locus-tag class description CP97_00025 PF00561 alpha/beta hydrolase fold CP97_00040 PF13356 Arm DNA-binding domain CP97_00040 PF00589 Phage integrase family CP97_00045 PF13683 Integrase core domain CP97_00045 PF13276 HTH-like domain CP97_00050 PF01527 Transposase CP97_00055 PF09278 MerR, DNA binding CP97_00055 PF00376 MerR family regulatory protein CP97_00070 PF07715 TonB-dependent Receptor Plug Domain CP97_00070 PF00593 TonB dependent receptor CP97_00075 PF14760 Rnk N-terminus CP97_00075 PF01272 Transcription elongation factor, GreA/GreB, C-term CP97_00125 PF01645 Conserved region in glutamate synthase CP97_00140 PF00576 HIUase/Transthyretin family CP97_00165 PF01037 Lrp/AsnC ligand binding domain CP97_00170 PF02308 MgtC family CP97_00200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_00200 PF00512 His Kinase A (phospho-acceptor) domain CP97_00200 PF00989 PAS fold CP97_00205 PF00196 Bacterial regulatory proteins, luxR family CP97_00205 PF00072 Response regulator receiver domain CP97_00220 PF03458 UPF0126 domain CP97_00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP97_00225 PF03466 LysR substrate binding domain CP97_00230 PF17954 Quercetinase C-terminal cupin domain CP97_00230 PF02678 Pirin CP97_00235 PF03358 NADPH-dependent FMN reductase CP97_00240 PF04264 YceI-like domain CP97_00245 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CP97_00260 PF13276 HTH-like domain CP97_00260 PF13683 Integrase core domain CP97_00265 PF01527 Transposase CP97_00440 PF06834 TraU protein CP97_00450 PF06986 Type-1V conjugative transfer system mating pair stabilisation CP97_00460 PF06122 Conjugative relaxosome accessory transposon protein CP97_00480 PF00171 Aldehyde dehydrogenase family CP97_00490 PF01527 Transposase CP97_00495 PF01548 Transposase CP97_00495 PF02371 Transposase IS116/IS110/IS902 family CP97_00500 PF13276 HTH-like domain CP97_00500 PF13683 Integrase core domain CP97_00520 PF02384 N-6 DNA Methylase CP97_00540 PF00271 Helicase conserved C-terminal domain CP97_00540 PF12419 SNF2 Helicase protein CP97_00540 PF00176 SNF2 family N-terminal domain CP97_00575 PF08751 TrwC relaxase CP97_00575 PF18340 DNA relaxase TraI 2B/2B-like domain CP97_00575 PF07057 DNA helicase TraI CP97_00575 PF18272 single-stranded DNA binding TraI N-terminal subdomain CP97_00600 PF00436 Single-strand binding protein family CP97_00620 PF08401 Domain of unknown function (DUF1738) CP97_00620 PF18818 Metallopeptidase superfamily domain CP97_00660 PF13340 Putative transposase of IS4/5 family (DUF4096) CP97_00665 PF01609 Transposase DDE domain CP97_00680 PF02195 ParB-like nuclease domain CP97_00691 PF13495 Phage integrase, N-terminal SAM-like domain CP97_00691 PF00589 Phage integrase family CP97_00715 PF01464 Transglycosylase SLT domain CP97_00745 PF00923 Transaldolase/Fructose-6-phosphate aldolase CP97_00750 PF00501 AMP-binding enzyme CP97_00750 PF13193 AMP-binding enzyme C-terminal domain CP97_00775 PF03060 Nitronate monooxygenase CP97_00780 PF01842 ACT domain CP97_00780 PF00696 Amino acid kinase family CP97_00780 PF13840 ACT domain CP97_00785 PF08241 Methyltransferase domain CP97_00790 PF13276 HTH-like domain CP97_00790 PF13683 Integrase core domain CP97_00795 PF01527 Transposase CP97_00800 PF03960 ArsC family CP97_00825 PF02075 Crossover junction endodeoxyribonuclease RuvC CP97_00835 PF01709 Transcriptional regulator CP97_00840 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CP97_00850 PF00224 Pyruvate kinase, barrel domain CP97_00850 PF02887 Pyruvate kinase, alpha/beta domain CP97_00860 PF00085 Thioredoxin CP97_00870 PF01914 MarC family integral membrane protein CP97_00880 PF02325 YGGT family CP97_00885 PF00696 Amino acid kinase family CP97_00890 PF03976 Polyphosphate kinase 2 (PPK2) CP97_00920 PF00268 Ribonucleotide reductase, small chain CP97_00930 PF00797 N-acetyltransferase CP97_00945 PF02867 Ribonucleotide reductase, barrel domain CP97_00945 PF00317 Ribonucleotide reductase, all-alpha domain CP97_00945 PF03477 ATP cone domain CP97_00955 PF02910 Fumarate reductase flavoprotein C-term CP97_00955 PF00890 FAD binding domain CP97_00960 PF00005 ABC transporter CP97_00995 PF00117 Glutamine amidotransferase class-I CP97_00995 PF00958 GMP synthase C terminal domain CP97_00995 PF02540 NAD synthase CP97_01000 PF01751 Toprim domain CP97_01000 PF00204 DNA gyrase B CP97_01000 PF00986 DNA gyrase B subunit, carboxyl terminus CP97_01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_01005 PF01594 AI-2E family transporter CP97_01030 PF01039 Carboxyl transferase domain CP97_01040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP97_01040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP97_01040 PF02770 Acyl-CoA dehydrogenase, middle domain CP97_01055 PF01790 Prolipoprotein diacylglyceryl transferase CP97_01060 PF01966 HD domain CP97_01060 PF08335 GlnD PII-uridylyltransferase CP97_01075 PF01168 Alanine racemase, N-terminal domain CP97_01080 PF02581 Thiamine monophosphate synthase CP97_01085 PF09397 Ftsk gamma domain CP97_01085 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CP97_01085 PF17854 FtsK alpha domain CP97_01085 PF01580 FtsK/SpoIIIE family CP97_01090 PF18030 RimK PreATP-grasp domain CP97_01090 PF08443 RimK-like ATP-grasp domain CP97_01095 PF08443 RimK-like ATP-grasp domain CP97_01095 PF18030 RimK PreATP-grasp domain CP97_01105 PF18030 RimK PreATP-grasp domain CP97_01105 PF08443 RimK-like ATP-grasp domain CP97_01115 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CP97_01115 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CP97_01130 PF00326 Prolyl oligopeptidase family CP97_01130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CP97_01145 PF00486 Transcriptional regulatory protein, C terminal CP97_01145 PF00072 Response regulator receiver domain CP97_01150 PF00672 HAMP domain CP97_01150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_01150 PF00512 His Kinase A (phospho-acceptor) domain CP97_01155 PF05872 Bacterial protein of unknown function (DUF853) CP97_01160 PF00425 chorismate binding enzyme CP97_01160 PF04715 Anthranilate synthase component I, N terminal region CP97_01165 PF00155 Aminotransferase class I and II CP97_01170 PF00849 RNA pseudouridylate synthase CP97_01175 PF00472 RF-1 domain CP97_01180 PF00471 Ribosomal protein L33 CP97_01195 PF00925 GTP cyclohydrolase II CP97_01200 PF01258 Prokaryotic dksA/traR C4-type zinc finger CP97_01210 PF00270 DEAD/DEAH box helicase CP97_01210 PF00271 Helicase conserved C-terminal domain CP97_01210 PF09382 RQC domain CP97_01210 PF00570 HRDC domain CP97_01210 PF16124 RecQ zinc-binding CP97_01225 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CP97_01235 PF02673 Bacitracin resistance protein BacA CP97_01240 PF01431 Peptidase family M13 CP97_01240 PF05649 Peptidase family M13 CP97_01245 PF00005 ABC transporter CP97_01245 PF00664 ABC transporter transmembrane region CP97_01270 PF13439 Glycosyltransferase Family 4 CP97_01270 PF00534 Glycosyl transferases group 1 CP97_01280 PF01493 GXGXG motif CP97_01280 PF01645 Conserved region in glutamate synthase CP97_01280 PF04898 Glutamate synthase central domain CP97_01280 PF00310 Glutamine amidotransferases class-II CP97_01285 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CP97_01285 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_01295 PF03167 Uracil DNA glycosylase superfamily CP97_01300 PF00570 HRDC domain CP97_01300 PF01612 3'-5' exonuclease CP97_01335 PF00733 Asparagine synthase CP97_01335 PF13537 Glutamine amidotransferase domain CP97_01355 PF00664 ABC transporter transmembrane region CP97_01355 PF00005 ABC transporter CP97_01365 PF00483 Nucleotidyl transferase CP97_01370 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CP97_01375 PF04321 RmlD substrate binding domain CP97_01380 PF16363 GDP-mannose 4,6 dehydratase CP97_01470 PF02397 Bacterial sugar transferase CP97_01485 PF13603 Leucyl-tRNA synthetase, Domain 2 CP97_01485 PF08264 Anticodon-binding domain of tRNA CP97_01485 PF00133 tRNA synthetases class I (I, L, M and V) CP97_01520 PF00483 Nucleotidyl transferase CP97_01525 PF01476 LysM domain CP97_01525 PF01551 Peptidase family M23 CP97_01525 PF08525 Opacity-associated protein A N-terminal motif CP97_01530 PF00578 AhpC/TSA family CP97_01535 PF08335 GlnD PII-uridylyltransferase CP97_01535 PF03710 Glutamate-ammonia ligase adenylyltransferase CP97_01545 PF04371 Porphyromonas-type peptidyl-arginine deiminase CP97_01550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CP97_01550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP97_01550 PF02824 TGS domain CP97_01550 PF03129 Anticodon binding domain CP97_01560 PF00296 Luciferase-like monooxygenase CP97_01565 PF05088 Bacterial NAD-glutamate dehydrogenase CP97_01570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_01570 PF14759 Reductase C-terminal CP97_01575 PF08331 Domain of unknown function (DUF1730) CP97_01580 PF00005 ABC transporter CP97_01580 PF13732 Domain of unknown function (DUF4162) CP97_01590 PF01641 SelR domain CP97_01620 PF00216 Bacterial DNA-binding protein CP97_01625 PF00392 Bacterial regulatory proteins, gntR family CP97_01625 PF07702 UTRA domain CP97_01630 PF00854 POT family CP97_01635 PF01979 Amidohydrolase family CP97_01650 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CP97_01650 PF02779 Transketolase, pyrimidine binding domain CP97_01650 PF02780 Transketolase, C-terminal domain CP97_01660 PF01625 Peptide methionine sulfoxide reductase CP97_01665 PF01808 AICARFT/IMPCHase bienzyme CP97_01665 PF02142 MGS-like domain CP97_01675 PF00834 Ribulose-phosphate 3 epimerase family CP97_01695 PF01546 Peptidase family M20/M25/M40 CP97_01695 PF07687 Peptidase dimerisation domain CP97_01725 PF00248 Aldo/keto reductase family CP97_01730 PF02627 Carboxymuconolactone decarboxylase family CP97_01745 PF01588 Putative tRNA binding domain CP97_01750 PF13181 Tetratricopeptide repeat CP97_01755 PF00593 TonB dependent receptor CP97_01755 PF07715 TonB-dependent Receptor Plug Domain CP97_01760 PF02028 BCCT, betaine/carnitine/choline family transporter CP97_01770 PF05736 OprF membrane domain CP97_01770 PF00691 OmpA family CP97_01805 PF01435 Peptidase family M48 CP97_01815 PF07694 5TMR of 5TMR-LYT CP97_01815 PF06580 Histidine kinase CP97_01820 PF00072 Response regulator receiver domain CP97_01820 PF04397 LytTr DNA-binding domain CP97_01825 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CP97_01825 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CP97_01835 PF14437 MafB19-like deaminase CP97_01840 PF00830 Ribosomal L28 family CP97_01850 PF01551 Peptidase family M23 CP97_01850 PF01476 LysM domain CP97_01860 PF02601 Exonuclease VII, large subunit CP97_01860 PF13742 OB-fold nucleic acid binding domain CP97_01865 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CP97_01865 PF02843 Phosphoribosylglycinamide synthetase, C domain CP97_01865 PF02844 Phosphoribosylglycinamide synthetase, N domain CP97_01870 PF00294 pfkB family carbohydrate kinase CP97_01890 PF01521 Iron-sulphur cluster biosynthesis CP97_01895 PF01883 Iron-sulfur cluster assembly protein CP97_01900 PF00266 Aminotransferase class-V CP97_01910 PF01458 Uncharacterized protein family (UPF0051) CP97_01915 PF00005 ABC transporter CP97_01925 PF01458 Uncharacterized protein family (UPF0051) CP97_01940 PF01180 Dihydroorotate dehydrogenase CP97_01950 PF00501 AMP-binding enzyme CP97_01960 PF05690 Thiazole biosynthesis protein ThiG CP97_01970 PF02628 Cytochrome oxidase assembly protein CP97_01975 PF03091 CutA1 divalent ion tolerance protein CP97_01980 PF00572 Ribosomal protein L13 CP97_01985 PF00380 Ribosomal protein S9/S16 CP97_01990 PF00072 Response regulator receiver domain CP97_02010 PF04397 LytTr DNA-binding domain CP97_02010 PF00072 Response regulator receiver domain CP97_02015 PF06580 Histidine kinase CP97_02015 PF07694 5TMR of 5TMR-LYT CP97_02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_02015 PF13492 GAF domain CP97_02020 PF05681 Fumarate hydratase (Fumerase) CP97_02020 PF05683 Fumarase C-terminus CP97_02030 PF02321 Outer membrane efflux protein CP97_02055 PF01521 Iron-sulphur cluster biosynthesis CP97_02065 PF01471 Putative peptidoglycan binding domain CP97_02065 PF07486 Cell Wall Hydrolase CP97_02080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP97_02085 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CP97_02085 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CP97_02090 PF00929 Exonuclease CP97_02095 PF01121 Dephospho-CoA kinase CP97_02100 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CP97_02100 PF08501 Shikimate dehydrogenase substrate binding domain CP97_02105 PF02545 Maf-like protein CP97_02110 PF03618 Kinase/pyrophosphorylase CP97_02115 PF01208 Uroporphyrinogen decarboxylase (URO-D) CP97_02120 PF03653 Uncharacterised protein family (UPF0093) CP97_02125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP97_02125 PF07498 Rho termination factor, N-terminal domain CP97_02125 PF07497 Rho termination factor, RNA-binding domain CP97_02135 PF01738 Dienelactone hydrolase family CP97_02145 PF01926 50S ribosome-binding GTPase CP97_02145 PF12631 MnmE helical domain CP97_02145 PF10396 GTP-binding protein TrmE N-terminus CP97_02150 PF01134 Glucose inhibited division protein A CP97_02150 PF13932 GidA associated domain CP97_02155 PF02527 rRNA small subunit methyltransferase G CP97_02160 PF13614 AAA domain CP97_02165 PF02195 ParB-like nuclease domain CP97_02165 PF17762 HTH domain found in ParB protein CP97_02175 PF13185 GAF domain CP97_02180 PF07995 Glucose / Sorbosone dehydrogenase CP97_02190 PF01300 Telomere recombination CP97_02205 PF02559 CarD-like/TRCF domain CP97_02210 PF03631 Virulence factor BrkB CP97_02215 PF11953 Domain of unknown function (DUF3470) CP97_02215 PF00037 4Fe-4S binding domain CP97_02220 PF01479 S4 domain CP97_02220 PF00163 Ribosomal protein S4/S9 N-terminal domain CP97_02230 PF01551 Peptidase family M23 CP97_02230 PF04225 Opacity-associated protein A LysM-like domain CP97_02235 PF00490 Delta-aminolevulinic acid dehydratase CP97_02250 PF00132 Bacterial transferase hexapeptide (six repeats) CP97_02255 PF04679 ATP dependent DNA ligase C terminal region CP97_02255 PF01068 ATP dependent DNA ligase domain CP97_02255 PF04675 DNA ligase N terminus CP97_02270 PF00004 ATPase family associated with various cellular activities (AAA) CP97_02270 PF02861 Clp amino terminal domain, pathogenicity island component CP97_02270 PF07724 AAA domain (Cdc48 subfamily) CP97_02270 PF10431 C-terminal, D2-small domain, of ClpB protein CP97_02270 PF17871 AAA lid domain CP97_02280 PF00107 Zinc-binding dehydrogenase CP97_02280 PF08240 Alcohol dehydrogenase GroES-like domain CP97_02290 PF13439 Glycosyltransferase Family 4 CP97_02290 PF00534 Glycosyl transferases group 1 CP97_02305 PF01476 LysM domain CP97_02305 PF08525 Opacity-associated protein A N-terminal motif CP97_02305 PF01551 Peptidase family M23 CP97_02310 PF00171 Aldehyde dehydrogenase family CP97_02315 PF01467 Cytidylyltransferase-like CP97_02325 PF02590 Predicted SPOUT methyltransferase CP97_02335 PF03572 Peptidase family S41 CP97_02335 PF13180 PDZ domain CP97_02340 PF02600 Disulfide bond formation protein DsbB CP97_02345 PF03232 Ubiquinone biosynthesis protein COQ7 CP97_02360 PF03631 Virulence factor BrkB CP97_02365 PF00226 DnaJ domain CP97_02365 PF01556 DnaJ C terminal domain CP97_02365 PF00684 DnaJ central domain CP97_02370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CP97_02370 PF01243 Pyridoxamine 5'-phosphate oxidase CP97_02375 PF01545 Cation efflux family CP97_02375 PF16916 Dimerisation domain of Zinc Transporter CP97_02380 PF02567 Phenazine biosynthesis-like protein CP97_02415 PF13533 Biotin-lipoyl like CP97_02420 PF00873 AcrB/AcrD/AcrF family CP97_02425 PF04286 Protein of unknown function (DUF445) CP97_02455 PF08442 ATP-grasp domain CP97_02455 PF00549 CoA-ligase CP97_02460 PF00459 Inositol monophosphatase family CP97_02465 PF05736 OprF membrane domain CP97_02465 PF00691 OmpA family CP97_02470 PF00571 CBS domain CP97_02470 PF03471 Transporter associated domain CP97_02470 PF01595 Cyclin M transmembrane N-terminal domain CP97_02480 PF01252 Signal peptidase (SPase) II CP97_02485 PF00133 tRNA synthetases class I (I, L, M and V) CP97_02485 PF08264 Anticodon-binding domain of tRNA CP97_02490 PF06574 FAD synthetase CP97_02490 PF01687 Riboflavin kinase CP97_02495 PF01244 Membrane dipeptidase (Peptidase family M19) CP97_02500 PF00186 Dihydrofolate reductase CP97_02505 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CP97_02505 PF02222 ATP-grasp domain CP97_02510 PF00731 AIR carboxylase CP97_02515 PF00300 Histidine phosphatase superfamily (branch 1) CP97_02525 PF09347 Domain of unknown function (DUF1989) CP97_02580 PF01433 Peptidase family M1 domain CP97_02580 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CP97_02580 PF11940 Domain of unknown function (DUF3458) Ig-like fold CP97_02585 PF02578 Multi-copper polyphenol oxidoreductase laccase CP97_02590 PF00355 Rieske [2Fe-2S] domain CP97_02590 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CP97_02595 PF00033 Cytochrome b/b6/petB CP97_02595 PF00032 Cytochrome b(C-terminal)/b6/petD CP97_02600 PF00033 Cytochrome b/b6/petB CP97_02600 PF02167 Cytochrome C1 family CP97_02600 PF00032 Cytochrome b(C-terminal)/b6/petD CP97_02605 PF00156 Phosphoribosyl transferase domain CP97_02625 PF13356 Arm DNA-binding domain CP97_02625 PF00589 Phage integrase family CP97_02655 PF02569 Pantoate-beta-alanine ligase CP97_02660 PF13614 AAA domain CP97_02670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CP97_02670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CP97_02670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CP97_02670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CP97_02685 PF08494 DEAD/H associated CP97_02685 PF00271 Helicase conserved C-terminal domain CP97_02685 PF00270 DEAD/DEAH box helicase CP97_02690 PF02472 Biopolymer transport protein ExbD/TolR CP97_02695 PF02472 Biopolymer transport protein ExbD/TolR CP97_02700 PF01618 MotA/TolQ/ExbB proton channel family CP97_02720 PF01842 ACT domain CP97_02720 PF03447 Homoserine dehydrogenase, NAD binding domain CP97_02720 PF00742 Homoserine dehydrogenase CP97_02735 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CP97_02740 PF14572 Phosphoribosyl synthetase-associated domain CP97_02740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CP97_02750 PF00459 Inositol monophosphatase family CP97_02755 PF13581 Histidine kinase-like ATPase domain CP97_02755 PF07568 Histidine kinase CP97_02755 PF13426 PAS domain CP97_02760 PF01632 Ribosomal protein L35 CP97_02765 PF00453 Ribosomal protein L20 CP97_02770 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CP97_02770 PF01409 tRNA synthetases class II core domain (F) CP97_02775 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CP97_02775 PF03484 tRNA synthetase B5 domain CP97_02775 PF03483 B3/4 domain CP97_02775 PF01588 Putative tRNA binding domain CP97_02775 PF03147 Ferredoxin-fold anticodon binding domain CP97_02790 PF03144 Elongation factor Tu domain 2 CP97_02790 PF00009 Elongation factor Tu GTP binding domain CP97_02790 PF16658 Class II release factor RF3, C-terminal domain CP97_02805 PF00543 Nitrogen regulatory protein P-II CP97_02810 PF00909 Ammonium Transporter Family CP97_02815 PF00691 OmpA family CP97_02820 PF00313 'Cold-shock' DNA-binding domain CP97_02825 PF00202 Aminotransferase class-III CP97_02830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CP97_02830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CP97_02835 PF01430 Hsp33 protein CP97_02845 PF06508 Queuosine biosynthesis protein QueC CP97_02850 PF00080 Copper/zinc superoxide dismutase (SODC) CP97_02920 PF04860 Phage portal protein CP97_02940 PF00155 Aminotransferase class I and II CP97_02950 PF00072 Response regulator receiver domain CP97_02985 PF01258 Prokaryotic dksA/traR C4-type zinc finger CP97_03005 PF03301 Tryptophan 2,3-dioxygenase CP97_03010 PF00266 Aminotransferase class-V CP97_03030 PF01923 Cobalamin adenosyltransferase CP97_03045 PF00488 MutS domain V CP97_03045 PF05190 MutS family domain IV CP97_03045 PF05192 MutS domain III CP97_03045 PF05188 MutS domain II CP97_03045 PF01624 MutS domain I CP97_03050 PF03949 Malic enzyme, NAD binding domain CP97_03050 PF00390 Malic enzyme, N-terminal domain CP97_03050 PF01515 Phosphate acetyl/butaryl transferase CP97_03055 PF03109 ABC1 family CP97_03060 PF02321 Outer membrane efflux protein CP97_03065 PF07690 Major Facilitator Superfamily CP97_03070 PF13533 Biotin-lipoyl like CP97_03090 PF00593 TonB dependent receptor CP97_03090 PF07715 TonB-dependent Receptor Plug Domain CP97_03095 PF00355 Rieske [2Fe-2S] domain CP97_03100 PF00111 2Fe-2S iron-sulfur cluster binding domain CP97_03105 PF13193 AMP-binding enzyme C-terminal domain CP97_03105 PF00501 AMP-binding enzyme CP97_03110 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP97_03110 PF00355 Rieske [2Fe-2S] domain CP97_03115 PF00866 Ring hydroxylating beta subunit CP97_03140 PF01557 Fumarylacetoacetate (FAA) hydrolase family CP97_03145 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP97_03145 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CP97_03150 PF07836 DmpG-like communication domain CP97_03150 PF00682 HMGL-like CP97_03155 PF01557 Fumarylacetoacetate (FAA) hydrolase family CP97_03160 PF00561 alpha/beta hydrolase fold CP97_03190 PF04542 Sigma-70 region 2 CP97_03190 PF08281 Sigma-70, region 4 CP97_03200 PF17243 POTRA domain TamA domain 1 CP97_03200 PF01103 Surface antigen CP97_03205 PF03631 Virulence factor BrkB CP97_03210 PF02390 Putative methyltransferase CP97_03215 PF01925 Sulfite exporter TauE/SafE CP97_03220 PF00072 Response regulator receiver domain CP97_03220 PF00486 Transcriptional regulatory protein, C terminal CP97_03230 PF00042 Globin CP97_03230 PF00970 Oxidoreductase FAD-binding domain CP97_03230 PF00175 Oxidoreductase NAD-binding domain CP97_03240 PF02082 Transcriptional regulator CP97_03245 PF04963 Sigma-54 factor, core binding domain CP97_03245 PF04552 Sigma-54, DNA binding domain CP97_03245 PF00309 Sigma-54 factor, Activator interacting domain (AID) CP97_03250 PF00005 ABC transporter CP97_03260 PF00924 Mechanosensitive ion channel CP97_03265 PF00144 Beta-lactamase CP97_03270 PF00719 Inorganic pyrophosphatase CP97_03275 PF13393 Histidyl-tRNA synthetase CP97_03280 PF00472 RF-1 domain CP97_03280 PF03462 PCRF domain CP97_03285 PF17827 PrmC N-terminal domain CP97_03285 PF05175 Methyltransferase small domain CP97_03295 PF00795 Carbon-nitrogen hydrolase CP97_03300 PF02772 S-adenosylmethionine synthetase, central domain CP97_03300 PF02773 S-adenosylmethionine synthetase, C-terminal domain CP97_03300 PF00438 S-adenosylmethionine synthetase, N-terminal domain CP97_03305 PF04235 Protein of unknown function (DUF418) CP97_03315 PF00535 Glycosyl transferase family 2 CP97_03325 PF01434 Peptidase family M41 CP97_03325 PF17862 AAA+ lid domain CP97_03325 PF00004 ATPase family associated with various cellular activities (AAA) CP97_03330 PF00924 Mechanosensitive ion channel CP97_03335 PF01367 5'-3' exonuclease, C-terminal SAM fold CP97_03335 PF01612 3'-5' exonuclease CP97_03335 PF00476 DNA polymerase family A CP97_03335 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CP97_03340 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CP97_03340 PF13807 G-rich domain on putative tyrosine kinase CP97_03340 PF02706 Chain length determinant protein CP97_03360 PF05275 Copper resistance protein B precursor (CopB) CP97_03365 PF07732 Multicopper oxidase CP97_03365 PF00394 Multicopper oxidase CP97_03365 PF07731 Multicopper oxidase CP97_03370 PF02583 Metal-sensitive transcriptional repressor CP97_03400 PF00118 TCP-1/cpn60 chaperonin family CP97_03405 PF00166 Chaperonin 10 Kd subunit CP97_03410 PF01554 MatE CP97_03420 PF01925 Sulfite exporter TauE/SafE CP97_03425 PF16320 Ribosomal protein L7/L12 dimerisation domain CP97_03425 PF00542 Ribosomal protein L7/L12 C-terminal domain CP97_03430 PF00466 Ribosomal protein L10 CP97_03440 PF13443 Cro/C1-type HTH DNA-binding domain CP97_03450 PF04560 RNA polymerase Rpb2, domain 7 CP97_03450 PF00562 RNA polymerase Rpb2, domain 6 CP97_03450 PF10385 RNA polymerase beta subunit external 1 domain CP97_03450 PF04561 RNA polymerase Rpb2, domain 2 CP97_03450 PF04563 RNA polymerase beta subunit CP97_03450 PF04565 RNA polymerase Rpb2, domain 3 CP97_03455 PF04997 RNA polymerase Rpb1, domain 1 CP97_03455 PF00623 RNA polymerase Rpb1, domain 2 CP97_03455 PF04983 RNA polymerase Rpb1, domain 3 CP97_03455 PF05000 RNA polymerase Rpb1, domain 4 CP97_03455 PF04998 RNA polymerase Rpb1, domain 5 CP97_03470 PF00749 tRNA synthetases class I (E and Q), catalytic domain CP97_03480 PF07715 TonB-dependent Receptor Plug Domain CP97_03480 PF00593 TonB dependent receptor CP97_03485 PF00692 dUTPase CP97_03495 PF01619 Proline dehydrogenase CP97_03495 PF00171 Aldehyde dehydrogenase family CP97_03495 PF14850 DNA-binding domain of Proline dehydrogenase CP97_03495 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CP97_03520 PF00005 ABC transporter CP97_03525 PF13717 zinc-ribbon domain CP97_03535 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CP97_03535 PF00132 Bacterial transferase hexapeptide (six repeats) CP97_03540 PF00282 Pyridoxal-dependent decarboxylase conserved domain CP97_03570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_03575 PF00378 Enoyl-CoA hydratase/isomerase CP97_03580 PF02153 Prephenate dehydrogenase CP97_03585 PF00155 Aminotransferase class I and II CP97_03590 PF00561 alpha/beta hydrolase fold CP97_03595 PF00561 alpha/beta hydrolase fold CP97_03595 PF07021 Methionine biosynthesis protein MetW CP97_03605 PF00756 Putative esterase CP97_03610 PF00107 Zinc-binding dehydrogenase CP97_03610 PF08240 Alcohol dehydrogenase GroES-like domain CP97_03615 PF00171 Aldehyde dehydrogenase family CP97_03625 PF00043 Glutathione S-transferase, C-terminal domain CP97_03625 PF13417 Glutathione S-transferase, N-terminal domain CP97_03630 PF01641 SelR domain CP97_03635 PF00905 Penicillin binding protein transpeptidase domain CP97_03635 PF00912 Transglycosylase CP97_03640 PF13180 PDZ domain CP97_03650 PF12221 Bacterial membrane protein N terminal CP97_03650 PF01145 SPFH domain / Band 7 family CP97_03655 PF01883 Iron-sulfur cluster assembly protein CP97_03655 PF10609 NUBPL iron-transfer P-loop NTPase CP97_03665 PF00762 Ferrochelatase CP97_03675 PF01189 16S rRNA methyltransferase RsmB/F CP97_03675 PF01029 NusB family CP97_03680 PF01625 Peptide methionine sulfoxide reductase CP97_03695 PF00795 Carbon-nitrogen hydrolase CP97_03710 PF07690 Major Facilitator Superfamily CP97_03715 PF13533 Biotin-lipoyl like CP97_03735 PF01061 ABC-2 type transporter CP97_03750 PF02563 Polysaccharide biosynthesis/export protein CP97_03755 PF01066 CDP-alcohol phosphatidyltransferase CP97_03755 PF00483 Nucleotidyl transferase CP97_03765 PF00534 Glycosyl transferases group 1 CP97_03770 PF01658 Myo-inositol-1-phosphate synthase CP97_03775 PF00483 Nucleotidyl transferase CP97_03775 PF01066 CDP-alcohol phosphatidyltransferase CP97_03785 PF00294 pfkB family carbohydrate kinase CP97_03790 PF01081 KDPG and KHG aldolase CP97_03800 PF07690 Major Facilitator Superfamily CP97_03810 PF05426 Alginate lyase CP97_03810 PF07940 Heparinase II/III-like protein CP97_03815 PF14592 Chondroitinase B CP97_03820 PF00392 Bacterial regulatory proteins, gntR family CP97_03820 PF07729 FCD domain CP97_03855 PF00437 Type II/IV secretion system protein CP97_03885 PF04972 BON domain CP97_03885 PF00263 Bacterial type II and III secretion system protein CP97_03885 PF13629 Pilus formation protein N terminal region CP97_03915 PF01609 Transposase DDE domain CP97_03920 PF13340 Putative transposase of IS4/5 family (DUF4096) CP97_03935 PF00459 Inositol monophosphatase family CP97_03940 PF00009 Elongation factor Tu GTP binding domain CP97_03945 PF01507 Phosphoadenosine phosphosulfate reductase family CP97_03955 PF01238 Phosphomannose isomerase type I CP97_03965 PF00004 ATPase family associated with various cellular activities (AAA) CP97_03965 PF01434 Peptidase family M41 CP97_03965 PF17862 AAA+ lid domain CP97_03985 PF01192 RNA polymerase Rpb6 CP97_03990 PF13091 PLD-like domain CP97_03990 PF13396 Phospholipase_D-nuclease N-terminal CP97_04000 PF03796 DnaB-like helicase C terminal domain CP97_04000 PF00772 DnaB-like helicase N terminal domain CP97_04005 PF06793 Uncharacterised protein family (UPF0262) CP97_04020 PF00246 Zinc carboxypeptidase CP97_04020 PF18027 Cytosolic carboxypeptidase N-terminal domain CP97_04030 PF01370 NAD dependent epimerase/dehydratase family CP97_04035 PF00444 Ribosomal protein L36 CP97_04050 PF01638 HxlR-like helix-turn-helix CP97_04055 PF13335 Magnesium chelatase, subunit ChlI C-terminal CP97_04055 PF01078 Magnesium chelatase, subunit ChlI CP97_04070 PF00825 Ribonuclease P CP97_04075 PF14849 YidC periplasmic domain CP97_04075 PF02096 60Kd inner membrane protein CP97_04080 PF01926 50S ribosome-binding GTPase CP97_04085 PF00990 Diguanylate cyclase, GGDEF domain CP97_04085 PF00563 EAL domain CP97_04085 PF03707 Bacterial signalling protein N terminal repeat CP97_04095 PF01546 Peptidase family M20/M25/M40 CP97_04095 PF07687 Peptidase dimerisation domain CP97_04100 PF00375 Sodium:dicarboxylate symporter family CP97_04110 PF00730 HhH-GPD superfamily base excision DNA repair protein CP97_04110 PF00633 Helix-hairpin-helix motif CP97_04110 PF10576 Iron-sulfur binding domain of endonuclease III CP97_04120 PF16491 CAAX prenyl protease N-terminal, five membrane helices CP97_04120 PF01435 Peptidase family M48 CP97_04125 PF01113 Dihydrodipicolinate reductase, N-terminus CP97_04125 PF05173 Dihydrodipicolinate reductase, C-terminus CP97_04130 PF02146 Sir2 family CP97_04140 PF00899 ThiF family CP97_04145 PF00308 Bacterial dnaA protein CP97_04145 PF08299 Bacterial dnaA protein helix-turn-helix CP97_04145 PF11638 DnaA N-terminal domain CP97_04150 PF01649 Ribosomal protein S20 CP97_04155 PF06827 Zinc finger found in FPG and IleRS CP97_04155 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CP97_04155 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CP97_04160 PF01209 ubiE/COQ5 methyltransferase family CP97_04165 PF03109 ABC1 family CP97_04180 PF02441 Flavoprotein CP97_04180 PF04127 DNA / pantothenate metabolism flavoprotein CP97_04185 PF00692 dUTPase CP97_04195 PF00579 tRNA synthetases class I (W and Y) CP97_04200 PF03023 Lipid II flippase MurJ CP97_04205 PF02556 Preprotein translocase subunit SecB CP97_04210 PF04280 Tim44-like domain CP97_04230 PF00141 Peroxidase CP97_04235 PF13192 Thioredoxin domain CP97_04235 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_04240 PF00578 AhpC/TSA family CP97_04240 PF10417 C-terminal domain of 1-Cys peroxiredoxin CP97_04245 PF01264 Chorismate synthase CP97_04250 PF07499 RuvA, C-terminal domain CP97_04250 PF01330 RuvA N terminal domain CP97_04260 PF05491 RuvB C-terminal winged helix domain CP97_04260 PF17864 RuvB AAA lid domain CP97_04260 PF05496 Holliday junction DNA helicase RuvB P-loop domain CP97_04270 PF00694 Aconitase C-terminal domain CP97_04270 PF00330 Aconitase family (aconitate hydratase) CP97_04285 PF01471 Putative peptidoglycan binding domain CP97_04285 PF03734 L,D-transpeptidase catalytic domain CP97_04305 PF00850 Histone deacetylase domain CP97_04310 PF04551 GcpE protein CP97_04315 PF01544 CorA-like Mg2+ transporter protein CP97_04320 PF00999 Sodium/hydrogen exchanger family CP97_04320 PF02254 TrkA-N domain CP97_04355 PF17863 AAA lid domain CP97_04355 PF07726 ATPase family associated with various cellular activities (AAA) CP97_04375 PF00800 Prephenate dehydratase CP97_04380 PF00034 Cytochrome c CP97_04385 PF01728 FtsJ-like methyltransferase CP97_04400 PF00535 Glycosyl transferase family 2 CP97_04405 PF01370 NAD dependent epimerase/dehydratase family CP97_04405 PF00391 PEP-utilising enzyme, mobile domain CP97_04410 PF13847 Methyltransferase domain CP97_04415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP97_04415 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_04440 PF07715 TonB-dependent Receptor Plug Domain CP97_04440 PF00593 TonB dependent receptor CP97_04450 PF00551 Formyl transferase CP97_04455 PF02581 Thiamine monophosphate synthase CP97_04455 PF08543 Phosphomethylpyrimidine kinase CP97_04465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CP97_04465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CP97_04465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CP97_04465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CP97_04470 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CP97_04470 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CP97_04480 PF04542 Sigma-70 region 2 CP97_04480 PF08281 Sigma-70, region 4 CP97_04490 PF13426 PAS domain CP97_04490 PF13581 Histidine kinase-like ATPase domain CP97_04490 PF07536 HWE histidine kinase CP97_04505 PF01312 FlhB HrpN YscU SpaS Family CP97_04515 PF01313 Bacterial export proteins, family 3 CP97_04520 PF00813 FliP family CP97_04530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CP97_04530 PF16973 Flagellar motor switch protein FliN N-terminal CP97_04555 PF18269 T3SS EscN ATPase C-terminal domain CP97_04555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP97_04565 PF14841 FliG middle domain CP97_04565 PF01706 FliG C-terminal domain CP97_04565 PF14842 FliG N-terminal domain CP97_04570 PF01514 Secretory protein of YscJ/FliF family CP97_04570 PF08345 Flagellar M-ring protein C-terminal CP97_04575 PF02049 Flagellar hook-basal body complex protein FliE CP97_04580 PF00158 Sigma-54 interaction domain CP97_04580 PF02954 Bacterial regulatory protein, Fis family CP97_04580 PF00072 Response regulator receiver domain CP97_04585 PF00669 Bacterial flagellin N-terminal helical region CP97_04585 PF00700 Bacterial flagellin C-terminal helical region CP97_04605 PF01618 MotA/TolQ/ExbB proton channel family CP97_04610 PF00700 Bacterial flagellin C-terminal helical region CP97_04610 PF00669 Bacterial flagellin N-terminal helical region CP97_04615 PF00460 Flagella basal body rod protein CP97_04615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP97_04625 PF02119 Flagellar P-ring protein CP97_04630 PF02107 Flagellar L-ring protein CP97_04635 PF00460 Flagella basal body rod protein CP97_04635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP97_04640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP97_04640 PF00460 Flagella basal body rod protein CP97_04645 PF00460 Flagella basal body rod protein CP97_04645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP97_04650 PF03963 Flagellar hook capping protein - N-terminal region CP97_04665 PF01618 MotA/TolQ/ExbB proton channel family CP97_04695 PF00771 FHIPEP family CP97_04700 PF04542 Sigma-70 region 2 CP97_04700 PF04539 Sigma-70 region 3 CP97_04700 PF04545 Sigma-70, region 4 CP97_04710 PF00528 Binding-protein-dependent transport system inner membrane component CP97_04715 PF00005 ABC transporter CP97_04715 PF03459 TOBE domain CP97_04720 PF00440 Bacterial regulatory proteins, tetR family CP97_04725 PF00593 TonB dependent receptor CP97_04725 PF07715 TonB-dependent Receptor Plug Domain CP97_04735 PF07690 Major Facilitator Superfamily CP97_04745 PF00535 Glycosyl transferase family 2 CP97_04755 PF00593 TonB dependent receptor CP97_04755 PF07715 TonB-dependent Receptor Plug Domain CP97_04760 PF09423 PhoD-like phosphatase CP97_04760 PF16655 PhoD-like phosphatase, N-terminal domain CP97_04775 PF00155 Aminotransferase class I and II CP97_04780 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CP97_04780 PF00561 alpha/beta hydrolase fold CP97_04790 PF02617 ATP-dependent Clp protease adaptor protein ClpS CP97_04825 PF00072 Response regulator receiver domain CP97_04830 PF01554 MatE CP97_04835 PF00111 2Fe-2S iron-sulfur cluster binding domain CP97_04835 PF01799 [2Fe-2S] binding domain CP97_04840 PF07715 TonB-dependent Receptor Plug Domain CP97_04840 PF00593 TonB dependent receptor CP97_04845 PF03960 ArsC family CP97_04860 PF03099 Biotin/lipoate A/B protein ligase family CP97_04875 PF10011 Predicted membrane protein (DUF2254) CP97_04880 PF02445 Quinolinate synthetase A protein CP97_04890 PF00753 Metallo-beta-lactamase superfamily CP97_04890 PF16123 Hydroxyacylglutathione hydrolase C-terminus CP97_04895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP97_04895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CP97_04910 PF02896 PEP-utilising enzyme, TIM barrel domain CP97_04910 PF05524 PEP-utilising enzyme, N-terminal CP97_04910 PF00391 PEP-utilising enzyme, mobile domain CP97_04925 PF01171 PP-loop family CP97_04940 PF01081 KDPG and KHG aldolase CP97_04945 PF02685 Glucokinase CP97_04950 PF00920 Dehydratase family CP97_04955 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CP97_04955 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CP97_04965 PF01894 Uncharacterised protein family UPF0047 CP97_04975 PF04542 Sigma-70 region 2 CP97_04975 PF08281 Sigma-70, region 4 CP97_04980 PF00082 Subtilase family CP97_04990 PF00919 Uncharacterized protein family UPF0004 CP97_04990 PF04055 Radical SAM superfamily CP97_04990 PF18693 TRAM domain CP97_05005 PF01975 Survival protein SurE CP97_05010 PF02403 Seryl-tRNA synthetase N-terminal domain CP97_05010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP97_05030 PF01464 Transglycosylase SLT domain CP97_05046 PF00589 Phage integrase family CP97_05046 PF02899 Phage integrase, N-terminal SAM-like domain CP97_05056 PF02899 Phage integrase, N-terminal SAM-like domain CP97_05056 PF00589 Phage integrase family CP97_05065 PF02195 ParB-like nuclease domain CP97_05070 PF18818 Metallopeptidase superfamily domain CP97_05070 PF08401 Domain of unknown function (DUF1738) CP97_05100 PF00436 Single-strand binding protein family CP97_05116 PF00589 Phage integrase family CP97_05116 PF14659 Phage integrase, N-terminal SAM-like domain CP97_05130 PF07669 Eco57I restriction-modification methylase CP97_05150 PF00436 Single-strand binding protein family CP97_05170 PF01609 Transposase DDE domain CP97_05180 PF10412 Type IV secretion-system coupling protein DNA-binding domain CP97_05180 PF12615 F sex factor protein N terminal CP97_05185 PF18272 single-stranded DNA binding TraI N-terminal subdomain CP97_05185 PF07057 DNA helicase TraI CP97_05185 PF18340 DNA relaxase TraI 2B/2B-like domain CP97_05185 PF08751 TrwC relaxase CP97_05210 PF17158 Membrane-associated sensor, integral membrane domain CP97_05210 PF00990 Diguanylate cyclase, GGDEF domain CP97_05270 PF06122 Conjugative relaxosome accessory transposon protein CP97_05290 PF06834 TraU protein CP97_05380 PF02583 Metal-sensitive transcriptional repressor CP97_05385 PF00665 Integrase core domain CP97_05395 PF01070 FMN-dependent dehydrogenase CP97_05400 PF07995 Glucose / Sorbosone dehydrogenase CP97_05420 PF07715 TonB-dependent Receptor Plug Domain CP97_05420 PF00593 TonB dependent receptor CP97_05440 PF03239 Iron permease FTR1 family CP97_05450 PF09278 MerR, DNA binding CP97_05450 PF00376 MerR family regulatory protein CP97_05460 PF13340 Putative transposase of IS4/5 family (DUF4096) CP97_05465 PF13340 Putative transposase of IS4/5 family (DUF4096) CP97_05480 PF02321 Outer membrane efflux protein CP97_05490 PF00689 Cation transporting ATPase, C-terminus CP97_05490 PF00690 Cation transporter/ATPase, N-terminus CP97_05495 PF03636 Glycosyl hydrolase family 65, N-terminal domain CP97_05495 PF03633 Glycosyl hydrolase family 65, C-terminal domain CP97_05495 PF03632 Glycosyl hydrolase family 65 central catalytic domain CP97_05500 PF13419 Haloacid dehalogenase-like hydrolase CP97_05505 PF00294 pfkB family carbohydrate kinase CP97_05510 PF02652 L-lactate permease CP97_05515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CP97_05515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CP97_05525 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CP97_05525 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CP97_05530 PF13276 HTH-like domain CP97_05530 PF13683 Integrase core domain CP97_05535 PF02371 Transposase IS116/IS110/IS902 family CP97_05535 PF01548 Transposase CP97_05550 PF00665 Integrase core domain CP97_05560 PF00394 Multicopper oxidase CP97_05560 PF07731 Multicopper oxidase CP97_05560 PF07732 Multicopper oxidase CP97_05570 PF13801 Heavy-metal resistance CP97_05590 PF13581 Histidine kinase-like ATPase domain CP97_05590 PF07536 HWE histidine kinase CP97_05590 PF13426 PAS domain CP97_05615 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CP97_05615 PF14572 Phosphoribosyl synthetase-associated domain CP97_05620 PF02885 Glycosyl transferase family, helical bundle domain CP97_05620 PF00591 Glycosyl transferase family, a/b domain CP97_05620 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CP97_05625 PF10996 Beta-Casp domain CP97_05625 PF00753 Metallo-beta-lactamase superfamily CP97_05625 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CP97_05635 PF02770 Acyl-CoA dehydrogenase, middle domain CP97_05635 PF18158 Adaptive response protein AidB N-terminal domain CP97_05635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP97_05640 PF00403 Heavy-metal-associated domain CP97_05645 PF00294 pfkB family carbohydrate kinase CP97_05660 PF00999 Sodium/hydrogen exchanger family CP97_05665 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CP97_05665 PF02896 PEP-utilising enzyme, TIM barrel domain CP97_05665 PF00391 PEP-utilising enzyme, mobile domain CP97_05670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CP97_05670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CP97_05690 PF13396 Phospholipase_D-nuclease N-terminal CP97_05690 PF13091 PLD-like domain CP97_05695 PF10091 Putative glucoamylase CP97_05695 PF06165 Glycosyltransferase family 36 CP97_05695 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CP97_05730 PF01027 Inhibitor of apoptosis-promoting Bax1 CP97_05740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CP97_05740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CP97_05740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CP97_05740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CP97_05745 PF00920 Dehydratase family CP97_05755 PF00274 Fructose-bisphosphate aldolase class-I CP97_05775 PF05275 Copper resistance protein B precursor (CopB) CP97_05780 PF07732 Multicopper oxidase CP97_05780 PF00394 Multicopper oxidase CP97_05780 PF07731 Multicopper oxidase CP97_05790 PF13801 Heavy-metal resistance CP97_05830 PF04945 YHS domain CP97_05875 PF02583 Metal-sensitive transcriptional repressor CP97_05890 PF00665 Integrase core domain CP97_05915 PF01343 Peptidase family S49 CP97_05920 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CP97_05920 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CP97_05925 PF01979 Amidohydrolase family CP97_05945 PF13614 AAA domain CP97_05955 PF04235 Protein of unknown function (DUF418) CP97_05965 PF00210 Ferritin-like domain CP97_05975 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CP97_05975 PF10531 SLBB domain CP97_05975 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CP97_05980 PF12804 MobA-like NTP transferase domain CP97_05985 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CP97_05985 PF12838 4Fe-4S dicluster domain CP97_05985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP97_05985 PF00384 Molybdopterin oxidoreductase CP97_05985 PF01568 Molydopterin dinucleotide binding domain CP97_05990 PF02634 FdhD/NarQ family CP97_05995 PF01794 Ferric reductase like transmembrane component CP97_06010 PF00171 Aldehyde dehydrogenase family CP97_06015 PF00378 Enoyl-CoA hydratase/isomerase CP97_06020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CP97_06020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CP97_06035 PF00196 Bacterial regulatory proteins, luxR family CP97_06035 PF00072 Response regulator receiver domain CP97_06040 PF02585 GlcNAc-PI de-N-acetylase CP97_06045 PF01370 NAD dependent epimerase/dehydratase family CP97_06045 PF02911 Formyl transferase, C-terminal domain CP97_06045 PF00551 Formyl transferase CP97_06050 PF00534 Glycosyl transferases group 1 CP97_06050 PF13439 Glycosyltransferase Family 4 CP97_06060 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CP97_06080 PF13439 Glycosyltransferase Family 4 CP97_06080 PF00534 Glycosyl transferases group 1 CP97_06110 PF02397 Bacterial sugar transferase CP97_06125 PF13439 Glycosyltransferase Family 4 CP97_06125 PF00534 Glycosyl transferases group 1 CP97_06135 PF00483 Nucleotidyl transferase CP97_06140 PF16363 GDP-mannose 4,6 dehydratase CP97_06145 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CP97_06150 PF08421 Putative zinc binding domain CP97_06150 PF08484 C-methyltransferase C-terminal domain CP97_06155 PF01370 NAD dependent epimerase/dehydratase family CP97_06160 PF00535 Glycosyl transferase family 2 CP97_06180 PF08448 PAS fold CP97_06180 PF00563 EAL domain CP97_06180 PF00990 Diguanylate cyclase, GGDEF domain CP97_06180 PF08447 PAS fold CP97_06190 PF00072 Response regulator receiver domain CP97_06200 PF00512 His Kinase A (phospho-acceptor) domain CP97_06200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_06200 PF00072 Response regulator receiver domain CP97_06200 PF09308 LuxQ, periplasmic CP97_06205 PF00072 Response regulator receiver domain CP97_06215 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CP97_06215 PF01048 Phosphorylase superfamily CP97_06220 PF17936 Bacterial Ig domain CP97_06220 PF02872 5'-nucleotidase, C-terminal domain CP97_06220 PF00149 Calcineurin-like phosphoesterase CP97_06225 PF00593 TonB dependent receptor CP97_06235 PF01773 Na+ dependent nucleoside transporter N-terminus CP97_06235 PF07662 Na+ dependent nucleoside transporter C-terminus CP97_06235 PF07670 Nucleoside recognition CP97_06260 PF13426 PAS domain CP97_06260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_06260 PF00672 HAMP domain CP97_06260 PF00512 His Kinase A (phospho-acceptor) domain CP97_06270 PF00486 Transcriptional regulatory protein, C terminal CP97_06270 PF00072 Response regulator receiver domain CP97_06275 PF04055 Radical SAM superfamily CP97_06275 PF06968 Biotin and Thiamin Synthesis associated domain CP97_06290 PF00202 Aminotransferase class-III CP97_06295 PF14497 Glutathione S-transferase, C-terminal domain CP97_06295 PF02798 Glutathione S-transferase, N-terminal domain CP97_06300 PF04209 homogentisate 1,2-dioxygenase CP97_06310 PF02678 Pirin CP97_06310 PF17954 Quercetinase C-terminal cupin domain CP97_06315 PF12704 MacB-like periplasmic core domain CP97_06315 PF02687 FtsX-like permease family CP97_06315 PF00005 ABC transporter CP97_06320 PF02687 FtsX-like permease family CP97_06320 PF00005 ABC transporter CP97_06320 PF12704 MacB-like periplasmic core domain CP97_06345 PF02515 CoA-transferase family III CP97_06350 PF00691 OmpA family CP97_06355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP97_06355 PF02770 Acyl-CoA dehydrogenase, middle domain CP97_06355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP97_06380 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CP97_06380 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CP97_06385 PF00814 Glycoprotease family CP97_06390 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CP97_06390 PF03900 Porphobilinogen deaminase, C-terminal domain CP97_06405 PF01494 FAD binding domain CP97_06410 PF11412 Disulphide bond corrector protein DsbC CP97_06410 PF02683 Cytochrome C biogenesis protein transmembrane region CP97_06410 PF00085 Thioredoxin CP97_06420 PF04851 Type III restriction enzyme, res subunit CP97_06420 PF17757 UvrB interaction domain CP97_06420 PF02151 UvrB/uvrC motif CP97_06420 PF00271 Helicase conserved C-terminal domain CP97_06420 PF12344 Ultra-violet resistance protein B CP97_06440 PF12697 Alpha/beta hydrolase family CP97_06440 PF08241 Methyltransferase domain CP97_06445 PF14403 Circularly permuted ATP-grasp type 2 CP97_06475 PF00266 Aminotransferase class-V CP97_06480 PF01842 ACT domain CP97_06480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CP97_06480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CP97_06485 PF13393 Histidyl-tRNA synthetase CP97_06490 PF00248 Aldo/keto reductase family CP97_06495 PF00709 Adenylosuccinate synthetase CP97_06505 PF17763 Glutaminase/Asparaginase C-terminal domain CP97_06505 PF00710 Asparaginase, N-terminal CP97_06515 PF00085 Thioredoxin CP97_06520 PF00206 Lyase CP97_06520 PF14698 Argininosuccinate lyase C-terminal CP97_06530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CP97_06530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CP97_06535 PF10414 Sirohaem synthase dimerisation region CP97_06535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CP97_06535 PF14824 Sirohaem biosynthesis protein central CP97_06540 PF03652 Holliday junction resolvase CP97_06550 PF01594 AI-2E family transporter CP97_06555 PF10502 Signal peptidase, peptidase S26 CP97_06560 PF01648 4'-phosphopantetheinyl transferase superfamily CP97_06565 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CP97_06570 PF00156 Phosphoribosyl transferase domain CP97_06575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CP97_06575 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CP97_06580 PF00115 Cytochrome C and Quinol oxidase polypeptide I CP97_06585 PF01040 UbiA prenyltransferase family CP97_06595 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CP97_06600 PF00510 Cytochrome c oxidase subunit III CP97_06615 PF14821 Threonine synthase N terminus CP97_06615 PF00291 Pyridoxal-phosphate dependent enzyme CP97_06640 PF04055 Radical SAM superfamily CP97_06640 PF06463 Molybdenum Cofactor Synthesis C CP97_06650 PF02391 MoaE protein CP97_06665 PF00829 Ribosomal prokaryotic L21 protein CP97_06670 PF01016 Ribosomal L27 protein CP97_06695 PF01979 Amidohydrolase family CP97_06700 PF00892 EamA-like transporter family CP97_06705 PF00171 Aldehyde dehydrogenase family CP97_06710 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CP97_06715 PF12697 Alpha/beta hydrolase family CP97_06720 PF00534 Glycosyl transferases group 1 CP97_06720 PF13439 Glycosyltransferase Family 4 CP97_06730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CP97_06730 PF13360 PQQ-like domain CP97_06740 PF01040 UbiA prenyltransferase family CP97_06745 PF04452 RNA methyltransferase CP97_06750 PF04107 Glutamate-cysteine ligase family 2(GCS2) CP97_06760 PF00376 MerR family regulatory protein CP97_06760 PF09278 MerR, DNA binding CP97_06765 PF02463 RecF/RecN/SMC N terminal domain CP97_06785 PF14815 NUDIX domain CP97_06785 PF00730 HhH-GPD superfamily base excision DNA repair protein CP97_06795 PF00144 Beta-lactamase CP97_06800 PF09297 NADH pyrophosphatase zinc ribbon domain CP97_06800 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CP97_06800 PF00293 NUDIX domain CP97_06815 PF01769 Divalent cation transporter CP97_06815 PF03448 MgtE intracellular N domain CP97_06815 PF00571 CBS domain CP97_06820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CP97_06825 PF03466 LysR substrate binding domain CP97_06825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP97_06830 PF00571 CBS domain CP97_06830 PF03471 Transporter associated domain CP97_06835 PF02130 Uncharacterized protein family UPF0054 CP97_06840 PF02562 PhoH-like protein CP97_06845 PF04055 Radical SAM superfamily CP97_06845 PF01938 TRAM domain CP97_06845 PF00919 Uncharacterized protein family UPF0004 CP97_06855 PF01475 Ferric uptake regulator family CP97_06860 PF05443 ROS/MUCR transcriptional regulator protein CP97_06865 PF00583 Acetyltransferase (GNAT) family CP97_06870 PF00814 Glycoprotease family CP97_06875 PF00881 Nitroreductase family CP97_06880 PF01106 NifU-like domain CP97_06885 PF05193 Peptidase M16 inactive domain CP97_06885 PF00675 Insulinase (Peptidase family M16) CP97_06890 PF01474 Class-II DAHP synthetase family CP97_06900 PF03781 Sulfatase-modifying factor enzyme 1 CP97_06900 PF12867 DinB superfamily CP97_06905 PF10017 Histidine-specific methyltransferase, SAM-dependent CP97_06925 PF02798 Glutathione S-transferase, N-terminal domain CP97_06935 PF00581 Rhodanese-like domain CP97_06935 PF17773 UPF0176 acylphosphatase like domain CP97_06945 PF01063 Amino-transferase class IV CP97_06970 PF01728 FtsJ-like methyltransferase CP97_06970 PF01479 S4 domain CP97_06985 PF02565 Recombination protein O C terminal CP97_06985 PF11967 Recombination protein O N terminal CP97_06990 PF00180 Isocitrate/isopropylmalate dehydrogenase CP97_07010 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CP97_07010 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase CP97_07015 PF01053 Cys/Met metabolism PLP-dependent enzyme CP97_07020 PF04379 ApaG domain CP97_07025 PF03466 LysR substrate binding domain CP97_07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP97_07055 PF01527 Transposase CP97_07060 PF13276 HTH-like domain CP97_07060 PF13683 Integrase core domain CP97_07075 PF01609 Transposase DDE domain CP97_07085 PF00164 Ribosomal protein S12/S23 CP97_07090 PF00177 Ribosomal protein S7p/S5e CP97_07095 PF14492 Elongation Factor G, domain II CP97_07095 PF00009 Elongation factor Tu GTP binding domain CP97_07095 PF03144 Elongation factor Tu domain 2 CP97_07095 PF00679 Elongation factor G C-terminus CP97_07095 PF03764 Elongation factor G, domain IV CP97_07100 PF03144 Elongation factor Tu domain 2 CP97_07100 PF03143 Elongation factor Tu C-terminal domain CP97_07100 PF00009 Elongation factor Tu GTP binding domain CP97_07110 PF00338 Ribosomal protein S10p/S20e CP97_07115 PF00297 Ribosomal protein L3 CP97_07120 PF00573 Ribosomal protein L4/L1 family CP97_07125 PF00276 Ribosomal protein L23 CP97_07130 PF03947 Ribosomal Proteins L2, C-terminal domain CP97_07130 PF00181 Ribosomal Proteins L2, RNA binding domain CP97_07135 PF00203 Ribosomal protein S19 CP97_07140 PF00237 Ribosomal protein L22p/L17e CP97_07145 PF00189 Ribosomal protein S3, C-terminal domain CP97_07145 PF07650 KH domain CP97_07150 PF00252 Ribosomal protein L16p/L10e CP97_07155 PF00831 Ribosomal L29 protein CP97_07160 PF00366 Ribosomal protein S17 CP97_07165 PF00238 Ribosomal protein L14p/L23e CP97_07170 PF00467 KOW motif CP97_07170 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CP97_07175 PF00281 Ribosomal protein L5 CP97_07175 PF00673 ribosomal L5P family C-terminus CP97_07180 PF00253 Ribosomal protein S14p/S29e CP97_07185 PF00410 Ribosomal protein S8 CP97_07190 PF00347 Ribosomal protein L6 CP97_07195 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CP97_07200 PF00333 Ribosomal protein S5, N-terminal domain CP97_07200 PF03719 Ribosomal protein S5, C-terminal domain CP97_07205 PF00327 Ribosomal protein L30p/L7e CP97_07210 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CP97_07215 PF00344 SecY translocase CP97_07220 PF05191 Adenylate kinase, active site lid CP97_07230 PF00416 Ribosomal protein S13/S18 CP97_07235 PF00411 Ribosomal protein S11 CP97_07240 PF01000 RNA polymerase Rpb3/RpoA insert domain CP97_07240 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CP97_07240 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CP97_07245 PF01196 Ribosomal protein L17 CP97_07250 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CP97_07250 PF00326 Prolyl oligopeptidase family CP97_07265 PF03458 UPF0126 domain CP97_07285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP97_07285 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_07290 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CP97_07290 PF00364 Biotin-requiring enzyme CP97_07290 PF02817 e3 binding domain CP97_07295 PF00676 Dehydrogenase E1 component CP97_07295 PF16870 2-oxoglutarate dehydrogenase C-terminal CP97_07295 PF02779 Transketolase, pyrimidine binding domain CP97_07295 PF16078 2-oxoglutarate dehydrogenase N-terminus CP97_07300 PF00549 CoA-ligase CP97_07300 PF02629 CoA binding domain CP97_07310 PF00056 lactate/malate dehydrogenase, NAD binding domain CP97_07310 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CP97_07325 PF07715 TonB-dependent Receptor Plug Domain CP97_07325 PF00593 TonB dependent receptor CP97_07335 PF01032 FecCD transport family CP97_07340 PF00005 ABC transporter CP97_07345 PF01432 Peptidase family M3 CP97_07360 PF02834 LigT like Phosphoesterase CP97_07365 PF03895 YadA-like membrane anchor domain CP97_07365 PF05662 Coiled stalk of trimeric autotransporter adhesin CP97_07365 PF05658 Head domain of trimeric autotransporter adhesin CP97_07370 PF13276 HTH-like domain CP97_07370 PF13683 Integrase core domain CP97_07375 PF01548 Transposase CP97_07375 PF02371 Transposase IS116/IS110/IS902 family CP97_07380 PF01527 Transposase CP97_07390 PF17755 UvrA DNA-binding domain CP97_07390 PF17760 UvrA interaction domain CP97_07405 PF03330 Lytic transglycolase CP97_07415 PF00764 Arginosuccinate synthase CP97_07425 PF01554 MatE CP97_07440 PF00174 Oxidoreductase molybdopterin binding domain CP97_07450 PF00106 short chain dehydrogenase CP97_07455 PF00795 Carbon-nitrogen hydrolase CP97_07455 PF02540 NAD synthase CP97_07465 PF04055 Radical SAM superfamily CP97_07470 PF13505 Outer membrane protein beta-barrel domain CP97_07485 PF01145 SPFH domain / Band 7 family CP97_07485 PF15975 Flotillin CP97_07495 PF01272 Transcription elongation factor, GreA/GreB, C-term CP97_07495 PF03449 Transcription elongation factor, N-terminal CP97_07500 PF01464 Transglycosylase SLT domain CP97_07505 PF00701 Dihydrodipicolinate synthetase family CP97_07515 PF01668 SmpB protein CP97_07525 PF00072 Response regulator receiver domain CP97_07525 PF08448 PAS fold CP97_07525 PF00512 His Kinase A (phospho-acceptor) domain CP97_07525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_07525 PF13188 PAS domain CP97_07540 PF00154 recA bacterial DNA recombination protein CP97_07545 PF05175 Methyltransferase small domain CP97_07550 PF02272 DHHA1 domain CP97_07550 PF01411 tRNA synthetases class II (A) CP97_07550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CP97_07555 PF00999 Sodium/hydrogen exchanger family CP97_07555 PF02254 TrkA-N domain CP97_07565 PF00474 Sodium:solute symporter family CP97_07570 PF00583 Acetyltransferase (GNAT) family CP97_07570 PF00795 Carbon-nitrogen hydrolase CP97_07575 PF00180 Isocitrate/isopropylmalate dehydrogenase CP97_07580 PF01494 FAD binding domain CP97_07590 PF00195 Chalcone and stilbene synthases, N-terminal domain CP97_07590 PF02797 Chalcone and stilbene synthases, C-terminal domain CP97_07595 PF03060 Nitronate monooxygenase CP97_07600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP97_07600 PF12806 Acetyl-CoA dehydrogenase C-terminal like CP97_07600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP97_07600 PF02770 Acyl-CoA dehydrogenase, middle domain CP97_07605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CP97_07605 PF00378 Enoyl-CoA hydratase/isomerase CP97_07605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CP97_07610 PF00108 Thiolase, N-terminal domain CP97_07610 PF02803 Thiolase, C-terminal domain CP97_07615 PF13193 AMP-binding enzyme C-terminal domain CP97_07615 PF00501 AMP-binding enzyme CP97_07620 PF09278 MerR, DNA binding CP97_07620 PF00376 MerR family regulatory protein CP97_07630 PF00072 Response regulator receiver domain CP97_07645 PF01565 FAD binding domain CP97_07645 PF02913 FAD linked oxidases, C-terminal domain CP97_07655 PF00271 Helicase conserved C-terminal domain CP97_07655 PF00270 DEAD/DEAH box helicase CP97_07660 PF00580 UvrD/REP helicase N-terminal domain CP97_07660 PF13361 UvrD-like helicase C-terminal domain CP97_07675 PF00849 RNA pseudouridylate synthase CP97_07675 PF01479 S4 domain CP97_07680 PF07690 Major Facilitator Superfamily CP97_07685 PF08245 Mur ligase middle domain CP97_07685 PF02875 Mur ligase family, glutamate ligase domain CP97_07690 PF17848 Acetyl-coA carboxylase zinc finger domain CP97_07690 PF01039 Carboxyl transferase domain CP97_07695 PF00290 Tryptophan synthase alpha chain CP97_07700 PF00291 Pyridoxal-phosphate dependent enzyme CP97_07705 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CP97_07715 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CP97_07725 PF10397 Adenylosuccinate lyase C-terminus CP97_07725 PF00206 Lyase CP97_07730 PF04002 RadC-like JAB domain CP97_07755 PF00119 ATP synthase A chain CP97_07760 PF00137 ATP synthase subunit C CP97_07765 PF00430 ATP synthase B/B' CF(0) CP97_07770 PF00430 ATP synthase B/B' CF(0) CP97_07775 PF00753 Metallo-beta-lactamase superfamily CP97_07775 PF16123 Hydroxyacylglutathione hydrolase C-terminus CP97_07780 PF00575 S1 RNA binding domain CP97_07785 PF02224 Cytidylate kinase CP97_07795 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CP97_07810 PF02881 SRP54-type protein, helical bundle domain CP97_07810 PF02978 Signal peptide binding domain CP97_07810 PF00448 SRP54-type protein, GTPase domain CP97_07815 PF00886 Ribosomal protein S16 CP97_07820 PF01782 RimM N-terminal domain CP97_07820 PF05239 PRC-barrel domain CP97_07830 PF01746 tRNA (Guanine-1)-methyltransferase CP97_07835 PF01245 Ribosomal protein L19 CP97_07840 PF02774 Semialdehyde dehydrogenase, dimerisation domain CP97_07840 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP97_07860 PF01740 STAS domain CP97_07860 PF00916 Sulfate permease family CP97_07865 PF03948 Ribosomal protein L9, C-terminal domain CP97_07865 PF01281 Ribosomal protein L9, N-terminal domain CP97_07870 PF01084 Ribosomal protein S18 CP97_07875 PF01250 Ribosomal protein S6 CP97_07880 PF05661 Protein of unknown function (DUF808) CP97_07890 PF08245 Mur ligase middle domain CP97_07890 PF02875 Mur ligase family, glutamate ligase domain CP97_07890 PF01225 Mur ligase family, catalytic domain CP97_07900 PF00698 Acyl transferase domain CP97_07915 PF02767 DNA polymerase III beta subunit, central domain CP97_07915 PF02768 DNA polymerase III beta subunit, C-terminal domain CP97_07915 PF00712 DNA polymerase III beta subunit, N-terminal domain CP97_07920 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_07925 PF00563 EAL domain CP97_07925 PF13188 PAS domain CP97_07925 PF03707 Bacterial signalling protein N terminal repeat CP97_07925 PF00990 Diguanylate cyclase, GGDEF domain CP97_07930 PF00679 Elongation factor G C-terminus CP97_07930 PF06421 GTP-binding protein LepA C-terminus CP97_07930 PF00009 Elongation factor Tu GTP binding domain CP97_07945 PF07715 TonB-dependent Receptor Plug Domain CP97_07945 PF00593 TonB dependent receptor CP97_07970 PF13525 Outer membrane lipoprotein CP97_07980 PF13476 AAA domain CP97_07980 PF02463 RecF/RecN/SMC N terminal domain CP97_07985 PF01653 NAD-dependent DNA ligase adenylation domain CP97_07985 PF03120 NAD-dependent DNA ligase OB-fold domain CP97_07985 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CP97_07985 PF12826 Helix-hairpin-helix motif CP97_07985 PF00533 BRCA1 C Terminus (BRCT) domain CP97_07990 PF00106 short chain dehydrogenase CP97_08005 PF00753 Metallo-beta-lactamase superfamily CP97_08015 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CP97_08020 PF02910 Fumarate reductase flavoprotein C-term CP97_08020 PF00890 FAD binding domain CP97_08035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CP97_08050 PF01070 FMN-dependent dehydrogenase CP97_08060 PF08281 Sigma-70, region 4 CP97_08060 PF04542 Sigma-70 region 2 CP97_08065 PF03965 Penicillinase repressor CP97_08075 PF04228 Putative neutral zinc metallopeptidase CP97_08085 PF00571 CBS domain CP97_08085 PF00478 IMP dehydrogenase / GMP reductase domain CP97_08095 PF01029 NusB family CP97_08095 PF01189 16S rRNA methyltransferase RsmB/F CP97_08105 PF00293 NUDIX domain CP97_08110 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CP97_08110 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CP97_08110 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CP97_08115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP97_08125 PF00875 DNA photolyase CP97_08125 PF03441 FAD binding domain of DNA photolyase CP97_08135 PF00144 Beta-lactamase CP97_08140 PF02350 UDP-N-acetylglucosamine 2-epimerase CP97_08145 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CP97_08145 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CP97_08145 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CP97_08160 PF00106 short chain dehydrogenase CP97_08165 PF00156 Phosphoribosyl transferase domain CP97_08165 PF13537 Glutamine amidotransferase domain CP97_08175 PF01370 NAD dependent epimerase/dehydratase family CP97_08180 PF00303 Thymidylate synthase CP97_08185 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal CP97_08185 PF00676 Dehydrogenase E1 component CP97_08190 PF02780 Transketolase, C-terminal domain CP97_08190 PF02779 Transketolase, pyrimidine binding domain CP97_08195 PF02817 e3 binding domain CP97_08195 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CP97_08195 PF00364 Biotin-requiring enzyme CP97_08210 PF01812 5-formyltetrahydrofolate cyclo-ligase family CP97_08225 PF02780 Transketolase, C-terminal domain CP97_08225 PF00456 Transketolase, thiamine diphosphate binding domain CP97_08225 PF02779 Transketolase, pyrimidine binding domain CP97_08230 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CP97_08230 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CP97_08235 PF00162 Phosphoglycerate kinase CP97_08250 PF03358 NADPH-dependent FMN reductase CP97_08250 PF01566 Natural resistance-associated macrophage protein CP97_08255 PF00274 Fructose-bisphosphate aldolase class-I CP97_08260 PF02581 Thiamine monophosphate synthase CP97_08270 PF01476 LysM domain CP97_08270 PF03734 L,D-transpeptidase catalytic domain CP97_08285 PF09285 Elongation factor P, C-terminal CP97_08285 PF01132 Elongation factor P (EF-P) OB domain CP97_08285 PF08207 Elongation factor P (EF-P) KOW-like domain CP97_08290 PF00459 Inositol monophosphatase family CP97_08300 PF02080 TrkA-C domain CP97_08300 PF03600 Citrate transporter CP97_08310 PF02397 Bacterial sugar transferase CP97_08320 PF00072 Response regulator receiver domain CP97_08320 PF00158 Sigma-54 interaction domain CP97_08320 PF02954 Bacterial regulatory protein, Fis family CP97_08325 PF13593 SBF-like CPA transporter family (DUF4137) CP97_08335 PF02548 Ketopantoate hydroxymethyltransferase CP97_08340 PF00209 Sodium:neurotransmitter symporter family CP97_08360 PF00565 Staphylococcal nuclease homologue CP97_08370 PF00356 Bacterial regulatory proteins, lacI family CP97_08380 PF00512 His Kinase A (phospho-acceptor) domain CP97_08380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_08385 PF01037 Lrp/AsnC ligand binding domain CP97_08395 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP97_08395 PF02785 Biotin carboxylase C-terminal domain CP97_08395 PF00289 Biotin carboxylase, N-terminal domain CP97_08400 PF00364 Biotin-requiring enzyme CP97_08405 PF01220 Dehydroquinase class II CP97_08420 PF02699 Preprotein translocase subunit CP97_08425 PF07549 SecD/SecF GG Motif CP97_08425 PF02355 Protein export membrane protein CP97_08430 PF07549 SecD/SecF GG Motif CP97_08430 PF02355 Protein export membrane protein CP97_08435 PF13439 Glycosyltransferase Family 4 CP97_08435 PF00534 Glycosyl transferases group 1 CP97_08455 PF00005 ABC transporter CP97_08455 PF16326 ABC transporter C-terminal domain CP97_08470 PF00486 Transcriptional regulatory protein, C terminal CP97_08470 PF00072 Response regulator receiver domain CP97_08475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_08485 PF02153 Prephenate dehydrogenase CP97_08485 PF01817 Chorismate mutase type II CP97_08490 PF00348 Polyprenyl synthetase CP97_08495 PF00270 DEAD/DEAH box helicase CP97_08495 PF08482 ATP-dependent helicase C-terminal CP97_08495 PF00271 Helicase conserved C-terminal domain CP97_08495 PF04408 Helicase associated domain (HA2) CP97_08505 PF12169 DNA polymerase III subunits gamma and tau domain III CP97_08505 PF12170 DNA polymerase III tau subunit V interacting with alpha CP97_08505 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CP97_08510 PF02575 YbaB/EbfC DNA-binding family CP97_08515 PF02190 ATP-dependent protease La (LON) substrate-binding domain CP97_08515 PF05362 Lon protease (S16) C-terminal proteolytic domain CP97_08515 PF00004 ATPase family associated with various cellular activities (AAA) CP97_08520 PF00216 Bacterial DNA-binding protein CP97_08525 PF08032 RNA 2'-O ribose methyltransferase substrate binding CP97_08525 PF00588 SpoU rRNA Methylase family CP97_08555 PF00593 TonB dependent receptor CP97_08555 PF07715 TonB-dependent Receptor Plug Domain CP97_08580 PF13193 AMP-binding enzyme C-terminal domain CP97_08580 PF00501 AMP-binding enzyme CP97_08580 PF16177 Acetyl-coenzyme A synthetase N-terminus CP97_08585 PF01274 Malate synthase CP97_08590 PF00463 Isocitrate lyase family CP97_08595 PF06114 IrrE N-terminal-like domain CP97_08595 PF09856 Predicted transcriptional regulator (DUF2083) CP97_08595 PF01381 Helix-turn-helix CP97_08600 PF02666 Phosphatidylserine decarboxylase CP97_08610 PF00318 Ribosomal protein S2 CP97_08615 PF00889 Elongation factor TS CP97_08620 PF00696 Amino acid kinase family CP97_08625 PF01765 Ribosome recycling factor CP97_08630 PF01255 Putative undecaprenyl diphosphate synthase CP97_08640 PF13288 DXP reductoisomerase C-terminal domain CP97_08640 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CP97_08640 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CP97_08645 PF02163 Peptidase family M50 CP97_08645 PF17820 PDZ domain CP97_08650 PF07244 Surface antigen variable number repeat CP97_08650 PF01103 Surface antigen CP97_08660 PF07977 FabA-like domain CP97_08665 PF01197 Ribosomal protein L31 CP97_08690 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CP97_08690 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CP97_08695 PF01578 Cytochrome C assembly protein CP97_08700 PF03100 CcmE CP97_08705 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CP97_08705 PF01578 Cytochrome C assembly protein CP97_08725 PF02705 K+ potassium transporter CP97_08730 PF04279 Intracellular septation protein A CP97_08735 PF00448 SRP54-type protein, GTPase domain CP97_08735 PF02881 SRP54-type protein, helical bundle domain CP97_08740 PF04055 Radical SAM superfamily CP97_08740 PF00919 Uncharacterized protein family UPF0004 CP97_08745 PF01678 Diaminopimelate epimerase CP97_08760 PF00205 Thiamine pyrophosphate enzyme, central domain CP97_08760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP97_08760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP97_08770 PF01066 CDP-alcohol phosphatidyltransferase CP97_08775 PF03466 LysR substrate binding domain CP97_08775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP97_08780 PF00570 HRDC domain CP97_08780 PF01612 3'-5' exonuclease CP97_08785 PF01336 OB-fold nucleic acid binding domain CP97_08785 PF02938 GAD domain CP97_08785 PF00152 tRNA synthetases class II (D, K and N) CP97_08795 PF00550 Phosphopantetheine attachment site CP97_08800 PF00109 Beta-ketoacyl synthase, N-terminal domain CP97_08800 PF02801 Beta-ketoacyl synthase, C-terminal domain CP97_08805 PF02618 YceG-like family CP97_08825 PF00378 Enoyl-CoA hydratase/isomerase CP97_08840 PF13607 Succinyl-CoA ligase like flavodoxin domain CP97_08840 PF13380 CoA binding domain CP97_08845 PF02770 Acyl-CoA dehydrogenase, middle domain CP97_08845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP97_08845 PF12806 Acetyl-CoA dehydrogenase C-terminal like CP97_08845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP97_08850 PF00106 short chain dehydrogenase CP97_08855 PF00593 TonB dependent receptor CP97_08855 PF07715 TonB-dependent Receptor Plug Domain CP97_08860 PF00155 Aminotransferase class I and II CP97_08870 PF13649 Methyltransferase domain CP97_08880 PF13188 PAS domain CP97_08880 PF08448 PAS fold CP97_08880 PF00512 His Kinase A (phospho-acceptor) domain CP97_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_08880 PF00072 Response regulator receiver domain CP97_08885 PF06745 KaiC CP97_08890 PF02358 Trehalose-phosphatase CP97_08895 PF00723 Glycosyl hydrolases family 15 CP97_08900 PF00982 Glycosyltransferase family 20 CP97_08910 PF00291 Pyridoxal-phosphate dependent enzyme CP97_08915 PF01916 Deoxyhypusine synthase CP97_08935 PF04011 LemA family CP97_08945 PF13188 PAS domain CP97_08945 PF00563 EAL domain CP97_08945 PF00990 Diguanylate cyclase, GGDEF domain CP97_08945 PF03707 Bacterial signalling protein N terminal repeat CP97_08950 PF00155 Aminotransferase class I and II CP97_08955 PF01177 Asp/Glu/Hydantoin racemase CP97_08960 PF02660 Glycerol-3-phosphate acyltransferase CP97_08965 PF17782 DprA winged helix domain CP97_08965 PF02481 DNA recombination-mediator protein A CP97_08975 PF01396 Topoisomerase DNA binding C4 zinc finger CP97_08975 PF13368 Topoisomerase C-terminal repeat CP97_08975 PF01751 Toprim domain CP97_08975 PF01131 DNA topoisomerase CP97_08985 PF01926 50S ribosome-binding GTPase CP97_08985 PF07650 KH domain CP97_08990 PF00035 Double-stranded RNA binding motif CP97_08990 PF14622 Ribonuclease-III-like CP97_08995 PF10502 Signal peptidase, peptidase S26 CP97_09000 PF00342 Phosphoglucose isomerase CP97_09005 PF00271 Helicase conserved C-terminal domain CP97_09005 PF00270 DEAD/DEAH box helicase CP97_09015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP97_09015 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_09030 PF01112 Asparaginase CP97_09035 PF01761 3-dehydroquinate synthase CP97_09040 PF01202 Shikimate kinase CP97_09055 PF02899 Phage integrase, N-terminal SAM-like domain CP97_09055 PF00589 Phage integrase family CP97_09060 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CP97_09065 PF01435 Peptidase family M48 CP97_09075 PF00293 NUDIX domain CP97_09090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP97_09090 PF00529 HlyD membrane-fusion protein of T1SS CP97_09095 PF00873 AcrB/AcrD/AcrF family CP97_09100 PF02321 Outer membrane efflux protein CP97_09110 PF13396 Phospholipase_D-nuclease N-terminal CP97_09110 PF13091 PLD-like domain CP97_09115 PF01227 GTP cyclohydrolase I CP97_09120 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CP97_09125 PF00462 Glutaredoxin CP97_09125 PF08534 Redoxin CP97_09130 PF05221 S-adenosyl-L-homocysteine hydrolase CP97_09130 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CP97_09135 PF00512 His Kinase A (phospho-acceptor) domain CP97_09135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_09140 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CP97_09145 PF01636 Phosphotransferase enzyme family CP97_09150 PF12804 MobA-like NTP transferase domain CP97_09155 PF12705 PD-(D/E)XK nuclease superfamily CP97_09160 PF00580 UvrD/REP helicase N-terminal domain CP97_09160 PF12705 PD-(D/E)XK nuclease superfamily CP97_09160 PF13361 UvrD-like helicase C-terminal domain CP97_09165 PF00085 Thioredoxin CP97_09170 PF00459 Inositol monophosphatase family CP97_09175 PF01960 ArgJ family CP97_09185 PF01043 SecA preprotein cross-linking domain CP97_09185 PF07517 SecA DEAD-like domain CP97_09185 PF02810 SEC-C motif CP97_09185 PF07516 SecA Wing and Scaffold domain CP97_09200 PF01513 ATP-NAD kinase CP97_09205 PF00990 Diguanylate cyclase, GGDEF domain CP97_09205 PF03707 Bacterial signalling protein N terminal repeat CP97_09205 PF00563 EAL domain CP97_09210 PF00271 Helicase conserved C-terminal domain CP97_09210 PF17757 UvrB interaction domain CP97_09210 PF02559 CarD-like/TRCF domain CP97_09210 PF00270 DEAD/DEAH box helicase CP97_09210 PF03461 TRCF domain CP97_09225 PF17191 RecG wedge domain CP97_09225 PF00271 Helicase conserved C-terminal domain CP97_09225 PF00270 DEAD/DEAH box helicase CP97_09235 PF02687 FtsX-like permease family CP97_09235 PF12704 MacB-like periplasmic core domain CP97_09240 PF00005 ABC transporter CP97_09255 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CP97_09255 PF02811 PHP domain CP97_09255 PF14579 Helix-hairpin-helix motif CP97_09255 PF07733 Bacterial DNA polymerase III alpha NTPase domain CP97_09275 PF00994 Probable molybdopterin binding domain CP97_09295 PF00288 GHMP kinases N terminal domain CP97_09295 PF08544 GHMP kinases C terminal CP97_09305 PF00920 Dehydratase family CP97_09315 PF01256 Carbohydrate kinase CP97_09315 PF03853 YjeF-related protein N-terminus CP97_09320 PF05958 tRNA (Uracil-5-)-methyltransferase CP97_09345 PF13193 AMP-binding enzyme C-terminal domain CP97_09345 PF00501 AMP-binding enzyme CP97_09350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CP97_09350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CP97_09375 PF01471 Putative peptidoglycan binding domain CP97_09375 PF13401 AAA domain CP97_09400 PF13537 Glutamine amidotransferase domain CP97_09400 PF00733 Asparagine synthase CP97_09405 PF03969 AFG1-like ATPase CP97_09410 PF13085 2Fe-2S iron-sulfur cluster binding domain CP97_09420 PF07478 D-ala D-ala ligase C-terminus CP97_09420 PF01820 D-ala D-ala ligase N-terminus CP97_09430 PF00483 Nucleotidyl transferase CP97_09430 PF00132 Bacterial transferase hexapeptide (six repeats) CP97_09435 PF10150 Ribonuclease E/G family CP97_09435 PF12111 Polyribonucleotide phosphorylase C terminal CP97_09435 PF00575 S1 RNA binding domain CP97_09440 PF11741 AMIN domain CP97_09440 PF01520 N-acetylmuramoyl-L-alanine amidase CP97_09445 PF17092 Penicillin-binding protein OB-like domain CP97_09445 PF00905 Penicillin binding protein transpeptidase domain CP97_09445 PF00912 Transglycosylase CP97_09450 PF00472 RF-1 domain CP97_09450 PF03462 PCRF domain CP97_09465 PF00909 Ammonium Transporter Family CP97_09480 PF02803 Thiolase, C-terminal domain CP97_09480 PF00108 Thiolase, N-terminal domain CP97_09490 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CP97_09495 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CP97_09500 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CP97_09505 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CP97_09515 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CP97_09515 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CP97_09515 PF10531 SLBB domain CP97_09520 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CP97_09520 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CP97_09520 PF00384 Molybdopterin oxidoreductase CP97_09525 PF00146 NADH dehydrogenase CP97_09530 PF12838 4Fe-4S dicluster domain CP97_09535 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CP97_09540 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CP97_09545 PF00361 Proton-conducting membrane transporter CP97_09545 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CP97_09550 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CP97_09550 PF00361 Proton-conducting membrane transporter CP97_09555 PF00361 Proton-conducting membrane transporter CP97_09560 PF03099 Biotin/lipoate A/B protein ligase family CP97_09560 PF02237 Biotin protein ligase C terminal domain CP97_09565 PF03309 Type III pantothenate kinase CP97_09570 PF17770 Ribonuclease J C-terminal domain CP97_09570 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CP97_09570 PF12706 Beta-lactamase superfamily domain CP97_09600 PF00512 His Kinase A (phospho-acceptor) domain CP97_09600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_09605 PF00285 Citrate synthase, C-terminal domain CP97_09610 PF00749 tRNA synthetases class I (E and Q), catalytic domain CP97_09615 PF03772 Competence protein CP97_09615 PF00753 Metallo-beta-lactamase superfamily CP97_09620 PF00717 Peptidase S24-like CP97_09620 PF01726 LexA DNA binding domain CP97_09625 PF00994 Probable molybdopterin binding domain CP97_09625 PF03454 MoeA C-terminal region (domain IV) CP97_09625 PF03453 MoeA N-terminal region (domain I and II) CP97_09630 PF01967 MoaC family CP97_09640 PF00218 Indole-3-glycerol phosphate synthase CP97_09645 PF02885 Glycosyl transferase family, helical bundle domain CP97_09645 PF00591 Glycosyl transferase family, a/b domain CP97_09650 PF00117 Glutamine amidotransferase class-I CP97_09660 PF00425 chorismate binding enzyme CP97_09660 PF04715 Anthranilate synthase component I, N terminal region CP97_09665 PF13145 PPIC-type PPIASE domain CP97_09670 PF00121 Triosephosphate isomerase CP97_09680 PF06418 CTP synthase N-terminus CP97_09680 PF00117 Glutamine amidotransferase class-I CP97_09685 PF00011 Hsp20/alpha crystallin family CP97_09690 PF08534 Redoxin CP97_09690 PF00462 Glutaredoxin CP97_09695 PF00795 Carbon-nitrogen hydrolase CP97_09710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CP97_09720 PF00676 Dehydrogenase E1 component CP97_09725 PF00364 Biotin-requiring enzyme CP97_09725 PF02779 Transketolase, pyrimidine binding domain CP97_09725 PF02780 Transketolase, C-terminal domain CP97_09755 PF01134 Glucose inhibited division protein A CP97_09765 PF00521 DNA gyrase/topoisomerase IV, subunit A CP97_09765 PF03989 DNA gyrase C-terminal domain, beta-propeller CP97_09780 PF01926 50S ribosome-binding GTPase CP97_09780 PF06071 Protein of unknown function (DUF933) CP97_09800 PF01195 Peptidyl-tRNA hydrolase CP97_09805 PF14693 Ribosomal protein TL5, C-terminal domain CP97_09805 PF01386 Ribosomal L25p family CP97_09835 PF02091 Glycyl-tRNA synthetase alpha subunit CP97_09840 PF02092 Glycyl-tRNA synthetase beta subunit CP97_09840 PF05746 DALR anticodon binding domain CP97_09845 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CP97_09845 PF02896 PEP-utilising enzyme, TIM barrel domain CP97_09845 PF00391 PEP-utilising enzyme, mobile domain CP97_09860 PF01502 Phosphoribosyl-AMP cyclohydrolase CP97_09865 PF00291 Pyridoxal-phosphate dependent enzyme CP97_09880 PF01479 S4 domain CP97_09880 PF00579 tRNA synthetases class I (W and Y) CP97_09890 PF07075 Protein of unknown function (DUF1343) CP97_09910 PF01751 Toprim domain CP97_09910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_09910 PF00204 DNA gyrase B CP97_09910 PF00986 DNA gyrase B subunit, carboxyl terminus CP97_09915 PF04348 LppC putative lipoprotein CP97_09920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CP97_09925 PF02021 Uncharacterised protein family UPF0102 CP97_09930 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CP97_09930 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CP97_09935 PF09335 SNARE associated Golgi protein CP97_09940 PF02899 Phage integrase, N-terminal SAM-like domain CP97_09940 PF00589 Phage integrase family CP97_09945 PF04055 Radical SAM superfamily CP97_09945 PF06969 HemN C-terminal domain CP97_09955 PF01725 Ham1 family CP97_09960 PF01138 3' exoribonuclease family, domain 1 CP97_09960 PF03725 3' exoribonuclease family, domain 2 CP97_09965 PF01628 HrcA protein C terminal domain CP97_09970 PF01025 GrpE CP97_09980 PF00583 Acetyltransferase (GNAT) family CP97_09995 PF00012 Hsp70 protein CP97_10000 PF00226 DnaJ domain CP97_10000 PF01556 DnaJ C terminal domain CP97_10000 PF00684 DnaJ central domain CP97_10005 PF11856 Protein of unknown function (DUF3376) CP97_10005 PF01734 Patatin-like phospholipase CP97_10010 PF06745 KaiC CP97_10010 PF18073 Rubredoxin metal binding domain CP97_10025 PF07690 Major Facilitator Superfamily CP97_10025 PF00083 Sugar (and other) transporter CP97_10030 PF01168 Alanine racemase, N-terminal domain CP97_10030 PF00842 Alanine racemase, C-terminal domain CP97_10035 PF07879 PHB/PHA accumulation regulator DNA-binding domain CP97_10035 PF05233 PHB accumulation regulatory domain CP97_10040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP97_10040 PF03129 Anticodon binding domain CP97_10050 PF04389 Peptidase family M28 CP97_10050 PF02225 PA domain CP97_10055 PF00773 RNB domain CP97_10055 PF00575 S1 RNA binding domain CP97_10055 PF17876 Cold shock domain CP97_10055 PF08206 Ribonuclease B OB domain CP97_10055 PF08461 Ribonuclease R winged-helix domain CP97_10070 PF00364 Biotin-requiring enzyme CP97_10070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CP97_10070 PF02817 e3 binding domain CP97_10075 PF03061 Thioesterase superfamily CP97_10080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP97_10080 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_10095 PF13406 Transglycosylase SLT domain CP97_10100 PF03330 Lytic transglycolase CP97_10100 PF05036 Sporulation related domain CP97_10105 PF00768 D-alanyl-D-alanine carboxypeptidase CP97_10105 PF07943 Penicillin-binding protein 5, C-terminal domain CP97_10110 PF02223 Thymidylate kinase CP97_10115 PF09115 DNA polymerase III, delta subunit, C terminal CP97_10120 PF09334 tRNA synthetases class I (M) CP97_10125 PF01026 TatD related DNase CP97_10135 PF03819 MazG nucleotide pyrophosphohydrolase domain CP97_10140 PF13167 GTP-binding GTPase N-terminal CP97_10140 PF16360 GTP-binding GTPase Middle Region CP97_10140 PF01926 50S ribosome-binding GTPase CP97_10145 PF17209 Hfq protein CP97_10150 PF02954 Bacterial regulatory protein, Fis family CP97_10150 PF00158 Sigma-54 interaction domain CP97_10150 PF00072 Response regulator receiver domain CP97_10155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_10155 PF00989 PAS fold CP97_10155 PF00512 His Kinase A (phospho-acceptor) domain CP97_10155 PF00672 HAMP domain CP97_10160 PF00072 Response regulator receiver domain CP97_10160 PF00158 Sigma-54 interaction domain CP97_10160 PF02954 Bacterial regulatory protein, Fis family CP97_10165 PF00512 His Kinase A (phospho-acceptor) domain CP97_10165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_10170 PF01207 Dihydrouridine synthase (Dus) CP97_10185 PF02542 YgbB family CP97_10185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CP97_10190 PF18146 Damage-inducible protein CinA KH domain CP97_10190 PF02464 Competence-damaged protein CP97_10190 PF00994 Probable molybdopterin binding domain CP97_10195 PF03364 Polyketide cyclase / dehydrase and lipid transport CP97_10200 PF04055 Radical SAM superfamily CP97_10200 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CP97_10205 PF00484 Carbonic anhydrase CP97_10230 PF08676 MutL C terminal dimerisation domain CP97_10230 PF01119 DNA mismatch repair protein, C-terminal domain CP97_10240 PF04085 rod shape-determining protein MreC CP97_10250 PF00905 Penicillin binding protein transpeptidase domain CP97_10250 PF03717 Penicillin-binding Protein dimerisation domain CP97_10255 PF01098 Cell cycle protein CP97_10265 PF06114 IrrE N-terminal-like domain CP97_10265 PF01381 Helix-turn-helix CP97_10265 PF09856 Predicted transcriptional regulator (DUF2083) CP97_10285 PF01740 STAS domain CP97_10290 PF01740 STAS domain CP97_10290 PF08678 Rsbr N terminal CP97_10300 PF01613 Flavin reductase like domain CP97_10305 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CP97_10305 PF00925 GTP cyclohydrolase II CP97_10310 PF00885 6,7-dimethyl-8-ribityllumazine synthase CP97_10320 PF03952 Enolase, N-terminal domain CP97_10320 PF00113 Enolase, C-terminal TIM barrel domain CP97_10350 PF01527 Transposase CP97_10355 PF02371 Transposase IS116/IS110/IS902 family CP97_10355 PF01548 Transposase CP97_10360 PF13683 Integrase core domain CP97_10360 PF13276 HTH-like domain CP97_10370 PF01272 Transcription elongation factor, GreA/GreB, C-term CP97_10370 PF03449 Transcription elongation factor, N-terminal CP97_10375 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CP97_10375 PF02142 MGS-like domain CP97_10375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP97_10385 PF00117 Glutamine amidotransferase class-I CP97_10385 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CP97_10400 PF10410 DnaB-helicase binding domain of primase CP97_10400 PF08278 DNA primase DnaG DnaB-binding CP97_10400 PF08275 DNA primase catalytic core, N-terminal domain CP97_10400 PF01807 CHC2 zinc finger CP97_10405 PF04539 Sigma-70 region 3 CP97_10405 PF04545 Sigma-70, region 4 CP97_10405 PF03979 Sigma-70 factor, region 1.1 CP97_10405 PF04546 Sigma-70, non-essential region CP97_10405 PF00140 Sigma-70 factor, region 1.2 CP97_10405 PF04542 Sigma-70 region 2 CP97_10410 PF00849 RNA pseudouridylate synthase CP97_10425 PF02502 Ribose/Galactose Isomerase CP97_10430 PF00464 Serine hydroxymethyltransferase CP97_10440 PF03477 ATP cone domain CP97_10445 PF00588 SpoU rRNA Methylase family CP97_10450 PF01479 S4 domain CP97_10450 PF00163 Ribosomal protein S4/S9 N-terminal domain CP97_10460 PF01702 Queuine tRNA-ribosyltransferase CP97_10470 PF01061 ABC-2 type transporter CP97_10475 PF00005 ABC transporter CP97_10480 PF02547 Queuosine biosynthesis protein CP97_10485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CP97_10490 PF01467 Cytidylyltransferase-like CP97_10495 PF00348 Polyprenyl synthetase CP97_10500 PF02609 Exonuclease VII small subunit CP97_10505 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CP97_10505 PF02769 AIR synthase related protein, C-terminal domain CP97_10505 PF00586 AIR synthase related protein, N-terminal domain CP97_10535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP97_10535 PF00205 Thiamine pyrophosphate enzyme, central domain CP97_10535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP97_10540 PF10369 Small subunit of acetolactate synthase CP97_10550 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CP97_10550 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CP97_10555 PF00682 HMGL-like CP97_10555 PF08502 LeuA allosteric (dimerisation) domain CP97_10560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_10560 PF00512 His Kinase A (phospho-acceptor) domain CP97_10560 PF09308 LuxQ, periplasmic CP97_10560 PF00072 Response regulator receiver domain CP97_10575 PF17768 RecJ OB domain CP97_10575 PF02272 DHHA1 domain CP97_10575 PF01368 DHH family CP97_10590 PF00512 His Kinase A (phospho-acceptor) domain CP97_10590 PF00989 PAS fold CP97_10590 PF16736 Single Cache-like CP97_10590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_10595 PF07396 Phosphate-selective porin O and P CP97_10605 PF00528 Binding-protein-dependent transport system inner membrane component CP97_10610 PF00528 Binding-protein-dependent transport system inner membrane component CP97_10615 PF00005 ABC transporter CP97_10620 PF01895 PhoU domain CP97_10625 PF00072 Response regulator receiver domain CP97_10625 PF00486 Transcriptional regulatory protein, C terminal CP97_10635 PF07733 Bacterial DNA polymerase III alpha NTPase domain CP97_10635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CP97_10635 PF14579 Helix-hairpin-helix motif CP97_10635 PF02811 PHP domain CP97_10635 PF01336 OB-fold nucleic acid binding domain CP97_10650 PF03471 Transporter associated domain CP97_10650 PF03741 Integral membrane protein TerC family CP97_10665 PF01593 Flavin containing amine oxidoreductase CP97_10670 PF04239 Protein of unknown function (DUF421) CP97_10675 PF12848 ABC transporter CP97_10675 PF00005 ABC transporter CP97_10680 PF17151 Periplasmic sensor domain CP97_10680 PF00990 Diguanylate cyclase, GGDEF domain CP97_10705 PF01921 tRNA synthetases class I (K) CP97_10710 PF05552 Conserved TM helix CP97_10710 PF00924 Mechanosensitive ion channel CP97_10720 PF06733 DEAD_2 CP97_10720 PF13307 Helicase C-terminal domain CP97_10735 PF00216 Bacterial DNA-binding protein CP97_10740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CP97_10740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CP97_10745 PF02504 Fatty acid synthesis protein CP97_10760 PF00753 Metallo-beta-lactamase superfamily CP97_10780 PF01406 tRNA synthetases class I (C) catalytic domain CP97_10790 PF11775 Cobalamin biosynthesis protein CobT VWA domain CP97_10790 PF06213 Cobalamin biosynthesis protein CobT CP97_10800 PF18074 Primosomal protein N C-terminal domain CP97_10800 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CP97_10800 PF00270 DEAD/DEAH box helicase CP97_10800 PF17764 3′ DNA-binding domain (3′BD) CP97_10810 PF02219 Methylenetetrahydrofolate reductase CP97_10815 PF02310 B12 binding domain CP97_10815 PF02607 B12 binding domain CP97_10815 PF02965 Vitamin B12 dependent methionine synthase, activation domain CP97_10815 PF00809 Pterin binding enzyme CP97_10815 PF02574 Homocysteine S-methyltransferase CP97_10820 PF02965 Vitamin B12 dependent methionine synthase, activation domain CP97_10820 PF00809 Pterin binding enzyme CP97_10820 PF02574 Homocysteine S-methyltransferase CP97_10820 PF02310 B12 binding domain CP97_10820 PF02607 B12 binding domain CP97_10830 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CP97_10830 PF12833 Helix-turn-helix domain CP97_10830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CP97_10830 PF02805 Metal binding domain of Ada CP97_10835 PF02674 Colicin V production protein CP97_10840 PF00213 ATP synthase delta (OSCP) subunit CP97_10845 PF00306 ATP synthase alpha/beta chain, C terminal domain CP97_10845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP97_10845 PF02874 ATP synthase alpha/beta family, beta-barrel domain CP97_10850 PF00231 ATP synthase CP97_10860 PF02874 ATP synthase alpha/beta family, beta-barrel domain CP97_10860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP97_10865 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CP97_10885 PF00535 Glycosyl transferase family 2 CP97_10895 PF00398 Ribosomal RNA adenine dimethylase CP97_10910 PF00437 Type II/IV secretion system protein CP97_10950 PF13286 Phosphohydrolase-associated domain CP97_10950 PF01966 HD domain CP97_10960 PF04151 Bacterial pre-peptidase C-terminal domain CP97_10960 PF05922 Peptidase inhibitor I9 CP97_10960 PF00082 Subtilase family CP97_10965 PF02233 NAD(P) transhydrogenase beta subunit CP97_10970 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CP97_10975 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CP97_10975 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CP97_10980 PF00158 Sigma-54 interaction domain CP97_10980 PF02954 Bacterial regulatory protein, Fis family CP97_10980 PF00072 Response regulator receiver domain CP97_10985 PF00809 Pterin binding enzyme CP97_10990 PF01555 DNA methylase CP97_10990 PF18755 Restriction Enzyme Adenine Methylase Associated CP97_10995 PF01351 Ribonuclease HII CP97_11000 PF07995 Glucose / Sorbosone dehydrogenase CP97_11015 PF00293 NUDIX domain CP97_11020 PF01743 Poly A polymerase head domain CP97_11020 PF12627 Probable RNA and SrmB- binding site of polymerase A CP97_11020 PF12626 Polymerase A arginine-rich C-terminus CP97_11030 PF00521 DNA gyrase/topoisomerase IV, subunit A CP97_11030 PF03989 DNA gyrase C-terminal domain, beta-propeller CP97_11035 PF01965 DJ-1/PfpI family CP97_11045 PF08446 PAS fold CP97_11045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_11045 PF00360 Phytochrome region CP97_11045 PF01590 GAF domain CP97_11045 PF00512 His Kinase A (phospho-acceptor) domain CP97_11050 PF12697 Alpha/beta hydrolase family CP97_11055 PF00111 2Fe-2S iron-sulfur cluster binding domain CP97_11060 PF00266 Aminotransferase class-V CP97_11065 PF00266 Aminotransferase class-V CP97_11095 PF01293 Phosphoenolpyruvate carboxykinase CP97_11100 PF00486 Transcriptional regulatory protein, C terminal CP97_11100 PF00072 Response regulator receiver domain CP97_11105 PF00512 His Kinase A (phospho-acceptor) domain CP97_11105 PF13755 Sensor N-terminal transmembrane domain CP97_11105 PF13756 Stimulus-sensing domain CP97_11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_11105 PF00672 HAMP domain CP97_11115 PF03668 P-loop ATPase protein family CP97_11120 PF03830 PTS system sorbose subfamily IIB component CP97_11120 PF03610 PTS system fructose IIA component CP97_11125 PF00381 PTS HPr component phosphorylation site CP97_11130 PF08032 RNA 2'-O ribose methyltransferase substrate binding CP97_11130 PF00588 SpoU rRNA Methylase family CP97_11140 PF02646 RmuC family CP97_11160 PF01327 Polypeptide deformylase CP97_11165 PF02132 RecR protein CP97_11165 PF13662 Toprim domain CP97_11170 PF00551 Formyl transferase CP97_11170 PF02911 Formyl transferase, C-terminal domain CP97_11175 PF01416 tRNA pseudouridine synthase CP97_11195 PF12556 Cobaltochelatase CobS subunit N terminal CP97_11195 PF08406 CbbQ/NirQ/NorQ C-terminal CP97_11195 PF07728 AAA domain (dynein-related subfamily) CP97_11210 PF00226 DnaJ domain CP97_11235 PF01634 ATP phosphoribosyltransferase CP97_11240 PF00815 Histidinol dehydrogenase CP97_11245 PF01029 NusB family CP97_11250 PF02769 AIR synthase related protein, C-terminal domain CP97_11250 PF00586 AIR synthase related protein, N-terminal domain CP97_11255 PF03030 Inorganic H+ pyrophosphatase CP97_11275 PF00144 Beta-lactamase CP97_11285 PF02151 UvrB/uvrC motif CP97_11285 PF08459 UvrC Helix-hairpin-helix N-terminal CP97_11285 PF01541 GIY-YIG catalytic domain CP97_11290 PF13520 Amino acid permease CP97_11305 PF01176 Translation initiation factor 1A / IF-1 CP97_11310 PF02545 Maf-like protein CP97_11330 PF00999 Sodium/hydrogen exchanger family CP97_11335 PF01259 SAICAR synthetase CP97_11350 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CP97_11360 PF00563 EAL domain CP97_11360 PF08448 PAS fold CP97_11360 PF00990 Diguanylate cyclase, GGDEF domain CP97_11360 PF08447 PAS fold CP97_11365 PF01380 SIS domain CP97_11375 PF14602 Hexapeptide repeat of succinyl-transferase CP97_11375 PF00132 Bacterial transferase hexapeptide (six repeats) CP97_11375 PF12804 MobA-like NTP transferase domain CP97_11380 PF13419 Haloacid dehalogenase-like hydrolase CP97_11390 PF00132 Bacterial transferase hexapeptide (six repeats) CP97_11405 PF02769 AIR synthase related protein, C-terminal domain CP97_11405 PF00586 AIR synthase related protein, N-terminal domain CP97_11410 PF00551 Formyl transferase CP97_11420 PF00334 Nucleoside diphosphate kinase CP97_11435 PF02789 Cytosol aminopeptidase family, N-terminal domain CP97_11435 PF00883 Cytosol aminopeptidase family, catalytic domain CP97_11440 PF04453 LPS transport system D CP97_11440 PF03968 OstA-like protein CP97_11445 PF00639 PPIC-type PPIASE domain CP97_11445 PF09312 SurA N-terminal domain CP97_11450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CP97_11455 PF00398 Ribosomal RNA adenine dimethylase CP97_11460 PF01546 Peptidase family M20/M25/M40 CP97_11460 PF07687 Peptidase dimerisation domain CP97_11465 PF04958 Arginine N-succinyltransferase beta subunit CP97_11470 PF04996 Succinylarginine dihydrolase CP97_11480 PF01741 Large-conductance mechanosensitive channel, MscL CP97_11485 PF01741 Large-conductance mechanosensitive channel, MscL CP97_11510 PF00485 Phosphoribulokinase / Uridine kinase family CP97_11515 PF00196 Bacterial regulatory proteins, luxR family CP97_11515 PF13426 PAS domain CP97_11520 PF14685 Tricorn protease PDZ domain CP97_11520 PF03572 Peptidase family S41 CP97_11520 PF07676 WD40-like Beta Propeller Repeat CP97_11520 PF14684 Tricorn protease C1 domain CP97_11525 PF03328 HpcH/HpaI aldolase/citrate lyase family CP97_11530 PF01575 MaoC like domain CP97_11535 PF00106 short chain dehydrogenase CP97_11560 PF01527 Transposase CP97_11565 PF13276 HTH-like domain CP97_11565 PF13683 Integrase core domain CP97_11620 PF01061 ABC-2 type transporter CP97_11645 PF01138 3' exoribonuclease family, domain 1 CP97_11645 PF00013 KH domain CP97_11645 PF03725 3' exoribonuclease family, domain 2 CP97_11645 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CP97_11645 PF00575 S1 RNA binding domain CP97_11650 PF00312 Ribosomal protein S15 CP97_11655 PF16198 tRNA pseudouridylate synthase B C-terminal domain CP97_11655 PF01509 TruB family pseudouridylate synthase (N terminal domain) CP97_11660 PF02163 Peptidase family M50 CP97_11665 PF03806 AbgT putative transporter family CP97_11680 PF00265 Thymidine kinase CP97_11685 PF02033 Ribosome-binding factor A CP97_11695 PF00009 Elongation factor Tu GTP binding domain CP97_11695 PF08364 Bacterial translation initiation factor IF-2 associated region CP97_11695 PF04760 Translation initiation factor IF-2, N-terminal region CP97_11695 PF11987 Translation-initiation factor 2 CP97_11705 PF13184 NusA-like KH domain CP97_11705 PF08529 NusA N-terminal domain CP97_11705 PF00575 S1 RNA binding domain CP97_11710 PF02576 RimP N-terminal domain CP97_11710 PF17384 RimP C-terminal SH3 domain CP97_11720 PF00158 Sigma-54 interaction domain CP97_11720 PF02954 Bacterial regulatory protein, Fis family CP97_11730 PF04012 PspA/IM30 family CP97_11775 PF02657 Fe-S metabolism associated domain CP97_11780 PF01679 Proteolipid membrane potential modulator CP97_11790 PF04116 Fatty acid hydroxylase superfamily CP97_11805 PF00330 Aconitase family (aconitate hydratase) CP97_11820 PF00694 Aconitase C-terminal domain CP97_11835 PF00462 Glutaredoxin CP97_11850 PF00171 Aldehyde dehydrogenase family CP97_11860 PF13181 Tetratricopeptide repeat CP97_11870 PF00593 TonB dependent receptor CP97_11870 PF07715 TonB-dependent Receptor Plug Domain CP97_11885 PF02463 RecF/RecN/SMC N terminal domain CP97_11895 PF13472 GDSL-like Lipase/Acylhydrolase family CP97_11900 PF00005 ABC transporter CP97_11910 PF05656 Protein of unknown function (DUF805) CP97_11915 PF06271 RDD family CP97_11920 PF07715 TonB-dependent Receptor Plug Domain CP97_11920 PF00593 TonB dependent receptor CP97_11925 PF00679 Elongation factor G C-terminus CP97_11925 PF03144 Elongation factor Tu domain 2 CP97_11925 PF00009 Elongation factor Tu GTP binding domain CP97_11930 PF13477 Glycosyl transferase 4-like CP97_11930 PF00534 Glycosyl transferases group 1 CP97_11940 PF03551 Transcriptional regulator PadR-like family CP97_11945 PF12002 MgsA AAA+ ATPase C terminal CP97_11945 PF16193 AAA C-terminal domain CP97_11945 PF00004 ATPase family associated with various cellular activities (AAA) CP97_11960 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CP97_11960 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CP97_11960 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CP97_11965 PF14489 QueF-like protein CP97_11975 PF00581 Rhodanese-like domain CP97_11980 PF01053 Cys/Met metabolism PLP-dependent enzyme CP97_11985 PF05552 Conserved TM helix CP97_11985 PF00924 Mechanosensitive ion channel CP97_11990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CP97_11990 PF10414 Sirohaem synthase dimerisation region CP97_11990 PF14824 Sirohaem biosynthesis protein central CP97_12000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CP97_12000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CP97_12010 PF01507 Phosphoadenosine phosphosulfate reductase family CP97_12030 PF00696 Amino acid kinase family CP97_12030 PF01472 PUA domain CP97_12035 PF01926 50S ribosome-binding GTPase CP97_12035 PF01018 GTP1/OBG CP97_12050 PF01027 Inhibitor of apoptosis-promoting Bax1 CP97_12055 PF03807 NADP oxidoreductase coenzyme F420-dependent CP97_12055 PF14748 Pyrroline-5-carboxylate reductase dimerisation CP97_12070 PF12327 FtsZ family, C-terminal domain CP97_12070 PF00091 Tubulin/FtsZ family, GTPase domain CP97_12075 PF02491 SHS2 domain inserted in FTSA CP97_12080 PF03799 Cell division protein FtsQ CP97_12080 PF08478 POTRA domain, FtsQ-type CP97_12085 PF01820 D-ala D-ala ligase N-terminus CP97_12085 PF07478 D-ala D-ala ligase C-terminus CP97_12090 PF01565 FAD binding domain CP97_12090 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CP97_12095 PF02875 Mur ligase family, glutamate ligase domain CP97_12095 PF01225 Mur ligase family, catalytic domain CP97_12095 PF08245 Mur ligase middle domain CP97_12100 PF04101 Glycosyltransferase family 28 C-terminal domain CP97_12100 PF03033 Glycosyltransferase family 28 N-terminal domain CP97_12105 PF01098 Cell cycle protein CP97_12110 PF08245 Mur ligase middle domain CP97_12110 PF02875 Mur ligase family, glutamate ligase domain CP97_12115 PF00953 Glycosyl transferase family 4 CP97_12115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CP97_12120 PF08245 Mur ligase middle domain CP97_12120 PF02875 Mur ligase family, glutamate ligase domain CP97_12120 PF01225 Mur ligase family, catalytic domain CP97_12125 PF08245 Mur ligase middle domain CP97_12125 PF02875 Mur ligase family, glutamate ligase domain CP97_12125 PF01225 Mur ligase family, catalytic domain CP97_12130 PF03717 Penicillin-binding Protein dimerisation domain CP97_12130 PF00905 Penicillin binding protein transpeptidase domain CP97_12140 PF01795 MraW methylase family CP97_12160 PF00291 Pyridoxal-phosphate dependent enzyme CP97_12165 PF00111 2Fe-2S iron-sulfur cluster binding domain CP97_12175 PF00326 Prolyl oligopeptidase family CP97_12180 PF01329 Pterin 4 alpha carbinolamine dehydratase CP97_12185 PF00005 ABC transporter CP97_12190 PF03379 CcmB protein CP97_12200 PF00557 Metallopeptidase family M24 CP97_12210 PF00883 Cytosol aminopeptidase family, catalytic domain CP97_12210 PF02789 Cytosol aminopeptidase family, N-terminal domain CP97_12220 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP97_12225 PF00543 Nitrogen regulatory protein P-II CP97_12230 PF03951 Glutamine synthetase, beta-Grasp domain CP97_12230 PF00120 Glutamine synthetase, catalytic domain CP97_12255 PF17243 POTRA domain TamA domain 1 CP97_12255 PF07244 Surface antigen variable number repeat CP97_12255 PF01103 Surface antigen CP97_12260 PF04376 Arginine-tRNA-protein transferase, N terminus CP97_12260 PF04377 Arginine-tRNA-protein transferase, C terminus CP97_12265 PF13291 ACT domain CP97_12265 PF00291 Pyridoxal-phosphate dependent enzyme CP97_12270 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CP97_12270 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CP97_12275 PF07969 Amidohydrolase family CP97_12280 PF00902 Sec-independent protein translocase protein (TatC) CP97_12285 PF02416 mttA/Hcf106 family CP97_12295 PF04079 Segregation and condensation complex subunit ScpB CP97_12300 PF02616 Segregation and condensation protein ScpA CP97_12305 PF00933 Glycosyl hydrolase family 3 N terminal domain CP97_12315 PF05746 DALR anticodon binding domain CP97_12315 PF00133 tRNA synthetases class I (I, L, M and V) CP97_12315 PF03485 Arginyl tRNA synthetase N terminal domain CP97_12315 PF00750 tRNA synthetases class I (R) CP97_12325 PF02401 LytB protein CP97_12330 PF01636 Phosphotransferase enzyme family CP97_12335 PF00075 RNase H CP97_12340 PF01266 FAD dependent oxidoreductase CP97_12360 PF04972 BON domain CP97_12360 PF00263 Bacterial type II and III secretion system protein CP97_12360 PF13629 Pilus formation protein N terminal region CP97_12390 PF01048 Phosphorylase superfamily CP97_12400 PF07724 AAA domain (Cdc48 subfamily) CP97_12400 PF10431 C-terminal, D2-small domain, of ClpB protein CP97_12400 PF02861 Clp amino terminal domain, pathogenicity island component CP97_12400 PF17871 AAA lid domain CP97_12400 PF00004 ATPase family associated with various cellular activities (AAA) CP97_12410 PF03109 ABC1 family CP97_12415 PF00588 SpoU rRNA Methylase family CP97_12420 PF02637 GatB domain CP97_12420 PF02934 GatB/GatE catalytic domain CP97_12425 PF01425 Amidase CP97_12430 PF02686 Glu-tRNAGln amidotransferase C subunit CP97_12440 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CP97_12440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CP97_12445 PF01165 Ribosomal protein S21 CP97_12450 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CP97_12455 PF01479 S4 domain CP97_12455 PF00849 RNA pseudouridylate synthase CP97_12485 PF00005 ABC transporter CP97_12490 PF02405 Permease MlaE CP97_12495 PF08264 Anticodon-binding domain of tRNA CP97_12495 PF00133 tRNA synthetases class I (I, L, M and V) CP97_12495 PF10458 Valyl tRNA synthetase tRNA binding arm CP97_12515 PF01925 Sulfite exporter TauE/SafE CP97_12530 PF06965 Na+/H+ antiporter 1 CP97_12550 PF05698 Bacterial trigger factor protein (TF) C-terminus CP97_12550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CP97_12550 PF05697 Bacterial trigger factor protein (TF) CP97_12565 PF00574 Clp protease CP97_12570 PF07724 AAA domain (Cdc48 subfamily) CP97_12570 PF10431 C-terminal, D2-small domain, of ClpB protein CP97_12570 PF06689 ClpX C4-type zinc finger CP97_12585 PF01545 Cation efflux family CP97_12590 PF00912 Transglycosylase CP97_12595 PF04545 Sigma-70, region 4 CP97_12595 PF00140 Sigma-70 factor, region 1.2 CP97_12595 PF04542 Sigma-70 region 2 CP97_12600 PF00849 RNA pseudouridylate synthase CP97_12610 PF10090 Histidine phosphotransferase C-terminal domain CP97_12615 PF01510 N-acetylmuramoyl-L-alanine amidase CP97_12620 PF00149 Calcineurin-like phosphoesterase CP97_12630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CP97_12635 PF01926 50S ribosome-binding GTPase CP97_12635 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CP97_12640 PF07715 TonB-dependent Receptor Plug Domain CP97_12640 PF00593 TonB dependent receptor CP97_12660 PF01575 MaoC like domain CP97_12665 PF00583 Acetyltransferase (GNAT) family CP97_12665 PF13380 CoA binding domain CP97_12665 PF13607 Succinyl-CoA ligase like flavodoxin domain CP97_12670 PF02803 Thiolase, C-terminal domain CP97_12670 PF00108 Thiolase, N-terminal domain CP97_12685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP97_12685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP97_12685 PF02770 Acyl-CoA dehydrogenase, middle domain CP97_12695 PF00106 short chain dehydrogenase CP97_12700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP97_12700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP97_12700 PF02770 Acyl-CoA dehydrogenase, middle domain CP97_12705 PF02515 CoA-transferase family III CP97_12730 PF13291 ACT domain CP97_12730 PF04607 Region found in RelA / SpoT proteins CP97_12730 PF02824 TGS domain CP97_12735 PF01433 Peptidase family M1 domain CP97_12745 PF01218 Coproporphyrinogen III oxidase CP97_12755 PF05198 Translation initiation factor IF-3, N-terminal domain CP97_12755 PF00707 Translation initiation factor IF-3, C-terminal domain CP97_12760 PF00294 pfkB family carbohydrate kinase CP97_12770 PF00939 Sodium:sulfate symporter transmembrane region CP97_12775 PF01053 Cys/Met metabolism PLP-dependent enzyme CP97_12790 PF00684 DnaJ central domain CP97_12790 PF01556 DnaJ C terminal domain CP97_12790 PF00226 DnaJ domain CP97_12795 PF00691 OmpA family CP97_12800 PF07676 WD40-like Beta Propeller Repeat CP97_12800 PF04052 TolB amino-terminal domain CP97_12810 PF02472 Biopolymer transport protein ExbD/TolR CP97_12815 PF01618 MotA/TolQ/ExbB proton channel family CP97_12820 PF03061 Thioesterase superfamily CP97_12825 PF01230 HIT domain CP97_12830 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CP97_12840 PF00977 Histidine biosynthesis protein CP97_12845 PF00977 Histidine biosynthesis protein CP97_12850 PF00117 Glutamine amidotransferase class-I CP97_12855 PF00475 Imidazoleglycerol-phosphate dehydratase CP97_12870 PF00625 Guanylate kinase CP97_12875 PF14602 Hexapeptide repeat of succinyl-transferase CP97_12875 PF00132 Bacterial transferase hexapeptide (six repeats) CP97_12875 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CP97_12895 PF01244 Membrane dipeptidase (Peptidase family M19) CP97_12945 PF00313 'Cold-shock' DNA-binding domain CP97_12950 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CP97_12980 PF02469 Fasciclin domain CP97_12990 PF13667 ThiC-associated domain CP97_12990 PF01964 Radical SAM ThiC family CP97_13005 PF07676 WD40-like Beta Propeller Repeat CP97_13005 PF00326 Prolyl oligopeptidase family CP97_13025 PF01593 Flavin containing amine oxidoreductase CP97_13030 PF03641 Possible lysine decarboxylase CP97_13040 PF00364 Biotin-requiring enzyme CP97_13040 PF00289 Biotin carboxylase, N-terminal domain CP97_13040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP97_13040 PF18140 Propionyl-coenzyme A carboxylase BT domain CP97_13040 PF02785 Biotin carboxylase C-terminal domain CP97_13045 PF01266 FAD dependent oxidoreductase CP97_13045 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CP97_13055 PF11798 IMS family HHH motif CP97_13055 PF11799 impB/mucB/samB family C-terminal domain CP97_13055 PF00817 impB/mucB/samB family CP97_13060 PF00293 NUDIX domain CP97_13065 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CP97_13070 PF00210 Ferritin-like domain CP97_13080 PF01068 ATP dependent DNA ligase domain CP97_13080 PF04679 ATP dependent DNA ligase C terminal region CP97_13080 PF13298 DNA polymerase Ligase (LigD) CP97_13085 PF02735 Ku70/Ku80 beta-barrel domain CP97_13090 PF06628 Catalase-related immune-responsive CP97_13090 PF00199 Catalase CP97_13090 PF18011 C-terminal domain found in long catalases CP97_13110 PF01527 Transposase CP97_13115 PF13276 HTH-like domain CP97_13115 PF13683 Integrase core domain CP97_13170 PF00589 Phage integrase family CP97_13170 PF13356 Arm DNA-binding domain CP97_13195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP97_13195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP97_13195 PF02770 Acyl-CoA dehydrogenase, middle domain CP97_13200 PF00378 Enoyl-CoA hydratase/isomerase CP97_13205 PF01451 Low molecular weight phosphotyrosine protein phosphatase CP97_13215 PF00271 Helicase conserved C-terminal domain CP97_13215 PF00270 DEAD/DEAH box helicase CP97_13225 PF12848 ABC transporter CP97_13225 PF00005 ABC transporter CP97_13235 PF00403 Heavy-metal-associated domain CP97_13240 PF05751 FixH CP97_13245 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CP97_13245 PF12801 4Fe-4S binding domain CP97_13245 PF13746 4Fe-4S dicluster domain CP97_13250 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CP97_13250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CP97_13260 PF00115 Cytochrome C and Quinol oxidase polypeptide I CP97_13270 PF00027 Cyclic nucleotide-binding domain CP97_13270 PF13545 Crp-like helix-turn-helix domain CP97_13285 PF00012 Hsp70 protein CP97_13335 PF00005 ABC transporter CP97_13335 PF00664 ABC transporter transmembrane region CP97_13340 PF01740 STAS domain CP97_13340 PF00916 Sulfate permease family CP97_13345 PF01914 MarC family integral membrane protein CP97_13350 PF00004 ATPase family associated with various cellular activities (AAA) CP97_13350 PF07724 AAA domain (Cdc48 subfamily) CP97_13360 PF00227 Proteasome subunit CP97_13380 PF00436 Single-strand binding protein family CP97_13385 PF07670 Nucleoside recognition CP97_13385 PF02421 Ferrous iron transport protein B CP97_13385 PF17910 FeoB cytosolic helical domain CP97_13385 PF04023 FeoA domain CP97_13385 PF07664 Ferrous iron transport protein B C terminus CP97_13405 PF02630 SCO1/SenC CP97_13410 PF03692 Putative zinc- or iron-chelating domain CP97_13425 PF01872 RibD C-terminal domain CP97_13425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CP97_13430 PF00677 Lumazine binding domain CP97_13445 PF00155 Aminotransferase class I and II CP97_13460 PF00589 Phage integrase family CP97_13460 PF13356 Arm DNA-binding domain CP97_13475 PF01527 Transposase CP97_13480 PF13683 Integrase core domain CP97_13480 PF13276 HTH-like domain CP97_13485 PF00924 Mechanosensitive ion channel CP97_13490 PF08751 TrwC relaxase CP97_13490 PF18340 DNA relaxase TraI 2B/2B-like domain CP97_13490 PF07057 DNA helicase TraI CP97_13490 PF18272 single-stranded DNA binding TraI N-terminal subdomain CP97_13520 PF00271 Helicase conserved C-terminal domain CP97_13520 PF12137 RNA polymerase recycling family C-terminal CP97_13520 PF18337 RapA N-terminal Tudor like domain CP97_13520 PF18339 RapA N-terminal Tudor like domain 1 CP97_13520 PF00176 SNF2 family N-terminal domain CP97_13525 PF07804 HipA-like C-terminal domain CP97_13525 PF13657 HipA N-terminal domain CP97_13530 PF01381 Helix-turn-helix CP97_13540 PF03922 OmpW family CP97_13545 PF04055 Radical SAM superfamily CP97_13560 PF00593 TonB dependent receptor CP97_13560 PF07715 TonB-dependent Receptor Plug Domain CP97_13565 PF00501 AMP-binding enzyme CP97_13565 PF13193 AMP-binding enzyme C-terminal domain CP97_13585 PF00355 Rieske [2Fe-2S] domain CP97_13585 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP97_13590 PF17932 Tetracyclin repressor-like, C-terminal domain CP97_13590 PF00440 Bacterial regulatory proteins, tetR family CP97_13605 PF01569 PAP2 superfamily CP97_13610 PF08669 Glycine cleavage T-protein C-terminal barrel domain CP97_13610 PF01571 Aminomethyltransferase folate-binding domain CP97_13615 PF01597 Glycine cleavage H-protein CP97_13620 PF02347 Glycine cleavage system P-protein CP97_13625 PF00266 Aminotransferase class-V CP97_13630 PF00072 Response regulator receiver domain CP97_13650 PF01464 Transglycosylase SLT domain CP97_13650 PF01551 Peptidase family M23 CP97_13650 PF10145 Phage-related minor tail protein CP97_13665 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CP97_13680 PF03743 Bacterial conjugation TrbI-like protein CP97_13685 PF00437 Type II/IV secretion system protein CP97_13690 PF17941 Polyphosphate kinase C-terminal domain 1 CP97_13690 PF13090 Polyphosphate kinase C-terminal domain 2 CP97_13690 PF02503 Polyphosphate kinase middle domain CP97_13690 PF13089 Polyphosphate kinase N-terminal domain CP97_13695 PF02541 Ppx/GppA phosphatase family CP97_13730 PF02464 Competence-damaged protein CP97_13730 PF00994 Probable molybdopterin binding domain CP97_13735 PF00687 Ribosomal protein L1p/L10e family CP97_13740 PF00298 Ribosomal protein L11, RNA binding domain CP97_13740 PF03946 Ribosomal protein L11, N-terminal domain CP97_13750 PF00467 KOW motif CP97_13750 PF02357 Transcription termination factor nusG CP97_13760 PF01235 Sodium:alanine symporter family CP97_13775 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CP97_13800 PF00501 AMP-binding enzyme CP97_13835 PF00483 Nucleotidyl transferase CP97_13835 PF01050 Mannose-6-phosphate isomerase CP97_13845 PF05378 Hydantoinase/oxoprolinase N-terminal region CP97_13845 PF01968 Hydantoinase/oxoprolinase CP97_13860 PF10417 C-terminal domain of 1-Cys peroxiredoxin CP97_13860 PF00578 AhpC/TSA family CP97_13865 PF00753 Metallo-beta-lactamase superfamily CP97_13870 PF04143 Sulphur transport CP97_13885 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_13885 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CP97_13885 PF10518 TAT (twin-arginine translocation) pathway signal sequence CP97_13890 PF00916 Sulfate permease family CP97_13890 PF01740 STAS domain CP97_13895 PF01654 Cytochrome bd terminal oxidase subunit I CP97_13900 PF02322 Cytochrome bd terminal oxidase subunit II CP97_13905 PF00378 Enoyl-CoA hydratase/isomerase CP97_13920 PF18140 Propionyl-coenzyme A carboxylase BT domain CP97_13920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP97_13920 PF00364 Biotin-requiring enzyme CP97_13920 PF00289 Biotin carboxylase, N-terminal domain CP97_13920 PF02785 Biotin carboxylase C-terminal domain CP97_13925 PF02310 B12 binding domain CP97_13925 PF01642 Methylmalonyl-CoA mutase CP97_13940 PF01039 Carboxyl transferase domain CP97_13955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CP97_13960 PF01568 Molydopterin dinucleotide binding domain CP97_13960 PF00384 Molybdopterin oxidoreductase CP97_13960 PF04324 BFD-like [2Fe-2S] binding domain CP97_13960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP97_13965 PF00355 Rieske [2Fe-2S] domain CP97_13970 PF04324 BFD-like [2Fe-2S] binding domain CP97_13970 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CP97_13970 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_13970 PF18267 Rubredoxin NAD+ reductase C-terminal domain CP97_13970 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CP97_13980 PF00005 ABC transporter CP97_13985 PF00528 Binding-protein-dependent transport system inner membrane component CP97_13990 PF00005 ABC transporter CP97_14000 PF00486 Transcriptional regulatory protein, C terminal CP97_14000 PF00072 Response regulator receiver domain CP97_14005 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP97_14005 PF00355 Rieske [2Fe-2S] domain CP97_14010 PF00866 Ring hydroxylating beta subunit CP97_14015 PF00107 Zinc-binding dehydrogenase CP97_14015 PF08240 Alcohol dehydrogenase GroES-like domain CP97_14020 PF00701 Dihydrodipicolinate synthetase family CP97_14030 PF00180 Isocitrate/isopropylmalate dehydrogenase CP97_14040 PF02558 Ketopantoate reductase PanE/ApbA CP97_14040 PF08546 Ketopantoate reductase PanE/ApbA C terminal CP97_14045 PF00296 Luciferase-like monooxygenase CP97_14060 PF07690 Major Facilitator Superfamily CP97_14065 PF03328 HpcH/HpaI aldolase/citrate lyase family CP97_14070 PF01557 Fumarylacetoacetate (FAA) hydrolase family CP97_14075 PF00561 alpha/beta hydrolase fold CP97_14085 PF07690 Major Facilitator Superfamily CP97_14095 PF02913 FAD linked oxidases, C-terminal domain CP97_14095 PF01565 FAD binding domain CP97_14105 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CP97_14110 PF00171 Aldehyde dehydrogenase family CP97_14115 PF02913 FAD linked oxidases, C-terminal domain CP97_14115 PF01565 FAD binding domain CP97_14125 PF02441 Flavoprotein CP97_14130 PF00171 Aldehyde dehydrogenase family CP97_14135 PF00593 TonB dependent receptor CP97_14135 PF07715 TonB-dependent Receptor Plug Domain CP97_14145 PF01323 DSBA-like thioredoxin domain CP97_14150 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP97_14150 PF00355 Rieske [2Fe-2S] domain CP97_14165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CP97_14170 PF00355 Rieske [2Fe-2S] domain CP97_14170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP97_14180 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CP97_14185 PF00355 Rieske [2Fe-2S] domain CP97_14185 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP97_14190 PF00866 Ring hydroxylating beta subunit CP97_14195 PF02798 Glutathione S-transferase, N-terminal domain CP97_14195 PF00043 Glutathione S-transferase, C-terminal domain CP97_14200 PF00561 alpha/beta hydrolase fold CP97_14205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CP97_14210 PF03928 Haem-degrading CP97_14215 PF00171 Aldehyde dehydrogenase family CP97_14220 PF01557 Fumarylacetoacetate (FAA) hydrolase family CP97_14225 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CP97_14225 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP97_14230 PF00682 HMGL-like CP97_14230 PF07836 DmpG-like communication domain CP97_14235 PF01557 Fumarylacetoacetate (FAA) hydrolase family CP97_14240 PF01361 Tautomerase enzyme CP97_14245 PF00171 Aldehyde dehydrogenase family CP97_14250 PF00106 short chain dehydrogenase CP97_14255 PF14759 Reductase C-terminal CP97_14255 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_14260 PF00106 short chain dehydrogenase CP97_14265 PF00701 Dihydrodipicolinate synthetase family CP97_14270 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP97_14270 PF00355 Rieske [2Fe-2S] domain CP97_14280 PF13683 Integrase core domain CP97_14280 PF13276 HTH-like domain CP97_14285 PF01527 Transposase CP97_14290 PF01037 Lrp/AsnC ligand binding domain CP97_14295 PF07715 TonB-dependent Receptor Plug Domain CP97_14295 PF00593 TonB dependent receptor CP97_14310 PF00529 HlyD membrane-fusion protein of T1SS CP97_14310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP97_14330 PF00155 Aminotransferase class I and II CP97_14335 PF01925 Sulfite exporter TauE/SafE CP97_14370 PF00005 ABC transporter CP97_14375 PF13533 Biotin-lipoyl like CP97_14380 PF02321 Outer membrane efflux protein CP97_14385 PF01594 AI-2E family transporter CP97_14390 PF00107 Zinc-binding dehydrogenase CP97_14390 PF08240 Alcohol dehydrogenase GroES-like domain CP97_14395 PF00294 pfkB family carbohydrate kinase CP97_14400 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CP97_14400 PF00391 PEP-utilising enzyme, mobile domain CP97_14400 PF02896 PEP-utilising enzyme, TIM barrel domain CP97_14405 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CP97_14405 PF10091 Putative glucoamylase CP97_14405 PF06165 Glycosyltransferase family 36 CP97_14430 PF01699 Sodium/calcium exchanger protein CP97_14445 PF00689 Cation transporting ATPase, C-terminus CP97_14445 PF00690 Cation transporter/ATPase, N-terminus CP97_14455 PF00005 ABC transporter CP97_14470 PF00512 His Kinase A (phospho-acceptor) domain CP97_14470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_14470 PF00989 PAS fold CP97_14475 PF00196 Bacterial regulatory proteins, luxR family CP97_14475 PF00072 Response regulator receiver domain CP97_14505 PF00924 Mechanosensitive ion channel CP97_14510 PF13091 PLD-like domain CP97_14515 PF02405 Permease MlaE CP97_14520 PF00005 ABC transporter CP97_14535 PF16859 Tetracyclin repressor-like, C-terminal domain CP97_14535 PF00440 Bacterial regulatory proteins, tetR family CP97_14545 PF01758 Sodium Bile acid symporter family CP97_14580 PF00355 Rieske [2Fe-2S] domain CP97_14580 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP97_14585 PF00866 Ring hydroxylating beta subunit CP97_14595 PF13193 AMP-binding enzyme C-terminal domain CP97_14595 PF00501 AMP-binding enzyme CP97_14605 PF00378 Enoyl-CoA hydratase/isomerase CP97_14620 PF07715 TonB-dependent Receptor Plug Domain CP97_14620 PF00593 TonB dependent receptor CP97_14621 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP97_14621 PF03466 LysR substrate binding domain CP97_14626 PF00440 Bacterial regulatory proteins, tetR family CP97_14626 PF08361 MAATS-type transcriptional repressor, C-terminal region CP97_14628 PF00501 AMP-binding enzyme CP97_14628 PF13193 AMP-binding enzyme C-terminal domain CP97_14641 PF00664 ABC transporter transmembrane region CP97_14641 PF00005 ABC transporter CP97_14642 PF00005 ABC transporter CP97_14644 PF13439 Glycosyltransferase Family 4 CP97_14648 PF00781 Diacylglycerol kinase catalytic domain CP97_14650 PF00468 Ribosomal protein L34 CP97_14656 PF13181 Tetratricopeptide repeat CP97_14676 PF01527 Transposase CP97_14677 PF00582 Universal stress protein family CP97_14678 PF08281 Sigma-70, region 4 CP97_14678 PF04542 Sigma-70 region 2 CP97_14682 PF00561 alpha/beta hydrolase fold CP97_14683 PF02652 L-lactate permease CP97_14684 PF03717 Penicillin-binding Protein dimerisation domain CP97_14684 PF00905 Penicillin binding protein transpeptidase domain CP97_14695 PF02719 Polysaccharide biosynthesis protein CP97_14697 PF02706 Chain length determinant protein CP97_14697 PF13614 AAA domain CP97_14697 PF13807 G-rich domain on putative tyrosine kinase CP97_14699 PF08548 Peptidase M10 serralysin C terminal CP97_14699 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CP97_14699 PF00413 Matrixin CP97_14700 PF00486 Transcriptional regulatory protein, C terminal CP97_14700 PF00072 Response regulator receiver domain CP97_14701 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_14701 PF00989 PAS fold CP97_14701 PF00512 His Kinase A (phospho-acceptor) domain CP97_14706 PF00196 Bacterial regulatory proteins, luxR family CP97_14706 PF00072 Response regulator receiver domain CP97_14708 PF00072 Response regulator receiver domain CP97_14708 PF00990 Diguanylate cyclase, GGDEF domain CP97_14709 PF00196 Bacterial regulatory proteins, luxR family CP97_14742 PF01066 CDP-alcohol phosphatidyltransferase CP97_14745 PF13188 PAS domain CP97_14745 PF00563 EAL domain CP97_14745 PF00990 Diguanylate cyclase, GGDEF domain CP97_14745 PF03707 Bacterial signalling protein N terminal repeat CP97_14771 PF00512 His Kinase A (phospho-acceptor) domain CP97_14771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_14771 PF00672 HAMP domain CP97_14785 PF17092 Penicillin-binding protein OB-like domain CP97_14785 PF00912 Transglycosylase CP97_14785 PF00905 Penicillin binding protein transpeptidase domain CP97_14786 PF04389 Peptidase family M28 CP97_14786 PF02225 PA domain CP97_14789 PF05193 Peptidase M16 inactive domain CP97_14789 PF00675 Insulinase (Peptidase family M16) CP97_14799 PF00684 DnaJ central domain CP97_14799 PF01556 DnaJ C terminal domain CP97_14799 PF00226 DnaJ domain CP97_14806 PF02416 mttA/Hcf106 family CP97_14807 PF07411 Domain of unknown function (DUF1508) CP97_14817 PF10755 Protein of unknown function (DUF2585) CP97_14818 PF10755 Protein of unknown function (DUF2585) CP97_14824 PF00027 Cyclic nucleotide-binding domain CP97_14824 PF13545 Crp-like helix-turn-helix domain CP97_14837 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CP97_14837 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CP97_14838 PF00743 Flavin-binding monooxygenase-like CP97_14849 PF01614 Bacterial transcriptional regulator CP97_14849 PF09339 IclR helix-turn-helix domain CP97_14855 PF00583 Acetyltransferase (GNAT) family CP97_14855 PF13380 CoA binding domain CP97_14855 PF13607 Succinyl-CoA ligase like flavodoxin domain CP97_14862 PF02515 CoA-transferase family III CP97_14863 PF13683 Integrase core domain CP97_14867 PF13614 AAA domain CP97_14874 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_14875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP97_14876 PF00873 AcrB/AcrD/AcrF family CP97_14877 PF02321 Outer membrane efflux protein CP97_14880 PF13091 PLD-like domain CP97_14881 PF00924 Mechanosensitive ion channel CP97_14884 PF00512 His Kinase A (phospho-acceptor) domain CP97_14884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP97_14884 PF00672 HAMP domain CP97_14888 PF01047 MarR family CP97_14889 PF02566 OsmC-like protein CP97_14891 PF00589 Phage integrase family CP97_14891 PF02899 Phage integrase, N-terminal SAM-like domain CP97_14896 PF13276 HTH-like domain CP97_14896 PF13683 Integrase core domain CP97_14897 PF01527 Transposase CP97_14898 PF04546 Sigma-70, non-essential region CP97_14898 PF00140 Sigma-70 factor, region 1.2 CP97_14898 PF04542 Sigma-70 region 2 CP97_14898 PF04545 Sigma-70, region 4 CP97_14898 PF04539 Sigma-70 region 3 CP97_14898 PF03979 Sigma-70 factor, region 1.1 CP97_14903 PF01555 DNA methylase CP97_14904 PF00436 Single-strand binding protein family CP97_14907 PF07995 Glucose / Sorbosone dehydrogenase CP97_14911 PF01699 Sodium/calcium exchanger protein CP97_14913 PF00115 Cytochrome C and Quinol oxidase polypeptide I CP97_14914 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CP97_14914 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CP97_14923 PF00206 Lyase CP97_14923 PF10415 Fumarase C C-terminus CP97_14924 PF01566 Natural resistance-associated macrophage protein CP97_14924 PF03358 NADPH-dependent FMN reductase CP97_14925 PF02735 Ku70/Ku80 beta-barrel domain CP97_14927 PF02308 MgtC family CP97_14928 PF13298 DNA polymerase Ligase (LigD) CP97_14928 PF01068 ATP dependent DNA ligase domain CP97_14928 PF04679 ATP dependent DNA ligase C terminal region CP97_14934 PF04986 Putative transposase CP97_14934 PF14319 Transposase zinc-binding domain CP97_14944 PF00436 Single-strand binding protein family CP97_14949 PF01464 Transglycosylase SLT domain CP97_14949 PF01551 Peptidase family M23 CP97_14949 PF10145 Phage-related minor tail protein CP97_14965 PF06834 TraU protein CP97_14970 PF06122 Conjugative relaxosome accessory transposon protein CP97_14982 PF00892 EamA-like transporter family CP97_14990 PF13411 MerR HTH family regulatory protein CP97_14991 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP97_14991 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP97_14993 PF00753 Metallo-beta-lactamase superfamily CP97_14994 PF04143 Sulphur transport CP97_14996 PF00916 Sulfate permease family CP97_14996 PF01740 STAS domain CP97_14997 PF00753 Metallo-beta-lactamase superfamily CP97_15013 PF13801 Heavy-metal resistance CP97_15014 PF08281 Sigma-70, region 4 CP97_15014 PF04542 Sigma-70 region 2 CP97_15015 PF07731 Multicopper oxidase CP97_15015 PF00394 Multicopper oxidase CP97_15015 PF07732 Multicopper oxidase CP97_15016 PF05275 Copper resistance protein B precursor (CopB) CP97_15019 PF13360 PQQ-like domain CP97_15020 PF04945 YHS domain CP97_15021 PF07731 Multicopper oxidase CP97_15021 PF10518 TAT (twin-arginine translocation) pathway signal sequence CP97_15021 PF07732 Multicopper oxidase CP97_15021 PF00394 Multicopper oxidase CP97_15024 PF00873 AcrB/AcrD/AcrF family CP97_15025 PF00529 HlyD membrane-fusion protein of T1SS CP97_15025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP97_15028 PF00571 CBS domain CP97_15028 PF00478 IMP dehydrogenase / GMP reductase domain CP97_15033 PF09278 MerR, DNA binding CP97_15033 PF00376 MerR family regulatory protein CP97_15034 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CP97_15035 PF00593 TonB dependent receptor CP97_15035 PF07660 Secretin and TonB N terminus short domain CP97_15035 PF07715 TonB-dependent Receptor Plug Domain CP97_15037 PF01545 Cation efflux family CP97_15043 PF00873 AcrB/AcrD/AcrF family CP97_15044 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP97_15045 PF02321 Outer membrane efflux protein CP97_15047 PF09278 MerR, DNA binding CP97_15047 PF00376 MerR family regulatory protein CP97_15049 PF03239 Iron permease FTR1 family CP97_15050 PF00394 Multicopper oxidase CP97_15050 PF07731 Multicopper oxidase CP97_15050 PF07732 Multicopper oxidase CP97_15051 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP97_15051 PF00205 Thiamine pyrophosphate enzyme, central domain CP97_15051 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP97_15052 PF00171 Aldehyde dehydrogenase family CP97_15053 PF01252 Signal peptidase (SPase) II CP97_15054 PF10417 C-terminal domain of 1-Cys peroxiredoxin CP97_15054 PF00578 AhpC/TSA family CP97_15056 PF00067 Cytochrome P450 CP97_15061 PF18272 single-stranded DNA binding TraI N-terminal subdomain CP97_15061 PF07057 DNA helicase TraI CP97_15061 PF18340 DNA relaxase TraI 2B/2B-like domain CP97_15061 PF08751 TrwC relaxase CP97_15063 PF12615 F sex factor protein N terminal CP97_15063 PF10412 Type IV secretion-system coupling protein DNA-binding domain CP97_15095 PF02195 ParB-like nuclease domain CP97_15095 PF17762 HTH domain found in ParB protein