APLC1_0753 PF01717 Cobalamin-independent synthase, Catalytic domain APLC1_0759 PF12323 Helix-turn-helix domain APLC1_0759 PF07282 Putative transposase DNA-binding domain APLC1_0759 PF01385 Probable transposase APLC1_0765 PF01098 Cell cycle protein APLC1_0766 PF13188 PAS domain APLC1_0766 PF08448 PAS fold APLC1_0766 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0766 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0766 PF00072 Response regulator receiver domain APLC1_0768 PF00156 Phosphoribosyl transferase domain APLC1_0770 PF00595 PDZ domain APLC1_0770 PF03572 Peptidase family S41 APLC1_0771 PF04551 GcpE protein APLC1_0772 PF12146 Serine aminopeptidase, S33 APLC1_0777 PF00588 SpoU rRNA Methylase family APLC1_0778 PF01112 Asparaginase APLC1_0779 PF00072 Response regulator receiver domain APLC1_0779 PF00486 Transcriptional regulatory protein, C terminal APLC1_0780 PF01584 CheW-like domain APLC1_0780 PF02895 Signal transducing histidine kinase, homodimeric domain APLC1_0780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0780 PF01627 Hpt domain APLC1_0780 PF07194 P2 response regulator binding domain APLC1_0781 PF01584 CheW-like domain APLC1_0782 PF00672 HAMP domain APLC1_0782 PF16591 Helical bimodular sensor domain APLC1_0782 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APLC1_0784 PF01739 CheR methyltransferase, SAM binding domain APLC1_0784 PF03705 CheR methyltransferase, all-alpha domain APLC1_0785 PF00072 Response regulator receiver domain APLC1_0785 PF01339 CheB methylesterase APLC1_0788 PF09194 Restriction endonuclease BsobI APLC1_0789 PF09194 Restriction endonuclease BsobI APLC1_0791 PF05140 ResB-like family APLC1_0793 PF00672 HAMP domain APLC1_0793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_0793 PF18698 Histidine kinase sensor domain APLC1_0793 PF00512 His Kinase A (phospho-acceptor) domain APLC1_0794 PF00672 HAMP domain APLC1_0794 PF07228 Stage II sporulation protein E (SpoIIE) APLC1_0796 PF03717 Penicillin-binding Protein dimerisation domain APLC1_0796 PF00905 Penicillin binding protein transpeptidase domain APLC1_0797 PF03717 Penicillin-binding Protein dimerisation domain APLC1_0797 PF00905 Penicillin binding protein transpeptidase domain APLC1_0800 PF00919 Uncharacterized protein family UPF0004 APLC1_0800 PF01938 TRAM domain APLC1_0800 PF04055 Radical SAM superfamily APLC1_0804 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_0804 PF01348 Type II intron maturase APLC1_0807 PF02419 PsbL protein APLC1_0808 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits APLC1_0809 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit APLC1_0809 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits APLC1_0810 PF14870 Photosynthesis system II assembly factor YCF48 APLC1_0811 PF00301 Rubredoxin APLC1_0813 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APLC1_0814 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APLC1_0815 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APLC1_0817 PF00675 Insulinase (Peptidase family M16) APLC1_0817 PF05193 Peptidase M16 inactive domain APLC1_0818 PF00586 AIR synthase related protein, N-terminal domain APLC1_0818 PF02769 AIR synthase related protein, C-terminal domain APLC1_0818 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APLC1_0819 PF00586 AIR synthase related protein, N-terminal domain APLC1_0819 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APLC1_0819 PF02769 AIR synthase related protein, C-terminal domain APLC1_0820 PF00586 AIR synthase related protein, N-terminal domain APLC1_0820 PF02769 AIR synthase related protein, C-terminal domain APLC1_0820 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APLC1_0821 PF00156 Phosphoribosyl transferase domain APLC1_0822 PF00795 Carbon-nitrogen hydrolase APLC1_0823 PF00437 Type II/IV secretion system protein APLC1_0824 PF07689 KaiB domain APLC1_0826 PF00231 ATP synthase APLC1_0827 PF00306 ATP synthase alpha/beta chain, C terminal domain APLC1_0827 PF02874 ATP synthase alpha/beta family, beta-barrel domain APLC1_0827 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APLC1_0828 PF00213 ATP synthase delta (OSCP) subunit APLC1_0829 PF00430 ATP synthase B/B' CF(0) APLC1_0830 PF00430 ATP synthase B/B' CF(0) APLC1_0831 PF00137 ATP synthase subunit C APLC1_0832 PF00119 ATP synthase A chain APLC1_0833 PF12966 N-ATPase, AtpR subunit APLC1_0834 PF04073 Aminoacyl-tRNA editing domain APLC1_0834 PF03129 Anticodon binding domain APLC1_0834 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APLC1_0835 PF10531 SLBB domain APLC1_0838 PF00266 Aminotransferase class-V APLC1_0839 PF00155 Aminotransferase class I and II APLC1_0840 PF01965 DJ-1/PfpI family APLC1_0841 PF02540 NAD synthase APLC1_0841 PF00795 Carbon-nitrogen hydrolase APLC1_0852 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system APLC1_0857 PF05685 Putative restriction endonuclease APLC1_0858 PF05685 Putative restriction endonuclease APLC1_0861 PF00350 Dynamin family APLC1_0871 PF01420 Type I restriction modification DNA specificity domain APLC1_0886 PF00140 Sigma-70 factor, region 1.2 APLC1_0886 PF04542 Sigma-70 region 2 APLC1_0886 PF04539 Sigma-70 region 3 APLC1_0886 PF04545 Sigma-70, region 4 APLC1_0887 PF00140 Sigma-70 factor, region 1.2 APLC1_0887 PF04542 Sigma-70 region 2 APLC1_0887 PF04545 Sigma-70, region 4 APLC1_0887 PF04539 Sigma-70 region 3 APLC1_0888 PF01475 Ferric uptake regulator family APLC1_0919 PF01520 N-acetylmuramoyl-L-alanine amidase APLC1_0919 PF01471 Putative peptidoglycan binding domain APLC1_0923 PF10518 TAT (twin-arginine translocation) pathway signal sequence APLC1_0923 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APLC1_0924 PF00111 2Fe-2S iron-sulfur cluster binding domain APLC1_0925 PF08486 Stage II sporulation protein APLC1_0926 PF07282 Putative transposase DNA-binding domain APLC1_0926 PF01385 Probable transposase APLC1_0926 PF12323 Helix-turn-helix domain APLC1_0931 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APLC1_0931 PF02896 PEP-utilising enzyme, TIM barrel domain APLC1_0931 PF00391 PEP-utilising enzyme, mobile domain APLC1_0935 PF00480 ROK family APLC1_0939 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APLC1_0939 PF02142 MGS-like domain APLC1_0939 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APLC1_0941 PF00145 C-5 cytosine-specific DNA methylase APLC1_0947 PF01758 Sodium Bile acid symporter family APLC1_0948 PF03358 NADPH-dependent FMN reductase APLC1_0949 PF03358 NADPH-dependent FMN reductase APLC1_0950 PF01451 Low molecular weight phosphotyrosine protein phosphatase APLC1_0954 PF05670 NFACT protein RNA binding domain APLC1_0958 PF08369 Proto-chlorophyllide reductase 57 kD subunit APLC1_0958 PF00148 Nitrogenase component 1 type Oxidoreductase APLC1_0959 PF00563 EAL domain APLC1_0959 PF00360 Phytochrome region APLC1_0959 PF00990 Diguanylate cyclase, GGDEF domain APLC1_0959 PF01590 GAF domain APLC1_0961 PF07282 Putative transposase DNA-binding domain APLC1_0961 PF01385 Probable transposase APLC1_0961 PF12323 Helix-turn-helix domain APLC1_0969 PF07688 KaiA C-terminal domain APLC1_0970 PF07689 KaiB domain APLC1_0971 PF06745 KaiC APLC1_0983 PF01016 Ribosomal L27 protein APLC1_0989 PF00829 Ribosomal prokaryotic L21 protein APLC1_1000 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APLC1_1000 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APLC1_1001 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APLC1_1001 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APLC1_1005 PF00226 DnaJ domain APLC1_1005 PF01556 DnaJ C terminal domain APLC1_1005 PF00684 DnaJ central domain APLC1_1013 PF00124 Photosynthetic reaction centre protein APLC1_1017 PF05685 Putative restriction endonuclease APLC1_1018 PF00124 Photosynthetic reaction centre protein APLC1_1019 PF04055 Radical SAM superfamily APLC1_1022 PF05729 NACHT domain APLC1_1022 PF00805 Pentapeptide repeats (8 copies) APLC1_1022 PF00400 WD domain, G-beta repeat APLC1_1023 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APLC1_1027 PF00158 Sigma-54 interaction domain APLC1_1027 PF00072 Response regulator receiver domain APLC1_1027 PF02954 Bacterial regulatory protein, Fis family APLC1_1028 PF01209 ubiE/COQ5 methyltransferase family APLC1_1029 PF04286 Protein of unknown function (DUF445) APLC1_1030 PF01773 Na+ dependent nucleoside transporter N-terminus APLC1_1030 PF07670 Nucleoside recognition APLC1_1030 PF07662 Na+ dependent nucleoside transporter C-terminus APLC1_1031 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APLC1_1031 PF01926 50S ribosome-binding GTPase APLC1_1032 PF02361 Cobalt transport protein APLC1_1034 PF01168 Alanine racemase, N-terminal domain APLC1_1035 PF12323 Helix-turn-helix domain APLC1_1035 PF07282 Putative transposase DNA-binding domain APLC1_1035 PF01385 Probable transposase APLC1_1036 PF04472 Cell division protein SepF APLC1_1037 PF03807 NADP oxidoreductase coenzyme F420-dependent APLC1_1037 PF14748 Pyrroline-5-carboxylate reductase dimerisation APLC1_1038 PF02660 Glycerol-3-phosphate acyltransferase APLC1_1040 PF01385 Probable transposase APLC1_1040 PF12323 Helix-turn-helix domain APLC1_1040 PF07282 Putative transposase DNA-binding domain APLC1_1043 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APLC1_1043 PF02779 Transketolase, pyrimidine binding domain APLC1_1043 PF02780 Transketolase, C-terminal domain APLC1_1044 PF00535 Glycosyl transferase family 2 APLC1_1046 PF00294 pfkB family carbohydrate kinase APLC1_1046 PF01467 Cytidylyltransferase-like APLC1_1048 PF16416 ARM-like repeat domain, GUN4-N terminal APLC1_1048 PF05419 GUN4-like APLC1_1053 PF03958 Bacterial type II/III secretion system short domain APLC1_1053 PF00263 Bacterial type II and III secretion system protein APLC1_1054 PF00216 Bacterial DNA-binding protein APLC1_1055 PF00155 Aminotransferase class I and II APLC1_1057 PF12826 Helix-hairpin-helix motif APLC1_1057 PF02151 UvrB/uvrC motif APLC1_1057 PF08459 UvrC Helix-hairpin-helix N-terminal APLC1_1057 PF01541 GIY-YIG catalytic domain APLC1_1058 PF00067 Cytochrome P450 APLC1_1060 PF03033 Glycosyltransferase family 28 N-terminal domain APLC1_1060 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase APLC1_1064 PF00348 Polyprenyl synthetase APLC1_1066 PF01266 FAD dependent oxidoreductase APLC1_1067 PF00672 HAMP domain APLC1_1067 PF00909 Ammonium Transporter Family APLC1_1068 PF00672 HAMP domain APLC1_1068 PF00909 Ammonium Transporter Family APLC1_1072 PF01435 Peptidase family M48 APLC1_1073 PF04011 LemA family APLC1_1076 PF00155 Aminotransferase class I and II APLC1_1080 PF18073 Rubredoxin metal binding domain APLC1_1080 PF06745 KaiC APLC1_1081 PF00072 Response regulator receiver domain APLC1_1081 PF00486 Transcriptional regulatory protein, C terminal APLC1_1087 PF01769 Divalent cation transporter APLC1_1087 PF03448 MgtE intracellular N domain APLC1_1087 PF00571 CBS domain APLC1_1088 PF01018 GTP1/OBG APLC1_1088 PF01926 50S ribosome-binding GTPase APLC1_1090 PF00931 NB-ARC domain APLC1_1090 PF00400 WD domain, G-beta repeat APLC1_1095 PF17862 AAA+ lid domain APLC1_1095 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_1095 PF01434 Peptidase family M41 APLC1_1098 PF14572 Phosphoribosyl synthetase-associated domain APLC1_1098 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APLC1_1099 PF00069 Protein kinase domain APLC1_1104 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1104 PF01348 Type II intron maturase APLC1_1105 PF00873 AcrB/AcrD/AcrF family APLC1_1112 PF17810 Arginine decarboxylase helical bundle domain APLC1_1112 PF17944 Arginine decarboxylase C-terminal helical extension APLC1_1112 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APLC1_1113 PF00483 Nucleotidyl transferase APLC1_1114 PF02446 4-alpha-glucanotransferase APLC1_1116 PF02446 4-alpha-glucanotransferase APLC1_1120 PF03808 Glycosyl transferase WecB/TagA/CpsF family APLC1_1122 PF00069 Protein kinase domain APLC1_1122 PF00805 Pentapeptide repeats (8 copies) APLC1_1123 PF03079 ARD/ARD' family APLC1_1127 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_1128 PF00072 Response regulator receiver domain APLC1_1129 PF00196 Bacterial regulatory proteins, luxR family APLC1_1129 PF00072 Response regulator receiver domain APLC1_1130 PF00072 Response regulator receiver domain APLC1_1130 PF00990 Diguanylate cyclase, GGDEF domain APLC1_1131 PF01336 OB-fold nucleic acid binding domain APLC1_1131 PF00152 tRNA synthetases class II (D, K and N) APLC1_1131 PF02938 GAD domain APLC1_1138 PF02540 NAD synthase APLC1_1138 PF00958 GMP synthase C terminal domain APLC1_1138 PF00117 Glutamine amidotransferase class-I APLC1_1151 PF07669 Eco57I restriction-modification methylase APLC1_1163 PF00266 Aminotransferase class-V APLC1_1166 PF00266 Aminotransferase class-V APLC1_1169 PF06508 Queuosine biosynthesis protein QueC APLC1_1170 PF06508 Queuosine biosynthesis protein QueC APLC1_1171 PF00902 Sec-independent protein translocase protein (TatC) APLC1_1175 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_1175 PF01434 Peptidase family M41 APLC1_1175 PF06480 FtsH Extracellular APLC1_1175 PF17862 AAA+ lid domain APLC1_1178 PF00535 Glycosyl transferase family 2 APLC1_1180 PF00145 C-5 cytosine-specific DNA methylase APLC1_1181 PF02350 UDP-N-acetylglucosamine 2-epimerase APLC1_1182 PF00990 Diguanylate cyclase, GGDEF domain APLC1_1182 PF01590 GAF domain APLC1_1182 PF00563 EAL domain APLC1_1182 PF00360 Phytochrome region APLC1_1183 PF00849 RNA pseudouridylate synthase APLC1_1187 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1187 PF01348 Type II intron maturase APLC1_1189 PF08245 Mur ligase middle domain APLC1_1189 PF02875 Mur ligase family, glutamate ligase domain APLC1_1191 PF00936 BMC domain APLC1_1193 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_1193 PF00101 Ribulose bisphosphate carboxylase, small chain APLC1_1194 PF03319 Ethanolamine utilisation protein EutN/carboxysome APLC1_1195 PF00936 BMC domain APLC1_1196 PF00936 BMC domain APLC1_1197 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APLC1_1197 PF00361 Proton-conducting membrane transporter APLC1_1197 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus APLC1_1198 PF00361 Proton-conducting membrane transporter APLC1_1198 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APLC1_1198 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus APLC1_1199 PF00361 Proton-conducting membrane transporter APLC1_1201 PF00664 ABC transporter transmembrane region APLC1_1201 PF00005 ABC transporter APLC1_1205 PF02675 S-adenosylmethionine decarboxylase APLC1_1206 PF02086 D12 class N6 adenine-specific DNA methyltransferase APLC1_1208 PF00005 ABC transporter APLC1_1208 PF08402 TOBE domain APLC1_1209 PF13416 Bacterial extracellular solute-binding protein APLC1_1210 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_1211 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_1212 PF01687 Riboflavin kinase APLC1_1212 PF06574 FAD synthetase APLC1_1220 PF17863 AAA lid domain APLC1_1220 PF07726 ATPase family associated with various cellular activities (AAA) APLC1_1222 PF02082 Transcriptional regulator APLC1_1223 PF03186 CobD/Cbib protein APLC1_1224 PF00156 Phosphoribosyl transferase domain APLC1_1225 PF01070 FMN-dependent dehydrogenase APLC1_1226 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APLC1_1228 PF10017 Histidine-specific methyltransferase, SAM-dependent APLC1_1229 PF00830 Ribosomal L28 family APLC1_1231 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1231 PF01348 Type II intron maturase APLC1_1235 PF01131 DNA topoisomerase APLC1_1235 PF01751 Toprim domain APLC1_1235 PF13368 Topoisomerase C-terminal repeat APLC1_1237 PF05193 Peptidase M16 inactive domain APLC1_1237 PF00675 Insulinase (Peptidase family M16) APLC1_1240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1240 PF01348 Type II intron maturase APLC1_1241 PF03649 Uncharacterised protein family (UPF0014) APLC1_1242 PF00005 ABC transporter APLC1_1242 PF09383 NIL domain APLC1_1244 PF00563 EAL domain APLC1_1244 PF00990 Diguanylate cyclase, GGDEF domain APLC1_1244 PF03707 Bacterial signalling protein N terminal repeat APLC1_1249 PF00204 DNA gyrase B APLC1_1249 PF00986 DNA gyrase B subunit, carboxyl terminus APLC1_1249 PF01751 Toprim domain APLC1_1249 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1253 PF07724 AAA domain (Cdc48 subfamily) APLC1_1253 PF10431 C-terminal, D2-small domain, of ClpB protein APLC1_1253 PF06689 ClpX C4-type zinc finger APLC1_1254 PF00574 Clp protease APLC1_1255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APLC1_1255 PF05698 Bacterial trigger factor protein (TF) C-terminus APLC1_1255 PF05697 Bacterial trigger factor protein (TF) APLC1_1256 PF01118 Semialdehyde dehydrogenase, NAD binding domain APLC1_1256 PF02774 Semialdehyde dehydrogenase, dimerisation domain APLC1_1257 PF00701 Dihydrodipicolinate synthetase family APLC1_1258 PF00753 Metallo-beta-lactamase superfamily APLC1_1258 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APLC1_1258 PF17770 Ribonuclease J C-terminal domain APLC1_1259 PF00989 PAS fold APLC1_1259 PF00158 Sigma-54 interaction domain APLC1_1259 PF02954 Bacterial regulatory protein, Fis family APLC1_1261 PF13378 Enolase C-terminal domain-like APLC1_1263 PF13614 AAA domain APLC1_1264 PF12697 Alpha/beta hydrolase family APLC1_1265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1265 PF08447 PAS fold APLC1_1265 PF08448 PAS fold APLC1_1266 PF00563 EAL domain APLC1_1266 PF00990 Diguanylate cyclase, GGDEF domain APLC1_1266 PF03707 Bacterial signalling protein N terminal repeat APLC1_1266 PF13188 PAS domain APLC1_1285 PF00571 CBS domain APLC1_1285 PF01769 Divalent cation transporter APLC1_1285 PF03448 MgtE intracellular N domain APLC1_1286 PF00571 CBS domain APLC1_1286 PF01769 Divalent cation transporter APLC1_1286 PF03448 MgtE intracellular N domain APLC1_1295 PF00575 S1 RNA binding domain APLC1_1295 PF00013 KH domain APLC1_1295 PF01138 3' exoribonuclease family, domain 1 APLC1_1295 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APLC1_1295 PF03725 3' exoribonuclease family, domain 2 APLC1_1297 PF00271 Helicase conserved C-terminal domain APLC1_1297 PF00176 SNF2 family N-terminal domain APLC1_1297 PF12419 SNF2 Helicase protein APLC1_1298 PF00108 Thiolase, N-terminal domain APLC1_1298 PF02803 Thiolase, C-terminal domain APLC1_1301 PF00502 Phycobilisome protein APLC1_1302 PF01938 TRAM domain APLC1_1302 PF13847 Methyltransferase domain APLC1_1304 PF05690 Thiazole biosynthesis protein ThiG APLC1_1304 PF01266 FAD dependent oxidoreductase APLC1_1309 PF07664 Ferrous iron transport protein B C terminus APLC1_1309 PF17910 FeoB cytosolic helical domain APLC1_1309 PF02421 Ferrous iron transport protein B APLC1_1309 PF07670 Nucleoside recognition APLC1_1310 PF07670 Nucleoside recognition APLC1_1310 PF02421 Ferrous iron transport protein B APLC1_1310 PF07664 Ferrous iron transport protein B C terminus APLC1_1314 PF03461 TRCF domain APLC1_1314 PF02559 CarD-like/TRCF domain APLC1_1314 PF00270 DEAD/DEAH box helicase APLC1_1314 PF00271 Helicase conserved C-terminal domain APLC1_1314 PF17757 UvrB interaction domain APLC1_1315 PF00005 ABC transporter APLC1_1316 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase APLC1_1316 PF00749 tRNA synthetases class I (E and Q), catalytic domain APLC1_1318 PF00805 Pentapeptide repeats (8 copies) APLC1_1318 PF00069 Protein kinase domain APLC1_1319 PF00107 Zinc-binding dehydrogenase APLC1_1319 PF08240 Alcohol dehydrogenase GroES-like domain APLC1_1320 PF00171 Aldehyde dehydrogenase family APLC1_1320 PF00465 Iron-containing alcohol dehydrogenase APLC1_1321 PF00465 Iron-containing alcohol dehydrogenase APLC1_1321 PF00171 Aldehyde dehydrogenase family APLC1_1323 PF00326 Prolyl oligopeptidase family APLC1_1325 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_1325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APLC1_1329 PF00690 Cation transporter/ATPase, N-terminus APLC1_1329 PF00689 Cation transporting ATPase, C-terminus APLC1_1330 PF00690 Cation transporter/ATPase, N-terminus APLC1_1330 PF00689 Cation transporting ATPase, C-terminus APLC1_1331 PF00581 Rhodanese-like domain APLC1_1332 PF00805 Pentapeptide repeats (8 copies) APLC1_1333 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV APLC1_1335 PF02574 Homocysteine S-methyltransferase APLC1_1335 PF02310 B12 binding domain APLC1_1335 PF02607 B12 binding domain APLC1_1335 PF02965 Vitamin B12 dependent methionine synthase, activation domain APLC1_1335 PF00809 Pterin binding enzyme APLC1_1336 PF17284 Spermidine synthase tetramerisation domain APLC1_1337 PF00696 Amino acid kinase family APLC1_1337 PF01472 PUA domain APLC1_1339 PF02618 YceG-like family APLC1_1340 PF06949 Protein of unknown function (DUF1292) APLC1_1341 PF03652 Holliday junction resolvase APLC1_1350 PF07282 Putative transposase DNA-binding domain APLC1_1350 PF01385 Probable transposase APLC1_1350 PF12323 Helix-turn-helix domain APLC1_1355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APLC1_1355 PF03466 LysR substrate binding domain APLC1_1356 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain APLC1_1356 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain APLC1_1357 PF02341 RbcX protein APLC1_1358 PF00101 Ribulose bisphosphate carboxylase, small chain APLC1_1363 PF05195 Aminopeptidase P, N-terminal domain APLC1_1363 PF00557 Metallopeptidase family M24 APLC1_1364 PF17862 AAA+ lid domain APLC1_1364 PF06480 FtsH Extracellular APLC1_1364 PF01434 Peptidase family M41 APLC1_1364 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_1368 PF01648 4'-phosphopantetheinyl transferase superfamily APLC1_1369 PF13614 AAA domain APLC1_1373 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APLC1_1374 PF06271 RDD family APLC1_1380 PF00069 Protein kinase domain APLC1_1380 PF00805 Pentapeptide repeats (8 copies) APLC1_1389 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APLC1_1389 PF01842 ACT domain APLC1_1389 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APLC1_1391 PF04143 Sulphur transport APLC1_1393 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_1402 PF01850 PIN domain APLC1_1406 PF01934 Protein of unknown function DUF86 APLC1_1418 PF07015 VirC1 protein APLC1_1430 PF00563 EAL domain APLC1_1430 PF00990 Diguanylate cyclase, GGDEF domain APLC1_1430 PF08448 PAS fold APLC1_1431 PF01435 Peptidase family M48 APLC1_1431 PF13181 Tetratricopeptide repeat APLC1_1432 PF00072 Response regulator receiver domain APLC1_1433 PF08446 PAS fold APLC1_1433 PF00360 Phytochrome region APLC1_1433 PF01590 GAF domain APLC1_1433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1433 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1434 PF00360 Phytochrome region APLC1_1434 PF08446 PAS fold APLC1_1434 PF01590 GAF domain APLC1_1434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1434 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1435 PF00072 Response regulator receiver domain APLC1_1435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1435 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1435 PF09308 LuxQ, periplasmic APLC1_1436 PF00899 ThiF family APLC1_1436 PF00581 Rhodanese-like domain APLC1_1438 PF03190 Protein of unknown function, DUF255 APLC1_1439 PF01926 50S ribosome-binding GTPase APLC1_1439 PF07650 KH domain APLC1_1440 PF00561 alpha/beta hydrolase fold APLC1_1440 PF08386 TAP-like protein APLC1_1442 PF01725 Ham1 family APLC1_1443 PF01725 Ham1 family APLC1_1444 PF00543 Nitrogen regulatory protein P-II APLC1_1445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APLC1_1445 PF00205 Thiamine pyrophosphate enzyme, central domain APLC1_1445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APLC1_1447 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APLC1_1447 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APLC1_1447 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APLC1_1447 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APLC1_1450 PF00534 Glycosyl transferases group 1 APLC1_1450 PF13439 Glycosyltransferase Family 4 APLC1_1451 PF00583 Acetyltransferase (GNAT) family APLC1_1459 PF01348 Type II intron maturase APLC1_1459 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1468 PF00583 Acetyltransferase (GNAT) family APLC1_1481 PF01348 Type II intron maturase APLC1_1481 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1486 PF04055 Radical SAM superfamily APLC1_1497 PF02384 N-6 DNA Methylase APLC1_1497 PF12161 HsdM N-terminal domain APLC1_1500 PF01420 Type I restriction modification DNA specificity domain APLC1_1501 PF01381 Helix-turn-helix APLC1_1502 PF18766 SWI2/SNF2 ATPase APLC1_1502 PF12008 Type I restriction and modification enzyme - subunit R C terminal APLC1_1502 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APLC1_1534 PF00498 FHA domain APLC1_1534 PF12773 Double zinc ribbon APLC1_1535 PF00498 FHA domain APLC1_1535 PF12773 Double zinc ribbon APLC1_1536 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APLC1_1538 PF00005 ABC transporter APLC1_1538 PF00498 FHA domain APLC1_1538 PF01061 ABC-2 type transporter APLC1_1539 PF02463 RecF/RecN/SMC N terminal domain APLC1_1542 PF01241 Photosystem I psaG / psaK APLC1_1543 PF08241 Methyltransferase domain APLC1_1544 PF00762 Ferrochelatase APLC1_1545 PF05194 UreE urease accessory protein, C-terminal domain APLC1_1545 PF02814 UreE urease accessory protein, N-terminal domain APLC1_1546 PF01730 UreF APLC1_1547 PF00535 Glycosyl transferase family 2 APLC1_1548 PF02605 Photosystem I reaction centre subunit XI APLC1_1549 PF00796 Photosystem I reaction centre subunit VIII APLC1_1552 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APLC1_1552 PF01266 FAD dependent oxidoreductase APLC1_1553 PF00483 Nucleotidyl transferase APLC1_1553 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_1555 PF01555 DNA methylase APLC1_1559 PF00400 WD domain, G-beta repeat APLC1_1560 PF00664 ABC transporter transmembrane region APLC1_1560 PF00005 ABC transporter APLC1_1573 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APLC1_1578 PF13735 tRNA nucleotidyltransferase domain 2 putative APLC1_1578 PF12627 Probable RNA and SrmB- binding site of polymerase A APLC1_1578 PF01743 Poly A polymerase head domain APLC1_1579 PF00101 Ribulose bisphosphate carboxylase, small chain APLC1_1579 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_1585 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APLC1_1585 PF03900 Porphobilinogen deaminase, C-terminal domain APLC1_1594 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APLC1_1594 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APLC1_1595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APLC1_1595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APLC1_1599 PF00912 Transglycosylase APLC1_1599 PF00905 Penicillin binding protein transpeptidase domain APLC1_1604 PF00672 HAMP domain APLC1_1604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1604 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1604 PF01627 Hpt domain APLC1_1604 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_1604 PF00072 Response regulator receiver domain APLC1_1606 PF13193 AMP-binding enzyme C-terminal domain APLC1_1606 PF00501 AMP-binding enzyme APLC1_1606 PF16177 Acetyl-coenzyme A synthetase N-terminus APLC1_1607 PF13193 AMP-binding enzyme C-terminal domain APLC1_1607 PF16177 Acetyl-coenzyme A synthetase N-terminus APLC1_1607 PF00501 AMP-binding enzyme APLC1_1608 PF12323 Helix-turn-helix domain APLC1_1608 PF07282 Putative transposase DNA-binding domain APLC1_1608 PF01385 Probable transposase APLC1_1609 PF00535 Glycosyl transferase family 2 APLC1_1614 PF06750 Bacterial Peptidase A24 N-terminal domain APLC1_1614 PF01478 Type IV leader peptidase family APLC1_1616 PF01039 Carboxyl transferase domain APLC1_1616 PF17848 Acetyl-coA carboxylase zinc finger domain APLC1_1618 PF14495 Cytochrome c-550 domain APLC1_1619 PF14495 Cytochrome c-550 domain APLC1_1620 PF00672 HAMP domain APLC1_1620 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_1622 PF02602 Uroporphyrinogen-III synthase HemD APLC1_1625 PF04471 Restriction endonuclease APLC1_1625 PF14338 Mrr N-terminal domain APLC1_1626 PF00226 DnaJ domain APLC1_1626 PF01556 DnaJ C terminal domain APLC1_1626 PF00684 DnaJ central domain APLC1_1628 PF00310 Glutamine amidotransferases class-II APLC1_1628 PF04898 Glutamate synthase central domain APLC1_1628 PF01645 Conserved region in glutamate synthase APLC1_1628 PF01493 GXGXG motif APLC1_1631 PF00483 Nucleotidyl transferase APLC1_1631 PF01050 Mannose-6-phosphate isomerase APLC1_1632 PF01521 Iron-sulphur cluster biosynthesis APLC1_1633 PF00164 Ribosomal protein S12/S23 APLC1_1634 PF00177 Ribosomal protein S7p/S5e APLC1_1635 PF00009 Elongation factor Tu GTP binding domain APLC1_1635 PF03764 Elongation factor G, domain IV APLC1_1635 PF00679 Elongation factor G C-terminus APLC1_1635 PF03144 Elongation factor Tu domain 2 APLC1_1635 PF14492 Elongation Factor G, domain II APLC1_1636 PF03143 Elongation factor Tu C-terminal domain APLC1_1636 PF03144 Elongation factor Tu domain 2 APLC1_1636 PF00009 Elongation factor Tu GTP binding domain APLC1_1637 PF00338 Ribosomal protein S10p/S20e APLC1_1638 PF02190 ATP-dependent protease La (LON) substrate-binding domain APLC1_1638 PF05362 Lon protease (S16) C-terminal proteolytic domain APLC1_1638 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_1641 PF00800 Prephenate dehydratase APLC1_1641 PF01817 Chorismate mutase type II APLC1_1641 PF01842 ACT domain APLC1_1643 PF01351 Ribonuclease HII APLC1_1644 PF10150 Ribonuclease E/G family APLC1_1649 PF00155 Aminotransferase class I and II APLC1_1658 PF14437 MafB19-like deaminase APLC1_1666 PF00216 Bacterial DNA-binding protein APLC1_1669 PF00535 Glycosyl transferase family 2 APLC1_1674 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APLC1_1675 PF01343 Peptidase family S49 APLC1_1680 PF00924 Mechanosensitive ion channel APLC1_1681 PF04055 Radical SAM superfamily APLC1_1681 PF00919 Uncharacterized protein family UPF0004 APLC1_1681 PF18693 TRAM domain APLC1_1682 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APLC1_1692 PF01555 DNA methylase APLC1_1693 PF01381 Helix-turn-helix APLC1_1694 PF09225 Restriction endonuclease PvuII APLC1_1698 PF00990 Diguanylate cyclase, GGDEF domain APLC1_1710 PF00085 Thioredoxin APLC1_1713 PF02540 NAD synthase APLC1_1716 PF00684 DnaJ central domain APLC1_1716 PF00226 DnaJ domain APLC1_1716 PF01556 DnaJ C terminal domain APLC1_1717 PF00676 Dehydrogenase E1 component APLC1_1718 PF00871 Acetokinase family APLC1_1719 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APLC1_1719 PF09363 XFP C-terminal domain APLC1_1719 PF09364 XFP N-terminal domain APLC1_1720 PF09364 XFP N-terminal domain APLC1_1720 PF09363 XFP C-terminal domain APLC1_1720 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APLC1_1721 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APLC1_1721 PF09363 XFP C-terminal domain APLC1_1721 PF09364 XFP N-terminal domain APLC1_1722 PF02685 Glucokinase APLC1_1723 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain APLC1_1723 PF01835 MG2 domain APLC1_1723 PF07703 Alpha-2-macroglobulin bait region domain APLC1_1723 PF00207 Alpha-2-macroglobulin family APLC1_1724 PF00207 Alpha-2-macroglobulin family APLC1_1724 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain APLC1_1724 PF01835 MG2 domain APLC1_1724 PF07703 Alpha-2-macroglobulin bait region domain APLC1_1726 PF13614 AAA domain APLC1_1728 PF17092 Penicillin-binding protein OB-like domain APLC1_1728 PF00912 Transglycosylase APLC1_1728 PF00905 Penicillin binding protein transpeptidase domain APLC1_1729 PF04055 Radical SAM superfamily APLC1_1731 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APLC1_1732 PF00293 NUDIX domain APLC1_1733 PF03441 FAD binding domain of DNA photolyase APLC1_1733 PF00875 DNA photolyase APLC1_1734 PF00875 DNA photolyase APLC1_1734 PF03441 FAD binding domain of DNA photolyase APLC1_1736 PF03781 Sulfatase-modifying factor enzyme 1 APLC1_1737 PF00069 Protein kinase domain APLC1_1738 PF00805 Pentapeptide repeats (8 copies) APLC1_1738 PF00069 Protein kinase domain APLC1_1739 PF03781 Sulfatase-modifying factor enzyme 1 APLC1_1739 PF00069 Protein kinase domain APLC1_1740 PF00805 Pentapeptide repeats (8 copies) APLC1_1740 PF00069 Protein kinase domain APLC1_1741 PF00805 Pentapeptide repeats (8 copies) APLC1_1741 PF00069 Protein kinase domain APLC1_1742 PF03793 PASTA domain APLC1_1742 PF00069 Protein kinase domain APLC1_1744 PF00069 Protein kinase domain APLC1_1745 PF00805 Pentapeptide repeats (8 copies) APLC1_1745 PF00069 Protein kinase domain APLC1_1746 PF00069 Protein kinase domain APLC1_1746 PF00805 Pentapeptide repeats (8 copies) APLC1_1747 PF00069 Protein kinase domain APLC1_1754 PF00175 Oxidoreductase NAD-binding domain APLC1_1755 PF01022 Bacterial regulatory protein, arsR family APLC1_1756 PF02069 Prokaryotic metallothionein APLC1_1757 PF13426 PAS domain APLC1_1757 PF13188 PAS domain APLC1_1757 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1757 PF00989 PAS fold APLC1_1757 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1765 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase APLC1_1766 PF00977 Histidine biosynthesis protein APLC1_1767 PF00999 Sodium/hydrogen exchanger family APLC1_1768 PF00999 Sodium/hydrogen exchanger family APLC1_1778 PF13640 2OG-Fe(II) oxygenase superfamily APLC1_1779 PF13640 2OG-Fe(II) oxygenase superfamily APLC1_1780 PF13640 2OG-Fe(II) oxygenase superfamily APLC1_1781 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APLC1_1781 PF12706 Beta-lactamase superfamily domain APLC1_1783 PF09587 Bacterial capsule synthesis protein PGA_cap APLC1_1784 PF01263 Aldose 1-epimerase APLC1_1786 PF01116 Fructose-bisphosphate aldolase class-II APLC1_1792 PF01464 Transglycosylase SLT domain APLC1_1792 PF14718 Soluble lytic murein transglycosylase L domain APLC1_1794 PF13361 UvrD-like helicase C-terminal domain APLC1_1794 PF00580 UvrD/REP helicase N-terminal domain APLC1_1797 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APLC1_1798 PF00578 AhpC/TSA family APLC1_1801 PF00005 ABC transporter APLC1_1806 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1806 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1806 PF00989 PAS fold APLC1_1807 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase APLC1_1808 PF12706 Beta-lactamase superfamily domain APLC1_1809 PF01593 Flavin containing amine oxidoreductase APLC1_1812 PF01434 Peptidase family M41 APLC1_1812 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_1812 PF17862 AAA+ lid domain APLC1_1812 PF06480 FtsH Extracellular APLC1_1820 PF00092 von Willebrand factor type A domain APLC1_1835 PF00374 Nickel-dependent hydrogenase APLC1_1836 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APLC1_1837 PF00384 Molybdopterin oxidoreductase APLC1_1837 PF13237 4Fe-4S dicluster domain APLC1_1837 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APLC1_1837 PF01568 Molydopterin dinucleotide binding domain APLC1_1837 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APLC1_1838 PF03063 Prismane/CO dehydrogenase family APLC1_1839 PF03063 Prismane/CO dehydrogenase family APLC1_1840 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APLC1_1840 PF00037 4Fe-4S binding domain APLC1_1840 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APLC1_1841 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APLC1_1841 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APLC1_1842 PF01455 HupF/HypC family APLC1_1843 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APLC1_1843 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APLC1_1843 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APLC1_1843 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APLC1_1843 PF10371 Domain of unknown function APLC1_1844 PF01180 Dihydroorotate dehydrogenase APLC1_1846 PF03109 ABC1 family APLC1_1847 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APLC1_1853 PF01165 Ribosomal protein S21 APLC1_1854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1854 PF00672 HAMP domain APLC1_1854 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1856 PF01348 Type II intron maturase APLC1_1856 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1873 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_1873 PF07724 AAA domain (Cdc48 subfamily) APLC1_1873 PF17871 AAA lid domain APLC1_1873 PF02861 Clp amino terminal domain, pathogenicity island component APLC1_1873 PF10431 C-terminal, D2-small domain, of ClpB protein APLC1_1874 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1874 PF17149 Periplasmic sensor domain found in signal transduction proteins APLC1_1874 PF00672 HAMP domain APLC1_1874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1874 PF01627 Hpt domain APLC1_1874 PF00072 Response regulator receiver domain APLC1_1886 PF02686 Glu-tRNAGln amidotransferase C subunit APLC1_1893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1893 PF18415 Histidine kinase receptor ArcB trans-membrane domain APLC1_1893 PF01627 Hpt domain APLC1_1893 PF00989 PAS fold APLC1_1893 PF00072 Response regulator receiver domain APLC1_1893 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1894 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1894 PF00989 PAS fold APLC1_1894 PF01627 Hpt domain APLC1_1894 PF00497 Bacterial extracellular solute-binding proteins, family 3 APLC1_1894 PF00072 Response regulator receiver domain APLC1_1897 PF00072 Response regulator receiver domain APLC1_1898 PF13180 PDZ domain APLC1_1901 PF02684 Lipid-A-disaccharide synthetase APLC1_1902 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_1902 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APLC1_1903 PF07977 FabA-like domain APLC1_1904 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APLC1_1906 PF00188 Cysteine-rich secretory protein family APLC1_1912 PF12705 PD-(D/E)XK nuclease superfamily APLC1_1912 PF00580 UvrD/REP helicase N-terminal domain APLC1_1912 PF13361 UvrD-like helicase C-terminal domain APLC1_1916 PF13288 DXP reductoisomerase C-terminal domain APLC1_1916 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APLC1_1916 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APLC1_1917 PF00534 Glycosyl transferases group 1 APLC1_1917 PF08323 Starch synthase catalytic domain APLC1_1918 PF08323 Starch synthase catalytic domain APLC1_1918 PF00534 Glycosyl transferases group 1 APLC1_1924 PF01348 Type II intron maturase APLC1_1924 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1926 PF13358 DDE superfamily endonuclease APLC1_1936 PF01348 Type II intron maturase APLC1_1936 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_1954 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_1958 PF01134 Glucose inhibited division protein A APLC1_1958 PF13932 GidA associated domain APLC1_1968 PF01593 Flavin containing amine oxidoreductase APLC1_1970 PF09278 MerR, DNA binding APLC1_1970 PF00376 MerR family regulatory protein APLC1_1983 PF00579 tRNA synthetases class I (W and Y) APLC1_1984 PF00579 tRNA synthetases class I (W and Y) APLC1_1985 PF00512 His Kinase A (phospho-acceptor) domain APLC1_1985 PF01627 Hpt domain APLC1_1985 PF00072 Response regulator receiver domain APLC1_1985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_1985 PF00672 HAMP domain APLC1_1985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_1986 PF00072 Response regulator receiver domain APLC1_1986 PF00486 Transcriptional regulatory protein, C terminal APLC1_1987 PF00585 C-terminal regulatory domain of Threonine dehydratase APLC1_1987 PF00291 Pyridoxal-phosphate dependent enzyme APLC1_1989 PF00148 Nitrogenase component 1 type Oxidoreductase APLC1_1990 PF17265 Family of unknown function (DUF5331) APLC1_1991 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APLC1_1992 PF17287 POTRA domain APLC1_1992 PF08479 POTRA domain, ShlB-type APLC1_1992 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APLC1_1994 PF01841 Transglutaminase-like superfamily APLC1_1997 PF13358 DDE superfamily endonuclease APLC1_2003 PF13358 DDE superfamily endonuclease APLC1_2004 PF13358 DDE superfamily endonuclease APLC1_2022 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_2022 PF00672 HAMP domain APLC1_2022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2022 PF00072 Response regulator receiver domain APLC1_2022 PF01627 Hpt domain APLC1_2022 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2024 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_2027 PF16363 GDP-mannose 4,6 dehydratase APLC1_2028 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_2029 PF05685 Putative restriction endonuclease APLC1_2030 PF05685 Putative restriction endonuclease APLC1_2035 PF06827 Zinc finger found in FPG and IleRS APLC1_2035 PF00133 tRNA synthetases class I (I, L, M and V) APLC1_2035 PF08264 Anticodon-binding domain of tRNA APLC1_2036 PF08264 Anticodon-binding domain of tRNA APLC1_2036 PF00133 tRNA synthetases class I (I, L, M and V) APLC1_2036 PF06827 Zinc finger found in FPG and IleRS APLC1_2037 PF05969 Photosystem II complex subunit Ycf12 APLC1_2038 PF14251 Domain of unknown function (DUF4346) APLC1_2039 PF00317 Ribonucleotide reductase, all-alpha domain APLC1_2039 PF03477 ATP cone domain APLC1_2039 PF02867 Ribonucleotide reductase, barrel domain APLC1_2040 PF00268 Ribonucleotide reductase, small chain APLC1_2041 PF00268 Ribonucleotide reductase, small chain APLC1_2045 PF00557 Metallopeptidase family M24 APLC1_2046 PF00072 Response regulator receiver domain APLC1_2046 PF00486 Transcriptional regulatory protein, C terminal APLC1_2051 PF02463 RecF/RecN/SMC N terminal domain APLC1_2053 PF03471 Transporter associated domain APLC1_2053 PF00999 Sodium/hydrogen exchanger family APLC1_2054 PF01183 Glycosyl hydrolases family 25 APLC1_2055 PF01209 ubiE/COQ5 methyltransferase family APLC1_2056 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_2057 PF12911 N-terminal TM domain of oligopeptide transport permease C APLC1_2057 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_2058 PF04545 Sigma-70, region 4 APLC1_2058 PF04542 Sigma-70 region 2 APLC1_2058 PF04539 Sigma-70 region 3 APLC1_2058 PF00140 Sigma-70 factor, region 1.2 APLC1_2059 PF00171 Aldehyde dehydrogenase family APLC1_2060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APLC1_2060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APLC1_2060 PF00205 Thiamine pyrophosphate enzyme, central domain APLC1_2061 PF01557 Fumarylacetoacetate (FAA) hydrolase family APLC1_2062 PF01888 CbiD APLC1_2063 PF00117 Glutamine amidotransferase class-I APLC1_2063 PF00958 GMP synthase C terminal domain APLC1_2064 PF00958 GMP synthase C terminal domain APLC1_2064 PF00117 Glutamine amidotransferase class-I APLC1_2067 PF03448 MgtE intracellular N domain APLC1_2067 PF00571 CBS domain APLC1_2067 PF01769 Divalent cation transporter APLC1_2069 PF02308 MgtC family APLC1_2070 PF16657 Maltogenic Amylase, C-terminal domain APLC1_2070 PF00128 Alpha amylase, catalytic domain APLC1_2071 PF01979 Amidohydrolase family APLC1_2073 PF00171 Aldehyde dehydrogenase family APLC1_2077 PF00072 Response regulator receiver domain APLC1_2077 PF00486 Transcriptional regulatory protein, C terminal APLC1_2079 PF16166 Chloroplast import apparatus Tic20-like APLC1_2081 PF00464 Serine hydroxymethyltransferase APLC1_2082 PF00464 Serine hydroxymethyltransferase APLC1_2083 PF00953 Glycosyl transferase family 4 APLC1_2084 PF00994 Probable molybdopterin binding domain APLC1_2084 PF18146 Damage-inducible protein CinA KH domain APLC1_2084 PF02464 Competence-damaged protein APLC1_2086 PF01220 Dehydroquinase class II APLC1_2090 PF01966 HD domain APLC1_2090 PF07697 7TM-HD extracellular APLC1_2090 PF07698 7TM receptor with intracellular HD hydrolase APLC1_2091 PF07697 7TM-HD extracellular APLC1_2091 PF01966 HD domain APLC1_2091 PF07698 7TM receptor with intracellular HD hydrolase APLC1_2093 PF08264 Anticodon-binding domain of tRNA APLC1_2093 PF00133 tRNA synthetases class I (I, L, M and V) APLC1_2093 PF13603 Leucyl-tRNA synthetase, Domain 2 APLC1_2093 PF09334 tRNA synthetases class I (M) APLC1_2097 PF02272 DHHA1 domain APLC1_2097 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APLC1_2097 PF01411 tRNA synthetases class II (A) APLC1_2098 PF01411 tRNA synthetases class II (A) APLC1_2098 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APLC1_2098 PF02272 DHHA1 domain APLC1_2100 PF00849 RNA pseudouridylate synthase APLC1_2101 PF09620 CRISPR-associated protein (Cas_csx3) APLC1_2104 PF00580 UvrD/REP helicase N-terminal domain APLC1_2104 PF13361 UvrD-like helicase C-terminal domain APLC1_2104 PF12705 PD-(D/E)XK nuclease superfamily APLC1_2105 PF02926 THUMP domain APLC1_2105 PF01170 Putative RNA methylase family UPF0020 APLC1_2107 PF12697 Alpha/beta hydrolase family APLC1_2108 PF00176 SNF2 family N-terminal domain APLC1_2108 PF00271 Helicase conserved C-terminal domain APLC1_2114 PF00850 Histone deacetylase domain APLC1_2117 PF04107 Glutamate-cysteine ligase family 2(GCS2) APLC1_2118 PF00588 SpoU rRNA Methylase family APLC1_2119 PF01476 LysM domain APLC1_2119 PF01551 Peptidase family M23 APLC1_2121 PF10417 C-terminal domain of 1-Cys peroxiredoxin APLC1_2121 PF00578 AhpC/TSA family APLC1_2122 PF07995 Glucose / Sorbosone dehydrogenase APLC1_2123 PF08386 TAP-like protein APLC1_2123 PF00561 alpha/beta hydrolase fold APLC1_2124 PF00707 Translation initiation factor IF-3, C-terminal domain APLC1_2124 PF05198 Translation initiation factor IF-3, N-terminal domain APLC1_2136 PF16658 Class II release factor RF3, C-terminal domain APLC1_2136 PF00009 Elongation factor Tu GTP binding domain APLC1_2137 PF00230 Major intrinsic protein APLC1_2138 PF00005 ABC transporter APLC1_2138 PF17912 MalK OB fold domain APLC1_2140 PF00521 DNA gyrase/topoisomerase IV, subunit A APLC1_2140 PF03989 DNA gyrase C-terminal domain, beta-propeller APLC1_2141 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2141 PF00072 Response regulator receiver domain APLC1_2141 PF00672 HAMP domain APLC1_2141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2141 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_2141 PF01627 Hpt domain APLC1_2143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2146 PF06418 CTP synthase N-terminus APLC1_2146 PF00117 Glutamine amidotransferase class-I APLC1_2147 PF01266 FAD dependent oxidoreductase APLC1_2150 PF02463 RecF/RecN/SMC N terminal domain APLC1_2150 PF06470 SMC proteins Flexible Hinge Domain APLC1_2154 PF07517 SecA DEAD-like domain APLC1_2154 PF07516 SecA Wing and Scaffold domain APLC1_2154 PF01043 SecA preprotein cross-linking domain APLC1_2155 PF12697 Alpha/beta hydrolase family APLC1_2157 PF04471 Restriction endonuclease APLC1_2157 PF14338 Mrr N-terminal domain APLC1_2158 PF01555 DNA methylase APLC1_2164 PF00557 Metallopeptidase family M24 APLC1_2166 PF08447 PAS fold APLC1_2166 PF07536 HWE histidine kinase APLC1_2166 PF13426 PAS domain APLC1_2167 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APLC1_2167 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APLC1_2173 PF01593 Flavin containing amine oxidoreductase APLC1_2175 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) APLC1_2178 PF02445 Quinolinate synthetase A protein APLC1_2179 PF00679 Elongation factor G C-terminus APLC1_2179 PF14492 Elongation Factor G, domain II APLC1_2179 PF00009 Elongation factor Tu GTP binding domain APLC1_2179 PF03144 Elongation factor Tu domain 2 APLC1_2182 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus APLC1_2182 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term APLC1_2183 PF00582 Universal stress protein family APLC1_2184 PF00180 Isocitrate/isopropylmalate dehydrogenase APLC1_2185 PF01555 DNA methylase APLC1_2187 PF00931 NB-ARC domain APLC1_2187 PF00400 WD domain, G-beta repeat APLC1_2195 PF01209 ubiE/COQ5 methyltransferase family APLC1_2196 PF13419 Haloacid dehalogenase-like hydrolase APLC1_2197 PF02915 Rubrerythrin APLC1_2199 PF01979 Amidohydrolase family APLC1_2201 PF00963 Cohesin domain APLC1_2201 PF00395 S-layer homology domain APLC1_2205 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_2206 PF01740 STAS domain APLC1_2206 PF00916 Sulfate permease family APLC1_2207 PF00916 Sulfate permease family APLC1_2207 PF01740 STAS domain APLC1_2208 PF01740 STAS domain APLC1_2208 PF00916 Sulfate permease family APLC1_2209 PF00916 Sulfate permease family APLC1_2209 PF01740 STAS domain APLC1_2213 PF00501 AMP-binding enzyme APLC1_2215 PF02817 e3 binding domain APLC1_2215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APLC1_2215 PF00364 Biotin-requiring enzyme APLC1_2216 PF08240 Alcohol dehydrogenase GroES-like domain APLC1_2216 PF00107 Zinc-binding dehydrogenase APLC1_2218 PF02492 CobW/HypB/UreG, nucleotide-binding domain APLC1_2218 PF07683 Cobalamin synthesis protein cobW C-terminal domain APLC1_2220 PF01227 GTP cyclohydrolase I APLC1_2230 PF01471 Putative peptidoglycan binding domain APLC1_2230 PF07486 Cell Wall Hydrolase APLC1_2235 PF00072 Response regulator receiver domain APLC1_2235 PF00486 Transcriptional regulatory protein, C terminal APLC1_2236 PF00005 ABC transporter APLC1_2236 PF13732 Domain of unknown function (DUF4162) APLC1_2255 PF07836 DmpG-like communication domain APLC1_2255 PF00682 HMGL-like APLC1_2256 PF16363 GDP-mannose 4,6 dehydratase APLC1_2258 PF02348 Cytidylyltransferase APLC1_2259 PF03328 HpcH/HpaI aldolase/citrate lyase family APLC1_2282 PF00459 Inositol monophosphatase family APLC1_2285 PF00571 CBS domain APLC1_2285 PF01743 Poly A polymerase head domain APLC1_2286 PF00571 CBS domain APLC1_2286 PF01743 Poly A polymerase head domain APLC1_2287 PF01381 Helix-turn-helix APLC1_2292 PF01189 16S rRNA methyltransferase RsmB/F APLC1_2292 PF01029 NusB family APLC1_2293 PF01189 16S rRNA methyltransferase RsmB/F APLC1_2293 PF01029 NusB family APLC1_2294 PF01638 HxlR-like helix-turn-helix APLC1_2295 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APLC1_2295 PF02896 PEP-utilising enzyme, TIM barrel domain APLC1_2295 PF00391 PEP-utilising enzyme, mobile domain APLC1_2305 PF00355 Rieske [2Fe-2S] domain APLC1_2306 PF16639 Apocytochrome F, N-terminal APLC1_2306 PF01333 Apocytochrome F, C-terminal APLC1_2307 PF12697 Alpha/beta hydrolase family APLC1_2308 PF18087 Rubisco Assembly chaperone C-terminal domain APLC1_2308 PF18578 Rubisco accumulation factor 1 alpha helical domain APLC1_2308 PF18579 Rubisco accumulation factor 1 helix turn helix domain APLC1_2328 PF03099 Biotin/lipoate A/B protein ligase family APLC1_2332 PF00873 AcrB/AcrD/AcrF family APLC1_2337 PF00873 AcrB/AcrD/AcrF family APLC1_2345 PF00171 Aldehyde dehydrogenase family APLC1_2347 PF06838 Methionine gamma-lyase APLC1_2351 PF00989 PAS fold APLC1_2351 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2351 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2352 PF00072 Response regulator receiver domain APLC1_2352 PF00990 Diguanylate cyclase, GGDEF domain APLC1_2357 PF17886 HSP20-like domain found in ArsA APLC1_2357 PF02374 Anion-transporting ATPase APLC1_2376 PF04025 Domain of unknown function (DUF370) APLC1_2377 PF00625 Guanylate kinase APLC1_2378 PF00092 von Willebrand factor type A domain APLC1_2379 PF00574 Clp protease APLC1_2380 PF00574 Clp protease APLC1_2381 PF00574 Clp protease APLC1_2382 PF00574 Clp protease APLC1_2383 PF01556 DnaJ C terminal domain APLC1_2383 PF00684 DnaJ central domain APLC1_2383 PF00226 DnaJ domain APLC1_2393 PF00005 ABC transporter APLC1_2393 PF00664 ABC transporter transmembrane region APLC1_2396 PF13519 von Willebrand factor type A domain APLC1_2396 PF17863 AAA lid domain APLC1_2396 PF01078 Magnesium chelatase, subunit ChlI APLC1_2397 PF17863 AAA lid domain APLC1_2397 PF01078 Magnesium chelatase, subunit ChlI APLC1_2397 PF13519 von Willebrand factor type A domain APLC1_2399 PF00533 BRCA1 C Terminus (BRCT) domain APLC1_2399 PF01653 NAD-dependent DNA ligase adenylation domain APLC1_2399 PF03120 NAD-dependent DNA ligase OB-fold domain APLC1_2399 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APLC1_2399 PF12826 Helix-hairpin-helix motif APLC1_2400 PF00533 BRCA1 C Terminus (BRCT) domain APLC1_2400 PF01653 NAD-dependent DNA ligase adenylation domain APLC1_2400 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APLC1_2400 PF12826 Helix-hairpin-helix motif APLC1_2400 PF03120 NAD-dependent DNA ligase OB-fold domain APLC1_2401 PF01699 Sodium/calcium exchanger protein APLC1_2403 PF00069 Protein kinase domain APLC1_2404 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APLC1_2404 PF00400 WD domain, G-beta repeat APLC1_2405 PF00395 S-layer homology domain APLC1_2405 PF04966 Carbohydrate-selective porin, OprB family APLC1_2408 PF00486 Transcriptional regulatory protein, C terminal APLC1_2408 PF00072 Response regulator receiver domain APLC1_2410 PF02633 Creatinine amidohydrolase APLC1_2411 PF01627 Hpt domain APLC1_2411 PF00672 HAMP domain APLC1_2411 PF00072 Response regulator receiver domain APLC1_2411 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_2411 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2412 PF12706 Beta-lactamase superfamily domain APLC1_2414 PF01264 Chorismate synthase APLC1_2415 PF02468 Photosystem II reaction centre N protein (psbN) APLC1_2416 PF00737 Photosystem II 10 kDa phosphoprotein APLC1_2417 PF02416 mttA/Hcf106 family APLC1_2418 PF01195 Peptidyl-tRNA hydrolase APLC1_2420 PF09587 Bacterial capsule synthesis protein PGA_cap APLC1_2424 PF09382 RQC domain APLC1_2424 PF00570 HRDC domain APLC1_2424 PF00270 DEAD/DEAH box helicase APLC1_2424 PF00271 Helicase conserved C-terminal domain APLC1_2424 PF16124 RecQ zinc-binding APLC1_2425 PF01202 Shikimate kinase APLC1_2427 PF02441 Flavoprotein APLC1_2428 PF02548 Ketopantoate hydroxymethyltransferase APLC1_2431 PF00521 DNA gyrase/topoisomerase IV, subunit A APLC1_2431 PF03989 DNA gyrase C-terminal domain, beta-propeller APLC1_2432 PF03989 DNA gyrase C-terminal domain, beta-propeller APLC1_2432 PF00521 DNA gyrase/topoisomerase IV, subunit A APLC1_2433 PF03989 DNA gyrase C-terminal domain, beta-propeller APLC1_2433 PF00521 DNA gyrase/topoisomerase IV, subunit A APLC1_2434 PF00521 DNA gyrase/topoisomerase IV, subunit A APLC1_2434 PF03989 DNA gyrase C-terminal domain, beta-propeller APLC1_2435 PF00850 Histone deacetylase domain APLC1_2436 PF17757 UvrB interaction domain APLC1_2436 PF00271 Helicase conserved C-terminal domain APLC1_2436 PF04851 Type III restriction enzyme, res subunit APLC1_2436 PF02151 UvrB/uvrC motif APLC1_2436 PF12344 Ultra-violet resistance protein B APLC1_2437 PF01554 MatE APLC1_2438 PF00427 Phycobilisome Linker polypeptide APLC1_2448 PF01966 HD domain APLC1_2448 PF18211 Csm1 subunit domain B APLC1_2450 PF03787 RAMP superfamily APLC1_2452 PF03787 RAMP superfamily APLC1_2471 PF00069 Protein kinase domain APLC1_2471 PF03793 PASTA domain APLC1_2481 PF01867 CRISPR associated protein Cas1 APLC1_2482 PF09827 CRISPR associated protein Cas2 APLC1_2486 PF02463 RecF/RecN/SMC N terminal domain APLC1_2487 PF02463 RecF/RecN/SMC N terminal domain APLC1_2488 PF01180 Dihydroorotate dehydrogenase APLC1_2491 PF01761 3-dehydroquinate synthase APLC1_2492 PF01761 3-dehydroquinate synthase APLC1_2494 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_2495 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_2497 PF00005 ABC transporter APLC1_2497 PF08402 TOBE domain APLC1_2499 PF00487 Fatty acid desaturase APLC1_2507 PF07664 Ferrous iron transport protein B C terminus APLC1_2507 PF02421 Ferrous iron transport protein B APLC1_2507 PF07670 Nucleoside recognition APLC1_2508 PF17910 FeoB cytosolic helical domain APLC1_2508 PF07664 Ferrous iron transport protein B C terminus APLC1_2508 PF02421 Ferrous iron transport protein B APLC1_2508 PF07670 Nucleoside recognition APLC1_2512 PF02492 CobW/HypB/UreG, nucleotide-binding domain APLC1_2512 PF07683 Cobalamin synthesis protein cobW C-terminal domain APLC1_2514 PF00145 C-5 cytosine-specific DNA methylase APLC1_2515 PF00145 C-5 cytosine-specific DNA methylase APLC1_2522 PF14229 Domain of unknown function (DUF4332) APLC1_2522 PF00152 tRNA synthetases class II (D, K and N) APLC1_2522 PF01336 OB-fold nucleic acid binding domain APLC1_2523 PF01336 OB-fold nucleic acid binding domain APLC1_2523 PF00152 tRNA synthetases class II (D, K and N) APLC1_2536 PF10431 C-terminal, D2-small domain, of ClpB protein APLC1_2536 PF02861 Clp amino terminal domain, pathogenicity island component APLC1_2536 PF17871 AAA lid domain APLC1_2536 PF07724 AAA domain (Cdc48 subfamily) APLC1_2536 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_2540 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_2541 PF00005 ABC transporter APLC1_2542 PF00005 ABC transporter APLC1_2543 PF00005 ABC transporter APLC1_2563 PF00881 Nitroreductase family APLC1_2581 PF00082 Subtilase family APLC1_2597 PF01613 Flavin reductase like domain APLC1_2597 PF00753 Metallo-beta-lactamase superfamily APLC1_2598 PF01613 Flavin reductase like domain APLC1_2598 PF00258 Flavodoxin APLC1_2601 PF04101 Glycosyltransferase family 28 C-terminal domain APLC1_2601 PF03033 Glycosyltransferase family 28 N-terminal domain APLC1_2606 PF00069 Protein kinase domain APLC1_2606 PF13191 AAA ATPase domain APLC1_2607 PF00117 Glutamine amidotransferase class-I APLC1_2609 PF03819 MazG nucleotide pyrophosphohydrolase domain APLC1_2616 PF13419 Haloacid dehalogenase-like hydrolase APLC1_2619 PF09335 SNARE associated Golgi protein APLC1_2621 PF07885 Ion channel APLC1_2621 PF02254 TrkA-N domain APLC1_2623 PF00361 Proton-conducting membrane transporter APLC1_2624 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APLC1_2624 PF00361 Proton-conducting membrane transporter APLC1_2624 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus APLC1_2625 PF00361 Proton-conducting membrane transporter APLC1_2626 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APLC1_2626 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APLC1_2626 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APLC1_2627 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APLC1_2627 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APLC1_2627 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APLC1_2628 PF16363 GDP-mannose 4,6 dehydratase APLC1_2633 PF01699 Sodium/calcium exchanger protein APLC1_2634 PF00750 tRNA synthetases class I (R) APLC1_2634 PF03485 Arginyl tRNA synthetase N terminal domain APLC1_2634 PF05746 DALR anticodon binding domain APLC1_2644 PF00072 Response regulator receiver domain APLC1_2644 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_2644 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2644 PF00672 HAMP domain APLC1_2644 PF01627 Hpt domain APLC1_2645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2645 PF00497 Bacterial extracellular solute-binding proteins, family 3 APLC1_2645 PF01627 Hpt domain APLC1_2645 PF00072 Response regulator receiver domain APLC1_2645 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2646 PF00563 EAL domain APLC1_2646 PF03707 Bacterial signalling protein N terminal repeat APLC1_2646 PF00990 Diguanylate cyclase, GGDEF domain APLC1_2647 PF02580 D-Tyr-tRNA(Tyr) deacylase APLC1_2648 PF02492 CobW/HypB/UreG, nucleotide-binding domain APLC1_2648 PF07683 Cobalamin synthesis protein cobW C-terminal domain APLC1_2649 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APLC1_2649 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_2667 PF01385 Probable transposase APLC1_2667 PF12323 Helix-turn-helix domain APLC1_2667 PF07282 Putative transposase DNA-binding domain APLC1_2674 PF00534 Glycosyl transferases group 1 APLC1_2674 PF00862 Sucrose synthase APLC1_2677 PF01336 OB-fold nucleic acid binding domain APLC1_2677 PF00152 tRNA synthetases class II (D, K and N) APLC1_2686 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APLC1_2686 PF03466 LysR substrate binding domain APLC1_2703 PF13358 DDE superfamily endonuclease APLC1_2712 PF18643 BsaWI restriction endonuclease type 2 APLC1_2714 PF01794 Ferric reductase like transmembrane component APLC1_2715 PF00069 Protein kinase domain APLC1_2716 PF00805 Pentapeptide repeats (8 copies) APLC1_2716 PF00069 Protein kinase domain APLC1_2718 PF13180 PDZ domain APLC1_2721 PF01235 Sodium:alanine symporter family APLC1_2723 PF10693 Protein of unknown function (DUF2499) APLC1_2725 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APLC1_2725 PF00400 WD domain, G-beta repeat APLC1_2727 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_2727 PF01348 Type II intron maturase APLC1_2729 PF04055 Radical SAM superfamily APLC1_2732 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_2732 PF17866 AAA lid domain APLC1_2740 PF05419 GUN4-like APLC1_2740 PF16416 ARM-like repeat domain, GUN4-N terminal APLC1_2750 PF05419 GUN4-like APLC1_2750 PF16416 ARM-like repeat domain, GUN4-N terminal APLC1_2752 PF00012 Hsp70 protein APLC1_2755 PF17820 PDZ domain APLC1_2755 PF13180 PDZ domain APLC1_2758 PF07444 Ycf66 protein N-terminus APLC1_2759 PF00510 Cytochrome c oxidase subunit III APLC1_2760 PF00115 Cytochrome C and Quinol oxidase polypeptide I APLC1_2761 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APLC1_2761 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APLC1_2762 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APLC1_2762 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APLC1_2764 PF01040 UbiA prenyltransferase family APLC1_2766 PF01590 GAF domain APLC1_2766 PF00563 EAL domain APLC1_2766 PF00360 Phytochrome region APLC1_2766 PF00990 Diguanylate cyclase, GGDEF domain APLC1_2767 PF00360 Phytochrome region APLC1_2767 PF01590 GAF domain APLC1_2767 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2767 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2767 PF08446 PAS fold APLC1_2768 PF00072 Response regulator receiver domain APLC1_2768 PF01627 Hpt domain APLC1_2768 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2768 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2769 PF00563 EAL domain APLC1_2769 PF01590 GAF domain APLC1_2769 PF00990 Diguanylate cyclase, GGDEF domain APLC1_2769 PF00360 Phytochrome region APLC1_2770 PF00400 WD domain, G-beta repeat APLC1_2772 PF00395 S-layer homology domain APLC1_2772 PF04966 Carbohydrate-selective porin, OprB family APLC1_2773 PF00395 S-layer homology domain APLC1_2773 PF04966 Carbohydrate-selective porin, OprB family APLC1_2774 PF08865 Domain of unknown function (DUF1830) APLC1_2781 PF01348 Type II intron maturase APLC1_2781 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_2783 PF02785 Biotin carboxylase C-terminal domain APLC1_2783 PF00289 Biotin carboxylase, N-terminal domain APLC1_2783 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APLC1_2784 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APLC1_2784 PF02785 Biotin carboxylase C-terminal domain APLC1_2784 PF00289 Biotin carboxylase, N-terminal domain APLC1_2790 PF01385 Probable transposase APLC1_2790 PF12323 Helix-turn-helix domain APLC1_2790 PF07282 Putative transposase DNA-binding domain APLC1_2794 PF00395 S-layer homology domain APLC1_2794 PF00963 Cohesin domain APLC1_2800 PF12911 N-terminal TM domain of oligopeptide transport permease C APLC1_2800 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_2801 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_2801 PF12911 N-terminal TM domain of oligopeptide transport permease C APLC1_2835 PF07730 Histidine kinase APLC1_2836 PF00072 Response regulator receiver domain APLC1_2836 PF00196 Bacterial regulatory proteins, luxR family APLC1_2844 PF12705 PD-(D/E)XK nuclease superfamily APLC1_2844 PF00580 UvrD/REP helicase N-terminal domain APLC1_2844 PF13361 UvrD-like helicase C-terminal domain APLC1_2845 PF13361 UvrD-like helicase C-terminal domain APLC1_2845 PF00580 UvrD/REP helicase N-terminal domain APLC1_2846 PF13361 UvrD-like helicase C-terminal domain APLC1_2846 PF00580 UvrD/REP helicase N-terminal domain APLC1_2847 PF12705 PD-(D/E)XK nuclease superfamily APLC1_2848 PF00069 Protein kinase domain APLC1_2849 PF00294 pfkB family carbohydrate kinase APLC1_2850 PF07228 Stage II sporulation protein E (SpoIIE) APLC1_2850 PF00672 HAMP domain APLC1_2852 PF00403 Heavy-metal-associated domain APLC1_2853 PF00117 Glutamine amidotransferase class-I APLC1_2853 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APLC1_2854 PF01740 STAS domain APLC1_2855 PF08032 RNA 2'-O ribose methyltransferase substrate binding APLC1_2855 PF00588 SpoU rRNA Methylase family APLC1_2857 PF03707 Bacterial signalling protein N terminal repeat APLC1_2857 PF00990 Diguanylate cyclase, GGDEF domain APLC1_2857 PF00563 EAL domain APLC1_2863 PF03707 Bacterial signalling protein N terminal repeat APLC1_2863 PF00563 EAL domain APLC1_2863 PF00990 Diguanylate cyclase, GGDEF domain APLC1_2869 PF00145 C-5 cytosine-specific DNA methylase APLC1_2876 PF00809 Pterin binding enzyme APLC1_2877 PF00121 Triosephosphate isomerase APLC1_2879 PF12697 Alpha/beta hydrolase family APLC1_2882 PF12706 Beta-lactamase superfamily domain APLC1_2884 PF17792 ThiD2 family APLC1_2884 PF02581 Thiamine monophosphate synthase APLC1_2885 PF01370 NAD dependent epimerase/dehydratase family APLC1_2888 PF01628 HrcA protein C terminal domain APLC1_2889 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APLC1_2890 PF16363 GDP-mannose 4,6 dehydratase APLC1_2892 PF09587 Bacterial capsule synthesis protein PGA_cap APLC1_2895 PF13419 Haloacid dehalogenase-like hydrolase APLC1_2898 PF00005 ABC transporter APLC1_2899 PF01225 Mur ligase family, catalytic domain APLC1_2899 PF02875 Mur ligase family, glutamate ligase domain APLC1_2899 PF08245 Mur ligase middle domain APLC1_2901 PF00005 ABC transporter APLC1_2901 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APLC1_2902 PF01132 Elongation factor P (EF-P) OB domain APLC1_2902 PF08207 Elongation factor P (EF-P) KOW-like domain APLC1_2902 PF09285 Elongation factor P, C-terminal APLC1_2903 PF00364 Biotin-requiring enzyme APLC1_2905 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APLC1_2907 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_2907 PF00512 His Kinase A (phospho-acceptor) domain APLC1_2907 PF00497 Bacterial extracellular solute-binding proteins, family 3 APLC1_2908 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APLC1_2908 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APLC1_2910 PF01555 DNA methylase APLC1_2911 PF13085 2Fe-2S iron-sulfur cluster binding domain APLC1_2913 PF01242 6-pyruvoyl tetrahydropterin synthase APLC1_2925 PF02223 Thymidylate kinase APLC1_2927 PF00124 Photosynthetic reaction centre protein APLC1_2934 PF00453 Ribosomal protein L20 APLC1_2935 PF01632 Ribosomal protein L35 APLC1_2936 PF14489 QueF-like protein APLC1_2938 PF02675 S-adenosylmethionine decarboxylase APLC1_2941 PF02638 Glycosyl hydrolase-like 10 APLC1_2942 PF00535 Glycosyl transferase family 2 APLC1_2948 PF07650 KH domain APLC1_2948 PF01926 50S ribosome-binding GTPase APLC1_2949 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APLC1_2950 PF02687 FtsX-like permease family APLC1_2950 PF12704 MacB-like periplasmic core domain APLC1_2950 PF00005 ABC transporter APLC1_2951 PF08486 Stage II sporulation protein APLC1_2952 PF00575 S1 RNA binding domain APLC1_2952 PF16921 Tex protein YqgF-like domain APLC1_2952 PF09371 Tex-like protein N-terminal domain APLC1_2952 PF17674 HHH domain APLC1_2953 PF17674 HHH domain APLC1_2953 PF16921 Tex protein YqgF-like domain APLC1_2953 PF00575 S1 RNA binding domain APLC1_2953 PF09371 Tex-like protein N-terminal domain APLC1_2955 PF07282 Putative transposase DNA-binding domain APLC1_2955 PF01385 Probable transposase APLC1_2955 PF12323 Helix-turn-helix domain APLC1_2958 PF00561 alpha/beta hydrolase fold APLC1_2960 PF09423 PhoD-like phosphatase APLC1_2960 PF16655 PhoD-like phosphatase, N-terminal domain APLC1_2962 PF12697 Alpha/beta hydrolase family APLC1_2963 PF08264 Anticodon-binding domain of tRNA APLC1_2963 PF09334 tRNA synthetases class I (M) APLC1_2963 PF00133 tRNA synthetases class I (I, L, M and V) APLC1_2966 PF00485 Phosphoribulokinase / Uridine kinase family APLC1_2971 PF06463 Molybdenum Cofactor Synthesis C APLC1_2971 PF04055 Radical SAM superfamily APLC1_2972 PF06463 Molybdenum Cofactor Synthesis C APLC1_2972 PF04055 Radical SAM superfamily APLC1_2973 PF01479 S4 domain APLC1_2973 PF00163 Ribosomal protein S4/S9 N-terminal domain APLC1_2975 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APLC1_2976 PF00483 Nucleotidyl transferase APLC1_2977 PF00483 Nucleotidyl transferase APLC1_2978 PF01370 NAD dependent epimerase/dehydratase family APLC1_2980 PF08484 C-methyltransferase C-terminal domain APLC1_2980 PF08421 Putative zinc binding domain APLC1_2982 PF08041 PetM family of cytochrome b6f complex subunit 7 APLC1_2983 PF13460 NAD(P)H-binding APLC1_2984 PF01513 ATP-NAD kinase APLC1_2985 PF00072 Response regulator receiver domain APLC1_2985 PF00486 Transcriptional regulatory protein, C terminal APLC1_2988 PF01348 Type II intron maturase APLC1_2988 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_2991 PF04015 Domain of unknown function (DUF362) APLC1_2992 PF08241 Methyltransferase domain APLC1_2993 PF00270 DEAD/DEAH box helicase APLC1_2993 PF00271 Helicase conserved C-terminal domain APLC1_2993 PF17191 RecG wedge domain APLC1_2995 PF00889 Elongation factor TS APLC1_2996 PF00318 Ribosomal protein S2 APLC1_2997 PF08078 PsaX family APLC1_3002 PF04480 Protein of unknown function (DUF559) APLC1_3008 PF02463 RecF/RecN/SMC N terminal domain APLC1_3010 PF10544 T5orf172 domain APLC1_3014 PF02875 Mur ligase family, glutamate ligase domain APLC1_3014 PF08245 Mur ligase middle domain APLC1_3016 PF01716 Manganese-stabilising protein / photosystem II polypeptide APLC1_3017 PF00696 Amino acid kinase family APLC1_3018 PF00291 Pyridoxal-phosphate dependent enzyme APLC1_3020 PF00570 HRDC domain APLC1_3020 PF01612 3'-5' exonuclease APLC1_3025 PF01192 RNA polymerase Rpb6 APLC1_3027 PF01042 Endoribonuclease L-PSP APLC1_3030 PF00082 Subtilase family APLC1_3032 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_3037 PF00378 Enoyl-CoA hydratase/isomerase APLC1_3038 PF00586 AIR synthase related protein, N-terminal domain APLC1_3038 PF02769 AIR synthase related protein, C-terminal domain APLC1_3039 PF03330 Lytic transglycolase APLC1_3040 PF02569 Pantoate-beta-alanine ligase APLC1_3040 PF02224 Cytidylate kinase APLC1_3041 PF02224 Cytidylate kinase APLC1_3041 PF02569 Pantoate-beta-alanine ligase APLC1_3042 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain APLC1_3042 PF01522 Polysaccharide deacetylase APLC1_3043 PF01522 Polysaccharide deacetylase APLC1_3044 PF02391 MoaE protein APLC1_3045 PF08281 Sigma-70, region 4 APLC1_3045 PF04542 Sigma-70 region 2 APLC1_3050 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus APLC1_3051 PF04024 PspC domain APLC1_3053 PF01522 Polysaccharide deacetylase APLC1_3068 PF01330 RuvA N terminal domain APLC1_3068 PF07499 RuvA, C-terminal domain APLC1_3077 PF17782 DprA winged helix domain APLC1_3077 PF02481 DNA recombination-mediator protein A APLC1_3078 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APLC1_3079 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APLC1_3081 PF02673 Bacitracin resistance protein BacA APLC1_3083 PF01520 N-acetylmuramoyl-L-alanine amidase APLC1_3084 PF00578 AhpC/TSA family APLC1_3085 PF13344 Haloacid dehalogenase-like hydrolase APLC1_3085 PF00293 NUDIX domain APLC1_3086 PF00561 alpha/beta hydrolase fold APLC1_3087 PF03309 Type III pantothenate kinase APLC1_3088 PF00805 Pentapeptide repeats (8 copies) APLC1_3088 PF00069 Protein kinase domain APLC1_3091 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APLC1_3092 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APLC1_3093 PF00999 Sodium/hydrogen exchanger family APLC1_3093 PF00582 Universal stress protein family APLC1_3094 PF02092 Glycyl-tRNA synthetase beta subunit APLC1_3094 PF05746 DALR anticodon binding domain APLC1_3096 PF00805 Pentapeptide repeats (8 copies) APLC1_3096 PF00069 Protein kinase domain APLC1_3097 PF00355 Rieske [2Fe-2S] domain APLC1_3100 PF03816 Cell envelope-related transcriptional attenuator domain APLC1_3102 PF00834 Ribulose-phosphate 3 epimerase family APLC1_3104 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_3104 PF00072 Response regulator receiver domain APLC1_3111 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_3114 PF00270 DEAD/DEAH box helicase APLC1_3114 PF08148 DSHCT (NUC185) domain APLC1_3114 PF00271 Helicase conserved C-terminal domain APLC1_3115 PF10396 GTP-binding protein TrmE N-terminus APLC1_3115 PF01926 50S ribosome-binding GTPase APLC1_3115 PF12631 MnmE helical domain APLC1_3117 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APLC1_3118 PF01795 MraW methylase family APLC1_3119 PF01385 Probable transposase APLC1_3119 PF12323 Helix-turn-helix domain APLC1_3119 PF07282 Putative transposase DNA-binding domain APLC1_3120 PF00072 Response regulator receiver domain APLC1_3120 PF02954 Bacterial regulatory protein, Fis family APLC1_3120 PF00158 Sigma-54 interaction domain APLC1_3122 PF08331 Domain of unknown function (DUF1730) APLC1_3127 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system APLC1_3129 PF00183 Hsp90 protein APLC1_3134 PF11791 Aconitate B N-terminal domain APLC1_3134 PF06434 Aconitate hydratase 2 N-terminus APLC1_3134 PF00330 Aconitase family (aconitate hydratase) APLC1_3135 PF13426 PAS domain APLC1_3135 PF00072 Response regulator receiver domain APLC1_3135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3136 PF00563 EAL domain APLC1_3136 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3136 PF03707 Bacterial signalling protein N terminal repeat APLC1_3136 PF13188 PAS domain APLC1_3137 PF13614 AAA domain APLC1_3139 PF18412 Outer-membrane lipoprotein Wza C-terminal domain APLC1_3139 PF10531 SLBB domain APLC1_3139 PF02563 Polysaccharide biosynthesis/export protein APLC1_3140 PF00890 FAD binding domain APLC1_3140 PF04205 FMN-binding domain APLC1_3142 PF18460 Heterocyst differentiation regulator C-terminal Hood domain APLC1_3142 PF03574 Peptidase family S48 APLC1_3143 PF01523 Putative modulator of DNA gyrase APLC1_3144 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APLC1_3145 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3145 PF01590 GAF domain APLC1_3145 PF00563 EAL domain APLC1_3145 PF00360 Phytochrome region APLC1_3146 PF01494 FAD binding domain APLC1_3147 PF01765 Ribosome recycling factor APLC1_3148 PF00696 Amino acid kinase family APLC1_3150 PF12323 Helix-turn-helix domain APLC1_3150 PF01385 Probable transposase APLC1_3150 PF07282 Putative transposase DNA-binding domain APLC1_3151 PF08534 Redoxin APLC1_3152 PF00491 Arginase family APLC1_3153 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_3154 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_3154 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APLC1_3157 PF01593 Flavin containing amine oxidoreductase APLC1_3161 PF03023 Lipid II flippase MurJ APLC1_3163 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APLC1_3164 PF00501 AMP-binding enzyme APLC1_3164 PF13193 AMP-binding enzyme C-terminal domain APLC1_3168 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APLC1_3168 PF00391 PEP-utilising enzyme, mobile domain APLC1_3170 PF01967 MoaC family APLC1_3171 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_3179 PF00534 Glycosyl transferases group 1 APLC1_3179 PF13439 Glycosyltransferase Family 4 APLC1_3180 PF13847 Methyltransferase domain APLC1_3183 PF14245 Type IV pilin PilA APLC1_3183 PF07963 Prokaryotic N-terminal methylation motif APLC1_3192 PF01790 Prolipoprotein diacylglyceryl transferase APLC1_3193 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APLC1_3195 PF02421 Ferrous iron transport protein B APLC1_3195 PF07664 Ferrous iron transport protein B C terminus APLC1_3195 PF07670 Nucleoside recognition APLC1_3196 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3197 PF00072 Response regulator receiver domain APLC1_3197 PF13188 PAS domain APLC1_3197 PF08448 PAS fold APLC1_3197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3197 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3199 PF03853 YjeF-related protein N-terminus APLC1_3199 PF01256 Carbohydrate kinase APLC1_3202 PF03572 Peptidase family S41 APLC1_3202 PF00595 PDZ domain APLC1_3203 PF00475 Imidazoleglycerol-phosphate dehydratase APLC1_3205 PF13545 Crp-like helix-turn-helix domain APLC1_3205 PF00027 Cyclic nucleotide-binding domain APLC1_3207 PF11283 Protein of unknown function (DUF3084) APLC1_3212 PF02463 RecF/RecN/SMC N terminal domain APLC1_3214 PF13180 PDZ domain APLC1_3217 PF07282 Putative transposase DNA-binding domain APLC1_3217 PF01385 Probable transposase APLC1_3217 PF12323 Helix-turn-helix domain APLC1_3218 PF01872 RibD C-terminal domain APLC1_3219 PF12146 Serine aminopeptidase, S33 APLC1_3220 PF00672 HAMP domain APLC1_3220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APLC1_3220 PF02743 Cache domain APLC1_3221 PF02463 RecF/RecN/SMC N terminal domain APLC1_3223 PF01783 Ribosomal L32p protein family APLC1_3224 PF02547 Queuosine biosynthesis protein APLC1_3226 PF02021 Uncharacterised protein family UPF0102 APLC1_3229 PF07282 Putative transposase DNA-binding domain APLC1_3229 PF01385 Probable transposase APLC1_3229 PF12323 Helix-turn-helix domain APLC1_3231 PF00485 Phosphoribulokinase / Uridine kinase family APLC1_3232 PF04483 Protein of unknown function (DUF565) APLC1_3233 PF16582 Middle domain of thiamine pyrophosphate APLC1_3233 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APLC1_3233 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APLC1_3236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APLC1_3236 PF03466 LysR substrate binding domain APLC1_3237 PF02885 Glycosyl transferase family, helical bundle domain APLC1_3237 PF00591 Glycosyl transferase family, a/b domain APLC1_3238 PF00171 Aldehyde dehydrogenase family APLC1_3239 PF00171 Aldehyde dehydrogenase family APLC1_3240 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APLC1_3240 PF01619 Proline dehydrogenase APLC1_3240 PF00171 Aldehyde dehydrogenase family APLC1_3240 PF14850 DNA-binding domain of Proline dehydrogenase APLC1_3243 PF00708 Acylphosphatase APLC1_3244 PF00155 Aminotransferase class I and II APLC1_3245 PF01433 Peptidase family M1 domain APLC1_3245 PF11838 ERAP1-like C-terminal domain APLC1_3258 PF01432 Peptidase family M3 APLC1_3259 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APLC1_3259 PF17768 RecJ OB domain APLC1_3259 PF02272 DHHA1 domain APLC1_3259 PF01368 DHH family APLC1_3260 PF07690 Major Facilitator Superfamily APLC1_3261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3261 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3261 PF00989 PAS fold APLC1_3262 PF13188 PAS domain APLC1_3262 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3262 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3262 PF08448 PAS fold APLC1_3262 PF00072 Response regulator receiver domain APLC1_3263 PF00069 Protein kinase domain APLC1_3263 PF03793 PASTA domain APLC1_3265 PF00535 Glycosyl transferase family 2 APLC1_3272 PF01040 UbiA prenyltransferase family APLC1_3274 PF00912 Transglycosylase APLC1_3274 PF00905 Penicillin binding protein transpeptidase domain APLC1_3276 PF04966 Carbohydrate-selective porin, OprB family APLC1_3276 PF00395 S-layer homology domain APLC1_3277 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_3278 PF01513 ATP-NAD kinase APLC1_3282 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APLC1_3282 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APLC1_3283 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APLC1_3283 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APLC1_3284 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APLC1_3285 PF00202 Aminotransferase class-III APLC1_3314 PF00977 Histidine biosynthesis protein APLC1_3315 PF01235 Sodium:alanine symporter family APLC1_3323 PF03717 Penicillin-binding Protein dimerisation domain APLC1_3323 PF00905 Penicillin binding protein transpeptidase domain APLC1_3325 PF01098 Cell cycle protein APLC1_3328 PF08865 Domain of unknown function (DUF1830) APLC1_3331 PF00005 ABC transporter APLC1_3334 PF02875 Mur ligase family, glutamate ligase domain APLC1_3334 PF01225 Mur ligase family, catalytic domain APLC1_3334 PF08245 Mur ligase middle domain APLC1_3336 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APLC1_3337 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APLC1_3337 PF01926 50S ribosome-binding GTPase APLC1_3338 PF00072 Response regulator receiver domain APLC1_3338 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3342 PF04539 Sigma-70 region 3 APLC1_3342 PF04542 Sigma-70 region 2 APLC1_3342 PF04545 Sigma-70, region 4 APLC1_3342 PF00140 Sigma-70 factor, region 1.2 APLC1_3349 PF00270 DEAD/DEAH box helicase APLC1_3349 PF00271 Helicase conserved C-terminal domain APLC1_3352 PF01593 Flavin containing amine oxidoreductase APLC1_3353 PF00012 Hsp70 protein APLC1_3354 PF00012 Hsp70 protein APLC1_3355 PF01556 DnaJ C terminal domain APLC1_3355 PF00226 DnaJ domain APLC1_3363 PF07963 Prokaryotic N-terminal methylation motif APLC1_3363 PF00114 Pilin (bacterial filament) APLC1_3364 PF12019 Type II transport protein GspH APLC1_3364 PF07963 Prokaryotic N-terminal methylation motif APLC1_3368 PF00206 Lyase APLC1_3368 PF14698 Argininosuccinate lyase C-terminal APLC1_3370 PF07228 Stage II sporulation protein E (SpoIIE) APLC1_3370 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain APLC1_3371 PF02881 SRP54-type protein, helical bundle domain APLC1_3371 PF00448 SRP54-type protein, GTPase domain APLC1_3372 PF01029 NusB family APLC1_3373 PF00106 short chain dehydrogenase APLC1_3374 PF10502 Signal peptidase, peptidase S26 APLC1_3376 PF00300 Histidine phosphatase superfamily (branch 1) APLC1_3377 PF00300 Histidine phosphatase superfamily (branch 1) APLC1_3378 PF08447 PAS fold APLC1_3378 PF13426 PAS domain APLC1_3378 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3378 PF13493 Domain of unknown function (DUF4118) APLC1_3378 PF00989 PAS fold APLC1_3379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3379 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3379 PF00989 PAS fold APLC1_3380 PF00989 PAS fold APLC1_3380 PF00072 Response regulator receiver domain APLC1_3380 PF01627 Hpt domain APLC1_3380 PF18415 Histidine kinase receptor ArcB trans-membrane domain APLC1_3380 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3382 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3382 PF03707 Bacterial signalling protein N terminal repeat APLC1_3382 PF00563 EAL domain APLC1_3385 PF00919 Uncharacterized protein family UPF0004 APLC1_3385 PF04055 Radical SAM superfamily APLC1_3385 PF01938 TRAM domain APLC1_3387 PF00814 Glycoprotease family APLC1_3388 PF02507 Photosystem I reaction centre subunit III APLC1_3389 PF01701 Photosystem I reaction centre subunit IX / PsaJ APLC1_3390 PF00795 Carbon-nitrogen hydrolase APLC1_3391 PF00999 Sodium/hydrogen exchanger family APLC1_3393 PF10369 Small subunit of acetolactate synthase APLC1_3395 PF08241 Methyltransferase domain APLC1_3396 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APLC1_3396 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APLC1_3397 PF00462 Glutaredoxin APLC1_3400 PF13380 CoA binding domain APLC1_3401 PF00005 ABC transporter APLC1_3404 PF09157 Pseudouridine synthase II TruB, C-terminal APLC1_3404 PF01509 TruB family pseudouridylate synthase (N terminal domain) APLC1_3405 PF01809 Putative membrane protein insertion efficiency factor APLC1_3410 PF00963 Cohesin domain APLC1_3410 PF00395 S-layer homology domain APLC1_3414 PF01348 Type II intron maturase APLC1_3414 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3420 PF18766 SWI2/SNF2 ATPase APLC1_3420 PF11867 Domain of unknown function (DUF3387) APLC1_3420 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APLC1_3421 PF12008 Type I restriction and modification enzyme - subunit R C terminal APLC1_3421 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APLC1_3421 PF18766 SWI2/SNF2 ATPase APLC1_3430 PF01797 Transposase IS200 like APLC1_3433 PF01040 UbiA prenyltransferase family APLC1_3434 PF00067 Cytochrome P450 APLC1_3435 PF00425 chorismate binding enzyme APLC1_3436 PF02769 AIR synthase related protein, C-terminal domain APLC1_3436 PF00586 AIR synthase related protein, N-terminal domain APLC1_3437 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APLC1_3437 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APLC1_3438 PF08245 Mur ligase middle domain APLC1_3438 PF02875 Mur ligase family, glutamate ligase domain APLC1_3438 PF01225 Mur ligase family, catalytic domain APLC1_3439 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APLC1_3439 PF01565 FAD binding domain APLC1_3441 PF02575 YbaB/EbfC DNA-binding family APLC1_3442 PF05195 Aminopeptidase P, N-terminal domain APLC1_3442 PF00557 Metallopeptidase family M24 APLC1_3445 PF00654 Voltage gated chloride channel APLC1_3446 PF00072 Response regulator receiver domain APLC1_3446 PF00486 Transcriptional regulatory protein, C terminal APLC1_3447 PF00486 Transcriptional regulatory protein, C terminal APLC1_3447 PF01627 Hpt domain APLC1_3447 PF00072 Response regulator receiver domain APLC1_3449 PF08669 Glycine cleavage T-protein C-terminal barrel domain APLC1_3449 PF01571 Aminomethyltransferase folate-binding domain APLC1_3454 PF02558 Ketopantoate reductase PanE/ApbA APLC1_3454 PF08546 Ketopantoate reductase PanE/ApbA C terminal APLC1_3465 PF00206 Lyase APLC1_3465 PF10415 Fumarase C C-terminus APLC1_3466 PF01668 SmpB protein APLC1_3469 PF04966 Carbohydrate-selective porin, OprB family APLC1_3469 PF00395 S-layer homology domain APLC1_3472 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_3473 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APLC1_3473 PF01676 Metalloenzyme superfamily APLC1_3478 PF02427 Photosystem I reaction centre subunit IV / PsaE APLC1_3479 PF06827 Zinc finger found in FPG and IleRS APLC1_3479 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APLC1_3479 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APLC1_3480 PF11910 Cyanobacterial and plant NDH-1 subunit O APLC1_3481 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APLC1_3481 PF00056 lactate/malate dehydrogenase, NAD binding domain APLC1_3506 PF01348 Type II intron maturase APLC1_3506 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3509 PF00069 Protein kinase domain APLC1_3509 PF00805 Pentapeptide repeats (8 copies) APLC1_3510 PF00069 Protein kinase domain APLC1_3511 PF03781 Sulfatase-modifying factor enzyme 1 APLC1_3512 PF00805 Pentapeptide repeats (8 copies) APLC1_3512 PF00069 Protein kinase domain APLC1_3513 PF00805 Pentapeptide repeats (8 copies) APLC1_3513 PF00069 Protein kinase domain APLC1_3514 PF00805 Pentapeptide repeats (8 copies) APLC1_3514 PF00069 Protein kinase domain APLC1_3517 PF00877 NlpC/P60 family APLC1_3518 PF00069 Protein kinase domain APLC1_3519 PF00069 Protein kinase domain APLC1_3521 PF04055 Radical SAM superfamily APLC1_3523 PF01430 Hsp33 protein APLC1_3527 PF02687 FtsX-like permease family APLC1_3527 PF00005 ABC transporter APLC1_3527 PF12704 MacB-like periplasmic core domain APLC1_3535 PF01926 50S ribosome-binding GTPase APLC1_3535 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APLC1_3537 PF12795 Mechanosensitive ion channel porin domain APLC1_3537 PF00924 Mechanosensitive ion channel APLC1_3537 PF12794 Mechanosensitive ion channel inner membrane domain 1 APLC1_3539 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_3540 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_3544 PF03459 TOBE domain APLC1_3544 PF00005 ABC transporter APLC1_3546 PF13545 Crp-like helix-turn-helix domain APLC1_3547 PF00291 Pyridoxal-phosphate dependent enzyme APLC1_3548 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_3550 PF00266 Aminotransferase class-V APLC1_3552 PF13607 Succinyl-CoA ligase like flavodoxin domain APLC1_3552 PF13380 CoA binding domain APLC1_3552 PF00583 Acetyltransferase (GNAT) family APLC1_3554 PF00762 Ferrochelatase APLC1_3555 PF01384 Phosphate transporter family APLC1_3556 PF01384 Phosphate transporter family APLC1_3557 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3557 PF01348 Type II intron maturase APLC1_3562 PF00395 S-layer homology domain APLC1_3562 PF00963 Cohesin domain APLC1_3563 PF08241 Methyltransferase domain APLC1_3565 PF00343 Carbohydrate phosphorylase APLC1_3568 PF00149 Calcineurin-like phosphoesterase APLC1_3572 PF01734 Patatin-like phospholipase APLC1_3580 PF01209 ubiE/COQ5 methyltransferase family APLC1_3587 PF01027 Inhibitor of apoptosis-promoting Bax1 APLC1_3590 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APLC1_3590 PF18766 SWI2/SNF2 ATPase APLC1_3590 PF11867 Domain of unknown function (DUF3387) APLC1_3593 PF01420 Type I restriction modification DNA specificity domain APLC1_3605 PF02384 N-6 DNA Methylase APLC1_3608 PF00069 Protein kinase domain APLC1_3610 PF00069 Protein kinase domain APLC1_3614 PF03707 Bacterial signalling protein N terminal repeat APLC1_3614 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3614 PF00563 EAL domain APLC1_3615 PF00005 ABC transporter APLC1_3616 PF02361 Cobalt transport protein APLC1_3617 PF02553 Cobalt transport protein component CbiN APLC1_3618 PF01891 Cobalt uptake substrate-specific transmembrane region APLC1_3620 PF00535 Glycosyl transferase family 2 APLC1_3622 PF00764 Arginosuccinate synthase APLC1_3624 PF01488 Shikimate / quinate 5-dehydrogenase APLC1_3629 PF11266 Long-chain fatty aldehyde decarbonylase APLC1_3630 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_3632 PF00534 Glycosyl transferases group 1 APLC1_3632 PF13439 Glycosyltransferase Family 4 APLC1_3633 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_3634 PF00465 Iron-containing alcohol dehydrogenase APLC1_3634 PF00171 Aldehyde dehydrogenase family APLC1_3635 PF00361 Proton-conducting membrane transporter APLC1_3636 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APLC1_3637 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APLC1_3637 PF00361 Proton-conducting membrane transporter APLC1_3643 PF03109 ABC1 family APLC1_3648 PF00982 Glycosyltransferase family 20 APLC1_3649 PF01266 FAD dependent oxidoreductase APLC1_3649 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APLC1_3650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APLC1_3650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APLC1_3651 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3651 PF08447 PAS fold APLC1_3651 PF08448 PAS fold APLC1_3652 PF00672 HAMP domain APLC1_3652 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3652 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_3652 PF00072 Response regulator receiver domain APLC1_3652 PF01627 Hpt domain APLC1_3652 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3655 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3655 PF01590 GAF domain APLC1_3655 PF00563 EAL domain APLC1_3655 PF00360 Phytochrome region APLC1_3661 PF00672 HAMP domain APLC1_3661 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_3664 PF08443 RimK-like ATP-grasp domain APLC1_3664 PF18030 RimK PreATP-grasp domain APLC1_3668 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_3670 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_3672 PF00224 Pyruvate kinase, barrel domain APLC1_3672 PF02887 Pyruvate kinase, alpha/beta domain APLC1_3673 PF00772 DnaB-like helicase N terminal domain APLC1_3673 PF14528 LAGLIDADG-like domain APLC1_3673 PF03796 DnaB-like helicase C terminal domain APLC1_3674 PF03948 Ribosomal protein L9, C-terminal domain APLC1_3674 PF01281 Ribosomal protein L9, N-terminal domain APLC1_3675 PF00005 ABC transporter APLC1_3676 PF02254 TrkA-N domain APLC1_3676 PF02080 TrkA-C domain APLC1_3678 PF13732 Domain of unknown function (DUF4162) APLC1_3678 PF00005 ABC transporter APLC1_3679 PF01467 Cytidylyltransferase-like APLC1_3683 PF00032 Cytochrome b(C-terminal)/b6/petD APLC1_3684 PF00033 Cytochrome b/b6/petB APLC1_3690 PF00107 Zinc-binding dehydrogenase APLC1_3690 PF08240 Alcohol dehydrogenase GroES-like domain APLC1_3691 PF00107 Zinc-binding dehydrogenase APLC1_3691 PF08240 Alcohol dehydrogenase GroES-like domain APLC1_3692 PF00145 C-5 cytosine-specific DNA methylase APLC1_3693 PF00860 Permease family APLC1_3694 PF01590 GAF domain APLC1_3695 PF01594 AI-2E family transporter APLC1_3696 PF00892 EamA-like transporter family APLC1_3697 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APLC1_3697 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APLC1_3697 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APLC1_3697 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APLC1_3699 PF01227 GTP cyclohydrolase I APLC1_3700 PF00106 short chain dehydrogenase APLC1_3701 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APLC1_3702 PF01475 Ferric uptake regulator family APLC1_3703 PF08534 Redoxin APLC1_3704 PF00069 Protein kinase domain APLC1_3708 PF00069 Protein kinase domain APLC1_3708 PF03793 PASTA domain APLC1_3712 PF03109 ABC1 family APLC1_3715 PF03702 Anhydro-N-acetylmuramic acid kinase APLC1_3716 PF03702 Anhydro-N-acetylmuramic acid kinase APLC1_3718 PF00271 Helicase conserved C-terminal domain APLC1_3718 PF03880 DbpA RNA binding domain APLC1_3718 PF00270 DEAD/DEAH box helicase APLC1_3721 PF00365 Phosphofructokinase APLC1_3722 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APLC1_3723 PF01471 Putative peptidoglycan binding domain APLC1_3723 PF07486 Cell Wall Hydrolase APLC1_3724 PF02844 Phosphoribosylglycinamide synthetase, N domain APLC1_3724 PF02843 Phosphoribosylglycinamide synthetase, C domain APLC1_3724 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APLC1_3725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3725 PF00672 HAMP domain APLC1_3725 PF00989 PAS fold APLC1_3725 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3726 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APLC1_3726 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APLC1_3726 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APLC1_3726 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APLC1_3727 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APLC1_3727 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APLC1_3727 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APLC1_3727 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APLC1_3736 PF12697 Alpha/beta hydrolase family APLC1_3737 PF00805 Pentapeptide repeats (8 copies) APLC1_3737 PF00069 Protein kinase domain APLC1_3738 PF00174 Oxidoreductase molybdopterin binding domain APLC1_3747 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3747 PF01348 Type II intron maturase APLC1_3751 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3751 PF01348 Type II intron maturase APLC1_3755 PF01348 Type II intron maturase APLC1_3755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3758 PF13460 NAD(P)H-binding APLC1_3772 PF00664 ABC transporter transmembrane region APLC1_3772 PF00005 ABC transporter APLC1_3774 PF00534 Glycosyl transferases group 1 APLC1_3777 PF00535 Glycosyl transferase family 2 APLC1_3778 PF00085 Thioredoxin APLC1_3780 PF00118 TCP-1/cpn60 chaperonin family APLC1_3781 PF00072 Response regulator receiver domain APLC1_3781 PF00486 Transcriptional regulatory protein, C terminal APLC1_3782 PF13426 PAS domain APLC1_3782 PF00072 Response regulator receiver domain APLC1_3782 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3782 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3782 PF08448 PAS fold APLC1_3783 PF12282 Signal transduction histidine kinase APLC1_3783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3783 PF07568 Histidine kinase APLC1_3786 PF00035 Double-stranded RNA binding motif APLC1_3786 PF14622 Ribonuclease-III-like APLC1_3787 PF00092 von Willebrand factor type A domain APLC1_3789 PF00563 EAL domain APLC1_3789 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3789 PF01590 GAF domain APLC1_3789 PF00360 Phytochrome region APLC1_3794 PF00672 HAMP domain APLC1_3794 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APLC1_3794 PF02743 Cache domain APLC1_3795 PF00348 Polyprenyl synthetase APLC1_3800 PF04055 Radical SAM superfamily APLC1_3801 PF01253 Translation initiation factor SUI1 APLC1_3806 PF02578 Multi-copper polyphenol oxidoreductase laccase APLC1_3807 PF02237 Biotin protein ligase C terminal domain APLC1_3807 PF03099 Biotin/lipoate A/B protein ligase family APLC1_3807 PF03309 Type III pantothenate kinase APLC1_3808 PF01551 Peptidase family M23 APLC1_3808 PF04225 Opacity-associated protein A LysM-like domain APLC1_3813 PF01451 Low molecular weight phosphotyrosine protein phosphatase APLC1_3814 PF00072 Response regulator receiver domain APLC1_3814 PF00486 Transcriptional regulatory protein, C terminal APLC1_3820 PF01797 Transposase IS200 like APLC1_3821 PF12323 Helix-turn-helix domain APLC1_3821 PF01385 Probable transposase APLC1_3821 PF07282 Putative transposase DNA-binding domain APLC1_3822 PF07282 Putative transposase DNA-binding domain APLC1_3822 PF12323 Helix-turn-helix domain APLC1_3822 PF01385 Probable transposase APLC1_3823 PF00497 Bacterial extracellular solute-binding proteins, family 3 APLC1_3829 PF01928 CYTH domain APLC1_3830 PF09150 Orange carotenoid protein, N-terminal APLC1_3830 PF02136 Nuclear transport factor 2 (NTF2) domain APLC1_3831 PF18032 Photoprotection regulator fluorescence recovery protein APLC1_3832 PF00294 pfkB family carbohydrate kinase APLC1_3833 PF00196 Bacterial regulatory proteins, luxR family APLC1_3833 PF00072 Response regulator receiver domain APLC1_3835 PF03129 Anticodon binding domain APLC1_3835 PF13393 Histidyl-tRNA synthetase APLC1_3837 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APLC1_3837 PF00400 WD domain, G-beta repeat APLC1_3837 PF00400 WD domain, G-beta repeat APLC1_3837 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APLC1_3840 PF08478 POTRA domain, FtsQ-type APLC1_3840 PF03799 Cell division protein FtsQ APLC1_3841 PF00091 Tubulin/FtsZ family, GTPase domain APLC1_3841 PF12327 FtsZ family, C-terminal domain APLC1_3843 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APLC1_3843 PF00400 WD domain, G-beta repeat APLC1_3846 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APLC1_3846 PF00400 WD domain, G-beta repeat APLC1_3849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3849 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3853 PF00805 Pentapeptide repeats (8 copies) APLC1_3853 PF00069 Protein kinase domain APLC1_3854 PF01588 Putative tRNA binding domain APLC1_3854 PF03147 Ferredoxin-fold anticodon binding domain APLC1_3854 PF03484 tRNA synthetase B5 domain APLC1_3854 PF03483 B3/4 domain APLC1_3854 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APLC1_3863 PF01975 Survival protein SurE APLC1_3866 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APLC1_3866 PF01409 tRNA synthetases class II core domain (F) APLC1_3870 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APLC1_3872 PF02504 Fatty acid synthesis protein APLC1_3873 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APLC1_3873 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APLC1_3874 PF00698 Acyl transferase domain APLC1_3875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_3875 PF00672 HAMP domain APLC1_3875 PF00512 His Kinase A (phospho-acceptor) domain APLC1_3875 PF13426 PAS domain APLC1_3883 PF01348 Type II intron maturase APLC1_3883 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3890 PF13358 DDE superfamily endonuclease APLC1_3899 PF00719 Inorganic pyrophosphatase APLC1_3902 PF02261 Aspartate decarboxylase APLC1_3905 PF13358 DDE superfamily endonuclease APLC1_3914 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_3918 PF13545 Crp-like helix-turn-helix domain APLC1_3918 PF00027 Cyclic nucleotide-binding domain APLC1_3928 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3928 PF01348 Type II intron maturase APLC1_3940 PF03129 Anticodon binding domain APLC1_3940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APLC1_3940 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APLC1_3941 PF03129 Anticodon binding domain APLC1_3941 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APLC1_3941 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APLC1_3942 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APLC1_3942 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APLC1_3942 PF03129 Anticodon binding domain APLC1_3948 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_3948 PF01348 Type II intron maturase APLC1_3950 PF10792 Protein of unknown function (DUF2605) APLC1_3961 PF12706 Beta-lactamase superfamily domain APLC1_3963 PF01926 50S ribosome-binding GTPase APLC1_3963 PF12631 MnmE helical domain APLC1_3963 PF10396 GTP-binding protein TrmE N-terminus APLC1_3964 PF00155 Aminotransferase class I and II APLC1_3965 PF17676 LD-carboxypeptidase C-terminal domain APLC1_3965 PF02016 LD-carboxypeptidase N-terminal domain APLC1_3966 PF02567 Phenazine biosynthesis-like protein APLC1_3967 PF04715 Anthranilate synthase component I, N terminal region APLC1_3967 PF00425 chorismate binding enzyme APLC1_3968 PF02531 PsaD APLC1_3977 PF13580 SIS domain APLC1_3978 PF01774 UreD urease accessory protein APLC1_3979 PF00547 Urease, gamma subunit APLC1_3980 PF00699 Urease beta subunit APLC1_3981 PF01979 Amidohydrolase family APLC1_3981 PF00449 Urease alpha-subunit, N-terminal domain APLC1_3982 PF01979 Amidohydrolase family APLC1_3982 PF00449 Urease alpha-subunit, N-terminal domain APLC1_3983 PF00990 Diguanylate cyclase, GGDEF domain APLC1_3987 PF02638 Glycosyl hydrolase-like 10 APLC1_3988 PF00497 Bacterial extracellular solute-binding proteins, family 3 APLC1_3989 PF00375 Sodium:dicarboxylate symporter family APLC1_3990 PF01177 Asp/Glu/Hydantoin racemase APLC1_4002 PF00478 IMP dehydrogenase / GMP reductase domain APLC1_4004 PF00085 Thioredoxin APLC1_4006 PF00072 Response regulator receiver domain APLC1_4006 PF00486 Transcriptional regulatory protein, C terminal APLC1_4007 PF01634 ATP phosphoribosyltransferase APLC1_4010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APLC1_4011 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APLC1_4012 PF02570 Precorrin-8X methylmutase APLC1_4013 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APLC1_4013 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APLC1_4014 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APLC1_4014 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APLC1_4015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APLC1_4016 PF02571 Precorrin-6x reductase CbiJ/CobK APLC1_4017 PF00202 Aminotransferase class-III APLC1_4018 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APLC1_4018 PF01502 Phosphoribosyl-AMP cyclohydrolase APLC1_4020 PF00072 Response regulator receiver domain APLC1_4020 PF00486 Transcriptional regulatory protein, C terminal APLC1_4024 PF14403 Circularly permuted ATP-grasp type 2 APLC1_4026 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APLC1_4026 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APLC1_4030 PF00664 ABC transporter transmembrane region APLC1_4030 PF00005 ABC transporter APLC1_4032 PF00012 Hsp70 protein APLC1_4033 PF00149 Calcineurin-like phosphoesterase APLC1_4034 PF00149 Calcineurin-like phosphoesterase APLC1_4036 PF01081 KDPG and KHG aldolase APLC1_4037 PF13409 Glutathione S-transferase, N-terminal domain APLC1_4038 PF01555 DNA methylase APLC1_4043 PF00762 Ferrochelatase APLC1_4044 PF02542 YgbB family APLC1_4047 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APLC1_4048 PF00731 AIR carboxylase APLC1_4060 PF00158 Sigma-54 interaction domain APLC1_4060 PF00072 Response regulator receiver domain APLC1_4060 PF02954 Bacterial regulatory protein, Fis family APLC1_4061 PF00360 Phytochrome region APLC1_4061 PF00563 EAL domain APLC1_4061 PF01590 GAF domain APLC1_4061 PF00990 Diguanylate cyclase, GGDEF domain APLC1_4062 PF08448 PAS fold APLC1_4062 PF13426 PAS domain APLC1_4062 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4062 PF00072 Response regulator receiver domain APLC1_4062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4065 PF13358 DDE superfamily endonuclease APLC1_4074 PF07282 Putative transposase DNA-binding domain APLC1_4074 PF01385 Probable transposase APLC1_4074 PF12323 Helix-turn-helix domain APLC1_4078 PF10716 NADH dehydrogenase transmembrane subunit APLC1_4080 PF00290 Tryptophan synthase alpha chain APLC1_4083 PF00248 Aldo/keto reductase family APLC1_4090 PF00291 Pyridoxal-phosphate dependent enzyme APLC1_4090 PF00571 CBS domain APLC1_4091 PF00578 AhpC/TSA family APLC1_4091 PF10417 C-terminal domain of 1-Cys peroxiredoxin APLC1_4092 PF02401 LytB protein APLC1_4093 PF02401 LytB protein APLC1_4094 PF00183 Hsp90 protein APLC1_4095 PF10431 C-terminal, D2-small domain, of ClpB protein APLC1_4095 PF17871 AAA lid domain APLC1_4095 PF07724 AAA domain (Cdc48 subfamily) APLC1_4095 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_4095 PF02861 Clp amino terminal domain, pathogenicity island component APLC1_4096 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APLC1_4100 PF03069 Acetamidase/Formamidase family APLC1_4104 PF01546 Peptidase family M20/M25/M40 APLC1_4104 PF07687 Peptidase dimerisation domain APLC1_4105 PF07687 Peptidase dimerisation domain APLC1_4105 PF01546 Peptidase family M20/M25/M40 APLC1_4106 PF00128 Alpha amylase, catalytic domain APLC1_4106 PF02903 Alpha amylase, N-terminal ig-like domain APLC1_4106 PF16657 Maltogenic Amylase, C-terminal domain APLC1_4107 PF05121 Gas vesicle protein K APLC1_4107 PF00741 Gas vesicle protein APLC1_4108 PF06386 Gas vesicle synthesis protein GvpL/GvpF APLC1_4120 PF08402 TOBE domain APLC1_4120 PF00005 ABC transporter APLC1_4121 PF13416 Bacterial extracellular solute-binding protein APLC1_4123 PF00082 Subtilase family APLC1_4125 PF01145 SPFH domain / Band 7 family APLC1_4127 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APLC1_4128 PF01625 Peptide methionine sulfoxide reductase APLC1_4129 PF00069 Protein kinase domain APLC1_4129 PF03793 PASTA domain APLC1_4132 PF01048 Phosphorylase superfamily APLC1_4133 PF01048 Phosphorylase superfamily APLC1_4136 PF01709 Transcriptional regulator APLC1_4138 PF00924 Mechanosensitive ion channel APLC1_4138 PF12795 Mechanosensitive ion channel porin domain APLC1_4138 PF12794 Mechanosensitive ion channel inner membrane domain 1 APLC1_4144 PF12323 Helix-turn-helix domain APLC1_4144 PF07282 Putative transposase DNA-binding domain APLC1_4144 PF01385 Probable transposase APLC1_4152 PF00924 Mechanosensitive ion channel APLC1_4153 PF00312 Ribosomal protein S15 APLC1_4156 PF00793 DAHP synthetase I family APLC1_4156 PF18152 DAHP synthase ferredoxin-like domain APLC1_4158 PF03734 L,D-transpeptidase catalytic domain APLC1_4158 PF01476 LysM domain APLC1_4159 PF03109 ABC1 family APLC1_4162 PF00805 Pentapeptide repeats (8 copies) APLC1_4162 PF00069 Protein kinase domain APLC1_4174 PF10664 Cyanobacterial and plastid NDH-1 subunit M APLC1_4181 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APLC1_4181 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APLC1_4189 PF00551 Formyl transferase APLC1_4189 PF01842 ACT domain APLC1_4192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4192 PF00672 HAMP domain APLC1_4192 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4193 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4193 PF07689 KaiB domain APLC1_4200 PF13533 Biotin-lipoyl like APLC1_4201 PF02687 FtsX-like permease family APLC1_4201 PF12704 MacB-like periplasmic core domain APLC1_4201 PF00005 ABC transporter APLC1_4202 PF02687 FtsX-like permease family APLC1_4202 PF12704 MacB-like periplasmic core domain APLC1_4202 PF00005 ABC transporter APLC1_4204 PF00849 RNA pseudouridylate synthase APLC1_4204 PF01479 S4 domain APLC1_4206 PF07724 AAA domain (Cdc48 subfamily) APLC1_4206 PF10431 C-terminal, D2-small domain, of ClpB protein APLC1_4206 PF06689 ClpX C4-type zinc finger APLC1_4210 PF00781 Diacylglycerol kinase catalytic domain APLC1_4211 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system APLC1_4212 PF00343 Carbohydrate phosphorylase APLC1_4213 PF00343 Carbohydrate phosphorylase APLC1_4214 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APLC1_4214 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APLC1_4215 PF01042 Endoribonuclease L-PSP APLC1_4216 PF01042 Endoribonuclease L-PSP APLC1_4218 PF01042 Endoribonuclease L-PSP APLC1_4221 PF01368 DHH family APLC1_4221 PF02272 DHHA1 domain APLC1_4221 PF17768 RecJ OB domain APLC1_4221 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APLC1_4226 PF00472 RF-1 domain APLC1_4226 PF03462 PCRF domain APLC1_4232 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APLC1_4232 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APLC1_4232 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APLC1_4232 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APLC1_4233 PF13847 Methyltransferase domain APLC1_4234 PF17158 Membrane-associated sensor, integral membrane domain APLC1_4234 PF00990 Diguanylate cyclase, GGDEF domain APLC1_4235 PF13326 Photosystem II Pbs27 APLC1_4239 PF16326 ABC transporter C-terminal domain APLC1_4239 PF00005 ABC transporter APLC1_4239 PF12848 ABC transporter APLC1_4241 PF09308 LuxQ, periplasmic APLC1_4241 PF00072 Response regulator receiver domain APLC1_4241 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4241 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4242 PF01207 Dihydrouridine synthase (Dus) APLC1_4243 PF01207 Dihydrouridine synthase (Dus) APLC1_4246 PF00565 Staphylococcal nuclease homologue APLC1_4248 PF01507 Phosphoadenosine phosphosulfate reductase family APLC1_4261 PF01636 Phosphotransferase enzyme family APLC1_4263 PF00535 Glycosyl transferase family 2 APLC1_4265 PF12965 Domain of unknown function (DUF3854) APLC1_4268 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_4268 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APLC1_4269 PF01926 50S ribosome-binding GTPase APLC1_4270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4270 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4270 PF09308 LuxQ, periplasmic APLC1_4270 PF00072 Response regulator receiver domain APLC1_4271 PF00162 Phosphoglycerate kinase APLC1_4272 PF00582 Universal stress protein family APLC1_4274 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APLC1_4274 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APLC1_4275 PF00348 Polyprenyl synthetase APLC1_4278 PF10674 Protein of unknown function (DUF2488) APLC1_4279 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APLC1_4285 PF01467 Cytidylyltransferase-like APLC1_4286 PF00437 Type II/IV secretion system protein APLC1_4287 PF01479 S4 domain APLC1_4287 PF00579 tRNA synthetases class I (W and Y) APLC1_4288 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APLC1_4289 PF00005 ABC transporter APLC1_4289 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APLC1_4297 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_4302 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APLC1_4302 PF00925 GTP cyclohydrolase II APLC1_4303 PF01241 Photosystem I psaG / psaK APLC1_4304 PF00571 CBS domain APLC1_4304 PF02163 Peptidase family M50 APLC1_4305 PF03099 Biotin/lipoate A/B protein ligase family APLC1_4309 PF01209 ubiE/COQ5 methyltransferase family APLC1_4310 PF01385 Probable transposase APLC1_4310 PF07282 Putative transposase DNA-binding domain APLC1_4310 PF12323 Helix-turn-helix domain APLC1_4313 PF00120 Glutamine synthetase, catalytic domain APLC1_4313 PF03951 Glutamine synthetase, beta-Grasp domain APLC1_4314 PF00502 Phycobilisome protein APLC1_4316 PF00145 C-5 cytosine-specific DNA methylase APLC1_4317 PF01728 FtsJ-like methyltransferase APLC1_4317 PF01479 S4 domain APLC1_4322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4322 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4329 PF01523 Putative modulator of DNA gyrase APLC1_4331 PF04011 LemA family APLC1_4332 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APLC1_4332 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APLC1_4336 PF00005 ABC transporter APLC1_4357 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APLC1_4357 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APLC1_4358 PF01207 Dihydrouridine synthase (Dus) APLC1_4367 PF13180 PDZ domain APLC1_4370 PF01551 Peptidase family M23 APLC1_4370 PF01476 LysM domain APLC1_4372 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4372 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_4372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4372 PF00672 HAMP domain APLC1_4372 PF01627 Hpt domain APLC1_4372 PF00072 Response regulator receiver domain APLC1_4383 PF18030 RimK PreATP-grasp domain APLC1_4383 PF08443 RimK-like ATP-grasp domain APLC1_4384 PF05151 Photosystem II reaction centre M protein (PsbM) APLC1_4385 PF00155 Aminotransferase class I and II APLC1_4386 PF00465 Iron-containing alcohol dehydrogenase APLC1_4387 PF13439 Glycosyltransferase Family 4 APLC1_4387 PF00534 Glycosyl transferases group 1 APLC1_4390 PF00483 Nucleotidyl transferase APLC1_4391 PF04321 RmlD substrate binding domain APLC1_4392 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APLC1_4395 PF03412 Peptidase C39 family APLC1_4395 PF00664 ABC transporter transmembrane region APLC1_4395 PF00005 ABC transporter APLC1_4398 PF00535 Glycosyl transferase family 2 APLC1_4400 PF12697 Alpha/beta hydrolase family APLC1_4402 PF01022 Bacterial regulatory protein, arsR family APLC1_4403 PF00741 Gas vesicle protein APLC1_4404 PF07728 AAA domain (dynein-related subfamily) APLC1_4406 PF00741 Gas vesicle protein APLC1_4409 PF00741 Gas vesicle protein APLC1_4412 PF00741 Gas vesicle protein APLC1_4415 PF00741 Gas vesicle protein APLC1_4419 PF00741 Gas vesicle protein APLC1_4421 PF13358 DDE superfamily endonuclease APLC1_4429 PF00486 Transcriptional regulatory protein, C terminal APLC1_4429 PF00072 Response regulator receiver domain APLC1_4431 PF00962 Adenosine/AMP deaminase APLC1_4432 PF06832 Penicillin-Binding Protein C-terminus Family APLC1_4432 PF00912 Transglycosylase APLC1_4432 PF00905 Penicillin binding protein transpeptidase domain APLC1_4434 PF00890 FAD binding domain APLC1_4434 PF02910 Fumarate reductase flavoprotein C-term APLC1_4435 PF00890 FAD binding domain APLC1_4435 PF02910 Fumarate reductase flavoprotein C-term APLC1_4436 PF03775 Septum formation inhibitor MinC, C-terminal domain APLC1_4437 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APLC1_4438 PF03776 Septum formation topological specificity factor MinE APLC1_4442 PF01844 HNH endonuclease APLC1_4444 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system APLC1_4447 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APLC1_4447 PF02874 ATP synthase alpha/beta family, beta-barrel domain APLC1_4448 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APLC1_4448 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APLC1_4449 PF00012 Hsp70 protein APLC1_4450 PF00012 Hsp70 protein APLC1_4452 PF13090 Polyphosphate kinase C-terminal domain 2 APLC1_4452 PF02503 Polyphosphate kinase middle domain APLC1_4452 PF17941 Polyphosphate kinase C-terminal domain 1 APLC1_4452 PF13089 Polyphosphate kinase N-terminal domain APLC1_4453 PF00421 Photosystem II protein APLC1_4455 PF00124 Photosynthetic reaction centre protein APLC1_4456 PF02392 Ycf4 APLC1_4457 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APLC1_4458 PF16197 Ketoacyl-synthetase C-terminal extension APLC1_4458 PF02801 Beta-ketoacyl synthase, C-terminal domain APLC1_4458 PF00550 Phosphopantetheine attachment site APLC1_4458 PF00698 Acyl transferase domain APLC1_4458 PF00975 Thioesterase domain APLC1_4458 PF00109 Beta-ketoacyl synthase, N-terminal domain APLC1_4458 PF08990 Erythronolide synthase docking APLC1_4459 PF00145 C-5 cytosine-specific DNA methylase APLC1_4461 PF02163 Peptidase family M50 APLC1_4461 PF13180 PDZ domain APLC1_4462 PF00730 HhH-GPD superfamily base excision DNA repair protein APLC1_4462 PF00633 Helix-hairpin-helix motif APLC1_4463 PF00253 Ribosomal protein S14p/S29e APLC1_4466 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APLC1_4467 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APLC1_4469 PF00563 EAL domain APLC1_4469 PF00990 Diguanylate cyclase, GGDEF domain APLC1_4469 PF03707 Bacterial signalling protein N terminal repeat APLC1_4472 PF07884 Vitamin K epoxide reductase family APLC1_4473 PF03437 BtpA family APLC1_4479 PF12323 Helix-turn-helix domain APLC1_4479 PF01385 Probable transposase APLC1_4479 PF07282 Putative transposase DNA-binding domain APLC1_4485 PF00535 Glycosyl transferase family 2 APLC1_4488 PF00005 ABC transporter APLC1_4492 PF03699 Uncharacterised protein family (UPF0182) APLC1_4493 PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N APLC1_4496 PF01739 CheR methyltransferase, SAM binding domain APLC1_4498 PF00672 HAMP domain APLC1_4498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APLC1_4498 PF12729 Four helix bundle sensory module for signal transduction APLC1_4499 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APLC1_4499 PF05227 CHASE3 domain APLC1_4499 PF00672 HAMP domain APLC1_4500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4500 PF00072 Response regulator receiver domain APLC1_4500 PF02895 Signal transducing histidine kinase, homodimeric domain APLC1_4500 PF01584 CheW-like domain APLC1_4500 PF01627 Hpt domain APLC1_4501 PF01339 CheB methylesterase APLC1_4501 PF00072 Response regulator receiver domain APLC1_4502 PF00486 Transcriptional regulatory protein, C terminal APLC1_4502 PF00072 Response regulator receiver domain APLC1_4503 PF13419 Haloacid dehalogenase-like hydrolase APLC1_4504 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_4504 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APLC1_4504 PF00403 Heavy-metal-associated domain APLC1_4506 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APLC1_4506 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APLC1_4507 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APLC1_4508 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APLC1_4512 PF03773 Predicted permease APLC1_4513 PF00696 Amino acid kinase family APLC1_4513 PF13840 ACT domain APLC1_4516 PF13358 DDE superfamily endonuclease APLC1_4538 PF09827 CRISPR associated protein Cas2 APLC1_4540 PF01867 CRISPR associated protein Cas1 APLC1_4550 PF00749 tRNA synthetases class I (E and Q), catalytic domain APLC1_4551 PF08264 Anticodon-binding domain of tRNA APLC1_4551 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase APLC1_4551 PF00133 tRNA synthetases class I (I, L, M and V) APLC1_4551 PF10458 Valyl tRNA synthetase tRNA binding arm APLC1_4553 PF01625 Peptide methionine sulfoxide reductase APLC1_4554 PF00106 short chain dehydrogenase APLC1_4555 PF00672 HAMP domain APLC1_4555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4555 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_4555 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4555 PF00072 Response regulator receiver domain APLC1_4555 PF01627 Hpt domain APLC1_4556 PF00107 Zinc-binding dehydrogenase APLC1_4556 PF08240 Alcohol dehydrogenase GroES-like domain APLC1_4559 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APLC1_4559 PF01926 50S ribosome-binding GTPase APLC1_4560 PF08338 Domain of unknown function (DUF1731) APLC1_4560 PF01370 NAD dependent epimerase/dehydratase family APLC1_4562 PF00534 Glycosyl transferases group 1 APLC1_4562 PF13579 Glycosyl transferase 4-like domain APLC1_4572 PF02560 Cyanate lyase C-terminal domain APLC1_4575 PF00005 ABC transporter APLC1_4576 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_4577 PF00005 ABC transporter APLC1_4597 PF04434 SWIM zinc finger APLC1_4600 PF04055 Radical SAM superfamily APLC1_4601 PF04055 Radical SAM superfamily APLC1_4603 PF00072 Response regulator receiver domain APLC1_4604 PF01467 Cytidylyltransferase-like APLC1_4604 PF00294 pfkB family carbohydrate kinase APLC1_4606 PF00425 chorismate binding enzyme APLC1_4606 PF04715 Anthranilate synthase component I, N terminal region APLC1_4608 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) APLC1_4610 PF00360 Phytochrome region APLC1_4610 PF00563 EAL domain APLC1_4610 PF01590 GAF domain APLC1_4610 PF00990 Diguanylate cyclase, GGDEF domain APLC1_4612 PF00990 Diguanylate cyclase, GGDEF domain APLC1_4612 PF03707 Bacterial signalling protein N terminal repeat APLC1_4612 PF00563 EAL domain APLC1_4613 PF00072 Response regulator receiver domain APLC1_4617 PF03061 Thioesterase superfamily APLC1_4618 PF00582 Universal stress protein family APLC1_4619 PF02774 Semialdehyde dehydrogenase, dimerisation domain APLC1_4619 PF01118 Semialdehyde dehydrogenase, NAD binding domain APLC1_4623 PF00535 Glycosyl transferase family 2 APLC1_4623 PF13181 Tetratricopeptide repeat APLC1_4635 PF02743 Cache domain APLC1_4635 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_4635 PF00672 HAMP domain APLC1_4636 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_4636 PF00072 Response regulator receiver domain APLC1_4646 PF03209 PUCC protein APLC1_4647 PF12697 Alpha/beta hydrolase family APLC1_4649 PF16123 Hydroxyacylglutathione hydrolase C-terminus APLC1_4649 PF00753 Metallo-beta-lactamase superfamily APLC1_4650 PF16123 Hydroxyacylglutathione hydrolase C-terminus APLC1_4650 PF00753 Metallo-beta-lactamase superfamily APLC1_4651 PF00488 MutS domain V APLC1_4651 PF05188 MutS domain II APLC1_4651 PF05192 MutS domain III APLC1_4651 PF01624 MutS domain I APLC1_4651 PF05190 MutS family domain IV APLC1_4658 PF12697 Alpha/beta hydrolase family APLC1_4660 PF00482 Type II secretion system (T2SS), protein F APLC1_4661 PF00437 Type II/IV secretion system protein APLC1_4662 PF00437 Type II/IV secretion system protein APLC1_4662 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APLC1_4663 PF01025 GrpE APLC1_4664 PF00012 Hsp70 protein APLC1_4665 PF00226 DnaJ domain APLC1_4665 PF00684 DnaJ central domain APLC1_4665 PF01556 DnaJ C terminal domain APLC1_4667 PF03193 RsgA GTPase APLC1_4669 PF01568 Molydopterin dinucleotide binding domain APLC1_4669 PF00384 Molybdopterin oxidoreductase APLC1_4669 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APLC1_4670 PF07690 Major Facilitator Superfamily APLC1_4671 PF07690 Major Facilitator Superfamily APLC1_4672 PF07690 Major Facilitator Superfamily APLC1_4675 PF07969 Amidohydrolase family APLC1_4676 PF07969 Amidohydrolase family APLC1_4677 PF02563 Polysaccharide biosynthesis/export protein APLC1_4677 PF10531 SLBB domain APLC1_4677 PF18412 Outer-membrane lipoprotein Wza C-terminal domain APLC1_4679 PF13614 AAA domain APLC1_4686 PF13439 Glycosyltransferase Family 4 APLC1_4686 PF00534 Glycosyl transferases group 1 APLC1_4694 PF00690 Cation transporter/ATPase, N-terminus APLC1_4694 PF00689 Cation transporting ATPase, C-terminus APLC1_4723 PF00266 Aminotransferase class-V APLC1_4724 PF01458 Uncharacterized protein family (UPF0051) APLC1_4725 PF01458 Uncharacterized protein family (UPF0051) APLC1_4726 PF00005 ABC transporter APLC1_4727 PF01458 Uncharacterized protein family (UPF0051) APLC1_4731 PF05491 RuvB C-terminal winged helix domain APLC1_4731 PF05496 Holliday junction DNA helicase RuvB P-loop domain APLC1_4731 PF17864 RuvB AAA lid domain APLC1_4733 PF00480 ROK family APLC1_4745 PF03447 Homoserine dehydrogenase, NAD binding domain APLC1_4745 PF00742 Homoserine dehydrogenase APLC1_4745 PF01842 ACT domain APLC1_4746 PF01842 ACT domain APLC1_4746 PF00742 Homoserine dehydrogenase APLC1_4746 PF03447 Homoserine dehydrogenase, NAD binding domain APLC1_4747 PF13180 PDZ domain APLC1_4748 PF11378 Protein of unknown function (DUF3181) APLC1_4750 PF03631 Virulence factor BrkB APLC1_4754 PF01297 Zinc-uptake complex component A periplasmic APLC1_4754 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment APLC1_4755 PF00005 ABC transporter APLC1_4756 PF00950 ABC 3 transport family APLC1_4757 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_4757 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APLC1_4764 PF00684 DnaJ central domain APLC1_4764 PF01556 DnaJ C terminal domain APLC1_4764 PF00226 DnaJ domain APLC1_4766 PF01255 Putative undecaprenyl diphosphate synthase APLC1_4767 PF02457 DisA bacterial checkpoint controller nucleotide-binding APLC1_4768 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APLC1_4768 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APLC1_4770 PF10431 C-terminal, D2-small domain, of ClpB protein APLC1_4770 PF17871 AAA lid domain APLC1_4770 PF07724 AAA domain (Cdc48 subfamily) APLC1_4770 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_4770 PF02861 Clp amino terminal domain, pathogenicity island component APLC1_4772 PF02597 ThiS family APLC1_4773 PF00291 Pyridoxal-phosphate dependent enzyme APLC1_4774 PF00883 Cytosol aminopeptidase family, catalytic domain APLC1_4774 PF02789 Cytosol aminopeptidase family, N-terminal domain APLC1_4775 PF08448 PAS fold APLC1_4775 PF08447 PAS fold APLC1_4775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4777 PF00293 NUDIX domain APLC1_4783 PF07687 Peptidase dimerisation domain APLC1_4783 PF01546 Peptidase family M20/M25/M40 APLC1_4785 PF00561 alpha/beta hydrolase fold APLC1_4786 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_4787 PF00156 Phosphoribosyl transferase domain APLC1_4792 PF02911 Formyl transferase, C-terminal domain APLC1_4792 PF00551 Formyl transferase APLC1_4793 PF02397 Bacterial sugar transferase APLC1_4795 PF02617 ATP-dependent Clp protease adaptor protein ClpS APLC1_4797 PF00994 Probable molybdopterin binding domain APLC1_4798 PF01966 HD domain APLC1_4799 PF01329 Pterin 4 alpha carbinolamine dehydratase APLC1_4800 PF00188 Cysteine-rich secretory protein family APLC1_4803 PF05175 Methyltransferase small domain APLC1_4806 PF13533 Biotin-lipoyl like APLC1_4807 PF00873 AcrB/AcrD/AcrF family APLC1_4810 PF01658 Myo-inositol-1-phosphate synthase APLC1_4811 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APLC1_4822 PF01555 DNA methylase APLC1_4828 PF02397 Bacterial sugar transferase APLC1_4829 PF16363 GDP-mannose 4,6 dehydratase APLC1_4830 PF01370 NAD dependent epimerase/dehydratase family APLC1_4831 PF01812 5-formyltetrahydrofolate cyclo-ligase family APLC1_4833 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_4834 PF00583 Acetyltransferase (GNAT) family APLC1_4839 PF10609 NUBPL iron-transfer P-loop NTPase APLC1_4839 PF01883 Iron-sulfur cluster assembly protein APLC1_4840 PF01218 Coproporphyrinogen III oxidase APLC1_4842 PF01740 STAS domain APLC1_4844 PF11264 Thylakoid formation protein APLC1_4846 PF01476 LysM domain APLC1_4846 PF08525 Opacity-associated protein A N-terminal motif APLC1_4846 PF01551 Peptidase family M23 APLC1_4847 PF00708 Acylphosphatase APLC1_4847 PF07503 HypF finger APLC1_4847 PF01300 Telomere recombination APLC1_4847 PF17788 HypF Kae1-like domain APLC1_4848 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APLC1_4848 PF02811 PHP domain APLC1_4848 PF01336 OB-fold nucleic acid binding domain APLC1_4848 PF07733 Bacterial DNA polymerase III alpha NTPase domain APLC1_4848 PF14579 Helix-hairpin-helix motif APLC1_4849 PF00462 Glutaredoxin APLC1_4850 PF00462 Glutaredoxin APLC1_4852 PF04012 PspA/IM30 family APLC1_4853 PF04012 PspA/IM30 family APLC1_4856 PF12452 Protein of unknown function (DUF3685) APLC1_4856 PF00072 Response regulator receiver domain APLC1_4858 PF00149 Calcineurin-like phosphoesterase APLC1_4860 PF00202 Aminotransferase class-III APLC1_4861 PF00202 Aminotransferase class-III APLC1_4863 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_4865 PF00498 FHA domain APLC1_4865 PF00005 ABC transporter APLC1_4865 PF01061 ABC-2 type transporter APLC1_4866 PF00498 FHA domain APLC1_4868 PF07282 Putative transposase DNA-binding domain APLC1_4868 PF12323 Helix-turn-helix domain APLC1_4868 PF01385 Probable transposase APLC1_4871 PF00535 Glycosyl transferase family 2 APLC1_4872 PF00535 Glycosyl transferase family 2 APLC1_4873 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_4874 PF03040 CemA family APLC1_4881 PF13181 Tetratricopeptide repeat APLC1_4886 PF00672 HAMP domain APLC1_4886 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4886 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4889 PF00392 Bacterial regulatory proteins, gntR family APLC1_4890 PF01738 Dienelactone hydrolase family APLC1_4891 PF00575 S1 RNA binding domain APLC1_4892 PF01869 BadF/BadG/BcrA/BcrD ATPase family APLC1_4894 PF00581 Rhodanese-like domain APLC1_4897 PF13291 ACT domain APLC1_4897 PF04607 Region found in RelA / SpoT proteins APLC1_4897 PF02824 TGS domain APLC1_4914 PF00069 Protein kinase domain APLC1_4928 PF10431 C-terminal, D2-small domain, of ClpB protein APLC1_4928 PF17871 AAA lid domain APLC1_4928 PF07724 AAA domain (Cdc48 subfamily) APLC1_4928 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_4928 PF02861 Clp amino terminal domain, pathogenicity island component APLC1_4933 PF13188 PAS domain APLC1_4933 PF13426 PAS domain APLC1_4933 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4933 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4933 PF00989 PAS fold APLC1_4935 PF01593 Flavin containing amine oxidoreductase APLC1_4940 PF00403 Heavy-metal-associated domain APLC1_4941 PF12169 DNA polymerase III subunits gamma and tau domain III APLC1_4943 PF03130 PBS lyase HEAT-like repeat APLC1_4944 PF01383 CpcD/allophycocyanin linker domain APLC1_4945 PF00427 Phycobilisome Linker polypeptide APLC1_4945 PF01383 CpcD/allophycocyanin linker domain APLC1_4946 PF01383 CpcD/allophycocyanin linker domain APLC1_4946 PF00427 Phycobilisome Linker polypeptide APLC1_4947 PF00502 Phycobilisome protein APLC1_4948 PF00502 Phycobilisome protein APLC1_4949 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_4951 PF00483 Nucleotidyl transferase APLC1_4952 PF00436 Single-strand binding protein family APLC1_4953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_4953 PF00989 PAS fold APLC1_4953 PF00512 His Kinase A (phospho-acceptor) domain APLC1_4953 PF16736 Single Cache-like APLC1_4954 PF00072 Response regulator receiver domain APLC1_4954 PF00486 Transcriptional regulatory protein, C terminal APLC1_4956 PF00873 AcrB/AcrD/AcrF family APLC1_4957 PF00873 AcrB/AcrD/AcrF family APLC1_4958 PF00873 AcrB/AcrD/AcrF family APLC1_4959 PF03099 Biotin/lipoate A/B protein ligase family APLC1_4964 PF13358 DDE superfamily endonuclease APLC1_4973 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_4973 PF01348 Type II intron maturase APLC1_4979 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APLC1_4979 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APLC1_4991 PF16861 Carbamoyltransferase C-terminus APLC1_4991 PF02543 Carbamoyltransferase N-terminus APLC1_4996 PF02913 FAD linked oxidases, C-terminal domain APLC1_4996 PF01565 FAD binding domain APLC1_4996 PF13183 4Fe-4S dicluster domain APLC1_4998 PF00574 Clp protease APLC1_5000 PF17876 Cold shock domain APLC1_5000 PF08206 Ribonuclease B OB domain APLC1_5000 PF00773 RNB domain APLC1_5000 PF00575 S1 RNA binding domain APLC1_5002 PF00216 Bacterial DNA-binding protein APLC1_5003 PF02514 CobN/Magnesium Chelatase APLC1_5003 PF11965 Domain of unknown function (DUF3479) APLC1_5004 PF02386 Cation transport protein APLC1_5005 PF02080 TrkA-C domain APLC1_5005 PF02254 TrkA-N domain APLC1_5009 PF01435 Peptidase family M48 APLC1_5011 PF03725 3' exoribonuclease family, domain 2 APLC1_5011 PF01138 3' exoribonuclease family, domain 1 APLC1_5013 PF00963 Cohesin domain APLC1_5013 PF00395 S-layer homology domain APLC1_5020 PF00535 Glycosyl transferase family 2 APLC1_5030 PF00534 Glycosyl transferases group 1 APLC1_5030 PF13439 Glycosyltransferase Family 4 APLC1_5034 PF10397 Adenylosuccinate lyase C-terminus APLC1_5034 PF00206 Lyase APLC1_5044 PF02492 CobW/HypB/UreG, nucleotide-binding domain APLC1_5046 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA APLC1_5047 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APLC1_5047 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APLC1_5048 PF00365 Phosphofructokinase APLC1_5050 PF13202 EF hand APLC1_5050 PF00923 Transaldolase/Fructose-6-phosphate aldolase APLC1_5051 PF13202 EF hand APLC1_5051 PF00923 Transaldolase/Fructose-6-phosphate aldolase APLC1_5053 PF01348 Type II intron maturase APLC1_5053 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5064 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5064 PF01348 Type II intron maturase APLC1_5071 PF16363 GDP-mannose 4,6 dehydratase APLC1_5074 PF02562 PhoH-like protein APLC1_5076 PF00886 Ribosomal protein S16 APLC1_5077 PF00448 SRP54-type protein, GTPase domain APLC1_5077 PF02881 SRP54-type protein, helical bundle domain APLC1_5077 PF02978 Signal peptide binding domain APLC1_5080 PF00005 ABC transporter APLC1_5082 PF00124 Photosynthetic reaction centre protein APLC1_5091 PF00571 CBS domain APLC1_5091 PF00478 IMP dehydrogenase / GMP reductase domain APLC1_5093 PF01737 YCF9 APLC1_5094 PF00885 6,7-dimethyl-8-ribityllumazine synthase APLC1_5098 PF07662 Na+ dependent nucleoside transporter C-terminus APLC1_5098 PF07670 Nucleoside recognition APLC1_5098 PF01773 Na+ dependent nucleoside transporter N-terminus APLC1_5102 PF09190 DALR domain APLC1_5102 PF01406 tRNA synthetases class I (C) catalytic domain APLC1_5103 PF01502 Phosphoribosyl-AMP cyclohydrolase APLC1_5104 PF07683 Cobalamin synthesis protein cobW C-terminal domain APLC1_5104 PF02492 CobW/HypB/UreG, nucleotide-binding domain APLC1_5105 PF02657 Fe-S metabolism associated domain APLC1_5106 PF00490 Delta-aminolevulinic acid dehydratase APLC1_5110 PF00909 Ammonium Transporter Family APLC1_5111 PF00731 AIR carboxylase APLC1_5114 PF01979 Amidohydrolase family APLC1_5118 PF01348 Type II intron maturase APLC1_5118 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5124 PF00561 alpha/beta hydrolase fold APLC1_5125 PF00154 recA bacterial DNA recombination protein APLC1_5126 PF00180 Isocitrate/isopropylmalate dehydrogenase APLC1_5128 PF01293 Phosphoenolpyruvate carboxykinase APLC1_5129 PF00196 Bacterial regulatory proteins, luxR family APLC1_5129 PF00072 Response regulator receiver domain APLC1_5130 PF03454 MoeA C-terminal region (domain IV) APLC1_5130 PF00994 Probable molybdopterin binding domain APLC1_5130 PF03453 MoeA N-terminal region (domain I and II) APLC1_5131 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APLC1_5131 PF12557 Cob(I)alamin adenosyltransferase N terminal APLC1_5132 PF02492 CobW/HypB/UreG, nucleotide-binding domain APLC1_5139 PF01627 Hpt domain APLC1_5139 PF00072 Response regulator receiver domain APLC1_5139 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5142 PF16363 GDP-mannose 4,6 dehydratase APLC1_5144 PF02469 Fasciclin domain APLC1_5148 PF00591 Glycosyl transferase family, a/b domain APLC1_5148 PF02885 Glycosyl transferase family, helical bundle domain APLC1_5148 PF00117 Glutamine amidotransferase class-I APLC1_5149 PF01219 Prokaryotic diacylglycerol kinase APLC1_5150 PF02130 Uncharacterized protein family UPF0054 APLC1_5172 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_5172 PF06426 Serine acetyltransferase, N-terminal APLC1_5176 PF01494 FAD binding domain APLC1_5177 PF04127 DNA / pantothenate metabolism flavoprotein APLC1_5177 PF02441 Flavoprotein APLC1_5178 PF10742 Protein of unknown function (DUF2555) APLC1_5183 PF00657 GDSL-like Lipase/Acylhydrolase APLC1_5186 PF02779 Transketolase, pyrimidine binding domain APLC1_5186 PF00456 Transketolase, thiamine diphosphate binding domain APLC1_5186 PF02780 Transketolase, C-terminal domain APLC1_5188 PF02152 Dihydroneopterin aldolase APLC1_5190 PF01381 Helix-turn-helix APLC1_5191 PF01420 Type I restriction modification DNA specificity domain APLC1_5192 PF06250 YhcG PDDEXK nuclease domain APLC1_5192 PF17761 DUF1016 N-terminal domain APLC1_5194 PF13358 DDE superfamily endonuclease APLC1_5196 PF13358 DDE superfamily endonuclease APLC1_5200 PF04960 Glutaminase APLC1_5205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5205 PF13188 PAS domain APLC1_5205 PF13426 PAS domain APLC1_5207 PF01678 Diaminopimelate epimerase APLC1_5209 PF01063 Amino-transferase class IV APLC1_5210 PF17284 Spermidine synthase tetramerisation domain APLC1_5213 PF00753 Metallo-beta-lactamase superfamily APLC1_5214 PF01925 Sulfite exporter TauE/SafE APLC1_5215 PF05193 Peptidase M16 inactive domain APLC1_5215 PF00675 Insulinase (Peptidase family M16) APLC1_5216 PF05193 Peptidase M16 inactive domain APLC1_5216 PF00675 Insulinase (Peptidase family M16) APLC1_5217 PF00440 Bacterial regulatory proteins, tetR family APLC1_5224 PF01348 Type II intron maturase APLC1_5224 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5235 PF04461 Protein of unknown function (DUF520) APLC1_5249 PF03793 PASTA domain APLC1_5249 PF00069 Protein kinase domain APLC1_5251 PF00111 2Fe-2S iron-sulfur cluster binding domain APLC1_5257 PF02405 Permease MlaE APLC1_5258 PF02469 Fasciclin domain APLC1_5263 PF02405 Permease MlaE APLC1_5264 PF02469 Fasciclin domain APLC1_5265 PF02469 Fasciclin domain APLC1_5268 PF09518 HindIII restriction endonuclease APLC1_5269 PF01555 DNA methylase APLC1_5278 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system APLC1_5279 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APLC1_5296 PF01850 PIN domain APLC1_5304 PF03462 PCRF domain APLC1_5304 PF00472 RF-1 domain APLC1_5305 PF13495 Phage integrase, N-terminal SAM-like domain APLC1_5305 PF00589 Phage integrase family APLC1_5311 PF00472 RF-1 domain APLC1_5311 PF03462 PCRF domain APLC1_5314 PF13495 Phage integrase, N-terminal SAM-like domain APLC1_5314 PF00589 Phage integrase family APLC1_5315 PF01555 DNA methylase APLC1_5320 PF03462 PCRF domain APLC1_5320 PF00472 RF-1 domain APLC1_5321 PF13495 Phage integrase, N-terminal SAM-like domain APLC1_5321 PF00589 Phage integrase family APLC1_5326 PF08463 EcoEI R protein C-terminal APLC1_5326 PF00271 Helicase conserved C-terminal domain APLC1_5326 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APLC1_5326 PF04851 Type III restriction enzyme, res subunit APLC1_5328 PF02384 N-6 DNA Methylase APLC1_5335 PF01420 Type I restriction modification DNA specificity domain APLC1_5345 PF04960 Glutaminase APLC1_5346 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APLC1_5353 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5353 PF01348 Type II intron maturase APLC1_5356 PF00582 Universal stress protein family APLC1_5362 PF05239 PRC-barrel domain APLC1_5362 PF01782 RimM N-terminal domain APLC1_5363 PF05239 PRC-barrel domain APLC1_5363 PF01782 RimM N-terminal domain APLC1_5367 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APLC1_5367 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APLC1_5368 PF00113 Enolase, C-terminal TIM barrel domain APLC1_5368 PF03952 Enolase, N-terminal domain APLC1_5370 PF00288 GHMP kinases N terminal domain APLC1_5370 PF08544 GHMP kinases C terminal APLC1_5371 PF00398 Ribosomal RNA adenine dimethylase APLC1_5373 PF00266 Aminotransferase class-V APLC1_5374 PF00218 Indole-3-glycerol phosphate synthase APLC1_5375 PF03912 Psb28 protein APLC1_5377 PF06470 SMC proteins Flexible Hinge Domain APLC1_5377 PF02463 RecF/RecN/SMC N terminal domain APLC1_5379 PF02463 RecF/RecN/SMC N terminal domain APLC1_5379 PF06470 SMC proteins Flexible Hinge Domain APLC1_5384 PF03109 ABC1 family APLC1_5387 PF00486 Transcriptional regulatory protein, C terminal APLC1_5387 PF00072 Response regulator receiver domain APLC1_5388 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_5389 PF00672 HAMP domain APLC1_5389 PF00989 PAS fold APLC1_5389 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5389 PF18698 Histidine kinase sensor domain APLC1_5389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5392 PF01370 NAD dependent epimerase/dehydratase family APLC1_5406 PF03092 BT1 family APLC1_5407 PF03092 BT1 family APLC1_5408 PF03055 Retinal pigment epithelial membrane protein APLC1_5409 PF01872 RibD C-terminal domain APLC1_5409 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APLC1_5411 PF08241 Methyltransferase domain APLC1_5416 PF00483 Nucleotidyl transferase APLC1_5421 PF01556 DnaJ C terminal domain APLC1_5421 PF00226 DnaJ domain APLC1_5424 PF00072 Response regulator receiver domain APLC1_5426 PF00005 ABC transporter APLC1_5426 PF16326 ABC transporter C-terminal domain APLC1_5426 PF12848 ABC transporter APLC1_5427 PF02954 Bacterial regulatory protein, Fis family APLC1_5427 PF00072 Response regulator receiver domain APLC1_5427 PF00158 Sigma-54 interaction domain APLC1_5428 PF03462 PCRF domain APLC1_5428 PF00472 RF-1 domain APLC1_5429 PF01197 Ribosomal protein L31 APLC1_5430 PF00380 Ribosomal protein S9/S16 APLC1_5431 PF00572 Ribosomal protein L13 APLC1_5432 PF01416 tRNA pseudouridine synthase APLC1_5433 PF01196 Ribosomal protein L17 APLC1_5434 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APLC1_5434 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APLC1_5434 PF01000 RNA polymerase Rpb3/RpoA insert domain APLC1_5435 PF00411 Ribosomal protein S11 APLC1_5436 PF00416 Ribosomal protein S13/S18 APLC1_5437 PF01176 Translation initiation factor 1A / IF-1 APLC1_5439 PF00344 SecY translocase APLC1_5440 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APLC1_5441 PF00333 Ribosomal protein S5, N-terminal domain APLC1_5441 PF03719 Ribosomal protein S5, C-terminal domain APLC1_5442 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APLC1_5443 PF00347 Ribosomal protein L6 APLC1_5444 PF00410 Ribosomal protein S8 APLC1_5445 PF00281 Ribosomal protein L5 APLC1_5445 PF00673 ribosomal L5P family C-terminus APLC1_5446 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APLC1_5446 PF00467 KOW motif APLC1_5447 PF00238 Ribosomal protein L14p/L23e APLC1_5448 PF00366 Ribosomal protein S17 APLC1_5449 PF00831 Ribosomal L29 protein APLC1_5450 PF00252 Ribosomal protein L16p/L10e APLC1_5451 PF07650 KH domain APLC1_5451 PF00189 Ribosomal protein S3, C-terminal domain APLC1_5452 PF00237 Ribosomal protein L22p/L17e APLC1_5453 PF00203 Ribosomal protein S19 APLC1_5454 PF03947 Ribosomal Proteins L2, C-terminal domain APLC1_5454 PF00181 Ribosomal Proteins L2, RNA binding domain APLC1_5455 PF00276 Ribosomal protein L23 APLC1_5456 PF00573 Ribosomal protein L4/L1 family APLC1_5457 PF00297 Ribosomal protein L3 APLC1_5460 PF13426 PAS domain APLC1_5460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5460 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5460 PF00672 HAMP domain APLC1_5461 PF00072 Response regulator receiver domain APLC1_5461 PF00486 Transcriptional regulatory protein, C terminal APLC1_5464 PF08007 Cupin superfamily protein APLC1_5470 PF00535 Glycosyl transferase family 2 APLC1_5471 PF08502 LeuA allosteric (dimerisation) domain APLC1_5471 PF00682 HMGL-like APLC1_5472 PF08502 LeuA allosteric (dimerisation) domain APLC1_5472 PF00682 HMGL-like APLC1_5473 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APLC1_5473 PF00205 Thiamine pyrophosphate enzyme, central domain APLC1_5473 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APLC1_5474 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APLC1_5474 PF00205 Thiamine pyrophosphate enzyme, central domain APLC1_5474 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APLC1_5475 PF00009 Elongation factor Tu GTP binding domain APLC1_5475 PF14492 Elongation Factor G, domain II APLC1_5475 PF03764 Elongation factor G, domain IV APLC1_5475 PF00679 Elongation factor G C-terminus APLC1_5476 PF03600 Citrate transporter APLC1_5476 PF02080 TrkA-C domain APLC1_5479 PF00072 Response regulator receiver domain APLC1_5479 PF00486 Transcriptional regulatory protein, C terminal APLC1_5480 PF02927 Cellulase N-terminal ig-like domain APLC1_5480 PF00759 Glycosyl hydrolase family 9 APLC1_5481 PF01808 AICARFT/IMPCHase bienzyme APLC1_5481 PF02142 MGS-like domain APLC1_5482 PF00075 RNase H APLC1_5483 PF00456 Transketolase, thiamine diphosphate binding domain APLC1_5483 PF02779 Transketolase, pyrimidine binding domain APLC1_5483 PF02780 Transketolase, C-terminal domain APLC1_5485 PF00923 Transaldolase/Fructose-6-phosphate aldolase APLC1_5487 PF00085 Thioredoxin APLC1_5489 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APLC1_5489 PF03466 LysR substrate binding domain APLC1_5490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APLC1_5490 PF03466 LysR substrate binding domain APLC1_5491 PF00069 Protein kinase domain APLC1_5492 PF07282 Putative transposase DNA-binding domain APLC1_5492 PF01385 Probable transposase APLC1_5492 PF12323 Helix-turn-helix domain APLC1_5495 PF00248 Aldo/keto reductase family APLC1_5497 PF00677 Lumazine binding domain APLC1_5498 PF00223 Photosystem I psaA/psaB protein APLC1_5499 PF00223 Photosystem I psaA/psaB protein APLC1_5501 PF00561 alpha/beta hydrolase fold APLC1_5502 PF03781 Sulfatase-modifying factor enzyme 1 APLC1_5502 PF12867 DinB superfamily APLC1_5503 PF13230 Glutamine amidotransferases class-II APLC1_5507 PF12146 Serine aminopeptidase, S33 APLC1_5508 PF01597 Glycine cleavage H-protein APLC1_5509 PF04542 Sigma-70 region 2 APLC1_5509 PF04539 Sigma-70 region 3 APLC1_5509 PF04545 Sigma-70, region 4 APLC1_5513 PF07085 DRTGG domain APLC1_5517 PF08442 ATP-grasp domain APLC1_5517 PF00549 CoA-ligase APLC1_5518 PF00549 CoA-ligase APLC1_5518 PF02629 CoA binding domain APLC1_5519 PF00875 DNA photolyase APLC1_5519 PF03441 FAD binding domain of DNA photolyase APLC1_5520 PF01545 Cation efflux family APLC1_5520 PF16916 Dimerisation domain of Zinc Transporter APLC1_5545 PF00999 Sodium/hydrogen exchanger family APLC1_5545 PF00582 Universal stress protein family APLC1_5546 PF00582 Universal stress protein family APLC1_5546 PF00999 Sodium/hydrogen exchanger family APLC1_5547 PF00999 Sodium/hydrogen exchanger family APLC1_5547 PF00582 Universal stress protein family APLC1_5548 PF00128 Alpha amylase, catalytic domain APLC1_5551 PF01746 tRNA (Guanine-1)-methyltransferase APLC1_5553 PF03575 Peptidase family S51 APLC1_5554 PF03575 Peptidase family S51 APLC1_5555 PF08245 Mur ligase middle domain APLC1_5555 PF08443 RimK-like ATP-grasp domain APLC1_5555 PF02875 Mur ligase family, glutamate ligase domain APLC1_5558 PF02469 Fasciclin domain APLC1_5559 PF01471 Putative peptidoglycan binding domain APLC1_5563 PF01891 Cobalt uptake substrate-specific transmembrane region APLC1_5565 PF00814 Glycoprotease family APLC1_5574 PF00805 Pentapeptide repeats (8 copies) APLC1_5574 PF00069 Protein kinase domain APLC1_5576 PF00563 EAL domain APLC1_5576 PF01590 GAF domain APLC1_5576 PF00360 Phytochrome region APLC1_5576 PF00990 Diguanylate cyclase, GGDEF domain APLC1_5577 PF13735 tRNA nucleotidyltransferase domain 2 putative APLC1_5577 PF01743 Poly A polymerase head domain APLC1_5577 PF12627 Probable RNA and SrmB- binding site of polymerase A APLC1_5582 PF14332 Domain of unknown function (DUF4388) APLC1_5582 PF00072 Response regulator receiver domain APLC1_5583 PF00072 Response regulator receiver domain APLC1_5583 PF00486 Transcriptional regulatory protein, C terminal APLC1_5585 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APLC1_5585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APLC1_5586 PF01584 CheW-like domain APLC1_5586 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5586 PF01627 Hpt domain APLC1_5586 PF00072 Response regulator receiver domain APLC1_5586 PF02895 Signal transducing histidine kinase, homodimeric domain APLC1_5594 PF01385 Probable transposase APLC1_5594 PF12323 Helix-turn-helix domain APLC1_5594 PF07282 Putative transposase DNA-binding domain APLC1_5596 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_5596 PF17862 AAA+ lid domain APLC1_5596 PF06480 FtsH Extracellular APLC1_5596 PF01434 Peptidase family M41 APLC1_5609 PF00563 EAL domain APLC1_5609 PF01590 GAF domain APLC1_5609 PF00990 Diguanylate cyclase, GGDEF domain APLC1_5609 PF00360 Phytochrome region APLC1_5611 PF00877 NlpC/P60 family APLC1_5615 PF01555 DNA methylase APLC1_5616 PF01040 UbiA prenyltransferase family APLC1_5617 PF01040 UbiA prenyltransferase family APLC1_5618 PF02545 Maf-like protein APLC1_5624 PF01425 Amidase APLC1_5626 PF00005 ABC transporter APLC1_5627 PF01933 Uncharacterised protein family UPF0052 APLC1_5630 PF00675 Insulinase (Peptidase family M16) APLC1_5630 PF05193 Peptidase M16 inactive domain APLC1_5633 PF02472 Biopolymer transport protein ExbD/TolR APLC1_5634 PF01618 MotA/TolQ/ExbB proton channel family APLC1_5635 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APLC1_5635 PF07685 CobB/CobQ-like glutamine amidotransferase domain APLC1_5637 PF00578 AhpC/TSA family APLC1_5641 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5641 PF01348 Type II intron maturase APLC1_5646 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APLC1_5649 PF02872 5'-nucleotidase, C-terminal domain APLC1_5649 PF00149 Calcineurin-like phosphoesterase APLC1_5650 PF03480 Bacterial extracellular solute-binding protein, family 7 APLC1_5651 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APLC1_5651 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APLC1_5652 PF00111 2Fe-2S iron-sulfur cluster binding domain APLC1_5654 PF00459 Inositol monophosphatase family APLC1_5656 PF13393 Histidyl-tRNA synthetase APLC1_5660 PF00155 Aminotransferase class I and II APLC1_5661 PF00009 Elongation factor Tu GTP binding domain APLC1_5661 PF11987 Translation-initiation factor 2 APLC1_5661 PF04760 Translation initiation factor IF-2, N-terminal region APLC1_5662 PF00009 Elongation factor Tu GTP binding domain APLC1_5662 PF11987 Translation-initiation factor 2 APLC1_5662 PF04760 Translation initiation factor IF-2, N-terminal region APLC1_5670 PF13184 NusA-like KH domain APLC1_5670 PF08529 NusA N-terminal domain APLC1_5670 PF00575 S1 RNA binding domain APLC1_5671 PF02576 RimP N-terminal domain APLC1_5673 PF00535 Glycosyl transferase family 2 APLC1_5674 PF01250 Ribosomal protein S6 APLC1_5676 PF01348 Type II intron maturase APLC1_5676 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5680 PF08448 PAS fold APLC1_5680 PF13188 PAS domain APLC1_5680 PF00072 Response regulator receiver domain APLC1_5680 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5681 PF04509 CheC-like family APLC1_5682 PF00072 Response regulator receiver domain APLC1_5684 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_5684 PF04324 BFD-like [2Fe-2S] binding domain APLC1_5685 PF01266 FAD dependent oxidoreductase APLC1_5687 PF00950 ABC 3 transport family APLC1_5688 PF00005 ABC transporter APLC1_5689 PF01297 Zinc-uptake complex component A periplasmic APLC1_5690 PF00773 RNB domain APLC1_5691 PF01084 Ribosomal protein S18 APLC1_5692 PF00471 Ribosomal protein L33 APLC1_5700 PF00155 Aminotransferase class I and II APLC1_5701 PF00085 Thioredoxin APLC1_5705 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5705 PF01348 Type II intron maturase APLC1_5708 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APLC1_5709 PF01488 Shikimate / quinate 5-dehydrogenase APLC1_5709 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APLC1_5709 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APLC1_5710 PF00133 tRNA synthetases class I (I, L, M and V) APLC1_5710 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase APLC1_5710 PF10458 Valyl tRNA synthetase tRNA binding arm APLC1_5710 PF08264 Anticodon-binding domain of tRNA APLC1_5711 PF08264 Anticodon-binding domain of tRNA APLC1_5711 PF00133 tRNA synthetases class I (I, L, M and V) APLC1_5711 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase APLC1_5711 PF10458 Valyl tRNA synthetase tRNA binding arm APLC1_5712 PF08264 Anticodon-binding domain of tRNA APLC1_5712 PF00133 tRNA synthetases class I (I, L, M and V) APLC1_5712 PF10458 Valyl tRNA synthetase tRNA binding arm APLC1_5715 PF00400 WD domain, G-beta repeat APLC1_5717 PF00400 WD domain, G-beta repeat APLC1_5718 PF01300 Telomere recombination APLC1_5719 PF01969 Protein of unknown function DUF111 APLC1_5720 PF17755 UvrA DNA-binding domain APLC1_5720 PF17760 UvrA interaction domain APLC1_5721 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain APLC1_5721 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain APLC1_5722 PF00596 Class II Aldolase and Adducin N-terminal domain APLC1_5723 PF02570 Precorrin-8X methylmutase APLC1_5725 PF05173 Dihydrodipicolinate reductase, C-terminus APLC1_5725 PF01113 Dihydrodipicolinate reductase, N-terminus APLC1_5727 PF03707 Bacterial signalling protein N terminal repeat APLC1_5727 PF00990 Diguanylate cyclase, GGDEF domain APLC1_5727 PF00563 EAL domain APLC1_5730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APLC1_5730 PF00005 ABC transporter APLC1_5731 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APLC1_5731 PF00005 ABC transporter APLC1_5734 PF07859 alpha/beta hydrolase fold APLC1_5737 PF03881 Fructosamine kinase APLC1_5738 PF03881 Fructosamine kinase APLC1_5741 PF02698 DUF218 domain APLC1_5743 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APLC1_5743 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APLC1_5745 PF03808 Glycosyl transferase WecB/TagA/CpsF family APLC1_5746 PF00535 Glycosyl transferase family 2 APLC1_5748 PF00005 ABC transporter APLC1_5748 PF00664 ABC transporter transmembrane region APLC1_5749 PF00534 Glycosyl transferases group 1 APLC1_5749 PF13439 Glycosyltransferase Family 4 APLC1_5750 PF00534 Glycosyl transferases group 1 APLC1_5752 PF13439 Glycosyltransferase Family 4 APLC1_5752 PF00534 Glycosyl transferases group 1 APLC1_5753 PF00535 Glycosyl transferase family 2 APLC1_5756 PF00534 Glycosyl transferases group 1 APLC1_5756 PF13439 Glycosyltransferase Family 4 APLC1_5757 PF00534 Glycosyl transferases group 1 APLC1_5757 PF13439 Glycosyltransferase Family 4 APLC1_5758 PF00535 Glycosyl transferase family 2 APLC1_5759 PF13439 Glycosyltransferase Family 4 APLC1_5759 PF00534 Glycosyl transferases group 1 APLC1_5761 PF13439 Glycosyltransferase Family 4 APLC1_5761 PF00534 Glycosyl transferases group 1 APLC1_5764 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APLC1_5766 PF00069 Protein kinase domain APLC1_5766 PF00805 Pentapeptide repeats (8 copies) APLC1_5767 PF00072 Response regulator receiver domain APLC1_5767 PF00990 Diguanylate cyclase, GGDEF domain APLC1_5768 PF00072 Response regulator receiver domain APLC1_5768 PF09308 LuxQ, periplasmic APLC1_5768 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5768 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5771 PF17912 MalK OB fold domain APLC1_5771 PF00005 ABC transporter APLC1_5771 PF03459 TOBE domain APLC1_5772 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_5773 PF00528 Binding-protein-dependent transport system inner membrane component APLC1_5774 PF01547 Bacterial extracellular solute-binding protein APLC1_5775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APLC1_5775 PF02403 Seryl-tRNA synthetase N-terminal domain APLC1_5776 PF00893 Small Multidrug Resistance protein APLC1_5779 PF00805 Pentapeptide repeats (8 copies) APLC1_5779 PF00069 Protein kinase domain APLC1_5780 PF00069 Protein kinase domain APLC1_5780 PF00805 Pentapeptide repeats (8 copies) APLC1_5781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5781 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5781 PF09308 LuxQ, periplasmic APLC1_5781 PF00072 Response regulator receiver domain APLC1_5784 PF07992 Pyridine nucleotide-disulphide oxidoreductase APLC1_5786 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APLC1_5788 PF00005 ABC transporter APLC1_5789 PF00291 Pyridoxal-phosphate dependent enzyme APLC1_5790 PF00990 Diguanylate cyclase, GGDEF domain APLC1_5790 PF03707 Bacterial signalling protein N terminal repeat APLC1_5790 PF00563 EAL domain APLC1_5791 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5791 PF00672 HAMP domain APLC1_5791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5792 PF00672 HAMP domain APLC1_5792 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5792 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5793 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APLC1_5794 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APLC1_5795 PF13237 4Fe-4S dicluster domain APLC1_5796 PF00146 NADH dehydrogenase APLC1_5797 PF00285 Citrate synthase, C-terminal domain APLC1_5798 PF00300 Histidine phosphatase superfamily (branch 1) APLC1_5800 PF00842 Alanine racemase, C-terminal domain APLC1_5800 PF01168 Alanine racemase, N-terminal domain APLC1_5802 PF00675 Insulinase (Peptidase family M16) APLC1_5802 PF05193 Peptidase M16 inactive domain APLC1_5805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_5805 PF00072 Response regulator receiver domain APLC1_5805 PF01627 Hpt domain APLC1_5805 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5805 PF00672 HAMP domain APLC1_5809 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APLC1_5812 PF01807 CHC2 zinc finger APLC1_5812 PF10410 DnaB-helicase binding domain of primase APLC1_5812 PF08275 DNA primase catalytic core, N-terminal domain APLC1_5814 PF00400 WD domain, G-beta repeat APLC1_5814 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APLC1_5820 PF02637 GatB domain APLC1_5820 PF02934 GatB/GatE catalytic domain APLC1_5823 PF03552 Cellulose synthase APLC1_5823 PF00535 Glycosyl transferase family 2 APLC1_5823 PF07238 PilZ domain APLC1_5829 PF11700 Vacuole effluxer Atg22 like APLC1_5831 PF08865 Domain of unknown function (DUF1830) APLC1_5832 PF04055 Radical SAM superfamily APLC1_5833 PF03707 Bacterial signalling protein N terminal repeat APLC1_5833 PF00990 Diguanylate cyclase, GGDEF domain APLC1_5833 PF00563 EAL domain APLC1_5834 PF01590 GAF domain APLC1_5834 PF00990 Diguanylate cyclase, GGDEF domain APLC1_5834 PF00360 Phytochrome region APLC1_5834 PF00563 EAL domain APLC1_5835 PF00563 EAL domain APLC1_5835 PF00990 Diguanylate cyclase, GGDEF domain APLC1_5835 PF03707 Bacterial signalling protein N terminal repeat APLC1_5835 PF13188 PAS domain APLC1_5836 PF00072 Response regulator receiver domain APLC1_5837 PF00486 Transcriptional regulatory protein, C terminal APLC1_5837 PF00072 Response regulator receiver domain APLC1_5841 PF00072 Response regulator receiver domain APLC1_5841 PF01627 Hpt domain APLC1_5841 PF00512 His Kinase A (phospho-acceptor) domain APLC1_5841 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_5841 PF00672 HAMP domain APLC1_5841 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_5842 PF00582 Universal stress protein family APLC1_5843 PF00815 Histidinol dehydrogenase APLC1_5844 PF01649 Ribosomal protein S20 APLC1_5845 PF01026 TatD related DNase APLC1_5846 PF04561 RNA polymerase Rpb2, domain 2 APLC1_5846 PF00562 RNA polymerase Rpb2, domain 6 APLC1_5846 PF04563 RNA polymerase beta subunit APLC1_5846 PF04565 RNA polymerase Rpb2, domain 3 APLC1_5846 PF04560 RNA polymerase Rpb2, domain 7 APLC1_5846 PF10385 RNA polymerase beta subunit external 1 domain APLC1_5847 PF04997 RNA polymerase Rpb1, domain 1 APLC1_5847 PF00623 RNA polymerase Rpb1, domain 2 APLC1_5847 PF04983 RNA polymerase Rpb1, domain 3 APLC1_5848 PF04997 RNA polymerase Rpb1, domain 1 APLC1_5848 PF00623 RNA polymerase Rpb1, domain 2 APLC1_5848 PF04983 RNA polymerase Rpb1, domain 3 APLC1_5849 PF04983 RNA polymerase Rpb1, domain 3 APLC1_5849 PF04998 RNA polymerase Rpb1, domain 5 APLC1_5849 PF05000 RNA polymerase Rpb1, domain 4 APLC1_5854 PF00502 Phycobilisome protein APLC1_5855 PF00502 Phycobilisome protein APLC1_5856 PF01383 CpcD/allophycocyanin linker domain APLC1_5858 PF05996 Ferredoxin-dependent bilin reductase APLC1_5865 PF00633 Helix-hairpin-helix motif APLC1_5865 PF02132 RecR protein APLC1_5865 PF13662 Toprim domain APLC1_5866 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APLC1_5869 PF07690 Major Facilitator Superfamily APLC1_5870 PF00501 AMP-binding enzyme APLC1_5872 PF00501 AMP-binding enzyme APLC1_5873 PF00501 AMP-binding enzyme APLC1_5874 PF07993 Male sterility protein APLC1_5874 PF00550 Phosphopantetheine attachment site APLC1_5875 PF00155 Aminotransferase class I and II APLC1_5876 PF00155 Aminotransferase class I and II APLC1_5877 PF13282 Domain of unknown function (DUF4070) APLC1_5877 PF02310 B12 binding domain APLC1_5877 PF04055 Radical SAM superfamily APLC1_5880 PF13476 AAA domain APLC1_5881 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_5882 PF02469 Fasciclin domain APLC1_5885 PF00920 Dehydratase family APLC1_5890 PF00395 S-layer homology domain APLC1_5890 PF04966 Carbohydrate-selective porin, OprB family APLC1_5891 PF16360 GTP-binding GTPase Middle Region APLC1_5891 PF01926 50S ribosome-binding GTPase APLC1_5891 PF13167 GTP-binding GTPase N-terminal APLC1_5901 PF00403 Heavy-metal-associated domain APLC1_5903 PF00403 Heavy-metal-associated domain APLC1_5904 PF02142 MGS-like domain APLC1_5904 PF00781 Diacylglycerol kinase catalytic domain APLC1_5905 PF01595 Cyclin M transmembrane N-terminal domain APLC1_5905 PF03471 Transporter associated domain APLC1_5905 PF00571 CBS domain APLC1_5944 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_5944 PF01348 Type II intron maturase APLC1_5951 PF02195 ParB-like nuclease domain APLC1_5951 PF17762 HTH domain found in ParB protein APLC1_5952 PF00498 FHA domain APLC1_5952 PF00005 ABC transporter APLC1_5952 PF01061 ABC-2 type transporter APLC1_5953 PF00069 Protein kinase domain APLC1_5955 PF16416 ARM-like repeat domain, GUN4-N terminal APLC1_5955 PF05419 GUN4-like APLC1_5958 PF17762 HTH domain found in ParB protein APLC1_5958 PF02195 ParB-like nuclease domain APLC1_5959 PF02195 ParB-like nuclease domain APLC1_5963 PF00069 Protein kinase domain APLC1_5965 PF01580 FtsK/SpoIIIE family APLC1_5968 PF03496 ADP-ribosyltransferase exoenzyme APLC1_5971 PF03793 PASTA domain APLC1_5971 PF00069 Protein kinase domain APLC1_5973 PF00733 Asparagine synthase APLC1_5973 PF13537 Glutamine amidotransferase domain APLC1_5976 PF00224 Pyruvate kinase, barrel domain APLC1_5976 PF02887 Pyruvate kinase, alpha/beta domain APLC1_5976 PF00391 PEP-utilising enzyme, mobile domain APLC1_5985 PF00486 Transcriptional regulatory protein, C terminal APLC1_5985 PF01627 Hpt domain APLC1_5985 PF00072 Response regulator receiver domain APLC1_5990 PF00561 alpha/beta hydrolase fold APLC1_5991 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) APLC1_5997 PF17862 AAA+ lid domain APLC1_5997 PF06480 FtsH Extracellular APLC1_5997 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_5997 PF01434 Peptidase family M41 APLC1_5998 PF09154 Domain of unknown function (DUF1939) APLC1_5998 PF00128 Alpha amylase, catalytic domain APLC1_6000 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APLC1_6002 PF02653 Branched-chain amino acid transport system / permease component APLC1_6005 PF00005 ABC transporter APLC1_6005 PF12399 Branched-chain amino acid ATP-binding cassette transporter APLC1_6006 PF00005 ABC transporter APLC1_6007 PF05690 Thiazole biosynthesis protein ThiG APLC1_6007 PF01266 FAD dependent oxidoreductase APLC1_6009 PF00106 short chain dehydrogenase APLC1_6025 PF01124 MAPEG family APLC1_6027 PF00360 Phytochrome region APLC1_6027 PF01590 GAF domain APLC1_6027 PF00563 EAL domain APLC1_6027 PF00990 Diguanylate cyclase, GGDEF domain APLC1_6028 PF00155 Aminotransferase class I and II APLC1_6028 PF00392 Bacterial regulatory proteins, gntR family APLC1_6030 PF05378 Hydantoinase/oxoprolinase N-terminal region APLC1_6030 PF01968 Hydantoinase/oxoprolinase APLC1_6032 PF08544 GHMP kinases C terminal APLC1_6032 PF00288 GHMP kinases N terminal domain APLC1_6037 PF00069 Protein kinase domain APLC1_6037 PF00805 Pentapeptide repeats (8 copies) APLC1_6040 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_6040 PF01348 Type II intron maturase APLC1_6045 PF00342 Phosphoglucose isomerase APLC1_6046 PF07085 DRTGG domain APLC1_6046 PF01515 Phosphate acetyl/butaryl transferase APLC1_6049 PF00563 EAL domain APLC1_6049 PF00990 Diguanylate cyclase, GGDEF domain APLC1_6049 PF03707 Bacterial signalling protein N terminal repeat APLC1_6049 PF13188 PAS domain APLC1_6051 PF01638 HxlR-like helix-turn-helix APLC1_6052 PF00391 PEP-utilising enzyme, mobile domain APLC1_6052 PF02896 PEP-utilising enzyme, TIM barrel domain APLC1_6052 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APLC1_6054 PF02941 Ferredoxin thioredoxin reductase variable alpha chain APLC1_6056 PF06472 ABC transporter transmembrane region 2 APLC1_6056 PF00005 ABC transporter APLC1_6057 PF00111 2Fe-2S iron-sulfur cluster binding domain APLC1_6059 PF11805 Protein of unknown function (DUF3326) APLC1_6060 PF02517 CPBP intramembrane metalloprotease APLC1_6062 PF00497 Bacterial extracellular solute-binding proteins, family 3 APLC1_6062 PF00512 His Kinase A (phospho-acceptor) domain APLC1_6062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_6068 PF01348 Type II intron maturase APLC1_6068 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) APLC1_6078 PF01121 Dephospho-CoA kinase APLC1_6079 PF01126 Heme oxygenase APLC1_6080 PF01975 Survival protein SurE APLC1_6082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_6082 PF00512 His Kinase A (phospho-acceptor) domain APLC1_6082 PF00989 PAS fold APLC1_6086 PF02463 RecF/RecN/SMC N terminal domain APLC1_6087 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_6087 PF00072 Response regulator receiver domain APLC1_6088 PF00364 Biotin-requiring enzyme APLC1_6088 PF02779 Transketolase, pyrimidine binding domain APLC1_6088 PF02780 Transketolase, C-terminal domain APLC1_6089 PF07549 SecD/SecF GG Motif APLC1_6089 PF02355 Protein export membrane protein APLC1_6090 PF07549 SecD/SecF GG Motif APLC1_6090 PF02355 Protein export membrane protein APLC1_6095 PF00497 Bacterial extracellular solute-binding proteins, family 3 APLC1_6096 PF01924 Hydrogenase formation hypA family APLC1_6099 PF00586 AIR synthase related protein, N-terminal domain APLC1_6099 PF02769 AIR synthase related protein, C-terminal domain APLC1_6102 PF00266 Aminotransferase class-V APLC1_6103 PF01555 DNA methylase APLC1_6106 PF05139 Erythromycin esterase APLC1_6106 PF00156 Phosphoribosyl transferase domain APLC1_6108 PF03167 Uracil DNA glycosylase superfamily APLC1_6113 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APLC1_6113 PF08501 Shikimate dehydrogenase substrate binding domain APLC1_6115 PF01556 DnaJ C terminal domain APLC1_6115 PF00684 DnaJ central domain APLC1_6115 PF00226 DnaJ domain APLC1_6117 PF00583 Acetyltransferase (GNAT) family APLC1_6119 PF12804 MobA-like NTP transferase domain APLC1_6124 PF00012 Hsp70 protein APLC1_6130 PF00326 Prolyl oligopeptidase family APLC1_6130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APLC1_6131 PF00326 Prolyl oligopeptidase family APLC1_6131 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APLC1_6133 PF16124 RecQ zinc-binding APLC1_6133 PF00270 DEAD/DEAH box helicase APLC1_6133 PF00271 Helicase conserved C-terminal domain APLC1_6134 PF00561 alpha/beta hydrolase fold APLC1_6135 PF03009 Glycerophosphoryl diester phosphodiesterase family APLC1_6140 PF08402 TOBE domain APLC1_6140 PF00005 ABC transporter APLC1_6142 PF01458 Uncharacterized protein family (UPF0051) APLC1_6142 PF14528 LAGLIDADG-like domain APLC1_6143 PF00692 dUTPase APLC1_6144 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APLC1_6145 PF12034 Domain of unknown function (DUF3520) APLC1_6145 PF00092 von Willebrand factor type A domain APLC1_6145 PF12450 von Willebrand factor APLC1_6149 PF00474 Sodium:solute symporter family APLC1_6152 PF01571 Aminomethyltransferase folate-binding domain APLC1_6152 PF08669 Glycine cleavage T-protein C-terminal barrel domain APLC1_6153 PF01568 Molydopterin dinucleotide binding domain APLC1_6153 PF00384 Molybdopterin oxidoreductase APLC1_6153 PF14710 Respiratory nitrate reductase alpha N-terminal APLC1_6157 PF02665 Nitrate reductase gamma subunit APLC1_6159 PF14711 Respiratory nitrate reductase beta C-terminal APLC1_6159 PF13247 4Fe-4S dicluster domain APLC1_6160 PF14711 Respiratory nitrate reductase beta C-terminal APLC1_6160 PF13247 4Fe-4S dicluster domain APLC1_6161 PF01152 Bacterial-like globin APLC1_6162 PF00115 Cytochrome C and Quinol oxidase polypeptide I APLC1_6164 PF00990 Diguanylate cyclase, GGDEF domain APLC1_6164 PF00072 Response regulator receiver domain APLC1_6165 PF00124 Photosynthetic reaction centre protein APLC1_6166 PF05685 Putative restriction endonuclease APLC1_6172 PF00124 Photosynthetic reaction centre protein APLC1_6173 PF05685 Putative restriction endonuclease APLC1_6189 PF00124 Photosynthetic reaction centre protein APLC1_6191 PF00035 Double-stranded RNA binding motif APLC1_6191 PF00636 Ribonuclease III domain APLC1_6193 PF00291 Pyridoxal-phosphate dependent enzyme APLC1_6197 PF02533 Photosystem II 4 kDa reaction centre component APLC1_6198 PF01702 Queuine tRNA-ribosyltransferase APLC1_6200 PF02654 Cobalamin-5-phosphate synthase APLC1_6205 PF00248 Aldo/keto reductase family APLC1_6206 PF00483 Nucleotidyl transferase APLC1_6206 PF01050 Mannose-6-phosphate isomerase APLC1_6211 PF00311 Phosphoenolpyruvate carboxylase APLC1_6214 PF00144 Beta-lactamase APLC1_6217 PF00999 Sodium/hydrogen exchanger family APLC1_6217 PF03471 Transporter associated domain APLC1_6220 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APLC1_6221 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APLC1_6223 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APLC1_6226 PF17862 AAA+ lid domain APLC1_6226 PF06480 FtsH Extracellular APLC1_6226 PF01434 Peptidase family M41 APLC1_6226 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_6229 PF02096 60Kd inner membrane protein APLC1_6231 PF00825 Ribonuclease P APLC1_6232 PF00468 Ribosomal protein L34 APLC1_6236 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APLC1_6236 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APLC1_6237 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APLC1_6238 PF02233 NAD(P) transhydrogenase beta subunit APLC1_6239 PF13614 AAA domain APLC1_6242 PF05199 GMC oxidoreductase APLC1_6242 PF00732 GMC oxidoreductase APLC1_6245 PF01370 NAD dependent epimerase/dehydratase family APLC1_6249 PF01370 NAD dependent epimerase/dehydratase family APLC1_6251 PF01040 UbiA prenyltransferase family APLC1_6255 PF10726 Protein of function (DUF2518) APLC1_6256 PF00211 Adenylate and Guanylate cyclase catalytic domain APLC1_6257 PF00072 Response regulator receiver domain APLC1_6257 PF00486 Transcriptional regulatory protein, C terminal APLC1_6258 PF00072 Response regulator receiver domain APLC1_6258 PF00512 His Kinase A (phospho-acceptor) domain APLC1_6258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_6258 PF09308 LuxQ, periplasmic APLC1_6259 PF01594 AI-2E family transporter APLC1_6260 PF13439 Glycosyltransferase Family 4 APLC1_6260 PF00534 Glycosyl transferases group 1 APLC1_6262 PF00421 Photosystem II protein APLC1_6263 PF01405 Photosystem II reaction centre T protein APLC1_6264 PF03477 ATP cone domain APLC1_6267 PF01177 Asp/Glu/Hydantoin racemase APLC1_6268 PF00109 Beta-ketoacyl synthase, N-terminal domain APLC1_6268 PF02801 Beta-ketoacyl synthase, C-terminal domain APLC1_6269 PF02801 Beta-ketoacyl synthase, C-terminal domain APLC1_6269 PF00109 Beta-ketoacyl synthase, N-terminal domain APLC1_6270 PF00550 Phosphopantetheine attachment site APLC1_6271 PF02754 Cysteine-rich domain APLC1_6272 PF12838 4Fe-4S dicluster domain APLC1_6275 PF01380 SIS domain APLC1_6281 PF02913 FAD linked oxidases, C-terminal domain APLC1_6281 PF01565 FAD binding domain APLC1_6282 PF02754 Cysteine-rich domain APLC1_6282 PF13183 4Fe-4S dicluster domain APLC1_6283 PF00672 HAMP domain APLC1_6283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_6283 PF00512 His Kinase A (phospho-acceptor) domain APLC1_6283 PF01627 Hpt domain APLC1_6283 PF00072 Response regulator receiver domain APLC1_6283 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APLC1_6284 PF01894 Uncharacterised protein family UPF0047 APLC1_6287 PF02617 ATP-dependent Clp protease adaptor protein ClpS APLC1_6288 PF01523 Putative modulator of DNA gyrase APLC1_6289 PF01523 Putative modulator of DNA gyrase APLC1_6293 PF06480 FtsH Extracellular APLC1_6293 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_6293 PF17862 AAA+ lid domain APLC1_6293 PF01434 Peptidase family M41 APLC1_6297 PF03793 PASTA domain APLC1_6297 PF00069 Protein kinase domain APLC1_6298 PF00512 His Kinase A (phospho-acceptor) domain APLC1_6298 PF00989 PAS fold APLC1_6298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APLC1_6300 PF02638 Glycosyl hydrolase-like 10 APLC1_6301 PF03062 MBOAT, membrane-bound O-acyltransferase family APLC1_6302 PF03144 Elongation factor Tu domain 2 APLC1_6302 PF06421 GTP-binding protein LepA C-terminus APLC1_6302 PF00679 Elongation factor G C-terminus APLC1_6302 PF00009 Elongation factor Tu GTP binding domain APLC1_6304 PF10502 Signal peptidase, peptidase S26 APLC1_6310 PF00294 pfkB family carbohydrate kinase APLC1_6311 PF14693 Ribosomal protein TL5, C-terminal domain APLC1_6311 PF01386 Ribosomal L25p family APLC1_6312 PF00709 Adenylosuccinate synthetase APLC1_6344 PF01612 3'-5' exonuclease APLC1_6344 PF00476 DNA polymerase family A APLC1_6344 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APLC1_6344 PF01367 5'-3' exonuclease, C-terminal SAM fold APLC1_6345 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APLC1_6345 PF00476 DNA polymerase family A APLC1_6345 PF01612 3'-5' exonuclease APLC1_6345 PF01367 5'-3' exonuclease, C-terminal SAM fold APLC1_6348 PF00072 Response regulator receiver domain APLC1_6348 PF00486 Transcriptional regulatory protein, C terminal APLC1_6349 PF01740 STAS domain APLC1_6353 PF00210 Ferritin-like domain APLC1_6354 PF00575 S1 RNA binding domain APLC1_6356 PF02773 S-adenosylmethionine synthetase, C-terminal domain APLC1_6356 PF00438 S-adenosylmethionine synthetase, N-terminal domain APLC1_6356 PF02772 S-adenosylmethionine synthetase, central domain APLC1_6357 PF05690 Thiazole biosynthesis protein ThiG APLC1_6360 PF00072 Response regulator receiver domain APLC1_6360 PF00486 Transcriptional regulatory protein, C terminal APLC1_6362 PF01593 Flavin containing amine oxidoreductase APLC1_6365 PF00488 MutS domain V APLC1_6365 PF01713 Smr domain APLC1_6372 PF06965 Na+/H+ antiporter 1 APLC1_6372 PF13462 Thioredoxin APLC1_6373 PF00931 NB-ARC domain APLC1_6373 PF00400 WD domain, G-beta repeat APLC1_6380 PF01385 Probable transposase APLC1_6380 PF07282 Putative transposase DNA-binding domain APLC1_6380 PF12323 Helix-turn-helix domain APLC1_6396 PF00004 ATPase family associated with various cellular activities (AAA) APLC1_6396 PF17758 Proteasomal ATPase OB N-terminal domain APLC1_6396 PF16450 Proteasomal ATPase OB C-terminal domain APLC1_6399 PF12849 PBP superfamily domain APLC1_6408 PF08032 RNA 2'-O ribose methyltransferase substrate binding APLC1_6408 PF00588 SpoU rRNA Methylase family APLC1_6410 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APLC1_6410 PF00132 Bacterial transferase hexapeptide (six repeats) APLC1_6412 PF04055 Radical SAM superfamily APLC1_6413 PF11780 Protein of unknown function (DUF3318) APLC1_6416 PF09367 CpeS-like protein APLC1_6418 PF02374 Anion-transporting ATPase APLC1_6418 PF17886 HSP20-like domain found in ArsA APLC1_6422 PF04085 rod shape-determining protein MreC APLC1_6423 PF07282 Putative transposase DNA-binding domain APLC1_6423 PF01385 Probable transposase APLC1_6423 PF12323 Helix-turn-helix domain APLC1_6427 PF09506 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) APLC1_6428 PF09506 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) APLC1_6429 PF09506 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) APLC1_6438 PF00005 ABC transporter APLC1_6438 PF00664 ABC transporter transmembrane region APLC1_6440 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APLC1_6440 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APLC1_6441 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APLC1_6441 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APLC1_6450 PF00330 Aconitase family (aconitate hydratase) APLC1_6451 PF00694 Aconitase C-terminal domain APLC1_6452 PF00551 Formyl transferase APLC1_6453 PF13537 Glutamine amidotransferase domain APLC1_6453 PF00733 Asparagine synthase APLC1_6458 PF13419 Haloacid dehalogenase-like hydrolase APLC1_6459 PF04434 SWIM zinc finger APLC1_6463 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system APLC1_6471 PF01850 PIN domain APLC1_6511 PF00483 Nucleotidyl transferase APLC1_6512 PF16363 GDP-mannose 4,6 dehydratase APLC1_6513 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APLC1_6514 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APLC1_6515 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase