locus-tag class description EM6_0001 PF00750 tRNA synthetases class I (R) EM6_0001 PF05746 DALR anticodon binding domain EM6_0001 PF03485 Arginyl tRNA synthetase N terminal domain EM6_0002 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_0002 PF13192 Thioredoxin domain EM6_0003 PF00578 AhpC/TSA family EM6_0003 PF10417 C-terminal domain of 1-Cys peroxiredoxin EM6_0007 PF04820 Tryptophan halogenase EM6_0009 PF02325 YGGT family EM6_0010 PF02594 Uncharacterised ACR, YggU family COG1872 EM6_0011 PF00180 Isocitrate/isopropylmalate dehydrogenase EM6_0013 PF00694 Aconitase C-terminal domain EM6_0014 PF00330 Aconitase family (aconitate hydratase) EM6_0016 PF08502 LeuA allosteric (dimerisation) domain EM6_0016 PF00682 HMGL-like EM6_0018 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EM6_0018 PF00205 Thiamine pyrophosphate enzyme, central domain EM6_0018 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EM6_0019 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EM6_0019 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EM6_0020 PF00920 Dehydratase family EM6_0021 PF00920 Dehydratase family EM6_0026 PF00474 Sodium:solute symporter family EM6_0027 PF04341 Protein of unknown function, DUF485 EM6_0032 PF00593 TonB dependent receptor EM6_0032 PF07715 TonB-dependent Receptor Plug Domain EM6_0037 PF03900 Porphobilinogen deaminase, C-terminal domain EM6_0037 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EM6_0039 PF00814 Glycoprotease family EM6_0040 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EM6_0040 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EM6_0042 PF02633 Creatinine amidohydrolase EM6_0043 PF00501 AMP-binding enzyme EM6_0043 PF13193 AMP-binding enzyme C-terminal domain EM6_0043 PF16177 Acetyl-coenzyme A synthetase N-terminus EM6_0049 PF04055 Radical SAM superfamily EM6_0053 PF00899 ThiF family EM6_0055 PF00227 Proteasome subunit EM6_0057 PF07724 AAA domain (Cdc48 subfamily) EM6_0057 PF00004 ATPase family associated with various cellular activities (AAA) EM6_0057 PF10431 C-terminal, D2-small domain, of ClpB protein EM6_0059 PF01451 Low molecular weight phosphotyrosine protein phosphatase EM6_0061 PF10576 Iron-sulfur binding domain of endonuclease III EM6_0061 PF00633 Helix-hairpin-helix motif EM6_0061 PF00730 HhH-GPD superfamily base excision DNA repair protein EM6_0063 PF01022 Bacterial regulatory protein, arsR family EM6_0064 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EM6_0067 PF00294 pfkB family carbohydrate kinase EM6_0069 PF08443 RimK-like ATP-grasp domain EM6_0069 PF18030 RimK PreATP-grasp domain EM6_0072 PF02899 Phage integrase, N-terminal SAM-like domain EM6_0072 PF00589 Phage integrase family EM6_0077 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EM6_0077 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EM6_0079 PF07977 FabA-like domain EM6_0080 PF00109 Beta-ketoacyl synthase, N-terminal domain EM6_0080 PF02801 Beta-ketoacyl synthase, C-terminal domain EM6_0086 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EM6_0087 PF04264 YceI-like domain EM6_0088 PF00593 TonB dependent receptor EM6_0088 PF07715 TonB-dependent Receptor Plug Domain EM6_0089 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EM6_0091 PF02887 Pyruvate kinase, alpha/beta domain EM6_0091 PF00224 Pyruvate kinase, barrel domain EM6_0094 PF07690 Major Facilitator Superfamily EM6_0095 PF00480 ROK family EM6_0096 PF00135 Carboxylesterase family EM6_0098 PF00480 ROK family EM6_0101 PF14403 Circularly permuted ATP-grasp type 2 EM6_0101 PF04168 A predicted alpha-helical domain with a conserved ER motif. EM6_0102 PF14403 Circularly permuted ATP-grasp type 2 EM6_0110 PF02082 Transcriptional regulator EM6_0112 PF10017 Histidine-specific methyltransferase, SAM-dependent EM6_0114 PF00072 Response regulator receiver domain EM6_0117 PF00719 Inorganic pyrophosphatase EM6_0119 PF07411 Domain of unknown function (DUF1508) EM6_0121 PF13847 Methyltransferase domain EM6_0122 PF02219 Methylenetetrahydrofolate reductase EM6_0124 PF02607 B12 binding domain EM6_0124 PF02310 B12 binding domain EM6_0124 PF02574 Homocysteine S-methyltransferase EM6_0124 PF00809 Pterin binding enzyme EM6_0124 PF02965 Vitamin B12 dependent methionine synthase, activation domain EM6_0125 PF01820 D-ala D-ala ligase N-terminus EM6_0125 PF07478 D-ala D-ala ligase C-terminus EM6_0127 PF02310 B12 binding domain EM6_0127 PF02607 B12 binding domain EM6_0127 PF02965 Vitamin B12 dependent methionine synthase, activation domain EM6_0127 PF00809 Pterin binding enzyme EM6_0127 PF02574 Homocysteine S-methyltransferase EM6_0128 PF16123 Hydroxyacylglutathione hydrolase C-terminus EM6_0128 PF00753 Metallo-beta-lactamase superfamily EM6_0129 PF08241 Methyltransferase domain EM6_0131 PF01180 Dihydroorotate dehydrogenase EM6_0133 PF02107 Flagellar L-ring protein EM6_0134 PF13144 Chaperone for flagella basal body P-ring formation EM6_0135 PF00460 Flagella basal body rod protein EM6_0135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EM6_0136 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EM6_0136 PF00460 Flagella basal body rod protein EM6_0139 PF00005 ABC transporter EM6_0141 PF13533 Biotin-lipoyl like EM6_0143 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EM6_0143 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EM6_0144 PF02910 Fumarate reductase flavoprotein C-term EM6_0144 PF00890 FAD binding domain EM6_0145 PF02445 Quinolinate synthetase A protein EM6_0146 PF00210 Ferritin-like domain EM6_0148 PF00472 RF-1 domain EM6_0150 PF00953 Glycosyl transferase family 4 EM6_0155 PF09827 CRISPR associated protein Cas2 EM6_0159 PF00691 OmpA family EM6_0160 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase EM6_0163 PF04371 Porphyromonas-type peptidyl-arginine deiminase EM6_0164 PF00795 Carbon-nitrogen hydrolase EM6_0165 PF01979 Amidohydrolase family EM6_0166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_0166 PF00672 HAMP domain EM6_0166 PF02743 Cache domain EM6_0169 PF12169 DNA polymerase III subunits gamma and tau domain III EM6_0169 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EM6_0169 PF12170 DNA polymerase III tau subunit V interacting with alpha EM6_0170 PF02575 YbaB/EbfC DNA-binding family EM6_0171 PF13662 Toprim domain EM6_0171 PF02132 RecR protein EM6_0173 PF02646 RmuC family EM6_0176 PF01327 Polypeptide deformylase EM6_0177 PF00551 Formyl transferase EM6_0177 PF02911 Formyl transferase, C-terminal domain EM6_0178 PF01416 tRNA pseudouridine synthase EM6_0179 PF07687 Peptidase dimerisation domain EM6_0179 PF01546 Peptidase family M20/M25/M40 EM6_0180 PF05977 Transmembrane secretion effector EM6_0181 PF08460 Bacterial SH3 domain EM6_0181 PF01551 Peptidase family M23 EM6_0185 PF01757 Acyltransferase family EM6_0187 PF01544 CorA-like Mg2+ transporter protein EM6_0191 PF07715 TonB-dependent Receptor Plug Domain EM6_0191 PF00593 TonB dependent receptor EM6_0195 PF04551 GcpE protein EM6_0196 PF00563 EAL domain EM6_0196 PF00990 Diguanylate cyclase, GGDEF domain EM6_0196 PF08447 PAS fold EM6_0196 PF08448 PAS fold EM6_0198 PF03462 PCRF domain EM6_0198 PF00472 RF-1 domain EM6_0201 PF00300 Histidine phosphatase superfamily (branch 1) EM6_0202 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EM6_0202 PF01872 RibD C-terminal domain EM6_0204 PF01112 Asparaginase EM6_0205 PF00005 ABC transporter EM6_0205 PF00664 ABC transporter transmembrane region EM6_0206 PF00664 ABC transporter transmembrane region EM6_0206 PF00005 ABC transporter EM6_0207 PF01654 Cytochrome bd terminal oxidase subunit I EM6_0208 PF02322 Cytochrome bd terminal oxidase subunit II EM6_0210 PF02719 Polysaccharide biosynthesis protein EM6_0212 PF02391 MoaE protein EM6_0213 PF01967 MoaC family EM6_0216 PF07722 Peptidase C26 EM6_0218 PF00202 Aminotransferase class-III EM6_0222 PF14489 QueF-like protein EM6_0225 PF00293 NUDIX domain EM6_0226 PF06426 Serine acetyltransferase, N-terminal EM6_0226 PF00132 Bacterial transferase hexapeptide (six repeats) EM6_0230 PF01926 50S ribosome-binding GTPase EM6_0231 PF14849 YidC periplasmic domain EM6_0231 PF02096 60Kd inner membrane protein EM6_0232 PF00825 Ribonuclease P EM6_0233 PF00468 Ribosomal protein L34 EM6_0234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0234 PF00512 His Kinase A (phospho-acceptor) domain EM6_0234 PF00672 HAMP domain EM6_0235 PF00561 alpha/beta hydrolase fold EM6_0237 PF03147 Ferredoxin-fold anticodon binding domain EM6_0237 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EM6_0237 PF03484 tRNA synthetase B5 domain EM6_0237 PF01588 Putative tRNA binding domain EM6_0237 PF03483 B3/4 domain EM6_0238 PF01409 tRNA synthetases class II core domain (F) EM6_0238 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EM6_0239 PF04185 Phosphoesterase family EM6_0239 PF05506 Domain of unknown function (DUF756) EM6_0240 PF00453 Ribosomal protein L20 EM6_0241 PF01632 Ribosomal protein L35 EM6_0243 PF01098 Cell cycle protein EM6_0244 PF04101 Glycosyltransferase family 28 C-terminal domain EM6_0244 PF03033 Glycosyltransferase family 28 N-terminal domain EM6_0248 PF01225 Mur ligase family, catalytic domain EM6_0248 PF08245 Mur ligase middle domain EM6_0248 PF02875 Mur ligase family, glutamate ligase domain EM6_0249 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EM6_0249 PF01565 FAD binding domain EM6_0250 PF00809 Pterin binding enzyme EM6_0254 PF08543 Phosphomethylpyrimidine kinase EM6_0257 PF00266 Aminotransferase class-V EM6_0262 PF00709 Adenylosuccinate synthetase EM6_0266 PF00140 Sigma-70 factor, region 1.2 EM6_0266 PF04542 Sigma-70 region 2 EM6_0266 PF04545 Sigma-70, region 4 EM6_0267 PF00849 RNA pseudouridylate synthase EM6_0268 PF02472 Biopolymer transport protein ExbD/TolR EM6_0269 PF01227 GTP cyclohydrolase I EM6_0270 PF09190 DALR domain EM6_0270 PF01406 tRNA synthetases class I (C) catalytic domain EM6_0275 PF01809 Putative membrane protein insertion efficiency factor EM6_0276 PF03129 Anticodon binding domain EM6_0276 PF02824 TGS domain EM6_0276 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EM6_0276 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EM6_0279 PF07859 alpha/beta hydrolase fold EM6_0279 PF13472 GDSL-like Lipase/Acylhydrolase family EM6_0283 PF13361 UvrD-like helicase C-terminal domain EM6_0283 PF00580 UvrD/REP helicase N-terminal domain EM6_0284 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EM6_0288 PF12282 Signal transduction histidine kinase EM6_0288 PF07568 Histidine kinase EM6_0288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0291 PF13667 ThiC-associated domain EM6_0291 PF01964 Radical SAM ThiC family EM6_0296 PF13426 PAS domain EM6_0296 PF08447 PAS fold EM6_0296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_0298 PF13340 Putative transposase of IS4/5 family (DUF4096) EM6_0299 PF12729 Four helix bundle sensory module for signal transduction EM6_0299 PF00672 HAMP domain EM6_0299 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_0300 PF01266 FAD dependent oxidoreductase EM6_0301 PF00120 Glutamine synthetase, catalytic domain EM6_0301 PF03951 Glutamine synthetase, beta-Grasp domain EM6_0303 PF00588 SpoU rRNA Methylase family EM6_0304 PF16499 Alpha galactosidase A EM6_0304 PF17801 Alpha galactosidase C-terminal beta sandwich domain EM6_0306 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EM6_0306 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EM6_0308 PF00285 Citrate synthase, C-terminal domain EM6_0309 PF03972 MmgE/PrpD family EM6_0311 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EM6_0311 PF00072 Response regulator receiver domain EM6_0311 PF01627 Hpt domain EM6_0311 PF00512 His Kinase A (phospho-acceptor) domain EM6_0311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0311 PF00672 HAMP domain EM6_0316 PF07691 PA14 domain EM6_0316 PF01915 Glycosyl hydrolase family 3 C-terminal domain EM6_0316 PF14310 Fibronectin type III-like domain EM6_0316 PF00933 Glycosyl hydrolase family 3 N terminal domain EM6_0317 PF03741 Integral membrane protein TerC family EM6_0318 PF01812 5-formyltetrahydrofolate cyclo-ligase family EM6_0319 PF13277 YmdB-like protein EM6_0320 PF01709 Transcriptional regulator EM6_0323 PF04085 rod shape-determining protein MreC EM6_0325 PF03717 Penicillin-binding Protein dimerisation domain EM6_0325 PF00905 Penicillin binding protein transpeptidase domain EM6_0326 PF01098 Cell cycle protein EM6_0329 PF02146 Sir2 family EM6_0332 PF00672 HAMP domain EM6_0332 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_0332 PF16591 Helical bimodular sensor domain EM6_0335 PF07690 Major Facilitator Superfamily EM6_0337 PF00817 impB/mucB/samB family EM6_0337 PF11799 impB/mucB/samB family C-terminal domain EM6_0337 PF11798 IMS family HHH motif EM6_0342 PF00534 Glycosyl transferases group 1 EM6_0342 PF13439 Glycosyltransferase Family 4 EM6_0343 PF00707 Translation initiation factor IF-3, C-terminal domain EM6_0343 PF05198 Translation initiation factor IF-3, N-terminal domain EM6_0345 PF17871 AAA lid domain EM6_0345 PF10431 C-terminal, D2-small domain, of ClpB protein EM6_0345 PF07724 AAA domain (Cdc48 subfamily) EM6_0345 PF00004 ATPase family associated with various cellular activities (AAA) EM6_0345 PF02861 Clp amino terminal domain, pathogenicity island component EM6_0346 PF05175 Methyltransferase small domain EM6_0347 PF00348 Polyprenyl synthetase EM6_0350 PF08459 UvrC Helix-hairpin-helix N-terminal EM6_0350 PF02151 UvrB/uvrC motif EM6_0350 PF01541 GIY-YIG catalytic domain EM6_0352 PF00593 TonB dependent receptor EM6_0352 PF07715 TonB-dependent Receptor Plug Domain EM6_0355 PF03922 OmpW family EM6_0356 PF00933 Glycosyl hydrolase family 3 N terminal domain EM6_0356 PF14310 Fibronectin type III-like domain EM6_0356 PF01915 Glycosyl hydrolase family 3 C-terminal domain EM6_0359 PF00210 Ferritin-like domain EM6_0362 PF00459 Inositol monophosphatase family EM6_0363 PF01381 Helix-turn-helix EM6_0364 PF00675 Insulinase (Peptidase family M16) EM6_0364 PF05193 Peptidase M16 inactive domain EM6_0369 PF01040 UbiA prenyltransferase family EM6_0374 PF11741 AMIN domain EM6_0374 PF00263 Bacterial type II and III secretion system protein EM6_0374 PF03958 Bacterial type II/III secretion system short domain EM6_0374 PF07660 Secretin and TonB N terminus short domain EM6_0379 PF03741 Integral membrane protein TerC family EM6_0381 PF01027 Inhibitor of apoptosis-promoting Bax1 EM6_0383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0383 PF13492 GAF domain EM6_0383 PF13493 Domain of unknown function (DUF4118) EM6_0383 PF02702 Osmosensitive K+ channel His kinase sensor domain EM6_0383 PF00512 His Kinase A (phospho-acceptor) domain EM6_0384 PF00072 Response regulator receiver domain EM6_0384 PF00486 Transcriptional regulatory protein, C terminal EM6_0388 PF00571 CBS domain EM6_0388 PF01769 Divalent cation transporter EM6_0388 PF03448 MgtE intracellular N domain EM6_0390 PF00430 ATP synthase B/B' CF(0) EM6_0392 PF00137 ATP synthase subunit C EM6_0393 PF00119 ATP synthase A chain EM6_0395 PF02463 RecF/RecN/SMC N terminal domain EM6_0398 PF13462 Thioredoxin EM6_0400 PF00730 HhH-GPD superfamily base excision DNA repair protein EM6_0400 PF14815 NUDIX domain EM6_0402 PF01555 DNA methylase EM6_0402 PF18755 Restriction Enzyme Adenine Methylase Associated EM6_0403 PF01351 Ribonuclease HII EM6_0404 PF05656 Protein of unknown function (DUF805) EM6_0405 PF01571 Aminomethyltransferase folate-binding domain EM6_0407 PF01979 Amidohydrolase family EM6_0409 PF00378 Enoyl-CoA hydratase/isomerase EM6_0412 PF01743 Poly A polymerase head domain EM6_0412 PF12626 Polymerase A arginine-rich C-terminus EM6_0412 PF12627 Probable RNA and SrmB- binding site of polymerase A EM6_0415 PF01218 Coproporphyrinogen III oxidase EM6_0416 PF00588 SpoU rRNA Methylase family EM6_0417 PF00355 Rieske [2Fe-2S] domain EM6_0417 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EM6_0418 PF00032 Cytochrome b(C-terminal)/b6/petD EM6_0418 PF00033 Cytochrome b/b6/petB EM6_0419 PF02167 Cytochrome C1 family EM6_0419 PF00033 Cytochrome b/b6/petB EM6_0419 PF00032 Cytochrome b(C-terminal)/b6/petD EM6_0420 PF01966 HD domain EM6_0421 PF06071 Protein of unknown function (DUF933) EM6_0421 PF01926 50S ribosome-binding GTPase EM6_0422 PF00144 Beta-lactamase EM6_0423 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase EM6_0423 PF03033 Glycosyltransferase family 28 N-terminal domain EM6_0425 PF01386 Ribosomal L25p family EM6_0425 PF14693 Ribosomal protein TL5, C-terminal domain EM6_0427 PF14572 Phosphoribosyl synthetase-associated domain EM6_0427 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EM6_0431 PF01790 Prolipoprotein diacylglyceryl transferase EM6_0434 PF03807 NADP oxidoreductase coenzyme F420-dependent EM6_0434 PF14748 Pyrroline-5-carboxylate reductase dimerisation EM6_0435 PF02333 Phytase EM6_0439 PF01047 MarR family EM6_0440 PF02566 OsmC-like protein EM6_0441 PF00248 Aldo/keto reductase family EM6_0443 PF01053 Cys/Met metabolism PLP-dependent enzyme EM6_0444 PF00561 alpha/beta hydrolase fold EM6_0446 PF00106 short chain dehydrogenase EM6_0448 PF01842 ACT domain EM6_0448 PF03447 Homoserine dehydrogenase, NAD binding domain EM6_0448 PF00742 Homoserine dehydrogenase EM6_0450 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EM6_0453 PF01906 Putative heavy-metal-binding EM6_0458 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EM6_0460 PF06793 Uncharacterised protein family (UPF0262) EM6_0462 PF01176 Translation initiation factor 1A / IF-1 EM6_0463 PF02545 Maf-like protein EM6_0465 PF03884 DNA gyrase inhibitor YacG EM6_0479 PF01381 Helix-turn-helix EM6_0500 PF01551 Peptidase family M23 EM6_0500 PF10145 Phage-related minor tail protein EM6_0500 PF01464 Transglycosylase SLT domain EM6_0508 PF13356 Arm DNA-binding domain EM6_0508 PF00589 Phage integrase family EM6_0510 PF00270 DEAD/DEAH box helicase EM6_0510 PF00271 Helicase conserved C-terminal domain EM6_0514 PF07057 DNA helicase TraI EM6_0514 PF18340 DNA relaxase TraI 2B/2B-like domain EM6_0514 PF08751 TrwC relaxase EM6_0514 PF18272 single-stranded DNA binding TraI N-terminal subdomain EM6_0515 PF02534 Type IV secretory system Conjugative DNA transfer EM6_0518 PF00589 Phage integrase family EM6_0518 PF13356 Arm DNA-binding domain EM6_0519 PF05284 Protein of unknown function (DUF736) EM6_0521 PF00701 Dihydrodipicolinate synthetase family EM6_0522 PF07690 Major Facilitator Superfamily EM6_0524 PF03466 LysR substrate binding domain EM6_0524 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_0525 PF07715 TonB-dependent Receptor Plug Domain EM6_0525 PF00593 TonB dependent receptor EM6_0526 PF01869 BadF/BadG/BcrA/BcrD ATPase family EM6_0527 PF03932 CutC family EM6_0531 PF14310 Fibronectin type III-like domain EM6_0531 PF00933 Glycosyl hydrolase family 3 N terminal domain EM6_0531 PF07691 PA14 domain EM6_0531 PF01915 Glycosyl hydrolase family 3 C-terminal domain EM6_0532 PF01301 Glycosyl hydrolases family 35 EM6_0534 PF07971 Glycosyl hydrolase family 92 EM6_0534 PF17678 Glycosyl hydrolase family 92 N-terminal domain EM6_0539 PF07715 TonB-dependent Receptor Plug Domain EM6_0539 PF00593 TonB dependent receptor EM6_0540 PF00005 ABC transporter EM6_0543 PF01476 LysM domain EM6_0543 PF01551 Peptidase family M23 EM6_0544 PF02699 Preprotein translocase subunit EM6_0545 PF07549 SecD/SecF GG Motif EM6_0545 PF02355 Protein export membrane protein EM6_0548 PF01134 Glucose inhibited division protein A EM6_0551 PF00194 Eukaryotic-type carbonic anhydrase EM6_0552 PF17755 UvrA DNA-binding domain EM6_0552 PF17760 UvrA interaction domain EM6_0557 PF02119 Flagellar P-ring protein EM6_0558 PF10768 Class II flagellar assembly regulator EM6_0559 PF01258 Prokaryotic dksA/traR C4-type zinc finger EM6_0560 PF03641 Possible lysine decarboxylase EM6_0562 PF02617 ATP-dependent Clp protease adaptor protein ClpS EM6_0563 PF02861 Clp amino terminal domain, pathogenicity island component EM6_0563 PF17871 AAA lid domain EM6_0563 PF07724 AAA domain (Cdc48 subfamily) EM6_0563 PF10431 C-terminal, D2-small domain, of ClpB protein EM6_0563 PF00004 ATPase family associated with various cellular activities (AAA) EM6_0565 PF01343 Peptidase family S49 EM6_0571 PF00005 ABC transporter EM6_0572 PF07683 Cobalamin synthesis protein cobW C-terminal domain EM6_0572 PF02492 CobW/HypB/UreG, nucleotide-binding domain EM6_0574 PF09423 PhoD-like phosphatase EM6_0574 PF16655 PhoD-like phosphatase, N-terminal domain EM6_0579 PF01022 Bacterial regulatory protein, arsR family EM6_0580 PF00873 AcrB/AcrD/AcrF family EM6_0582 PF11127 Protein of unknown function (DUF2892) EM6_0582 PF00581 Rhodanese-like domain EM6_0584 PF02627 Carboxymuconolactone decarboxylase family EM6_0585 PF16363 GDP-mannose 4,6 dehydratase EM6_0586 PF02397 Bacterial sugar transferase EM6_0587 PF01975 Survival protein SurE EM6_0590 PF01266 FAD dependent oxidoreductase EM6_0591 PF00842 Alanine racemase, C-terminal domain EM6_0591 PF01168 Alanine racemase, N-terminal domain EM6_0592 PF01037 Lrp/AsnC ligand binding domain EM6_0594 PF02321 Outer membrane efflux protein EM6_0595 PF00873 AcrB/AcrD/AcrF family EM6_0596 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EM6_0597 PF00440 Bacterial regulatory proteins, tetR family EM6_0598 PF04055 Radical SAM superfamily EM6_0599 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EM6_0599 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EM6_0607 PF07715 TonB-dependent Receptor Plug Domain EM6_0607 PF00593 TonB dependent receptor EM6_0608 PF18331 PKHD-type hydroxylase C-terminal domain EM6_0608 PF13640 2OG-Fe(II) oxygenase superfamily EM6_0609 PF01070 FMN-dependent dehydrogenase EM6_0612 PF02424 ApbE family EM6_0613 PF00175 Oxidoreductase NAD-binding domain EM6_0613 PF00258 Flavodoxin EM6_0613 PF00667 FAD binding domain EM6_0615 PF04244 Deoxyribodipyrimidine photo-lyase-related protein EM6_0617 PF00155 Aminotransferase class I and II EM6_0618 PF00171 Aldehyde dehydrogenase family EM6_0624 PF07859 alpha/beta hydrolase fold EM6_0624 PF13472 GDSL-like Lipase/Acylhydrolase family EM6_0626 PF14850 DNA-binding domain of Proline dehydrogenase EM6_0626 PF01619 Proline dehydrogenase EM6_0626 PF00171 Aldehyde dehydrogenase family EM6_0626 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EM6_0627 PF01037 Lrp/AsnC ligand binding domain EM6_0628 PF06165 Glycosyltransferase family 36 EM6_0628 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain EM6_0632 PF00072 Response regulator receiver domain EM6_0632 PF01627 Hpt domain EM6_0632 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EM6_0632 PF00672 HAMP domain EM6_0632 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0632 PF00512 His Kinase A (phospho-acceptor) domain EM6_0634 PF01522 Polysaccharide deacetylase EM6_0636 PF00294 pfkB family carbohydrate kinase EM6_0638 PF01156 Inosine-uridine preferring nucleoside hydrolase EM6_0639 PF06379 L-rhamnose-proton symport protein (RhaT) EM6_0641 PF01546 Peptidase family M20/M25/M40 EM6_0641 PF07687 Peptidase dimerisation domain EM6_0642 PF00291 Pyridoxal-phosphate dependent enzyme EM6_0645 PF00437 Type II/IV secretion system protein EM6_0646 PF03743 Bacterial conjugation TrbI-like protein EM6_0649 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EM6_0652 PF01464 Transglycosylase SLT domain EM6_0655 PF00483 Nucleotidyl transferase EM6_0656 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EM6_0656 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EM6_0656 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EM6_0656 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EM6_0660 PF00394 Multicopper oxidase EM6_0660 PF07731 Multicopper oxidase EM6_0660 PF07732 Multicopper oxidase EM6_0661 PF05275 Copper resistance protein B precursor (CopB) EM6_0663 PF00356 Bacterial regulatory proteins, lacI family EM6_0664 PF00083 Sugar (and other) transporter EM6_0664 PF07690 Major Facilitator Superfamily EM6_0666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0666 PF00072 Response regulator receiver domain EM6_0667 PF00669 Bacterial flagellin N-terminal helical region EM6_0667 PF00700 Bacterial flagellin C-terminal helical region EM6_0669 PF02403 Seryl-tRNA synthetase N-terminal domain EM6_0669 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EM6_0670 PF00902 Sec-independent protein translocase protein (TatC) EM6_0671 PF02416 mttA/Hcf106 family EM6_0672 PF02416 mttA/Hcf106 family EM6_0673 PF04079 Segregation and condensation complex subunit ScpB EM6_0674 PF02616 Segregation and condensation protein ScpA EM6_0675 PF00933 Glycosyl hydrolase family 3 N terminal domain EM6_0676 PF05036 Sporulation related domain EM6_0679 PF04679 ATP dependent DNA ligase C terminal region EM6_0679 PF01068 ATP dependent DNA ligase domain EM6_0679 PF04675 DNA ligase N terminus EM6_0680 PF04679 ATP dependent DNA ligase C terminal region EM6_0680 PF04675 DNA ligase N terminus EM6_0680 PF01068 ATP dependent DNA ligase domain EM6_0681 PF00271 Helicase conserved C-terminal domain EM6_0681 PF08494 DEAD/H associated EM6_0681 PF00270 DEAD/DEAH box helicase EM6_0683 PF08212 Lipocalin-like domain EM6_0684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_0684 PF03466 LysR substrate binding domain EM6_0686 PF00356 Bacterial regulatory proteins, lacI family EM6_0687 PF07690 Major Facilitator Superfamily EM6_0689 PF00128 Alpha amylase, catalytic domain EM6_0690 PF00480 ROK family EM6_0691 PF00072 Response regulator receiver domain EM6_0691 PF13188 PAS domain EM6_0691 PF08448 PAS fold EM6_0691 PF00512 His Kinase A (phospho-acceptor) domain EM6_0691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0692 PF07745 Glycosyl hydrolase family 53 EM6_0696 PF16355 Domain of unknown function (DUF4982) EM6_0696 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 EM6_0696 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_0696 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_0696 PF00703 Glycosyl hydrolases family 2 EM6_0697 PF16353 Domain of unknown function(DUF4981) EM6_0697 PF02929 Beta galactosidase small chain EM6_0697 PF00703 Glycosyl hydrolases family 2 EM6_0697 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_0697 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_0700 PF03783 Curli production assembly/transport component CsgG EM6_0701 PF03783 Curli production assembly/transport component CsgG EM6_0702 PF01584 CheW-like domain EM6_0702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0702 PF01627 Hpt domain EM6_0702 PF00072 Response regulator receiver domain EM6_0704 PF00672 HAMP domain EM6_0704 PF00072 Response regulator receiver domain EM6_0704 PF01627 Hpt domain EM6_0704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0704 PF00512 His Kinase A (phospho-acceptor) domain EM6_0704 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EM6_0706 PF14310 Fibronectin type III-like domain EM6_0706 PF01915 Glycosyl hydrolase family 3 C-terminal domain EM6_0706 PF00933 Glycosyl hydrolase family 3 N terminal domain EM6_0711 PF00356 Bacterial regulatory proteins, lacI family EM6_0712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0712 PF13426 PAS domain EM6_0712 PF00072 Response regulator receiver domain EM6_0716 PF01882 Protein of unknown function DUF58 EM6_0717 PF07726 ATPase family associated with various cellular activities (AAA) EM6_0717 PF17863 AAA lid domain EM6_0721 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EM6_0727 PF00166 Chaperonin 10 Kd subunit EM6_0728 PF00118 TCP-1/cpn60 chaperonin family EM6_0731 PF03099 Biotin/lipoate A/B protein ligase family EM6_0732 PF05656 Protein of unknown function (DUF805) EM6_0735 PF00849 RNA pseudouridylate synthase EM6_0735 PF01479 S4 domain EM6_0738 PF00004 ATPase family associated with various cellular activities (AAA) EM6_0738 PF12002 MgsA AAA+ ATPase C terminal EM6_0738 PF16193 AAA C-terminal domain EM6_0742 PF00749 tRNA synthetases class I (E and Q), catalytic domain EM6_0743 PF00313 'Cold-shock' DNA-binding domain EM6_0745 PF03806 AbgT putative transporter family EM6_0748 PF02779 Transketolase, pyrimidine binding domain EM6_0748 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EM6_0748 PF02780 Transketolase, C-terminal domain EM6_0750 PF00348 Polyprenyl synthetase EM6_0751 PF02609 Exonuclease VII small subunit EM6_0756 PF04545 Sigma-70, region 4 EM6_0756 PF04542 Sigma-70 region 2 EM6_0757 PF01593 Flavin containing amine oxidoreductase EM6_0757 PF02027 RolB/RolC glucosidase family EM6_0759 PF01055 Glycosyl hydrolases family 31 EM6_0759 PF17137 Domain of unknown function (DUF5110) EM6_0759 PF16338 Domain of unknown function (DUF4968) EM6_0761 PF00392 Bacterial regulatory proteins, gntR family EM6_0761 PF07729 FCD domain EM6_0762 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0762 PF08448 PAS fold EM6_0762 PF13188 PAS domain EM6_0762 PF00072 Response regulator receiver domain EM6_0762 PF00512 His Kinase A (phospho-acceptor) domain EM6_0763 PF01312 FlhB HrpN YscU SpaS Family EM6_0764 PF01311 Bacterial export proteins, family 1 EM6_0765 PF01313 Bacterial export proteins, family 3 EM6_0768 PF02049 Flagellar hook-basal body complex protein FliE EM6_0769 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EM6_0771 PF04347 Flagellar biosynthesis protein, FliO EM6_0772 PF00813 FliP family EM6_0775 PF01156 Inosine-uridine preferring nucleoside hydrolase EM6_0782 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EM6_0782 PF02154 Flagellar motor switch protein FliM EM6_0783 PF03748 Flagellar basal body-associated protein FliL EM6_0784 PF01066 CDP-alcohol phosphatidyltransferase EM6_0785 PF00672 HAMP domain EM6_0785 PF16591 Helical bimodular sensor domain EM6_0785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_0787 PF00005 ABC transporter EM6_0789 PF00440 Bacterial regulatory proteins, tetR family EM6_0789 PF08362 YcdC-like protein, C-terminal region EM6_0792 PF12697 Alpha/beta hydrolase family EM6_0793 PF04055 Radical SAM superfamily EM6_0794 PF00892 EamA-like transporter family EM6_0795 PF00199 Catalase EM6_0795 PF06628 Catalase-related immune-responsive EM6_0797 PF03831 PhnA domain EM6_0797 PF08274 PhnA Zinc-Ribbon EM6_0799 PF01494 FAD binding domain EM6_0800 PF01773 Na+ dependent nucleoside transporter N-terminus EM6_0800 PF07662 Na+ dependent nucleoside transporter C-terminus EM6_0802 PF00072 Response regulator receiver domain EM6_0802 PF00196 Bacterial regulatory proteins, luxR family EM6_0803 PF00072 Response regulator receiver domain EM6_0803 PF00672 HAMP domain EM6_0803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0803 PF00512 His Kinase A (phospho-acceptor) domain EM6_0803 PF01627 Hpt domain EM6_0804 PF00593 TonB dependent receptor EM6_0804 PF07715 TonB-dependent Receptor Plug Domain EM6_0806 PF07690 Major Facilitator Superfamily EM6_0807 PF00529 HlyD membrane-fusion protein of T1SS EM6_0807 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EM6_0808 PF02321 Outer membrane efflux protein EM6_0809 PF17922 Tetracyclin repressor-like, C-terminal domain EM6_0809 PF00440 Bacterial regulatory proteins, tetR family EM6_0813 PF00072 Response regulator receiver domain EM6_0813 PF02954 Bacterial regulatory protein, Fis family EM6_0814 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0814 PF00512 His Kinase A (phospho-acceptor) domain EM6_0817 PF00034 Cytochrome c EM6_0817 PF03150 Di-haem cytochrome c peroxidase EM6_0821 PF07715 TonB-dependent Receptor Plug Domain EM6_0821 PF00593 TonB dependent receptor EM6_0822 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EM6_0822 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EM6_0824 PF01053 Cys/Met metabolism PLP-dependent enzyme EM6_0827 PF01548 Transposase EM6_0827 PF02371 Transposase IS116/IS110/IS902 family EM6_0830 PF13356 Arm DNA-binding domain EM6_0830 PF00589 Phage integrase family EM6_0831 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain EM6_0831 PF04616 Glycosyl hydrolases family 43 EM6_0837 PF03743 Bacterial conjugation TrbI-like protein EM6_0838 PF02534 Type IV secretory system Conjugative DNA transfer EM6_0841 PF00216 Bacterial DNA-binding protein EM6_0842 PF05443 ROS/MUCR transcriptional regulator protein EM6_0850 PF05284 Protein of unknown function (DUF736) EM6_0851 PF07532 Bacterial Ig-like domain (group 4) EM6_0852 PF04616 Glycosyl hydrolases family 43 EM6_0854 PF04616 Glycosyl hydrolases family 43 EM6_0855 PF00701 Dihydrodipicolinate synthetase family EM6_0856 PF14508 Glycosyl-hydrolase 97 N-terminal EM6_0856 PF10566 Glycoside hydrolase 97 EM6_0856 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation EM6_0859 PF00326 Prolyl oligopeptidase family EM6_0859 PF07676 WD40-like Beta Propeller Repeat EM6_0861 PF04820 Tryptophan halogenase EM6_0865 PF00072 Response regulator receiver domain EM6_0865 PF00196 Bacterial regulatory proteins, luxR family EM6_0867 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_0871 PF02779 Transketolase, pyrimidine binding domain EM6_0871 PF02780 Transketolase, C-terminal domain EM6_0871 PF00456 Transketolase, thiamine diphosphate binding domain EM6_0872 PF00313 'Cold-shock' DNA-binding domain EM6_0873 PF08468 Methyltransferase small domain N-terminal EM6_0873 PF05175 Methyltransferase small domain EM6_0874 PF01479 S4 domain EM6_0874 PF00849 RNA pseudouridylate synthase EM6_0876 PF00072 Response regulator receiver domain EM6_0876 PF00486 Transcriptional regulatory protein, C terminal EM6_0877 PF00512 His Kinase A (phospho-acceptor) domain EM6_0877 PF00672 HAMP domain EM6_0877 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0878 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EM6_0878 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EM6_0879 PF00162 Phosphoglycerate kinase EM6_0880 PF01116 Fructose-bisphosphate aldolase class-II EM6_0882 PF00011 Hsp20/alpha crystallin family EM6_0883 PF08279 HTH domain EM6_0883 PF13280 WYL domain EM6_0884 PF01053 Cys/Met metabolism PLP-dependent enzyme EM6_0886 PF00528 Binding-protein-dependent transport system inner membrane component EM6_0887 PF00528 Binding-protein-dependent transport system inner membrane component EM6_0888 PF12857 TOBE-like domain EM6_0888 PF00005 ABC transporter EM6_0890 PF00593 TonB dependent receptor EM6_0890 PF07715 TonB-dependent Receptor Plug Domain EM6_0891 PF05195 Aminopeptidase P, N-terminal domain EM6_0891 PF00557 Metallopeptidase family M24 EM6_0893 PF01653 NAD-dependent DNA ligase adenylation domain EM6_0893 PF12826 Helix-hairpin-helix motif EM6_0893 PF00533 BRCA1 C Terminus (BRCT) domain EM6_0893 PF03120 NAD-dependent DNA ligase OB-fold domain EM6_0894 PF02463 RecF/RecN/SMC N terminal domain EM6_0895 PF13525 Outer membrane lipoprotein EM6_0896 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EM6_0897 PF00091 Tubulin/FtsZ family, GTPase domain EM6_0897 PF12327 FtsZ family, C-terminal domain EM6_0899 PF02491 SHS2 domain inserted in FTSA EM6_0900 PF03799 Cell division protein FtsQ EM6_0900 PF08478 POTRA domain, FtsQ-type EM6_0904 PF01699 Sodium/calcium exchanger protein EM6_0906 PF00037 4Fe-4S binding domain EM6_0906 PF11953 Domain of unknown function (DUF3470) EM6_0908 PF00230 Major intrinsic protein EM6_0909 PF03960 ArsC family EM6_0910 PF03458 UPF0126 domain EM6_0912 PF00830 Ribosomal L28 family EM6_0915 PF11775 Cobalamin biosynthesis protein CobT VWA domain EM6_0915 PF06213 Cobalamin biosynthesis protein CobT EM6_0916 PF07728 AAA domain (dynein-related subfamily) EM6_0916 PF08406 CbbQ/NirQ/NorQ C-terminal EM6_0916 PF12556 Cobaltochelatase CobS subunit N terminal EM6_0918 PF00226 DnaJ domain EM6_0922 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EM6_0922 PF00378 Enoyl-CoA hydratase/isomerase EM6_0922 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EM6_0923 PF02803 Thiolase, C-terminal domain EM6_0923 PF00108 Thiolase, N-terminal domain EM6_0925 PF05035 2-keto-3-deoxy-galactonokinase EM6_0926 PF01081 KDPG and KHG aldolase EM6_0927 PF01638 HxlR-like helix-turn-helix EM6_0928 PF05368 NmrA-like family EM6_0930 PF00293 NUDIX domain EM6_0932 PF00111 2Fe-2S iron-sulfur cluster binding domain EM6_0935 PF04542 Sigma-70 region 2 EM6_0935 PF08281 Sigma-70, region 4 EM6_0938 PF00994 Probable molybdopterin binding domain EM6_0938 PF18146 Damage-inducible protein CinA KH domain EM6_0938 PF02464 Competence-damaged protein EM6_0939 PF17746 SfsA N-terminal OB domain EM6_0939 PF03749 Sugar fermentation stimulation protein RE domain EM6_0940 PF03706 Lysylphosphatidylglycerol synthase TM region EM6_0940 PF09924 Uncharacterised conserved protein (DUF2156) EM6_0942 PF02569 Pantoate-beta-alanine ligase EM6_0945 PF00027 Cyclic nucleotide-binding domain EM6_0945 PF01734 Patatin-like phospholipase EM6_0951 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EM6_0951 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EM6_0953 PF01554 MatE EM6_0954 PF01474 Class-II DAHP synthetase family EM6_0956 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_0956 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EM6_0957 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EM6_0958 PF12804 MobA-like NTP transferase domain EM6_0958 PF00132 Bacterial transferase hexapeptide (six repeats) EM6_0959 PF13419 Haloacid dehalogenase-like hydrolase EM6_0962 PF00999 Sodium/hydrogen exchanger family EM6_0962 PF02254 TrkA-N domain EM6_0964 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EM6_0964 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EM6_0966 PF01144 Coenzyme A transferase EM6_0967 PF01144 Coenzyme A transferase EM6_0970 PF02405 Permease MlaE EM6_0971 PF00005 ABC transporter EM6_0975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EM6_0975 PF00072 Response regulator receiver domain EM6_0975 PF01627 Hpt domain EM6_0975 PF00512 His Kinase A (phospho-acceptor) domain EM6_0975 PF00672 HAMP domain EM6_0975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_0977 PF01266 FAD dependent oxidoreductase EM6_0977 PF05690 Thiazole biosynthesis protein ThiG EM6_0983 PF02472 Biopolymer transport protein ExbD/TolR EM6_0984 PF01618 MotA/TolQ/ExbB proton channel family EM6_0985 PF13406 Transglycosylase SLT domain EM6_0989 PF00444 Ribosomal protein L36 EM6_0990 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) EM6_0993 PF02954 Bacterial regulatory protein, Fis family EM6_0993 PF00072 Response regulator receiver domain EM6_0993 PF00158 Sigma-54 interaction domain EM6_0999 PF05675 Protein of unknown function (DUF817) EM6_1000 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EM6_1000 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EM6_1001 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EM6_1002 PF02233 NAD(P) transhydrogenase beta subunit EM6_1004 PF02347 Glycine cleavage system P-protein EM6_1005 PF01597 Glycine cleavage H-protein EM6_1006 PF01571 Aminomethyltransferase folate-binding domain EM6_1006 PF08669 Glycine cleavage T-protein C-terminal barrel domain EM6_1010 PF02401 LytB protein EM6_1011 PF00075 RNase H EM6_1014 PF00132 Bacterial transferase hexapeptide (six repeats) EM6_1015 PF02562 PhoH-like protein EM6_1020 PF01513 ATP-NAD kinase EM6_1022 PF01773 Na+ dependent nucleoside transporter N-terminus EM6_1022 PF07662 Na+ dependent nucleoside transporter C-terminus EM6_1023 PF00072 Response regulator receiver domain EM6_1023 PF00486 Transcriptional regulatory protein, C terminal EM6_1024 PF00672 HAMP domain EM6_1024 PF00512 His Kinase A (phospho-acceptor) domain EM6_1024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1026 PF00004 ATPase family associated with various cellular activities (AAA) EM6_1026 PF17862 AAA+ lid domain EM6_1026 PF01434 Peptidase family M41 EM6_1026 PF06480 FtsH Extracellular EM6_1027 PF01171 PP-loop family EM6_1031 PF00691 OmpA family EM6_1032 PF04052 TolB amino-terminal domain EM6_1032 PF07676 WD40-like Beta Propeller Repeat EM6_1034 PF02472 Biopolymer transport protein ExbD/TolR EM6_1035 PF01618 MotA/TolQ/ExbB proton channel family EM6_1036 PF17864 RuvB AAA lid domain EM6_1036 PF05491 RuvB C-terminal winged helix domain EM6_1036 PF05496 Holliday junction DNA helicase RuvB P-loop domain EM6_1037 PF01330 RuvA N terminal domain EM6_1037 PF07499 RuvA, C-terminal domain EM6_1038 PF02075 Crossover junction endodeoxyribonuclease RuvC EM6_1042 PF07244 Surface antigen variable number repeat EM6_1042 PF17243 POTRA domain TamA domain 1 EM6_1042 PF01103 Surface antigen EM6_1045 PF12848 ABC transporter EM6_1045 PF00005 ABC transporter EM6_1046 PF13188 PAS domain EM6_1046 PF03707 Bacterial signalling protein N terminal repeat EM6_1046 PF00563 EAL domain EM6_1046 PF00990 Diguanylate cyclase, GGDEF domain EM6_1049 PF07690 Major Facilitator Superfamily EM6_1050 PF01869 BadF/BadG/BcrA/BcrD ATPase family EM6_1051 PF01979 Amidohydrolase family EM6_1052 PF00691 OmpA family EM6_1052 PF13488 Glycine zipper EM6_1057 PF02441 Flavoprotein EM6_1066 PF02581 Thiamine monophosphate synthase EM6_1069 PF09285 Elongation factor P, C-terminal EM6_1069 PF08207 Elongation factor P (EF-P) KOW-like domain EM6_1069 PF01132 Elongation factor P (EF-P) OB domain EM6_1070 PF00459 Inositol monophosphatase family EM6_1071 PF00440 Bacterial regulatory proteins, tetR family EM6_1071 PF16859 Tetracyclin repressor-like, C-terminal domain EM6_1073 PF00005 ABC transporter EM6_1073 PF00664 ABC transporter transmembrane region EM6_1074 PF01197 Ribosomal protein L31 EM6_1075 PF01699 Sodium/calcium exchanger protein EM6_1077 PF00696 Amino acid kinase family EM6_1081 PF14602 Hexapeptide repeat of succinyl-transferase EM6_1081 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EM6_1083 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family EM6_1084 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EM6_1084 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EM6_1085 PF00303 Thymidylate synthase EM6_1086 PF00186 Dihydrofolate reductase EM6_1087 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EM6_1089 PF10609 NUBPL iron-transfer P-loop NTPase EM6_1089 PF01883 Iron-sulfur cluster assembly protein EM6_1091 PF00326 Prolyl oligopeptidase family EM6_1091 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EM6_1092 PF01263 Aldose 1-epimerase EM6_1093 PF00920 Dehydratase family EM6_1096 PF00171 Aldehyde dehydrogenase family EM6_1098 PF08240 Alcohol dehydrogenase GroES-like domain EM6_1098 PF00107 Zinc-binding dehydrogenase EM6_1101 PF13340 Putative transposase of IS4/5 family (DUF4096) EM6_1105 PF13193 AMP-binding enzyme C-terminal domain EM6_1105 PF00501 AMP-binding enzyme EM6_1108 PF07715 TonB-dependent Receptor Plug Domain EM6_1108 PF00593 TonB dependent receptor EM6_1109 PF06965 Na+/H+ antiporter 1 EM6_1110 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EM6_1112 PF04960 Glutaminase EM6_1114 PF07676 WD40-like Beta Propeller Repeat EM6_1114 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EM6_1114 PF00326 Prolyl oligopeptidase family EM6_1117 PF13185 GAF domain EM6_1118 PF12848 ABC transporter EM6_1118 PF00005 ABC transporter EM6_1122 PF09335 SNARE associated Golgi protein EM6_1124 PF03232 Ubiquinone biosynthesis protein COQ7 EM6_1127 PF13180 PDZ domain EM6_1128 PF07690 Major Facilitator Superfamily EM6_1129 PF07690 Major Facilitator Superfamily EM6_1132 PF01196 Ribosomal protein L17 EM6_1134 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EM6_1134 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EM6_1134 PF01000 RNA polymerase Rpb3/RpoA insert domain EM6_1135 PF00411 Ribosomal protein S11 EM6_1136 PF00416 Ribosomal protein S13/S18 EM6_1138 PF00344 SecY translocase EM6_1139 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EM6_1140 PF00327 Ribosomal protein L30p/L7e EM6_1141 PF00333 Ribosomal protein S5, N-terminal domain EM6_1141 PF03719 Ribosomal protein S5, C-terminal domain EM6_1142 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EM6_1143 PF00347 Ribosomal protein L6 EM6_1144 PF00410 Ribosomal protein S8 EM6_1145 PF00253 Ribosomal protein S14p/S29e EM6_1146 PF00281 Ribosomal protein L5 EM6_1146 PF00673 ribosomal L5P family C-terminus EM6_1147 PF00467 KOW motif EM6_1147 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EM6_1148 PF00238 Ribosomal protein L14p/L23e EM6_1149 PF00366 Ribosomal protein S17 EM6_1150 PF00831 Ribosomal L29 protein EM6_1151 PF00252 Ribosomal protein L16p/L10e EM6_1152 PF00189 Ribosomal protein S3, C-terminal domain EM6_1152 PF07650 KH domain EM6_1153 PF00237 Ribosomal protein L22p/L17e EM6_1154 PF00203 Ribosomal protein S19 EM6_1155 PF03947 Ribosomal Proteins L2, C-terminal domain EM6_1155 PF00181 Ribosomal Proteins L2, RNA binding domain EM6_1156 PF00276 Ribosomal protein L23 EM6_1157 PF00573 Ribosomal protein L4/L1 family EM6_1158 PF00297 Ribosomal protein L3 EM6_1159 PF00338 Ribosomal protein S10p/S20e EM6_1162 PF00009 Elongation factor Tu GTP binding domain EM6_1162 PF03143 Elongation factor Tu C-terminal domain EM6_1162 PF03144 Elongation factor Tu domain 2 EM6_1163 PF00009 Elongation factor Tu GTP binding domain EM6_1163 PF14492 Elongation Factor G, domain II EM6_1163 PF03144 Elongation factor Tu domain 2 EM6_1163 PF03764 Elongation factor G, domain IV EM6_1163 PF00679 Elongation factor G C-terminus EM6_1164 PF00177 Ribosomal protein S7p/S5e EM6_1165 PF00164 Ribosomal protein S12/S23 EM6_1166 PF00128 Alpha amylase, catalytic domain EM6_1166 PF16657 Maltogenic Amylase, C-terminal domain EM6_1167 PF08245 Mur ligase middle domain EM6_1168 PF00953 Glycosyl transferase family 4 EM6_1169 PF08245 Mur ligase middle domain EM6_1169 PF02875 Mur ligase family, glutamate ligase domain EM6_1169 PF01225 Mur ligase family, catalytic domain EM6_1170 PF02875 Mur ligase family, glutamate ligase domain EM6_1170 PF08245 Mur ligase middle domain EM6_1170 PF01225 Mur ligase family, catalytic domain EM6_1171 PF03717 Penicillin-binding Protein dimerisation domain EM6_1171 PF00905 Penicillin binding protein transpeptidase domain EM6_1173 PF01795 MraW methylase family EM6_1174 PF02381 MraZ protein, putative antitoxin-like EM6_1178 PF01510 N-acetylmuramoyl-L-alanine amidase EM6_1180 PF05099 Tellurite resistance protein TerB EM6_1180 PF00226 DnaJ domain EM6_1184 PF01321 Creatinase/Prolidase N-terminal domain EM6_1184 PF00557 Metallopeptidase family M24 EM6_1189 PF00108 Thiolase, N-terminal domain EM6_1189 PF02803 Thiolase, C-terminal domain EM6_1192 PF07879 PHB/PHA accumulation regulator DNA-binding domain EM6_1192 PF05233 PHB accumulation regulatory domain EM6_1196 PF00535 Glycosyl transferase family 2 EM6_1200 PF00005 ABC transporter EM6_1200 PF00664 ABC transporter transmembrane region EM6_1202 PF00893 Small Multidrug Resistance protein EM6_1204 PF00206 Lyase EM6_1204 PF10415 Fumarase C C-terminus EM6_1207 PF00005 ABC transporter EM6_1207 PF08402 TOBE domain EM6_1208 PF00528 Binding-protein-dependent transport system inner membrane component EM6_1209 PF00528 Binding-protein-dependent transport system inner membrane component EM6_1210 PF13416 Bacterial extracellular solute-binding protein EM6_1211 PF00120 Glutamine synthetase, catalytic domain EM6_1212 PF00202 Aminotransferase class-III EM6_1213 PF00171 Aldehyde dehydrogenase family EM6_1214 PF00171 Aldehyde dehydrogenase family EM6_1216 PF00202 Aminotransferase class-III EM6_1226 PF01037 Lrp/AsnC ligand binding domain EM6_1227 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EM6_1227 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EM6_1238 PF00012 Hsp70 protein EM6_1241 PF01634 ATP phosphoribosyltransferase EM6_1241 PF08029 HisG, C-terminal domain EM6_1242 PF00815 Histidinol dehydrogenase EM6_1243 PF00475 Imidazoleglycerol-phosphate dehydratase EM6_1244 PF00117 Glutamine amidotransferase class-I EM6_1245 PF00977 Histidine biosynthesis protein EM6_1246 PF00977 Histidine biosynthesis protein EM6_1247 PF01502 Phosphoribosyl-AMP cyclohydrolase EM6_1247 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EM6_1253 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EM6_1253 PF13378 Enolase C-terminal domain-like EM6_1254 PF13593 SBF-like CPA transporter family (DUF4137) EM6_1255 PF08546 Ketopantoate reductase PanE/ApbA C terminal EM6_1255 PF02558 Ketopantoate reductase PanE/ApbA EM6_1257 PF01212 Beta-eliminating lyase EM6_1258 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EM6_1258 PF03129 Anticodon binding domain EM6_1258 PF04073 Aminoacyl-tRNA editing domain EM6_1260 PF02798 Glutathione S-transferase, N-terminal domain EM6_1260 PF00043 Glutathione S-transferase, C-terminal domain EM6_1263 PF16655 PhoD-like phosphatase, N-terminal domain EM6_1263 PF09423 PhoD-like phosphatase EM6_1264 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EM6_1265 PF07690 Major Facilitator Superfamily EM6_1267 PF01614 Bacterial transcriptional regulator EM6_1267 PF09339 IclR helix-turn-helix domain EM6_1268 PF00248 Aldo/keto reductase family EM6_1270 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EM6_1270 PF08666 SAF domain EM6_1275 PF11867 Domain of unknown function (DUF3387) EM6_1275 PF18766 SWI2/SNF2 ATPase EM6_1275 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EM6_1276 PF01420 Type I restriction modification DNA specificity domain EM6_1277 PF02384 N-6 DNA Methylase EM6_1278 PF00239 Resolvase, N terminal domain EM6_1278 PF02796 Helix-turn-helix domain of resolvase EM6_1281 PF00083 Sugar (and other) transporter EM6_1282 PF00920 Dehydratase family EM6_1283 PF08450 SMP-30/Gluconolactonase/LRE-like region EM6_1286 PF00356 Bacterial regulatory proteins, lacI family EM6_1291 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EM6_1291 PF00117 Glutamine amidotransferase class-I EM6_1292 PF02463 RecF/RecN/SMC N terminal domain EM6_1294 PF02142 MGS-like domain EM6_1294 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EM6_1294 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EM6_1297 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EM6_1297 PF00326 Prolyl oligopeptidase family EM6_1299 PF01614 Bacterial transcriptional regulator EM6_1299 PF09339 IclR helix-turn-helix domain EM6_1300 PF01274 Malate synthase EM6_1302 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_1302 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_1302 PF16355 Domain of unknown function (DUF4982) EM6_1302 PF00703 Glycosyl hydrolases family 2 EM6_1302 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 EM6_1303 PF01229 Glycosyl hydrolases family 39 EM6_1306 PF00005 ABC transporter EM6_1306 PF03459 TOBE domain EM6_1307 PF00528 Binding-protein-dependent transport system inner membrane component EM6_1310 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EM6_1312 PF07664 Ferrous iron transport protein B C terminus EM6_1312 PF04023 FeoA domain EM6_1312 PF17910 FeoB cytosolic helical domain EM6_1312 PF07670 Nucleoside recognition EM6_1312 PF02421 Ferrous iron transport protein B EM6_1315 PF00860 Permease family EM6_1316 PF01048 Phosphorylase superfamily EM6_1317 PF00474 Sodium:solute symporter family EM6_1318 PF14310 Fibronectin type III-like domain EM6_1318 PF00933 Glycosyl hydrolase family 3 N terminal domain EM6_1318 PF01915 Glycosyl hydrolase family 3 C-terminal domain EM6_1319 PF00356 Bacterial regulatory proteins, lacI family EM6_1320 PF01081 KDPG and KHG aldolase EM6_1321 PF02685 Glucokinase EM6_1322 PF00920 Dehydratase family EM6_1323 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EM6_1324 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EM6_1324 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EM6_1325 PF00311 Phosphoenolpyruvate carboxylase EM6_1328 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EM6_1328 PF01433 Peptidase family M1 domain EM6_1328 PF11940 Domain of unknown function (DUF3458) Ig-like fold EM6_1329 PF00072 Response regulator receiver domain EM6_1330 PF00989 PAS fold EM6_1330 PF00512 His Kinase A (phospho-acceptor) domain EM6_1330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1334 PF04542 Sigma-70 region 2 EM6_1334 PF04545 Sigma-70, region 4 EM6_1335 PF03710 Glutamate-ammonia ligase adenylyltransferase EM6_1335 PF08335 GlnD PII-uridylyltransferase EM6_1339 PF00512 His Kinase A (phospho-acceptor) domain EM6_1339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1339 PF00672 HAMP domain EM6_1340 PF00072 Response regulator receiver domain EM6_1340 PF00486 Transcriptional regulatory protein, C terminal EM6_1344 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EM6_1345 PF00005 ABC transporter EM6_1345 PF00664 ABC transporter transmembrane region EM6_1347 PF01323 DSBA-like thioredoxin domain EM6_1349 PF05973 Phage derived protein Gp49-like (DUF891) EM6_1350 PF00756 Putative esterase EM6_1351 PF10566 Glycoside hydrolase 97 EM6_1351 PF14508 Glycosyl-hydrolase 97 N-terminal EM6_1351 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation EM6_1353 PF00356 Bacterial regulatory proteins, lacI family EM6_1355 PF03315 Serine dehydratase beta chain EM6_1355 PF03313 Serine dehydratase alpha chain EM6_1360 PF01522 Polysaccharide deacetylase EM6_1360 PF03422 Carbohydrate binding module (family 6) EM6_1360 PF00457 Glycosyl hydrolases family 11 EM6_1361 PF02929 Beta galactosidase small chain EM6_1361 PF16353 Domain of unknown function(DUF4981) EM6_1361 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_1361 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_1361 PF00703 Glycosyl hydrolases family 2 EM6_1362 PF00356 Bacterial regulatory proteins, lacI family EM6_1364 PF04820 Tryptophan halogenase EM6_1365 PF00072 Response regulator receiver domain EM6_1365 PF00486 Transcriptional regulatory protein, C terminal EM6_1368 PF07043 Protein of unknown function (DUF1328) EM6_1370 PF01047 MarR family EM6_1371 PF00072 Response regulator receiver domain EM6_1371 PF02954 Bacterial regulatory protein, Fis family EM6_1371 PF00158 Sigma-54 interaction domain EM6_1372 PF13493 Domain of unknown function (DUF4118) EM6_1372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1372 PF00512 His Kinase A (phospho-acceptor) domain EM6_1372 PF02702 Osmosensitive K+ channel His kinase sensor domain EM6_1372 PF00582 Universal stress protein family EM6_1374 PF00512 His Kinase A (phospho-acceptor) domain EM6_1374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1374 PF09308 LuxQ, periplasmic EM6_1374 PF00072 Response regulator receiver domain EM6_1375 PF00072 Response regulator receiver domain EM6_1376 PF00672 HAMP domain EM6_1376 PF00989 PAS fold EM6_1376 PF00512 His Kinase A (phospho-acceptor) domain EM6_1376 PF18698 Histidine kinase sensor domain EM6_1376 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1383 PF07729 FCD domain EM6_1383 PF00392 Bacterial regulatory proteins, gntR family EM6_1384 PF00375 Sodium:dicarboxylate symporter family EM6_1385 PF00474 Sodium:solute symporter family EM6_1387 PF13443 Cro/C1-type HTH DNA-binding domain EM6_1389 PF09137 Glucodextranase, domain N EM6_1389 PF00723 Glycosyl hydrolases family 15 EM6_1390 PF09957 Bacterial antitoxin of type II TA system, VapB EM6_1392 PF13180 PDZ domain EM6_1393 PF03918 Cytochrome C biogenesis protein EM6_1394 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EM6_1394 PF01578 Cytochrome C assembly protein EM6_1395 PF03100 CcmE EM6_1398 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1398 PF08918 PhoQ Sensor EM6_1399 PF00486 Transcriptional regulatory protein, C terminal EM6_1399 PF00072 Response regulator receiver domain EM6_1401 PF01556 DnaJ C terminal domain EM6_1401 PF00226 DnaJ domain EM6_1415 PF04860 Phage portal protein EM6_1417 PF00106 short chain dehydrogenase EM6_1419 PF03692 Putative zinc- or iron-chelating domain EM6_1427 PF01037 Lrp/AsnC ligand binding domain EM6_1427 PF13404 AsnC-type helix-turn-helix domain EM6_1429 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EM6_1429 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EM6_1430 PF00378 Enoyl-CoA hydratase/isomerase EM6_1432 PF00682 HMGL-like EM6_1433 PF02770 Acyl-CoA dehydrogenase, middle domain EM6_1433 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EM6_1433 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EM6_1434 PF02785 Biotin carboxylase C-terminal domain EM6_1434 PF00289 Biotin carboxylase, N-terminal domain EM6_1434 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EM6_1435 PF00378 Enoyl-CoA hydratase/isomerase EM6_1436 PF01039 Carboxyl transferase domain EM6_1437 PF03466 LysR substrate binding domain EM6_1437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_1438 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EM6_1438 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EM6_1438 PF00205 Thiamine pyrophosphate enzyme, central domain EM6_1439 PF02515 CoA-transferase family III EM6_1440 PF02770 Acyl-CoA dehydrogenase, middle domain EM6_1440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EM6_1440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EM6_1441 PF00171 Aldehyde dehydrogenase family EM6_1442 PF01266 FAD dependent oxidoreductase EM6_1443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_1443 PF03466 LysR substrate binding domain EM6_1449 PF00356 Bacterial regulatory proteins, lacI family EM6_1450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EM6_1461 PF03783 Curli production assembly/transport component CsgG EM6_1463 PF05193 Peptidase M16 inactive domain EM6_1463 PF00675 Insulinase (Peptidase family M16) EM6_1464 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EM6_1464 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EM6_1465 PF00202 Aminotransferase class-III EM6_1473 PF00692 dUTPase EM6_1474 PF04379 ApaG domain EM6_1475 PF00672 HAMP domain EM6_1475 PF13426 PAS domain EM6_1475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_1476 PF00069 Protein kinase domain EM6_1479 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EM6_1479 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EM6_1481 PF00206 Lyase EM6_1481 PF14698 Argininosuccinate lyase C-terminal EM6_1482 PF08534 Redoxin EM6_1483 PF00155 Aminotransferase class I and II EM6_1484 PF00355 Rieske [2Fe-2S] domain EM6_1485 PF00817 impB/mucB/samB family EM6_1485 PF11798 IMS family HHH motif EM6_1485 PF11799 impB/mucB/samB family C-terminal domain EM6_1486 PF02805 Metal binding domain of Ada EM6_1486 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EM6_1486 PF12833 Helix-turn-helix domain EM6_1486 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EM6_1487 PF03610 PTS system fructose IIA component EM6_1487 PF03830 PTS system sorbose subfamily IIB component EM6_1489 PF00672 HAMP domain EM6_1489 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1489 PF00512 His Kinase A (phospho-acceptor) domain EM6_1489 PF13756 Stimulus-sensing domain EM6_1489 PF13755 Sensor N-terminal transmembrane domain EM6_1490 PF00072 Response regulator receiver domain EM6_1490 PF00486 Transcriptional regulatory protein, C terminal EM6_1492 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_1492 PF00672 HAMP domain EM6_1493 PF00672 HAMP domain EM6_1493 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_1495 PF01447 Thermolysin metallopeptidase, catalytic domain EM6_1495 PF04389 Peptidase family M28 EM6_1495 PF02868 Thermolysin metallopeptidase, alpha-helical domain EM6_1499 PF00476 DNA polymerase family A EM6_1499 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EM6_1499 PF01612 3'-5' exonuclease EM6_1499 PF01367 5'-3' exonuclease, C-terminal SAM fold EM6_1500 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB EM6_1501 PF01381 Helix-turn-helix EM6_1505 PF02566 OsmC-like protein EM6_1506 PF13230 Glutamine amidotransferases class-II EM6_1507 PF00107 Zinc-binding dehydrogenase EM6_1507 PF08240 Alcohol dehydrogenase GroES-like domain EM6_1510 PF00440 Bacterial regulatory proteins, tetR family EM6_1512 PF01923 Cobalamin adenosyltransferase EM6_1514 PF01012 Electron transfer flavoprotein domain EM6_1515 PF00766 Electron transfer flavoprotein FAD-binding domain EM6_1515 PF01012 Electron transfer flavoprotein domain EM6_1516 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EM6_1516 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EM6_1518 PF04235 Protein of unknown function (DUF418) EM6_1519 PF01817 Chorismate mutase type II EM6_1519 PF00793 DAHP synthetase I family EM6_1521 PF00682 HMGL-like EM6_1521 PF08502 LeuA allosteric (dimerisation) domain EM6_1522 PF06733 DEAD_2 EM6_1522 PF13307 Helicase C-terminal domain EM6_1524 PF01925 Sulfite exporter TauE/SafE EM6_1525 PF01471 Putative peptidoglycan binding domain EM6_1525 PF08238 Sel1 repeat EM6_1530 PF03976 Polyphosphate kinase 2 (PPK2) EM6_1532 PF00463 Isocitrate lyase family EM6_1534 PF01381 Helix-turn-helix EM6_1534 PF09856 Predicted transcriptional regulator (DUF2083) EM6_1534 PF06114 IrrE N-terminal-like domain EM6_1536 PF00392 Bacterial regulatory proteins, gntR family EM6_1536 PF07729 FCD domain EM6_1537 PF00912 Transglycosylase EM6_1539 PF02492 CobW/HypB/UreG, nucleotide-binding domain EM6_1539 PF07683 Cobalamin synthesis protein cobW C-terminal domain EM6_1540 PF00829 Ribosomal prokaryotic L21 protein EM6_1541 PF01016 Ribosomal L27 protein EM6_1543 PF01018 GTP1/OBG EM6_1543 PF01926 50S ribosome-binding GTPase EM6_1544 PF01467 Cytidylyltransferase-like EM6_1546 PF02590 Predicted SPOUT methyltransferase EM6_1548 PF00381 PTS HPr component phosphorylation site EM6_1549 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EM6_1553 PF13180 PDZ domain EM6_1554 PF13488 Glycine zipper EM6_1554 PF00691 OmpA family EM6_1556 PF02719 Polysaccharide biosynthesis protein EM6_1557 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EM6_1558 PF08666 SAF domain EM6_1558 PF03102 NeuB family EM6_1560 PF00384 Molybdopterin oxidoreductase EM6_1560 PF01568 Molydopterin dinucleotide binding domain EM6_1561 PF12146 Serine aminopeptidase, S33 EM6_1563 PF03454 MoeA C-terminal region (domain IV) EM6_1563 PF00994 Probable molybdopterin binding domain EM6_1563 PF03453 MoeA N-terminal region (domain I and II) EM6_1564 PF00994 Probable molybdopterin binding domain EM6_1565 PF04055 Radical SAM superfamily EM6_1565 PF06463 Molybdenum Cofactor Synthesis C EM6_1566 PF00135 Carboxylesterase family EM6_1567 PF13673 Acetyltransferase (GNAT) domain EM6_1569 PF01232 Mannitol dehydrogenase Rossmann domain EM6_1569 PF08125 Mannitol dehydrogenase C-terminal domain EM6_1570 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EM6_1570 PF08666 SAF domain EM6_1571 PF00356 Bacterial regulatory proteins, lacI family EM6_1572 PF02614 Glucuronate isomerase EM6_1573 PF06434 Aconitate hydratase 2 N-terminus EM6_1573 PF11791 Aconitate B N-terminal domain EM6_1573 PF00330 Aconitase family (aconitate hydratase) EM6_1576 PF00694 Aconitase C-terminal domain EM6_1576 PF00330 Aconitase family (aconitate hydratase) EM6_1578 PF00005 ABC transporter EM6_1579 PF03379 CcmB protein EM6_1580 PF01578 Cytochrome C assembly protein EM6_1582 PF08534 Redoxin EM6_1583 PF00800 Prephenate dehydratase EM6_1583 PF01842 ACT domain EM6_1583 PF01817 Chorismate mutase type II EM6_1584 PF00034 Cytochrome c EM6_1586 PF00883 Cytosol aminopeptidase family, catalytic domain EM6_1586 PF02789 Cytosol aminopeptidase family, N-terminal domain EM6_1588 PF00268 Ribonucleotide reductase, small chain EM6_1590 PF13180 PDZ domain EM6_1590 PF03572 Peptidase family S41 EM6_1591 PF00425 chorismate binding enzyme EM6_1591 PF04715 Anthranilate synthase component I, N terminal region EM6_1599 PF00263 Bacterial type II and III secretion system protein EM6_1599 PF04972 BON domain EM6_1599 PF13629 Pilus formation protein N terminal region EM6_1602 PF00437 Type II/IV secretion system protein EM6_1605 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EM6_1605 PF00929 Exonuclease EM6_1605 PF02811 PHP domain EM6_1605 PF14579 Helix-hairpin-helix motif EM6_1605 PF11490 DNA polymerase III polC-type N-terminus II EM6_1605 PF07733 Bacterial DNA polymerase III alpha NTPase domain EM6_1608 PF00892 EamA-like transporter family EM6_1609 PF02774 Semialdehyde dehydrogenase, dimerisation domain EM6_1609 PF01118 Semialdehyde dehydrogenase, NAD binding domain EM6_1610 PF00072 Response regulator receiver domain EM6_1610 PF00486 Transcriptional regulatory protein, C terminal EM6_1611 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_1611 PF13192 Thioredoxin domain EM6_1612 PF03969 AFG1-like ATPase EM6_1616 PF03328 HpcH/HpaI aldolase/citrate lyase family EM6_1617 PF01027 Inhibitor of apoptosis-promoting Bax1 EM6_1621 PF18370 Rhamnogalacturonan I lyases beta-sheet domain EM6_1622 PF00512 His Kinase A (phospho-acceptor) domain EM6_1622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1622 PF07689 KaiB domain EM6_1624 PF00067 Cytochrome P450 EM6_1628 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus EM6_1628 PF01048 Phosphorylase superfamily EM6_1630 PF07237 Protein of unknown function (DUF1428) EM6_1631 PF07237 Protein of unknown function (DUF1428) EM6_1632 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EM6_1635 PF00317 Ribonucleotide reductase, all-alpha domain EM6_1635 PF02867 Ribonucleotide reductase, barrel domain EM6_1635 PF03477 ATP cone domain EM6_1636 PF02261 Aspartate decarboxylase EM6_1637 PF00440 Bacterial regulatory proteins, tetR family EM6_1639 PF13439 Glycosyltransferase Family 4 EM6_1639 PF00534 Glycosyl transferases group 1 EM6_1640 PF01916 Deoxyhypusine synthase EM6_1642 PF00672 HAMP domain EM6_1642 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_1642 PF02743 Cache domain EM6_1643 PF00005 ABC transporter EM6_1645 PF00528 Binding-protein-dependent transport system inner membrane component EM6_1650 PF04279 Intracellular septation protein A EM6_1651 PF00448 SRP54-type protein, GTPase domain EM6_1651 PF02881 SRP54-type protein, helical bundle domain EM6_1652 PF00919 Uncharacterized protein family UPF0004 EM6_1652 PF04055 Radical SAM superfamily EM6_1653 PF01678 Diaminopimelate epimerase EM6_1655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_1655 PF02743 Cache domain EM6_1655 PF00672 HAMP domain EM6_1656 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EM6_1657 PF02874 ATP synthase alpha/beta family, beta-barrel domain EM6_1657 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EM6_1658 PF00231 ATP synthase EM6_1659 PF02874 ATP synthase alpha/beta family, beta-barrel domain EM6_1659 PF00306 ATP synthase alpha/beta chain, C terminal domain EM6_1659 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EM6_1660 PF00213 ATP synthase delta (OSCP) subunit EM6_1662 PF03471 Transporter associated domain EM6_1662 PF03741 Integral membrane protein TerC family EM6_1664 PF00270 DEAD/DEAH box helicase EM6_1664 PF17764 3′ DNA-binding domain (3′BD) EM6_1664 PF18074 Primosomal protein N C-terminal domain EM6_1664 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EM6_1666 PF02899 Phage integrase, N-terminal SAM-like domain EM6_1666 PF00589 Phage integrase family EM6_1667 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EM6_1667 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_1671 PF02817 e3 binding domain EM6_1671 PF00364 Biotin-requiring enzyme EM6_1671 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EM6_1672 PF16078 2-oxoglutarate dehydrogenase N-terminus EM6_1672 PF16870 2-oxoglutarate dehydrogenase C-terminal EM6_1672 PF02779 Transketolase, pyrimidine binding domain EM6_1672 PF00676 Dehydrogenase E1 component EM6_1673 PF00549 CoA-ligase EM6_1673 PF02629 CoA binding domain EM6_1674 PF00549 CoA-ligase EM6_1674 PF08442 ATP-grasp domain EM6_1675 PF07690 Major Facilitator Superfamily EM6_1687 PF02630 SCO1/SenC EM6_1688 PF00512 His Kinase A (phospho-acceptor) domain EM6_1688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1689 PF00072 Response regulator receiver domain EM6_1692 PF01022 Bacterial regulatory protein, arsR family EM6_1694 PF00512 His Kinase A (phospho-acceptor) domain EM6_1694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1696 PF00072 Response regulator receiver domain EM6_1696 PF00486 Transcriptional regulatory protein, C terminal EM6_1700 PF07690 Major Facilitator Superfamily EM6_1704 PF00005 ABC transporter EM6_1705 PF04552 Sigma-54, DNA binding domain EM6_1705 PF00309 Sigma-54 factor, Activator interacting domain (AID) EM6_1705 PF04963 Sigma-54 factor, core binding domain EM6_1706 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus EM6_1706 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EM6_1707 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EM6_1708 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EM6_1708 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EM6_1709 PF00011 Hsp20/alpha crystallin family EM6_1711 PF04055 Radical SAM superfamily EM6_1711 PF18693 TRAM domain EM6_1711 PF00919 Uncharacterized protein family UPF0004 EM6_1712 PF00923 Transaldolase/Fructose-6-phosphate aldolase EM6_1713 PF05239 PRC-barrel domain EM6_1713 PF01782 RimM N-terminal domain EM6_1715 PF01168 Alanine racemase, N-terminal domain EM6_1717 PF03448 MgtE intracellular N domain EM6_1717 PF01769 Divalent cation transporter EM6_1717 PF00571 CBS domain EM6_1718 PF00111 2Fe-2S iron-sulfur cluster binding domain EM6_1719 PF13085 2Fe-2S iron-sulfur cluster binding domain EM6_1720 PF00890 FAD binding domain EM6_1720 PF02910 Fumarate reductase flavoprotein C-term EM6_1722 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EM6_1724 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EM6_1724 PF00056 lactate/malate dehydrogenase, NAD binding domain EM6_1726 PF00155 Aminotransferase class I and II EM6_1729 PF02881 SRP54-type protein, helical bundle domain EM6_1729 PF00448 SRP54-type protein, GTPase domain EM6_1729 PF02978 Signal peptide binding domain EM6_1730 PF00886 Ribosomal protein S16 EM6_1731 PF01042 Endoribonuclease L-PSP EM6_1732 PF03548 Outer membrane lipoprotein carrier protein LolA EM6_1733 PF00905 Penicillin binding protein transpeptidase domain EM6_1733 PF06832 Penicillin-Binding Protein C-terminus Family EM6_1733 PF00912 Transglycosylase EM6_1734 PF17962 Bacterial macroglobulin domain 6 EM6_1734 PF00207 Alpha-2-macroglobulin family EM6_1734 PF07703 Alpha-2-macroglobulin bait region domain EM6_1734 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain EM6_1734 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain EM6_1734 PF11974 Bacterial alpha-2-macroglobulin MG3 domain EM6_1734 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain EM6_1734 PF01835 MG2 domain EM6_1734 PF07678 A-macroglobulin TED domain EM6_1735 PF00486 Transcriptional regulatory protein, C terminal EM6_1735 PF00072 Response regulator receiver domain EM6_1738 PF12100 Domain of unknown function (DUF3576) EM6_1739 PF08264 Anticodon-binding domain of tRNA EM6_1739 PF13603 Leucyl-tRNA synthetase, Domain 2 EM6_1739 PF00133 tRNA synthetases class I (I, L, M and V) EM6_1742 PF17762 HTH domain found in ParB protein EM6_1742 PF02195 ParB-like nuclease domain EM6_1743 PF13614 AAA domain EM6_1744 PF02527 rRNA small subunit methyltransferase G EM6_1746 PF10396 GTP-binding protein TrmE N-terminus EM6_1746 PF12631 MnmE helical domain EM6_1746 PF01926 50S ribosome-binding GTPase EM6_1748 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EM6_1748 PF07498 Rho termination factor, N-terminal domain EM6_1748 PF07497 Rho termination factor, RNA-binding domain EM6_1750 PF00762 Ferrochelatase EM6_1751 PF01208 Uroporphyrinogen decarboxylase (URO-D) EM6_1752 PF03618 Kinase/pyrophosphorylase EM6_1753 PF02545 Maf-like protein EM6_1754 PF01488 Shikimate / quinate 5-dehydrogenase EM6_1754 PF08501 Shikimate dehydrogenase substrate binding domain EM6_1755 PF01121 Dephospho-CoA kinase EM6_1756 PF00929 Exonuclease EM6_1757 PF02556 Preprotein translocase subunit SecB EM6_1759 PF03562 MltA specific insert domain EM6_1759 PF06725 3D domain EM6_1761 PF05872 Bacterial protein of unknown function (DUF853) EM6_1762 PF05088 Bacterial NAD-glutamate dehydrogenase EM6_1764 PF01106 NifU-like domain EM6_1765 PF00814 Glycoprotease family EM6_1766 PF00583 Acetyltransferase (GNAT) family EM6_1767 PF01475 Ferric uptake regulator family EM6_1768 PF00295 Glycosyl hydrolases family 28 EM6_1770 PF00919 Uncharacterized protein family UPF0004 EM6_1770 PF01938 TRAM domain EM6_1770 PF04055 Radical SAM superfamily EM6_1771 PF02562 PhoH-like protein EM6_1772 PF02130 Uncharacterized protein family UPF0054 EM6_1773 PF00571 CBS domain EM6_1773 PF03471 Transporter associated domain EM6_1774 PF00795 Carbon-nitrogen hydrolase EM6_1775 PF01381 Helix-turn-helix EM6_1776 PF02773 S-adenosylmethionine synthetase, C-terminal domain EM6_1776 PF02772 S-adenosylmethionine synthetase, central domain EM6_1776 PF00438 S-adenosylmethionine synthetase, N-terminal domain EM6_1777 PF02390 Putative methyltransferase EM6_1779 PF02576 RimP N-terminal domain EM6_1779 PF17384 RimP C-terminal SH3 domain EM6_1780 PF00575 S1 RNA binding domain EM6_1780 PF08529 NusA N-terminal domain EM6_1780 PF13184 NusA-like KH domain EM6_1783 PF04760 Translation initiation factor IF-2, N-terminal region EM6_1783 PF04760 Translation initiation factor IF-2, N-terminal region EM6_1783 PF00009 Elongation factor Tu GTP binding domain EM6_1783 PF11987 Translation-initiation factor 2 EM6_1783 PF08364 Bacterial translation initiation factor IF-2 associated region EM6_1783 PF11987 Translation-initiation factor 2 EM6_1783 PF08364 Bacterial translation initiation factor IF-2 associated region EM6_1783 PF00009 Elongation factor Tu GTP binding domain EM6_1784 PF00551 Formyl transferase EM6_1787 PF02033 Ribosome-binding factor A EM6_1788 PF01509 TruB family pseudouridylate synthase (N terminal domain) EM6_1788 PF16198 tRNA pseudouridylate synthase B C-terminal domain EM6_1789 PF00312 Ribosomal protein S15 EM6_1790 PF01138 3' exoribonuclease family, domain 1 EM6_1790 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EM6_1790 PF00575 S1 RNA binding domain EM6_1790 PF03725 3' exoribonuclease family, domain 2 EM6_1790 PF00013 KH domain EM6_1795 PF07995 Glucose / Sorbosone dehydrogenase EM6_1796 PF01245 Ribosomal protein L19 EM6_1797 PF01746 tRNA (Guanine-1)-methyltransferase EM6_1798 PF00593 TonB dependent receptor EM6_1798 PF07715 TonB-dependent Receptor Plug Domain EM6_1800 PF03551 Transcriptional regulator PadR-like family EM6_1805 PF00480 ROK family EM6_1808 PF00672 HAMP domain EM6_1808 PF16591 Helical bimodular sensor domain EM6_1808 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_1810 PF01380 SIS domain EM6_1811 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EM6_1811 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EM6_1811 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EM6_1811 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EM6_1812 PF17854 FtsK alpha domain EM6_1812 PF01580 FtsK/SpoIIIE family EM6_1812 PF09397 Ftsk gamma domain EM6_1812 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EM6_1813 PF03922 OmpW family EM6_1815 PF00149 Calcineurin-like phosphoesterase EM6_1817 PF00085 Thioredoxin EM6_1818 PF13361 UvrD-like helicase C-terminal domain EM6_1818 PF00580 UvrD/REP helicase N-terminal domain EM6_1818 PF12705 PD-(D/E)XK nuclease superfamily EM6_1820 PF12804 MobA-like NTP transferase domain EM6_1821 PF01636 Phosphotransferase enzyme family EM6_1822 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EM6_1827 PF01209 ubiE/COQ5 methyltransferase family EM6_1828 PF03109 ABC1 family EM6_1829 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_1829 PF00672 HAMP domain EM6_1830 PF01544 CorA-like Mg2+ transporter protein EM6_1831 PF00990 Diguanylate cyclase, GGDEF domain EM6_1831 PF00563 EAL domain EM6_1831 PF08447 PAS fold EM6_1831 PF08448 PAS fold EM6_1833 PF04127 DNA / pantothenate metabolism flavoprotein EM6_1833 PF02441 Flavoprotein EM6_1834 PF00692 dUTPase EM6_1836 PF01113 Dihydrodipicolinate reductase, N-terminus EM6_1836 PF05173 Dihydrodipicolinate reductase, C-terminus EM6_1837 PF00226 DnaJ domain EM6_1837 PF01556 DnaJ C terminal domain EM6_1837 PF00684 DnaJ central domain EM6_1838 PF00012 Hsp70 protein EM6_1839 PF01738 Dienelactone hydrolase family EM6_1840 PF01025 GrpE EM6_1841 PF01628 HrcA protein C terminal domain EM6_1843 PF01138 3' exoribonuclease family, domain 1 EM6_1843 PF03725 3' exoribonuclease family, domain 2 EM6_1844 PF13443 Cro/C1-type HTH DNA-binding domain EM6_1846 PF01725 Ham1 family EM6_1847 PF04055 Radical SAM superfamily EM6_1847 PF06969 HemN C-terminal domain EM6_1849 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EM6_1850 PF02021 Uncharacterised protein family UPF0102 EM6_1851 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EM6_1851 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EM6_1852 PF13335 Magnesium chelatase, subunit ChlI C-terminal EM6_1852 PF01078 Magnesium chelatase, subunit ChlI EM6_1853 PF00672 HAMP domain EM6_1853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1853 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EM6_1853 PF00512 His Kinase A (phospho-acceptor) domain EM6_1853 PF00072 Response regulator receiver domain EM6_1853 PF01627 Hpt domain EM6_1854 PF07690 Major Facilitator Superfamily EM6_1855 PF01515 Phosphate acetyl/butaryl transferase EM6_1855 PF00390 Malic enzyme, N-terminal domain EM6_1855 PF03949 Malic enzyme, NAD binding domain EM6_1856 PF05188 MutS domain II EM6_1856 PF00488 MutS domain V EM6_1856 PF05190 MutS family domain IV EM6_1856 PF01624 MutS domain I EM6_1856 PF05192 MutS domain III EM6_1857 PF08335 GlnD PII-uridylyltransferase EM6_1857 PF01842 ACT domain EM6_1857 PF01966 HD domain EM6_1858 PF08447 PAS fold EM6_1858 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_1858 PF13426 PAS domain EM6_1861 PF03023 Lipid II flippase MurJ EM6_1862 PF00579 tRNA synthetases class I (W and Y) EM6_1866 PF02142 MGS-like domain EM6_1866 PF01808 AICARFT/IMPCHase bienzyme EM6_1867 PF07940 Heparinase II/III-like protein EM6_1868 PF00834 Ribulose-phosphate 3 epimerase family EM6_1869 PF01029 NusB family EM6_1869 PF01189 16S rRNA methyltransferase RsmB/F EM6_1870 PF01435 Peptidase family M48 EM6_1871 PF07896 Protein of unknown function (DUF1674) EM6_1873 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EM6_1874 PF01914 MarC family integral membrane protein EM6_1875 PF00106 short chain dehydrogenase EM6_1876 PF02082 Transcriptional regulator EM6_1877 PF02705 K+ potassium transporter EM6_1878 PF00764 Arginosuccinate synthase EM6_1879 PF00293 NUDIX domain EM6_1880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1880 PF00986 DNA gyrase B subunit, carboxyl terminus EM6_1880 PF01751 Toprim domain EM6_1880 PF00204 DNA gyrase B EM6_1881 PF02463 RecF/RecN/SMC N terminal domain EM6_1884 PF02768 DNA polymerase III beta subunit, C-terminal domain EM6_1884 PF00712 DNA polymerase III beta subunit, N-terminal domain EM6_1884 PF02767 DNA polymerase III beta subunit, central domain EM6_1885 PF11638 DnaA N-terminal domain EM6_1885 PF00308 Bacterial dnaA protein EM6_1885 PF08299 Bacterial dnaA protein helix-turn-helix EM6_1887 PF01649 Ribosomal protein S20 EM6_1888 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EM6_1888 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EM6_1888 PF06827 Zinc finger found in FPG and IleRS EM6_1890 PF00905 Penicillin binding protein transpeptidase domain EM6_1890 PF00912 Transglycosylase EM6_1891 PF00270 DEAD/DEAH box helicase EM6_1891 PF00271 Helicase conserved C-terminal domain EM6_1891 PF00570 HRDC domain EM6_1891 PF16124 RecQ zinc-binding EM6_1891 PF09382 RQC domain EM6_1892 PF07690 Major Facilitator Superfamily EM6_1893 PF00892 EamA-like transporter family EM6_1900 PF02224 Cytidylate kinase EM6_1901 PF00575 S1 RNA binding domain EM6_1902 PF00216 Bacterial DNA-binding protein EM6_1903 PF01741 Large-conductance mechanosensitive channel, MscL EM6_1904 PF02685 Glucokinase EM6_1905 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EM6_1906 PF00291 Pyridoxal-phosphate dependent enzyme EM6_1907 PF00290 Tryptophan synthase alpha chain EM6_1908 PF01039 Carboxyl transferase domain EM6_1909 PF08245 Mur ligase middle domain EM6_1910 PF03979 Sigma-70 factor, region 1.1 EM6_1910 PF00140 Sigma-70 factor, region 1.2 EM6_1910 PF04539 Sigma-70 region 3 EM6_1910 PF04545 Sigma-70, region 4 EM6_1910 PF04542 Sigma-70 region 2 EM6_1910 PF04546 Sigma-70, non-essential region EM6_1911 PF01807 CHC2 zinc finger EM6_1911 PF08275 DNA primase catalytic core, N-terminal domain EM6_1911 PF13662 Toprim domain EM6_1911 PF08278 DNA primase DnaG DnaB-binding EM6_1911 PF10410 DnaB-helicase binding domain of primase EM6_1914 PF01636 Phosphotransferase enzyme family EM6_1915 PF00291 Pyridoxal-phosphate dependent enzyme EM6_1915 PF00571 CBS domain EM6_1916 PF03466 LysR substrate binding domain EM6_1916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_1917 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_1920 PF00291 Pyridoxal-phosphate dependent enzyme EM6_1920 PF14821 Threonine synthase N terminus EM6_1921 PF00696 Amino acid kinase family EM6_1921 PF01472 PUA domain EM6_1923 PF00171 Aldehyde dehydrogenase family EM6_1924 PF00989 PAS fold EM6_1924 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_1924 PF00512 His Kinase A (phospho-acceptor) domain EM6_1924 PF16736 Single Cache-like EM6_1925 PF01895 PhoU domain EM6_1926 PF00486 Transcriptional regulatory protein, C terminal EM6_1926 PF00072 Response regulator receiver domain EM6_1928 PF07690 Major Facilitator Superfamily EM6_1929 PF00085 Thioredoxin EM6_1930 PF03966 Trm112p-like protein EM6_1931 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_1931 PF03466 LysR substrate binding domain EM6_1932 PF01494 FAD binding domain EM6_1933 PF00144 Beta-lactamase EM6_1934 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EM6_1934 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EM6_1935 PF00291 Pyridoxal-phosphate dependent enzyme EM6_1935 PF13291 ACT domain EM6_1936 PF00795 Carbon-nitrogen hydrolase EM6_1936 PF02540 NAD synthase EM6_1938 PF01850 PIN domain EM6_1939 PF00484 Carbonic anhydrase EM6_1941 PF01467 Cytidylyltransferase-like EM6_1941 PF00293 NUDIX domain EM6_1942 PF00265 Thymidine kinase EM6_1943 PF00291 Pyridoxal-phosphate dependent enzyme EM6_1947 PF00459 Inositol monophosphatase family EM6_1948 PF01507 Phosphoadenosine phosphosulfate reductase family EM6_1949 PF00009 Elongation factor Tu GTP binding domain EM6_1950 PF00793 DAHP synthetase I family EM6_1951 PF02348 Cytidylyltransferase EM6_1952 PF01380 SIS domain EM6_1952 PF00571 CBS domain EM6_1958 PF00535 Glycosyl transferase family 2 EM6_1962 PF13007 Transposase C of IS166 homeodomain EM6_1962 PF13817 IS66 C-terminal element EM6_1962 PF03050 Transposase IS66 family EM6_1962 PF13005 zinc-finger binding domain of transposase IS66 EM6_1971 PF13005 zinc-finger binding domain of transposase IS66 EM6_1971 PF13007 Transposase C of IS166 homeodomain EM6_1971 PF13817 IS66 C-terminal element EM6_1971 PF03050 Transposase IS66 family EM6_1972 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EM6_1973 PF16363 GDP-mannose 4,6 dehydratase EM6_1974 PF04321 RmlD substrate binding domain EM6_1975 PF00483 Nucleotidyl transferase EM6_1976 PF01061 ABC-2 type transporter EM6_1977 PF00005 ABC transporter EM6_1978 PF14307 Glycosyltransferase WbsX EM6_1978 PF05045 Rhamnan synthesis protein F EM6_1985 PF08548 Peptidase M10 serralysin C terminal EM6_1985 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) EM6_1985 PF00413 Matrixin EM6_1986 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EM6_1986 PF00529 HlyD membrane-fusion protein of T1SS EM6_1987 PF00005 ABC transporter EM6_1987 PF00664 ABC transporter transmembrane region EM6_1988 PF00535 Glycosyl transferase family 2 EM6_1989 PF01177 Asp/Glu/Hydantoin racemase EM6_1990 PF01432 Peptidase family M3 EM6_1993 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EM6_1993 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EM6_1994 PF06968 Biotin and Thiamin Synthesis associated domain EM6_1994 PF04055 Radical SAM superfamily EM6_1995 PF06055 Exopolysaccharide synthesis, ExoD EM6_1996 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EM6_1996 PF05221 S-adenosyl-L-homocysteine hydrolase EM6_1997 PF01050 Mannose-6-phosphate isomerase EM6_1997 PF00483 Nucleotidyl transferase EM6_2001 PF09224 Domain of unknown function (DUF1961) EM6_2002 PF01261 Xylose isomerase-like TIM barrel EM6_2004 PF08220 DeoR-like helix-turn-helix domain EM6_2004 PF00455 DeoR C terminal sensor domain EM6_2005 PF13635 Domain of unknown function (DUF4143) EM6_2005 PF13173 AAA domain EM6_2006 PF05336 L-rhamnose mutarotase EM6_2007 PF13472 GDSL-like Lipase/Acylhydrolase family EM6_2013 PF02348 Cytidylyltransferase EM6_2016 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EM6_2016 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EM6_2017 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EM6_2017 PF00355 Rieske [2Fe-2S] domain EM6_2023 PF01557 Fumarylacetoacetate (FAA) hydrolase family EM6_2024 PF13378 Enolase C-terminal domain-like EM6_2024 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EM6_2025 PF09339 IclR helix-turn-helix domain EM6_2025 PF01614 Bacterial transcriptional regulator EM6_2027 PF04962 KduI/IolB family EM6_2030 PF00005 ABC transporter EM6_2030 PF17912 MalK OB fold domain EM6_2031 PF00528 Binding-protein-dependent transport system inner membrane component EM6_2032 PF00528 Binding-protein-dependent transport system inner membrane component EM6_2034 PF00295 Glycosyl hydrolases family 28 EM6_2035 PF07470 Glycosyl Hydrolase Family 88 EM6_2039 PF00294 pfkB family carbohydrate kinase EM6_2040 PF00512 His Kinase A (phospho-acceptor) domain EM6_2040 PF00072 Response regulator receiver domain EM6_2040 PF01627 Hpt domain EM6_2040 PF00672 HAMP domain EM6_2040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2040 PF17149 Periplasmic sensor domain found in signal transduction proteins EM6_2041 PF11838 ERAP1-like C-terminal domain EM6_2041 PF01433 Peptidase family M1 domain EM6_2042 PF00270 DEAD/DEAH box helicase EM6_2042 PF00271 Helicase conserved C-terminal domain EM6_2045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EM6_2045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EM6_2046 PF01430 Hsp33 protein EM6_2047 PF01507 Phosphoadenosine phosphosulfate reductase family EM6_2049 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EM6_2049 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EM6_2051 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EM6_2051 PF14824 Sirohaem biosynthesis protein central EM6_2051 PF10414 Sirohaem synthase dimerisation region EM6_2054 PF01641 SelR domain EM6_2056 PF00171 Aldehyde dehydrogenase family EM6_2057 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EM6_2059 PF00909 Ammonium Transporter Family EM6_2060 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_2060 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EM6_2061 PF00310 Glutamine amidotransferases class-II EM6_2061 PF01493 GXGXG motif EM6_2061 PF01645 Conserved region in glutamate synthase EM6_2061 PF04898 Glutamate synthase central domain EM6_2062 PF08238 Sel1 repeat EM6_2063 PF00342 Phosphoglucose isomerase EM6_2065 PF08331 Domain of unknown function (DUF1730) EM6_2066 PF13417 Glutathione S-transferase, N-terminal domain EM6_2066 PF00043 Glutathione S-transferase, C-terminal domain EM6_2067 PF01545 Cation efflux family EM6_2067 PF16916 Dimerisation domain of Zinc Transporter EM6_2069 PF02673 Bacitracin resistance protein BacA EM6_2074 PF00749 tRNA synthetases class I (E and Q), catalytic domain EM6_2076 PF13439 Glycosyltransferase Family 4 EM6_2076 PF00534 Glycosyl transferases group 1 EM6_2077 PF01037 Lrp/AsnC ligand binding domain EM6_2080 PF01638 HxlR-like helix-turn-helix EM6_2086 PF03963 Flagellar hook capping protein - N-terminal region EM6_2086 PF13861 FlgD Tudor-like domain EM6_2086 PF13860 FlgD Ig-like domain EM6_2087 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EM6_2087 PF07559 Flagellar basal body protein FlaE EM6_2087 PF00460 Flagella basal body rod protein EM6_2089 PF08345 Flagellar M-ring protein C-terminal EM6_2089 PF01514 Secretory protein of YscJ/FliF family EM6_2090 PF14842 FliG N-terminal domain EM6_2090 PF14841 FliG middle domain EM6_2090 PF01706 FliG C-terminal domain EM6_2092 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EM6_2093 PF02954 Bacterial regulatory protein, Fis family EM6_2093 PF00158 Sigma-54 interaction domain EM6_2095 PF00771 FHIPEP family EM6_2099 PF02874 ATP synthase alpha/beta family, beta-barrel domain EM6_2099 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EM6_2099 PF18269 T3SS EscN ATPase C-terminal domain EM6_2101 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EM6_2105 PF00486 Transcriptional regulatory protein, C terminal EM6_2105 PF00072 Response regulator receiver domain EM6_2110 PF01739 CheR methyltransferase, SAM binding domain EM6_2110 PF03705 CheR methyltransferase, all-alpha domain EM6_2111 PF01339 CheB methylesterase EM6_2111 PF00072 Response regulator receiver domain EM6_2112 PF00486 Transcriptional regulatory protein, C terminal EM6_2112 PF00072 Response regulator receiver domain EM6_2114 PF01584 CheW-like domain EM6_2114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2114 PF07194 P2 response regulator binding domain EM6_2114 PF01627 Hpt domain EM6_2114 PF02895 Signal transducing histidine kinase, homodimeric domain EM6_2115 PF10090 Histidine phosphotransferase C-terminal domain EM6_2116 PF00291 Pyridoxal-phosphate dependent enzyme EM6_2119 PF08299 Bacterial dnaA protein helix-turn-helix EM6_2119 PF00308 Bacterial dnaA protein EM6_2119 PF11638 DnaA N-terminal domain EM6_2122 PF02657 Fe-S metabolism associated domain EM6_2123 PF00989 PAS fold EM6_2123 PF00512 His Kinase A (phospho-acceptor) domain EM6_2123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2124 PF00512 His Kinase A (phospho-acceptor) domain EM6_2128 PF03006 Haemolysin-III related EM6_2130 PF16658 Class II release factor RF3, C-terminal domain EM6_2130 PF00009 Elongation factor Tu GTP binding domain EM6_2132 PF00072 Response regulator receiver domain EM6_2136 PF01717 Cobalamin-independent synthase, Catalytic domain EM6_2136 PF08267 Cobalamin-independent synthase, N-terminal domain EM6_2141 PF00331 Glycosyl hydrolase family 10 EM6_2142 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain EM6_2142 PF04616 Glycosyl hydrolases family 43 EM6_2145 PF13493 Domain of unknown function (DUF4118) EM6_2145 PF00512 His Kinase A (phospho-acceptor) domain EM6_2145 PF02702 Osmosensitive K+ channel His kinase sensor domain EM6_2145 PF13492 GAF domain EM6_2145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2146 PF02669 K+-transporting ATPase, c chain EM6_2148 PF03814 Potassium-transporting ATPase A subunit EM6_2151 PF00296 Luciferase-like monooxygenase EM6_2152 PF00296 Luciferase-like monooxygenase EM6_2155 PF00005 ABC transporter EM6_2156 PF00528 Binding-protein-dependent transport system inner membrane component EM6_2157 PF00528 Binding-protein-dependent transport system inner membrane component EM6_2160 PF00593 TonB dependent receptor EM6_2160 PF07715 TonB-dependent Receptor Plug Domain EM6_2162 PF01207 Dihydrouridine synthase (Dus) EM6_2167 PF00672 HAMP domain EM6_2167 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_2167 PF12729 Four helix bundle sensory module for signal transduction EM6_2170 PF00271 Helicase conserved C-terminal domain EM6_2170 PF12344 Ultra-violet resistance protein B EM6_2170 PF02151 UvrB/uvrC motif EM6_2170 PF17757 UvrB interaction domain EM6_2170 PF04851 Type III restriction enzyme, res subunit EM6_2175 PF02152 Dihydroneopterin aldolase EM6_2177 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_2179 PF01272 Transcription elongation factor, GreA/GreB, C-term EM6_2179 PF03449 Transcription elongation factor, N-terminal EM6_2183 PF01329 Pterin 4 alpha carbinolamine dehydratase EM6_2184 PF00351 Biopterin-dependent aromatic amino acid hydroxylase EM6_2189 PF00512 His Kinase A (phospho-acceptor) domain EM6_2189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2190 PF01339 CheB methylesterase EM6_2191 PF03705 CheR methyltransferase, all-alpha domain EM6_2191 PF01739 CheR methyltransferase, SAM binding domain EM6_2192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2192 PF00512 His Kinase A (phospho-acceptor) domain EM6_2192 PF01627 Hpt domain EM6_2192 PF00072 Response regulator receiver domain EM6_2193 PF00072 Response regulator receiver domain EM6_2193 PF00486 Transcriptional regulatory protein, C terminal EM6_2198 PF00924 Mechanosensitive ion channel EM6_2198 PF05552 Conserved TM helix EM6_2203 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EM6_2204 PF00589 Phage integrase family EM6_2204 PF02899 Phage integrase, N-terminal SAM-like domain EM6_2205 PF01202 Shikimate kinase EM6_2206 PF01761 3-dehydroquinate synthase EM6_2208 PF00873 AcrB/AcrD/AcrF family EM6_2209 PF13533 Biotin-lipoyl like EM6_2210 PF00440 Bacterial regulatory proteins, tetR family EM6_2211 PF04228 Putative neutral zinc metallopeptidase EM6_2215 PF00115 Cytochrome C and Quinol oxidase polypeptide I EM6_2218 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EM6_2218 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EM6_2219 PF13746 4Fe-4S dicluster domain EM6_2219 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EM6_2219 PF12801 4Fe-4S binding domain EM6_2222 PF00403 Heavy-metal-associated domain EM6_2223 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_2223 PF08447 PAS fold EM6_2223 PF13426 PAS domain EM6_2226 PF08362 YcdC-like protein, C-terminal region EM6_2226 PF00440 Bacterial regulatory proteins, tetR family EM6_2227 PF12697 Alpha/beta hydrolase family EM6_2228 PF00593 TonB dependent receptor EM6_2228 PF07715 TonB-dependent Receptor Plug Domain EM6_2231 PF01144 Coenzyme A transferase EM6_2232 PF01144 Coenzyme A transferase EM6_2235 PF01095 Pectinesterase EM6_2238 PF07690 Major Facilitator Superfamily EM6_2239 PF02687 FtsX-like permease family EM6_2239 PF12704 MacB-like periplasmic core domain EM6_2240 PF00005 ABC transporter EM6_2242 PF00158 Sigma-54 interaction domain EM6_2242 PF02954 Bacterial regulatory protein, Fis family EM6_2242 PF00072 Response regulator receiver domain EM6_2243 PF00989 PAS fold EM6_2243 PF00512 His Kinase A (phospho-acceptor) domain EM6_2243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2245 PF00375 Sodium:dicarboxylate symporter family EM6_2247 PF02743 Cache domain EM6_2247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2247 PF00512 His Kinase A (phospho-acceptor) domain EM6_2248 PF00072 Response regulator receiver domain EM6_2248 PF00158 Sigma-54 interaction domain EM6_2248 PF02954 Bacterial regulatory protein, Fis family EM6_2250 PF02929 Beta galactosidase small chain EM6_2250 PF00703 Glycosyl hydrolases family 2 EM6_2250 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_2250 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_2250 PF16353 Domain of unknown function(DUF4981) EM6_2251 PF00557 Metallopeptidase family M24 EM6_2251 PF01321 Creatinase/Prolidase N-terminal domain EM6_2252 PF01266 FAD dependent oxidoreductase EM6_2253 PF00701 Dihydrodipicolinate synthetase family EM6_2254 PF05544 Proline racemase EM6_2255 PF07729 FCD domain EM6_2255 PF00392 Bacterial regulatory proteins, gntR family EM6_2258 PF02469 Fasciclin domain EM6_2260 PF00990 Diguanylate cyclase, GGDEF domain EM6_2260 PF03707 Bacterial signalling protein N terminal repeat EM6_2260 PF00563 EAL domain EM6_2264 PF05443 ROS/MUCR transcriptional regulator protein EM6_2270 PF04820 Tryptophan halogenase EM6_2274 PF02321 Outer membrane efflux protein EM6_2275 PF00873 AcrB/AcrD/AcrF family EM6_2276 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EM6_2276 PF00529 HlyD membrane-fusion protein of T1SS EM6_2278 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_2278 PF00672 HAMP domain EM6_2279 PF12849 PBP superfamily domain EM6_2280 PF00528 Binding-protein-dependent transport system inner membrane component EM6_2281 PF00528 Binding-protein-dependent transport system inner membrane component EM6_2282 PF00005 ABC transporter EM6_2284 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EM6_2285 PF01070 FMN-dependent dehydrogenase EM6_2287 PF00356 Bacterial regulatory proteins, lacI family EM6_2290 PF01380 SIS domain EM6_2295 PF00246 Zinc carboxypeptidase EM6_2295 PF18027 Cytosolic carboxypeptidase N-terminal domain EM6_2300 PF02838 Glycosyl hydrolase family 20, domain 2 EM6_2300 PF03173 Putative carbohydrate binding domain EM6_2300 PF00728 Glycosyl hydrolase family 20, catalytic domain EM6_2301 PF00722 Glycosyl hydrolases family 16 EM6_2303 PF00593 TonB dependent receptor EM6_2303 PF07715 TonB-dependent Receptor Plug Domain EM6_2305 PF00356 Bacterial regulatory proteins, lacI family EM6_2310 PF00313 'Cold-shock' DNA-binding domain EM6_2311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_2311 PF03466 LysR substrate binding domain EM6_2314 PF07488 Glycosyl hydrolase family 67 middle domain EM6_2314 PF07477 Glycosyl hydrolase family 67 C-terminus EM6_2314 PF03648 Glycosyl hydrolase family 67 N-terminus EM6_2315 PF13378 Enolase C-terminal domain-like EM6_2315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EM6_2316 PF07729 FCD domain EM6_2316 PF00392 Bacterial regulatory proteins, gntR family EM6_2319 PF09383 NIL domain EM6_2319 PF00005 ABC transporter EM6_2320 PF00528 Binding-protein-dependent transport system inner membrane component EM6_2321 PF03180 NLPA lipoprotein EM6_2324 PF00999 Sodium/hydrogen exchanger family EM6_2325 PF04820 Tryptophan halogenase EM6_2326 PF00072 Response regulator receiver domain EM6_2327 PF00672 HAMP domain EM6_2327 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_2328 PF00072 Response regulator receiver domain EM6_2330 PF00360 Phytochrome region EM6_2330 PF08446 PAS fold EM6_2330 PF00512 His Kinase A (phospho-acceptor) domain EM6_2330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2330 PF01590 GAF domain EM6_2331 PF00072 Response regulator receiver domain EM6_2340 PF02615 Malate/L-lactate dehydrogenase EM6_2342 PF00593 TonB dependent receptor EM6_2342 PF07715 TonB-dependent Receptor Plug Domain EM6_2344 PF13520 Amino acid permease EM6_2345 PF00942 Cellulose binding domain EM6_2345 PF00331 Glycosyl hydrolase family 10 EM6_2345 PF00150 Cellulase (glycosyl hydrolase family 5) EM6_2347 PF13286 Phosphohydrolase-associated domain EM6_2347 PF01966 HD domain EM6_2348 PF05336 L-rhamnose mutarotase EM6_2349 PF00155 Aminotransferase class I and II EM6_2352 PF04209 homogentisate 1,2-dioxygenase EM6_2353 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EM6_2354 PF01263 Aldose 1-epimerase EM6_2355 PF07690 Major Facilitator Superfamily EM6_2357 PF00072 Response regulator receiver domain EM6_2357 PF00512 His Kinase A (phospho-acceptor) domain EM6_2357 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2357 PF09456 RcsC Alpha-Beta-Loop (ABL) EM6_2359 PF13417 Glutathione S-transferase, N-terminal domain EM6_2360 PF07690 Major Facilitator Superfamily EM6_2361 PF00034 Cytochrome c EM6_2362 PF03707 Bacterial signalling protein N terminal repeat EM6_2362 PF00563 EAL domain EM6_2362 PF00990 Diguanylate cyclase, GGDEF domain EM6_2366 PF07726 ATPase family associated with various cellular activities (AAA) EM6_2366 PF17863 AAA lid domain EM6_2371 PF08448 PAS fold EM6_2371 PF00990 Diguanylate cyclase, GGDEF domain EM6_2371 PF00563 EAL domain EM6_2372 PF00440 Bacterial regulatory proteins, tetR family EM6_2374 PF00563 EAL domain EM6_2374 PF00990 Diguanylate cyclase, GGDEF domain EM6_2374 PF03707 Bacterial signalling protein N terminal repeat EM6_2374 PF13188 PAS domain EM6_2375 PF00873 AcrB/AcrD/AcrF family EM6_2378 PF00005 ABC transporter EM6_2381 PF01553 Acyltransferase EM6_2386 PF07516 SecA Wing and Scaffold domain EM6_2386 PF01043 SecA preprotein cross-linking domain EM6_2386 PF07517 SecA DEAD-like domain EM6_2386 PF02810 SEC-C motif EM6_2387 PF13145 PPIC-type PPIASE domain EM6_2388 PF01960 ArgJ family EM6_2391 PF01850 PIN domain EM6_2392 PF00293 NUDIX domain EM6_2394 PF08241 Methyltransferase domain EM6_2396 PF00462 Glutaredoxin EM6_2397 PF00795 Carbon-nitrogen hydrolase EM6_2400 PF02683 Cytochrome C biogenesis protein transmembrane region EM6_2400 PF11412 Disulphide bond corrector protein DsbC EM6_2403 PF01494 FAD binding domain EM6_2408 PF03358 NADPH-dependent FMN reductase EM6_2410 PF03167 Uracil DNA glycosylase superfamily EM6_2412 PF01479 S4 domain EM6_2412 PF00849 RNA pseudouridylate synthase EM6_2413 PF00958 GMP synthase C terminal domain EM6_2413 PF00117 Glutamine amidotransferase class-I EM6_2413 PF13302 Acetyltransferase (GNAT) domain EM6_2413 PF13673 Acetyltransferase (GNAT) domain EM6_2413 PF03352 Methyladenine glycosylase EM6_2416 PF07715 TonB-dependent Receptor Plug Domain EM6_2416 PF00593 TonB dependent receptor EM6_2418 PF04542 Sigma-70 region 2 EM6_2418 PF08281 Sigma-70, region 4 EM6_2419 PF13439 Glycosyltransferase Family 4 EM6_2423 PF01264 Chorismate synthase EM6_2424 PF01556 DnaJ C terminal domain EM6_2424 PF00226 DnaJ domain EM6_2425 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EM6_2425 PF01243 Pyridoxamine 5'-phosphate oxidase EM6_2426 PF13419 Haloacid dehalogenase-like hydrolase EM6_2430 PF07715 TonB-dependent Receptor Plug Domain EM6_2430 PF00593 TonB dependent receptor EM6_2431 PF00471 Ribosomal protein L33 EM6_2432 PF17876 Cold shock domain EM6_2432 PF08461 Ribonuclease R winged-helix domain EM6_2432 PF08206 Ribonuclease B OB domain EM6_2432 PF00773 RNB domain EM6_2432 PF00575 S1 RNA binding domain EM6_2434 PF01687 Riboflavin kinase EM6_2434 PF06574 FAD synthetase EM6_2435 PF01575 MaoC like domain EM6_2436 PF00072 Response regulator receiver domain EM6_2437 PF04344 Chemotaxis phosphatase, CheZ EM6_2440 PF00563 EAL domain EM6_2440 PF12792 CSS motif domain associated with EAL EM6_2441 PF01339 CheB methylesterase EM6_2441 PF00072 Response regulator receiver domain EM6_2444 PF02601 Exonuclease VII, large subunit EM6_2444 PF13742 OB-fold nucleic acid binding domain EM6_2447 PF01396 Topoisomerase DNA binding C4 zinc finger EM6_2447 PF01131 DNA topoisomerase EM6_2447 PF01751 Toprim domain EM6_2447 PF13368 Topoisomerase C-terminal repeat EM6_2451 PF02481 DNA recombination-mediator protein A EM6_2451 PF17782 DprA winged helix domain EM6_2452 PF02660 Glycerol-3-phosphate acyltransferase EM6_2453 PF01979 Amidohydrolase family EM6_2454 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EM6_2454 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EM6_2455 PF08240 Alcohol dehydrogenase GroES-like domain EM6_2455 PF00107 Zinc-binding dehydrogenase EM6_2457 PF03652 Holliday junction resolvase EM6_2460 PF02686 Glu-tRNAGln amidotransferase C subunit EM6_2461 PF01425 Amidase EM6_2465 PF05656 Protein of unknown function (DUF805) EM6_2466 PF13340 Putative transposase of IS4/5 family (DUF4096) EM6_2468 PF13356 Arm DNA-binding domain EM6_2468 PF00589 Phage integrase family EM6_2481 PF01625 Peptide methionine sulfoxide reductase EM6_2482 PF03853 YjeF-related protein N-terminus EM6_2482 PF01256 Carbohydrate kinase EM6_2490 PF00154 recA bacterial DNA recombination protein EM6_2491 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EM6_2491 PF01411 tRNA synthetases class II (A) EM6_2491 PF02272 DHHA1 domain EM6_2493 PF01169 Uncharacterized protein family UPF0016 EM6_2497 PF15887 Putative zinc-binding metallo-peptidase EM6_2497 PF10005 zinc-ribbon domain EM6_2498 PF17996 Carbohydrate esterase 2 N-terminal EM6_2498 PF13472 GDSL-like Lipase/Acylhydrolase family EM6_2499 PF00180 Isocitrate/isopropylmalate dehydrogenase EM6_2501 PF00588 SpoU rRNA Methylase family EM6_2508 PF06964 Alpha-L-arabinofuranosidase C-terminal domain EM6_2509 PF02358 Trehalose-phosphatase EM6_2510 PF00723 Glycosyl hydrolases family 15 EM6_2511 PF00982 Glycosyltransferase family 20 EM6_2512 PF02525 Flavodoxin-like fold EM6_2513 PF02678 Pirin EM6_2513 PF05726 Pirin C-terminal cupin domain EM6_2514 PF03466 LysR substrate binding domain EM6_2514 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_2516 PF01425 Amidase EM6_2518 PF07687 Peptidase dimerisation domain EM6_2518 PF01546 Peptidase family M20/M25/M40 EM6_2519 PF00266 Aminotransferase class-V EM6_2523 PF13454 FAD-NAD(P)-binding EM6_2524 PF00576 HIUase/Transthyretin family EM6_2525 PF03450 CO dehydrogenase flavoprotein C-terminal domain EM6_2525 PF00941 FAD binding domain in molybdopterin dehydrogenase EM6_2526 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EM6_2526 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EM6_2528 PF00962 Adenosine/AMP deaminase EM6_2529 PF01979 Amidohydrolase family EM6_2531 PF01521 Iron-sulphur cluster biosynthesis EM6_2532 PF13286 Phosphohydrolase-associated domain EM6_2532 PF01966 HD domain EM6_2533 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EM6_2534 PF00563 EAL domain EM6_2534 PF03707 Bacterial signalling protein N terminal repeat EM6_2534 PF00990 Diguanylate cyclase, GGDEF domain EM6_2535 PF00731 AIR carboxylase EM6_2536 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EM6_2536 PF02222 ATP-grasp domain EM6_2538 PF01165 Ribosomal protein S21 EM6_2539 PF03061 Thioesterase superfamily EM6_2546 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EM6_2550 PF01618 MotA/TolQ/ExbB proton channel family EM6_2552 PF01266 FAD dependent oxidoreductase EM6_2552 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EM6_2557 PF06421 GTP-binding protein LepA C-terminus EM6_2557 PF00679 Elongation factor G C-terminus EM6_2557 PF00009 Elongation factor Tu GTP binding domain EM6_2557 PF03144 Elongation factor Tu domain 2 EM6_2562 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EM6_2562 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EM6_2568 PF04616 Glycosyl hydrolases family 43 EM6_2568 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain EM6_2569 PF00657 GDSL-like Lipase/Acylhydrolase EM6_2570 PF01095 Pectinesterase EM6_2572 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_2572 PF00703 Glycosyl hydrolases family 2 EM6_2572 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 EM6_2572 PF16355 Domain of unknown function (DUF4982) EM6_2572 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_2574 PF07690 Major Facilitator Superfamily EM6_2575 PF00072 Response regulator receiver domain EM6_2575 PF01339 CheB methylesterase EM6_2577 PF18267 Rubredoxin NAD+ reductase C-terminal domain EM6_2577 PF04324 BFD-like [2Fe-2S] binding domain EM6_2577 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EM6_2577 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EM6_2577 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_2579 PF01568 Molydopterin dinucleotide binding domain EM6_2579 PF04324 BFD-like [2Fe-2S] binding domain EM6_2579 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EM6_2579 PF00384 Molybdopterin oxidoreductase EM6_2580 PF00005 ABC transporter EM6_2581 PF00528 Binding-protein-dependent transport system inner membrane component EM6_2587 PF00072 Response regulator receiver domain EM6_2587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2588 PF00158 Sigma-54 interaction domain EM6_2588 PF00072 Response regulator receiver domain EM6_2588 PF02954 Bacterial regulatory protein, Fis family EM6_2589 PF01229 Glycosyl hydrolases family 39 EM6_2592 PF13004 Putative binding domain, N-terminal EM6_2592 PF00150 Cellulase (glycosyl hydrolase family 5) EM6_2593 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_2593 PF16355 Domain of unknown function (DUF4982) EM6_2593 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_2593 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 EM6_2593 PF00703 Glycosyl hydrolases family 2 EM6_2594 PF02678 Pirin EM6_2594 PF05726 Pirin C-terminal cupin domain EM6_2600 PF04452 RNA methyltransferase EM6_2601 PF04107 Glutamate-cysteine ligase family 2(GCS2) EM6_2602 PF00854 POT family EM6_2604 PF01523 Putative modulator of DNA gyrase EM6_2605 PF02790 Cytochrome C oxidase subunit II, transmembrane domain EM6_2605 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EM6_2606 PF00115 Cytochrome C and Quinol oxidase polypeptide I EM6_2607 PF01040 UbiA prenyltransferase family EM6_2609 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 EM6_2610 PF00510 Cytochrome c oxidase subunit III EM6_2612 PF02104 SURF1 family EM6_2613 PF00675 Insulinase (Peptidase family M16) EM6_2613 PF05193 Peptidase M16 inactive domain EM6_2614 PF03009 Glycerophosphoryl diester phosphodiesterase family EM6_2615 PF02622 Uncharacterized ACR, COG1678 EM6_2616 PF08534 Redoxin EM6_2616 PF00462 Glutaredoxin EM6_2617 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EM6_2617 PF12806 Acetyl-CoA dehydrogenase C-terminal like EM6_2617 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EM6_2617 PF02770 Acyl-CoA dehydrogenase, middle domain EM6_2618 PF09278 MerR, DNA binding EM6_2618 PF00376 MerR family regulatory protein EM6_2619 PF01921 tRNA synthetases class I (K) EM6_2624 PF06508 Queuosine biosynthesis protein QueC EM6_2626 PF02541 Ppx/GppA phosphatase family EM6_2630 PF01702 Queuine tRNA-ribosyltransferase EM6_2632 PF00155 Aminotransferase class I and II EM6_2633 PF02547 Queuosine biosynthesis protein EM6_2635 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EM6_2636 PF01728 FtsJ-like methyltransferase EM6_2642 PF00478 IMP dehydrogenase / GMP reductase domain EM6_2642 PF00571 CBS domain EM6_2644 PF01189 16S rRNA methyltransferase RsmB/F EM6_2644 PF01029 NusB family EM6_2646 PF00958 GMP synthase C terminal domain EM6_2646 PF00117 Glutamine amidotransferase class-I EM6_2646 PF02540 NAD synthase EM6_2647 PF00589 Phage integrase family EM6_2647 PF13356 Arm DNA-binding domain EM6_2650 PF01695 IstB-like ATP binding protein EM6_2652 PF07969 Amidohydrolase family EM6_2653 PF00593 TonB dependent receptor EM6_2653 PF07715 TonB-dependent Receptor Plug Domain EM6_2654 PF01112 Asparaginase EM6_2656 PF03358 NADPH-dependent FMN reductase EM6_2658 PF03960 ArsC family EM6_2660 PF04542 Sigma-70 region 2 EM6_2660 PF08281 Sigma-70, region 4 EM6_2662 PF02548 Ketopantoate hydroxymethyltransferase EM6_2665 PF01926 50S ribosome-binding GTPase EM6_2665 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EM6_2667 PF02567 Phenazine biosynthesis-like protein EM6_2668 PF00202 Aminotransferase class-III EM6_2670 PF13537 Glutamine amidotransferase domain EM6_2670 PF00156 Phosphoribosyl transferase domain EM6_2672 PF18073 Rubredoxin metal binding domain EM6_2672 PF06745 KaiC EM6_2673 PF00772 DnaB-like helicase N terminal domain EM6_2673 PF03796 DnaB-like helicase C terminal domain EM6_2676 PF00593 TonB dependent receptor EM6_2676 PF07715 TonB-dependent Receptor Plug Domain EM6_2680 PF08241 Methyltransferase domain EM6_2681 PF00375 Sodium:dicarboxylate symporter family EM6_2682 PF05697 Bacterial trigger factor protein (TF) EM6_2682 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EM6_2682 PF05698 Bacterial trigger factor protein (TF) C-terminus EM6_2684 PF00574 Clp protease EM6_2686 PF07724 AAA domain (Cdc48 subfamily) EM6_2686 PF10431 C-terminal, D2-small domain, of ClpB protein EM6_2686 PF06689 ClpX C4-type zinc finger EM6_2687 PF13426 PAS domain EM6_2687 PF08447 PAS fold EM6_2687 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_2690 PF01435 Peptidase family M48 EM6_2691 PF00575 S1 RNA binding domain EM6_2691 PF12111 Polyribonucleotide phosphorylase C terminal EM6_2691 PF10150 Ribonuclease E/G family EM6_2693 PF11741 AMIN domain EM6_2693 PF01520 N-acetylmuramoyl-L-alanine amidase EM6_2694 PF00034 Cytochrome c EM6_2696 PF01212 Beta-eliminating lyase EM6_2698 PF02190 ATP-dependent protease La (LON) substrate-binding domain EM6_2698 PF00004 ATPase family associated with various cellular activities (AAA) EM6_2698 PF05362 Lon protease (S16) C-terminal proteolytic domain EM6_2699 PF00216 Bacterial DNA-binding protein EM6_2705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EM6_2706 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EM6_2707 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EM6_2708 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EM6_2711 PF10531 SLBB domain EM6_2711 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EM6_2711 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EM6_2712 PF05154 TM2 domain EM6_2713 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal EM6_2713 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EM6_2713 PF00384 Molybdopterin oxidoreductase EM6_2714 PF00146 NADH dehydrogenase EM6_2715 PF12838 4Fe-4S dicluster domain EM6_2716 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EM6_2717 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EM6_2718 PF00361 Proton-conducting membrane transporter EM6_2718 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EM6_2719 PF00361 Proton-conducting membrane transporter EM6_2719 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus EM6_2720 PF00361 Proton-conducting membrane transporter EM6_2721 PF02237 Biotin protein ligase C terminal domain EM6_2721 PF03099 Biotin/lipoate A/B protein ligase family EM6_2722 PF03309 Type III pantothenate kinase EM6_2723 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EM6_2723 PF12706 Beta-lactamase superfamily domain EM6_2723 PF17770 Ribonuclease J C-terminal domain EM6_2724 PF00561 alpha/beta hydrolase fold EM6_2724 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus EM6_2726 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded EM6_2727 PF02272 DHHA1 domain EM6_2727 PF17768 RecJ OB domain EM6_2727 PF10141 Single-strand DNA-specific exonuclease, C terminal domain EM6_2727 PF01368 DHH family EM6_2730 PF00313 'Cold-shock' DNA-binding domain EM6_2734 PF03734 L,D-transpeptidase catalytic domain EM6_2738 PF02628 Cytochrome oxidase assembly protein EM6_2740 PF00572 Ribosomal protein L13 EM6_2741 PF00380 Ribosomal protein S9/S16 EM6_2742 PF01118 Semialdehyde dehydrogenase, NAD binding domain EM6_2745 PF03129 Anticodon binding domain EM6_2745 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EM6_2746 PF02687 FtsX-like permease family EM6_2746 PF12704 MacB-like periplasmic core domain EM6_2747 PF00005 ABC transporter EM6_2749 PF02811 PHP domain EM6_2749 PF14579 Helix-hairpin-helix motif EM6_2749 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EM6_2749 PF07733 Bacterial DNA polymerase III alpha NTPase domain EM6_2750 PF00318 Ribosomal protein S2 EM6_2751 PF00889 Elongation factor TS EM6_2752 PF00696 Amino acid kinase family EM6_2753 PF01765 Ribosome recycling factor EM6_2754 PF01255 Putative undecaprenyl diphosphate synthase EM6_2756 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EM6_2756 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EM6_2756 PF13288 DXP reductoisomerase C-terminal domain EM6_2757 PF13180 PDZ domain EM6_2757 PF02163 Peptidase family M50 EM6_2758 PF07244 Surface antigen variable number repeat EM6_2758 PF01103 Surface antigen EM6_2760 PF00132 Bacterial transferase hexapeptide (six repeats) EM6_2760 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EM6_2761 PF07977 FabA-like domain EM6_2762 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EM6_2762 PF00132 Bacterial transferase hexapeptide (six repeats) EM6_2764 PF00144 Beta-lactamase EM6_2764 PF11954 Domain of unknown function (DUF3471) EM6_2765 PF00285 Citrate synthase, C-terminal domain EM6_2766 PF00753 Metallo-beta-lactamase superfamily EM6_2766 PF03772 Competence protein EM6_2767 PF00717 Peptidase S24-like EM6_2767 PF01726 LexA DNA binding domain EM6_2768 PF00218 Indole-3-glycerol phosphate synthase EM6_2769 PF00591 Glycosyl transferase family, a/b domain EM6_2769 PF02885 Glycosyl transferase family, helical bundle domain EM6_2770 PF00117 Glutamine amidotransferase class-I EM6_2771 PF01301 Glycosyl hydrolases family 35 EM6_2772 PF01926 50S ribosome-binding GTPase EM6_2772 PF13167 GTP-binding GTPase N-terminal EM6_2772 PF16360 GTP-binding GTPase Middle Region EM6_2773 PF17209 Hfq protein EM6_2774 PF01063 Amino-transferase class IV EM6_2775 PF02954 Bacterial regulatory protein, Fis family EM6_2775 PF00158 Sigma-54 interaction domain EM6_2775 PF00072 Response regulator receiver domain EM6_2776 PF00672 HAMP domain EM6_2776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2776 PF00989 PAS fold EM6_2776 PF00512 His Kinase A (phospho-acceptor) domain EM6_2777 PF01207 Dihydrouridine synthase (Dus) EM6_2778 PF02542 YgbB family EM6_2778 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EM6_2779 PF03099 Biotin/lipoate A/B protein ligase family EM6_2779 PF12706 Beta-lactamase superfamily domain EM6_2780 PF01026 TatD related DNase EM6_2781 PF09115 DNA polymerase III, delta subunit, C terminal EM6_2782 PF02223 Thymidylate kinase EM6_2783 PF05036 Sporulation related domain EM6_2783 PF03330 Lytic transglycolase EM6_2790 PF17757 UvrB interaction domain EM6_2790 PF02559 CarD-like/TRCF domain EM6_2790 PF00270 DEAD/DEAH box helicase EM6_2790 PF03461 TRCF domain EM6_2790 PF00271 Helicase conserved C-terminal domain EM6_2791 PF03937 Flavinator of succinate dehydrogenase EM6_2792 PF00271 Helicase conserved C-terminal domain EM6_2792 PF17191 RecG wedge domain EM6_2792 PF00270 DEAD/DEAH box helicase EM6_2795 PF00535 Glycosyl transferase family 2 EM6_2796 PF03441 FAD binding domain of DNA photolyase EM6_2796 PF00875 DNA photolyase EM6_2797 PF00581 Rhodanese-like domain EM6_2798 PF00497 Bacterial extracellular solute-binding proteins, family 3 EM6_2801 PF01042 Endoribonuclease L-PSP EM6_2802 PF00117 Glutamine amidotransferase class-I EM6_2802 PF06418 CTP synthase N-terminus EM6_2804 PF00121 Triosephosphate isomerase EM6_2806 PF04715 Anthranilate synthase component I, N terminal region EM6_2806 PF00425 chorismate binding enzyme EM6_2808 PF00999 Sodium/hydrogen exchanger family EM6_2808 PF02254 TrkA-N domain EM6_2810 PF03819 MazG nucleotide pyrophosphohydrolase domain EM6_2811 PF07676 WD40-like Beta Propeller Repeat EM6_2814 PF00005 ABC transporter EM6_2815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EM6_2815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EM6_2816 PF00994 Probable molybdopterin binding domain EM6_2816 PF18146 Damage-inducible protein CinA KH domain EM6_2816 PF02464 Competence-damaged protein EM6_2817 PF03364 Polyketide cyclase / dehydrase and lipid transport EM6_2818 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EM6_2818 PF04055 Radical SAM superfamily EM6_2820 PF01553 Acyltransferase EM6_2820 PF00501 AMP-binding enzyme EM6_2822 PF07715 TonB-dependent Receptor Plug Domain EM6_2822 PF00593 TonB dependent receptor EM6_2824 PF07992 Pyridine nucleotide-disulphide oxidoreductase EM6_2824 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EM6_2825 PF00364 Biotin-requiring enzyme EM6_2825 PF02817 e3 binding domain EM6_2825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EM6_2826 PF00364 Biotin-requiring enzyme EM6_2826 PF02779 Transketolase, pyrimidine binding domain EM6_2826 PF02780 Transketolase, C-terminal domain EM6_2827 PF00676 Dehydrogenase E1 component EM6_2828 PF04977 Septum formation initiator EM6_2829 PF03952 Enolase, N-terminal domain EM6_2829 PF00113 Enolase, C-terminal TIM barrel domain EM6_2830 PF13419 Haloacid dehalogenase-like hydrolase EM6_2831 PF01783 Ribosomal L32p protein family EM6_2835 PF13411 MerR HTH family regulatory protein EM6_2836 PF00216 Bacterial DNA-binding protein EM6_2837 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EM6_2837 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EM6_2838 PF02504 Fatty acid synthesis protein EM6_2843 PF03030 Inorganic H+ pyrophosphatase EM6_2845 PF02769 AIR synthase related protein, C-terminal domain EM6_2845 PF00586 AIR synthase related protein, N-terminal domain EM6_2846 PF01029 NusB family EM6_2847 PF00885 6,7-dimethyl-8-ribityllumazine synthase EM6_2848 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EM6_2848 PF00925 GTP cyclohydrolase II EM6_2849 PF00677 Lumazine binding domain EM6_2850 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EM6_2850 PF01872 RibD C-terminal domain EM6_2851 PF03477 ATP cone domain EM6_2853 PF00464 Serine hydroxymethyltransferase EM6_2856 PF00155 Aminotransferase class I and II EM6_2858 PF00490 Delta-aminolevulinic acid dehydratase EM6_2860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EM6_2860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EM6_2861 PF01613 Flavin reductase like domain EM6_2862 PF13677 Membrane MotB of proton-channel complex MotA/MotB EM6_2862 PF00691 OmpA family EM6_2863 PF04376 Arginine-tRNA-protein transferase, N terminus EM6_2863 PF04377 Arginine-tRNA-protein transferase, C terminus EM6_2864 PF06055 Exopolysaccharide synthesis, ExoD EM6_2865 PF00521 DNA gyrase/topoisomerase IV, subunit A EM6_2865 PF03989 DNA gyrase C-terminal domain, beta-propeller EM6_2868 PF02565 Recombination protein O C terminal EM6_2868 PF11967 Recombination protein O N terminal EM6_2869 PF01926 50S ribosome-binding GTPase EM6_2869 PF07650 KH domain EM6_2870 PF14622 Ribonuclease-III-like EM6_2870 PF00035 Double-stranded RNA binding motif EM6_2871 PF10502 Signal peptidase, peptidase S26 EM6_2872 PF01648 4'-phosphopantetheinyl transferase superfamily EM6_2873 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EM6_2874 PF00156 Phosphoribosyl transferase domain EM6_2877 PF02824 TGS domain EM6_2877 PF04607 Region found in RelA / SpoT proteins EM6_2877 PF13291 ACT domain EM6_2879 PF01192 RNA polymerase Rpb6 EM6_2881 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EM6_2883 PF01668 SmpB protein EM6_2884 PF00701 Dihydrodipicolinate synthetase family EM6_2885 PF01464 Transglycosylase SLT domain EM6_2885 PF14718 Soluble lytic murein transglycosylase L domain EM6_2886 PF00005 ABC transporter EM6_2887 PF01032 FecCD transport family EM6_2890 PF10672 S-adenosylmethionine-dependent methyltransferase EM6_2890 PF02926 THUMP domain EM6_2890 PF01170 Putative RNA methylase family UPF0020 EM6_2891 PF08032 RNA 2'-O ribose methyltransferase substrate binding EM6_2891 PF00588 SpoU rRNA Methylase family EM6_2895 PF08482 ATP-dependent helicase C-terminal EM6_2895 PF04408 Helicase associated domain (HA2) EM6_2895 PF00270 DEAD/DEAH box helicase EM6_2895 PF00271 Helicase conserved C-terminal domain EM6_2896 PF13520 Amino acid permease EM6_2897 PF00753 Metallo-beta-lactamase superfamily EM6_2900 PF04998 RNA polymerase Rpb1, domain 5 EM6_2900 PF05000 RNA polymerase Rpb1, domain 4 EM6_2900 PF04983 RNA polymerase Rpb1, domain 3 EM6_2900 PF00623 RNA polymerase Rpb1, domain 2 EM6_2900 PF04997 RNA polymerase Rpb1, domain 1 EM6_2901 PF04565 RNA polymerase Rpb2, domain 3 EM6_2901 PF04560 RNA polymerase Rpb2, domain 7 EM6_2901 PF00562 RNA polymerase Rpb2, domain 6 EM6_2901 PF10385 RNA polymerase beta subunit external 1 domain EM6_2901 PF04561 RNA polymerase Rpb2, domain 2 EM6_2901 PF04563 RNA polymerase beta subunit EM6_2904 PF03462 PCRF domain EM6_2904 PF00472 RF-1 domain EM6_2905 PF17092 Penicillin-binding protein OB-like domain EM6_2905 PF00905 Penicillin binding protein transpeptidase domain EM6_2905 PF00912 Transglycosylase EM6_2907 PF00625 Guanylate kinase EM6_2908 PF08340 Domain of unknown function (DUF1732) EM6_2908 PF03755 YicC-like family, N-terminal region EM6_2909 PF02618 YceG-like family EM6_2910 PF02801 Beta-ketoacyl synthase, C-terminal domain EM6_2910 PF00109 Beta-ketoacyl synthase, N-terminal domain EM6_2911 PF00550 Phosphopantetheine attachment site EM6_2913 PF00698 Acyl transferase domain EM6_2914 PF12146 Serine aminopeptidase, S33 EM6_2915 PF00578 AhpC/TSA family EM6_2916 PF01250 Ribosomal protein S6 EM6_2917 PF01084 Ribosomal protein S18 EM6_2918 PF03948 Ribosomal protein L9, C-terminal domain EM6_2918 PF01281 Ribosomal protein L9, N-terminal domain EM6_2920 PF00543 Nitrogen regulatory protein P-II EM6_2921 PF00120 Glutamine synthetase, catalytic domain EM6_2921 PF03951 Glutamine synthetase, beta-Grasp domain EM6_2922 PF00909 Ammonium Transporter Family EM6_2925 PF00204 DNA gyrase B EM6_2925 PF00986 DNA gyrase B subunit, carboxyl terminus EM6_2925 PF01751 Toprim domain EM6_2925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_2926 PF00270 DEAD/DEAH box helicase EM6_2926 PF00271 Helicase conserved C-terminal domain EM6_2927 PF00990 Diguanylate cyclase, GGDEF domain EM6_2931 PF01521 Iron-sulphur cluster biosynthesis EM6_2932 PF01883 Iron-sulfur cluster assembly protein EM6_2933 PF00266 Aminotransferase class-V EM6_2934 PF01458 Uncharacterized protein family (UPF0051) EM6_2935 PF00005 ABC transporter EM6_2937 PF01458 Uncharacterized protein family (UPF0051) EM6_2938 PF00266 Aminotransferase class-V EM6_2939 PF02082 Transcriptional regulator EM6_2940 PF02129 X-Pro dipeptidyl-peptidase (S15 family) EM6_2941 PF03702 Anhydro-N-acetylmuramic acid kinase EM6_2942 PF00579 tRNA synthetases class I (W and Y) EM6_2944 PF00578 AhpC/TSA family EM6_2945 PF01476 LysM domain EM6_2945 PF08525 Opacity-associated protein A N-terminal motif EM6_2945 PF01551 Peptidase family M23 EM6_2949 PF16320 Ribosomal protein L7/L12 dimerisation domain EM6_2949 PF00542 Ribosomal protein L7/L12 C-terminal domain EM6_2950 PF00466 Ribosomal protein L10 EM6_2951 PF01965 DJ-1/PfpI family EM6_2951 PF12833 Helix-turn-helix domain EM6_2952 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EM6_2954 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EM6_2955 PF00687 Ribosomal protein L1p/L10e family EM6_2956 PF00298 Ribosomal protein L11, RNA binding domain EM6_2956 PF03946 Ribosomal protein L11, N-terminal domain EM6_2958 PF02357 Transcription termination factor nusG EM6_2958 PF00467 KOW motif EM6_2959 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EM6_2963 PF00326 Prolyl oligopeptidase family EM6_2963 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EM6_2964 PF04304 Protein of unknown function (DUF454) EM6_2965 PF05656 Protein of unknown function (DUF805) EM6_2966 PF01738 Dienelactone hydrolase family EM6_2967 PF03741 Integral membrane protein TerC family EM6_2968 PF08032 RNA 2'-O ribose methyltransferase substrate binding EM6_2968 PF00588 SpoU rRNA Methylase family EM6_2971 PF05656 Protein of unknown function (DUF805) EM6_2972 PF09334 tRNA synthetases class I (M) EM6_2976 PF05690 Thiazole biosynthesis protein ThiG EM6_2977 PF05690 Thiazole biosynthesis protein ThiG EM6_2977 PF02597 ThiS family EM6_2978 PF01220 Dehydroquinase class II EM6_2979 PF00364 Biotin-requiring enzyme EM6_2980 PF02785 Biotin carboxylase C-terminal domain EM6_2980 PF00289 Biotin carboxylase, N-terminal domain EM6_2980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EM6_2983 PF02867 Ribonucleotide reductase, barrel domain EM6_2983 PF08471 Class II vitamin B12-dependent ribonucleotide reductase EM6_2984 PF02774 Semialdehyde dehydrogenase, dimerisation domain EM6_2984 PF01118 Semialdehyde dehydrogenase, NAD binding domain EM6_2986 PF01336 OB-fold nucleic acid binding domain EM6_2986 PF00152 tRNA synthetases class II (D, K and N) EM6_2986 PF02938 GAD domain EM6_2988 PF02503 Polyphosphate kinase middle domain EM6_2988 PF13089 Polyphosphate kinase N-terminal domain EM6_2988 PF17941 Polyphosphate kinase C-terminal domain 1 EM6_2988 PF13090 Polyphosphate kinase C-terminal domain 2 EM6_2989 PF02541 Ppx/GppA phosphatase family EM6_2990 PF10459 Peptidase S46 EM6_2991 PF00551 Formyl transferase EM6_2992 PF02769 AIR synthase related protein, C-terminal domain EM6_2992 PF00586 AIR synthase related protein, N-terminal domain EM6_2993 PF00570 HRDC domain EM6_2993 PF01612 3'-5' exonuclease EM6_2994 PF00334 Nucleoside diphosphate kinase EM6_2995 PF00005 ABC transporter EM6_2995 PF12848 ABC transporter EM6_2998 PF02789 Cytosol aminopeptidase family, N-terminal domain EM6_2998 PF00883 Cytosol aminopeptidase family, catalytic domain EM6_3002 PF09312 SurA N-terminal domain EM6_3002 PF00639 PPIC-type PPIASE domain EM6_3003 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EM6_3006 PF00596 Class II Aldolase and Adducin N-terminal domain EM6_3008 PF16200 C-terminal region of band_7 EM6_3008 PF01145 SPFH domain / Band 7 family EM6_3009 PF00293 NUDIX domain EM6_3010 PF01565 FAD binding domain EM6_3010 PF02913 FAD linked oxidases, C-terminal domain EM6_3011 PF00486 Transcriptional regulatory protein, C terminal EM6_3011 PF00072 Response regulator receiver domain EM6_3012 PF03883 Peroxide stress protein YaaA EM6_3013 PF01300 Telomere recombination EM6_3013 PF03481 Putative GTP-binding controlling metal-binding EM6_3014 PF01292 Prokaryotic cytochrome b561 EM6_3015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EM6_3015 PF12806 Acetyl-CoA dehydrogenase C-terminal like EM6_3015 PF02770 Acyl-CoA dehydrogenase, middle domain EM6_3015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EM6_3017 PF00326 Prolyl oligopeptidase family EM6_3017 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EM6_3020 PF07943 Penicillin-binding protein 5, C-terminal domain EM6_3020 PF00768 D-alanyl-D-alanine carboxypeptidase EM6_3022 PF13614 AAA domain EM6_3023 PF00557 Metallopeptidase family M24 EM6_3024 PF04002 RadC-like JAB domain EM6_3025 PF01794 Ferric reductase like transmembrane component EM6_3026 PF00174 Oxidoreductase molybdopterin binding domain EM6_3028 PF07679 Immunoglobulin I-set domain EM6_3028 PF00759 Glycosyl hydrolase family 9 EM6_3028 PF02927 Cellulase N-terminal ig-like domain EM6_3028 PF02018 Carbohydrate binding domain EM6_3029 PF00206 Lyase EM6_3029 PF10397 Adenylosuccinate lyase C-terminus EM6_3032 PF01259 SAICAR synthetase EM6_3033 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase EM6_3035 PF00561 alpha/beta hydrolase fold EM6_3038 PF02769 AIR synthase related protein, C-terminal domain EM6_3038 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EM6_3038 PF00586 AIR synthase related protein, N-terminal domain EM6_3042 PF00462 Glutaredoxin EM6_3043 PF01479 S4 domain EM6_3043 PF00163 Ribosomal protein S4/S9 N-terminal domain EM6_3044 PF01595 Cyclin M transmembrane N-terminal domain EM6_3044 PF03471 Transporter associated domain EM6_3044 PF00571 CBS domain EM6_3046 PF00756 Putative esterase EM6_3048 PF00107 Zinc-binding dehydrogenase EM6_3048 PF08240 Alcohol dehydrogenase GroES-like domain EM6_3049 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_3050 PF03167 Uracil DNA glycosylase superfamily EM6_3051 PF00080 Copper/zinc superoxide dismutase (SODC) EM6_3052 PF00849 RNA pseudouridylate synthase EM6_3056 PF00326 Prolyl oligopeptidase family EM6_3058 PF00255 Glutathione peroxidase EM6_3059 PF01381 Helix-turn-helix EM6_3061 PF17954 Quercetinase C-terminal cupin domain EM6_3061 PF02678 Pirin EM6_3064 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EM6_3065 PF01467 Cytidylyltransferase-like EM6_3066 PF03989 DNA gyrase C-terminal domain, beta-propeller EM6_3066 PF00521 DNA gyrase/topoisomerase IV, subunit A EM6_3067 PF00436 Single-strand binding protein family EM6_3071 PF00700 Bacterial flagellin C-terminal helical region EM6_3071 PF00669 Bacterial flagellin N-terminal helical region EM6_3073 PF00700 Bacterial flagellin C-terminal helical region EM6_3073 PF00669 Bacterial flagellin N-terminal helical region EM6_3074 PF00700 Bacterial flagellin C-terminal helical region EM6_3074 PF00669 Bacterial flagellin N-terminal helical region EM6_3075 PF07309 Flagellar protein FlaF EM6_3076 PF07378 Flagellar protein FlbT EM6_3079 PF01966 HD domain EM6_3081 PF00829 Ribosomal prokaryotic L21 protein EM6_3083 PF00391 PEP-utilising enzyme, mobile domain EM6_3083 PF02896 PEP-utilising enzyme, TIM barrel domain EM6_3083 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EM6_3084 PF02092 Glycyl-tRNA synthetase beta subunit EM6_3084 PF05746 DALR anticodon binding domain EM6_3085 PF02091 Glycyl-tRNA synthetase alpha subunit EM6_3088 PF08544 GHMP kinases C terminal EM6_3093 PF00535 Glycosyl transferase family 2 EM6_3094 PF05958 tRNA (Uracil-5-)-methyltransferase EM6_3096 PF00535 Glycosyl transferase family 2 EM6_3100 PF08264 Anticodon-binding domain of tRNA EM6_3100 PF00133 tRNA synthetases class I (I, L, M and V) EM6_3100 PF10458 Valyl tRNA synthetase tRNA binding arm EM6_3105 PF17200 Single Cache domain 2 EM6_3105 PF00672 HAMP domain EM6_3105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_3107 PF00990 Diguanylate cyclase, GGDEF domain EM6_3107 PF00072 Response regulator receiver domain EM6_3108 PF00072 Response regulator receiver domain EM6_3112 PF13419 Haloacid dehalogenase-like hydrolase EM6_3113 PF00849 RNA pseudouridylate synthase EM6_3113 PF01479 S4 domain EM6_3114 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EM6_3115 PF01230 HIT domain EM6_3116 PF00300 Histidine phosphatase superfamily (branch 1) EM6_3119 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EM6_3119 PF18029 Glyoxalase-like domain EM6_3120 PF00296 Luciferase-like monooxygenase EM6_3122 PF02397 Bacterial sugar transferase EM6_3135 PF13732 Domain of unknown function (DUF4162) EM6_3135 PF00005 ABC transporter EM6_3136 PF02934 GatB/GatE catalytic domain EM6_3136 PF02637 GatB domain EM6_3139 PF13492 GAF domain EM6_3139 PF07730 Histidine kinase EM6_3139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_3140 PF00072 Response regulator receiver domain EM6_3140 PF00196 Bacterial regulatory proteins, luxR family EM6_3143 PF07715 TonB-dependent Receptor Plug Domain EM6_3143 PF00593 TonB dependent receptor EM6_3146 PF03169 OPT oligopeptide transporter protein EM6_3147 PF00593 TonB dependent receptor EM6_3147 PF07715 TonB-dependent Receptor Plug Domain EM6_3151 PF02254 TrkA-N domain EM6_3151 PF00999 Sodium/hydrogen exchanger family EM6_3152 PF01431 Peptidase family M13 EM6_3152 PF05649 Peptidase family M13 EM6_3155 PF03129 Anticodon binding domain EM6_3155 PF13393 Histidyl-tRNA synthetase EM6_3157 PF17827 PrmC N-terminal domain EM6_3157 PF13847 Methyltransferase domain EM6_3158 PF08241 Methyltransferase domain EM6_3159 PF01842 ACT domain EM6_3159 PF00696 Amino acid kinase family EM6_3159 PF13840 ACT domain EM6_3160 PF00391 PEP-utilising enzyme, mobile domain EM6_3160 PF02896 PEP-utilising enzyme, TIM barrel domain EM6_3160 PF05524 PEP-utilising enzyme, N-terminal EM6_3164 PF03707 Bacterial signalling protein N terminal repeat EM6_3164 PF13188 PAS domain EM6_3164 PF00563 EAL domain EM6_3164 PF00990 Diguanylate cyclase, GGDEF domain EM6_3165 PF01523 Putative modulator of DNA gyrase EM6_3166 PF00459 Inositol monophosphatase family EM6_3170 PF00005 ABC transporter EM6_3170 PF00664 ABC transporter transmembrane region EM6_3172 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EM6_3173 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EM6_3175 PF02843 Phosphoribosylglycinamide synthetase, C domain EM6_3175 PF02844 Phosphoribosylglycinamide synthetase, N domain EM6_3175 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EM6_3179 PF00133 tRNA synthetases class I (I, L, M and V) EM6_3179 PF08264 Anticodon-binding domain of tRNA EM6_3180 PF01252 Signal peptidase (SPase) II EM6_3182 PF01119 DNA mismatch repair protein, C-terminal domain EM6_3182 PF08676 MutL C terminal dimerisation domain EM6_3185 PF01479 S4 domain EM6_3185 PF00849 RNA pseudouridylate synthase EM6_3192 PF13340 Putative transposase of IS4/5 family (DUF4096) EM6_3194 PF16355 Domain of unknown function (DUF4982) EM6_3194 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 EM6_3194 PF00703 Glycosyl hydrolases family 2 EM6_3194 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_3194 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_3198 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_3198 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_3198 PF02929 Beta galactosidase small chain EM6_3198 PF00703 Glycosyl hydrolases family 2 EM6_3198 PF16353 Domain of unknown function(DUF4981) EM6_3200 PF08548 Peptidase M10 serralysin C terminal EM6_3200 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) EM6_3200 PF12708 Pectate lyase superfamily protein EM6_3205 PF06964 Alpha-L-arabinofuranosidase C-terminal domain EM6_3207 PF16355 Domain of unknown function (DUF4982) EM6_3207 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 EM6_3207 PF00703 Glycosyl hydrolases family 2 EM6_3207 PF02837 Glycosyl hydrolases family 2, sugar binding domain EM6_3207 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EM6_3208 PF01869 BadF/BadG/BcrA/BcrD ATPase family EM6_3212 PF07729 FCD domain EM6_3212 PF00392 Bacterial regulatory proteins, gntR family EM6_3213 PF00392 Bacterial regulatory proteins, gntR family EM6_3213 PF07729 FCD domain EM6_3217 PF01380 SIS domain EM6_3217 PF01418 Helix-turn-helix domain, rpiR family EM6_3219 PF09423 PhoD-like phosphatase EM6_3219 PF16655 PhoD-like phosphatase, N-terminal domain EM6_3220 PF04185 Phosphoesterase family EM6_3220 PF05506 Domain of unknown function (DUF756) EM6_3222 PF13378 Enolase C-terminal domain-like EM6_3222 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EM6_3223 PF07729 FCD domain EM6_3223 PF00392 Bacterial regulatory proteins, gntR family EM6_3224 PF00083 Sugar (and other) transporter EM6_3225 PF03738 Glutathionylspermidine synthase preATP-grasp EM6_3234 PF05114 Protein of unknown function (DUF692) EM6_3237 PF05114 Protein of unknown function (DUF692) EM6_3239 PF04542 Sigma-70 region 2 EM6_3239 PF08281 Sigma-70, region 4 EM6_3243 PF00245 Alkaline phosphatase EM6_3244 PF01593 Flavin containing amine oxidoreductase EM6_3245 PF03441 FAD binding domain of DNA photolyase EM6_3245 PF00875 DNA photolyase EM6_3247 PF03109 ABC1 family EM6_3271 PF00117 Glutamine amidotransferase class-I EM6_3271 PF00958 GMP synthase C terminal domain EM6_3271 PF02540 NAD synthase EM6_3273 PF07715 TonB-dependent Receptor Plug Domain EM6_3273 PF00593 TonB dependent receptor EM6_3275 PF13340 Putative transposase of IS4/5 family (DUF4096) EM6_3281 PF01381 Helix-turn-helix EM6_3285 PF02534 Type IV secretory system Conjugative DNA transfer EM6_3286 PF03412 Peptidase C39 family EM6_3286 PF00005 ABC transporter EM6_3286 PF00664 ABC transporter transmembrane region EM6_3288 PF02811 PHP domain EM6_3288 PF14579 Helix-hairpin-helix motif EM6_3288 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EM6_3288 PF07733 Bacterial DNA polymerase III alpha NTPase domain EM6_3295 PF01381 Helix-turn-helix EM6_3302 PF00437 Type II/IV secretion system protein EM6_3303 PF04956 TrbC/VIRB2 family EM6_3305 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EM6_3307 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EM6_3310 PF03743 Bacterial conjugation TrbI-like protein EM6_3313 PF01548 Transposase EM6_3313 PF02371 Transposase IS116/IS110/IS902 family EM6_3314 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_3314 PF00672 HAMP domain EM6_3314 PF16591 Helical bimodular sensor domain EM6_3315 PF00248 Aldo/keto reductase family EM6_3316 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_3316 PF03466 LysR substrate binding domain EM6_3317 PF13276 HTH-like domain EM6_3317 PF13683 Integrase core domain EM6_3318 PF01527 Transposase EM6_3319 PF02371 Transposase IS116/IS110/IS902 family EM6_3319 PF01548 Transposase EM6_3320 PF03466 LysR substrate binding domain EM6_3320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_3321 PF08240 Alcohol dehydrogenase GroES-like domain EM6_3321 PF00107 Zinc-binding dehydrogenase EM6_3322 PF00873 AcrB/AcrD/AcrF family EM6_3326 PF00106 short chain dehydrogenase EM6_3328 PF02803 Thiolase, C-terminal domain EM6_3328 PF00108 Thiolase, N-terminal domain EM6_3329 PF00248 Aldo/keto reductase family EM6_3331 PF00248 Aldo/keto reductase family EM6_3334 PF00171 Aldehyde dehydrogenase family EM6_3335 PF00106 short chain dehydrogenase EM6_3336 PF00873 AcrB/AcrD/AcrF family EM6_3339 PF02321 Outer membrane efflux protein EM6_3340 PF01548 Transposase EM6_3340 PF02371 Transposase IS116/IS110/IS902 family EM6_3341 PF17200 Single Cache domain 2 EM6_3341 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_3341 PF00672 HAMP domain EM6_3343 PF00216 Bacterial DNA-binding protein EM6_3344 PF05443 ROS/MUCR transcriptional regulator protein EM6_3346 PF10677 Protein of unknown function (DUF2490) EM6_3348 PF07730 Histidine kinase EM6_3348 PF17200 Single Cache domain 2 EM6_3349 PF00072 Response regulator receiver domain EM6_3349 PF00196 Bacterial regulatory proteins, luxR family EM6_3350 PF00989 PAS fold EM6_3350 PF00512 His Kinase A (phospho-acceptor) domain EM6_3350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EM6_3350 PF13188 PAS domain EM6_3351 PF00158 Sigma-54 interaction domain EM6_3351 PF00072 Response regulator receiver domain EM6_3351 PF02954 Bacterial regulatory protein, Fis family EM6_3362 PF04962 KduI/IolB family EM6_3364 PF07690 Major Facilitator Superfamily EM6_3369 PF01614 Bacterial transcriptional regulator EM6_3369 PF09339 IclR helix-turn-helix domain EM6_3370 PF00942 Cellulose binding domain EM6_3370 PF03442 Carbohydrate binding domain X2 EM6_3371 PF01557 Fumarylacetoacetate (FAA) hydrolase family EM6_3372 PF00561 alpha/beta hydrolase fold EM6_3374 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EM6_3374 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EM6_3375 PF08240 Alcohol dehydrogenase GroES-like domain EM6_3375 PF00107 Zinc-binding dehydrogenase EM6_3376 PF03466 LysR substrate binding domain EM6_3376 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EM6_3377 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EM6_3377 PF00672 HAMP domain EM6_3378 PF13614 AAA domain EM6_3379 PF18090 Centromere-binding protein HTH domain EM6_3379 PF02195 ParB-like nuclease domain EM6_3381 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain EM6_3381 PF04616 Glycosyl hydrolases family 43 EM6_3382 PF02661 Fic/DOC family EM6_3382 PF13784 Fic/DOC family N-terminal EM6_3383 PF04962 KduI/IolB family EM6_3384 PF01261 Xylose isomerase-like TIM barrel EM6_3385 PF00205 Thiamine pyrophosphate enzyme, central domain EM6_3385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EM6_3385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EM6_3386 PF00294 pfkB family carbohydrate kinase EM6_3388 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EM6_3388 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EM6_3389 PF07971 Glycosyl hydrolase family 92 EM6_3389 PF17678 Glycosyl hydrolase family 92 N-terminal domain EM6_3390 PF02653 Branched-chain amino acid transport system / permease component EM6_3391 PF00005 ABC transporter EM6_3392 PF13407 Periplasmic binding protein domain EM6_3393 PF00171 Aldehyde dehydrogenase family EM6_3394 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EM6_3395 PF00510 Cytochrome c oxidase subunit III EM6_3396 PF00115 Cytochrome C and Quinol oxidase polypeptide I EM6_3397 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EM6_3397 PF06481 COX Aromatic Rich Motif EM6_3401 PF04962 KduI/IolB family