locus-tag class description AP9108_00015 PF00535 Glycosyl transferase family 2 AP9108_00145 PF01595 Cyclin M transmembrane N-terminal domain AP9108_00145 PF03471 Transporter associated domain AP9108_00145 PF00571 CBS domain AP9108_00160 PF13439 Glycosyltransferase Family 4 AP9108_00160 PF00534 Glycosyl transferases group 1 AP9108_00175 PF02390 Putative methyltransferase AP9108_00190 PF02374 Anion-transporting ATPase AP9108_00205 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AP9108_00205 PF07685 CobB/CobQ-like glutamine amidotransferase domain AP9108_00220 PF02225 PA domain AP9108_00220 PF04389 Peptidase family M28 AP9108_00230 PF00427 Phycobilisome Linker polypeptide AP9108_00230 PF00502 Phycobilisome protein AP9108_00235 PF09335 SNARE associated Golgi protein AP9108_00240 PF01740 STAS domain AP9108_00260 PF02016 LD-carboxypeptidase N-terminal domain AP9108_00260 PF17676 LD-carboxypeptidase C-terminal domain AP9108_00285 PF17746 SfsA N-terminal OB domain AP9108_00285 PF03749 Sugar fermentation stimulation protein RE domain AP9108_00325 PF00128 Alpha amylase, catalytic domain AP9108_00325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AP9108_00330 PF09179 TilS substrate binding domain AP9108_00330 PF01171 PP-loop family AP9108_00335 PF00535 Glycosyl transferase family 2 AP9108_00345 PF08502 LeuA allosteric (dimerisation) domain AP9108_00345 PF00682 HMGL-like AP9108_00355 PF00486 Transcriptional regulatory protein, C terminal AP9108_00355 PF00072 Response regulator receiver domain AP9108_00365 PF00166 Chaperonin 10 Kd subunit AP9108_00370 PF00118 TCP-1/cpn60 chaperonin family AP9108_00395 PF17863 AAA lid domain AP9108_00395 PF01078 Magnesium chelatase, subunit ChlI AP9108_00400 PF02075 Crossover junction endodeoxyribonuclease RuvC AP9108_00415 PF01327 Polypeptide deformylase AP9108_00440 PF01940 Integral membrane protein DUF92 AP9108_00455 PF03912 Psb28 protein AP9108_00480 PF00005 ABC transporter AP9108_00485 PF02527 rRNA small subunit methyltransferase G AP9108_00500 PF01343 Peptidase family S49 AP9108_00505 PF00892 EamA-like transporter family AP9108_00510 PF11941 Domain of unknown function (DUF3459) AP9108_00510 PF00128 Alpha amylase, catalytic domain AP9108_00515 PF00128 Alpha amylase, catalytic domain AP9108_00520 PF04002 RadC-like JAB domain AP9108_00555 PF17954 Quercetinase C-terminal cupin domain AP9108_00555 PF02678 Pirin AP9108_00570 PF08003 Protein of unknown function (DUF1698) AP9108_00575 PF13649 Methyltransferase domain AP9108_00580 PF01810 LysE type translocator AP9108_00585 PF04199 Putative cyclase AP9108_00600 PF16325 Peptidase family U32 C-terminal domain AP9108_00600 PF01136 Peptidase family U32 AP9108_00610 PF00106 short chain dehydrogenase AP9108_00615 PF00155 Aminotransferase class I and II AP9108_00625 PF00027 Cyclic nucleotide-binding domain AP9108_00625 PF00520 Ion transport protein AP9108_00630 PF13180 PDZ domain AP9108_00640 PF00226 DnaJ domain AP9108_00640 PF01556 DnaJ C terminal domain AP9108_00645 PF00011 Hsp20/alpha crystallin family AP9108_00655 PF01641 SelR domain AP9108_00680 PF00390 Malic enzyme, N-terminal domain AP9108_00680 PF03949 Malic enzyme, NAD binding domain AP9108_00700 PF00534 Glycosyl transferases group 1 AP9108_00700 PF13439 Glycosyltransferase Family 4 AP9108_00725 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AP9108_00725 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AP9108_00730 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AP9108_00750 PF01654 Cytochrome bd terminal oxidase subunit I AP9108_00770 PF00106 short chain dehydrogenase AP9108_00785 PF18074 Primosomal protein N C-terminal domain AP9108_00785 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AP9108_00785 PF17764 3′ DNA-binding domain (3′BD) AP9108_00785 PF00270 DEAD/DEAH box helicase AP9108_00785 PF00271 Helicase conserved C-terminal domain AP9108_00790 PF00483 Nucleotidyl transferase AP9108_00810 PF00128 Alpha amylase, catalytic domain AP9108_00810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AP9108_00815 PF01259 SAICAR synthetase AP9108_00820 PF01103 Surface antigen AP9108_00820 PF07244 Surface antigen variable number repeat AP9108_00830 PF00270 DEAD/DEAH box helicase AP9108_00830 PF00271 Helicase conserved C-terminal domain AP9108_00830 PF16124 RecQ zinc-binding AP9108_00840 PF00570 HRDC domain AP9108_00840 PF16124 RecQ zinc-binding AP9108_00840 PF00270 DEAD/DEAH box helicase AP9108_00840 PF09382 RQC domain AP9108_00840 PF00271 Helicase conserved C-terminal domain AP9108_00865 PF08446 PAS fold AP9108_00865 PF00360 Phytochrome region AP9108_00865 PF01590 GAF domain AP9108_00865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_00865 PF00512 His Kinase A (phospho-acceptor) domain AP9108_00890 PF05552 Conserved TM helix AP9108_01040 PF13369 Transglutaminase-like superfamily AP9108_01055 PF03742 PetN AP9108_01100 PF00005 ABC transporter AP9108_01110 PF04485 Phycobilisome degradation protein nblA AP9108_01190 PF01300 Telomere recombination AP9108_01200 PF01040 UbiA prenyltransferase family AP9108_01215 PF03734 L,D-transpeptidase catalytic domain AP9108_01215 PF17969 L,D-transpeptidase C-terminal domain AP9108_01220 PF06298 Photosystem II protein Y (PsbY) AP9108_01225 PF02033 Ribosome-binding factor A AP9108_01230 PF01915 Glycosyl hydrolase family 3 C-terminal domain AP9108_01230 PF00933 Glycosyl hydrolase family 3 N terminal domain AP9108_01240 PF01964 Radical SAM ThiC family AP9108_01265 PF00395 S-layer homology domain AP9108_01265 PF00963 Cohesin domain AP9108_01270 PF00595 PDZ domain AP9108_01270 PF03572 Peptidase family S41 AP9108_01280 PF00486 Transcriptional regulatory protein, C terminal AP9108_01280 PF00072 Response regulator receiver domain AP9108_01285 PF01925 Sulfite exporter TauE/SafE AP9108_01290 PF03069 Acetamidase/Formamidase family AP9108_01290 PF03069 Acetamidase/Formamidase family AP9108_01295 PF00924 Mechanosensitive ion channel AP9108_01295 PF12795 Mechanosensitive ion channel porin domain AP9108_01295 PF12794 Mechanosensitive ion channel inner membrane domain 1 AP9108_01320 PF00936 BMC domain AP9108_01330 PF01336 OB-fold nucleic acid binding domain AP9108_01330 PF00152 tRNA synthetases class II (D, K and N) AP9108_01335 PF01494 FAD binding domain AP9108_01355 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AP9108_01355 PF14602 Hexapeptide repeat of succinyl-transferase AP9108_01355 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_01390 PF07465 Photosystem I protein M (PsaM) AP9108_01395 PF00334 Nucleoside diphosphate kinase AP9108_01400 PF03459 TOBE domain AP9108_01400 PF00005 ABC transporter AP9108_01420 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_01425 PF00990 Diguanylate cyclase, GGDEF domain AP9108_01425 PF00072 Response regulator receiver domain AP9108_01430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP9108_01430 PF00072 Response regulator receiver domain AP9108_01430 PF01627 Hpt domain AP9108_01430 PF00672 HAMP domain AP9108_01430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_01430 PF00512 His Kinase A (phospho-acceptor) domain AP9108_01435 PF00989 PAS fold AP9108_01435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_01435 PF00512 His Kinase A (phospho-acceptor) domain AP9108_01450 PF00534 Glycosyl transferases group 1 AP9108_01450 PF08323 Starch synthase catalytic domain AP9108_01460 PF00512 His Kinase A (phospho-acceptor) domain AP9108_01460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_01460 PF00989 PAS fold AP9108_01465 PF13460 NAD(P)H-binding AP9108_01470 PF01145 SPFH domain / Band 7 family AP9108_01490 PF00578 AhpC/TSA family AP9108_01495 PF02310 B12 binding domain AP9108_01495 PF13282 Domain of unknown function (DUF4070) AP9108_01495 PF04055 Radical SAM superfamily AP9108_01500 PF01791 DeoC/LacD family aldolase AP9108_01510 PF09519 HindVP restriction endonuclease AP9108_01515 PF00145 C-5 cytosine-specific DNA methylase AP9108_01540 PF01008 Initiation factor 2 subunit family AP9108_01565 PF16320 Ribosomal protein L7/L12 dimerisation domain AP9108_01565 PF00542 Ribosomal protein L7/L12 C-terminal domain AP9108_01570 PF00466 Ribosomal protein L10 AP9108_01575 PF00687 Ribosomal protein L1p/L10e family AP9108_01580 PF03946 Ribosomal protein L11, N-terminal domain AP9108_01580 PF00298 Ribosomal protein L11, RNA binding domain AP9108_01585 PF02357 Transcription termination factor nusG AP9108_01585 PF00467 KOW motif AP9108_01590 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AP9108_01600 PF01245 Ribosomal protein L19 AP9108_01605 PF02091 Glycyl-tRNA synthetase alpha subunit AP9108_01625 PF07689 KaiB domain AP9108_01625 PF00512 His Kinase A (phospho-acceptor) domain AP9108_01625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_01630 PF12323 Helix-turn-helix domain AP9108_01630 PF01385 Probable transposase AP9108_01630 PF07282 Putative transposase DNA-binding domain AP9108_01635 PF00293 NUDIX domain AP9108_01640 PF04545 Sigma-70, region 4 AP9108_01640 PF04539 Sigma-70 region 3 AP9108_01640 PF04542 Sigma-70 region 2 AP9108_01640 PF00140 Sigma-70 factor, region 1.2 AP9108_01650 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_01655 PF12911 N-terminal TM domain of oligopeptide transport permease C AP9108_01655 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_01710 PF12323 Helix-turn-helix domain AP9108_01710 PF01385 Probable transposase AP9108_01710 PF07282 Putative transposase DNA-binding domain AP9108_01775 PF00300 Histidine phosphatase superfamily (branch 1) AP9108_01780 PF05221 S-adenosyl-L-homocysteine hydrolase AP9108_01780 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AP9108_01785 PF06055 Exopolysaccharide synthesis, ExoD AP9108_01795 PF01547 Bacterial extracellular solute-binding protein AP9108_01800 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AP9108_01800 PF00156 Phosphoribosyl transferase domain AP9108_01815 PF04055 Radical SAM superfamily AP9108_01820 PF02901 Pyruvate formate lyase-like AP9108_01820 PF01228 Glycine radical AP9108_01825 PF01230 HIT domain AP9108_01855 PF03551 Transcriptional regulator PadR-like family AP9108_01860 PF00529 HlyD membrane-fusion protein of T1SS AP9108_01860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP9108_01865 PF00873 AcrB/AcrD/AcrF family AP9108_01870 PF01169 Uncharacterized protein family UPF0016 AP9108_01880 PF02446 4-alpha-glucanotransferase AP9108_01885 PF13464 Domain of unknown function (DUF4115) AP9108_01890 PF01479 S4 domain AP9108_01890 PF00849 RNA pseudouridylate synthase AP9108_01905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP9108_01910 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AP9108_01910 PF01276 Orn/Lys/Arg decarboxylase, major domain AP9108_01915 PF06071 Protein of unknown function (DUF933) AP9108_01915 PF01926 50S ribosome-binding GTPase AP9108_01920 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AP9108_01930 PF01078 Magnesium chelatase, subunit ChlI AP9108_01930 PF13335 Magnesium chelatase, subunit ChlI C-terminal AP9108_01935 PF01434 Peptidase family M41 AP9108_01935 PF17862 AAA+ lid domain AP9108_01935 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_01935 PF06480 FtsH Extracellular AP9108_01940 PF01384 Phosphate transporter family AP9108_01955 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_01985 PF00664 ABC transporter transmembrane region AP9108_01985 PF03412 Peptidase C39 family AP9108_01985 PF00005 ABC transporter AP9108_02045 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_02045 PF01348 Type II intron maturase AP9108_02050 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AP9108_02075 PF03683 Uncharacterised protein family (UPF0175) AP9108_02125 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AP9108_02170 PF02463 RecF/RecN/SMC N terminal domain AP9108_02195 PF00144 Beta-lactamase AP9108_02210 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AP9108_02215 PF04029 2-phosphosulpholactate phosphatase AP9108_02220 PF00400 WD domain, G-beta repeat AP9108_02220 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AP9108_02230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AP9108_02230 PF00128 Alpha amylase, catalytic domain AP9108_02230 PF02806 Alpha amylase, C-terminal all-beta domain AP9108_02370 PF03793 PASTA domain AP9108_02370 PF03717 Penicillin-binding Protein dimerisation domain AP9108_02370 PF00905 Penicillin binding protein transpeptidase domain AP9108_02375 PF00753 Metallo-beta-lactamase superfamily AP9108_02380 PF00890 FAD binding domain AP9108_02380 PF02910 Fumarate reductase flavoprotein C-term AP9108_02410 PF03738 Glutathionylspermidine synthase preATP-grasp AP9108_02465 PF01544 CorA-like Mg2+ transporter protein AP9108_02470 PF00069 Protein kinase domain AP9108_02475 PF01066 CDP-alcohol phosphatidyltransferase AP9108_02525 PF01960 ArgJ family AP9108_02590 PF00069 Protein kinase domain AP9108_02590 PF00805 Pentapeptide repeats (8 copies) AP9108_02600 PF01820 D-ala D-ala ligase N-terminus AP9108_02600 PF07478 D-ala D-ala ligase C-terminus AP9108_02615 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain AP9108_02625 PF00085 Thioredoxin AP9108_02700 PF00145 C-5 cytosine-specific DNA methylase AP9108_02700 PF01381 Helix-turn-helix AP9108_02745 PF00563 EAL domain AP9108_02745 PF01590 GAF domain AP9108_02745 PF00990 Diguanylate cyclase, GGDEF domain AP9108_02745 PF00360 Phytochrome region AP9108_02750 PF01050 Mannose-6-phosphate isomerase AP9108_02750 PF00483 Nucleotidyl transferase AP9108_02755 PF16916 Dimerisation domain of Zinc Transporter AP9108_02755 PF01545 Cation efflux family AP9108_02770 PF13614 AAA domain AP9108_02780 PF01578 Cytochrome C assembly protein AP9108_02800 PF01722 BolA-like protein AP9108_02805 PF00462 Glutaredoxin AP9108_02815 PF00072 Response regulator receiver domain AP9108_02815 PF00486 Transcriptional regulatory protein, C terminal AP9108_02820 PF00171 Aldehyde dehydrogenase family AP9108_02845 PF00072 Response regulator receiver domain AP9108_02845 PF01627 Hpt domain AP9108_02845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_02845 PF02895 Signal transducing histidine kinase, homodimeric domain AP9108_02845 PF01584 CheW-like domain AP9108_02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_02850 PF00989 PAS fold AP9108_02850 PF00512 His Kinase A (phospho-acceptor) domain AP9108_02850 PF18698 Histidine kinase sensor domain AP9108_02850 PF00672 HAMP domain AP9108_02880 PF01427 D-ala-D-ala dipeptidase AP9108_02890 PF06206 CpeT/CpcT family (DUF1001) AP9108_02895 PF01370 NAD dependent epimerase/dehydratase family AP9108_02910 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AP9108_02910 PF00361 Proton-conducting membrane transporter AP9108_02910 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AP9108_02930 PF03631 Virulence factor BrkB AP9108_02940 PF00291 Pyridoxal-phosphate dependent enzyme AP9108_02950 PF00487 Fatty acid desaturase AP9108_02960 PF02913 FAD linked oxidases, C-terminal domain AP9108_02960 PF01565 FAD binding domain AP9108_02965 PF00591 Glycosyl transferase family, a/b domain AP9108_02965 PF02885 Glycosyl transferase family, helical bundle domain AP9108_02970 PF18766 SWI2/SNF2 ATPase AP9108_02970 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AP9108_02970 PF12008 Type I restriction and modification enzyme - subunit R C terminal AP9108_02980 PF13476 AAA domain AP9108_02990 PF12161 HsdM N-terminal domain AP9108_02990 PF02384 N-6 DNA Methylase AP9108_02995 PF13180 PDZ domain AP9108_03000 PF00395 S-layer homology domain AP9108_03000 PF04966 Carbohydrate-selective porin, OprB family AP9108_03005 PF04966 Carbohydrate-selective porin, OprB family AP9108_03005 PF00395 S-layer homology domain AP9108_03010 PF13180 PDZ domain AP9108_03020 PF00072 Response regulator receiver domain AP9108_03020 PF00486 Transcriptional regulatory protein, C terminal AP9108_03020 PF01627 Hpt domain AP9108_03035 PF01747 ATP-sulfurylase AP9108_03035 PF14306 PUA-like domain AP9108_03165 PF09308 LuxQ, periplasmic AP9108_03165 PF00512 His Kinase A (phospho-acceptor) domain AP9108_03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_03165 PF00072 Response regulator receiver domain AP9108_03170 PF00672 HAMP domain AP9108_03170 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_03185 PF00563 EAL domain AP9108_03185 PF00990 Diguanylate cyclase, GGDEF domain AP9108_03185 PF03707 Bacterial signalling protein N terminal repeat AP9108_03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_03190 PF00512 His Kinase A (phospho-acceptor) domain AP9108_03190 PF02743 Cache domain AP9108_03210 PF00672 HAMP domain AP9108_03210 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_03215 PF02342 TerD domain AP9108_03220 PF02342 TerD domain AP9108_03225 PF01327 Polypeptide deformylase AP9108_03230 PF13180 PDZ domain AP9108_03235 PF00308 Bacterial dnaA protein AP9108_03235 PF08299 Bacterial dnaA protein helix-turn-helix AP9108_03235 PF11638 DnaA N-terminal domain AP9108_03240 PF00176 SNF2 family N-terminal domain AP9108_03240 PF00271 Helicase conserved C-terminal domain AP9108_03245 PF17827 PrmC N-terminal domain AP9108_03245 PF05175 Methyltransferase small domain AP9108_03265 PF11016 Protein of unknown function (DUF2854) AP9108_03275 PF07282 Putative transposase DNA-binding domain AP9108_03275 PF12323 Helix-turn-helix domain AP9108_03275 PF01385 Probable transposase AP9108_03280 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AP9108_03280 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AP9108_03290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AP9108_03290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AP9108_03310 PF01521 Iron-sulphur cluster biosynthesis AP9108_03330 PF00535 Glycosyl transferase family 2 AP9108_03335 PF00953 Glycosyl transferase family 4 AP9108_03335 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AP9108_03345 PF00005 ABC transporter AP9108_03355 PF01208 Uroporphyrinogen decarboxylase (URO-D) AP9108_03370 PF01106 NifU-like domain AP9108_03375 PF00072 Response regulator receiver domain AP9108_03375 PF00486 Transcriptional regulatory protein, C terminal AP9108_03375 PF01627 Hpt domain AP9108_03380 PF00512 His Kinase A (phospho-acceptor) domain AP9108_03380 PF13426 PAS domain AP9108_03380 PF14827 Double sensory domain of two-component sensor kinase AP9108_03380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_03380 PF00672 HAMP domain AP9108_03385 PF00486 Transcriptional regulatory protein, C terminal AP9108_03385 PF00072 Response regulator receiver domain AP9108_03390 PF00990 Diguanylate cyclase, GGDEF domain AP9108_03390 PF00072 Response regulator receiver domain AP9108_03415 PF01717 Cobalamin-independent synthase, Catalytic domain AP9108_03415 PF08267 Cobalamin-independent synthase, N-terminal domain AP9108_03425 PF00487 Fatty acid desaturase AP9108_03440 PF08241 Methyltransferase domain AP9108_03465 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_03465 PF01348 Type II intron maturase AP9108_03490 PF01098 Cell cycle protein AP9108_03495 PF00072 Response regulator receiver domain AP9108_03495 PF00512 His Kinase A (phospho-acceptor) domain AP9108_03495 PF08448 PAS fold AP9108_03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_03495 PF13188 PAS domain AP9108_03505 PF00156 Phosphoribosyl transferase domain AP9108_03515 PF03572 Peptidase family S41 AP9108_03515 PF00595 PDZ domain AP9108_03520 PF04551 GcpE protein AP9108_03545 PF00588 SpoU rRNA Methylase family AP9108_03555 PF01112 Asparaginase AP9108_03560 PF00486 Transcriptional regulatory protein, C terminal AP9108_03560 PF00072 Response regulator receiver domain AP9108_03565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_03565 PF01627 Hpt domain AP9108_03565 PF07194 P2 response regulator binding domain AP9108_03565 PF02895 Signal transducing histidine kinase, homodimeric domain AP9108_03565 PF01584 CheW-like domain AP9108_03570 PF01584 CheW-like domain AP9108_03575 PF00672 HAMP domain AP9108_03575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP9108_03585 PF01739 CheR methyltransferase, SAM binding domain AP9108_03590 PF00072 Response regulator receiver domain AP9108_03590 PF01339 CheB methylesterase AP9108_03605 PF09194 Restriction endonuclease BsobI AP9108_03615 PF05140 ResB-like family AP9108_03650 PF03717 Penicillin-binding Protein dimerisation domain AP9108_03650 PF00905 Penicillin binding protein transpeptidase domain AP9108_03665 PF04193 PQ loop repeat AP9108_03670 PF01788 PsbJ AP9108_03675 PF02419 PsbL protein AP9108_03680 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits AP9108_03685 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit AP9108_03685 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits AP9108_03690 PF14870 Photosynthesis system II assembly factor YCF48 AP9108_03695 PF00301 Rubredoxin AP9108_03705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AP9108_03710 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AP9108_03715 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AP9108_03725 PF00675 Insulinase (Peptidase family M16) AP9108_03725 PF05193 Peptidase M16 inactive domain AP9108_03735 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AP9108_03735 PF02769 AIR synthase related protein, C-terminal domain AP9108_03735 PF00586 AIR synthase related protein, N-terminal domain AP9108_03740 PF00156 Phosphoribosyl transferase domain AP9108_03745 PF00795 Carbon-nitrogen hydrolase AP9108_03750 PF00437 Type II/IV secretion system protein AP9108_03755 PF07689 KaiB domain AP9108_03765 PF00231 ATP synthase AP9108_03770 PF02874 ATP synthase alpha/beta family, beta-barrel domain AP9108_03770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP9108_03770 PF00306 ATP synthase alpha/beta chain, C terminal domain AP9108_03775 PF00213 ATP synthase delta (OSCP) subunit AP9108_03780 PF00430 ATP synthase B/B' CF(0) AP9108_03785 PF00430 ATP synthase B/B' CF(0) AP9108_03790 PF00137 ATP synthase subunit C AP9108_03795 PF00119 ATP synthase A chain AP9108_03800 PF12966 N-ATPase, AtpR subunit AP9108_03805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP9108_03805 PF04073 Aminoacyl-tRNA editing domain AP9108_03805 PF03129 Anticodon binding domain AP9108_03810 PF10531 SLBB domain AP9108_03820 PF00266 Aminotransferase class-V AP9108_03825 PF00155 Aminotransferase class I and II AP9108_03830 PF02540 NAD synthase AP9108_03830 PF00795 Carbon-nitrogen hydrolase AP9108_03905 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_03905 PF01348 Type II intron maturase AP9108_03935 PF05685 Putative restriction endonuclease AP9108_03940 PF05685 Putative restriction endonuclease AP9108_04270 PF01420 Type I restriction modification DNA specificity domain AP9108_04305 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_04305 PF01348 Type II intron maturase AP9108_04315 PF16363 GDP-mannose 4,6 dehydratase AP9108_04335 PF04539 Sigma-70 region 3 AP9108_04335 PF04545 Sigma-70, region 4 AP9108_04335 PF00140 Sigma-70 factor, region 1.2 AP9108_04335 PF04542 Sigma-70 region 2 AP9108_04340 PF01475 Ferric uptake regulator family AP9108_04345 PF01471 Putative peptidoglycan binding domain AP9108_04345 PF01520 N-acetylmuramoyl-L-alanine amidase AP9108_04360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP9108_04365 PF00111 2Fe-2S iron-sulfur cluster binding domain AP9108_04370 PF08486 Stage II sporulation protein AP9108_04380 PF02896 PEP-utilising enzyme, TIM barrel domain AP9108_04380 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AP9108_04380 PF00391 PEP-utilising enzyme, mobile domain AP9108_04385 PF01638 HxlR-like helix-turn-helix AP9108_04410 PF01381 Helix-turn-helix AP9108_04415 PF00571 CBS domain AP9108_04415 PF01743 Poly A polymerase head domain AP9108_04475 PF13439 Glycosyltransferase Family 4 AP9108_04480 PF00535 Glycosyl transferase family 2 AP9108_04485 PF00535 Glycosyl transferase family 2 AP9108_04510 PF00005 ABC transporter AP9108_04515 PF00072 Response regulator receiver domain AP9108_04515 PF00486 Transcriptional regulatory protein, C terminal AP9108_04555 PF01227 GTP cyclohydrolase I AP9108_04565 PF07683 Cobalamin synthesis protein cobW C-terminal domain AP9108_04565 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP9108_04575 PF08240 Alcohol dehydrogenase GroES-like domain AP9108_04575 PF00107 Zinc-binding dehydrogenase AP9108_04585 PF00364 Biotin-requiring enzyme AP9108_04585 PF02817 e3 binding domain AP9108_04585 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP9108_04610 PF01740 STAS domain AP9108_04610 PF00916 Sulfate permease family AP9108_04615 PF01740 STAS domain AP9108_04615 PF00916 Sulfate permease family AP9108_04620 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_04635 PF01979 Amidohydrolase family AP9108_04645 PF02915 Rubrerythrin AP9108_04650 PF13419 Haloacid dehalogenase-like hydrolase AP9108_04655 PF01209 ubiE/COQ5 methyltransferase family AP9108_04680 PF00931 NB-ARC domain AP9108_04680 PF00400 WD domain, G-beta repeat AP9108_04690 PF00180 Isocitrate/isopropylmalate dehydrogenase AP9108_04695 PF00582 Universal stress protein family AP9108_04700 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term AP9108_04700 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus AP9108_04710 PF14492 Elongation Factor G, domain II AP9108_04710 PF00009 Elongation factor Tu GTP binding domain AP9108_04710 PF03144 Elongation factor Tu domain 2 AP9108_04710 PF00679 Elongation factor G C-terminus AP9108_04720 PF02445 Quinolinate synthetase A protein AP9108_04730 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) AP9108_04740 PF01593 Flavin containing amine oxidoreductase AP9108_04780 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AP9108_04780 PF01676 Metalloenzyme superfamily AP9108_04785 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_04790 PF01547 Bacterial extracellular solute-binding protein AP9108_04800 PF00395 S-layer homology domain AP9108_04800 PF04966 Carbohydrate-selective porin, OprB family AP9108_04810 PF01668 SmpB protein AP9108_04815 PF10415 Fumarase C C-terminus AP9108_04815 PF00206 Lyase AP9108_04875 PF08546 Ketopantoate reductase PanE/ApbA C terminal AP9108_04875 PF02558 Ketopantoate reductase PanE/ApbA AP9108_04900 PF08669 Glycine cleavage T-protein C-terminal barrel domain AP9108_04900 PF01571 Aminomethyltransferase folate-binding domain AP9108_04910 PF00486 Transcriptional regulatory protein, C terminal AP9108_04910 PF00072 Response regulator receiver domain AP9108_04910 PF01627 Hpt domain AP9108_04915 PF00486 Transcriptional regulatory protein, C terminal AP9108_04915 PF00072 Response regulator receiver domain AP9108_04935 PF05195 Aminopeptidase P, N-terminal domain AP9108_04935 PF00557 Metallopeptidase family M24 AP9108_04940 PF02575 YbaB/EbfC DNA-binding family AP9108_04945 PF01565 FAD binding domain AP9108_04945 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AP9108_04950 PF01225 Mur ligase family, catalytic domain AP9108_04950 PF02875 Mur ligase family, glutamate ligase domain AP9108_04950 PF08245 Mur ligase middle domain AP9108_04955 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AP9108_04955 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP9108_04965 PF00425 chorismate binding enzyme AP9108_04975 PF00067 Cytochrome P450 AP9108_04980 PF01040 UbiA prenyltransferase family AP9108_04985 PF12161 HsdM N-terminal domain AP9108_04985 PF02384 N-6 DNA Methylase AP9108_04995 PF01420 Type I restriction modification DNA specificity domain AP9108_05035 PF00395 S-layer homology domain AP9108_05035 PF00963 Cohesin domain AP9108_05065 PF01809 Putative membrane protein insertion efficiency factor AP9108_05070 PF01509 TruB family pseudouridylate synthase (N terminal domain) AP9108_05070 PF09157 Pseudouridine synthase II TruB, C-terminal AP9108_05080 PF00005 ABC transporter AP9108_05100 PF00462 Glutaredoxin AP9108_05105 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AP9108_05105 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AP9108_05120 PF10369 Small subunit of acetolactate synthase AP9108_05125 PF00999 Sodium/hydrogen exchanger family AP9108_05130 PF00795 Carbon-nitrogen hydrolase AP9108_05135 PF01701 Photosystem I reaction centre subunit IX / PsaJ AP9108_05140 PF02507 Photosystem I reaction centre subunit III AP9108_05145 PF00814 Glycoprotease family AP9108_05155 PF00919 Uncharacterized protein family UPF0004 AP9108_05155 PF04055 Radical SAM superfamily AP9108_05155 PF01938 TRAM domain AP9108_05170 PF03707 Bacterial signalling protein N terminal repeat AP9108_05170 PF00563 EAL domain AP9108_05170 PF00990 Diguanylate cyclase, GGDEF domain AP9108_05180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_05180 PF09308 LuxQ, periplasmic AP9108_05180 PF00072 Response regulator receiver domain AP9108_05180 PF00512 His Kinase A (phospho-acceptor) domain AP9108_05190 PF00300 Histidine phosphatase superfamily (branch 1) AP9108_05200 PF10502 Signal peptidase, peptidase S26 AP9108_05205 PF00106 short chain dehydrogenase AP9108_05210 PF01029 NusB family AP9108_05215 PF00448 SRP54-type protein, GTPase domain AP9108_05215 PF02881 SRP54-type protein, helical bundle domain AP9108_05215 PF00448 SRP54-type protein, GTPase domain AP9108_05215 PF02881 SRP54-type protein, helical bundle domain AP9108_05220 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain AP9108_05220 PF07228 Stage II sporulation protein E (SpoIIE) AP9108_05230 PF00206 Lyase AP9108_05230 PF14698 Argininosuccinate lyase C-terminal AP9108_05265 PF00114 Pilin (bacterial filament) AP9108_05265 PF07963 Prokaryotic N-terminal methylation motif AP9108_05295 PF00226 DnaJ domain AP9108_05295 PF01556 DnaJ C terminal domain AP9108_05300 PF00012 Hsp70 protein AP9108_05305 PF01593 Flavin containing amine oxidoreductase AP9108_05320 PF00270 DEAD/DEAH box helicase AP9108_05320 PF00271 Helicase conserved C-terminal domain AP9108_05345 PF04545 Sigma-70, region 4 AP9108_05345 PF04542 Sigma-70 region 2 AP9108_05345 PF00140 Sigma-70 factor, region 1.2 AP9108_05345 PF04539 Sigma-70 region 3 AP9108_05375 PF01926 50S ribosome-binding GTPase AP9108_05375 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AP9108_05380 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AP9108_05390 PF01225 Mur ligase family, catalytic domain AP9108_05390 PF02875 Mur ligase family, glutamate ligase domain AP9108_05390 PF08245 Mur ligase middle domain AP9108_05430 PF00005 ABC transporter AP9108_05445 PF08865 Domain of unknown function (DUF1830) AP9108_05460 PF01098 Cell cycle protein AP9108_05470 PF03717 Penicillin-binding Protein dimerisation domain AP9108_05470 PF00905 Penicillin binding protein transpeptidase domain AP9108_05500 PF01235 Sodium:alanine symporter family AP9108_05505 PF00977 Histidine biosynthesis protein AP9108_05660 PF00202 Aminotransferase class-III AP9108_05670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AP9108_05680 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AP9108_05680 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AP9108_05690 PF00156 Phosphoribosyl transferase domain AP9108_05700 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_05830 PF01040 UbiA prenyltransferase family AP9108_05860 PF00535 Glycosyl transferase family 2 AP9108_05865 PF03793 PASTA domain AP9108_05865 PF00069 Protein kinase domain AP9108_05870 PF00989 PAS fold AP9108_05870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_05870 PF00512 His Kinase A (phospho-acceptor) domain AP9108_05875 PF07690 Major Facilitator Superfamily AP9108_05880 PF02272 DHHA1 domain AP9108_05880 PF17768 RecJ OB domain AP9108_05880 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AP9108_05880 PF01368 DHH family AP9108_05885 PF01432 Peptidase family M3 AP9108_05930 PF11838 ERAP1-like C-terminal domain AP9108_05930 PF01433 Peptidase family M1 domain AP9108_05935 PF00155 Aminotransferase class I and II AP9108_05940 PF00708 Acylphosphatase AP9108_05960 PF02885 Glycosyl transferase family, helical bundle domain AP9108_05960 PF00591 Glycosyl transferase family, a/b domain AP9108_05985 PF04483 Protein of unknown function (DUF565) AP9108_05995 PF03600 Citrate transporter AP9108_06010 PF02021 Uncharacterised protein family UPF0102 AP9108_06020 PF02547 Queuosine biosynthesis protein AP9108_06025 PF01783 Ribosomal L32p protein family AP9108_06035 PF02463 RecF/RecN/SMC N terminal domain AP9108_06050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP9108_06050 PF02743 Cache domain AP9108_06050 PF00672 HAMP domain AP9108_06055 PF12146 Serine aminopeptidase, S33 AP9108_06095 PF02463 RecF/RecN/SMC N terminal domain AP9108_06120 PF11283 Protein of unknown function (DUF3084) AP9108_06125 PF00027 Cyclic nucleotide-binding domain AP9108_06125 PF13545 Crp-like helix-turn-helix domain AP9108_06135 PF00475 Imidazoleglycerol-phosphate dehydratase AP9108_06140 PF03572 Peptidase family S41 AP9108_06140 PF00595 PDZ domain AP9108_06150 PF00595 PDZ domain AP9108_06150 PF03572 Peptidase family S41 AP9108_06160 PF03853 YjeF-related protein N-terminus AP9108_06160 PF01256 Carbohydrate kinase AP9108_06185 PF01790 Prolipoprotein diacylglyceryl transferase AP9108_06255 PF14245 Type IV pilin PilA AP9108_06255 PF07963 Prokaryotic N-terminal methylation motif AP9108_06270 PF13847 Methyltransferase domain AP9108_06275 PF13439 Glycosyltransferase Family 4 AP9108_06275 PF00534 Glycosyl transferases group 1 AP9108_06310 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_06315 PF01967 MoaC family AP9108_06325 PF00391 PEP-utilising enzyme, mobile domain AP9108_06325 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AP9108_06340 PF13193 AMP-binding enzyme C-terminal domain AP9108_06340 PF00501 AMP-binding enzyme AP9108_06345 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AP9108_06355 PF03023 Lipid II flippase MurJ AP9108_06375 PF01593 Flavin containing amine oxidoreductase AP9108_06390 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_06390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP9108_06395 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_06400 PF00491 Arginase family AP9108_06410 PF00696 Amino acid kinase family AP9108_06415 PF01765 Ribosome recycling factor AP9108_06420 PF01494 FAD binding domain AP9108_06425 PF00563 EAL domain AP9108_06425 PF01590 GAF domain AP9108_06425 PF00990 Diguanylate cyclase, GGDEF domain AP9108_06425 PF00360 Phytochrome region AP9108_06430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AP9108_06435 PF01523 Putative modulator of DNA gyrase AP9108_06440 PF18460 Heterocyst differentiation regulator C-terminal Hood domain AP9108_06440 PF03574 Peptidase family S48 AP9108_06450 PF01571 Aminomethyltransferase folate-binding domain AP9108_06450 PF17806 Sarcosine oxidase A3 domain AP9108_06450 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_06450 PF08669 Glycine cleavage T-protein C-terminal barrel domain AP9108_06455 PF10531 SLBB domain AP9108_06455 PF02563 Polysaccharide biosynthesis/export protein AP9108_06455 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AP9108_06460 PF13614 AAA domain AP9108_06470 PF00563 EAL domain AP9108_06470 PF00990 Diguanylate cyclase, GGDEF domain AP9108_06470 PF03707 Bacterial signalling protein N terminal repeat AP9108_06480 PF11791 Aconitate B N-terminal domain AP9108_06480 PF00330 Aconitase family (aconitate hydratase) AP9108_06480 PF06434 Aconitate hydratase 2 N-terminus AP9108_06535 PF13614 AAA domain AP9108_06560 PF00196 Bacterial regulatory proteins, luxR family AP9108_06560 PF00072 Response regulator receiver domain AP9108_06575 PF02195 ParB-like nuclease domain AP9108_06700 PF01595 Cyclin M transmembrane N-terminal domain AP9108_06700 PF03471 Transporter associated domain AP9108_06700 PF00571 CBS domain AP9108_06705 PF00781 Diacylglycerol kinase catalytic domain AP9108_06705 PF02142 MGS-like domain AP9108_06710 PF00403 Heavy-metal-associated domain AP9108_06755 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_06755 PF02861 Clp amino terminal domain, pathogenicity island component AP9108_06755 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_06755 PF17871 AAA lid domain AP9108_06755 PF07724 AAA domain (Cdc48 subfamily) AP9108_06765 PF01926 50S ribosome-binding GTPase AP9108_06765 PF13167 GTP-binding GTPase N-terminal AP9108_06765 PF16360 GTP-binding GTPase Middle Region AP9108_06770 PF00395 S-layer homology domain AP9108_06770 PF04966 Carbohydrate-selective porin, OprB family AP9108_06815 PF00920 Dehydratase family AP9108_06845 PF02469 Fasciclin domain AP9108_06850 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_06855 PF13476 AAA domain AP9108_06870 PF02310 B12 binding domain AP9108_06870 PF13282 Domain of unknown function (DUF4070) AP9108_06870 PF04055 Radical SAM superfamily AP9108_06875 PF00155 Aminotransferase class I and II AP9108_06880 PF14765 Polyketide synthase dehydratase AP9108_06880 PF00550 Phosphopantetheine attachment site AP9108_06880 PF08659 KR domain AP9108_06880 PF02801 Beta-ketoacyl synthase, C-terminal domain AP9108_06880 PF00698 Acyl transferase domain AP9108_06880 PF00109 Beta-ketoacyl synthase, N-terminal domain AP9108_06880 PF16197 Ketoacyl-synthetase C-terminal extension AP9108_06885 PF00501 AMP-binding enzyme AP9108_06895 PF00501 AMP-binding enzyme AP9108_06900 PF07690 Major Facilitator Superfamily AP9108_06915 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AP9108_06920 PF00633 Helix-hairpin-helix motif AP9108_06920 PF13662 Toprim domain AP9108_06920 PF02132 RecR protein AP9108_06945 PF05996 Ferredoxin-dependent bilin reductase AP9108_06955 PF01383 CpcD/allophycocyanin linker domain AP9108_06960 PF00502 Phycobilisome protein AP9108_06965 PF00502 Phycobilisome protein AP9108_07085 PF12697 Alpha/beta hydrolase family AP9108_07095 PF00482 Type II secretion system (T2SS), protein F AP9108_07100 PF00437 Type II/IV secretion system protein AP9108_07105 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AP9108_07105 PF00437 Type II/IV secretion system protein AP9108_07110 PF01025 GrpE AP9108_07115 PF00012 Hsp70 protein AP9108_07120 PF00684 DnaJ central domain AP9108_07120 PF01556 DnaJ C terminal domain AP9108_07120 PF00226 DnaJ domain AP9108_07130 PF03193 RsgA GTPase AP9108_07145 PF07690 Major Facilitator Superfamily AP9108_07155 PF07969 Amidohydrolase family AP9108_07160 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AP9108_07160 PF10531 SLBB domain AP9108_07160 PF02563 Polysaccharide biosynthesis/export protein AP9108_07165 PF13614 AAA domain AP9108_07185 PF16363 GDP-mannose 4,6 dehydratase AP9108_07200 PF00534 Glycosyl transferases group 1 AP9108_07200 PF13439 Glycosyltransferase Family 4 AP9108_07215 PF13932 GidA associated domain AP9108_07215 PF01134 Glucose inhibited division protein A AP9108_07240 PF00690 Cation transporter/ATPase, N-terminus AP9108_07240 PF00689 Cation transporting ATPase, C-terminus AP9108_07350 PF01348 Type II intron maturase AP9108_07350 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_07370 PF00266 Aminotransferase class-V AP9108_07375 PF01458 Uncharacterized protein family (UPF0051) AP9108_07380 PF00005 ABC transporter AP9108_07385 PF01458 Uncharacterized protein family (UPF0051) AP9108_07400 PF05491 RuvB C-terminal winged helix domain AP9108_07400 PF17864 RuvB AAA lid domain AP9108_07400 PF05496 Holliday junction DNA helicase RuvB P-loop domain AP9108_07415 PF00480 ROK family AP9108_07480 PF03447 Homoserine dehydrogenase, NAD binding domain AP9108_07480 PF00742 Homoserine dehydrogenase AP9108_07480 PF01842 ACT domain AP9108_07485 PF13180 PDZ domain AP9108_07490 PF11378 Protein of unknown function (DUF3181) AP9108_07500 PF03631 Virulence factor BrkB AP9108_07520 PF01297 Zinc-uptake complex component A periplasmic AP9108_07525 PF00005 ABC transporter AP9108_07530 PF00950 ABC 3 transport family AP9108_07535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP9108_07535 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_07535 PF00403 Heavy-metal-associated domain AP9108_07545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP9108_07565 PF00226 DnaJ domain AP9108_07565 PF01556 DnaJ C terminal domain AP9108_07565 PF00684 DnaJ central domain AP9108_07575 PF01255 Putative undecaprenyl diphosphate synthase AP9108_07580 PF02457 DisA bacterial checkpoint controller nucleotide-binding AP9108_07585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AP9108_07585 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AP9108_07595 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_07595 PF07724 AAA domain (Cdc48 subfamily) AP9108_07595 PF17871 AAA lid domain AP9108_07595 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_07595 PF02861 Clp amino terminal domain, pathogenicity island component AP9108_07605 PF02597 ThiS family AP9108_07610 PF00291 Pyridoxal-phosphate dependent enzyme AP9108_07615 PF00883 Cytosol aminopeptidase family, catalytic domain AP9108_07615 PF02789 Cytosol aminopeptidase family, N-terminal domain AP9108_07625 PF13426 PAS domain AP9108_07625 PF13188 PAS domain AP9108_07625 PF00989 PAS fold AP9108_07625 PF00512 His Kinase A (phospho-acceptor) domain AP9108_07625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_07635 PF00293 NUDIX domain AP9108_07650 PF01546 Peptidase family M20/M25/M40 AP9108_07650 PF07687 Peptidase dimerisation domain AP9108_07660 PF00561 alpha/beta hydrolase fold AP9108_07665 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_07670 PF00156 Phosphoribosyl transferase domain AP9108_07690 PF00551 Formyl transferase AP9108_07690 PF02911 Formyl transferase, C-terminal domain AP9108_07695 PF02397 Bacterial sugar transferase AP9108_07705 PF02617 ATP-dependent Clp protease adaptor protein ClpS AP9108_07715 PF00994 Probable molybdopterin binding domain AP9108_07720 PF01966 HD domain AP9108_07725 PF01329 Pterin 4 alpha carbinolamine dehydratase AP9108_07730 PF00188 Cysteine-rich secretory protein family AP9108_07740 PF05175 Methyltransferase small domain AP9108_07755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP9108_07760 PF00873 AcrB/AcrD/AcrF family AP9108_07790 PF01658 Myo-inositol-1-phosphate synthase AP9108_07795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP9108_07955 PF02397 Bacterial sugar transferase AP9108_07960 PF16363 GDP-mannose 4,6 dehydratase AP9108_07965 PF01370 NAD dependent epimerase/dehydratase family AP9108_07970 PF01812 5-formyltetrahydrofolate cyclo-ligase family AP9108_07975 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_07980 PF00583 Acetyltransferase (GNAT) family AP9108_08010 PF01218 Coproporphyrinogen III oxidase AP9108_08015 PF01740 STAS domain AP9108_08020 PF11264 Thylakoid formation protein AP9108_08045 PF00462 Glutaredoxin AP9108_08055 PF04012 PspA/IM30 family AP9108_08070 PF00072 Response regulator receiver domain AP9108_08070 PF12452 Protein of unknown function (DUF3685) AP9108_08080 PF00149 Calcineurin-like phosphoesterase AP9108_08100 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_08115 PF01061 ABC-2 type transporter AP9108_08115 PF00498 FHA domain AP9108_08115 PF00005 ABC transporter AP9108_08130 PF00535 Glycosyl transferase family 2 AP9108_08135 PF00535 Glycosyl transferase family 2 AP9108_08140 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_08145 PF03040 CemA family AP9108_08235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_08235 PF00512 His Kinase A (phospho-acceptor) domain AP9108_08235 PF00672 HAMP domain AP9108_08245 PF00392 Bacterial regulatory proteins, gntR family AP9108_08250 PF01738 Dienelactone hydrolase family AP9108_08255 PF00575 S1 RNA binding domain AP9108_08260 PF01869 BadF/BadG/BcrA/BcrD ATPase family AP9108_08275 PF00581 Rhodanese-like domain AP9108_08295 PF04607 Region found in RelA / SpoT proteins AP9108_08295 PF02824 TGS domain AP9108_08295 PF13291 ACT domain AP9108_08355 PF00069 Protein kinase domain AP9108_08410 PF07724 AAA domain (Cdc48 subfamily) AP9108_08410 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_08410 PF02861 Clp amino terminal domain, pathogenicity island component AP9108_08410 PF17871 AAA lid domain AP9108_08410 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_08435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_08435 PF00512 His Kinase A (phospho-acceptor) domain AP9108_08435 PF00989 PAS fold AP9108_08435 PF13426 PAS domain AP9108_08435 PF13188 PAS domain AP9108_08455 PF01593 Flavin containing amine oxidoreductase AP9108_08480 PF00403 Heavy-metal-associated domain AP9108_08490 PF12169 DNA polymerase III subunits gamma and tau domain III AP9108_08505 PF01383 CpcD/allophycocyanin linker domain AP9108_08510 PF00427 Phycobilisome Linker polypeptide AP9108_08510 PF01383 CpcD/allophycocyanin linker domain AP9108_08515 PF01383 CpcD/allophycocyanin linker domain AP9108_08515 PF00427 Phycobilisome Linker polypeptide AP9108_08520 PF00502 Phycobilisome protein AP9108_08525 PF00502 Phycobilisome protein AP9108_08540 PF00483 Nucleotidyl transferase AP9108_08545 PF00436 Single-strand binding protein family AP9108_08550 PF00989 PAS fold AP9108_08550 PF00512 His Kinase A (phospho-acceptor) domain AP9108_08550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_08550 PF16736 Single Cache-like AP9108_08575 PF00072 Response regulator receiver domain AP9108_08575 PF00486 Transcriptional regulatory protein, C terminal AP9108_08585 PF03099 Biotin/lipoate A/B protein ligase family AP9108_08590 PF01348 Type II intron maturase AP9108_08590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_08595 PF01348 Type II intron maturase AP9108_08595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_08630 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_08630 PF01348 Type II intron maturase AP9108_08640 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AP9108_08640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AP9108_08665 PF01348 Type II intron maturase AP9108_08665 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_08695 PF16861 Carbamoyltransferase C-terminus AP9108_08695 PF02543 Carbamoyltransferase N-terminus AP9108_08720 PF13183 4Fe-4S dicluster domain AP9108_08720 PF02913 FAD linked oxidases, C-terminal domain AP9108_08720 PF01565 FAD binding domain AP9108_08730 PF00574 Clp protease AP9108_08740 PF17876 Cold shock domain AP9108_08740 PF08206 Ribonuclease B OB domain AP9108_08740 PF00773 RNB domain AP9108_08740 PF00575 S1 RNA binding domain AP9108_08790 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_08790 PF00672 HAMP domain AP9108_08800 PF00216 Bacterial DNA-binding protein AP9108_08810 PF02514 CobN/Magnesium Chelatase AP9108_08810 PF11965 Domain of unknown function (DUF3479) AP9108_08815 PF02386 Cation transport protein AP9108_08820 PF02254 TrkA-N domain AP9108_08820 PF02080 TrkA-C domain AP9108_08855 PF03725 3' exoribonuclease family, domain 2 AP9108_08855 PF01138 3' exoribonuclease family, domain 1 AP9108_08860 PF00963 Cohesin domain AP9108_08860 PF00395 S-layer homology domain AP9108_08880 PF00535 Glycosyl transferase family 2 AP9108_08920 PF13439 Glycosyltransferase Family 4 AP9108_08920 PF00534 Glycosyl transferases group 1 AP9108_08935 PF10397 Adenylosuccinate lyase C-terminus AP9108_08935 PF00206 Lyase AP9108_08985 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_08985 PF01348 Type II intron maturase AP9108_09105 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP9108_09110 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AP9108_09115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP9108_09115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AP9108_09125 PF00365 Phosphofructokinase AP9108_09135 PF13202 EF hand AP9108_09135 PF00923 Transaldolase/Fructose-6-phosphate aldolase AP9108_09175 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_09175 PF01348 Type II intron maturase AP9108_09190 PF16363 GDP-mannose 4,6 dehydratase AP9108_09205 PF02562 PhoH-like protein AP9108_09215 PF00886 Ribosomal protein S16 AP9108_09270 PF00005 ABC transporter AP9108_09285 PF00124 Photosynthetic reaction centre protein AP9108_09350 PF00478 IMP dehydrogenase / GMP reductase domain AP9108_09350 PF00571 CBS domain AP9108_09360 PF01737 YCF9 AP9108_09365 PF00885 6,7-dimethyl-8-ribityllumazine synthase AP9108_09385 PF07662 Na+ dependent nucleoside transporter C-terminus AP9108_09385 PF01773 Na+ dependent nucleoside transporter N-terminus AP9108_09385 PF07670 Nucleoside recognition AP9108_09400 PF09190 DALR domain AP9108_09400 PF01406 tRNA synthetases class I (C) catalytic domain AP9108_09405 PF01502 Phosphoribosyl-AMP cyclohydrolase AP9108_09410 PF07683 Cobalamin synthesis protein cobW C-terminal domain AP9108_09410 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP9108_09415 PF02657 Fe-S metabolism associated domain AP9108_09420 PF00490 Delta-aminolevulinic acid dehydratase AP9108_09440 PF00909 Ammonium Transporter Family AP9108_09450 PF00731 AIR carboxylase AP9108_09465 PF01979 Amidohydrolase family AP9108_09500 PF00561 alpha/beta hydrolase fold AP9108_09505 PF00154 recA bacterial DNA recombination protein AP9108_09510 PF00180 Isocitrate/isopropylmalate dehydrogenase AP9108_09515 PF01293 Phosphoenolpyruvate carboxykinase AP9108_09525 PF03453 MoeA N-terminal region (domain I and II) AP9108_09525 PF00994 Probable molybdopterin binding domain AP9108_09525 PF03454 MoeA C-terminal region (domain IV) AP9108_09530 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AP9108_09530 PF12557 Cob(I)alamin adenosyltransferase N terminal AP9108_09535 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP9108_09555 PF01627 Hpt domain AP9108_09555 PF00512 His Kinase A (phospho-acceptor) domain AP9108_09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_09555 PF00072 Response regulator receiver domain AP9108_09565 PF16363 GDP-mannose 4,6 dehydratase AP9108_09575 PF02469 Fasciclin domain AP9108_09590 PF02885 Glycosyl transferase family, helical bundle domain AP9108_09590 PF00117 Glutamine amidotransferase class-I AP9108_09590 PF00591 Glycosyl transferase family, a/b domain AP9108_09595 PF01219 Prokaryotic diacylglycerol kinase AP9108_09600 PF02130 Uncharacterized protein family UPF0054 AP9108_09635 PF07282 Putative transposase DNA-binding domain AP9108_09635 PF12323 Helix-turn-helix domain AP9108_09635 PF01385 Probable transposase AP9108_09795 PF01743 Poly A polymerase head domain AP9108_09795 PF12627 Probable RNA and SrmB- binding site of polymerase A AP9108_09795 PF13735 tRNA nucleotidyltransferase domain 2 putative AP9108_09815 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_09815 PF01348 Type II intron maturase AP9108_09850 PF00069 Protein kinase domain AP9108_09850 PF00805 Pentapeptide repeats (8 copies) AP9108_09925 PF00814 Glycoprotease family AP9108_09935 PF01891 Cobalt uptake substrate-specific transmembrane region AP9108_09960 PF01471 Putative peptidoglycan binding domain AP9108_09985 PF02875 Mur ligase family, glutamate ligase domain AP9108_09985 PF08245 Mur ligase middle domain AP9108_09985 PF08443 RimK-like ATP-grasp domain AP9108_09990 PF03575 Peptidase family S51 AP9108_10000 PF01746 tRNA (Guanine-1)-methyltransferase AP9108_10015 PF00128 Alpha amylase, catalytic domain AP9108_10020 PF00582 Universal stress protein family AP9108_10020 PF00999 Sodium/hydrogen exchanger family AP9108_10095 PF03441 FAD binding domain of DNA photolyase AP9108_10095 PF00875 DNA photolyase AP9108_10100 PF02629 CoA binding domain AP9108_10100 PF00549 CoA-ligase AP9108_10105 PF08442 ATP-grasp domain AP9108_10105 PF00549 CoA-ligase AP9108_10120 PF07085 DRTGG domain AP9108_10260 PF04542 Sigma-70 region 2 AP9108_10260 PF04539 Sigma-70 region 3 AP9108_10260 PF04545 Sigma-70, region 4 AP9108_10265 PF01597 Glycine cleavage H-protein AP9108_10295 PF12867 DinB superfamily AP9108_10295 PF03781 Sulfatase-modifying factor enzyme 1 AP9108_10300 PF00561 alpha/beta hydrolase fold AP9108_10315 PF00223 Photosystem I psaA/psaB protein AP9108_10320 PF00223 Photosystem I psaA/psaB protein AP9108_10325 PF00677 Lumazine binding domain AP9108_10335 PF00248 Aldo/keto reductase family AP9108_10350 PF00069 Protein kinase domain AP9108_10355 PF03466 LysR substrate binding domain AP9108_10355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP9108_10360 PF03466 LysR substrate binding domain AP9108_10360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP9108_10370 PF00085 Thioredoxin AP9108_10380 PF00923 Transaldolase/Fructose-6-phosphate aldolase AP9108_10385 PF00456 Transketolase, thiamine diphosphate binding domain AP9108_10385 PF02780 Transketolase, C-terminal domain AP9108_10385 PF02779 Transketolase, pyrimidine binding domain AP9108_10390 PF00075 RNase H AP9108_10395 PF01808 AICARFT/IMPCHase bienzyme AP9108_10395 PF02142 MGS-like domain AP9108_10400 PF00759 Glycosyl hydrolase family 9 AP9108_10400 PF02927 Cellulase N-terminal ig-like domain AP9108_10405 PF00486 Transcriptional regulatory protein, C terminal AP9108_10405 PF00072 Response regulator receiver domain AP9108_10415 PF02080 TrkA-C domain AP9108_10415 PF03600 Citrate transporter AP9108_10420 PF03764 Elongation factor G, domain IV AP9108_10420 PF14492 Elongation Factor G, domain II AP9108_10420 PF00679 Elongation factor G C-terminus AP9108_10420 PF00009 Elongation factor Tu GTP binding domain AP9108_10425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP9108_10425 PF00205 Thiamine pyrophosphate enzyme, central domain AP9108_10425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP9108_10435 PF00535 Glycosyl transferase family 2 AP9108_10475 PF08007 Cupin superfamily protein AP9108_10490 PF00486 Transcriptional regulatory protein, C terminal AP9108_10490 PF00072 Response regulator receiver domain AP9108_10495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_10495 PF00512 His Kinase A (phospho-acceptor) domain AP9108_10495 PF00672 HAMP domain AP9108_10495 PF13426 PAS domain AP9108_10510 PF00297 Ribosomal protein L3 AP9108_10515 PF00573 Ribosomal protein L4/L1 family AP9108_10520 PF00276 Ribosomal protein L23 AP9108_10525 PF00181 Ribosomal Proteins L2, RNA binding domain AP9108_10525 PF03947 Ribosomal Proteins L2, C-terminal domain AP9108_10530 PF00203 Ribosomal protein S19 AP9108_10540 PF00237 Ribosomal protein L22p/L17e AP9108_10545 PF00189 Ribosomal protein S3, C-terminal domain AP9108_10545 PF07650 KH domain AP9108_10550 PF00252 Ribosomal protein L16p/L10e AP9108_10555 PF00831 Ribosomal L29 protein AP9108_10560 PF00366 Ribosomal protein S17 AP9108_10565 PF00238 Ribosomal protein L14p/L23e AP9108_10570 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AP9108_10570 PF00467 KOW motif AP9108_10575 PF00673 ribosomal L5P family C-terminus AP9108_10575 PF00281 Ribosomal protein L5 AP9108_10580 PF00410 Ribosomal protein S8 AP9108_10590 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AP9108_10595 PF00333 Ribosomal protein S5, N-terminal domain AP9108_10595 PF03719 Ribosomal protein S5, C-terminal domain AP9108_10600 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AP9108_10605 PF00344 SecY translocase AP9108_10615 PF01176 Translation initiation factor 1A / IF-1 AP9108_10620 PF00444 Ribosomal protein L36 AP9108_10625 PF00416 Ribosomal protein S13/S18 AP9108_10630 PF00411 Ribosomal protein S11 AP9108_10635 PF01000 RNA polymerase Rpb3/RpoA insert domain AP9108_10635 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AP9108_10635 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AP9108_10640 PF01196 Ribosomal protein L17 AP9108_10645 PF01416 tRNA pseudouridine synthase AP9108_10650 PF00572 Ribosomal protein L13 AP9108_10655 PF00380 Ribosomal protein S9/S16 AP9108_10660 PF01197 Ribosomal protein L31 AP9108_10670 PF12323 Helix-turn-helix domain AP9108_10670 PF07282 Putative transposase DNA-binding domain AP9108_10670 PF01385 Probable transposase AP9108_10680 PF00158 Sigma-54 interaction domain AP9108_10680 PF00072 Response regulator receiver domain AP9108_10680 PF02954 Bacterial regulatory protein, Fis family AP9108_10685 PF12848 ABC transporter AP9108_10685 PF16326 ABC transporter C-terminal domain AP9108_10685 PF00005 ABC transporter AP9108_10695 PF00072 Response regulator receiver domain AP9108_10715 PF01556 DnaJ C terminal domain AP9108_10715 PF00226 DnaJ domain AP9108_10725 PF00483 Nucleotidyl transferase AP9108_10740 PF08241 Methyltransferase domain AP9108_10750 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AP9108_10750 PF01872 RibD C-terminal domain AP9108_10755 PF03055 Retinal pigment epithelial membrane protein AP9108_10760 PF03092 BT1 family AP9108_10790 PF00082 Subtilase family AP9108_10800 PF00931 NB-ARC domain AP9108_10800 PF00400 WD domain, G-beta repeat AP9108_10850 PF01370 NAD dependent epimerase/dehydratase family AP9108_10865 PF00989 PAS fold AP9108_10865 PF00512 His Kinase A (phospho-acceptor) domain AP9108_10865 PF00672 HAMP domain AP9108_10865 PF18698 Histidine kinase sensor domain AP9108_10865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_10870 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_10875 PF00486 Transcriptional regulatory protein, C terminal AP9108_10875 PF00072 Response regulator receiver domain AP9108_10890 PF03109 ABC1 family AP9108_10900 PF06470 SMC proteins Flexible Hinge Domain AP9108_10900 PF02463 RecF/RecN/SMC N terminal domain AP9108_10935 PF03912 Psb28 protein AP9108_10940 PF00218 Indole-3-glycerol phosphate synthase AP9108_10955 PF00398 Ribosomal RNA adenine dimethylase AP9108_10960 PF08544 GHMP kinases C terminal AP9108_10960 PF00288 GHMP kinases N terminal domain AP9108_10970 PF03952 Enolase, N-terminal domain AP9108_10970 PF00113 Enolase, C-terminal TIM barrel domain AP9108_10975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP9108_10975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP9108_10995 PF01782 RimM N-terminal domain AP9108_10995 PF05239 PRC-barrel domain AP9108_11020 PF00582 Universal stress protein family AP9108_11030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AP9108_11035 PF04960 Glutaminase AP9108_11060 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AP9108_11065 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AP9108_11125 PF02469 Fasciclin domain AP9108_11130 PF02405 Permease MlaE AP9108_11160 PF00111 2Fe-2S iron-sulfur cluster binding domain AP9108_11170 PF03793 PASTA domain AP9108_11170 PF00069 Protein kinase domain AP9108_11210 PF04461 Protein of unknown function (DUF520) AP9108_11225 PF01348 Type II intron maturase AP9108_11225 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_11265 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_11265 PF01348 Type II intron maturase AP9108_11285 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_11285 PF01348 Type II intron maturase AP9108_11290 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_11290 PF01348 Type II intron maturase AP9108_11480 PF00753 Metallo-beta-lactamase superfamily AP9108_11495 PF01385 Probable transposase AP9108_11495 PF12323 Helix-turn-helix domain AP9108_11495 PF07282 Putative transposase DNA-binding domain AP9108_11505 PF17284 Spermidine synthase tetramerisation domain AP9108_11510 PF01063 Amino-transferase class IV AP9108_11520 PF01678 Diaminopimelate epimerase AP9108_11535 PF04960 Glutaminase AP9108_11575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_11575 PF01348 Type II intron maturase AP9108_11590 PF02152 Dihydroneopterin aldolase AP9108_11640 PF10742 Protein of unknown function (DUF2555) AP9108_11645 PF04127 DNA / pantothenate metabolism flavoprotein AP9108_11645 PF02441 Flavoprotein AP9108_11655 PF01494 FAD binding domain AP9108_11675 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_11675 PF06426 Serine acetyltransferase, N-terminal AP9108_11805 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_11805 PF01348 Type II intron maturase AP9108_11875 PF00072 Response regulator receiver domain AP9108_11875 PF00486 Transcriptional regulatory protein, C terminal AP9108_11885 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AP9108_11885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP9108_11890 PF02895 Signal transducing histidine kinase, homodimeric domain AP9108_11890 PF01627 Hpt domain AP9108_11890 PF00072 Response regulator receiver domain AP9108_11890 PF01584 CheW-like domain AP9108_11890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_11910 PF01434 Peptidase family M41 AP9108_11910 PF06480 FtsH Extracellular AP9108_11910 PF17862 AAA+ lid domain AP9108_11910 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_11930 PF01348 Type II intron maturase AP9108_11930 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_11950 PF00360 Phytochrome region AP9108_11950 PF00990 Diguanylate cyclase, GGDEF domain AP9108_11950 PF01590 GAF domain AP9108_11950 PF00563 EAL domain AP9108_11960 PF00877 NlpC/P60 family AP9108_11960 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AP9108_11985 PF01797 Transposase IS200 like AP9108_12000 PF02545 Maf-like protein AP9108_12030 PF01425 Amidase AP9108_12040 PF00005 ABC transporter AP9108_12045 PF01933 Uncharacterised protein family UPF0052 AP9108_12055 PF01471 Putative peptidoglycan binding domain AP9108_12075 PF02472 Biopolymer transport protein ExbD/TolR AP9108_12095 PF00578 AhpC/TSA family AP9108_12130 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AP9108_12145 PF02872 5'-nucleotidase, C-terminal domain AP9108_12145 PF00149 Calcineurin-like phosphoesterase AP9108_12150 PF03480 Bacterial extracellular solute-binding protein, family 7 AP9108_12155 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AP9108_12155 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AP9108_12170 PF00111 2Fe-2S iron-sulfur cluster binding domain AP9108_12180 PF00459 Inositol monophosphatase family AP9108_12190 PF13393 Histidyl-tRNA synthetase AP9108_12195 PF00155 Aminotransferase class I and II AP9108_12200 PF04760 Translation initiation factor IF-2, N-terminal region AP9108_12200 PF00009 Elongation factor Tu GTP binding domain AP9108_12200 PF11987 Translation-initiation factor 2 AP9108_12210 PF13184 NusA-like KH domain AP9108_12210 PF00575 S1 RNA binding domain AP9108_12210 PF08529 NusA N-terminal domain AP9108_12215 PF02576 RimP N-terminal domain AP9108_12225 PF00535 Glycosyl transferase family 2 AP9108_12230 PF01250 Ribosomal protein S6 AP9108_12240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_12240 PF00512 His Kinase A (phospho-acceptor) domain AP9108_12240 PF13188 PAS domain AP9108_12240 PF08448 PAS fold AP9108_12240 PF00072 Response regulator receiver domain AP9108_12245 PF04509 CheC-like family AP9108_12250 PF00072 Response regulator receiver domain AP9108_12260 PF04324 BFD-like [2Fe-2S] binding domain AP9108_12260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_12265 PF01266 FAD dependent oxidoreductase AP9108_12275 PF00950 ABC 3 transport family AP9108_12280 PF00005 ABC transporter AP9108_12285 PF01297 Zinc-uptake complex component A periplasmic AP9108_12290 PF00773 RNB domain AP9108_12295 PF01084 Ribosomal protein S18 AP9108_12300 PF00471 Ribosomal protein L33 AP9108_12335 PF00155 Aminotransferase class I and II AP9108_12340 PF00085 Thioredoxin AP9108_12350 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AP9108_12355 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AP9108_12355 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AP9108_12355 PF01488 Shikimate / quinate 5-dehydrogenase AP9108_12360 PF00133 tRNA synthetases class I (I, L, M and V) AP9108_12360 PF08264 Anticodon-binding domain of tRNA AP9108_12360 PF10458 Valyl tRNA synthetase tRNA binding arm AP9108_12380 PF00400 WD domain, G-beta repeat AP9108_12385 PF01300 Telomere recombination AP9108_12390 PF01969 Protein of unknown function DUF111 AP9108_12395 PF17755 UvrA DNA-binding domain AP9108_12395 PF17760 UvrA interaction domain AP9108_12400 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AP9108_12400 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AP9108_12405 PF00596 Class II Aldolase and Adducin N-terminal domain AP9108_12420 PF13411 MerR HTH family regulatory protein AP9108_12425 PF02570 Precorrin-8X methylmutase AP9108_12435 PF05173 Dihydrodipicolinate reductase, C-terminus AP9108_12435 PF01113 Dihydrodipicolinate reductase, N-terminus AP9108_12455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP9108_12455 PF00005 ABC transporter AP9108_12460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP9108_12460 PF00005 ABC transporter AP9108_12475 PF07859 alpha/beta hydrolase fold AP9108_12495 PF02698 DUF218 domain AP9108_12505 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AP9108_12505 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AP9108_12515 PF03808 Glycosyl transferase WecB/TagA/CpsF family AP9108_12520 PF00535 Glycosyl transferase family 2 AP9108_12530 PF00005 ABC transporter AP9108_12530 PF00664 ABC transporter transmembrane region AP9108_12540 PF00534 Glycosyl transferases group 1 AP9108_12540 PF13439 Glycosyltransferase Family 4 AP9108_12545 PF00534 Glycosyl transferases group 1 AP9108_12555 PF13439 Glycosyltransferase Family 4 AP9108_12555 PF00534 Glycosyl transferases group 1 AP9108_12565 PF00535 Glycosyl transferase family 2 AP9108_12575 PF13439 Glycosyltransferase Family 4 AP9108_12580 PF13439 Glycosyltransferase Family 4 AP9108_12585 PF00535 Glycosyl transferase family 2 AP9108_12590 PF00534 Glycosyl transferases group 1 AP9108_12595 PF00534 Glycosyl transferases group 1 AP9108_12595 PF13439 Glycosyltransferase Family 4 AP9108_12610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AP9108_12620 PF00805 Pentapeptide repeats (8 copies) AP9108_12620 PF00069 Protein kinase domain AP9108_12625 PF00072 Response regulator receiver domain AP9108_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_12630 PF00512 His Kinase A (phospho-acceptor) domain AP9108_12630 PF09308 LuxQ, periplasmic AP9108_12630 PF00072 Response regulator receiver domain AP9108_12640 PF03459 TOBE domain AP9108_12640 PF00005 ABC transporter AP9108_12640 PF17912 MalK OB fold domain AP9108_12645 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_12650 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_12655 PF01547 Bacterial extracellular solute-binding protein AP9108_12660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP9108_12660 PF02403 Seryl-tRNA synthetase N-terminal domain AP9108_12665 PF00893 Small Multidrug Resistance protein AP9108_12685 PF00805 Pentapeptide repeats (8 copies) AP9108_12685 PF00069 Protein kinase domain AP9108_12690 PF00069 Protein kinase domain AP9108_12690 PF00805 Pentapeptide repeats (8 copies) AP9108_12695 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_12695 PF00072 Response regulator receiver domain AP9108_12710 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_12715 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AP9108_12725 PF00005 ABC transporter AP9108_12730 PF00291 Pyridoxal-phosphate dependent enzyme AP9108_12735 PF00563 EAL domain AP9108_12735 PF00990 Diguanylate cyclase, GGDEF domain AP9108_12735 PF03707 Bacterial signalling protein N terminal repeat AP9108_12745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AP9108_12750 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AP9108_12755 PF13237 4Fe-4S dicluster domain AP9108_12760 PF00146 NADH dehydrogenase AP9108_12765 PF00285 Citrate synthase, C-terminal domain AP9108_12770 PF00300 Histidine phosphatase superfamily (branch 1) AP9108_12780 PF01168 Alanine racemase, N-terminal domain AP9108_12780 PF00842 Alanine racemase, C-terminal domain AP9108_12790 PF05193 Peptidase M16 inactive domain AP9108_12790 PF00675 Insulinase (Peptidase family M16) AP9108_12835 PF00672 HAMP domain AP9108_12835 PF01627 Hpt domain AP9108_12835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP9108_12835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_12835 PF00512 His Kinase A (phospho-acceptor) domain AP9108_12835 PF00072 Response regulator receiver domain AP9108_12845 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AP9108_12860 PF10410 DnaB-helicase binding domain of primase AP9108_12860 PF01807 CHC2 zinc finger AP9108_12860 PF08275 DNA primase catalytic core, N-terminal domain AP9108_12880 PF02637 GatB domain AP9108_12880 PF02934 GatB/GatE catalytic domain AP9108_12890 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_12890 PF01348 Type II intron maturase AP9108_12900 PF07238 PilZ domain AP9108_12900 PF00535 Glycosyl transferase family 2 AP9108_12900 PF03552 Cellulose synthase AP9108_13035 PF11700 Vacuole effluxer Atg22 like AP9108_13040 PF08865 Domain of unknown function (DUF1830) AP9108_13050 PF03707 Bacterial signalling protein N terminal repeat AP9108_13050 PF00990 Diguanylate cyclase, GGDEF domain AP9108_13050 PF00563 EAL domain AP9108_13065 PF00072 Response regulator receiver domain AP9108_13065 PF00486 Transcriptional regulatory protein, C terminal AP9108_13085 PF00582 Universal stress protein family AP9108_13095 PF01649 Ribosomal protein S20 AP9108_13100 PF01026 TatD related DNase AP9108_13115 PF04998 RNA polymerase Rpb1, domain 5 AP9108_13115 PF05000 RNA polymerase Rpb1, domain 4 AP9108_13115 PF04983 RNA polymerase Rpb1, domain 3 AP9108_13230 PF03209 PUCC protein AP9108_13245 PF00753 Metallo-beta-lactamase superfamily AP9108_13245 PF16123 Hydroxyacylglutathione hydrolase C-terminus AP9108_13260 PF00072 Response regulator receiver domain AP9108_13260 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_13295 PF13181 Tetratricopeptide repeat AP9108_13295 PF00535 Glycosyl transferase family 2 AP9108_13305 PF01118 Semialdehyde dehydrogenase, NAD binding domain AP9108_13305 PF02774 Semialdehyde dehydrogenase, dimerisation domain AP9108_13310 PF00582 Universal stress protein family AP9108_13315 PF03061 Thioesterase superfamily AP9108_13325 PF00563 EAL domain AP9108_13325 PF00990 Diguanylate cyclase, GGDEF domain AP9108_13325 PF03707 Bacterial signalling protein N terminal repeat AP9108_13335 PF00990 Diguanylate cyclase, GGDEF domain AP9108_13335 PF00563 EAL domain AP9108_13335 PF01590 GAF domain AP9108_13335 PF00360 Phytochrome region AP9108_13345 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) AP9108_13355 PF00425 chorismate binding enzyme AP9108_13355 PF04715 Anthranilate synthase component I, N terminal region AP9108_13360 PF01467 Cytidylyltransferase-like AP9108_13360 PF00294 pfkB family carbohydrate kinase AP9108_13365 PF00072 Response regulator receiver domain AP9108_13370 PF04055 Radical SAM superfamily AP9108_13380 PF04434 SWIM zinc finger AP9108_13415 PF00005 ABC transporter AP9108_13420 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_13425 PF00005 ABC transporter AP9108_13435 PF02560 Cyanate lyase C-terminal domain AP9108_13465 PF13579 Glycosyl transferase 4-like domain AP9108_13465 PF00534 Glycosyl transferases group 1 AP9108_13475 PF01370 NAD dependent epimerase/dehydratase family AP9108_13475 PF08338 Domain of unknown function (DUF1731) AP9108_13480 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AP9108_13480 PF01926 50S ribosome-binding GTPase AP9108_13495 PF08240 Alcohol dehydrogenase GroES-like domain AP9108_13495 PF00107 Zinc-binding dehydrogenase AP9108_13500 PF00672 HAMP domain AP9108_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_13500 PF00512 His Kinase A (phospho-acceptor) domain AP9108_13500 PF01627 Hpt domain AP9108_13500 PF00072 Response regulator receiver domain AP9108_13500 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP9108_13530 PF01348 Type II intron maturase AP9108_13530 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_13550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_13550 PF01348 Type II intron maturase AP9108_13570 PF01625 Peptide methionine sulfoxide reductase AP9108_13580 PF08264 Anticodon-binding domain of tRNA AP9108_13580 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase AP9108_13580 PF00133 tRNA synthetases class I (I, L, M and V) AP9108_13580 PF10458 Valyl tRNA synthetase tRNA binding arm AP9108_13585 PF00749 tRNA synthetases class I (E and Q), catalytic domain AP9108_13630 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_13630 PF01348 Type II intron maturase AP9108_13670 PF09827 CRISPR associated protein Cas2 AP9108_13770 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_13770 PF01348 Type II intron maturase AP9108_13795 PF10716 NADH dehydrogenase transmembrane subunit AP9108_13810 PF00248 Aldo/keto reductase family AP9108_13850 PF00571 CBS domain AP9108_13850 PF00291 Pyridoxal-phosphate dependent enzyme AP9108_13855 PF10417 C-terminal domain of 1-Cys peroxiredoxin AP9108_13855 PF00578 AhpC/TSA family AP9108_13860 PF02401 LytB protein AP9108_13865 PF00183 Hsp90 protein AP9108_13870 PF00535 Glycosyl transferase family 2 AP9108_13875 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AP9108_13875 PF00535 Glycosyl transferase family 2 AP9108_13880 PF00535 Glycosyl transferase family 2 AP9108_13885 PF17871 AAA lid domain AP9108_13885 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_13885 PF02861 Clp amino terminal domain, pathogenicity island component AP9108_13885 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_13885 PF07724 AAA domain (Cdc48 subfamily) AP9108_13890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP9108_13905 PF03069 Acetamidase/Formamidase family AP9108_13925 PF07687 Peptidase dimerisation domain AP9108_13925 PF01546 Peptidase family M20/M25/M40 AP9108_14200 PF00155 Aminotransferase class I and II AP9108_14205 PF17676 LD-carboxypeptidase C-terminal domain AP9108_14205 PF02016 LD-carboxypeptidase N-terminal domain AP9108_14210 PF02567 Phenazine biosynthesis-like protein AP9108_14215 PF00425 chorismate binding enzyme AP9108_14215 PF04715 Anthranilate synthase component I, N terminal region AP9108_14220 PF02531 PsaD AP9108_14395 PF01774 UreD urease accessory protein AP9108_14400 PF00547 Urease, gamma subunit AP9108_14405 PF00699 Urease beta subunit AP9108_14415 PF00990 Diguanylate cyclase, GGDEF domain AP9108_14435 PF02638 Glycosyl hydrolase-like 10 AP9108_14445 PF00375 Sodium:dicarboxylate symporter family AP9108_14450 PF01177 Asp/Glu/Hydantoin racemase AP9108_14500 PF00478 IMP dehydrogenase / GMP reductase domain AP9108_14505 PF00085 Thioredoxin AP9108_14515 PF00486 Transcriptional regulatory protein, C terminal AP9108_14515 PF00072 Response regulator receiver domain AP9108_14520 PF01634 ATP phosphoribosyltransferase AP9108_14540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP9108_14545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP9108_14550 PF02570 Precorrin-8X methylmutase AP9108_14555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AP9108_14555 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AP9108_14560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP9108_14565 PF02571 Precorrin-6x reductase CbiJ/CobK AP9108_14570 PF00202 Aminotransferase class-III AP9108_14575 PF01502 Phosphoribosyl-AMP cyclohydrolase AP9108_14575 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AP9108_14585 PF00486 Transcriptional regulatory protein, C terminal AP9108_14585 PF00072 Response regulator receiver domain AP9108_14600 PF14403 Circularly permuted ATP-grasp type 2 AP9108_14610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AP9108_14610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AP9108_14630 PF00664 ABC transporter transmembrane region AP9108_14630 PF00005 ABC transporter AP9108_14640 PF00012 Hsp70 protein AP9108_14645 PF00149 Calcineurin-like phosphoesterase AP9108_14650 PF00149 Calcineurin-like phosphoesterase AP9108_14660 PF01081 KDPG and KHG aldolase AP9108_14665 PF13409 Glutathione S-transferase, N-terminal domain AP9108_14680 PF00762 Ferrochelatase AP9108_14685 PF02542 YgbB family AP9108_14690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP9108_14695 PF00731 AIR carboxylase AP9108_14710 PF00072 Response regulator receiver domain AP9108_14710 PF13426 PAS domain AP9108_14710 PF08448 PAS fold AP9108_14710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_14710 PF00512 His Kinase A (phospho-acceptor) domain AP9108_14725 PF01348 Type II intron maturase AP9108_14725 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_14855 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_14855 PF01348 Type II intron maturase AP9108_14905 PF00696 Amino acid kinase family AP9108_14905 PF13840 ACT domain AP9108_14905 PF01842 ACT domain AP9108_14910 PF03773 Predicted permease AP9108_14930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP9108_14935 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AP9108_14935 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AP9108_14945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP9108_14945 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_14945 PF00403 Heavy-metal-associated domain AP9108_14950 PF13419 Haloacid dehalogenase-like hydrolase AP9108_14955 PF00072 Response regulator receiver domain AP9108_14955 PF00486 Transcriptional regulatory protein, C terminal AP9108_14960 PF00072 Response regulator receiver domain AP9108_14960 PF01339 CheB methylesterase AP9108_14965 PF00072 Response regulator receiver domain AP9108_14965 PF02895 Signal transducing histidine kinase, homodimeric domain AP9108_14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_14965 PF01627 Hpt domain AP9108_14965 PF01584 CheW-like domain AP9108_14970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP9108_14970 PF00672 HAMP domain AP9108_14970 PF05227 CHASE3 domain AP9108_14975 PF12729 Four helix bundle sensory module for signal transduction AP9108_14975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP9108_14975 PF00672 HAMP domain AP9108_14985 PF01739 CheR methyltransferase, SAM binding domain AP9108_15000 PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N AP9108_15005 PF03699 Uncharacterised protein family (UPF0182) AP9108_15020 PF00005 ABC transporter AP9108_15075 PF03437 BtpA family AP9108_15080 PF07884 Vitamin K epoxide reductase family AP9108_15085 PF03707 Bacterial signalling protein N terminal repeat AP9108_15085 PF00990 Diguanylate cyclase, GGDEF domain AP9108_15085 PF00563 EAL domain AP9108_15090 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AP9108_15105 PF00253 Ribosomal protein S14p/S29e AP9108_15110 PF00633 Helix-hairpin-helix motif AP9108_15110 PF00730 HhH-GPD superfamily base excision DNA repair protein AP9108_15115 PF02163 Peptidase family M50 AP9108_15115 PF13180 PDZ domain AP9108_15125 PF00145 C-5 cytosine-specific DNA methylase AP9108_15130 PF08990 Erythronolide synthase docking AP9108_15130 PF00698 Acyl transferase domain AP9108_15130 PF16197 Ketoacyl-synthetase C-terminal extension AP9108_15130 PF00975 Thioesterase domain AP9108_15130 PF00550 Phosphopantetheine attachment site AP9108_15130 PF02801 Beta-ketoacyl synthase, C-terminal domain AP9108_15130 PF00109 Beta-ketoacyl synthase, N-terminal domain AP9108_15135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AP9108_15140 PF02392 Ycf4 AP9108_15145 PF00124 Photosynthetic reaction centre protein AP9108_15150 PF00421 Photosystem II protein AP9108_15155 PF02503 Polyphosphate kinase middle domain AP9108_15155 PF13090 Polyphosphate kinase C-terminal domain 2 AP9108_15155 PF17941 Polyphosphate kinase C-terminal domain 1 AP9108_15155 PF13089 Polyphosphate kinase N-terminal domain AP9108_15165 PF00012 Hsp70 protein AP9108_15170 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AP9108_15170 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AP9108_15180 PF00176 SNF2 family N-terminal domain AP9108_15180 PF00271 Helicase conserved C-terminal domain AP9108_15195 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AP9108_15230 PF03776 Septum formation topological specificity factor MinE AP9108_15235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AP9108_15240 PF03775 Septum formation inhibitor MinC, C-terminal domain AP9108_15245 PF00890 FAD binding domain AP9108_15245 PF02910 Fumarate reductase flavoprotein C-term AP9108_15260 PF00962 Adenosine/AMP deaminase AP9108_15270 PF00486 Transcriptional regulatory protein, C terminal AP9108_15270 PF00072 Response regulator receiver domain AP9108_15275 PF01348 Type II intron maturase AP9108_15275 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_15320 PF00741 Gas vesicle protein AP9108_15330 PF00741 Gas vesicle protein AP9108_15340 PF00741 Gas vesicle protein AP9108_15350 PF07728 AAA domain (dynein-related subfamily) AP9108_15355 PF00741 Gas vesicle protein AP9108_15360 PF01022 Bacterial regulatory protein, arsR family AP9108_15370 PF12697 Alpha/beta hydrolase family AP9108_15380 PF00535 Glycosyl transferase family 2 AP9108_15400 PF00664 ABC transporter transmembrane region AP9108_15400 PF00005 ABC transporter AP9108_15400 PF03412 Peptidase C39 family AP9108_15415 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AP9108_15420 PF04321 RmlD substrate binding domain AP9108_15425 PF00483 Nucleotidyl transferase AP9108_15455 PF02384 N-6 DNA Methylase AP9108_15455 PF12161 HsdM N-terminal domain AP9108_15460 PF01420 Type I restriction modification DNA specificity domain AP9108_15465 PF04851 Type III restriction enzyme, res subunit AP9108_15465 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AP9108_15465 PF00271 Helicase conserved C-terminal domain AP9108_15465 PF08463 EcoEI R protein C-terminal AP9108_15470 PF13439 Glycosyltransferase Family 4 AP9108_15470 PF00534 Glycosyl transferases group 1 AP9108_15480 PF00155 Aminotransferase class I and II AP9108_15485 PF05151 Photosystem II reaction centre M protein (PsbM) AP9108_15490 PF18030 RimK PreATP-grasp domain AP9108_15490 PF08443 RimK-like ATP-grasp domain AP9108_15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_15525 PF00512 His Kinase A (phospho-acceptor) domain AP9108_15535 PF01476 LysM domain AP9108_15535 PF01551 Peptidase family M23 AP9108_15540 PF13180 PDZ domain AP9108_15560 PF07884 Vitamin K epoxide reductase family AP9108_15565 PF01207 Dihydrouridine synthase (Dus) AP9108_15570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AP9108_15570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AP9108_15625 PF00005 ABC transporter AP9108_15635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP9108_15635 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP9108_15640 PF04011 LemA family AP9108_15650 PF01523 Putative modulator of DNA gyrase AP9108_15675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_15675 PF00512 His Kinase A (phospho-acceptor) domain AP9108_15700 PF01479 S4 domain AP9108_15700 PF01728 FtsJ-like methyltransferase AP9108_15705 PF00145 C-5 cytosine-specific DNA methylase AP9108_15710 PF00502 Phycobilisome protein AP9108_15715 PF00120 Glutamine synthetase, catalytic domain AP9108_15715 PF03951 Glutamine synthetase, beta-Grasp domain AP9108_15720 PF01209 ubiE/COQ5 methyltransferase family AP9108_15805 PF03976 Polyphosphate kinase 2 (PPK2) AP9108_15820 PF00005 ABC transporter AP9108_15820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP9108_15825 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AP9108_15830 PF00579 tRNA synthetases class I (W and Y) AP9108_15830 PF01479 S4 domain AP9108_15835 PF00437 Type II/IV secretion system protein AP9108_15840 PF01467 Cytidylyltransferase-like AP9108_15870 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AP9108_15875 PF10674 Protein of unknown function (DUF2488) AP9108_15895 PF00348 Polyprenyl synthetase AP9108_15900 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AP9108_15900 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AP9108_15910 PF00582 Universal stress protein family AP9108_15915 PF00162 Phosphoglycerate kinase AP9108_15920 PF09308 LuxQ, periplasmic AP9108_15920 PF00512 His Kinase A (phospho-acceptor) domain AP9108_15920 PF00072 Response regulator receiver domain AP9108_15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_15925 PF01926 50S ribosome-binding GTPase AP9108_15940 PF12965 Domain of unknown function (DUF3854) AP9108_15950 PF00535 Glycosyl transferase family 2 AP9108_15955 PF01339 CheB methylesterase AP9108_15955 PF00072 Response regulator receiver domain AP9108_15965 PF01636 Phosphotransferase enzyme family AP9108_16015 PF01507 Phosphoadenosine phosphosulfate reductase family AP9108_16025 PF00565 Staphylococcal nuclease homologue AP9108_16045 PF01207 Dihydrouridine synthase (Dus) AP9108_16060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_16060 PF00512 His Kinase A (phospho-acceptor) domain AP9108_16060 PF09308 LuxQ, periplasmic AP9108_16060 PF00072 Response regulator receiver domain AP9108_16065 PF00005 ABC transporter AP9108_16065 PF12848 ABC transporter AP9108_16065 PF16326 ABC transporter C-terminal domain AP9108_16080 PF13326 Photosystem II Pbs27 AP9108_16090 PF13847 Methyltransferase domain AP9108_16095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP9108_16095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP9108_16095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP9108_16095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP9108_16100 PF00563 EAL domain AP9108_16100 PF00360 Phytochrome region AP9108_16100 PF00990 Diguanylate cyclase, GGDEF domain AP9108_16100 PF01590 GAF domain AP9108_16105 PF09308 LuxQ, periplasmic AP9108_16105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_16105 PF00072 Response regulator receiver domain AP9108_16105 PF00512 His Kinase A (phospho-acceptor) domain AP9108_16160 PF01042 Endoribonuclease L-PSP AP9108_16165 PF01042 Endoribonuclease L-PSP AP9108_16170 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AP9108_16170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AP9108_16180 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system AP9108_16185 PF00781 Diacylglycerol kinase catalytic domain AP9108_16200 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_16200 PF06689 ClpX C4-type zinc finger AP9108_16200 PF07724 AAA domain (Cdc48 subfamily) AP9108_16205 PF00849 RNA pseudouridylate synthase AP9108_16205 PF01479 S4 domain AP9108_16215 PF02687 FtsX-like permease family AP9108_16215 PF12704 MacB-like periplasmic core domain AP9108_16215 PF00005 ABC transporter AP9108_16250 PF07689 KaiB domain AP9108_16250 PF00512 His Kinase A (phospho-acceptor) domain AP9108_16250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_16265 PF01842 ACT domain AP9108_16265 PF00551 Formyl transferase AP9108_16285 PF01348 Type II intron maturase AP9108_16285 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_16315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP9108_16315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AP9108_16360 PF10664 Cyanobacterial and plastid NDH-1 subunit M AP9108_16420 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_16420 PF01348 Type II intron maturase AP9108_16545 PF00805 Pentapeptide repeats (8 copies) AP9108_16545 PF00069 Protein kinase domain AP9108_16555 PF03109 ABC1 family AP9108_16560 PF03734 L,D-transpeptidase catalytic domain AP9108_16560 PF01476 LysM domain AP9108_16570 PF18152 DAHP synthase ferredoxin-like domain AP9108_16570 PF00793 DAHP synthetase I family AP9108_16580 PF00312 Ribosomal protein S15 AP9108_16585 PF00924 Mechanosensitive ion channel AP9108_16625 PF12794 Mechanosensitive ion channel inner membrane domain 1 AP9108_16625 PF12795 Mechanosensitive ion channel porin domain AP9108_16625 PF00924 Mechanosensitive ion channel AP9108_16635 PF01709 Transcriptional regulator AP9108_16660 PF03793 PASTA domain AP9108_16660 PF00069 Protein kinase domain AP9108_16665 PF01625 Peptide methionine sulfoxide reductase AP9108_16670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP9108_16680 PF01145 SPFH domain / Band 7 family AP9108_16690 PF00082 Subtilase family AP9108_16700 PF13416 Bacterial extracellular solute-binding protein AP9108_16705 PF00005 ABC transporter AP9108_16705 PF08402 TOBE domain AP9108_16865 PF01336 OB-fold nucleic acid binding domain AP9108_16865 PF00152 tRNA synthetases class II (D, K and N) AP9108_16900 PF00145 C-5 cytosine-specific DNA methylase AP9108_16910 PF07683 Cobalamin synthesis protein cobW C-terminal domain AP9108_16910 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP9108_16930 PF07664 Ferrous iron transport protein B C terminus AP9108_16930 PF17910 FeoB cytosolic helical domain AP9108_16930 PF02421 Ferrous iron transport protein B AP9108_16930 PF07670 Nucleoside recognition AP9108_16965 PF00487 Fatty acid desaturase AP9108_16975 PF08402 TOBE domain AP9108_16975 PF00005 ABC transporter AP9108_16980 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_16985 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_17015 PF01180 Dihydroorotate dehydrogenase AP9108_17030 PF09827 CRISPR associated protein Cas2 AP9108_17035 PF01867 CRISPR associated protein Cas1 AP9108_17085 PF03793 PASTA domain AP9108_17085 PF00069 Protein kinase domain AP9108_17180 PF03787 RAMP superfamily AP9108_17190 PF03787 RAMP superfamily AP9108_17200 PF18211 Csm1 subunit domain B AP9108_17200 PF01966 HD domain AP9108_17235 PF00427 Phycobilisome Linker polypeptide AP9108_17240 PF01554 MatE AP9108_17245 PF12344 Ultra-violet resistance protein B AP9108_17245 PF17757 UvrB interaction domain AP9108_17245 PF02151 UvrB/uvrC motif AP9108_17245 PF00271 Helicase conserved C-terminal domain AP9108_17245 PF04851 Type III restriction enzyme, res subunit AP9108_17250 PF00850 Histone deacetylase domain AP9108_17255 PF03989 DNA gyrase C-terminal domain, beta-propeller AP9108_17255 PF00521 DNA gyrase/topoisomerase IV, subunit A AP9108_17270 PF02548 Ketopantoate hydroxymethyltransferase AP9108_17275 PF02441 Flavoprotein AP9108_17285 PF01202 Shikimate kinase AP9108_17290 PF00270 DEAD/DEAH box helicase AP9108_17290 PF09382 RQC domain AP9108_17290 PF16124 RecQ zinc-binding AP9108_17290 PF00570 HRDC domain AP9108_17290 PF00271 Helicase conserved C-terminal domain AP9108_17310 PF09587 Bacterial capsule synthesis protein PGA_cap AP9108_17320 PF12323 Helix-turn-helix domain AP9108_17320 PF01385 Probable transposase AP9108_17320 PF07282 Putative transposase DNA-binding domain AP9108_17325 PF01195 Peptidyl-tRNA hydrolase AP9108_17330 PF02416 mttA/Hcf106 family AP9108_17335 PF00737 Photosystem II 10 kDa phosphoprotein AP9108_17340 PF02468 Photosystem II reaction centre N protein (psbN) AP9108_17345 PF01264 Chorismate synthase AP9108_17350 PF12706 Beta-lactamase superfamily domain AP9108_17355 PF00672 HAMP domain AP9108_17355 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP9108_17355 PF00072 Response regulator receiver domain AP9108_17355 PF01627 Hpt domain AP9108_17355 PF00512 His Kinase A (phospho-acceptor) domain AP9108_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_17360 PF02633 Creatinine amidohydrolase AP9108_17370 PF00072 Response regulator receiver domain AP9108_17370 PF00486 Transcriptional regulatory protein, C terminal AP9108_17380 PF00395 S-layer homology domain AP9108_17380 PF04966 Carbohydrate-selective porin, OprB family AP9108_17385 PF00069 Protein kinase domain AP9108_17400 PF01699 Sodium/calcium exchanger protein AP9108_17415 PF17863 AAA lid domain AP9108_17415 PF01078 Magnesium chelatase, subunit ChlI AP9108_17415 PF13519 von Willebrand factor type A domain AP9108_17430 PF00005 ABC transporter AP9108_17430 PF00664 ABC transporter transmembrane region AP9108_17505 PF00226 DnaJ domain AP9108_17505 PF00684 DnaJ central domain AP9108_17505 PF01556 DnaJ C terminal domain AP9108_17510 PF00574 Clp protease AP9108_17515 PF00574 Clp protease AP9108_17520 PF00574 Clp protease AP9108_17525 PF00092 von Willebrand factor type A domain AP9108_17530 PF00625 Guanylate kinase AP9108_17535 PF04025 Domain of unknown function (DUF370) AP9108_17705 PF01348 Type II intron maturase AP9108_17705 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_17885 PF00069 Protein kinase domain AP9108_17885 PF00805 Pentapeptide repeats (8 copies) AP9108_17895 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AP9108_17915 PF00535 Glycosyl transferase family 2 AP9108_17965 PF14437 MafB19-like deaminase AP9108_17970 PF01553 Acyltransferase AP9108_18005 PF00155 Aminotransferase class I and II AP9108_18015 PF04055 Radical SAM superfamily AP9108_18015 PF00919 Uncharacterized protein family UPF0004 AP9108_18015 PF18693 TRAM domain AP9108_18025 PF10150 Ribonuclease E/G family AP9108_18030 PF01351 Ribonuclease HII AP9108_18045 PF01842 ACT domain AP9108_18045 PF01817 Chorismate mutase type II AP9108_18045 PF00800 Prephenate dehydratase AP9108_18050 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_18050 PF05362 Lon protease (S16) C-terminal proteolytic domain AP9108_18050 PF02190 ATP-dependent protease La (LON) substrate-binding domain AP9108_18055 PF00338 Ribosomal protein S10p/S20e AP9108_18060 PF03144 Elongation factor Tu domain 2 AP9108_18060 PF00009 Elongation factor Tu GTP binding domain AP9108_18060 PF03143 Elongation factor Tu C-terminal domain AP9108_18065 PF03144 Elongation factor Tu domain 2 AP9108_18065 PF00009 Elongation factor Tu GTP binding domain AP9108_18065 PF03764 Elongation factor G, domain IV AP9108_18065 PF14492 Elongation Factor G, domain II AP9108_18065 PF00679 Elongation factor G C-terminus AP9108_18070 PF00177 Ribosomal protein S7p/S5e AP9108_18075 PF00164 Ribosomal protein S12/S23 AP9108_18080 PF01521 Iron-sulphur cluster biosynthesis AP9108_18085 PF01050 Mannose-6-phosphate isomerase AP9108_18085 PF00483 Nucleotidyl transferase AP9108_18100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_18100 PF00512 His Kinase A (phospho-acceptor) domain AP9108_18100 PF09308 LuxQ, periplasmic AP9108_18100 PF00072 Response regulator receiver domain AP9108_18110 PF01661 Macro domain AP9108_18140 PF02602 Uroporphyrinogen-III synthase HemD AP9108_18150 PF00672 HAMP domain AP9108_18150 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_18155 PF14495 Cytochrome c-550 domain AP9108_18165 PF01039 Carboxyl transferase domain AP9108_18165 PF17848 Acetyl-coA carboxylase zinc finger domain AP9108_18185 PF06750 Bacterial Peptidase A24 N-terminal domain AP9108_18185 PF01478 Type IV leader peptidase family AP9108_18205 PF00535 Glycosyl transferase family 2 AP9108_18220 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP9108_18220 PF00072 Response regulator receiver domain AP9108_18220 PF01627 Hpt domain AP9108_18220 PF00672 HAMP domain AP9108_18220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_18220 PF00512 His Kinase A (phospho-acceptor) domain AP9108_18230 PF00905 Penicillin binding protein transpeptidase domain AP9108_18230 PF00912 Transglycosylase AP9108_18240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_18240 PF01348 Type II intron maturase AP9108_18260 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_18260 PF01348 Type II intron maturase AP9108_18295 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AP9108_18295 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AP9108_18310 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AP9108_18370 PF00101 Ribulose bisphosphate carboxylase, small chain AP9108_18415 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AP9108_18415 PF03900 Porphobilinogen deaminase, C-terminal domain AP9108_18765 PF00664 ABC transporter transmembrane region AP9108_18765 PF00005 ABC transporter AP9108_18770 PF00400 WD domain, G-beta repeat AP9108_18790 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_18790 PF00483 Nucleotidyl transferase AP9108_18795 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AP9108_18795 PF01266 FAD dependent oxidoreductase AP9108_18810 PF00796 Photosystem I reaction centre subunit VIII AP9108_18815 PF02605 Photosystem I reaction centre subunit XI AP9108_18820 PF00535 Glycosyl transferase family 2 AP9108_18825 PF01730 UreF AP9108_18830 PF05194 UreE urease accessory protein, C-terminal domain AP9108_18830 PF02814 UreE urease accessory protein, N-terminal domain AP9108_18835 PF00762 Ferrochelatase AP9108_18840 PF08241 Methyltransferase domain AP9108_18845 PF01241 Photosystem I psaG / psaK AP9108_18855 PF02463 RecF/RecN/SMC N terminal domain AP9108_18870 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AP9108_18875 PF00498 FHA domain AP9108_18875 PF12773 Double zinc ribbon AP9108_18885 PF03704 Bacterial transcriptional activator domain AP9108_18885 PF00498 FHA domain AP9108_18885 PF00486 Transcriptional regulatory protein, C terminal AP9108_18905 PF03683 Uncharacterised protein family (UPF0175) AP9108_18915 PF00684 DnaJ central domain AP9108_18915 PF01556 DnaJ C terminal domain AP9108_18915 PF00226 DnaJ domain AP9108_19085 PF01348 Type II intron maturase AP9108_19085 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_19090 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_19090 PF01348 Type II intron maturase AP9108_19120 PF01420 Type I restriction modification DNA specificity domain AP9108_19125 PF01420 Type I restriction modification DNA specificity domain AP9108_19130 PF02384 N-6 DNA Methylase AP9108_19130 PF12161 HsdM N-terminal domain AP9108_19150 PF18766 SWI2/SNF2 ATPase AP9108_19150 PF11867 Domain of unknown function (DUF3387) AP9108_19150 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AP9108_19160 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AP9108_19160 PF18766 SWI2/SNF2 ATPase AP9108_19160 PF11867 Domain of unknown function (DUF3387) AP9108_19165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AP9108_19165 PF18766 SWI2/SNF2 ATPase AP9108_19165 PF11867 Domain of unknown function (DUF3387) AP9108_19170 PF18766 SWI2/SNF2 ATPase AP9108_19170 PF11867 Domain of unknown function (DUF3387) AP9108_19170 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AP9108_19240 PF04055 Radical SAM superfamily AP9108_19395 PF01348 Type II intron maturase AP9108_19395 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_19460 PF00583 Acetyltransferase (GNAT) family AP9108_19485 PF12697 Alpha/beta hydrolase family AP9108_19490 PF00583 Acetyltransferase (GNAT) family AP9108_19495 PF00534 Glycosyl transferases group 1 AP9108_19495 PF08323 Starch synthase catalytic domain AP9108_19505 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP9108_19505 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP9108_19505 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP9108_19505 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP9108_19515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP9108_19515 PF00205 Thiamine pyrophosphate enzyme, central domain AP9108_19515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP9108_19520 PF00543 Nitrogen regulatory protein P-II AP9108_19525 PF01725 Ham1 family AP9108_19535 PF00561 alpha/beta hydrolase fold AP9108_19535 PF08386 TAP-like protein AP9108_19540 PF04760 Translation initiation factor IF-2, N-terminal region AP9108_19540 PF08364 Bacterial translation initiation factor IF-2 associated region AP9108_19540 PF00009 Elongation factor Tu GTP binding domain AP9108_19540 PF11987 Translation-initiation factor 2 AP9108_19545 PF03190 Protein of unknown function, DUF255 AP9108_19555 PF00581 Rhodanese-like domain AP9108_19555 PF00899 ThiF family AP9108_19560 PF09308 LuxQ, periplasmic AP9108_19560 PF00072 Response regulator receiver domain AP9108_19560 PF00512 His Kinase A (phospho-acceptor) domain AP9108_19560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_19565 PF01590 GAF domain AP9108_19565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_19565 PF08446 PAS fold AP9108_19565 PF00360 Phytochrome region AP9108_19565 PF00512 His Kinase A (phospho-acceptor) domain AP9108_19570 PF01435 Peptidase family M48 AP9108_19570 PF13181 Tetratricopeptide repeat AP9108_19575 PF00672 HAMP domain AP9108_19575 PF00990 Diguanylate cyclase, GGDEF domain AP9108_19575 PF00563 EAL domain AP9108_19575 PF17154 Gammaproteobacterial periplasmic sensor domain AP9108_19630 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AP9108_19690 PF01850 PIN domain AP9108_19695 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_19705 PF04143 Sulphur transport AP9108_19715 PF01842 ACT domain AP9108_19715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP9108_19715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP9108_19750 PF00805 Pentapeptide repeats (8 copies) AP9108_19750 PF00069 Protein kinase domain AP9108_19780 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AP9108_19800 PF13614 AAA domain AP9108_19805 PF01648 4'-phosphopantetheinyl transferase superfamily AP9108_19820 PF06480 FtsH Extracellular AP9108_19820 PF01434 Peptidase family M41 AP9108_19820 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_19820 PF17862 AAA+ lid domain AP9108_19825 PF05195 Aminopeptidase P, N-terminal domain AP9108_19825 PF00557 Metallopeptidase family M24 AP9108_19840 PF00101 Ribulose bisphosphate carboxylase, small chain AP9108_19845 PF02341 RbcX protein AP9108_19850 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AP9108_19850 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AP9108_19855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP9108_19855 PF03466 LysR substrate binding domain AP9108_19880 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AP9108_19880 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AP9108_19900 PF01556 DnaJ C terminal domain AP9108_19900 PF00684 DnaJ central domain AP9108_19900 PF00226 DnaJ domain AP9108_19925 PF00124 Photosynthetic reaction centre protein AP9108_19945 PF05685 Putative restriction endonuclease AP9108_19950 PF00124 Photosynthetic reaction centre protein AP9108_19955 PF04055 Radical SAM superfamily AP9108_19970 PF00400 WD domain, G-beta repeat AP9108_19970 PF05729 NACHT domain AP9108_19970 PF00805 Pentapeptide repeats (8 copies) AP9108_19975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AP9108_19985 PF00436 Single-strand binding protein family AP9108_19995 PF00072 Response regulator receiver domain AP9108_19995 PF00158 Sigma-54 interaction domain AP9108_19995 PF02954 Bacterial regulatory protein, Fis family AP9108_20000 PF01209 ubiE/COQ5 methyltransferase family AP9108_20005 PF04286 Protein of unknown function (DUF445) AP9108_20010 PF07670 Nucleoside recognition AP9108_20010 PF07662 Na+ dependent nucleoside transporter C-terminus AP9108_20010 PF01773 Na+ dependent nucleoside transporter N-terminus AP9108_20015 PF01926 50S ribosome-binding GTPase AP9108_20015 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AP9108_20020 PF02361 Cobalt transport protein AP9108_20035 PF04472 Cell division protein SepF AP9108_20040 PF14748 Pyrroline-5-carboxylate reductase dimerisation AP9108_20040 PF03807 NADP oxidoreductase coenzyme F420-dependent AP9108_20045 PF02660 Glycerol-3-phosphate acyltransferase AP9108_20130 PF02779 Transketolase, pyrimidine binding domain AP9108_20130 PF02780 Transketolase, C-terminal domain AP9108_20130 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AP9108_20135 PF00535 Glycosyl transferase family 2 AP9108_20145 PF01467 Cytidylyltransferase-like AP9108_20145 PF00294 pfkB family carbohydrate kinase AP9108_20165 PF00092 von Willebrand factor type A domain AP9108_20180 PF01467 Cytidylyltransferase-like AP9108_20180 PF00294 pfkB family carbohydrate kinase AP9108_20190 PF05419 GUN4-like AP9108_20190 PF16416 ARM-like repeat domain, GUN4-N terminal AP9108_20220 PF00263 Bacterial type II and III secretion system protein AP9108_20220 PF03958 Bacterial type II/III secretion system short domain AP9108_20225 PF00216 Bacterial DNA-binding protein AP9108_20230 PF00155 Aminotransferase class I and II AP9108_20240 PF01541 GIY-YIG catalytic domain AP9108_20240 PF02151 UvrB/uvrC motif AP9108_20240 PF08459 UvrC Helix-hairpin-helix N-terminal AP9108_20240 PF12826 Helix-hairpin-helix motif AP9108_20245 PF00067 Cytochrome P450 AP9108_20260 PF03033 Glycosyltransferase family 28 N-terminal domain AP9108_20260 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AP9108_20275 PF00348 Polyprenyl synthetase AP9108_20295 PF01266 FAD dependent oxidoreductase AP9108_20320 PF01435 Peptidase family M48 AP9108_20325 PF04011 LemA family AP9108_20330 PF00155 Aminotransferase class I and II AP9108_20350 PF18073 Rubredoxin metal binding domain AP9108_20350 PF06745 KaiC AP9108_20355 PF00072 Response regulator receiver domain AP9108_20355 PF00486 Transcriptional regulatory protein, C terminal AP9108_20385 PF01769 Divalent cation transporter AP9108_20385 PF00571 CBS domain AP9108_20385 PF03448 MgtE intracellular N domain AP9108_20390 PF01926 50S ribosome-binding GTPase AP9108_20390 PF01018 GTP1/OBG AP9108_20425 PF14572 Phosphoribosyl synthetase-associated domain AP9108_20425 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AP9108_20430 PF00069 Protein kinase domain AP9108_20450 PF00145 C-5 cytosine-specific DNA methylase AP9108_20460 PF00873 AcrB/AcrD/AcrF family AP9108_20480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AP9108_20480 PF17944 Arginine decarboxylase C-terminal helical extension AP9108_20480 PF17810 Arginine decarboxylase helical bundle domain AP9108_20485 PF00483 Nucleotidyl transferase AP9108_20490 PF02446 4-alpha-glucanotransferase AP9108_20500 PF02446 4-alpha-glucanotransferase AP9108_20520 PF03808 Glycosyl transferase WecB/TagA/CpsF family AP9108_20530 PF03079 ARD/ARD' family AP9108_20545 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_20550 PF00072 Response regulator receiver domain AP9108_20550 PF00486 Transcriptional regulatory protein, C terminal AP9108_20555 PF00072 Response regulator receiver domain AP9108_20555 PF00196 Bacterial regulatory proteins, luxR family AP9108_20560 PF00072 Response regulator receiver domain AP9108_20560 PF00990 Diguanylate cyclase, GGDEF domain AP9108_20565 PF02938 GAD domain AP9108_20565 PF01336 OB-fold nucleic acid binding domain AP9108_20565 PF00152 tRNA synthetases class II (D, K and N) AP9108_20585 PF01850 PIN domain AP9108_20600 PF00117 Glutamine amidotransferase class-I AP9108_20600 PF02540 NAD synthase AP9108_20600 PF00958 GMP synthase C terminal domain AP9108_20625 PF00266 Aminotransferase class-V AP9108_20650 PF02384 N-6 DNA Methylase AP9108_20700 PF00266 Aminotransferase class-V AP9108_20710 PF06508 Queuosine biosynthesis protein QueC AP9108_20715 PF00902 Sec-independent protein translocase protein (TatC) AP9108_20735 PF01434 Peptidase family M41 AP9108_20735 PF06480 FtsH Extracellular AP9108_20735 PF17862 AAA+ lid domain AP9108_20735 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_20745 PF00535 Glycosyl transferase family 2 AP9108_20755 PF17728 BsuBI/PstI restriction endonuclease HTH domain AP9108_20755 PF06616 BsuBI/PstI restriction endonuclease domain AP9108_20760 PF00145 C-5 cytosine-specific DNA methylase AP9108_20765 PF02350 UDP-N-acetylglucosamine 2-epimerase AP9108_20770 PF00563 EAL domain AP9108_20770 PF01590 GAF domain AP9108_20770 PF00360 Phytochrome region AP9108_20770 PF00990 Diguanylate cyclase, GGDEF domain AP9108_20775 PF00849 RNA pseudouridylate synthase AP9108_20785 PF02875 Mur ligase family, glutamate ligase domain AP9108_20785 PF08245 Mur ligase middle domain AP9108_20795 PF00936 BMC domain AP9108_20810 PF03319 Ethanolamine utilisation protein EutN/carboxysome AP9108_20815 PF00936 BMC domain AP9108_20820 PF00936 BMC domain AP9108_20825 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AP9108_20825 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AP9108_20825 PF00361 Proton-conducting membrane transporter AP9108_20830 PF00361 Proton-conducting membrane transporter AP9108_20840 PF00005 ABC transporter AP9108_20840 PF00664 ABC transporter transmembrane region AP9108_20860 PF02675 S-adenosylmethionine decarboxylase AP9108_20865 PF02086 D12 class N6 adenine-specific DNA methyltransferase AP9108_20880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_20880 PF01348 Type II intron maturase AP9108_20885 PF08402 TOBE domain AP9108_20885 PF00005 ABC transporter AP9108_20890 PF13416 Bacterial extracellular solute-binding protein AP9108_20895 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_20900 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_20905 PF01687 Riboflavin kinase AP9108_20905 PF06574 FAD synthetase AP9108_20920 PF07726 ATPase family associated with various cellular activities (AAA) AP9108_20920 PF17863 AAA lid domain AP9108_20935 PF03186 CobD/Cbib protein AP9108_20940 PF00156 Phosphoribosyl transferase domain AP9108_20945 PF01070 FMN-dependent dehydrogenase AP9108_20950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP9108_20960 PF10017 Histidine-specific methyltransferase, SAM-dependent AP9108_20965 PF00830 Ribosomal L28 family AP9108_20970 PF01131 DNA topoisomerase AP9108_20970 PF01751 Toprim domain AP9108_20970 PF13368 Topoisomerase C-terminal repeat AP9108_20980 PF05193 Peptidase M16 inactive domain AP9108_20980 PF00675 Insulinase (Peptidase family M16) AP9108_20985 PF03649 Uncharacterised protein family (UPF0014) AP9108_20990 PF09383 NIL domain AP9108_20990 PF00005 ABC transporter AP9108_20995 PF00563 EAL domain AP9108_20995 PF00990 Diguanylate cyclase, GGDEF domain AP9108_20995 PF03707 Bacterial signalling protein N terminal repeat AP9108_21015 PF01751 Toprim domain AP9108_21015 PF00204 DNA gyrase B AP9108_21015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_21015 PF00986 DNA gyrase B subunit, carboxyl terminus AP9108_21025 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_21025 PF06689 ClpX C4-type zinc finger AP9108_21025 PF07724 AAA domain (Cdc48 subfamily) AP9108_21030 PF00574 Clp protease AP9108_21035 PF05697 Bacterial trigger factor protein (TF) AP9108_21035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP9108_21035 PF05698 Bacterial trigger factor protein (TF) C-terminus AP9108_21040 PF02774 Semialdehyde dehydrogenase, dimerisation domain AP9108_21040 PF01118 Semialdehyde dehydrogenase, NAD binding domain AP9108_21045 PF00701 Dihydrodipicolinate synthetase family AP9108_21050 PF00753 Metallo-beta-lactamase superfamily AP9108_21050 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AP9108_21050 PF17770 Ribonuclease J C-terminal domain AP9108_21055 PF00158 Sigma-54 interaction domain AP9108_21055 PF00989 PAS fold AP9108_21055 PF02954 Bacterial regulatory protein, Fis family AP9108_21065 PF13378 Enolase C-terminal domain-like AP9108_21075 PF13614 AAA domain AP9108_21080 PF00561 alpha/beta hydrolase fold AP9108_21090 PF08448 PAS fold AP9108_21090 PF08447 PAS fold AP9108_21090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_21095 PF03707 Bacterial signalling protein N terminal repeat AP9108_21095 PF00990 Diguanylate cyclase, GGDEF domain AP9108_21095 PF13188 PAS domain AP9108_21095 PF00563 EAL domain AP9108_21100 PF01769 Divalent cation transporter AP9108_21100 PF00571 CBS domain AP9108_21100 PF03448 MgtE intracellular N domain AP9108_21115 PF01348 Type II intron maturase AP9108_21115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_21135 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_21135 PF01348 Type II intron maturase AP9108_21160 PF00013 KH domain AP9108_21160 PF03725 3' exoribonuclease family, domain 2 AP9108_21160 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AP9108_21160 PF01138 3' exoribonuclease family, domain 1 AP9108_21160 PF00575 S1 RNA binding domain AP9108_21165 PF00176 SNF2 family N-terminal domain AP9108_21165 PF00271 Helicase conserved C-terminal domain AP9108_21165 PF12419 SNF2 Helicase protein AP9108_21185 PF01348 Type II intron maturase AP9108_21185 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_21200 PF00502 Phycobilisome protein AP9108_21205 PF01938 TRAM domain AP9108_21205 PF13847 Methyltransferase domain AP9108_21215 PF05690 Thiazole biosynthesis protein ThiG AP9108_21215 PF01266 FAD dependent oxidoreductase AP9108_21375 PF07670 Nucleoside recognition AP9108_21375 PF02421 Ferrous iron transport protein B AP9108_21375 PF07664 Ferrous iron transport protein B C terminus AP9108_21375 PF17910 FeoB cytosolic helical domain AP9108_21380 PF07670 Nucleoside recognition AP9108_21380 PF07664 Ferrous iron transport protein B C terminus AP9108_21380 PF02421 Ferrous iron transport protein B AP9108_21395 PF03461 TRCF domain AP9108_21395 PF00271 Helicase conserved C-terminal domain AP9108_21395 PF00270 DEAD/DEAH box helicase AP9108_21395 PF02559 CarD-like/TRCF domain AP9108_21395 PF17757 UvrB interaction domain AP9108_21400 PF00005 ABC transporter AP9108_21405 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase AP9108_21405 PF00749 tRNA synthetases class I (E and Q), catalytic domain AP9108_21415 PF00069 Protein kinase domain AP9108_21415 PF00805 Pentapeptide repeats (8 copies) AP9108_21420 PF08240 Alcohol dehydrogenase GroES-like domain AP9108_21420 PF00107 Zinc-binding dehydrogenase AP9108_21425 PF00465 Iron-containing alcohol dehydrogenase AP9108_21425 PF00171 Aldehyde dehydrogenase family AP9108_21430 PF00400 WD domain, G-beta repeat AP9108_21430 PF00931 NB-ARC domain AP9108_21435 PF00326 Prolyl oligopeptidase family AP9108_21445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP9108_21445 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_21470 PF00690 Cation transporter/ATPase, N-terminus AP9108_21470 PF00689 Cation transporting ATPase, C-terminus AP9108_21475 PF00581 Rhodanese-like domain AP9108_21485 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AP9108_21505 PF17284 Spermidine synthase tetramerisation domain AP9108_21520 PF02618 YceG-like family AP9108_21525 PF06949 Protein of unknown function (DUF1292) AP9108_21530 PF03652 Holliday junction resolvase AP9108_21575 PF00829 Ribosomal prokaryotic L21 protein AP9108_21585 PF01016 Ribosomal L27 protein AP9108_21605 PF06745 KaiC AP9108_21610 PF07689 KaiB domain AP9108_21615 PF07688 KaiA C-terminal domain AP9108_21635 PF00563 EAL domain AP9108_21635 PF01590 GAF domain AP9108_21635 PF00360 Phytochrome region AP9108_21635 PF00990 Diguanylate cyclase, GGDEF domain AP9108_21640 PF00148 Nitrogenase component 1 type Oxidoreductase AP9108_21640 PF08369 Proto-chlorophyllide reductase 57 kD subunit AP9108_21665 PF05670 NFACT protein RNA binding domain AP9108_21670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AP9108_21690 PF01451 Low molecular weight phosphotyrosine protein phosphatase AP9108_21695 PF03358 NADPH-dependent FMN reductase AP9108_21700 PF01758 Sodium Bile acid symporter family AP9108_21810 PF00145 C-5 cytosine-specific DNA methylase AP9108_21855 PF00480 ROK family AP9108_21910 PF00355 Rieske [2Fe-2S] domain AP9108_21915 PF16639 Apocytochrome F, N-terminal AP9108_21915 PF01333 Apocytochrome F, C-terminal AP9108_21925 PF18087 Rubisco Assembly chaperone C-terminal domain AP9108_21925 PF18579 Rubisco accumulation factor 1 helix turn helix domain AP9108_21925 PF18578 Rubisco accumulation factor 1 alpha helical domain AP9108_21990 PF00171 Aldehyde dehydrogenase family AP9108_22000 PF06838 Methionine gamma-lyase AP9108_22020 PF00072 Response regulator receiver domain AP9108_22040 PF02374 Anion-transporting ATPase AP9108_22040 PF17886 HSP20-like domain found in ArsA AP9108_22135 PF01138 3' exoribonuclease family, domain 1 AP9108_22135 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AP9108_22135 PF03725 3' exoribonuclease family, domain 2 AP9108_22135 PF00575 S1 RNA binding domain AP9108_22135 PF00013 KH domain AP9108_22160 PF00578 AhpC/TSA family AP9108_22165 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AP9108_22180 PF00580 UvrD/REP helicase N-terminal domain AP9108_22180 PF13361 UvrD-like helicase C-terminal domain AP9108_22190 PF01464 Transglycosylase SLT domain AP9108_22190 PF14718 Soluble lytic murein transglycosylase L domain AP9108_22205 PF01116 Fructose-bisphosphate aldolase class-II AP9108_22215 PF01263 Aldose 1-epimerase AP9108_22220 PF09587 Bacterial capsule synthesis protein PGA_cap AP9108_22230 PF12706 Beta-lactamase superfamily domain AP9108_22230 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AP9108_22235 PF13640 2OG-Fe(II) oxygenase superfamily AP9108_22240 PF13640 2OG-Fe(II) oxygenase superfamily AP9108_22285 PF00999 Sodium/hydrogen exchanger family AP9108_22290 PF00977 Histidine biosynthesis protein AP9108_22295 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AP9108_22335 PF08447 PAS fold AP9108_22335 PF08448 PAS fold AP9108_22335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_22340 PF02069 Prokaryotic metallothionein AP9108_22345 PF01022 Bacterial regulatory protein, arsR family AP9108_22350 PF00175 Oxidoreductase NAD-binding domain AP9108_22355 PF02529 Cytochrome B6-F complex subunit 5 AP9108_22390 PF00069 Protein kinase domain AP9108_22390 PF00805 Pentapeptide repeats (8 copies) AP9108_22395 PF00069 Protein kinase domain AP9108_22395 PF00805 Pentapeptide repeats (8 copies) AP9108_22400 PF00069 Protein kinase domain AP9108_22400 PF00805 Pentapeptide repeats (8 copies) AP9108_22405 PF00805 Pentapeptide repeats (8 copies) AP9108_22405 PF00069 Protein kinase domain AP9108_22420 PF03441 FAD binding domain of DNA photolyase AP9108_22420 PF00875 DNA photolyase AP9108_22430 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AP9108_22440 PF04055 Radical SAM superfamily AP9108_22445 PF00912 Transglycosylase AP9108_22445 PF00905 Penicillin binding protein transpeptidase domain AP9108_22445 PF17092 Penicillin-binding protein OB-like domain AP9108_22460 PF13614 AAA domain AP9108_22470 PF01835 MG2 domain AP9108_22470 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AP9108_22470 PF07703 Alpha-2-macroglobulin bait region domain AP9108_22470 PF00207 Alpha-2-macroglobulin family AP9108_22475 PF02685 Glucokinase AP9108_22480 PF09363 XFP C-terminal domain AP9108_22480 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AP9108_22480 PF09364 XFP N-terminal domain AP9108_22485 PF00871 Acetokinase family AP9108_22490 PF00676 Dehydrogenase E1 component AP9108_22495 PF00226 DnaJ domain AP9108_22495 PF01556 DnaJ C terminal domain AP9108_22495 PF00684 DnaJ central domain AP9108_22520 PF02540 NAD synthase AP9108_22585 PF00990 Diguanylate cyclase, GGDEF domain AP9108_22640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AP9108_22645 PF04055 Radical SAM superfamily AP9108_22645 PF18693 TRAM domain AP9108_22645 PF00919 Uncharacterized protein family UPF0004 AP9108_22650 PF00924 Mechanosensitive ion channel AP9108_22800 PF00005 ABC transporter AP9108_22825 PF00989 PAS fold AP9108_22825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_22825 PF00512 His Kinase A (phospho-acceptor) domain AP9108_22830 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AP9108_22835 PF12706 Beta-lactamase superfamily domain AP9108_22840 PF01593 Flavin containing amine oxidoreductase AP9108_22855 PF06480 FtsH Extracellular AP9108_22855 PF17862 AAA+ lid domain AP9108_22855 PF01434 Peptidase family M41 AP9108_22855 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_22890 PF00092 von Willebrand factor type A domain AP9108_22925 PF00374 Nickel-dependent hydrogenase AP9108_22930 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AP9108_22935 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AP9108_22935 PF13237 4Fe-4S dicluster domain AP9108_22935 PF01568 Molydopterin dinucleotide binding domain AP9108_22935 PF00384 Molybdopterin oxidoreductase AP9108_22935 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AP9108_22940 PF03063 Prismane/CO dehydrogenase family AP9108_22945 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AP9108_22945 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AP9108_22945 PF00037 4Fe-4S binding domain AP9108_22950 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AP9108_22950 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AP9108_22955 PF01455 HupF/HypC family AP9108_22960 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AP9108_22960 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AP9108_22960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP9108_22960 PF10371 Domain of unknown function AP9108_22960 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AP9108_22965 PF01180 Dihydroorotate dehydrogenase AP9108_22975 PF03109 ABC1 family AP9108_22980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AP9108_22985 PF03649 Uncharacterised protein family (UPF0014) AP9108_23005 PF01165 Ribosomal protein S21 AP9108_23010 PF00672 HAMP domain AP9108_23010 PF00512 His Kinase A (phospho-acceptor) domain AP9108_23010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_23040 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_23040 PF01348 Type II intron maturase AP9108_23050 PF01348 Type II intron maturase AP9108_23050 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_23060 PF16363 GDP-mannose 4,6 dehydratase AP9108_23075 PF01348 Type II intron maturase AP9108_23075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_23085 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_23085 PF02861 Clp amino terminal domain, pathogenicity island component AP9108_23085 PF17871 AAA lid domain AP9108_23085 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_23085 PF07724 AAA domain (Cdc48 subfamily) AP9108_23090 PF17149 Periplasmic sensor domain found in signal transduction proteins AP9108_23090 PF01627 Hpt domain AP9108_23090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_23090 PF00672 HAMP domain AP9108_23090 PF00072 Response regulator receiver domain AP9108_23090 PF00512 His Kinase A (phospho-acceptor) domain AP9108_23115 PF02686 Glu-tRNAGln amidotransferase C subunit AP9108_23125 PF01348 Type II intron maturase AP9108_23125 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_23155 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP9108_23155 PF01627 Hpt domain AP9108_23155 PF00512 His Kinase A (phospho-acceptor) domain AP9108_23155 PF00989 PAS fold AP9108_23155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_23155 PF00072 Response regulator receiver domain AP9108_23170 PF00072 Response regulator receiver domain AP9108_23175 PF13180 PDZ domain AP9108_23180 PF02684 Lipid-A-disaccharide synthetase AP9108_23185 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AP9108_23185 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_23190 PF07977 FabA-like domain AP9108_23195 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AP9108_23225 PF00188 Cysteine-rich secretory protein family AP9108_23385 PF00534 Glycosyl transferases group 1 AP9108_23385 PF08323 Starch synthase catalytic domain AP9108_23460 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_23460 PF01348 Type II intron maturase AP9108_23485 PF16745 RsgA N-terminal domain AP9108_23485 PF03193 RsgA GTPase AP9108_23500 PF13932 GidA associated domain AP9108_23500 PF01134 Glucose inhibited division protein A AP9108_23560 PF01593 Flavin containing amine oxidoreductase AP9108_23570 PF09278 MerR, DNA binding AP9108_23570 PF00376 MerR family regulatory protein AP9108_23665 PF01841 Transglutaminase-like superfamily AP9108_23675 PF08479 POTRA domain, ShlB-type AP9108_23675 PF17287 POTRA domain AP9108_23675 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AP9108_23680 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AP9108_23690 PF00148 Nitrogenase component 1 type Oxidoreductase AP9108_23705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_23705 PF00072 Response regulator receiver domain AP9108_23705 PF00512 His Kinase A (phospho-acceptor) domain AP9108_23705 PF09308 LuxQ, periplasmic AP9108_23710 PF00579 tRNA synthetases class I (W and Y) AP9108_23745 PF00512 His Kinase A (phospho-acceptor) domain AP9108_23745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_23745 PF01627 Hpt domain AP9108_23745 PF00672 HAMP domain AP9108_23745 PF00072 Response regulator receiver domain AP9108_23745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP9108_23750 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_23765 PF16363 GDP-mannose 4,6 dehydratase AP9108_23770 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_23775 PF05685 Putative restriction endonuclease AP9108_23780 PF05685 Putative restriction endonuclease AP9108_23810 PF01850 PIN domain AP9108_23820 PF06827 Zinc finger found in FPG and IleRS AP9108_23820 PF00133 tRNA synthetases class I (I, L, M and V) AP9108_23820 PF08264 Anticodon-binding domain of tRNA AP9108_23825 PF05969 Photosystem II complex subunit Ycf12 AP9108_23830 PF14251 Domain of unknown function (DUF4346) AP9108_23835 PF03477 ATP cone domain AP9108_23835 PF00317 Ribonucleotide reductase, all-alpha domain AP9108_23835 PF02867 Ribonucleotide reductase, barrel domain AP9108_23840 PF00268 Ribonucleotide reductase, small chain AP9108_23855 PF00557 Metallopeptidase family M24 AP9108_23860 PF00072 Response regulator receiver domain AP9108_23860 PF00486 Transcriptional regulatory protein, C terminal AP9108_23875 PF03471 Transporter associated domain AP9108_23875 PF00999 Sodium/hydrogen exchanger family AP9108_23880 PF01183 Glycosyl hydrolases family 25 AP9108_23885 PF01209 ubiE/COQ5 methyltransferase family AP9108_23890 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP9108_23895 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_23895 PF12911 N-terminal TM domain of oligopeptide transport permease C AP9108_23900 PF04542 Sigma-70 region 2 AP9108_23900 PF04545 Sigma-70, region 4 AP9108_23900 PF04539 Sigma-70 region 3 AP9108_23900 PF00140 Sigma-70 factor, region 1.2 AP9108_23905 PF00171 Aldehyde dehydrogenase family AP9108_23910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP9108_23910 PF00205 Thiamine pyrophosphate enzyme, central domain AP9108_23910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP9108_23920 PF01557 Fumarylacetoacetate (FAA) hydrolase family AP9108_23925 PF01888 CbiD AP9108_23950 PF02308 MgtC family AP9108_23955 PF16657 Maltogenic Amylase, C-terminal domain AP9108_23955 PF00128 Alpha amylase, catalytic domain AP9108_23960 PF01979 Amidohydrolase family AP9108_23970 PF00171 Aldehyde dehydrogenase family AP9108_23990 PF00072 Response regulator receiver domain AP9108_23990 PF00486 Transcriptional regulatory protein, C terminal AP9108_23995 PF16166 Chloroplast import apparatus Tic20-like AP9108_24015 PF00953 Glycosyl transferase family 4 AP9108_24020 PF00994 Probable molybdopterin binding domain AP9108_24020 PF18146 Damage-inducible protein CinA KH domain AP9108_24020 PF02464 Competence-damaged protein AP9108_24030 PF01220 Dehydroquinase class II AP9108_24065 PF07697 7TM-HD extracellular AP9108_24065 PF07698 7TM receptor with intracellular HD hydrolase AP9108_24065 PF01966 HD domain AP9108_24075 PF08264 Anticodon-binding domain of tRNA AP9108_24075 PF00133 tRNA synthetases class I (I, L, M and V) AP9108_24075 PF13603 Leucyl-tRNA synthetase, Domain 2 AP9108_24075 PF09334 tRNA synthetases class I (M) AP9108_24100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AP9108_24100 PF01411 tRNA synthetases class II (A) AP9108_24100 PF02272 DHHA1 domain AP9108_24115 PF00849 RNA pseudouridylate synthase AP9108_24120 PF09620 CRISPR-associated protein (Cas_csx3) AP9108_24135 PF12705 PD-(D/E)XK nuclease superfamily AP9108_24135 PF00580 UvrD/REP helicase N-terminal domain AP9108_24135 PF13361 UvrD-like helicase C-terminal domain AP9108_24145 PF01170 Putative RNA methylase family UPF0020 AP9108_24145 PF02926 THUMP domain AP9108_24150 PF12697 Alpha/beta hydrolase family AP9108_24160 PF00271 Helicase conserved C-terminal domain AP9108_24160 PF00176 SNF2 family N-terminal domain AP9108_24195 PF00850 Histone deacetylase domain AP9108_24210 PF04107 Glutamate-cysteine ligase family 2(GCS2) AP9108_24215 PF00588 SpoU rRNA Methylase family AP9108_24220 PF01476 LysM domain AP9108_24220 PF01551 Peptidase family M23 AP9108_24390 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_24390 PF01348 Type II intron maturase AP9108_24395 PF00578 AhpC/TSA family AP9108_24395 PF10417 C-terminal domain of 1-Cys peroxiredoxin AP9108_24415 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_24415 PF01348 Type II intron maturase AP9108_24420 PF00561 alpha/beta hydrolase fold AP9108_24420 PF08386 TAP-like protein AP9108_24425 PF05198 Translation initiation factor IF-3, N-terminal domain AP9108_24425 PF00707 Translation initiation factor IF-3, C-terminal domain AP9108_24440 PF16658 Class II release factor RF3, C-terminal domain AP9108_24440 PF00009 Elongation factor Tu GTP binding domain AP9108_24445 PF00005 ABC transporter AP9108_24445 PF17912 MalK OB fold domain AP9108_24460 PF03989 DNA gyrase C-terminal domain, beta-propeller AP9108_24460 PF00521 DNA gyrase/topoisomerase IV, subunit A AP9108_24465 PF00512 His Kinase A (phospho-acceptor) domain AP9108_24465 PF01627 Hpt domain AP9108_24465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_24465 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP9108_24465 PF00672 HAMP domain AP9108_24465 PF00072 Response regulator receiver domain AP9108_24475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_24490 PF06418 CTP synthase N-terminus AP9108_24490 PF00117 Glutamine amidotransferase class-I AP9108_24495 PF01266 FAD dependent oxidoreductase AP9108_24515 PF12697 Alpha/beta hydrolase family AP9108_24520 PF04471 Restriction endonuclease AP9108_24520 PF14338 Mrr N-terminal domain AP9108_24525 PF01555 DNA methylase AP9108_24530 PF12706 Beta-lactamase superfamily domain AP9108_24555 PF00557 Metallopeptidase family M24 AP9108_24560 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_24560 PF01348 Type II intron maturase AP9108_24680 PF08448 PAS fold AP9108_24680 PF08447 PAS fold AP9108_24680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_24780 PF13426 PAS domain AP9108_24780 PF07536 HWE histidine kinase AP9108_24780 PF08447 PAS fold AP9108_24860 PF02427 Photosystem I reaction centre subunit IV / PsaE AP9108_24865 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AP9108_24865 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AP9108_24865 PF06827 Zinc finger found in FPG and IleRS AP9108_24870 PF11910 Cyanobacterial and plant NDH-1 subunit O AP9108_24875 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AP9108_24875 PF00056 lactate/malate dehydrogenase, NAD binding domain AP9108_24890 PF00805 Pentapeptide repeats (8 copies) AP9108_24890 PF00069 Protein kinase domain AP9108_24970 PF04055 Radical SAM superfamily AP9108_24980 PF01430 Hsp33 protein AP9108_24995 PF00005 ABC transporter AP9108_24995 PF02687 FtsX-like permease family AP9108_24995 PF12704 MacB-like periplasmic core domain AP9108_25015 PF01850 PIN domain AP9108_25025 PF00924 Mechanosensitive ion channel AP9108_25025 PF12795 Mechanosensitive ion channel porin domain AP9108_25025 PF12794 Mechanosensitive ion channel inner membrane domain 1 AP9108_25030 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_25035 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_25050 PF00005 ABC transporter AP9108_25050 PF03459 TOBE domain AP9108_25060 PF13545 Crp-like helix-turn-helix domain AP9108_25065 PF00291 Pyridoxal-phosphate dependent enzyme AP9108_25070 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_25080 PF00266 Aminotransferase class-V AP9108_25085 PF00753 Metallo-beta-lactamase superfamily AP9108_25090 PF00583 Acetyltransferase (GNAT) family AP9108_25090 PF13380 CoA binding domain AP9108_25090 PF13607 Succinyl-CoA ligase like flavodoxin domain AP9108_25095 PF00762 Ferrochelatase AP9108_25100 PF01384 Phosphate transporter family AP9108_25105 PF00395 S-layer homology domain AP9108_25105 PF00963 Cohesin domain AP9108_25110 PF08241 Methyltransferase domain AP9108_25120 PF00343 Carbohydrate phosphorylase AP9108_25130 PF00149 Calcineurin-like phosphoesterase AP9108_25150 PF01734 Patatin-like phospholipase AP9108_25240 PF00069 Protein kinase domain AP9108_25250 PF00069 Protein kinase domain AP9108_25265 PF00563 EAL domain AP9108_25265 PF03707 Bacterial signalling protein N terminal repeat AP9108_25265 PF00990 Diguanylate cyclase, GGDEF domain AP9108_25270 PF00005 ABC transporter AP9108_25275 PF02361 Cobalt transport protein AP9108_25280 PF02553 Cobalt transport protein component CbiN AP9108_25290 PF00535 Glycosyl transferase family 2 AP9108_25295 PF00764 Arginosuccinate synthase AP9108_25305 PF01488 Shikimate / quinate 5-dehydrogenase AP9108_25310 PF11266 Long-chain fatty aldehyde decarbonylase AP9108_25315 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_25325 PF13439 Glycosyltransferase Family 4 AP9108_25325 PF00534 Glycosyl transferases group 1 AP9108_25330 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_25335 PF00465 Iron-containing alcohol dehydrogenase AP9108_25335 PF00171 Aldehyde dehydrogenase family AP9108_25340 PF00361 Proton-conducting membrane transporter AP9108_25345 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AP9108_25350 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AP9108_25350 PF00361 Proton-conducting membrane transporter AP9108_25380 PF03109 ABC1 family AP9108_25405 PF00982 Glycosyltransferase family 20 AP9108_25410 PF01266 FAD dependent oxidoreductase AP9108_25410 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AP9108_25415 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AP9108_25415 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AP9108_25420 PF08448 PAS fold AP9108_25420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_25420 PF08447 PAS fold AP9108_25425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP9108_25425 PF00072 Response regulator receiver domain AP9108_25425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_25425 PF00512 His Kinase A (phospho-acceptor) domain AP9108_25425 PF01627 Hpt domain AP9108_25425 PF00672 HAMP domain AP9108_25435 PF00072 Response regulator receiver domain AP9108_25435 PF00990 Diguanylate cyclase, GGDEF domain AP9108_25450 PF00672 HAMP domain AP9108_25450 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_25470 PF08443 RimK-like ATP-grasp domain AP9108_25470 PF18030 RimK PreATP-grasp domain AP9108_25495 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_25505 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_25515 PF00224 Pyruvate kinase, barrel domain AP9108_25515 PF02887 Pyruvate kinase, alpha/beta domain AP9108_25520 PF14528 LAGLIDADG-like domain AP9108_25520 PF00772 DnaB-like helicase N terminal domain AP9108_25520 PF03796 DnaB-like helicase C terminal domain AP9108_25525 PF03948 Ribosomal protein L9, C-terminal domain AP9108_25525 PF01281 Ribosomal protein L9, N-terminal domain AP9108_25530 PF00005 ABC transporter AP9108_25545 PF00005 ABC transporter AP9108_25545 PF13732 Domain of unknown function (DUF4162) AP9108_25550 PF01467 Cytidylyltransferase-like AP9108_25565 PF00032 Cytochrome b(C-terminal)/b6/petD AP9108_25570 PF00033 Cytochrome b/b6/petB AP9108_25590 PF08240 Alcohol dehydrogenase GroES-like domain AP9108_25590 PF00107 Zinc-binding dehydrogenase AP9108_25595 PF00145 C-5 cytosine-specific DNA methylase AP9108_25600 PF00860 Permease family AP9108_25610 PF01594 AI-2E family transporter AP9108_25615 PF00892 EamA-like transporter family AP9108_25620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP9108_25620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP9108_25620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP9108_25620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP9108_25625 PF01227 GTP cyclohydrolase I AP9108_25630 PF00106 short chain dehydrogenase AP9108_25635 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AP9108_25640 PF01475 Ferric uptake regulator family AP9108_25645 PF08534 Redoxin AP9108_25650 PF00805 Pentapeptide repeats (8 copies) AP9108_25650 PF00069 Protein kinase domain AP9108_25680 PF03109 ABC1 family AP9108_25690 PF03702 Anhydro-N-acetylmuramic acid kinase AP9108_25700 PF03880 DbpA RNA binding domain AP9108_25700 PF00270 DEAD/DEAH box helicase AP9108_25700 PF00271 Helicase conserved C-terminal domain AP9108_25715 PF00365 Phosphofructokinase AP9108_25720 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP9108_25725 PF01471 Putative peptidoglycan binding domain AP9108_25725 PF07486 Cell Wall Hydrolase AP9108_25730 PF02843 Phosphoribosylglycinamide synthetase, C domain AP9108_25730 PF02844 Phosphoribosylglycinamide synthetase, N domain AP9108_25730 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AP9108_25735 PF00672 HAMP domain AP9108_25735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_25735 PF00512 His Kinase A (phospho-acceptor) domain AP9108_25735 PF00989 PAS fold AP9108_25745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP9108_25745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP9108_25745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP9108_25745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP9108_25760 PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) AP9108_25775 PF12697 Alpha/beta hydrolase family AP9108_25780 PF00069 Protein kinase domain AP9108_25780 PF00805 Pentapeptide repeats (8 copies) AP9108_25810 PF13460 NAD(P)H-binding AP9108_25870 PF00664 ABC transporter transmembrane region AP9108_25870 PF00005 ABC transporter AP9108_25880 PF00534 Glycosyl transferases group 1 AP9108_25895 PF00085 Thioredoxin AP9108_25905 PF00118 TCP-1/cpn60 chaperonin family AP9108_25910 PF00486 Transcriptional regulatory protein, C terminal AP9108_25910 PF00072 Response regulator receiver domain AP9108_25915 PF00672 HAMP domain AP9108_25915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_25915 PF00512 His Kinase A (phospho-acceptor) domain AP9108_25915 PF13426 PAS domain AP9108_25920 PF07568 Histidine kinase AP9108_25920 PF12282 Signal transduction histidine kinase AP9108_25920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_25935 PF14622 Ribonuclease-III-like AP9108_25935 PF00035 Double-stranded RNA binding motif AP9108_25940 PF00092 von Willebrand factor type A domain AP9108_25960 PF00563 EAL domain AP9108_25960 PF00990 Diguanylate cyclase, GGDEF domain AP9108_25960 PF00360 Phytochrome region AP9108_25960 PF01590 GAF domain AP9108_25985 PF08447 PAS fold AP9108_25985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP9108_25985 PF13426 PAS domain AP9108_25990 PF00348 Polyprenyl synthetase AP9108_25995 PF04055 Radical SAM superfamily AP9108_26000 PF01253 Translation initiation factor SUI1 AP9108_26035 PF02578 Multi-copper polyphenol oxidoreductase laccase AP9108_26040 PF02237 Biotin protein ligase C terminal domain AP9108_26040 PF03099 Biotin/lipoate A/B protein ligase family AP9108_26040 PF08279 HTH domain AP9108_26045 PF01551 Peptidase family M23 AP9108_26045 PF04225 Opacity-associated protein A LysM-like domain AP9108_26055 PF01451 Low molecular weight phosphotyrosine protein phosphatase AP9108_26060 PF00072 Response regulator receiver domain AP9108_26105 PF01928 CYTH domain AP9108_26110 PF09150 Orange carotenoid protein, N-terminal AP9108_26110 PF02136 Nuclear transport factor 2 (NTF2) domain AP9108_26115 PF18032 Photoprotection regulator fluorescence recovery protein AP9108_26120 PF00294 pfkB family carbohydrate kinase AP9108_26125 PF00196 Bacterial regulatory proteins, luxR family AP9108_26125 PF00072 Response regulator receiver domain AP9108_26135 PF03129 Anticodon binding domain AP9108_26135 PF13393 Histidyl-tRNA synthetase AP9108_26145 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AP9108_26145 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AP9108_26145 PF00400 WD domain, G-beta repeat AP9108_26145 PF00400 WD domain, G-beta repeat AP9108_26160 PF00091 Tubulin/FtsZ family, GTPase domain AP9108_26160 PF12327 FtsZ family, C-terminal domain AP9108_26170 PF00400 WD domain, G-beta repeat AP9108_26170 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AP9108_26180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_26180 PF00512 His Kinase A (phospho-acceptor) domain AP9108_26205 PF01588 Putative tRNA binding domain AP9108_26205 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AP9108_26205 PF03147 Ferredoxin-fold anticodon binding domain AP9108_26205 PF03483 B3/4 domain AP9108_26205 PF03484 tRNA synthetase B5 domain AP9108_26240 PF01975 Survival protein SurE AP9108_26265 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_26265 PF01348 Type II intron maturase AP9108_26305 PF01348 Type II intron maturase AP9108_26305 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_26310 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AP9108_26310 PF01409 tRNA synthetases class II core domain (F) AP9108_26335 PF02504 Fatty acid synthesis protein AP9108_26345 PF00698 Acyl transferase domain AP9108_26350 PF00672 HAMP domain AP9108_26350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_26350 PF00512 His Kinase A (phospho-acceptor) domain AP9108_26350 PF13426 PAS domain AP9108_26460 PF02261 Aspartate decarboxylase AP9108_26465 PF12323 Helix-turn-helix domain AP9108_26465 PF07282 Putative transposase DNA-binding domain AP9108_26465 PF01385 Probable transposase AP9108_26530 PF13545 Crp-like helix-turn-helix domain AP9108_26530 PF00027 Cyclic nucleotide-binding domain AP9108_26550 PF01348 Type II intron maturase AP9108_26550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_26595 PF03129 Anticodon binding domain AP9108_26595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP9108_26595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AP9108_26610 PF10792 Protein of unknown function (DUF2605) AP9108_26870 PF01348 Type II intron maturase AP9108_26870 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_26940 PF07724 AAA domain (Cdc48 subfamily) AP9108_26940 PF17871 AAA lid domain AP9108_26940 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_26940 PF02861 Clp amino terminal domain, pathogenicity island component AP9108_26940 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_26955 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_26955 PF07724 AAA domain (Cdc48 subfamily) AP9108_26955 PF17871 AAA lid domain AP9108_26955 PF02861 Clp amino terminal domain, pathogenicity island component AP9108_26955 PF10431 C-terminal, D2-small domain, of ClpB protein AP9108_26970 PF00881 Nitroreductase family AP9108_27065 PF00082 Subtilase family AP9108_27115 PF01613 Flavin reductase like domain AP9108_27115 PF00753 Metallo-beta-lactamase superfamily AP9108_27135 PF04101 Glycosyltransferase family 28 C-terminal domain AP9108_27135 PF03033 Glycosyltransferase family 28 N-terminal domain AP9108_27155 PF13191 AAA ATPase domain AP9108_27155 PF00069 Protein kinase domain AP9108_27160 PF00117 Glutamine amidotransferase class-I AP9108_27170 PF03819 MazG nucleotide pyrophosphohydrolase domain AP9108_27215 PF13419 Haloacid dehalogenase-like hydrolase AP9108_27235 PF02254 TrkA-N domain AP9108_27235 PF07885 Ion channel AP9108_27250 PF00361 Proton-conducting membrane transporter AP9108_27255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AP9108_27255 PF00361 Proton-conducting membrane transporter AP9108_27255 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AP9108_27260 PF00361 Proton-conducting membrane transporter AP9108_27265 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AP9108_27265 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AP9108_27265 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AP9108_27270 PF16363 GDP-mannose 4,6 dehydratase AP9108_27290 PF01699 Sodium/calcium exchanger protein AP9108_27295 PF03485 Arginyl tRNA synthetase N terminal domain AP9108_27295 PF05746 DALR anticodon binding domain AP9108_27295 PF00750 tRNA synthetases class I (R) AP9108_27315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_27315 PF00512 His Kinase A (phospho-acceptor) domain AP9108_27315 PF00072 Response regulator receiver domain AP9108_27315 PF09308 LuxQ, periplasmic AP9108_27320 PF03707 Bacterial signalling protein N terminal repeat AP9108_27320 PF00990 Diguanylate cyclase, GGDEF domain AP9108_27320 PF00563 EAL domain AP9108_27325 PF02580 D-Tyr-tRNA(Tyr) deacylase AP9108_27330 PF07683 Cobalamin synthesis protein cobW C-terminal domain AP9108_27330 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP9108_27335 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AP9108_27335 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_27365 PF00534 Glycosyl transferases group 1 AP9108_27365 PF00862 Sucrose synthase AP9108_27380 PF00152 tRNA synthetases class II (D, K and N) AP9108_27380 PF01336 OB-fold nucleic acid binding domain AP9108_27440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP9108_27440 PF03466 LysR substrate binding domain AP9108_27705 PF18643 BsaWI restriction endonuclease type 2 AP9108_27710 PF00145 C-5 cytosine-specific DNA methylase AP9108_27725 PF00069 Protein kinase domain AP9108_27725 PF00805 Pentapeptide repeats (8 copies) AP9108_27770 PF01235 Sodium:alanine symporter family AP9108_27785 PF00400 WD domain, G-beta repeat AP9108_27785 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AP9108_27790 PF04055 Radical SAM superfamily AP9108_27805 PF17866 AAA lid domain AP9108_27805 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_27825 PF05419 GUN4-like AP9108_27825 PF16416 ARM-like repeat domain, GUN4-N terminal AP9108_27835 PF16416 ARM-like repeat domain, GUN4-N terminal AP9108_27835 PF05419 GUN4-like AP9108_27890 PF16416 ARM-like repeat domain, GUN4-N terminal AP9108_27890 PF05419 GUN4-like AP9108_27895 PF05419 GUN4-like AP9108_27895 PF16416 ARM-like repeat domain, GUN4-N terminal AP9108_27915 PF13180 PDZ domain AP9108_27915 PF17820 PDZ domain AP9108_27930 PF07444 Ycf66 protein N-terminus AP9108_27935 PF00510 Cytochrome c oxidase subunit III AP9108_27940 PF00115 Cytochrome C and Quinol oxidase polypeptide I AP9108_27945 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AP9108_27945 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AP9108_27955 PF01040 UbiA prenyltransferase family AP9108_27965 PF00360 Phytochrome region AP9108_27965 PF00990 Diguanylate cyclase, GGDEF domain AP9108_27965 PF01590 GAF domain AP9108_27965 PF00563 EAL domain AP9108_27970 PF01590 GAF domain AP9108_27970 PF00360 Phytochrome region AP9108_27970 PF08446 PAS fold AP9108_27970 PF00512 His Kinase A (phospho-acceptor) domain AP9108_27970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_27975 PF00072 Response regulator receiver domain AP9108_27975 PF01627 Hpt domain AP9108_27975 PF00512 His Kinase A (phospho-acceptor) domain AP9108_27975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_27980 PF00990 Diguanylate cyclase, GGDEF domain AP9108_27980 PF01590 GAF domain AP9108_27980 PF00563 EAL domain AP9108_27980 PF00360 Phytochrome region AP9108_27985 PF00400 WD domain, G-beta repeat AP9108_27995 PF00395 S-layer homology domain AP9108_27995 PF04966 Carbohydrate-selective porin, OprB family AP9108_28000 PF08865 Domain of unknown function (DUF1830) AP9108_28040 PF06596 Photosystem II reaction centre X protein (PsbX) AP9108_28050 PF00289 Biotin carboxylase, N-terminal domain AP9108_28050 PF02785 Biotin carboxylase C-terminal domain AP9108_28050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP9108_28075 PF01348 Type II intron maturase AP9108_28075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_28195 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_28195 PF12911 N-terminal TM domain of oligopeptide transport permease C AP9108_28210 PF00395 S-layer homology domain AP9108_28210 PF00963 Cohesin domain AP9108_28235 PF01348 Type II intron maturase AP9108_28235 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_28295 PF07730 Histidine kinase AP9108_28300 PF00072 Response regulator receiver domain AP9108_28300 PF00196 Bacterial regulatory proteins, luxR family AP9108_28340 PF13361 UvrD-like helicase C-terminal domain AP9108_28340 PF00580 UvrD/REP helicase N-terminal domain AP9108_28340 PF12705 PD-(D/E)XK nuclease superfamily AP9108_28350 PF00069 Protein kinase domain AP9108_28355 PF00294 pfkB family carbohydrate kinase AP9108_28370 PF00403 Heavy-metal-associated domain AP9108_28375 PF00117 Glutamine amidotransferase class-I AP9108_28375 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AP9108_28380 PF01740 STAS domain AP9108_28385 PF08032 RNA 2'-O ribose methyltransferase substrate binding AP9108_28385 PF00588 SpoU rRNA Methylase family AP9108_28425 PF00145 C-5 cytosine-specific DNA methylase AP9108_28445 PF00809 Pterin binding enzyme AP9108_28450 PF00121 Triosephosphate isomerase AP9108_28460 PF12697 Alpha/beta hydrolase family AP9108_28470 PF12706 Beta-lactamase superfamily domain AP9108_28480 PF17792 ThiD2 family AP9108_28480 PF02581 Thiamine monophosphate synthase AP9108_28485 PF01370 NAD dependent epimerase/dehydratase family AP9108_28500 PF01628 HrcA protein C terminal domain AP9108_28505 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AP9108_28510 PF16363 GDP-mannose 4,6 dehydratase AP9108_28520 PF09587 Bacterial capsule synthesis protein PGA_cap AP9108_28550 PF00005 ABC transporter AP9108_28555 PF08245 Mur ligase middle domain AP9108_28555 PF01225 Mur ligase family, catalytic domain AP9108_28555 PF02875 Mur ligase family, glutamate ligase domain AP9108_28570 PF09285 Elongation factor P, C-terminal AP9108_28570 PF01132 Elongation factor P (EF-P) OB domain AP9108_28570 PF08207 Elongation factor P (EF-P) KOW-like domain AP9108_28575 PF00364 Biotin-requiring enzyme AP9108_28590 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AP9108_28600 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP9108_28600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_28600 PF00512 His Kinase A (phospho-acceptor) domain AP9108_28605 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AP9108_28605 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AP9108_28615 PF13085 2Fe-2S iron-sulfur cluster binding domain AP9108_28620 PF01385 Probable transposase AP9108_28620 PF07282 Putative transposase DNA-binding domain AP9108_28620 PF12323 Helix-turn-helix domain AP9108_28630 PF01242 6-pyruvoyl tetrahydropterin synthase AP9108_28650 PF00498 FHA domain AP9108_28650 PF00005 ABC transporter AP9108_28650 PF01061 ABC-2 type transporter AP9108_28675 PF12169 DNA polymerase III subunits gamma and tau domain III AP9108_28680 PF02223 Thymidylate kinase AP9108_28690 PF00124 Photosynthetic reaction centre protein AP9108_28725 PF00453 Ribosomal protein L20 AP9108_28730 PF01632 Ribosomal protein L35 AP9108_28735 PF14489 QueF-like protein AP9108_28745 PF02675 S-adenosylmethionine decarboxylase AP9108_28760 PF02638 Glycosyl hydrolase-like 10 AP9108_28765 PF00535 Glycosyl transferase family 2 AP9108_28790 PF12704 MacB-like periplasmic core domain AP9108_28790 PF02687 FtsX-like permease family AP9108_28790 PF00005 ABC transporter AP9108_28805 PF00440 Bacterial regulatory proteins, tetR family AP9108_28805 PF18665 Tetracyclin repressor-like, C-terminal domain AP9108_28815 PF01926 50S ribosome-binding GTPase AP9108_28815 PF07650 KH domain AP9108_28820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP9108_28825 PF12704 MacB-like periplasmic core domain AP9108_28825 PF00005 ABC transporter AP9108_28825 PF02687 FtsX-like permease family AP9108_28830 PF08486 Stage II sporulation protein AP9108_28835 PF17674 HHH domain AP9108_28835 PF00575 S1 RNA binding domain AP9108_28835 PF09371 Tex-like protein N-terminal domain AP9108_28835 PF16921 Tex protein YqgF-like domain AP9108_28855 PF00561 alpha/beta hydrolase fold AP9108_28865 PF09423 PhoD-like phosphatase AP9108_28865 PF16655 PhoD-like phosphatase, N-terminal domain AP9108_28875 PF12697 Alpha/beta hydrolase family AP9108_28880 PF00133 tRNA synthetases class I (I, L, M and V) AP9108_28880 PF09334 tRNA synthetases class I (M) AP9108_28880 PF08264 Anticodon-binding domain of tRNA AP9108_28895 PF00485 Phosphoribulokinase / Uridine kinase family AP9108_28920 PF01479 S4 domain AP9108_28920 PF00163 Ribosomal protein S4/S9 N-terminal domain AP9108_28930 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AP9108_28935 PF00483 Nucleotidyl transferase AP9108_28940 PF01370 NAD dependent epimerase/dehydratase family AP9108_28945 PF08421 Putative zinc binding domain AP9108_28945 PF08484 C-methyltransferase C-terminal domain AP9108_28955 PF08041 PetM family of cytochrome b6f complex subunit 7 AP9108_28960 PF13460 NAD(P)H-binding AP9108_28965 PF01513 ATP-NAD kinase AP9108_28970 PF00072 Response regulator receiver domain AP9108_28970 PF00486 Transcriptional regulatory protein, C terminal AP9108_28985 PF04015 Domain of unknown function (DUF362) AP9108_28990 PF08241 Methyltransferase domain AP9108_29025 PF00889 Elongation factor TS AP9108_29030 PF00318 Ribosomal protein S2 AP9108_29035 PF08078 PsaX family AP9108_29210 PF01348 Type II intron maturase AP9108_29210 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_29230 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_29230 PF01348 Type II intron maturase AP9108_29250 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_29250 PF01348 Type II intron maturase AP9108_29315 PF08245 Mur ligase middle domain AP9108_29315 PF02875 Mur ligase family, glutamate ligase domain AP9108_29325 PF01716 Manganese-stabilising protein / photosystem II polypeptide AP9108_29330 PF00696 Amino acid kinase family AP9108_29340 PF00291 Pyridoxal-phosphate dependent enzyme AP9108_29350 PF00570 HRDC domain AP9108_29350 PF01612 3'-5' exonuclease AP9108_29375 PF01192 RNA polymerase Rpb6 AP9108_29385 PF01042 Endoribonuclease L-PSP AP9108_29390 PF05922 Peptidase inhibitor I9 AP9108_29390 PF00082 Subtilase family AP9108_29400 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_29405 PF04012 PspA/IM30 family AP9108_29425 PF00378 Enoyl-CoA hydratase/isomerase AP9108_29430 PF00586 AIR synthase related protein, N-terminal domain AP9108_29430 PF02769 AIR synthase related protein, C-terminal domain AP9108_29435 PF03330 Lytic transglycolase AP9108_29440 PF02569 Pantoate-beta-alanine ligase AP9108_29440 PF02224 Cytidylate kinase AP9108_29445 PF01522 Polysaccharide deacetylase AP9108_29450 PF02391 MoaE protein AP9108_29455 PF04542 Sigma-70 region 2 AP9108_29455 PF08281 Sigma-70, region 4 AP9108_29480 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus AP9108_29485 PF04024 PspC domain AP9108_29495 PF01522 Polysaccharide deacetylase AP9108_29565 PF07499 RuvA, C-terminal domain AP9108_29565 PF01330 RuvA N terminal domain AP9108_29595 PF17782 DprA winged helix domain AP9108_29595 PF02481 DNA recombination-mediator protein A AP9108_29605 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AP9108_29620 PF02673 Bacitracin resistance protein BacA AP9108_29630 PF01520 N-acetylmuramoyl-L-alanine amidase AP9108_29635 PF00578 AhpC/TSA family AP9108_29640 PF13344 Haloacid dehalogenase-like hydrolase AP9108_29640 PF00293 NUDIX domain AP9108_29645 PF00561 alpha/beta hydrolase fold AP9108_29650 PF03309 Type III pantothenate kinase AP9108_29655 PF00805 Pentapeptide repeats (8 copies) AP9108_29655 PF00069 Protein kinase domain AP9108_29675 PF00999 Sodium/hydrogen exchanger family AP9108_29675 PF00582 Universal stress protein family AP9108_29710 PF05746 DALR anticodon binding domain AP9108_29710 PF02092 Glycyl-tRNA synthetase beta subunit AP9108_29730 PF00355 Rieske [2Fe-2S] domain AP9108_29745 PF03816 Cell envelope-related transcriptional attenuator domain AP9108_29755 PF00834 Ribulose-phosphate 3 epimerase family AP9108_29765 PF00072 Response regulator receiver domain AP9108_29765 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_29785 PF00528 Binding-protein-dependent transport system inner membrane component AP9108_29795 PF08148 DSHCT (NUC185) domain AP9108_29795 PF00270 DEAD/DEAH box helicase AP9108_29795 PF00271 Helicase conserved C-terminal domain AP9108_29800 PF01926 50S ribosome-binding GTPase AP9108_29800 PF12631 MnmE helical domain AP9108_29800 PF10396 GTP-binding protein TrmE N-terminus AP9108_29810 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AP9108_29815 PF01795 MraW methylase family AP9108_29820 PF00072 Response regulator receiver domain AP9108_29820 PF00158 Sigma-54 interaction domain AP9108_29820 PF02954 Bacterial regulatory protein, Fis family AP9108_29830 PF08331 Domain of unknown function (DUF1730) AP9108_29845 PF02702 Osmosensitive K+ channel His kinase sensor domain AP9108_29865 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_29865 PF01348 Type II intron maturase AP9108_29965 PF00069 Protein kinase domain AP9108_29975 PF16416 ARM-like repeat domain, GUN4-N terminal AP9108_29975 PF05419 GUN4-like AP9108_29990 PF02195 ParB-like nuclease domain AP9108_30005 PF00069 Protein kinase domain AP9108_30010 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_30010 PF01348 Type II intron maturase AP9108_30045 PF00034 Cytochrome c AP9108_30045 PF03150 Di-haem cytochrome c peroxidase AP9108_30065 PF00391 PEP-utilising enzyme, mobile domain AP9108_30065 PF00224 Pyruvate kinase, barrel domain AP9108_30065 PF02887 Pyruvate kinase, alpha/beta domain AP9108_30130 PF00561 alpha/beta hydrolase fold AP9108_30135 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) AP9108_30150 PF06480 FtsH Extracellular AP9108_30150 PF17862 AAA+ lid domain AP9108_30150 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_30150 PF01434 Peptidase family M41 AP9108_30155 PF00128 Alpha amylase, catalytic domain AP9108_30155 PF09154 Domain of unknown function (DUF1939) AP9108_30165 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AP9108_30175 PF02653 Branched-chain amino acid transport system / permease component AP9108_30185 PF12399 Branched-chain amino acid ATP-binding cassette transporter AP9108_30185 PF00005 ABC transporter AP9108_30190 PF00005 ABC transporter AP9108_30195 PF01266 FAD dependent oxidoreductase AP9108_30195 PF05690 Thiazole biosynthesis protein ThiG AP9108_30205 PF00106 short chain dehydrogenase AP9108_30290 PF01124 MAPEG family AP9108_30300 PF00360 Phytochrome region AP9108_30300 PF00563 EAL domain AP9108_30300 PF00990 Diguanylate cyclase, GGDEF domain AP9108_30300 PF01590 GAF domain AP9108_30305 PF00155 Aminotransferase class I and II AP9108_30305 PF00392 Bacterial regulatory proteins, gntR family AP9108_30325 PF00288 GHMP kinases N terminal domain AP9108_30325 PF08544 GHMP kinases C terminal AP9108_30350 PF00805 Pentapeptide repeats (8 copies) AP9108_30350 PF00069 Protein kinase domain AP9108_30355 PF01348 Type II intron maturase AP9108_30355 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_30375 PF00342 Phosphoglucose isomerase AP9108_30380 PF01515 Phosphate acetyl/butaryl transferase AP9108_30380 PF07085 DRTGG domain AP9108_30385 PF00563 EAL domain AP9108_30385 PF01590 GAF domain AP9108_30385 PF00989 PAS fold AP9108_30385 PF00990 Diguanylate cyclase, GGDEF domain AP9108_30390 PF00498 FHA domain AP9108_30390 PF00563 EAL domain AP9108_30390 PF00990 Diguanylate cyclase, GGDEF domain AP9108_30400 PF01638 HxlR-like helix-turn-helix AP9108_30405 PF02896 PEP-utilising enzyme, TIM barrel domain AP9108_30405 PF00391 PEP-utilising enzyme, mobile domain AP9108_30405 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AP9108_30415 PF02941 Ferredoxin thioredoxin reductase variable alpha chain AP9108_30425 PF00005 ABC transporter AP9108_30425 PF06472 ABC transporter transmembrane region 2 AP9108_30430 PF00111 2Fe-2S iron-sulfur cluster binding domain AP9108_30455 PF00512 His Kinase A (phospho-acceptor) domain AP9108_30455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_30455 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP9108_30475 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_30475 PF01348 Type II intron maturase AP9108_30530 PF01121 Dephospho-CoA kinase AP9108_30535 PF01126 Heme oxygenase AP9108_30540 PF01975 Survival protein SurE AP9108_30550 PF00989 PAS fold AP9108_30550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_30550 PF00512 His Kinase A (phospho-acceptor) domain AP9108_30565 PF02463 RecF/RecN/SMC N terminal domain AP9108_30570 PF00072 Response regulator receiver domain AP9108_30570 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_30580 PF07282 Putative transposase DNA-binding domain AP9108_30580 PF01385 Probable transposase AP9108_30580 PF12323 Helix-turn-helix domain AP9108_30585 PF02780 Transketolase, C-terminal domain AP9108_30585 PF00364 Biotin-requiring enzyme AP9108_30585 PF02779 Transketolase, pyrimidine binding domain AP9108_30590 PF07549 SecD/SecF GG Motif AP9108_30590 PF02355 Protein export membrane protein AP9108_30595 PF02355 Protein export membrane protein AP9108_30595 PF07549 SecD/SecF GG Motif AP9108_30610 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP9108_30615 PF01924 Hydrogenase formation hypA family AP9108_30635 PF00586 AIR synthase related protein, N-terminal domain AP9108_30635 PF02769 AIR synthase related protein, C-terminal domain AP9108_30650 PF00266 Aminotransferase class-V AP9108_30655 PF01555 DNA methylase AP9108_30670 PF05139 Erythromycin esterase AP9108_30670 PF00156 Phosphoribosyl transferase domain AP9108_30675 PF03167 Uracil DNA glycosylase superfamily AP9108_30695 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AP9108_30695 PF08501 Shikimate dehydrogenase substrate binding domain AP9108_30705 PF01556 DnaJ C terminal domain AP9108_30705 PF00684 DnaJ central domain AP9108_30705 PF00226 DnaJ domain AP9108_30715 PF00583 Acetyltransferase (GNAT) family AP9108_30725 PF12804 MobA-like NTP transferase domain AP9108_30780 PF16124 RecQ zinc-binding AP9108_30780 PF00270 DEAD/DEAH box helicase AP9108_30780 PF00271 Helicase conserved C-terminal domain AP9108_30785 PF00561 alpha/beta hydrolase fold AP9108_30790 PF03009 Glycerophosphoryl diester phosphodiesterase family AP9108_30825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AP9108_30850 PF00474 Sodium:solute symporter family AP9108_30865 PF01348 Type II intron maturase AP9108_30865 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_31000 PF01348 Type II intron maturase AP9108_31000 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_31030 PF00069 Protein kinase domain AP9108_31030 PF03793 PASTA domain AP9108_31080 PF01523 Putative modulator of DNA gyrase AP9108_31085 PF01523 Putative modulator of DNA gyrase AP9108_31090 PF02617 ATP-dependent Clp protease adaptor protein ClpS AP9108_31105 PF01894 Uncharacterised protein family UPF0047 AP9108_31120 PF02754 Cysteine-rich domain AP9108_31120 PF13183 4Fe-4S dicluster domain AP9108_31125 PF01565 FAD binding domain AP9108_31125 PF02913 FAD linked oxidases, C-terminal domain AP9108_31130 PF03707 Bacterial signalling protein N terminal repeat AP9108_31130 PF00990 Diguanylate cyclase, GGDEF domain AP9108_31130 PF00563 EAL domain AP9108_31140 PF01380 SIS domain AP9108_31150 PF12838 4Fe-4S dicluster domain AP9108_31155 PF02754 Cysteine-rich domain AP9108_31160 PF00550 Phosphopantetheine attachment site AP9108_31165 PF00109 Beta-ketoacyl synthase, N-terminal domain AP9108_31165 PF02801 Beta-ketoacyl synthase, C-terminal domain AP9108_31170 PF01177 Asp/Glu/Hydantoin racemase AP9108_31175 PF03477 ATP cone domain AP9108_31180 PF01405 Photosystem II reaction centre T protein AP9108_31185 PF00421 Photosystem II protein AP9108_31195 PF13439 Glycosyltransferase Family 4 AP9108_31195 PF00534 Glycosyl transferases group 1 AP9108_31200 PF01594 AI-2E family transporter AP9108_31205 PF13188 PAS domain AP9108_31205 PF00989 PAS fold AP9108_31205 PF00512 His Kinase A (phospho-acceptor) domain AP9108_31205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP9108_31210 PF00072 Response regulator receiver domain AP9108_31210 PF00486 Transcriptional regulatory protein, C terminal AP9108_31215 PF00211 Adenylate and Guanylate cyclase catalytic domain AP9108_31220 PF10726 Protein of function (DUF2518) AP9108_31235 PF01040 UbiA prenyltransferase family AP9108_31240 PF01370 NAD dependent epimerase/dehydratase family AP9108_31260 PF05199 GMC oxidoreductase AP9108_31260 PF00732 GMC oxidoreductase AP9108_31275 PF13614 AAA domain AP9108_31280 PF02233 NAD(P) transhydrogenase beta subunit AP9108_31285 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AP9108_31300 PF00468 Ribosomal protein L34 AP9108_31305 PF00825 Ribonuclease P AP9108_31315 PF02096 60Kd inner membrane protein AP9108_31330 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_31330 PF01434 Peptidase family M41 AP9108_31330 PF17862 AAA+ lid domain AP9108_31330 PF06480 FtsH Extracellular AP9108_31345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP9108_31370 PF00999 Sodium/hydrogen exchanger family AP9108_31370 PF03471 Transporter associated domain AP9108_31395 PF00311 Phosphoenolpyruvate carboxylase AP9108_31415 PF01050 Mannose-6-phosphate isomerase AP9108_31415 PF00483 Nucleotidyl transferase AP9108_31425 PF00248 Aldo/keto reductase family AP9108_31440 PF02654 Cobalamin-5-phosphate synthase AP9108_31450 PF01702 Queuine tRNA-ribosyltransferase AP9108_31455 PF02533 Photosystem II 4 kDa reaction centre component AP9108_31470 PF00291 Pyridoxal-phosphate dependent enzyme AP9108_31475 PF00035 Double-stranded RNA binding motif AP9108_31475 PF00636 Ribonuclease III domain AP9108_31485 PF00124 Photosynthetic reaction centre protein AP9108_31540 PF04055 Radical SAM superfamily AP9108_31540 PF13186 Iron-sulfur cluster-binding domain AP9108_31555 PF05685 Putative restriction endonuclease AP9108_31560 PF00124 Photosynthetic reaction centre protein AP9108_31565 PF08669 Glycine cleavage T-protein C-terminal barrel domain AP9108_31565 PF01571 Aminomethyltransferase folate-binding domain AP9108_31665 PF02638 Glycosyl hydrolase-like 10 AP9108_31670 PF03062 MBOAT, membrane-bound O-acyltransferase family AP9108_31675 PF00009 Elongation factor Tu GTP binding domain AP9108_31675 PF00679 Elongation factor G C-terminus AP9108_31675 PF06421 GTP-binding protein LepA C-terminus AP9108_31675 PF03144 Elongation factor Tu domain 2 AP9108_31685 PF10502 Signal peptidase, peptidase S26 AP9108_31705 PF00294 pfkB family carbohydrate kinase AP9108_31710 PF14693 Ribosomal protein TL5, C-terminal domain AP9108_31710 PF01386 Ribosomal L25p family AP9108_31715 PF00709 Adenylosuccinate synthetase AP9108_31735 PF01612 3'-5' exonuclease AP9108_31735 PF00476 DNA polymerase family A AP9108_31735 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AP9108_31735 PF01367 5'-3' exonuclease, C-terminal SAM fold AP9108_31750 PF00486 Transcriptional regulatory protein, C terminal AP9108_31750 PF00072 Response regulator receiver domain AP9108_31755 PF01740 STAS domain AP9108_31765 PF00210 Ferritin-like domain AP9108_31770 PF00575 S1 RNA binding domain AP9108_31780 PF00438 S-adenosylmethionine synthetase, N-terminal domain AP9108_31780 PF02772 S-adenosylmethionine synthetase, central domain AP9108_31780 PF02773 S-adenosylmethionine synthetase, C-terminal domain AP9108_31785 PF05690 Thiazole biosynthesis protein ThiG AP9108_31800 PF00486 Transcriptional regulatory protein, C terminal AP9108_31800 PF00072 Response regulator receiver domain AP9108_31805 PF01593 Flavin containing amine oxidoreductase AP9108_31815 PF00145 C-5 cytosine-specific DNA methylase AP9108_31820 PF01713 Smr domain AP9108_31820 PF00488 MutS domain V AP9108_31850 PF13462 Thioredoxin AP9108_31850 PF06965 Na+/H+ antiporter 1 AP9108_31920 PF17758 Proteasomal ATPase OB N-terminal domain AP9108_31920 PF16450 Proteasomal ATPase OB C-terminal domain AP9108_31920 PF00004 ATPase family associated with various cellular activities (AAA) AP9108_31930 PF12849 PBP superfamily domain AP9108_32035 PF08032 RNA 2'-O ribose methyltransferase substrate binding AP9108_32035 PF00588 SpoU rRNA Methylase family AP9108_32045 PF14602 Hexapeptide repeat of succinyl-transferase AP9108_32045 PF00132 Bacterial transferase hexapeptide (six repeats) AP9108_32045 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AP9108_32055 PF04055 Radical SAM superfamily AP9108_32060 PF11780 Protein of unknown function (DUF3318) AP9108_32075 PF09367 CpeS-like protein AP9108_32085 PF02374 Anion-transporting ATPase AP9108_32085 PF17886 HSP20-like domain found in ArsA AP9108_32100 PF01348 Type II intron maturase AP9108_32100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP9108_32120 PF04085 rod shape-determining protein MreC AP9108_32130 PF09506 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) AP9108_32175 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AP9108_32175 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AP9108_32195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AP9108_32195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AP9108_32205 PF00330 Aconitase family (aconitate hydratase) AP9108_32210 PF00694 Aconitase C-terminal domain AP9108_32215 PF00551 Formyl transferase AP9108_32220 PF13537 Glutamine amidotransferase domain AP9108_32220 PF00733 Asparagine synthase AP9108_32245 PF13419 Haloacid dehalogenase-like hydrolase AP9108_32375 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system