AURUGA1_00001	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00001	SM00760	Bacterial dnaA protein helix-turn-helix domain
AURUGA1_00002	SM00480	DNA polymerase III beta subunit
AURUGA1_00005	SM00387	Histidine kinase-like ATPases
AURUGA1_00005	SM00433	TopoisomeraseII
AURUGA1_00006	SM00434	DNA Topoisomerase IV
AURUGA1_00011	SM00464	Found in ATP-dependent protease La (LON)
AURUGA1_00019	SM00220	Serine/Threonine protein kinases, catalytic domain
AURUGA1_00019	SM00740	AURUGA1_00019
AURUGA1_00020	SM00220	Serine/Threonine protein kinases, catalytic domain
AURUGA1_00023	SM00331	Sigma factor PP2C-like phosphatases
AURUGA1_00023	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AURUGA1_00024	SM00240	Forkhead associated domain
AURUGA1_00025	SM00240	Forkhead associated domain
AURUGA1_00041	SM00450	Rhodanese Homology Domain
AURUGA1_00043	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00050	SM00411	bacterial (prokaryotic) histone like domain
AURUGA1_00053	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00060	SM00861	Transketolase, pyrimidine binding domain
AURUGA1_00064	SM00344	helix_turn_helix ASNC type
AURUGA1_00083	SM00487	DEAD-like helicases superfamily
AURUGA1_00083	SM00490	helicase superfamily c-terminal domain
AURUGA1_00093	SM01018	B12 binding domain
AURUGA1_00096	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00103	SM01004	Delta-aminolevulinic acid dehydratase
AURUGA1_00118	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00121	SM00905	Dihydroneopterin aldolase
AURUGA1_00128	SM00155	Phospholipase D. Active site motifs.
AURUGA1_00133	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00133	SM01086	C-terminal, D2-small domain, of ClpB protein
AURUGA1_00139	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00142	SM00421	helix_turn_helix, Lux Regulon
AURUGA1_00142	SM00448	cheY-homologous receiver domain
AURUGA1_00154	SM00731	SprT homologues.
AURUGA1_00157	SM00663	RNA polymerase I subunit A N-terminus
AURUGA1_00161	SM00838	Elongation factor G C-terminus
AURUGA1_00161	SM00889	Elongation factor G, domain IV
AURUGA1_00165	SM01403	AURUGA1_00165
AURUGA1_00169	SM01382	AURUGA1_00169
AURUGA1_00169	SM01383	AURUGA1_00169
AURUGA1_00172	SM00322	K homology RNA-binding domain
AURUGA1_00176	SM01374	AURUGA1_00176
AURUGA1_00189	SM00316	Ribosomal protein S1-like RNA-binding domain
AURUGA1_00192	SM00662	RNA polymerases D
AURUGA1_00201	SM01005	Alanine racemase, C-terminal domain
AURUGA1_00209	SM00883	Chaperonin 10 Kd subunit
AURUGA1_00214	SM00530	Helix-turn-helix XRE-family like proteins 
AURUGA1_00221	SM01240	AURUGA1_00221
AURUGA1_00222	SM00116	Domain in cystathionine beta-synthase and other proteins.
AURUGA1_00222	SM01240	AURUGA1_00222
AURUGA1_00225	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00226	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00254	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00255	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00258	SM00829	Enoylreductase
AURUGA1_00262	SM00900	AURUGA1_00262
AURUGA1_00265	SM00867	YceI-like domain 
AURUGA1_00278	SM00855	Phosphoglycerate mutase family
AURUGA1_00280	SM00862	Transcriptional regulatory protein, C terminal
AURUGA1_00284	SM00855	Phosphoglycerate mutase family
AURUGA1_00287	SM01058	CarD-like/TRCF domain
AURUGA1_00289	SM00840	AURUGA1_00289
AURUGA1_00290	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AURUGA1_00295	SM00357	Cold shock protein domain
AURUGA1_00299	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AURUGA1_00299	SM00387	Histidine kinase-like ATPases
AURUGA1_00299	SM00388	His Kinase A (phosphoacceptor) domain
AURUGA1_00300	SM00448	cheY-homologous receiver domain
AURUGA1_00300	SM00862	Transcriptional regulatory protein, C terminal
AURUGA1_00301	SM00487	DEAD-like helicases superfamily
AURUGA1_00301	SM00490	helicase superfamily c-terminal domain
AURUGA1_00304	SM00357	Cold shock protein domain
AURUGA1_00307	SM00529	Helix-turn-helix diphteria tox regulatory element
AURUGA1_00309	SM00507	HNH nucleases
AURUGA1_00329	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00329	SM00487	DEAD-like helicases superfamily
AURUGA1_00329	SM00490	helicase superfamily c-terminal domain
AURUGA1_00329	SM00847	Helicase associated domain (HA2)  Add an annotation
AURUGA1_00337	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00340	SM00650	Ribosomal RNA adenine dimethylases
AURUGA1_00342	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00343	SM00347	helix_turn_helix multiple antibiotic resistance protein
AURUGA1_00346	SM01400	AURUGA1_00346
AURUGA1_00351	SM01350	AURUGA1_00351
AURUGA1_00355	SM00487	DEAD-like helicases superfamily
AURUGA1_00355	SM00490	helicase superfamily c-terminal domain
AURUGA1_00355	SM00982	AURUGA1_00355
AURUGA1_00355	SM01058	CarD-like/TRCF domain
AURUGA1_00357	SM00530	Helix-turn-helix XRE-family like proteins 
AURUGA1_00362	SM01192	AURUGA1_00362
AURUGA1_00362	SM01193	AURUGA1_00362
AURUGA1_00369	SM00530	Helix-turn-helix XRE-family like proteins 
AURUGA1_00384	SM00642	Alpha-amylase domain
AURUGA1_00395	SM00670	Large family of predicted nucleotide-binding domains
AURUGA1_00401	SM00346	helix_turn_helix isocitrate lyase regulation
AURUGA1_00406	SM00822	AURUGA1_00406
AURUGA1_00413	SM00346	helix_turn_helix isocitrate lyase regulation
AURUGA1_00414	SM00346	helix_turn_helix isocitrate lyase regulation
AURUGA1_00425	SM00947	Carbonic anhydrase
AURUGA1_00428	SM00829	Enoylreductase
AURUGA1_00446	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00449	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AURUGA1_00449	SM00866	AURUGA1_00449
AURUGA1_00474	SM01021	Bacteriorhodopsin-like protein
AURUGA1_00482	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00483	SM00838	Elongation factor G C-terminus
AURUGA1_00489	SM00829	Enoylreductase
AURUGA1_00499	SM00344	helix_turn_helix ASNC type
AURUGA1_00503	SM00116	Domain in cystathionine beta-synthase and other proteins.
AURUGA1_00503	SM00924	MgtE intracellular N domain
AURUGA1_00507	SM01011	Aminopeptidase P, N-terminal domain
AURUGA1_00508	SM00481	DNA polymerase alpha chain like domain
AURUGA1_00512	SM00487	DEAD-like helicases superfamily
AURUGA1_00512	SM00490	helicase superfamily c-terminal domain
AURUGA1_00517	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00524	SM00822	AURUGA1_00524
AURUGA1_00532	SM00316	Ribosomal protein S1-like RNA-binding domain
AURUGA1_00537	SM00478	endonuclease III
AURUGA1_00537	SM00525	AURUGA1_00537
AURUGA1_00542	SM00904	Riboflavin kinase
AURUGA1_00550	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AURUGA1_00550	SM00895	AURUGA1_00550
AURUGA1_00554	SM01230	AURUGA1_00554
AURUGA1_00558	SM01152	AURUGA1_00558
AURUGA1_00561	SM01387	AURUGA1_00561
AURUGA1_00562	SM00316	Ribosomal protein S1-like RNA-binding domain
AURUGA1_00562	SM00322	K homology RNA-binding domain
AURUGA1_00565	SM00855	Phosphoglycerate mutase family
AURUGA1_00583	SM00642	Alpha-amylase domain
AURUGA1_00584	SM00642	Alpha-amylase domain
AURUGA1_00585	SM00642	Alpha-amylase domain
AURUGA1_00588	SM00292	breast cancer carboxy-terminal domain
AURUGA1_00588	SM00532	Ligase N family
AURUGA1_00593	SM00845	GatB domain
AURUGA1_00597	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00603	SM00479	AURUGA1_00603
AURUGA1_00610	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00619	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AURUGA1_00619	SM01232	AURUGA1_00619
AURUGA1_00631	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00631	SM00994	ClpX C4-type zinc finger
AURUGA1_00631	SM01086	C-terminal, D2-small domain, of ClpB protein
AURUGA1_00647	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AURUGA1_00649	SM00873	B3/4 domain
AURUGA1_00649	SM00874	tRNA synthetase B5 domain
AURUGA1_00649	SM00896	Ferredoxin-fold anticodon binding domain
AURUGA1_00651	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AURUGA1_00670	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AURUGA1_00670	SM00895	AURUGA1_00670
AURUGA1_00675	SM00363	S4 RNA-binding domain
AURUGA1_00684	SM00363	S4 RNA-binding domain
AURUGA1_00698	SM00947	Carbonic anhydrase
AURUGA1_00703	SM00354	helix_turn _helix lactose operon repressor
AURUGA1_00704	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AURUGA1_00707	SM00487	DEAD-like helicases superfamily
AURUGA1_00707	SM00490	helicase superfamily c-terminal domain
AURUGA1_00708	SM00240	Forkhead associated domain
AURUGA1_00709	SM00422	helix_turn_helix, mercury resistance
AURUGA1_00710	SM00422	helix_turn_helix, mercury resistance
AURUGA1_00712	SM00878	Biotin carboxylase C-terminal domain
AURUGA1_00718	SM00563	Phosphate acyltransferases
AURUGA1_00731	SM00562	AURUGA1_00731
AURUGA1_00733	SM00756	AURUGA1_00733
AURUGA1_00753	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00755	SM00450	Rhodanese Homology Domain
AURUGA1_00759	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AURUGA1_00760	SM00849	Metallo-beta-lactamase superfamily
AURUGA1_00763	SM00838	Elongation factor G C-terminus
AURUGA1_00765	SM00729	Elongator protein 3, MiaB family, Radical SAM
AURUGA1_00767	SM00271	DnaJ molecular chaperone homology domain
AURUGA1_00772	SM00116	Domain in cystathionine beta-synthase and other proteins.
AURUGA1_00772	SM01091	Transporter associated domain
AURUGA1_00774	SM00917	LeuA allosteric (dimerisation) domain
AURUGA1_00777	SM00822	AURUGA1_00777
AURUGA1_00781	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00783	SM00479	AURUGA1_00783
AURUGA1_00788	SM00487	DEAD-like helicases superfamily
AURUGA1_00800	SM00487	DEAD-like helicases superfamily
AURUGA1_00800	SM00490	helicase superfamily c-terminal domain
AURUGA1_00800	SM01142	AURUGA1_00800
AURUGA1_00802	SM00481	DNA polymerase alpha chain like domain
AURUGA1_00824	SM00465	GIY-YIG type nucleases (URI domain)
AURUGA1_00826	SM00487	DEAD-like helicases superfamily
AURUGA1_00826	SM00490	helicase superfamily c-terminal domain
AURUGA1_00828	SM00316	Ribosomal protein S1-like RNA-binding domain
AURUGA1_00829	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AURUGA1_00829	SM00475	5'-3' exonuclease
AURUGA1_00829	SM00482	DNA polymerase A domain
AURUGA1_00831	SM00448	cheY-homologous receiver domain
AURUGA1_00831	SM01012	AURUGA1_00831
AURUGA1_00853	SM01409	AURUGA1_00853
AURUGA1_00854	SM00072	Guanylate kinase homologues.
AURUGA1_00855	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AURUGA1_00856	SM00851	MGS-like domain
AURUGA1_00856	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AURUGA1_00857	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AURUGA1_00863	SM00841	Elongation factor P, C-terminal
AURUGA1_00863	SM01185	AURUGA1_00863
AURUGA1_00870	SM00732	Likely ribonuclease with RNase H fold.
AURUGA1_00871	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AURUGA1_00873	SM00363	S4 RNA-binding domain
AURUGA1_00873	SM01390	AURUGA1_00873
AURUGA1_00874	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00878	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AURUGA1_00878	SM00954	Region found in RelA / SpoT proteins
AURUGA1_00881	SM01323	AURUGA1_00881
AURUGA1_00882	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00883	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AURUGA1_00889	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AURUGA1_00896	SM00450	Rhodanese Homology Domain
AURUGA1_00900	SM00341	Helicase and RNase D C-terminal
AURUGA1_00900	SM00474	3'-5' exonuclease
AURUGA1_00903	SM00861	Transketolase, pyrimidine binding domain
AURUGA1_00912	SM00434	DNA Topoisomerase IV
AURUGA1_00913	SM00387	Histidine kinase-like ATPases
AURUGA1_00913	SM00433	TopoisomeraseII
AURUGA1_00922	SM00729	Elongator protein 3, MiaB family, Radical SAM
AURUGA1_00925	SM01230	AURUGA1_00925
AURUGA1_00927	SM01230	AURUGA1_00927
AURUGA1_00941	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AURUGA1_00944	SM00825	Beta-ketoacyl synthase
AURUGA1_00949	SM00421	helix_turn_helix, Lux Regulon
AURUGA1_00949	SM00448	cheY-homologous receiver domain
AURUGA1_00960	SM00400	zinc finger
AURUGA1_00960	SM00493	AURUGA1_00960
AURUGA1_00961	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AURUGA1_00969	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00973	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_00980	SM00861	Transketolase, pyrimidine binding domain
AURUGA1_00990	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AURUGA1_00994	SM00363	S4 RNA-binding domain
AURUGA1_01000	SM00864	Tubulin/FtsZ family, GTPase domain
AURUGA1_01000	SM00865	Tubulin/FtsZ family, C-terminal domain
AURUGA1_01015	SM00257	Lysin motif
AURUGA1_01016	SM00220	Serine/Threonine protein kinases, catalytic domain
AURUGA1_01016	SM00740	AURUGA1_01016
AURUGA1_01029	SM00729	Elongator protein 3, MiaB family, Radical SAM
AURUGA1_01032	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01034	SM00530	Helix-turn-helix XRE-family like proteins 
AURUGA1_01037	SM00843	AURUGA1_01037
AURUGA1_01038	SM00642	Alpha-amylase domain
AURUGA1_01039	SM00640	Glycosyl hydrolases family 32
AURUGA1_01043	SM00354	helix_turn _helix lactose operon repressor
AURUGA1_01044	SM00849	Metallo-beta-lactamase superfamily
AURUGA1_01045	SM01130	AURUGA1_01045
AURUGA1_01064	SM00881	CoA binding domain
AURUGA1_01070	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01071	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01071	SM00962	SRP54-type protein, GTPase domain
AURUGA1_01071	SM00963	SRP54-type protein, helical bundle domain
AURUGA1_01072	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01072	SM00962	SRP54-type protein, GTPase domain
AURUGA1_01072	SM00963	SRP54-type protein, helical bundle domain
AURUGA1_01074	SM00487	DEAD-like helicases superfamily
AURUGA1_01074	SM00490	helicase superfamily c-terminal domain
AURUGA1_01080	SM00563	Phosphate acyltransferases
AURUGA1_01086	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AURUGA1_01091	SM01329	AURUGA1_01091
AURUGA1_01101	SM00937	AURUGA1_01101
AURUGA1_01116	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AURUGA1_01123	SM00487	DEAD-like helicases superfamily
AURUGA1_01123	SM00490	helicase superfamily c-terminal domain
AURUGA1_01129	SM00894	Excalibur calcium-binding domain
AURUGA1_01132	SM00346	helix_turn_helix isocitrate lyase regulation
AURUGA1_01138	SM00849	Metallo-beta-lactamase superfamily
AURUGA1_01138	SM01027	Beta-Casp domain
AURUGA1_01142	SM00903	Flavin reductase like domain
AURUGA1_01153	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01159	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AURUGA1_01159	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AURUGA1_01164	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01165	SM00060	Fibronectin type 3 domain
AURUGA1_01166	SM00220	Serine/Threonine protein kinases, catalytic domain
AURUGA1_01167	SM00331	Sigma factor PP2C-like phosphatases
AURUGA1_01167	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AURUGA1_01169	SM00968	SMC proteins Flexible Hinge Domain
AURUGA1_01170	SM00346	helix_turn_helix isocitrate lyase regulation
AURUGA1_01171	SM01119	AURUGA1_01171
AURUGA1_01172	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AURUGA1_01172	SM01232	AURUGA1_01172
AURUGA1_01173	SM00358	Double-stranded RNA binding motif
AURUGA1_01173	SM00535	Ribonuclease III family
AURUGA1_01189	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01206	SM00937	AURUGA1_01206
AURUGA1_01207	SM00357	Cold shock protein domain
AURUGA1_01207	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01214	SM00984	UDP binding domain
AURUGA1_01232	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01236	SM00836	DALR anticodon binding domain
AURUGA1_01236	SM01016	Arginyl tRNA synthetase N terminal dom
AURUGA1_01237	SM00984	UDP binding domain
AURUGA1_01240	SM00861	Transketolase, pyrimidine binding domain
AURUGA1_01247	SM00530	Helix-turn-helix XRE-family like proteins 
AURUGA1_01252	SM00986	Uracil DNA glycosylase superfamily
AURUGA1_01252	SM00987	UreE urease accessory protein, C-terminal domain 
AURUGA1_01262	SM00116	Domain in cystathionine beta-synthase and other proteins.
AURUGA1_01263	SM01091	Transporter associated domain
AURUGA1_01264	SM00387	Histidine kinase-like ATPases
AURUGA1_01264	SM00911	HWE histidine kinase
AURUGA1_01268	SM00858	AURUGA1_01268
AURUGA1_01273	SM00957	SecA DEAD-like domain
AURUGA1_01273	SM00958	SecA preprotein cross-linking domain
AURUGA1_01276	SM00909	Sporulation and spore germination
AURUGA1_01277	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AURUGA1_01277	SM00387	Histidine kinase-like ATPases
AURUGA1_01277	SM00388	His Kinase A (phosphoacceptor) domain
AURUGA1_01278	SM00448	cheY-homologous receiver domain
AURUGA1_01278	SM00862	Transcriptional regulatory protein, C terminal
AURUGA1_01279	SM00996	S-adenosyl-L-homocysteine hydrolase
AURUGA1_01279	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
AURUGA1_01289	SM01001	AIR carboxylase
AURUGA1_01300	SM00878	Biotin carboxylase C-terminal domain
AURUGA1_01310	SM00420	helix_turn_helix, Deoxyribose operon repressor
AURUGA1_01310	SM01134	AURUGA1_01310
AURUGA1_01324	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01335	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AURUGA1_01335	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AURUGA1_01335	SM00493	AURUGA1_01335
AURUGA1_01344	SM00740	AURUGA1_01344
AURUGA1_01346	SM00984	UDP binding domain
AURUGA1_01352	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AURUGA1_01354	SM00493	AURUGA1_01354
AURUGA1_01355	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01366	SM01133	AURUGA1_01366
AURUGA1_01369	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AURUGA1_01373	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01381	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01388	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AURUGA1_01388	SM00387	Histidine kinase-like ATPases
AURUGA1_01388	SM00388	His Kinase A (phosphoacceptor) domain
AURUGA1_01389	SM00448	cheY-homologous receiver domain
AURUGA1_01389	SM00862	Transcriptional regulatory protein, C terminal
AURUGA1_01394	SM00649	Ribosomal protein L11/L12
AURUGA1_01395	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AURUGA1_01395	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AURUGA1_01406	SM00829	Enoylreductase
AURUGA1_01413	SM00347	helix_turn_helix multiple antibiotic resistance protein
AURUGA1_01416	SM01230	AURUGA1_01416
AURUGA1_01421	SM01230	AURUGA1_01421
AURUGA1_01425	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AURUGA1_01425	SM00895	AURUGA1_01425
AURUGA1_01426	SM00893	Electron transfer flavoprotein domain
AURUGA1_01427	SM00893	Electron transfer flavoprotein domain
AURUGA1_01434	SM00798	AICARFT/IMPCHase bienzyme
AURUGA1_01434	SM00851	MGS-like domain
AURUGA1_01438	SM00881	CoA binding domain
AURUGA1_01451	SM00642	Alpha-amylase domain
AURUGA1_01458	SM00347	helix_turn_helix multiple antibiotic resistance protein
AURUGA1_01466	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01471	SM00387	Histidine kinase-like ATPases
AURUGA1_01471	SM00388	His Kinase A (phosphoacceptor) domain
AURUGA1_01472	SM00448	cheY-homologous receiver domain
AURUGA1_01472	SM00862	Transcriptional regulatory protein, C terminal
AURUGA1_01473	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AURUGA1_01475	SM00226	Low molecular weight phosphatase family
AURUGA1_01477	SM01209	AURUGA1_01477
AURUGA1_01477	SM01210	AURUGA1_01477
AURUGA1_01488	SM00823	Phosphopantetheine attachment site
AURUGA1_01491	SM00642	Alpha-amylase domain
AURUGA1_01496	SM01211	AURUGA1_01496
AURUGA1_01502	SM00830	Chorismate mutase type II
AURUGA1_01506	SM00788	Adenylosuccinate synthetase
AURUGA1_01531	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AURUGA1_01536	SM00855	Phosphoglycerate mutase family
AURUGA1_01540	SM00886	Stress responsive A/B Barrel Domain
AURUGA1_01542	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AURUGA1_01548	SM00862	Transcriptional regulatory protein, C terminal
AURUGA1_01550	SM00450	Rhodanese Homology Domain
AURUGA1_01551	SM00460	Transglutaminase/protease-like homologues
AURUGA1_01574	SM00822	AURUGA1_01574
AURUGA1_01575	SM00382	ATPases associated with a variety of cellular activities
AURUGA1_01575	SM01086	C-terminal, D2-small domain, of ClpB protein
AURUGA1_01580	SM00422	helix_turn_helix, mercury resistance
AURUGA1_01581	SM00271	DnaJ molecular chaperone homology domain
AURUGA1_01593	SM00421	helix_turn_helix, Lux Regulon
AURUGA1_01603	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AURUGA1_01610	SM00470	ParB-like nuclease domain
AURUGA1_01613	SM00393	Putative single-stranded nucleic acids-binding domain
AURUGA1_01615	SM01234	AURUGA1_01615
