AYWB_001 PF00308 Bacterial dnaA protein AYWB_001 PF08299 Bacterial dnaA protein helix-turn-helix AYWB_001 PF11638 DnaA N-terminal domain AYWB_002 PF00712 DNA polymerase III beta subunit, N-terminal domain AYWB_002 PF02767 DNA polymerase III beta subunit, central domain AYWB_002 PF02768 DNA polymerase III beta subunit, C-terminal domain AYWB_003 PF01250 Ribosomal protein S6 AYWB_004 PF00436 Single-strand binding protein family AYWB_005 PF01084 Ribosomal protein S18 AYWB_006 PF01281 Ribosomal protein L9, N-terminal domain AYWB_006 PF01368 DHH family AYWB_006 PF02272 DHHA1 domain AYWB_006 PF03948 Ribosomal protein L9, C-terminal domain AYWB_007 PF00772 DnaB-like helicase N terminal domain AYWB_007 PF03796 DnaB-like helicase C terminal domain AYWB_008 PF00472 RF-1 domain AYWB_008 PF03462 PCRF domain AYWB_009 PF01300 Telomere recombination AYWB_010 PF06144 DNA polymerase III, delta subunit AYWB_011 PF01926 50S ribosome-binding GTPase AYWB_012 PF00133 tRNA synthetases class I (I, L, M and V) AYWB_012 PF08264 Anticodon-binding domain of tRNA AYWB_012 PF10458 Valyl tRNA synthetase tRNA binding arm AYWB_013 PF07155 ECF-type riboflavin transporter, S component AYWB_014 PF00005 ABC transporter AYWB_014 PF12558 AYWB_014 AYWB_015 PF02361 Cobalt transport protein AYWB_016 PF13365 Trypsin-like peptidase domain AYWB_017 PF00011 Hsp20/alpha crystallin family AYWB_018 PF00122 E1-E2 ATPase AYWB_018 PF00689 Cation transporting ATPase, C-terminus AYWB_018 PF00690 Cation transporter/ATPase, N-terminus AYWB_018 PF13246 Putative hydrolase of sodium-potassium ATPase alpha subunit AYWB_022 PF12113 AYWB_022 AYWB_025 PF00317 Ribonucleotide reductase, all-alpha domain AYWB_025 PF02867 Ribonucleotide reductase, barrel domain AYWB_025 PF07972 NrdI Flavodoxin like AYWB_025 PF08343 Ribonucleotide reductase N-terminal AYWB_026 PF00268 Ribonucleotide reductase, small chain AYWB_027 PF01741 Large-conductance mechanosensitive channel, MscL AYWB_028 PF00005 ABC transporter AYWB_028 PF00664 ABC transporter transmembrane region AYWB_029 PF00005 ABC transporter AYWB_029 PF00664 ABC transporter transmembrane region AYWB_032 PF12113 AYWB_032 AYWB_033 PF12113 AYWB_033 AYWB_037 PF13538 UvrD-like helicase C-terminal domain AYWB_045 PF04542 Sigma-70 region 2 AYWB_048 PF13155 Toprim-like AYWB_050 PF13276 AYWB_050 AYWB_051 PF00390 Malic enzyme, N-terminal domain AYWB_051 PF03949 Malic enzyme, NAD binding domain AYWB_052 PF03390 AYWB_052 AYWB_053 PF01066 CDP-alcohol phosphatidyltransferase AYWB_054 PF00270 DEAD/DEAH box helicase AYWB_054 PF00271 Helicase conserved C-terminal domain AYWB_054 PF03880 DbpA RNA binding domain AYWB_059 PF01628 HrcA protein C terminal domain AYWB_060 PF01025 GrpE AYWB_061 PF00012 Hsp70 protein AYWB_062 PF00226 DnaJ domain AYWB_062 PF00684 DnaJ central domain AYWB_062 PF01556 DnaJ C terminal domain AYWB_064 PF00448 SRP54-type protein, GTPase domain AYWB_064 PF02881 SRP54-type protein, helical bundle domain AYWB_065 PF00448 SRP54-type protein, GTPase domain AYWB_065 PF02881 SRP54-type protein, helical bundle domain AYWB_065 PF02978 Signal peptide binding domain AYWB_066 PF01367 5'-3' exonuclease, C-terminal SAM fold AYWB_066 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYWB_067 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYWB_067 PF06827 Zinc finger found in FPG and IleRS AYWB_067 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYWB_068 PF07261 Replication initiation and membrane attachment AYWB_069 PF01695 IstB-like ATP binding protein AYWB_070 PF00313 'Cold-shock' DNA-binding domain AYWB_073 PF12113 AYWB_073 AYWB_074 PF02223 Thymidylate kinase AYWB_077 PF03796 DnaB-like helicase C terminal domain AYWB_078 PF03796 DnaB-like helicase C terminal domain AYWB_084 PF11178 AYWB_084 AYWB_085 PF00580 UvrD/REP helicase N-terminal domain AYWB_085 PF13361 UvrD-like helicase C-terminal domain AYWB_085 PF13538 UvrD-like helicase C-terminal domain AYWB_086 PF08275 DNA primase catalytic core, N-terminal domain AYWB_087 PF13155 Toprim-like AYWB_088 PF13276 AYWB_088 AYWB_090 PF02734 DAK2 domain AYWB_090 PF13684 Dihydroxyacetone kinase family AYWB_092 PF13343 Bacterial extracellular solute-binding protein AYWB_093 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_094 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_095 PF00005 ABC transporter AYWB_095 PF08402 TOBE domain AYWB_096 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_096 PF01434 Peptidase family M41 AYWB_099 PF02645 Uncharacterised protein, DegV family COG1307 AYWB_100 PF08282 haloacid dehalogenase-like hydrolase AYWB_101 PF00753 Metallo-beta-lactamase superfamily AYWB_101 PF07521 RNA-metabolising metallo-beta-lactamase AYWB_103 PF01351 Ribonuclease HII AYWB_103 PF11858 Domain of unknown function (DUF3378) AYWB_104 PF01230 HIT domain AYWB_106 PF12847 Methyltransferase domain AYWB_107 PF00140 Sigma-70 factor, region 1 AYWB_107 PF04539 Sigma-70 region 3 AYWB_107 PF04542 Sigma-70 region 2 AYWB_107 PF04545 Sigma-70, region 4 AYWB_108 PF01807 CHC2 zinc finger AYWB_108 PF08275 DNA primase catalytic core, N-terminal domain AYWB_108 PF13155 Toprim-like AYWB_109 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYWB_109 PF03129 Anticodon binding domain AYWB_110 PF01926 50S ribosome-binding GTPase AYWB_110 PF07650 KH domain AYWB_111 PF02130 Uncharacterized protein family UPF0054 AYWB_112 PF01165 Ribosomal protein S21 AYWB_113 PF09588 YqaJ-like viral recombinase domain AYWB_115 PF00580 UvrD/REP helicase N-terminal domain AYWB_115 PF13361 UvrD-like helicase C-terminal domain AYWB_116 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYWB_116 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AYWB_117 PF12169 DNA polymerase III subunits gamma and tau domain III AYWB_117 PF13177 DNA polymerase III, delta subunit AYWB_118 PF02575 YbaB/EbfC DNA-binding family AYWB_120 PF01066 CDP-alcohol phosphatidyltransferase AYWB_121 PF02666 AYWB_121 AYWB_122 PF00117 Glutamine amidotransferase class-I AYWB_122 PF06418 CTP synthase N-terminus AYWB_125 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYWB_125 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_128 PF00152 tRNA synthetases class II (D, K and N) AYWB_128 PF01336 OB-fold nucleic acid binding domain AYWB_129 PF02811 PHP domain AYWB_129 PF07733 Bacterial DNA polymerase III alpha subunit AYWB_129 PF14579 Helix-hairpin-helix motif AYWB_130 PF00733 Asparagine synthase AYWB_133 PF01409 tRNA synthetases class II core domain (F) AYWB_133 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYWB_134 PF01588 Putative tRNA binding domain AYWB_134 PF03147 Ferredoxin-fold anticodon binding domain AYWB_134 PF03483 B3/4 domain AYWB_134 PF03484 tRNA synthetase B5 domain AYWB_135 PF00005 ABC transporter AYWB_136 PF00676 Dehydrogenase E1 component AYWB_137 PF02779 Transketolase, pyrimidine binding domain AYWB_137 PF02780 Transketolase, C-terminal domain AYWB_138 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYWB_138 PF00364 Biotin-requiring enzyme AYWB_138 PF02817 e3 binding domain AYWB_139 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYWB_139 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYWB_140 PF01026 TatD related DNase AYWB_142 PF02504 Fatty acid synthesis protein AYWB_143 PF00035 Double-stranded RNA binding motif AYWB_143 PF14622 Ribonuclease-III-like AYWB_144 PF07261 Replication initiation and membrane attachment AYWB_146 PF11178 AYWB_146 AYWB_148 PF11178 AYWB_148 AYWB_150 PF00436 Single-strand binding protein family AYWB_151 PF00799 Geminivirus Rep catalytic domain AYWB_155 PF11178 AYWB_155 AYWB_163 PF11178 AYWB_163 AYWB_170 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_174 PF13276 AYWB_174 AYWB_175 PF00665 Integrase core domain AYWB_175 PF13276 AYWB_175 AYWB_177 PF11178 AYWB_177 AYWB_178 PF08275 DNA primase catalytic core, N-terminal domain AYWB_178 PF13155 Toprim-like AYWB_179 PF03796 DnaB-like helicase C terminal domain AYWB_181 PF02223 Thymidylate kinase AYWB_182 PF09588 YqaJ-like viral recombinase domain AYWB_187 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_192 PF00216 Bacterial DNA-binding protein AYWB_193 PF00436 Single-strand binding protein family AYWB_194 PF04542 Sigma-70 region 2 AYWB_195 PF13333 AYWB_195 AYWB_197 PF09588 YqaJ-like viral recombinase domain AYWB_202 PF12113 AYWB_202 AYWB_203 PF12113 AYWB_203 AYWB_206 PF04542 Sigma-70 region 2 AYWB_207 PF02086 D12 class N6 adenine-specific DNA methyltransferase AYWB_208 PF02086 D12 class N6 adenine-specific DNA methyltransferase AYWB_209 PF00436 Single-strand binding protein family AYWB_210 PF00216 Bacterial DNA-binding protein AYWB_213 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_215 PF00665 Integrase core domain AYWB_219 PF08275 DNA primase catalytic core, N-terminal domain AYWB_219 PF13155 Toprim-like AYWB_220 PF03796 DnaB-like helicase C terminal domain AYWB_222 PF02223 Thymidylate kinase AYWB_223 PF09588 YqaJ-like viral recombinase domain AYWB_224 PF12113 AYWB_224 AYWB_229 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_230 PF00216 Bacterial DNA-binding protein AYWB_232 PF00436 Single-strand binding protein family AYWB_233 PF04542 Sigma-70 region 2 AYWB_236 PF12113 AYWB_236 AYWB_237 PF12113 AYWB_237 AYWB_241 PF00163 Ribosomal protein S4/S9 N-terminal domain AYWB_241 PF01479 S4 domain AYWB_242 PF00122 E1-E2 ATPase AYWB_242 PF00689 Cation transporting ATPase, C-terminus AYWB_242 PF00690 Cation transporter/ATPase, N-terminus AYWB_242 PF00702 haloacid dehalogenase-like hydrolase AYWB_243 PF02457 DisA bacterial checkpoint controller nucleotide-binding AYWB_244 PF02645 Uncharacterised protein, DegV family COG1307 AYWB_246 PF00809 Pterin binding enzyme AYWB_249 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYWB_251 PF00814 Glycoprotease family AYWB_252 PF00814 Glycoprotease family AYWB_253 PF02367 Uncharacterised P-loop hydrolase UPF0079 AYWB_254 PF00521 DNA gyrase/topoisomerase IV, subunit A AYWB_254 PF03989 DNA gyrase C-terminal domain, beta-propeller AYWB_255 PF00204 DNA gyrase B AYWB_255 PF00986 DNA gyrase B subunit, carboxyl terminus AYWB_255 PF01751 Toprim domain AYWB_255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYWB_258 PF12113 AYWB_258 AYWB_262 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_263 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYWB_264 PF00005 ABC transporter AYWB_265 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_268 PF00799 Geminivirus Rep catalytic domain AYWB_269 PF11178 AYWB_269 AYWB_270 PF00799 Geminivirus Rep catalytic domain AYWB_271 PF00436 Single-strand binding protein family AYWB_272 PF00216 Bacterial DNA-binding protein AYWB_275 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_280 PF12113 AYWB_280 AYWB_282 PF02223 Thymidylate kinase AYWB_284 PF03796 DnaB-like helicase C terminal domain AYWB_285 PF08275 DNA primase catalytic core, N-terminal domain AYWB_285 PF13155 Toprim-like AYWB_287 PF00665 Integrase core domain AYWB_287 PF13276 AYWB_287 AYWB_288 PF05496 Holliday junction DNA helicase ruvB N-terminus AYWB_288 PF12002 MgsA AAA+ ATPase C terminal AYWB_288 PF16193 AYWB_288 AYWB_289 PF00665 Integrase core domain AYWB_289 PF13276 AYWB_289 AYWB_291 PF00580 UvrD/REP helicase N-terminal domain AYWB_294 PF12113 AYWB_294 AYWB_295 PF12113 AYWB_295 AYWB_297 PF11178 AYWB_297 AYWB_302 PF00293 NUDIX domain AYWB_304 PF00271 Helicase conserved C-terminal domain AYWB_304 PF01043 SecA preprotein cross-linking domain AYWB_304 PF07516 SecA Wing and Scaffold domain AYWB_304 PF07517 SecA DEAD-like domain AYWB_305 PF00472 RF-1 domain AYWB_305 PF03462 PCRF domain AYWB_306 PF00886 Ribosomal protein S16 AYWB_307 PF01746 tRNA (Guanine-1)-methyltransferase AYWB_308 PF01245 Ribosomal protein L19 AYWB_309 PF00579 tRNA synthetases class I (W and Y) AYWB_310 PF00266 Aminotransferase class-V AYWB_311 PF01592 NifU-like N terminal domain AYWB_312 PF00579 tRNA synthetases class I (W and Y) AYWB_313 PF00929 Exonuclease AYWB_313 PF02811 PHP domain AYWB_313 PF07733 Bacterial DNA polymerase III alpha subunit AYWB_313 PF14579 Helix-hairpin-helix motif AYWB_314 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_315 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYWB_315 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_316 PF00750 tRNA synthetases class I (R) AYWB_316 PF03485 Arginyl tRNA synthetase N terminal domain AYWB_316 PF05746 DALR anticodon binding domain AYWB_317 PF01261 Xylose isomerase-like TIM barrel AYWB_318 PF00270 DEAD/DEAH box helicase AYWB_318 PF00271 Helicase conserved C-terminal domain AYWB_320 PF02660 AYWB_320 AYWB_321 PF00533 BRCA1 C Terminus (BRCT) domain AYWB_321 PF01653 NAD-dependent DNA ligase adenylation domain AYWB_321 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYWB_321 PF03120 NAD-dependent DNA ligase OB-fold domain AYWB_321 PF12826 Helix-hairpin-helix motif AYWB_322 PF02650 WhiA C-terminal HTH domain AYWB_322 PF10298 WhiA N-terminal LAGLIDADG-like domain AYWB_322 PF14527 WhiA LAGLIDADG-like domain AYWB_323 PF01648 4'-phosphopantetheinyl transferase superfamily AYWB_324 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYWB_324 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYWB_326 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYWB_326 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYWB_327 PF01029 NusB family AYWB_330 PF00009 Elongation factor Tu GTP binding domain AYWB_330 PF00679 Elongation factor G C-terminus AYWB_330 PF03144 Elongation factor Tu domain 2 AYWB_330 PF06421 GTP-binding protein LepA C-terminus AYWB_331 PF01523 Putative modulator of DNA gyrase AYWB_332 PF01523 Putative modulator of DNA gyrase AYWB_333 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_333 PF02190 ATP-dependent protease La (LON) domain AYWB_333 PF05362 Lon protease (S16) C-terminal proteolytic domain AYWB_334 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYWB_334 PF05697 Bacterial trigger factor protein (TF) AYWB_334 PF05698 Bacterial trigger factor protein (TF) C-terminus AYWB_336 PF00005 ABC transporter AYWB_339 PF12113 AYWB_339 AYWB_340 PF12113 AYWB_340 AYWB_352 PF11178 AYWB_352 AYWB_354 PF04542 Sigma-70 region 2 AYWB_355 PF13276 AYWB_355 AYWB_357 PF11178 AYWB_357 AYWB_359 PF04542 Sigma-70 region 2 AYWB_361 PF00665 Integrase core domain AYWB_362 PF13276 AYWB_362 AYWB_365 PF00665 Integrase core domain AYWB_366 PF12113 AYWB_366 AYWB_367 PF12113 AYWB_367 AYWB_368 PF12113 AYWB_368 AYWB_369 PF12113 AYWB_369 AYWB_370 PF12113 AYWB_370 AYWB_374 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_375 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_377 PF00216 Bacterial DNA-binding protein AYWB_378 PF00436 Single-strand binding protein family AYWB_379 PF02086 D12 class N6 adenine-specific DNA methyltransferase AYWB_380 PF04542 Sigma-70 region 2 AYWB_381 PF00436 Single-strand binding protein family AYWB_382 PF00216 Bacterial DNA-binding protein AYWB_389 PF03796 DnaB-like helicase C terminal domain AYWB_397 PF00881 Nitroreductase family AYWB_398 PF01541 GIY-YIG catalytic domain AYWB_398 PF02151 UvrB/uvrC motif AYWB_398 PF08459 UvrC Helix-hairpin-helix N-terminal AYWB_399 PF00271 Helicase conserved C-terminal domain AYWB_399 PF02151 UvrB/uvrC motif AYWB_399 PF04851 Type III restriction enzyme, res subunit AYWB_399 PF12344 Ultra-violet resistance protein B AYWB_402 PF12113 AYWB_402 AYWB_409 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_412 PF03099 Biotin/lipoate A/B protein ligase family AYWB_412 PF10437 Bacterial lipoate protein ligase C-terminus AYWB_413 PF12822 Protein of unknown function (DUF3816) AYWB_414 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_415 PF00398 Ribosomal RNA adenine dimethylase AYWB_416 PF01411 tRNA synthetases class II (A) AYWB_416 PF02272 DHHA1 domain AYWB_416 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYWB_418 PF03652 Uncharacterised protein family (UPF0081) AYWB_419 PF01596 O-methyltransferase AYWB_420 PF01272 Transcription elongation factor, GreA/GreB, C-term AYWB_420 PF03449 Transcription elongation factor, N-terminal AYWB_421 PF09419 AYWB_421 AYWB_424 PF03602 Conserved hypothetical protein 95 AYWB_425 PF03672 AYWB_425 AYWB_426 PF14163 AYWB_426 AYWB_427 PF02566 OsmC-like protein AYWB_428 PF01553 Acyltransferase AYWB_429 PF00186 Dihydrofolate reductase AYWB_430 PF00303 Thymidylate synthase AYWB_431 PF01546 Peptidase family M20/M25/M40 AYWB_431 PF07687 Peptidase dimerisation domain AYWB_434 PF00224 Pyruvate kinase, barrel domain AYWB_434 PF02887 Pyruvate kinase, alpha/beta domain AYWB_435 PF03390 AYWB_435 AYWB_436 PF01676 Metalloenzyme superfamily AYWB_436 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYWB_437 PF00113 Enolase, C-terminal TIM barrel domain AYWB_437 PF03952 Enolase, N-terminal domain AYWB_438 PF00342 Phosphoglucose isomerase AYWB_439 PF01554 MatE AYWB_440 PF00365 Phosphofructokinase AYWB_442 PF01131 DNA topoisomerase AYWB_442 PF01396 AYWB_442 AYWB_442 PF01751 Toprim domain AYWB_443 PF01926 50S ribosome-binding GTPase AYWB_445 PF01132 Elongation factor P (EF-P) OB domain AYWB_445 PF08207 Elongation factor P (EF-P) KOW-like domain AYWB_445 PF09285 Elongation factor P, C-terminal AYWB_446 PF01715 IPP transferase AYWB_447 PF13277 YmdB-like protein AYWB_448 PF00013 KH domain AYWB_448 PF01966 HD domain AYWB_448 PF12072 AYWB_448 AYWB_450 PF02646 AYWB_450 AYWB_453 PF01134 Glucose inhibited division protein A AYWB_453 PF13932 GidA associated domain 3 AYWB_454 PF02527 rRNA small subunit methyltransferase G AYWB_455 PF12811 AYWB_455 AYWB_456 PF00009 Elongation factor Tu GTP binding domain AYWB_456 PF03143 Elongation factor Tu C-terminal domain AYWB_456 PF03144 Elongation factor Tu domain 2 AYWB_457 PF00009 Elongation factor Tu GTP binding domain AYWB_457 PF00679 Elongation factor G C-terminus AYWB_457 PF03144 Elongation factor Tu domain 2 AYWB_457 PF03764 Elongation factor G, domain IV AYWB_457 PF14492 Elongation Factor G, domain II AYWB_458 PF00177 Ribosomal protein S7p/S5e AYWB_459 PF00164 Ribosomal protein S12/S23 AYWB_460 PF00623 RNA polymerase Rpb1, domain 2 AYWB_460 PF04983 RNA polymerase Rpb1, domain 3 AYWB_460 PF04997 RNA polymerase Rpb1, domain 1 AYWB_460 PF04998 RNA polymerase Rpb1, domain 5 AYWB_460 PF05000 RNA polymerase Rpb1, domain 4 AYWB_461 PF00562 RNA polymerase Rpb2, domain 6 AYWB_461 PF04560 RNA polymerase Rpb2, domain 7 AYWB_461 PF04561 RNA polymerase Rpb2, domain 2 AYWB_461 PF04563 RNA polymerase beta subunit AYWB_461 PF04565 RNA polymerase Rpb2, domain 3 AYWB_461 PF10385 RNA polymerase beta subunit external 1 domain AYWB_462 PF00542 Ribosomal protein L7/L12 C-terminal domain AYWB_462 PF16320 AYWB_462 AYWB_463 PF00466 Ribosomal protein L10 AYWB_464 PF00687 Ribosomal protein L1p/L10e family AYWB_465 PF00298 Ribosomal protein L11, RNA binding domain AYWB_465 PF03946 Ribosomal protein L11, N-terminal domain AYWB_466 PF00467 KOW motif AYWB_466 PF02357 Transcription termination factor nusG AYWB_467 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AYWB_468 PF00588 SpoU rRNA Methylase family AYWB_468 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYWB_469 PF00122 E1-E2 ATPase AYWB_469 PF00702 haloacid dehalogenase-like hydrolase AYWB_470 PF00013 KH domain AYWB_470 PF01138 3' exoribonuclease family, domain 1 AYWB_470 PF03725 3' exoribonuclease family, domain 2 AYWB_472 PF02096 60Kd inner membrane protein AYWB_473 PF00825 Ribonuclease P AYWB_474 PF00468 Ribosomal protein L34 AYWB_475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYWB_475 PF03129 Anticodon binding domain AYWB_475 PF09180 Prolyl-tRNA synthetase, C-terminal AYWB_476 PF00471 Ribosomal protein L33 AYWB_479 PF00216 Bacterial DNA-binding protein AYWB_480 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYWB_480 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYWB_481 PF01926 50S ribosome-binding GTPase AYWB_481 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYWB_482 PF02224 Cytidylate kinase AYWB_483 PF00849 RNA pseudouridylate synthase AYWB_483 PF01479 S4 domain AYWB_484 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYWB_485 PF00085 Thioredoxin AYWB_487 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_489 PF08264 Anticodon-binding domain of tRNA AYWB_489 PF09334 tRNA synthetases class I (M) AYWB_490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYWB_491 PF13177 DNA polymerase III, delta subunit AYWB_492 PF02223 Thymidylate kinase AYWB_493 PF01416 tRNA pseudouridine synthase AYWB_494 PF01196 Ribosomal protein L17 AYWB_495 PF01000 RNA polymerase Rpb3/RpoA insert domain AYWB_495 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYWB_495 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYWB_496 PF00411 Ribosomal protein S11 AYWB_497 PF00416 Ribosomal protein S13/S18 AYWB_498 PF00444 Ribosomal protein L36 AYWB_499 PF01176 Translation initiation factor 1A / IF-1 AYWB_500 PF00557 Metallopeptidase family M24 AYWB_501 PF00406 Adenylate kinase AYWB_501 PF05191 Adenylate kinase, active site lid AYWB_502 PF00344 SecY translocase AYWB_503 PF00828 Ribosomal protein L18e/L15 AYWB_504 PF00327 Ribosomal protein L30p/L7e AYWB_505 PF00333 Ribosomal protein S5, N-terminal domain AYWB_505 PF03719 Ribosomal protein S5, C-terminal domain AYWB_506 PF00861 Ribosomal L18p/L5e family AYWB_507 PF00347 Ribosomal protein L6 AYWB_508 PF00410 Ribosomal protein S8 AYWB_509 PF00253 Ribosomal protein S14p/S29e AYWB_510 PF00281 Ribosomal protein L5 AYWB_510 PF00673 ribosomal L5P family C-terminus AYWB_511 PF17136 AYWB_511 AYWB_512 PF00238 Ribosomal protein L14p/L23e AYWB_513 PF00366 Ribosomal protein S17 AYWB_514 PF00831 Ribosomal L29 protein AYWB_515 PF00252 Ribosomal protein L16p/L10e AYWB_516 PF00189 Ribosomal protein S3, C-terminal domain AYWB_516 PF07650 KH domain AYWB_517 PF00237 Ribosomal protein L22p/L17e AYWB_518 PF00203 Ribosomal protein S19 AYWB_519 PF00181 Ribosomal Proteins L2, RNA binding domain AYWB_519 PF03947 Ribosomal Proteins L2, C-terminal domain AYWB_520 PF00276 Ribosomal protein L23 AYWB_521 PF00573 Ribosomal protein L4/L1 family AYWB_522 PF00297 Ribosomal protein L3 AYWB_524 PF00338 Ribosomal protein S10p/S20e AYWB_525 PF01783 Ribosomal L32p protein family AYWB_527 PF00005 ABC transporter AYWB_527 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYWB_528 PF00005 ABC transporter AYWB_529 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYWB_530 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_531 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_532 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AYWB_533 PF00122 E1-E2 ATPase AYWB_533 PF00689 Cation transporting ATPase, C-terminus AYWB_533 PF00690 Cation transporter/ATPase, N-terminus AYWB_533 PF13246 Putative hydrolase of sodium-potassium ATPase alpha subunit AYWB_534 PF02588 AYWB_534 AYWB_535 PF00133 tRNA synthetases class I (I, L, M and V) AYWB_535 PF08264 Anticodon-binding domain of tRNA AYWB_536 PF01926 50S ribosome-binding GTPase AYWB_536 PF06071 Protein of unknown function (DUF933) AYWB_537 PF03193 Protein of unknown function, DUF258 AYWB_538 PF00464 Serine hydroxymethyltransferase AYWB_539 PF02361 Cobalt transport protein AYWB_540 PF00005 ABC transporter AYWB_541 PF00005 ABC transporter AYWB_542 PF01432 Peptidase family M3 AYWB_545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYWB_545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYWB_546 PF00162 Phosphoglycerate kinase AYWB_547 PF01116 Fructose-bisphosphate aldolase class-II AYWB_548 PF08282 haloacid dehalogenase-like hydrolase AYWB_549 PF00121 Triosephosphate isomerase AYWB_550 PF01148 Cytidylyltransferase family AYWB_551 PF01765 Ribosome recycling factor AYWB_552 PF00696 Amino acid kinase family AYWB_553 PF00889 Elongation factor TS AYWB_554 PF00318 Ribosomal protein S2 AYWB_555 PF00692 dUTPase AYWB_556 PF03167 Uracil DNA glycosylase superfamily AYWB_558 PF11178 AYWB_558 AYWB_560 PF00871 Acetokinase family AYWB_561 PF03006 AYWB_561 AYWB_565 PF00271 Helicase conserved C-terminal domain AYWB_565 PF04851 Type III restriction enzyme, res subunit AYWB_566 PF00571 CBS domain AYWB_566 PF01595 AYWB_566 AYWB_566 PF03471 Transporter associated domain AYWB_567 PF01195 Peptidyl-tRNA hydrolase AYWB_569 PF02033 Ribosome-binding factor A AYWB_570 PF00009 Elongation factor Tu GTP binding domain AYWB_570 PF04760 Translation initiation factor IF-2, N-terminal region AYWB_570 PF11987 Translation-initiation factor 2 AYWB_571 PF04296 Protein of unknown function (DUF448) AYWB_572 PF08529 NusA N-terminal domain AYWB_572 PF13184 NusA-like KH domain AYWB_572 PF13509 S1 domain AYWB_573 PF11074 AYWB_573 AYWB_574 PF01668 SmpB protein AYWB_575 PF00719 Inorganic pyrophosphatase AYWB_576 PF00588 SpoU rRNA Methylase family AYWB_577 PF02568 Thiamine biosynthesis protein (ThiI) AYWB_577 PF02926 THUMP domain AYWB_578 PF00485 Phosphoribulokinase / Uridine kinase family AYWB_579 PF01406 tRNA synthetases class I (C) catalytic domain AYWB_580 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYWB_581 PF00380 Ribosomal protein S9/S16 AYWB_582 PF00572 Ribosomal protein L13 AYWB_584 PF01965 DJ-1/PfpI family AYWB_585 PF00312 Ribosomal protein S15 AYWB_586 PF06153 Protein of unknown function (DUF970) AYWB_587 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_588 PF03180 NLPA lipoprotein AYWB_589 PF00005 ABC transporter AYWB_590 PF00849 RNA pseudouridylate synthase AYWB_590 PF01479 S4 domain AYWB_591 PF00004 ATPase family associated with various cellular activities (AAA) AYWB_591 PF01434 Peptidase family M41 AYWB_592 PF01171 PP-loop family AYWB_592 PF11734 TilS substrate C-terminal domain AYWB_593 PF00152 tRNA synthetases class II (D, K and N) AYWB_593 PF01336 OB-fold nucleic acid binding domain AYWB_594 PF03129 Anticodon binding domain AYWB_594 PF13393 Histidyl-tRNA synthetase AYWB_596 PF02824 TGS domain AYWB_596 PF04607 Region found in RelA / SpoT proteins AYWB_596 PF13291 ACT domain AYWB_596 PF13328 HD domain AYWB_597 PF03054 tRNA methyl transferase AYWB_598 PF00795 Carbon-nitrogen hydrolase AYWB_599 PF15438 AYWB_599 AYWB_600 PF00118 TCP-1/cpn60 chaperonin family AYWB_601 PF00166 Chaperonin 10 Kd subunit AYWB_603 PF00830 Ribosomal L28 family AYWB_604 PF01197 Ribosomal protein L31 AYWB_605 PF00265 Thymidine kinase AYWB_606 PF14437 AYWB_606 AYWB_607 PF01743 Poly A polymerase head domain AYWB_607 PF12627 Probable RNA and SrmB- binding site of polymerase A AYWB_607 PF13735 tRNA nucleotidyltransferase domain 2 putative AYWB_608 PF01966 HD domain AYWB_612 PF00665 Integrase core domain AYWB_613 PF13276 AYWB_613 AYWB_614 PF02452 PemK-like protein AYWB_615 PF11178 AYWB_615 AYWB_616 PF08275 DNA primase catalytic core, N-terminal domain AYWB_616 PF13155 Toprim-like AYWB_617 PF03796 DnaB-like helicase C terminal domain AYWB_619 PF00005 ABC transporter AYWB_621 PF00950 AYWB_621 AYWB_622 PF00950 AYWB_622 AYWB_623 PF00005 ABC transporter AYWB_624 PF01297 Periplasmic solute binding protein family AYWB_626 PF01018 GTP1/OBG AYWB_626 PF01926 50S ribosome-binding GTPase AYWB_626 PF09269 Domain of unknown function (DUF1967) AYWB_627 PF01016 Ribosomal L27 protein AYWB_628 PF04327 Protein of unknown function (DUF464) AYWB_629 PF00829 Ribosomal prokaryotic L21 protein AYWB_630 PF00581 Rhodanese-like domain AYWB_630 PF12368 AYWB_630 AYWB_632 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYWB_632 PF02403 Seryl-tRNA synthetase N-terminal domain AYWB_633 PF01649 Ribosomal protein S20 AYWB_634 PF00005 ABC transporter AYWB_635 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYWB_635 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_636 PF11178 AYWB_636 AYWB_640 PF12113 AYWB_640 AYWB_646 PF06130 AYWB_646 AYWB_647 PF01966 HD domain AYWB_648 PF00398 Ribosomal RNA adenine dimethylase AYWB_649 PF04026 SpoVG AYWB_650 PF00122 E1-E2 ATPase AYWB_650 PF00702 haloacid dehalogenase-like hydrolase AYWB_651 PF01554 MatE AYWB_652 PF01795 MraW methylase family AYWB_653 PF01795 MraW methylase family AYWB_654 PF01192 RNA polymerase Rpb6 AYWB_655 PF00625 Guanylate kinase AYWB_656 PF08264 Anticodon-binding domain of tRNA AYWB_656 PF09334 tRNA synthetases class I (M) AYWB_656 PF13603 Leucyl-tRNA synthetase, Domain 2 AYWB_657 PF00550 Phosphopantetheine attachment site AYWB_658 PF05343 M42 glutamyl aminopeptidase AYWB_660 PF00453 Ribosomal protein L20 AYWB_660 PF07498 Rho termination factor, N-terminal domain AYWB_661 PF01632 Ribosomal protein L35 AYWB_662 PF00707 Translation initiation factor IF-3, C-terminal domain AYWB_663 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYWB_663 PF03129 Anticodon binding domain AYWB_663 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYWB_664 PF01368 DHH family AYWB_665 PF01926 50S ribosome-binding GTPase AYWB_665 PF10396 GTP-binding protein TrmE N-terminus AYWB_665 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AYWB_666 PF01368 DHH family AYWB_666 PF02272 DHHA1 domain AYWB_667 PF13416 Bacterial extracellular solute-binding protein AYWB_668 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_669 PF00528 Binding-protein-dependent transport system inner membrane component AYWB_670 PF00005 ABC transporter AYWB_671 PF00152 tRNA synthetases class II (D, K and N) AYWB_671 PF01336 OB-fold nucleic acid binding domain AYWB_pI01 PF00799 Geminivirus Rep catalytic domain AYWB_pI03 PF11178 AYWB_pI03 AYWB_pI05 PF00436 Single-strand binding protein family AYWB_pII01 PF00910 RNA helicase AYWB_pII01 PF01719 Plasmid replication protein AYWB_pII03 PF11178 AYWB_pII03 AYWB_pII04 PF00436 Single-strand binding protein family AYWB_pIII01 PF00799 Geminivirus Rep catalytic domain AYWB_pIII05 PF11178 AYWB_pIII05 AYWB_pIII07 PF00436 Single-strand binding protein family AYWB_pIV01 PF00910 RNA helicase AYWB_pIV01 PF01719 Plasmid replication protein AYWB_pIV03 PF11178 AYWB_pIV03 AYWB_pIV05 PF00436 Single-strand binding protein family