locus-tag	class	description
LUX29_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LUX29_00045	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LUX29_00055	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LUX29_00060	COG1250	3-hydroxyacyl-CoA dehydrogenase
LUX29_00065	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
LUX29_00070	COG2086	electron transfer activity
LUX29_00075	COG2096	Adenosyltransferase
LUX29_00095	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LUX29_00115	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LUX29_00120	COG4251	negative regulation of phosphorylation
LUX29_00140	COG0596	Alpha beta hydrolase
LUX29_00145	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LUX29_00150	COG1674	ftsk spoiiie
LUX29_00160	COG0004	ammonium transporteR
LUX29_00165	COG0347	Belongs to the P(II) protein family
LUX29_00170	COG0004	ammonium transporteR
LUX29_00175	COG0347	Belongs to the P(II) protein family
LUX29_00180	COG1946	Acyl-CoA thioesterase
LUX29_00185	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LUX29_00195	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LUX29_00205	COG0175	sulfate reduction
LUX29_00210	COG0175	sulfate reduction
LUX29_00215	COG2895	sulfate adenylyltransferase (ATP) activity
LUX29_00220	COG2835	tetraacyldisaccharide 4'-kinase activity
LUX29_00225	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LUX29_00250	COG2080	2 iron, 2 sulfur cluster binding
LUX29_00255	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
LUX29_00260	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LUX29_00280	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
LUX29_00285	COG0583	DNA-binding transcription factor activity
LUX29_00290	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_00315	COG3846	protein secretion by the type IV secretion system
LUX29_00330	COG3451	type IV secretory pathway VirB4
LUX29_00345	COG4962	Type ii secretion system protein e
LUX29_00350	COG0667	Aldo Keto reductase
LUX29_00360	COG0596	Alpha beta hydrolase
LUX29_00365	COG4974	Belongs to the 'phage' integrase family
LUX29_00380	COG1280	lysine exporter protein (LysE YggA)
LUX29_00385	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LUX29_00410	COG4221	oxidoreductase activity
LUX29_00430	COG5001	Diguanylate cyclase
LUX29_00440	COG4221	oxidoreductase activity
LUX29_00480	COG0384	phenazine biosynthesis protein PhzF
LUX29_00485	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LUX29_00495	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LUX29_00530	COG0667	Aldo Keto reductase
LUX29_00535	COG0500	methyltransferase
LUX29_00550	COG2207	Transcriptional regulator
LUX29_00590	COG2814	Major facilitator Superfamily
LUX29_00595	COG0583	DNA-binding transcription factor activity
LUX29_00620	COG4221	oxidoreductase activity
LUX29_00625	COG2207	Transcriptional regulator
LUX29_00630	COG0656	L-ascorbic acid biosynthetic process
LUX29_00635	COG0583	DNA-binding transcription factor activity
LUX29_00650	COG1073	alpha beta
LUX29_00660	COG0583	DNA-binding transcription factor activity
LUX29_00685	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_00700	COG0583	DNA-binding transcription factor activity
LUX29_00705	COG1309	transcriptional regulator
LUX29_00710	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_00715	COG2442	InterPro IPR007367
LUX29_00730	COG0583	DNA-binding transcription factor activity
LUX29_00735	COG2814	Major facilitator Superfamily
LUX29_00740	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_00745	COG2084	Dehydrogenase
LUX29_00750	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LUX29_00760	COG0702	epimerase
LUX29_00765	COG1733	regulation of RNA biosynthetic process
LUX29_00775	COG2207	Transcriptional regulator
LUX29_00780	COG0667	Aldo Keto reductase
LUX29_00790	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
LUX29_00795	COG2080	2 iron, 2 sulfur cluster binding
LUX29_00805	COG0702	epimerase
LUX29_00820	COG1376	ErfK ybiS ycfS ynhG family protein
LUX29_00835	COG0656	L-ascorbic acid biosynthetic process
LUX29_00845	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
LUX29_00865	COG1250	3-hydroxyacyl-CoA dehydrogenase
LUX29_00875	COG0129	dihydroxy-acid dehydratase activity
LUX29_00880	COG0583	DNA-binding transcription factor activity
LUX29_00905	COG3842	ATPase activity
LUX29_00910	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LUX29_00925	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LUX29_00930	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LUX29_00940	COG1376	ErfK ybiS ycfS ynhG family protein
LUX29_00940	COG1388	LysM domain
LUX29_00955	COG1733	regulation of RNA biosynthetic process
LUX29_00975	COG4608	Belongs to the ABC transporter superfamily
LUX29_00985	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_00990	COG0601	transmembrane transport
LUX29_01000	COG3534	alpha-L-arabinofuranosidase
LUX29_01010	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_01015	COG1116	anion transmembrane transporter activity
LUX29_01025	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LUX29_01035	COG2855	membrane
LUX29_01040	COG0028	Belongs to the TPP enzyme family
LUX29_01045	COG0477	Major facilitator Superfamily
LUX29_01055	COG1414	Transcriptional regulator
LUX29_01060	COG2855	membrane
LUX29_01065	COG0028	Belongs to the TPP enzyme family
LUX29_01070	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_01110	COG5001	Diguanylate cyclase
LUX29_01110	COG3300	MHYT domain
LUX29_01145	COG2207	Transcriptional regulator
LUX29_01145	COG1917	Cupin 2, conserved barrel domain protein
LUX29_01175	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LUX29_01175	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LUX29_01180	COG0753	catalase activity
LUX29_01190	COG2202	Pas domain
LUX29_01190	COG3920	Histidine kinase
LUX29_01200	COG0523	cobalamin synthesis protein
LUX29_01210	COG1609	Transcriptional regulator
LUX29_01215	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LUX29_01230	COG0800	Aldolase
LUX29_01235	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
LUX29_01250	COG3842	ATPase activity
LUX29_01255	COG0395	ABC-type sugar transport system, permease component
LUX29_01260	COG1175	transmembrane transport
LUX29_01270	COG3119	arylsulfatase activity
LUX29_01280	COG1215	transferase activity, transferring glycosyl groups
LUX29_01285	COG2244	polysaccharide biosynthetic process
LUX29_01295	COG1129	ABC transporter
LUX29_01300	COG4214	carbohydrate transport
LUX29_01315	COG3618	amidohydrolase
LUX29_01325	COG4608	Belongs to the ABC transporter superfamily
LUX29_01330	COG0444	Belongs to the ABC transporter superfamily
LUX29_01335	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_01340	COG0601	transmembrane transport
LUX29_01345	COG0747	negative chemotaxis
LUX29_01365	COG2094	Belongs to the DNA glycosylase MPG family
LUX29_01370	COG2197	response regulator
LUX29_01375	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LUX29_01390	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LUX29_01440	COG0747	negative chemotaxis
LUX29_01445	COG0601	transmembrane transport
LUX29_01450	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_01455	COG4172	Belongs to the ABC transporter superfamily
LUX29_01460	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LUX29_01475	COG1802	Transcriptional regulator
LUX29_01480	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LUX29_01485	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LUX29_01510	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LUX29_01515	COG0431	NADPH-dependent FMN reductase
LUX29_01540	COG3634	alkyl hydroperoxide reductase activity
LUX29_01560	COG0789	Transcriptional regulator
LUX29_01565	COG0583	DNA-binding transcription factor activity
LUX29_01570	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_01595	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_01600	COG1522	sequence-specific DNA binding
LUX29_01620	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LUX29_01635	COG0601	transmembrane transport
LUX29_01640	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_01645	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_01660	COG0473	3-isopropylmalate dehydrogenase activity
LUX29_01690	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_01715	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LUX29_01720	COG1414	Transcriptional regulator
LUX29_01725	COG2376	Dihydroxyacetone kinase
LUX29_01730	COG2376	Dihydroxyacetone kinase
LUX29_01740	COG2080	2 iron, 2 sulfur cluster binding
LUX29_01745	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
LUX29_01750	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LUX29_01770	COG1132	(ABC) transporter
LUX29_01780	COG1505	serine-type exopeptidase activity
LUX29_01805	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LUX29_01820	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LUX29_01830	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LUX29_01845	COG1175	transmembrane transport
LUX29_01850	COG1177	transmembrane transport
LUX29_01855	COG3842	ATPase activity
LUX29_01865	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_01865	COG0604	alcohol dehydrogenase
LUX29_01865	COG3321	synthase
LUX29_01885	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_01905	COG3158	transport of potassium into the cell
LUX29_01910	COG0351	phosphomethylpyrimidine kinase
LUX29_01935	COG1741	Belongs to the pirin family
LUX29_01950	COG2814	Major facilitator Superfamily
LUX29_01960	COG1414	Transcriptional regulator
LUX29_01970	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LUX29_01970	COG0475	glutathione-regulated potassium exporter activity
LUX29_01975	COG0460	homoserine dehydrogenase
LUX29_01980	COG1063	alcohol dehydrogenase
LUX29_01990	COG1335	isochorismatase
LUX29_02010	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_02025	COG1278	Cold shock
LUX29_02040	COG0583	DNA-binding transcription factor activity
LUX29_02050	COG0640	Transcriptional regulator
LUX29_02075	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LUX29_02075	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LUX29_02080	COG0284	orotidine-5'-phosphate decarboxylase activity
LUX29_02115	COG0159	tryptophan synthase activity
LUX29_02125	COG0285	dihydrofolate synthase activity
LUX29_02135	COG3963	phosphatidate phosphatase activity
LUX29_02140	COG0484	heat shock protein binding
LUX29_02145	COG0443	Heat shock 70 kDa protein
LUX29_02150	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LUX29_02155	COG3181	Tripartite tricarboxylate transporter family receptor
LUX29_02170	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_02175	COG4134	Bacterial extracellular solute-binding protein
LUX29_02180	COG1643	Atp-dependent helicase
LUX29_02185	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
LUX29_02195	COG1388	LysM domain
LUX29_02195	COG1376	ErfK ybiS ycfS ynhG family protein
LUX29_02240	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LUX29_02245	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LUX29_02250	COG4558	Periplasmic binding protein
LUX29_02275	COG0438	transferase activity, transferring glycosyl groups
LUX29_02295	COG2113	Glycine betaine
LUX29_02305	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LUX29_02315	COG0539	negative regulation of cytoplasmic translation
LUX29_02325	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LUX29_02345	COG0131	Imidazoleglycerol-phosphate dehydratase
LUX29_02355	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LUX29_02360	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LUX29_02365	COG0107	imidazoleglycerol-phosphate synthase activity
LUX29_02370	COG0140	phosphoribosyl-ATP diphosphatase activity
LUX29_02380	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LUX29_02385	COG2197	response regulator
LUX29_02390	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LUX29_02395	COG2133	pyrroloquinoline quinone binding
LUX29_02405	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LUX29_02435	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LUX29_02450	COG0789	Transcriptional regulator
LUX29_02470	COG0587	DNA-directed DNA polymerase activity
LUX29_02495	COG2301	Belongs to the HpcH HpaI aldolase family
LUX29_02500	COG0066	3-isopropylmalate dehydratase activity
LUX29_02505	COG0473	3-isopropylmalate dehydrogenase activity
LUX29_02510	COG0477	Major facilitator Superfamily
LUX29_02515	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LUX29_02520	COG2885	chlorophyll binding
LUX29_02525	COG2814	Major facilitator Superfamily
LUX29_02535	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LUX29_02575	COG0438	transferase activity, transferring glycosyl groups
LUX29_02580	COG1091	dTDP-4-dehydrorhamnose reductase activity
LUX29_02585	COG1088	dTDP-glucose 4,6-dehydratase activity
LUX29_02590	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
LUX29_02625	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LUX29_02630	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LUX29_02635	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LUX29_02650	COG0495	leucyl-tRNA aminoacylation
LUX29_02680	COG0445	tRNA wobble uridine modification
LUX29_02690	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LUX29_02695	COG3265	gluconokinase activity
LUX29_02700	COG1981	membrane
LUX29_02705	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LUX29_02710	COG0424	maF-like protein
LUX29_02715	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LUX29_02725	COG0237	dephospho-CoA kinase activity
LUX29_02730	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LUX29_02735	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LUX29_02760	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LUX29_02775	COG0501	Belongs to the peptidase M48B family
LUX29_02780	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LUX29_02780	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LUX29_02790	COG0138	bifunctional purine biosynthesis protein purh
LUX29_02795	COG2902	Dehydrogenase
LUX29_02805	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
LUX29_02810	COG0288	reversible hydration of carbon dioxide
LUX29_02815	COG2845	Protein of unknown function (DUF459)
LUX29_02820	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LUX29_02825	COG0039	L-malate dehydrogenase activity
LUX29_02830	COG0045	succinate-CoA ligase (ADP-forming) activity
LUX29_02835	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LUX29_02840	COG0567	Dehydrogenase, E1 component
LUX29_02845	COG0508	dehydrogenase complex catalyzes the overall conversion of
LUX29_02850	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_02860	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LUX29_02875	COG1764	response to oxidative stress
LUX29_02910	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LUX29_02925	COG1228	amidohydrolase
LUX29_02935	COG2186	Transcriptional regulator
LUX29_02940	COG1250	3-hydroxyacyl-CoA dehydrogenase
LUX29_02940	COG0824	Thioesterase
LUX29_02945	COG3246	L-lysine catabolic process to acetate
LUX29_02960	COG0784	Response regulator, receiver
LUX29_02965	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LUX29_02970	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_02980	COG1522	sequence-specific DNA binding
LUX29_02985	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LUX29_02990	COG1126	abc transporter atp-binding protein
LUX29_03000	COG0765	amino acid transport
LUX29_03005	COG0765	amino acid transport
LUX29_03010	COG3473	Maleate cis-trans isomerase
LUX29_03015	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LUX29_03020	COG2423	ornithine cyclodeaminase activity
LUX29_03025	COG0006	proline dipeptidase activity
LUX29_03030	COG3608	succinylglutamate desuccinylase aspartoacylase
LUX29_03040	COG0783	Belongs to the Dps family
LUX29_03050	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
LUX29_03060	COG4993	Dehydrogenase
LUX29_03075	COG1177	transmembrane transport
LUX29_03080	COG1176	ABC-type spermidine putrescine transport system, permease component I
LUX29_03085	COG3842	ATPase activity
LUX29_03100	COG0436	Aminotransferase
LUX29_03110	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_03115	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_03120	COG1129	ABC transporter
LUX29_03125	COG1879	ABC-type sugar transport system periplasmic component
LUX29_03135	COG2204	response regulator
LUX29_03140	COG4191	Histidine kinase
LUX29_03145	COG1301	dicarboxylic acid transport
LUX29_03155	COG2985	domain, Protein
LUX29_03170	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_03175	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LUX29_03180	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LUX29_03200	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_03220	COG1846	Transcriptional regulator
LUX29_03225	COG0583	DNA-binding transcription factor activity
LUX29_03230	COG1335	isochorismatase
LUX29_03245	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LUX29_03250	COG1116	anion transmembrane transporter activity
LUX29_03310	COG0028	Belongs to the TPP enzyme family
LUX29_03315	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LUX29_03335	COG0346	lactoylglutathione lyase activity
LUX29_03340	COG0045	succinate-CoA ligase (ADP-forming) activity
LUX29_03340	COG1042	CoA-binding domain protein
LUX29_03340	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LUX29_03355	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LUX29_03355	COG2169	Transcriptional regulator
LUX29_03360	COG0318	PFAM AMP-dependent synthetase and ligase
LUX29_03365	COG0410	ABC transporter
LUX29_03385	COG1022	Amp-dependent synthetase and ligase
LUX29_03400	COG1024	Enoyl-CoA hydratase
LUX29_03415	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LUX29_03420	COG1960	acyl-CoA dehydrogenase activity
LUX29_03430	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
LUX29_03440	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LUX29_03445	COG1126	abc transporter atp-binding protein
LUX29_03455	COG0765	amino acid transport
LUX29_03460	COG0765	amino acid transport
LUX29_03470	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LUX29_03470	COG2010	Cytochrome c
LUX29_03475	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LUX29_03495	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
LUX29_03510	COG1704	LemA family
LUX29_03515	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
LUX29_03525	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LUX29_03530	COG1187	pseudouridine synthase activity
LUX29_03535	COG2813	Specifically methylates the guanine in position
LUX29_03540	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LUX29_03550	COG0318	PFAM AMP-dependent synthetase and ligase
LUX29_03615	COG1120	ATPase activity
LUX29_03620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LUX29_03625	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LUX29_03630	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LUX29_03640	COG4774	siderophore transport
LUX29_03640	COG1629	transport
LUX29_03725	COG0741	lytic transglycosylase activity
LUX29_03750	COG4962	Type ii secretion system protein e
LUX29_03765	COG3451	type IV secretory pathway VirB4
LUX29_03780	COG3846	protein secretion by the type IV secretion system
LUX29_03795	COG2948	multi-organism process
LUX29_03805	COG0583	DNA-binding transcription factor activity
LUX29_03820	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LUX29_03825	COG1522	sequence-specific DNA binding
LUX29_03835	COG0006	proline dipeptidase activity
LUX29_03845	COG1476	TRANSCRIPTIONal
LUX29_03865	COG1414	Transcriptional regulator
LUX29_03870	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LUX29_03875	COG3181	Tripartite tricarboxylate transporter family receptor
LUX29_03895	COG5489	Protein of unknown function (DUF736)
LUX29_03905	COG1177	transmembrane transport
LUX29_03910	COG1176	ABC-type spermidine putrescine transport system, permease component I
LUX29_03920	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_03930	COG3842	ATPase activity
LUX29_03940	COG2376	Dihydroxyacetone kinase
LUX29_03955	COG0473	3-isopropylmalate dehydrogenase activity
LUX29_03960	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LUX29_03965	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LUX29_03975	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LUX29_03980	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LUX29_03985	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LUX29_03990	COG1609	Transcriptional regulator
LUX29_03995	COG0471	metal ion transport
LUX29_03995	COG0490	domain, Protein
LUX29_04005	COG2084	Dehydrogenase
LUX29_04010	COG3842	ATPase activity
LUX29_04015	COG0395	ABC-type sugar transport system, permease component
LUX29_04025	COG1653	transport
LUX29_04035	COG4948	Mandelate Racemase Muconate Lactonizing
LUX29_04040	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LUX29_04045	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
LUX29_04100	COG0667	Aldo Keto reductase
LUX29_04110	COG0667	Aldo Keto reductase
LUX29_04115	COG0667	Aldo Keto reductase
LUX29_04130	COG2080	2 iron, 2 sulfur cluster binding
LUX29_04135	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
LUX29_04140	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LUX29_04200	COG0402	S-adenosylhomocysteine deaminase activity
LUX29_04210	COG0154	amidase activity
LUX29_04220	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LUX29_04225	COG1116	anion transmembrane transporter activity
LUX29_04230	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_04250	COG4608	Belongs to the ABC transporter superfamily
LUX29_04255	COG0444	Belongs to the ABC transporter superfamily
LUX29_04260	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_04270	COG0747	negative chemotaxis
LUX29_04275	COG4948	Mandelate Racemase Muconate Lactonizing
LUX29_04280	COG2186	Transcriptional regulator
LUX29_04285	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LUX29_04290	COG1454	alcohol dehydrogenase
LUX29_04300	COG4948	Mandelate Racemase Muconate Lactonizing
LUX29_04305	COG0747	negative chemotaxis
LUX29_04310	COG0601	transmembrane transport
LUX29_04320	COG0747	negative chemotaxis
LUX29_04325	COG0179	Fumarylacetoacetate (FAA) hydrolase
LUX29_04335	COG0281	malic enzyme
LUX29_04335	COG0280	phosphate acetyltransferase
LUX29_04350	COG1737	Transcriptional regulator
LUX29_04350	COG0837	glucose binding
LUX29_04360	COG1175	transmembrane transport
LUX29_04365	COG3842	ATPase activity
LUX29_04370	COG3964	amidohydrolase
LUX29_04375	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_04390	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LUX29_04405	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LUX29_04405	COG3620	sequence-specific DNA binding
LUX29_04405	COG0617	tRNA 3'-terminal CCA addition
LUX29_04415	COG1477	protein flavinylation
LUX29_04425	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LUX29_04430	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LUX29_04445	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LUX29_04465	COG4191	Histidine kinase
LUX29_04470	COG4566	intracellular signal transduction
LUX29_04510	COG2828	Protein conserved in bacteria
LUX29_04515	COG0583	DNA-binding transcription factor activity
LUX29_04520	COG4166	transmembrane transport
LUX29_04525	COG0601	transmembrane transport
LUX29_04530	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_04535	COG0444	Belongs to the ABC transporter superfamily
LUX29_04540	COG4608	Belongs to the ABC transporter superfamily
LUX29_04575	COG0583	DNA-binding transcription factor activity
LUX29_04585	COG4221	oxidoreductase activity
LUX29_04590	COG0583	DNA-binding transcription factor activity
LUX29_04605	COG0667	Aldo Keto reductase
LUX29_04610	COG0583	DNA-binding transcription factor activity
LUX29_04625	COG1538	Outer membrane efflux protein
LUX29_04640	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LUX29_04655	COG2186	Transcriptional regulator
LUX29_04660	COG1802	Transcriptional regulator
LUX29_04665	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LUX29_04675	COG2376	Dihydroxyacetone kinase
LUX29_04700	COG0583	DNA-binding transcription factor activity
LUX29_04705	COG0667	Aldo Keto reductase
LUX29_04715	COG0579	oxidoreductase
LUX29_04725	COG0534	Mate efflux family protein
LUX29_04740	COG2072	flavoprotein involved in K transport
LUX29_04745	COG3842	ATPase activity
LUX29_04750	COG1177	transmembrane transport
LUX29_04755	COG1176	ABC-type spermidine putrescine transport system, permease component I
LUX29_04770	COG2223	nitrite transmembrane transporter activity
LUX29_04775	COG0287	Prephenate dehydrogenase
LUX29_04780	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LUX29_04790	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LUX29_04795	COG2813	Specifically methylates the guanine in position
LUX29_04795	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LUX29_04800	COG0667	Aldo Keto reductase
LUX29_04810	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LUX29_04820	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LUX29_04825	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LUX29_04860	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LUX29_04865	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LUX29_04900	COG0653	protein targeting
LUX29_04905	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LUX29_04910	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LUX29_04920	COG0494	nUDIX hydrolase
LUX29_04930	COG2226	methyltransferase
LUX29_04935	COG1040	competence protein
LUX29_04940	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LUX29_04945	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LUX29_04990	COG1175	transmembrane transport
LUX29_05005	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_05010	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LUX29_05020	COG0745	RESPONSE REGULATOR receiver
LUX29_05030	COG0243	molybdopterin cofactor binding
LUX29_05035	COG2264	protein methyltransferase activity
LUX29_05055	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LUX29_05060	COG0181	hydroxymethylbilane synthase activity
LUX29_05085	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LUX29_05095	COG3546	catalase activity
LUX29_05105	COG4974	Belongs to the 'phage' integrase family
LUX29_05165	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LUX29_05170	COG2011	ABC-type metal ion transport system permease component
LUX29_05175	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LUX29_05185	COG1217	gtp-binding protein TYPA
LUX29_05200	COG2814	Major facilitator Superfamily
LUX29_05205	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LUX29_05210	COG1620	l-lactate permease
LUX29_05215	COG0137	argininosuccinate synthase activity
LUX29_05235	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LUX29_05250	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LUX29_05260	COG4181	ATPase activity
LUX29_05265	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LUX29_05270	COG0670	Belongs to the BI1 family
LUX29_05290	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LUX29_05300	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LUX29_05305	COG1247	-acetyltransferase
LUX29_05310	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LUX29_05320	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LUX29_05325	COG1126	abc transporter atp-binding protein
LUX29_05330	COG0765	amino acid transport
LUX29_05335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_05350	COG2917	probably involved in intracellular septation
LUX29_05355	COG0552	protein localization to endoplasmic reticulum
LUX29_05360	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LUX29_05365	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LUX29_05375	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LUX29_05380	COG0228	four-way junction DNA binding
LUX29_05385	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LUX29_05390	COG0336	Belongs to the RNA methyltransferase TrmD family
LUX29_05395	COG0335	large ribosomal subunit rRNA binding
LUX29_05415	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LUX29_05445	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LUX29_05455	COG0783	Belongs to the Dps family
LUX29_05470	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LUX29_05475	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LUX29_05480	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LUX29_05485	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LUX29_05490	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LUX29_05505	COG0494	nUDIX hydrolase
LUX29_05510	COG0793	Belongs to the peptidase S41A family
LUX29_05520	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LUX29_05525	COG0799	negative regulation of ribosome biogenesis
LUX29_05530	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LUX29_05535	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LUX29_05550	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LUX29_05555	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LUX29_05585	COG0559	Belongs to the binding-protein-dependent transport system permease family
LUX29_05635	COG2391	methyltransferase activity
LUX29_05645	COG0583	DNA-binding transcription factor activity
LUX29_05650	COG1228	amidohydrolase
LUX29_05665	COG1116	anion transmembrane transporter activity
LUX29_05685	COG4977	sequence-specific DNA binding
LUX29_05720	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_05725	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
LUX29_05730	COG2186	Transcriptional regulator
LUX29_05745	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LUX29_05780	COG2198	Histidine kinase
LUX29_05780	COG2205	protein histidine kinase activity
LUX29_05780	COG0784	Response regulator, receiver
LUX29_05800	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LUX29_05810	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LUX29_05815	COG1802	Transcriptional regulator
LUX29_05820	COG1312	Catalyzes the dehydration of D-mannonate
LUX29_05830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LUX29_05835	COG1309	transcriptional regulator
LUX29_05845	COG5001	Diguanylate cyclase
LUX29_05845	COG5002	protein histidine kinase activity
LUX29_05855	COG1175	transmembrane transport
LUX29_05860	COG0395	ABC-type sugar transport system, permease component
LUX29_05870	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LUX29_05875	COG0387	Pfam Sodium calcium exchanger
LUX29_05880	COG3181	Tripartite tricarboxylate transporter family receptor
LUX29_05895	COG1414	Transcriptional regulator
LUX29_05900	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_05905	COG0765	amino acid transport
LUX29_05910	COG1126	abc transporter atp-binding protein
LUX29_05915	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_05930	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LUX29_05945	COG0438	transferase activity, transferring glycosyl groups
LUX29_05950	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LUX29_05955	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LUX29_05960	COG0505	Belongs to the CarA family
LUX29_05975	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LUX29_06000	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_06005	COG1129	ABC transporter
LUX29_06010	COG1879	ABC-type sugar transport system periplasmic component
LUX29_06020	COG2197	response regulator
LUX29_06045	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LUX29_06050	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
LUX29_06050	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LUX29_06060	COG0642	Histidine kinase
LUX29_06065	COG0745	RESPONSE REGULATOR receiver
LUX29_06080	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LUX29_06095	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LUX29_06100	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LUX29_06105	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LUX29_06110	COG1137	ATPase activity
LUX29_06125	COG0616	signal peptide processing
LUX29_06145	COG0116	Belongs to the methyltransferase superfamily
LUX29_06145	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LUX29_06155	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LUX29_06170	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LUX29_06175	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LUX29_06185	COG0180	Tryptophanyl-tRNA synthetase
LUX29_06195	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
LUX29_06205	COG0456	acetyltransferase
LUX29_06225	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LUX29_06235	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LUX29_06240	COG1396	sequence-specific DNA binding
LUX29_06245	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LUX29_06250	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LUX29_06255	COG0779	Required for maturation of 30S ribosomal subunits
LUX29_06270	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LUX29_06275	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LUX29_06285	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LUX29_06290	COG1185	polyribonucleotide nucleotidyltransferase activity
LUX29_06295	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LUX29_06300	COG0165	Argininosuccinate lyase
LUX29_06310	COG0019	diaminopimelate decarboxylase activity
LUX29_06320	COG0745	RESPONSE REGULATOR receiver
LUX29_06325	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
LUX29_06335	COG2884	Cell division ATP-binding protein ftsE
LUX29_06435	COG2354	Protein conserved in bacteria
LUX29_06455	COG1131	(ABC) transporter
LUX29_06470	COG2197	response regulator
LUX29_06505	COG2233	PERMEase
LUX29_06520	COG1795	PFAM Formaldehyde-activating enzyme (Fae)
LUX29_06545	COG0702	epimerase
LUX29_06560	COG1229	Formylmethanofuran dehydrogenase subunit A
LUX29_06565	COG2037	Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT)
LUX29_06620	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
LUX29_06630	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LUX29_06640	COG3845	ABC transporter
LUX29_06645	COG4603	Belongs to the binding-protein-dependent transport system permease family
LUX29_06650	COG1079	Belongs to the binding-protein-dependent transport system permease family
LUX29_06660	COG0402	S-adenosylhomocysteine deaminase activity
LUX29_06680	COG0366	Alpha amylase catalytic
LUX29_06690	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LUX29_06705	COG1473	amidohydrolase
LUX29_06710	COG1686	Belongs to the peptidase S11 family
LUX29_06715	COG0523	cobalamin synthesis protein
LUX29_06720	COG0425	Belongs to the sulfur carrier protein TusA family
LUX29_06735	COG0400	carboxylic ester hydrolase activity
LUX29_06740	COG0604	alcohol dehydrogenase
LUX29_06755	COG0318	PFAM AMP-dependent synthetase and ligase
LUX29_06770	COG2968	Membrane
LUX29_06800	COG0477	Major facilitator Superfamily
LUX29_06850	COG0583	DNA-binding transcription factor activity
LUX29_06855	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_06865	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LUX29_06870	COG1175	transmembrane transport
LUX29_06875	COG0395	ABC-type sugar transport system, permease component
LUX29_06880	COG2390	Transcriptional regulator
LUX29_06900	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LUX29_06905	COG1132	(ABC) transporter
LUX29_06920	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LUX29_06920	COG2857	Cytochrome c1
LUX29_06945	COG2030	dehydratase
LUX29_06950	COG0012	GTP binding
LUX29_06955	COG0193	aminoacyl-tRNA hydrolase activity
LUX29_06960	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LUX29_06970	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LUX29_06990	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LUX29_07010	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LUX29_07045	COG0745	RESPONSE REGULATOR receiver
LUX29_07050	COG1846	Transcriptional regulator
LUX29_07060	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LUX29_07065	COG1278	Cold shock
LUX29_07075	COG0556	nucleotide-excision repair
LUX29_07085	COG1120	ATPase activity
LUX29_07090	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LUX29_07095	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LUX29_07105	COG4774	siderophore transport
LUX29_07125	COG0625	glutathione transferase activity
LUX29_07130	COG0436	Aminotransferase
LUX29_07135	COG0583	DNA-binding transcription factor activity
LUX29_07140	COG0492	ferredoxin-NADP+ reductase activity
LUX29_07145	COG5265	(ABC) transporter
LUX29_07150	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LUX29_07165	COG4251	negative regulation of phosphorylation
LUX29_07175	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_07180	COG0174	glutamine synthetase
LUX29_07190	COG2224	Isocitrate lyase
LUX29_07195	COG1396	sequence-specific DNA binding
LUX29_07195	COG3800	Transcriptional regulator
LUX29_07215	COG3842	ATPase activity
LUX29_07220	COG1176	ABC-type spermidine putrescine transport system, permease component I
LUX29_07225	COG1177	transmembrane transport
LUX29_07240	COG2205	protein histidine kinase activity
LUX29_07255	COG2267	carboxylic ester hydrolase activity
LUX29_07260	COG0583	DNA-binding transcription factor activity
LUX29_07275	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_07285	COG3706	GGDEF domain
LUX29_07290	COG0438	transferase activity, transferring glycosyl groups
LUX29_07300	COG1570	exodeoxyribonuclease VII activity
LUX29_07305	COG0583	DNA-binding transcription factor activity
LUX29_07320	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_07335	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LUX29_07340	COG0583	DNA-binding transcription factor activity
LUX29_07345	COG1253	flavin adenine dinucleotide binding
LUX29_07365	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_07380	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
LUX29_07385	COG0277	FAD linked oxidase domain protein
LUX29_07390	COG0277	FAD linked oxidase domain protein
LUX29_07395	COG0247	lactate metabolic process
LUX29_07400	COG1376	ErfK ybiS ycfS ynhG family protein
LUX29_07475	COG5507	3-demethylubiquinone-9 3-methyltransferase
LUX29_07505	COG0765	amino acid transport
LUX29_07520	COG3046	protein related to deoxyribodipyrimidine photolyase
LUX29_07530	COG0251	oxidation-reduction process
LUX29_07550	COG2818	Glycosylase
LUX29_07560	COG0124	histidyl-tRNA synthetase
LUX29_07565	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
LUX29_07570	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LUX29_07575	COG2259	Doxx family
LUX29_07590	COG0459	protein refolding
LUX29_07605	COG0196	riboflavin kinase activity
LUX29_07610	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LUX29_07620	COG0590	tRNA wobble adenosine to inosine editing
LUX29_07625	COG1187	pseudouridine synthase activity
LUX29_07630	COG0742	ribosomal rna small subunit methyltransferase
LUX29_07635	COG0612	Peptidase, M16
LUX29_07640	COG0612	Peptidase, M16
LUX29_07645	COG1752	Esterase of the alpha-beta hydrolase superfamily
LUX29_07660	COG0312	modulator of DNA gyrase
LUX29_07680	COG1519	Transferase
LUX29_07685	COG1663	tetraacyldisaccharide 4'-kinase activity
LUX29_07690	COG1064	alcohol dehydrogenase
LUX29_07695	COG4172	Belongs to the ABC transporter superfamily
LUX29_07705	COG0601	transmembrane transport
LUX29_07735	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LUX29_07750	COG0033	Phosphoglucomutase
LUX29_07755	COG0297	glycogen (starch) synthase activity
LUX29_07760	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LUX29_07765	COG0058	SHG alpha-glucan phosphorylase activity
LUX29_07770	COG0166	Belongs to the GPI family
LUX29_07785	COG0729	surface antigen
LUX29_07805	COG1294	oxidase, subunit
LUX29_07810	COG1271	oxidase subunit
LUX29_07835	COG1562	ergosterol biosynthetic process
LUX29_07845	COG0142	geranyltranstransferase activity
LUX29_07855	COG1304	FMN binding
LUX29_07880	COG3833	ABC-type maltose transport systems, permease component
LUX29_07890	COG3842	ATPase activity
LUX29_07900	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LUX29_07910	COG4208	sulfate ABC transporter
LUX29_07920	COG2274	protein secretion by the type I secretion system
LUX29_07925	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LUX29_07945	COG0251	oxidation-reduction process
LUX29_07965	COG2824	Alkylphosphonate utilization operon protein PhnA
LUX29_07990	COG2066	Belongs to the glutaminase family
LUX29_08000	COG0656	L-ascorbic acid biosynthetic process
LUX29_08030	COG0803	Belongs to the bacterial solute-binding protein 9 family
LUX29_08035	COG1121	(ABC) transporter
LUX29_08040	COG1321	iron dependent repressor
LUX29_08040	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LUX29_08045	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LUX29_08060	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LUX29_08065	COG4948	Mandelate Racemase Muconate Lactonizing
LUX29_08070	COG0277	FAD linked oxidase domain protein
LUX29_08075	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LUX29_08095	COG4451	ribulose bisphosphate carboxylase, small
LUX29_08115	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
LUX29_08120	COG0583	DNA-binding transcription factor activity
LUX29_08125	COG0248	Ppx GppA phosphatase
LUX29_08130	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LUX29_08135	COG0477	Major facilitator Superfamily
LUX29_08150	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
LUX29_08185	COG0583	DNA-binding transcription factor activity
LUX29_08200	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
LUX29_08250	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LUX29_08270	COG1830	Aldolase
LUX29_08285	COG4191	Histidine kinase
LUX29_08285	COG0784	Response regulator, receiver
LUX29_08290	COG2202	Pas domain
LUX29_08290	COG3920	Histidine kinase
LUX29_08295	COG0789	Transcriptional regulator
LUX29_08305	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LUX29_08320	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LUX29_08325	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
LUX29_08335	COG0535	radical SAM domain protein
LUX29_08340	COG0598	Magnesium transport protein CorA
LUX29_08350	COG0433	COG0433 Predicted ATPase
LUX29_08355	COG1376	ErfK ybiS ycfS ynhG family protein
LUX29_08360	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LUX29_08365	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LUX29_08375	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LUX29_08380	COG2111	Na H antiporter
LUX29_08380	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LUX29_08385	COG2111	Na H antiporter
LUX29_08390	COG1006	Multisubunit Na H antiporter MnhC subunit
LUX29_08395	COG0651	ATP synthesis coupled electron transport
LUX29_08400	COG1863	multisubunit Na H antiporter MnhE subunit
LUX29_08405	COG2212	antiporter activity
LUX29_08410	COG1320	monovalent cation:proton antiporter activity
LUX29_08415	COG1218	3'(2'),5'-bisphosphate nucleotidase
LUX29_08425	COG3177	Filamentation induced by cAMP protein fic
LUX29_08430	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LUX29_08435	COG0493	'glutamate synthase
LUX29_08445	COG1309	transcriptional regulator
LUX29_08460	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
LUX29_08465	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_08470	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_08495	COG0513	Belongs to the DEAD box helicase family
LUX29_08500	COG0488	(ABC) transporter
LUX29_08505	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LUX29_08510	COG1566	PFAM secretion protein HlyD family protein
LUX29_08520	COG5487	UPF0391 membrane protein
LUX29_08565	COG0784	Response regulator, receiver
LUX29_08570	COG3920	Histidine kinase
LUX29_08570	COG2202	Pas domain
LUX29_08585	COG0489	protein tyrosine kinase activity
LUX29_08600	COG0494	nUDIX hydrolase
LUX29_08605	COG4172	Belongs to the ABC transporter superfamily
LUX29_08610	COG4239	(ABC) transporter, permease
LUX29_08615	COG4174	ABC transporter (Permease)
LUX29_08620	COG4166	transmembrane transport
LUX29_08625	COG4166	transmembrane transport
LUX29_08630	COG3474	cytochrome
LUX29_08635	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LUX29_08640	COG0077	Prephenate dehydratase
LUX29_08640	COG1605	Chorismate mutase
LUX29_08645	COG2816	NAD+ diphosphatase activity
LUX29_08660	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LUX29_08670	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LUX29_08680	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_08690	COG0101	tRNA pseudouridine synthase activity
LUX29_08695	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LUX29_08700	COG0242	peptide deformylase activity
LUX29_08705	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LUX29_08710	COG0659	secondary active sulfate transmembrane transporter activity
LUX29_08725	COG2171	N-acyltransferase activity
LUX29_08745	COG0477	Major facilitator Superfamily
LUX29_08750	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LUX29_08760	COG2084	Dehydrogenase
LUX29_08765	COG3395	kinase activity
LUX29_08770	COG3622	Belongs to the hyi family
LUX29_08775	COG1349	DNA-binding transcription factor activity
LUX29_08780	COG0235	Class ii aldolase
LUX29_08790	COG4120	Belongs to the binding-protein-dependent transport system permease family
LUX29_08800	COG0668	transmembrane transport
LUX29_08805	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LUX29_08815	COG0330	HflC and HflK could
LUX29_08825	COG5310	Homospermidine synthase
LUX29_08845	COG4957	zinc ion binding
LUX29_08850	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
LUX29_08850	COG0392	lysyltransferase activity
LUX29_08870	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LUX29_08890	COG0745	RESPONSE REGULATOR receiver
LUX29_08905	COG0579	oxidoreductase
LUX29_08910	COG3750	Belongs to the UPF0335 family
LUX29_08925	COG0469	pyruvate kinase activity
LUX29_08930	COG0457	Tetratricopeptide repeat
LUX29_08935	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LUX29_08940	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LUX29_08975	COG0483	inositol monophosphate 1-phosphatase activity
LUX29_09015	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LUX29_09025	COG2967	ApaG domain
LUX29_09035	COG0717	Belongs to the dCTP deaminase family
LUX29_09045	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_09060	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_09070	COG1160	GTP binding
LUX29_09085	COG0356	it plays a direct role in the translocation of protons across the membrane
LUX29_09090	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LUX29_09095	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LUX29_09100	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LUX29_09105	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LUX29_09120	COG0521	Mo-molybdopterin cofactor biosynthetic process
LUX29_09125	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
LUX29_09135	COG0142	geranyltranstransferase activity
LUX29_09160	COG0752	glycyl-tRNA synthetase alpha subunit
LUX29_09165	COG2321	neutral zinc metallopeptidase
LUX29_09170	COG0751	glycine-tRNA ligase activity
LUX29_09180	COG0009	L-threonylcarbamoyladenylate synthase
LUX29_09195	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LUX29_09205	COG3842	ATPase activity
LUX29_09215	COG1063	alcohol dehydrogenase
LUX29_09220	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LUX29_09225	COG0151	Belongs to the GarS family
LUX29_09230	COG1960	acyl-CoA dehydrogenase activity
LUX29_09240	COG1024	Enoyl-CoA hydratase
LUX29_09240	COG1250	3-hydroxyacyl-CoA dehydrogenase
LUX29_09245	COG1960	acyl-CoA dehydrogenase activity
LUX29_09250	COG1024	Enoyl-CoA hydratase
LUX29_09255	COG0586	Pfam SNARE associated Golgi protein
LUX29_09260	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LUX29_09265	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
LUX29_09270	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LUX29_09275	COG1722	exodeoxyribonuclease VII activity
LUX29_09280	COG0123	including yeast histone deacetylase and acetoin utilization protein
LUX29_09285	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LUX29_09300	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LUX29_09305	COG0484	heat shock protein binding
LUX29_09315	COG0259	pyridoxamine-phosphate oxidase activity
LUX29_09320	COG0312	modulator of DNA gyrase
LUX29_09335	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LUX29_09340	COG0109	protoheme IX farnesyltransferase activity
LUX29_09350	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
LUX29_09365	COG3346	SURF1 family
LUX29_09370	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LUX29_09375	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LUX29_09380	COG0328	RNA-DNA hybrid ribonuclease activity
LUX29_09395	COG1678	Uncharacterized ACR, COG1678
LUX29_09410	COG0612	Peptidase, M16
LUX29_09425	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LUX29_09430	COG2189	Belongs to the N(4) N(6)-methyltransferase family
LUX29_09460	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LUX29_09465	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LUX29_09465	COG0574	Belongs to the PEP-utilizing enzyme family
LUX29_09475	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LUX29_09480	COG1054	Belongs to the UPF0176 family
LUX29_09485	COG0477	Major facilitator Superfamily
LUX29_09490	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LUX29_09490	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LUX29_09495	COG0861	Integral membrane protein TerC family
LUX29_09500	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LUX29_09505	COG1363	Peptidase, m42
LUX29_09515	COG0367	asparagine synthase
LUX29_09525	COG0546	phosphoglycolate phosphatase activity
LUX29_09535	COG0531	amino acid
LUX29_09550	COG1522	sequence-specific DNA binding
LUX29_09560	COG1268	BioY protein
LUX29_09570	COG3932	Exopolysaccharide synthesis, ExoD
LUX29_09650	COG2202	Pas domain
LUX29_09650	COG3920	Histidine kinase
LUX29_09655	COG0784	Response regulator, receiver
LUX29_09655	COG4191	Histidine kinase
LUX29_09665	COG5001	Diguanylate cyclase
LUX29_09665	COG3300	MHYT domain
LUX29_09695	COG1793	dna ligase
LUX29_09710	COG0123	including yeast histone deacetylase and acetoin utilization protein
LUX29_09715	COG0167	dihydroorotate dehydrogenase activity
LUX29_09730	COG1970	mechanosensitive ion channel activity
LUX29_09745	COG0025	NhaP-type Na H and K H
LUX29_09765	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LUX29_09790	COG0601	transmembrane transport
LUX29_09810	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_09825	COG1999	signal sequence binding
LUX29_09835	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LUX29_09840	COG1845	cytochrome c oxidase, subunit III
LUX29_09845	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LUX29_09850	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LUX29_09855	COG0477	Major facilitator Superfamily
LUX29_09890	COG4303	Ethanolamine ammonia lyase large subunit
LUX29_09910	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_09915	COG4172	Belongs to the ABC transporter superfamily
LUX29_09925	COG0601	transmembrane transport
LUX29_09930	COG0747	negative chemotaxis
LUX29_09935	COG1349	DNA-binding transcription factor activity
LUX29_09965	COG0765	amino acid transport
LUX29_09970	COG0765	amino acid transport
LUX29_09980	COG1126	abc transporter atp-binding protein
LUX29_09985	COG2084	Dehydrogenase
LUX29_10000	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LUX29_10005	COG1177	transmembrane transport
LUX29_10010	COG1176	ABC-type spermidine putrescine transport system, permease component I
LUX29_10020	COG3842	ATPase activity
LUX29_10025	COG0459	protein refolding
LUX29_10070	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LUX29_10070	COG2010	Cytochrome c
LUX29_10080	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LUX29_10130	COG0483	inositol monophosphate 1-phosphatase activity
LUX29_10140	COG0071	Belongs to the small heat shock protein (HSP20) family
LUX29_10155	COG0067	glutamate synthase
LUX29_10155	COG0069	glutamate synthase activity
LUX29_10155	COG0070	glutamate synthase
LUX29_10165	COG3111	PFAM Bacterial OB fold (BOF) protein
LUX29_10175	COG2951	lytic endotransglycosylase activity
LUX29_10190	COG0346	lactoylglutathione lyase activity
LUX29_10200	COG0848	biopolymer transport protein
LUX29_10225	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LUX29_10225	COG2010	Cytochrome c
LUX29_10230	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LUX29_10245	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_10270	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LUX29_10275	COG0720	synthase
LUX29_10280	COG0602	queuosine metabolic process
LUX29_10295	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_10305	COG0747	negative chemotaxis
LUX29_10315	COG4172	Belongs to the ABC transporter superfamily
LUX29_10330	COG2181	nitrate reductase activity
LUX29_10330	COG0247	lactate metabolic process
LUX29_10335	COG0446	pyridine nucleotide-disulphide oxidoreductase
LUX29_10335	COG1902	pentaerythritol trinitrate reductase activity
LUX29_10345	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LUX29_10355	COG1760	l-serine dehydratase
LUX29_10365	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LUX29_10365	COG0446	pyridine nucleotide-disulphide oxidoreductase
LUX29_10375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_10380	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LUX29_10390	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
LUX29_10405	COG2022	thiamine diphosphate biosynthetic process
LUX29_10450	COG0586	Pfam SNARE associated Golgi protein
LUX29_10495	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
LUX29_10500	COG3023	N-Acetylmuramoyl-L-alanine amidase
LUX29_10515	COG2001	Belongs to the MraZ family
LUX29_10520	COG0275	rRNA processing
LUX29_10535	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LUX29_10545	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LUX29_10550	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LUX29_10560	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LUX29_10565	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LUX29_10575	COG1181	Belongs to the D-alanine--D-alanine ligase family
LUX29_10580	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LUX29_10585	COG0849	cell division
LUX29_10590	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LUX29_10600	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LUX29_10635	COG0006	proline dipeptidase activity
LUX29_10650	COG1999	signal sequence binding
LUX29_10660	COG2814	Major facilitator Superfamily
LUX29_10675	COG0210	DNA helicase
LUX29_10705	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
LUX29_10710	COG4948	Mandelate Racemase Muconate Lactonizing
LUX29_10715	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LUX29_10720	COG1127	ABC transporter
LUX29_10730	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LUX29_10730	COG3218	ABC-type transport auxiliary lipoprotein component
LUX29_10750	COG0633	Ferredoxin
LUX29_10760	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LUX29_10765	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LUX29_10780	COG3768	UPF0283 membrane protein
LUX29_10785	COG3106	COG3106 Predicted ATPase
LUX29_10815	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LUX29_10820	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LUX29_10825	COG1686	Belongs to the peptidase S11 family
LUX29_10865	COG1132	(ABC) transporter
LUX29_10870	COG1295	ribonuclease BN
LUX29_10880	COG2855	membrane
LUX29_10910	COG1278	Cold shock
LUX29_10915	COG0346	lactoylglutathione lyase activity
LUX29_10960	COG0671	phosphoesterase, PA-phosphatase related
LUX29_11065	COG3546	catalase activity
LUX29_11075	COG1278	Cold shock
LUX29_11115	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LUX29_11140	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
LUX29_11150	COG0316	Belongs to the HesB IscA family
LUX29_11160	COG0018	arginyl-trna synthetase
LUX29_11170	COG1472	Belongs to the glycosyl hydrolase 3 family
LUX29_11175	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LUX29_11180	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LUX29_11185	COG0805	protein transport
LUX29_11215	COG1862	Preprotein translocase
LUX29_11225	COG3737	Protein of unknown function (DUF498/DUF598)
LUX29_11240	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
LUX29_11255	COG0544	peptidyl-prolyl cis-trans isomerase activity
LUX29_11270	COG0740	serine-type endopeptidase activity
LUX29_11275	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LUX29_11280	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LUX29_11285	COG0776	regulation of translation
LUX29_11290	COG2814	Major facilitator Superfamily
LUX29_11310	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LUX29_11315	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LUX29_11320	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LUX29_11330	COG0649	NAD binding
LUX29_11335	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
LUX29_11340	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
LUX29_11350	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LUX29_11355	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LUX29_11365	COG0713	ATP synthesis coupled electron transport
LUX29_11380	COG1007	ATP synthesis coupled electron transport
LUX29_11395	COG0346	lactoylglutathione lyase activity
LUX29_11405	COG0442	prolyl-tRNA aminoacylation
LUX29_11415	COG1136	(ABC) transporter
LUX29_11445	COG0784	Response regulator, receiver
LUX29_11450	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LUX29_11470	COG0557	exoribonuclease II activity
LUX29_11475	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LUX29_11480	COG0758	DNA mediated transformation
LUX29_11485	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LUX29_11490	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LUX29_11495	COG0540	Belongs to the ATCase OTCase family
LUX29_11500	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LUX29_11505	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LUX29_11510	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LUX29_11530	COG4765	Protein conserved in bacteria
LUX29_11535	COG0625	glutathione transferase activity
LUX29_11545	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LUX29_11550	COG1902	pentaerythritol trinitrate reductase activity
LUX29_11560	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LUX29_11565	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LUX29_11570	COG0628	permease
LUX29_11580	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LUX29_11605	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_11610	COG1129	ABC transporter
LUX29_11620	COG2186	Transcriptional regulator
LUX29_11625	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LUX29_11630	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LUX29_11640	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LUX29_11660	COG0113	porphobilinogen synthase activity
LUX29_11680	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LUX29_11685	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LUX29_11690	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LUX29_11690	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LUX29_11705	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LUX29_11725	COG0416	fatty acid biosynthetic process
LUX29_11730	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LUX29_11735	COG0776	regulation of translation
LUX29_11765	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_11780	COG1609	Transcriptional regulator
LUX29_11790	COG0402	S-adenosylhomocysteine deaminase activity
LUX29_11805	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_11820	COG0154	amidase activity
LUX29_11835	COG1176	ABC-type spermidine putrescine transport system, permease component I
LUX29_11840	COG3842	ATPase activity
LUX29_11865	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_11895	COG0784	Response regulator, receiver
LUX29_11905	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_11910	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_11915	COG0601	transmembrane transport
LUX29_11925	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_11955	COG0785	Cytochrome C biogenesis protein
LUX29_11960	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LUX29_11980	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LUX29_11995	COG0187	DNA topoisomerase II activity
LUX29_12005	COG0174	glutamine synthetase
LUX29_12010	COG0347	Belongs to the P(II) protein family
LUX29_12015	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LUX29_12015	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LUX29_12020	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LUX29_12030	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_12045	COG2095	MarC family integral membrane protein
LUX29_12050	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LUX29_12055	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LUX29_12070	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LUX29_12075	COG0343	queuine tRNA-ribosyltransferase activity
LUX29_12085	COG3693	PFAM glycoside hydrolase, family 10
LUX29_12085	COG2382	esterase
LUX29_12095	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LUX29_12105	COG1733	regulation of RNA biosynthetic process
LUX29_12115	COG3300	MHYT domain
LUX29_12115	COG5001	Diguanylate cyclase
LUX29_12135	COG3360	Dodecin
LUX29_12185	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LUX29_12190	COG2207	Transcriptional regulator
LUX29_12220	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LUX29_12240	COG0559	Belongs to the binding-protein-dependent transport system permease family
LUX29_12255	COG1984	allophanate hydrolase subunit 2
LUX29_12265	COG0439	Biotin carboxylase
LUX29_12270	COG0511	ligase activity, forming carbon-carbon bonds
LUX29_12275	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LUX29_12280	COG0583	DNA-binding transcription factor activity
LUX29_12315	COG4221	oxidoreductase activity
LUX29_12330	COG0601	transmembrane transport
LUX29_12335	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_12340	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_12345	COG0667	Aldo Keto reductase
LUX29_12365	COG2203	Gaf domain
LUX29_12365	COG3706	GGDEF domain
LUX29_12365	COG4251	negative regulation of phosphorylation
LUX29_12365	COG5001	Diguanylate cyclase
LUX29_12425	COG3706	GGDEF domain
LUX29_12440	COG0655	NAD(P)H dehydrogenase (quinone) activity
LUX29_12445	COG1058	Belongs to the CinA family
LUX29_12445	COG1546	Belongs to the CinA family
LUX29_12450	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LUX29_12460	COG3284	Transcriptional regulator
LUX29_12465	COG2239	Acts as a magnesium transporter
LUX29_12480	COG4774	siderophore transport
LUX29_12490	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_12500	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_12505	COG1454	alcohol dehydrogenase
LUX29_12515	COG1620	l-lactate permease
LUX29_12520	COG1320	monovalent cation:proton antiporter activity
LUX29_12525	COG2212	antiporter activity
LUX29_12530	COG1863	multisubunit Na H antiporter MnhE subunit
LUX29_12535	COG0651	ATP synthesis coupled electron transport
LUX29_12540	COG1006	Multisubunit Na H antiporter MnhC subunit
LUX29_12545	COG2111	Na H antiporter
LUX29_12550	COG2111	Na H antiporter
LUX29_12550	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LUX29_12570	COG4589	Belongs to the CDS family
LUX29_12575	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LUX29_12580	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LUX29_12580	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LUX29_12590	COG0745	RESPONSE REGULATOR receiver
LUX29_12595	COG3920	Histidine kinase
LUX29_12620	COG0438	transferase activity, transferring glycosyl groups
LUX29_12625	COG0697	spore germination
LUX29_12630	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LUX29_12655	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_12660	COG1309	transcriptional regulator
LUX29_12665	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LUX29_12680	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
LUX29_12685	COG0402	S-adenosylhomocysteine deaminase activity
LUX29_12690	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
LUX29_12705	COG2199	diguanylate cyclase activity
LUX29_12720	COG3842	ATPase activity
LUX29_12730	COG1177	transmembrane transport
LUX29_12750	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_12755	COG0251	oxidation-reduction process
LUX29_12765	COG5383	Protein conserved in bacteria
LUX29_12770	COG0438	transferase activity, transferring glycosyl groups
LUX29_12790	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LUX29_12820	COG3962	Belongs to the TPP enzyme family
LUX29_12825	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LUX29_12835	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_12850	COG0673	inositol 2-dehydrogenase activity
LUX29_12860	COG2202	Pas domain
LUX29_12860	COG3920	Histidine kinase
LUX29_12875	COG4213	ABC transporter substrate-binding protein
LUX29_12880	COG4214	carbohydrate transport
LUX29_12885	COG1129	ABC transporter
LUX29_12895	COG2423	ornithine cyclodeaminase activity
LUX29_12900	COG3616	Alanine racemase, N-terminal domain
LUX29_12905	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LUX29_12910	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LUX29_12915	COG1414	Transcriptional regulator
LUX29_12930	COG2351	hydroxyisourate hydrolase activity
LUX29_12940	COG3257	ureidoglycine aminohydrolase activity
LUX29_12945	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
LUX29_12955	COG2233	PERMEase
LUX29_12960	COG0402	S-adenosylhomocysteine deaminase activity
LUX29_12970	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LUX29_12985	COG2252	PERMEase
LUX29_12995	COG0745	RESPONSE REGULATOR receiver
LUX29_13000	COG0784	Response regulator, receiver
LUX29_13000	COG2205	protein histidine kinase activity
LUX29_13010	COG4154	Belongs to the RbsD FucU family
LUX29_13030	COG0084	hydrolase, TatD family'
LUX29_13045	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LUX29_13050	COG1686	Belongs to the peptidase S11 family
LUX29_13060	COG1278	Cold shock
LUX29_13105	COG0784	Response regulator, receiver
LUX29_13110	COG3920	Histidine kinase
LUX29_13185	COG0582	viral genome integration into host DNA
LUX29_13190	COG0277	FAD linked oxidase domain protein
LUX29_13195	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_13225	COG1129	ABC transporter
LUX29_13230	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_13250	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LUX29_13270	COG0596	Alpha beta hydrolase
LUX29_13275	COG2207	Transcriptional regulator
LUX29_13295	COG1120	ATPase activity
LUX29_13330	COG0683	leucine binding
LUX29_13335	COG2198	Histidine kinase
LUX29_13335	COG0784	Response regulator, receiver
LUX29_13335	COG2205	protein histidine kinase activity
LUX29_13340	COG0745	RESPONSE REGULATOR receiver
LUX29_13360	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
LUX29_13365	COG4691	Plasmid stability protein
LUX29_13370	COG0477	Major facilitator Superfamily
LUX29_13450	COG4716	Myosin-crossreactive antigen
LUX29_13455	COG0028	Belongs to the TPP enzyme family
LUX29_13480	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_13490	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LUX29_13505	COG1346	cytolysis
LUX29_13510	COG1380	Effector of murein hydrolase LrgA
LUX29_13515	COG0583	DNA-binding transcription factor activity
LUX29_13545	COG1073	alpha beta
LUX29_13585	COG0667	Aldo Keto reductase
LUX29_13590	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
LUX29_13605	COG0667	Aldo Keto reductase
LUX29_13610	COG4221	oxidoreductase activity
LUX29_13620	COG0667	Aldo Keto reductase
LUX29_13625	COG0778	Nitroreductase
LUX29_13650	COG0659	secondary active sulfate transmembrane transporter activity
LUX29_13675	COG5489	Protein of unknown function (DUF736)
LUX29_13715	COG1192	Involved in chromosome partitioning
LUX29_13740	COG0741	lytic transglycosylase activity
LUX29_13750	COG2378	regulation of single-species biofilm formation
LUX29_13760	COG0583	DNA-binding transcription factor activity
LUX29_13770	COG0583	DNA-binding transcription factor activity
LUX29_13785	COG4962	Type ii secretion system protein e
LUX29_13800	COG3451	type IV secretory pathway VirB4
LUX29_13830	COG2948	multi-organism process
LUX29_13905	COG4626	Terminase
LUX29_13905	COG1802	Transcriptional regulator
LUX29_13955	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
LUX29_13970	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LUX29_13975	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LUX29_13980	COG2188	Transcriptional regulator
LUX29_13985	COG2971	BadF BadG BcrA BcrD
LUX29_13990	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
LUX29_14000	COG1175	transmembrane transport
LUX29_14010	COG0673	inositol 2-dehydrogenase activity
LUX29_14025	COG2910	NAD(P)H-binding
LUX29_14050	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_14060	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_14070	COG2186	Transcriptional regulator
LUX29_14085	COG0297	glycogen (starch) synthase activity
LUX29_14090	COG0438	transferase activity, transferring glycosyl groups
LUX29_14100	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LUX29_14120	COG0523	cobalamin synthesis protein
LUX29_14125	COG1802	Transcriptional regulator
LUX29_14135	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LUX29_14145	COG0434	BtpA family
LUX29_14150	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LUX29_14160	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_14210	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_14215	COG1802	Transcriptional regulator
LUX29_14230	COG1335	isochorismatase
LUX29_14235	COG3845	ABC transporter
LUX29_14245	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LUX29_14250	COG1079	Belongs to the binding-protein-dependent transport system permease family
LUX29_14265	COG2271	Major facilitator Superfamily
LUX29_14275	COG0165	Argininosuccinate lyase
LUX29_14280	COG2176	DNA-directed DNA polymerase activity
LUX29_14305	COG0625	glutathione transferase activity
LUX29_14315	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LUX29_14325	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LUX29_14330	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LUX29_14330	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LUX29_14350	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LUX29_14355	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LUX29_14385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_14390	COG2391	methyltransferase activity
LUX29_14395	COG3077	Addiction module antitoxin, RelB DinJ family
LUX29_14405	COG0477	Major facilitator Superfamily
LUX29_14410	COG0583	DNA-binding transcription factor activity
LUX29_14415	COG4948	Mandelate Racemase Muconate Lactonizing
LUX29_14425	COG0473	3-isopropylmalate dehydrogenase activity
LUX29_14435	COG2376	Dihydroxyacetone kinase
LUX29_14450	COG2376	Dihydroxyacetone kinase
LUX29_14465	COG1129	ABC transporter
LUX29_14500	COG1129	ABC transporter
LUX29_14505	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_14510	COG1879	ABC-type sugar transport system periplasmic component
LUX29_14515	COG1349	DNA-binding transcription factor activity
LUX29_14520	COG1070	Carbohydrate kinase
LUX29_14525	COG1349	DNA-binding transcription factor activity
LUX29_14530	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LUX29_14555	COG0191	fructose-bisphosphate aldolase activity
LUX29_14565	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LUX29_14585	COG1802	Transcriptional regulator
LUX29_14590	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_14625	COG1175	transmembrane transport
LUX29_14640	COG2188	Transcriptional regulator
LUX29_14645	COG3842	ATPase activity
LUX29_14650	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LUX29_14650	COG0475	glutathione-regulated potassium exporter activity
LUX29_14660	COG3845	ABC transporter
LUX29_14670	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LUX29_14675	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LUX29_14680	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LUX29_14690	COG1126	abc transporter atp-binding protein
LUX29_14695	COG0765	amino acid transport
LUX29_14700	COG0765	amino acid transport
LUX29_14705	COG2084	Dehydrogenase
LUX29_14710	COG0698	ribose 5-phosphate isomerase
LUX29_14725	COG1917	Cupin 2, conserved barrel domain protein
LUX29_14730	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LUX29_14740	COG1063	alcohol dehydrogenase
LUX29_14755	COG1473	amidohydrolase
LUX29_14760	COG0583	DNA-binding transcription factor activity
LUX29_14770	COG1012	belongs to the aldehyde dehydrogenase family
LUX29_14780	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LUX29_14780	COG0678	peroxiredoxin activity
LUX29_14785	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_14790	COG3956	TIGRFAM MazG family protein
LUX29_14795	COG1794	racemase activity, acting on amino acids and derivatives
LUX29_14810	COG0569	domain protein
LUX29_14815	COG2204	response regulator
LUX29_14820	COG5000	phosphorelay sensor kinase activity
LUX29_14825	COG2204	response regulator
LUX29_14830	COG3852	Histidine kinase
LUX29_14840	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LUX29_14840	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
LUX29_14850	COG2867	negative regulation of translational initiation
LUX29_14855	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LUX29_14865	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LUX29_14870	COG0508	dehydrogenase complex catalyzes the overall conversion of
LUX29_14875	COG0022	dehydrogenase e1 component
LUX29_14875	COG0508	dehydrogenase complex catalyzes the overall conversion of
LUX29_14880	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LUX29_14890	COG0148	phosphopyruvate hydratase activity
LUX29_14905	COG0504	CTP synthase activity
LUX29_14915	COG0149	triose-phosphate isomerase activity
LUX29_14920	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LUX29_14925	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LUX29_14930	COG0134	indole-3-glycerol-phosphate synthase activity
LUX29_14935	COG0315	cyclic pyranopterin monophosphate synthase activity
LUX29_14945	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LUX29_14960	COG0372	Belongs to the citrate synthase family
LUX29_14965	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LUX29_14975	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LUX29_14980	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LUX29_14985	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LUX29_14995	COG0750	zinc metalloprotease
LUX29_15005	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LUX29_15010	COG0233	cytoplasmic translational termination
LUX29_15015	COG0528	UMP kinase activity
LUX29_15020	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LUX29_15025	COG0052	Belongs to the universal ribosomal protein uS2 family
LUX29_15070	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LUX29_15080	COG1686	Belongs to the peptidase S11 family
LUX29_15120	COG2239	Acts as a magnesium transporter
LUX29_15130	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LUX29_15135	COG1024	Enoyl-CoA hydratase
LUX29_15140	COG2205	protein histidine kinase activity
LUX29_15140	COG2198	Histidine kinase
LUX29_15140	COG0784	Response regulator, receiver
LUX29_15160	COG0431	NADPH-dependent FMN reductase
LUX29_15170	COG2376	Dihydroxyacetone kinase
LUX29_15175	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_15180	COG1129	ABC transporter
LUX29_15185	COG1879	ABC-type sugar transport system periplasmic component
LUX29_15200	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_15205	COG0434	BtpA family
LUX29_15210	COG1349	DNA-binding transcription factor activity
LUX29_15235	COG1959	2 iron, 2 sulfur cluster binding
LUX29_15240	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
LUX29_15260	COG1183	phosphatidylcholine synthase activity
LUX29_15265	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LUX29_15280	COG4166	transmembrane transport
LUX29_15295	COG2151	metal-sulfur cluster biosynthetic enzyme
LUX29_15300	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LUX29_15305	COG0719	Fe-S assembly protein
LUX29_15310	COG0396	ATPase activity
LUX29_15315	COG0719	Fe-S assembly protein
LUX29_15325	COG2945	thiolester hydrolase activity
LUX29_15330	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LUX29_15340	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LUX29_15350	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LUX29_15355	COG0860	N-Acetylmuramoyl-L-alanine amidase
LUX29_15360	COG1530	ribonuclease E activity
LUX29_15365	COG0436	Aminotransferase
LUX29_15380	COG0511	ligase activity, forming carbon-carbon bonds
LUX29_15385	COG0439	Biotin carboxylase
LUX29_15390	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LUX29_15400	COG0322	excinuclease ABC activity
LUX29_15405	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LUX29_15415	COG0314	molybdopterin synthase activity
LUX29_15425	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LUX29_15430	COG1120	ATPase activity
LUX29_15435	COG0105	UTP biosynthetic process
LUX29_15445	COG0488	(ABC) transporter
LUX29_15455	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LUX29_15470	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LUX29_15480	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LUX29_15485	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LUX29_15490	COG0194	GDP metabolic process
LUX29_15495	COG1561	YicC-like family, N-terminal region
LUX29_15500	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LUX29_15505	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LUX29_15520	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LUX29_15525	COG0360	Binds together with S18 to 16S ribosomal RNA
LUX29_15530	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LUX29_15540	COG0359	binds to the 23S rRNA
LUX29_15550	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LUX29_15565	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LUX29_15570	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_15575	COG2326	polyphosphate kinase activity
LUX29_15580	COG1183	phosphatidylcholine synthase activity
LUX29_15585	COG0688	phosphatidylethanolamine metabolic process
LUX29_15590	COG5265	(ABC) transporter
LUX29_15600	COG2211	Major facilitator Superfamily
LUX29_15610	COG2308	Evidence 4 Homologs of previously reported genes of
LUX29_15630	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LUX29_15640	COG0697	spore germination
LUX29_15645	COG2814	Major facilitator Superfamily
LUX29_15650	COG0746	molybdenum cofactor guanylyltransferase activity
LUX29_15670	COG2084	Dehydrogenase
LUX29_15675	COG1522	sequence-specific DNA binding
LUX29_15685	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LUX29_15690	COG0415	Belongs to the DNA photolyase family
LUX29_15695	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LUX29_15700	COG2897	thiosulfate sulfurtransferase activity
LUX29_15710	COG0737	Belongs to the 5'-nucleotidase family
LUX29_15720	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LUX29_15725	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LUX29_15770	COG3267	Type II secretory pathway component ExeA
LUX29_15770	COG3409	Peptidoglycan-binding domain 1 protein
LUX29_15785	COG1596	polysaccharide export
LUX29_15815	COG1116	anion transmembrane transporter activity
LUX29_15820	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_15830	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LUX29_15865	COG0281	malic enzyme
LUX29_15865	COG0280	phosphate acetyltransferase
LUX29_15870	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
LUX29_15870	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LUX29_15885	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
LUX29_15905	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LUX29_15910	COG0546	phosphoglycolate phosphatase activity
LUX29_15935	COG0765	amino acid transport
LUX29_15940	COG0765	amino acid transport
LUX29_15945	COG1126	abc transporter atp-binding protein
LUX29_15950	COG0010	Belongs to the arginase family
LUX29_15955	COG3665	Urea carboxylase-associated protein
LUX29_16000	COG4221	oxidoreductase activity
LUX29_16005	COG3387	PFAM Glycoside hydrolase 15-related
LUX29_16025	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LUX29_16035	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_16045	COG0765	amino acid transport
LUX29_16055	COG0251	oxidation-reduction process
LUX29_16075	COG1126	abc transporter atp-binding protein
LUX29_16080	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_16085	COG0765	amino acid transport
LUX29_16090	COG0010	Belongs to the arginase family
LUX29_16095	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LUX29_16130	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_16135	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_16140	COG1129	ABC transporter
LUX29_16145	COG1879	ABC-type sugar transport system periplasmic component
LUX29_16150	COG1609	Transcriptional regulator
LUX29_16160	COG0673	inositol 2-dehydrogenase activity
LUX29_16180	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LUX29_16190	COG0277	FAD linked oxidase domain protein
LUX29_16200	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LUX29_16225	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LUX29_16240	COG3383	formate dehydrogenase (NAD+) activity
LUX29_16260	COG0583	DNA-binding transcription factor activity
LUX29_16265	COG0400	carboxylic ester hydrolase activity
LUX29_16270	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LUX29_16275	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LUX29_16280	COG0778	Nitroreductase
LUX29_16300	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LUX29_16305	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LUX29_16315	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LUX29_16325	COG3214	Protein conserved in bacteria
LUX29_16330	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LUX29_16335	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LUX29_16345	COG0302	gtp cyclohydrolase
LUX29_16350	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LUX29_16360	COG1879	ABC-type sugar transport system periplasmic component
LUX29_16365	COG1129	ABC transporter
LUX29_16370	COG1172	Belongs to the binding-protein-dependent transport system permease family
LUX29_16375	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_16380	COG1250	3-hydroxyacyl-CoA dehydrogenase
LUX29_16385	COG3246	L-lysine catabolic process to acetate
LUX29_16390	COG3386	PFAM SMP-30 Gluconolaconase
LUX29_16395	COG1752	Esterase of the alpha-beta hydrolase superfamily
LUX29_16400	COG2239	Acts as a magnesium transporter
LUX29_16425	COG0596	Alpha beta hydrolase
LUX29_16435	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LUX29_16445	COG0628	permease
LUX29_16450	COG1126	abc transporter atp-binding protein
LUX29_16455	COG0765	amino acid transport
LUX29_16460	COG4597	amino acid ABC transporter
LUX29_16465	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_16470	COG0626	cystathionine gamma-synthase activity
LUX29_16485	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LUX29_16490	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LUX29_16495	COG0010	Belongs to the arginase family
LUX29_16500	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LUX29_16505	COG1612	heme a metabolic process
LUX29_16535	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_16545	COG0765	amino acid transport
LUX29_16550	COG0765	amino acid transport
LUX29_16555	COG2721	sulfolactate sulfo-lyase activity
LUX29_16565	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_16570	COG4604	ABC transporter, ATP-binding protein
LUX29_16575	COG4605	iron ion homeostasis
LUX29_16580	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LUX29_16585	COG4607	ABC-type enterochelin transport system periplasmic component
LUX29_16590	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LUX29_16590	COG1648	precorrin-2 dehydrogenase activity
LUX29_16610	COG3938	Belongs to the proline racemase family
LUX29_16625	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
LUX29_16655	COG0321	lipoyl(octanoyl) transferase activity
LUX29_16660	COG1671	Belongs to the UPF0178 family
LUX29_16670	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LUX29_16680	COG0546	phosphoglycolate phosphatase activity
LUX29_16690	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LUX29_16695	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LUX29_16715	COG0203	ribosomal protein L17
LUX29_16720	COG0202	RNA polymerase activity
LUX29_16725	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LUX29_16730	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LUX29_16735	COG0563	adenylate kinase activity
LUX29_16740	COG0201	protein transport
LUX29_16745	COG0200	Binds to the 23S rRNA
LUX29_16750	COG1841	ribosomal large subunit assembly
LUX29_16755	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LUX29_16760	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LUX29_16775	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LUX29_16780	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LUX29_16785	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LUX29_16795	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LUX29_16805	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LUX29_16815	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LUX29_16820	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LUX29_16825	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LUX29_16835	COG0088	Forms part of the polypeptide exit tunnel
LUX29_16840	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LUX29_16850	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LUX29_16855	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LUX29_16860	COG0049	tRNA binding
LUX29_16865	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LUX29_16870	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LUX29_16875	COG0085	RNA polymerase activity
LUX29_16880	COG0222	ribosome binding
LUX29_16885	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LUX29_16890	COG0081	regulation of translation
LUX29_16895	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LUX29_16915	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LUX29_16930	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LUX29_16945	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LUX29_16950	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LUX29_16955	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LUX29_16990	COG0745	RESPONSE REGULATOR receiver
LUX29_17000	COG0604	alcohol dehydrogenase
LUX29_17060	COG5001	Diguanylate cyclase
LUX29_17075	COG0513	Belongs to the DEAD box helicase family
LUX29_17095	COG2194	sulfuric ester hydrolase activity
LUX29_17110	COG4953	penicillin-binding protein 1C
LUX29_17115	COG2373	Large extracellular alpha-helical protein
LUX29_17125	COG3773	Cell wall hydrolase
LUX29_17130	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LUX29_17145	COG0436	Aminotransferase
LUX29_17155	COG3243	poly(R)-hydroxyalkanoic acid synthase
LUX29_17160	COG0024	Methionine aminopeptidase
LUX29_17165	COG2003	Belongs to the UPF0758 family
LUX29_17200	COG0513	Belongs to the DEAD box helicase family
LUX29_17255	COG5425	PFAM Usg family protein
LUX29_17265	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
LUX29_17275	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LUX29_17285	COG3191	aminopeptidase activity
LUX29_17290	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LUX29_17300	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LUX29_17320	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LUX29_17325	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LUX29_17330	COG0047	phosphoribosylformylglycinamidine synthase activity
LUX29_17345	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LUX29_17355	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LUX29_17360	COG0483	inositol monophosphate 1-phosphatase activity
LUX29_17365	COG0037	tRNA processing
LUX29_17375	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LUX29_17390	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LUX29_17400	COG0538	isocitrate dehydrogenase activity
LUX29_17425	COG1959	2 iron, 2 sulfur cluster binding
LUX29_17460	COG1070	Carbohydrate kinase
LUX29_17470	COG1268	BioY protein
LUX29_17475	COG1122	ATPase activity
LUX29_17505	COG0215	cysteine-tRNA ligase activity
LUX29_17540	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LUX29_17550	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LUX29_17560	COG1381	Involved in DNA repair and RecF pathway recombination
LUX29_17565	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LUX29_17570	COG0571	ribonuclease III activity
LUX29_17575	COG0681	Belongs to the peptidase S26 family
LUX29_17590	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LUX29_17600	COG1758	RNA polymerase activity
LUX29_17610	COG1573	uracil-dna glycosylase
LUX29_17615	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LUX29_17620	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LUX29_17625	COG1196	nuclear chromosome segregation
LUX29_17625	COG0741	lytic transglycosylase activity
LUX29_17625	COG0739	heme binding
LUX29_17675	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LUX29_17685	COG1573	uracil-dna glycosylase
LUX29_17690	COG0477	Major facilitator Superfamily
LUX29_17700	COG0308	aminopeptidase N
LUX29_17705	COG2202	Pas domain
LUX29_17705	COG2205	protein histidine kinase activity
LUX29_17720	COG0745	RESPONSE REGULATOR receiver
LUX29_17725	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LUX29_17730	COG3088	subunit of a heme lyase
LUX29_17735	COG1138	Cytochrome C-type biogenesis protein
LUX29_17740	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LUX29_17745	COG4235	cytochrome complex assembly
LUX29_17885	COG2983	Belongs to the UPF0260 family
LUX29_17890	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LUX29_17930	COG2166	iron-sulfur cluster assembly
LUX29_17960	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LUX29_17965	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
LUX29_17970	COG2080	2 iron, 2 sulfur cluster binding
LUX29_17975	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LUX29_17980	COG0534	Mate efflux family protein
LUX29_17985	COG0246	Mannitol dehydrogenase
LUX29_17990	COG1063	alcohol dehydrogenase
LUX29_18035	COG0860	N-Acetylmuramoyl-L-alanine amidase
LUX29_18035	COG3409	Peptidoglycan-binding domain 1 protein
LUX29_18165	COG0328	RNA-DNA hybrid ribonuclease activity
LUX29_18190	COG0582	viral genome integration into host DNA
LUX29_18255	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LUX29_18290	COG3842	ATPase activity
LUX29_18295	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_18310	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LUX29_18315	COG1116	anion transmembrane transporter activity
LUX29_18320	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_18335	COG3842	ATPase activity
LUX29_18365	COG1609	Transcriptional regulator
LUX29_18370	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
LUX29_18400	COG0583	DNA-binding transcription factor activity
LUX29_18405	COG2814	Major facilitator Superfamily
LUX29_18415	COG1960	acyl-CoA dehydrogenase activity
LUX29_18430	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_18435	COG3842	ATPase activity
LUX29_18445	COG1178	ABC-type Fe3 transport system permease component
LUX29_18450	COG2186	Transcriptional regulator
LUX29_18470	COG0473	3-isopropylmalate dehydrogenase activity
LUX29_18480	COG0596	Alpha beta hydrolase
LUX29_18500	COG0697	spore germination
LUX29_18525	COG0482	sulfurtransferase activity
LUX29_18535	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LUX29_18550	COG0564	pseudouridine synthase activity
LUX29_18555	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LUX29_18580	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LUX29_18585	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LUX29_18590	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
LUX29_18600	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LUX29_18605	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LUX29_18610	COG0037	tRNA processing
LUX29_18620	COG2885	chlorophyll binding
LUX29_18625	COG0823	Involved in the tonB-independent uptake of proteins
LUX29_18645	COG0824	Thioesterase
LUX29_18650	COG2255	four-way junction helicase activity
LUX29_18655	COG0632	four-way junction helicase activity
LUX29_18660	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LUX29_18670	COG0217	transcriptional regulatory protein
LUX29_18675	COG1692	metallophosphoesterase
LUX29_18695	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LUX29_18715	COG0126	phosphoglycerate kinase activity
LUX29_18740	COG1201	RNA secondary structure unwinding
LUX29_18755	COG0730	response to heat
LUX29_18765	COG1960	acyl-CoA dehydrogenase activity
LUX29_18770	COG0183	Belongs to the thiolase family
LUX29_18775	COG1250	3-hydroxyacyl-CoA dehydrogenase
LUX29_18775	COG1024	Enoyl-CoA hydratase
LUX29_18795	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
LUX29_18810	COG1376	ErfK ybiS ycfS ynhG family protein
LUX29_18810	COG1388	LysM domain
LUX29_18835	COG1393	Belongs to the ArsC family
LUX29_18845	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LUX29_18850	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LUX29_18860	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LUX29_18865	COG1063	alcohol dehydrogenase
LUX29_18875	COG0784	Response regulator, receiver
LUX29_18905	COG3979	chitinase
LUX29_18910	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LUX29_18920	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LUX29_18925	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LUX29_18935	COG0440	acetolactate synthase activity
LUX29_18940	COG0028	Belongs to the TPP enzyme family
LUX29_18945	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LUX29_18960	COG0330	HflC and HflK could
LUX29_18965	COG0330	HflC and HflK could
LUX29_18970	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LUX29_18985	COG3754	Rhamnan synthesis protein F
LUX29_19015	COG2610	gluconate transmembrane transporter activity
LUX29_19020	COG4413	Urea transporter
LUX29_19025	COG0804	urea catabolic process
LUX29_19030	COG0832	Belongs to the urease beta subunit family
LUX29_19035	COG0831	urea catabolic process
LUX29_19040	COG0829	nickel cation binding
LUX29_19055	COG0830	nickel cation binding
LUX29_19060	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
LUX29_19065	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
LUX29_19080	COG3842	ATPase activity
LUX29_19095	COG0395	ABC-type sugar transport system, permease component
LUX29_19110	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LUX29_19115	COG0628	permease
LUX29_19125	COG0444	Belongs to the ABC transporter superfamily
LUX29_19135	COG0747	negative chemotaxis
LUX29_19140	COG1960	acyl-CoA dehydrogenase activity
LUX29_19150	COG1403	HNH endonuclease
LUX29_19155	COG0745	RESPONSE REGULATOR receiver
LUX29_19160	COG0704	Plays a role in the regulation of phosphate uptake
LUX29_19165	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LUX29_19175	COG0573	inorganic phosphate transmembrane transporter activity
LUX29_19185	COG5002	protein histidine kinase activity
LUX29_19195	COG3387	PFAM Glycoside hydrolase 15-related
LUX29_19220	COG0254	rRNA binding
LUX29_19225	COG1132	(ABC) transporter
LUX29_19240	COG1174	glycine betaine transport
LUX29_19245	COG1125	glycine betaine transport
LUX29_19250	COG1174	glycine betaine transport
LUX29_19255	COG1732	Glycine betaine
LUX29_19275	COG0601	transmembrane transport
LUX29_19280	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_19285	COG0444	Belongs to the ABC transporter superfamily
LUX29_19290	COG1124	(ABC) transporter
LUX29_19295	COG2197	response regulator
LUX29_19330	COG0714	Associated with various cellular activities
LUX29_19370	COG1473	amidohydrolase
LUX29_19380	COG0156	8-amino-7-oxononanoate synthase activity
LUX29_19385	COG1063	alcohol dehydrogenase
LUX29_19395	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LUX29_19410	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_19415	COG3842	ATPase activity
LUX29_19420	COG1840	ABC-type Fe3 transport system, periplasmic component
LUX29_19450	COG2259	Doxx family
LUX29_19455	COG0583	DNA-binding transcription factor activity
LUX29_19460	COG2514	catechol 2,3-dioxygenase activity
LUX29_19470	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LUX29_19475	COG4208	sulfate ABC transporter
LUX29_19515	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LUX29_19520	COG1396	sequence-specific DNA binding
LUX29_19520	COG1917	Cupin 2, conserved barrel domain protein
LUX29_19530	COG3842	ATPase activity
LUX29_19535	COG1176	ABC-type spermidine putrescine transport system, permease component I
LUX29_19545	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LUX29_19550	COG4191	Histidine kinase
LUX29_19550	COG0784	Response regulator, receiver
LUX29_19565	COG4214	carbohydrate transport
LUX29_19570	COG1129	ABC transporter
LUX29_19575	COG4213	ABC transporter substrate-binding protein
LUX29_19580	COG0800	Aldolase
LUX29_19585	COG3734	2-keto-3-deoxy-galactonokinase
LUX29_19590	COG3386	PFAM SMP-30 Gluconolaconase
LUX29_19595	COG0129	dihydroxy-acid dehydratase activity
LUX29_19610	COG2186	Transcriptional regulator
LUX29_19645	COG0617	tRNA 3'-terminal CCA addition
LUX29_19660	COG0714	Associated with various cellular activities
LUX29_19690	COG0435	Glutathione S-transferase
LUX29_19695	COG0494	nUDIX hydrolase
LUX29_19705	COG3135	benzoate transporter
LUX29_19715	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LUX29_19725	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LUX29_19725	COG0512	Glutamine amidotransferase of anthranilate synthase
LUX29_19730	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LUX29_19735	COG4176	ABC-type proline glycine betaine transport system permease component
LUX29_19740	COG4175	Glycine betaine
LUX29_19760	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LUX29_19770	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
LUX29_19775	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LUX29_19785	COG0295	cytidine deaminase activity
LUX29_19795	COG2900	Belongs to the SlyX family
LUX29_19800	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LUX29_19850	COG2948	multi-organism process
LUX29_19880	COG3451	type IV secretory pathway VirB4
LUX29_19895	COG4962	Type ii secretion system protein e
LUX29_19925	COG2223	nitrite transmembrane transporter activity
LUX29_19940	COG0583	DNA-binding transcription factor activity
LUX29_19950	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_19975	COG0583	DNA-binding transcription factor activity
LUX29_20005	COG0741	lytic transglycosylase activity
LUX29_20030	COG1192	Involved in chromosome partitioning
LUX29_20065	COG5489	Protein of unknown function (DUF736)
LUX29_20100	COG1002	Type II restriction enzyme, methylase subunits
LUX29_20115	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LUX29_20120	COG1061	Type III restriction enzyme res subunit
LUX29_20125	COG1002	Type II restriction enzyme, methylase subunits
LUX29_20140	COG0671	phosphoesterase, PA-phosphatase related
LUX29_20160	COG1126	abc transporter atp-binding protein
LUX29_20175	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_20180	COG0446	pyridine nucleotide-disulphide oxidoreductase
LUX29_20180	COG1902	pentaerythritol trinitrate reductase activity
LUX29_20205	COG0583	DNA-binding transcription factor activity
LUX29_20210	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LUX29_20230	COG1742	UPF0060 membrane protein
LUX29_20240	COG3422	double-strand break repair
LUX29_20245	COG2186	Transcriptional regulator
LUX29_20280	COG0739	heme binding
LUX29_20285	COG0667	Aldo Keto reductase
LUX29_20295	COG1376	ErfK ybiS ycfS ynhG family protein
LUX29_20305	COG0656	L-ascorbic acid biosynthetic process
LUX29_20315	COG0542	response to heat
LUX29_20325	COG2890	protein-(glutamine-N5) methyltransferase activity
LUX29_20330	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LUX29_20335	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LUX29_20340	COG0527	aspartate kinase activity
LUX29_20345	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LUX29_20355	COG4581	dead DEAH box helicase
LUX29_20365	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
LUX29_20385	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
LUX29_20440	COG0463	Glycosyl transferase, family 2
LUX29_20585	COG1278	Cold shock
LUX29_20610	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LUX29_20615	COG1733	regulation of RNA biosynthetic process
LUX29_20620	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_20630	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LUX29_20645	COG1176	ABC-type spermidine putrescine transport system, permease component I
LUX29_20650	COG3842	ATPase activity
LUX29_20660	COG0583	DNA-binding transcription factor activity
LUX29_20675	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LUX29_20680	COG3706	GGDEF domain
LUX29_20700	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
LUX29_20740	COG1346	cytolysis
LUX29_20770	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
LUX29_20775	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LUX29_20780	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LUX29_20785	COG0142	geranyltranstransferase activity
LUX29_20810	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
LUX29_20820	COG1640	4-alpha-glucanotransferase
LUX29_20830	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LUX29_20855	COG0481	GTPase activity
LUX29_20860	COG0443	Heat shock 70 kDa protein
LUX29_20875	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_20885	COG0483	inositol monophosphate 1-phosphatase activity
LUX29_20900	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LUX29_20905	COG2894	cell division
LUX29_20910	COG0850	regulation of cytokinetic process
LUX29_20925	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LUX29_20930	COG0363	glucosamine-6-phosphate deaminase activity
LUX29_20935	COG0129	dihydroxy-acid dehydratase activity
LUX29_20950	COG0583	DNA-binding transcription factor activity
LUX29_20965	COG0395	ABC-type sugar transport system, permease component
LUX29_20970	COG3842	ATPase activity
LUX29_20975	COG0402	S-adenosylhomocysteine deaminase activity
LUX29_20990	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LUX29_21005	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LUX29_21015	COG0594	ribonuclease P activity
LUX29_21020	COG0230	Belongs to the bacterial ribosomal protein bL34 family
LUX29_21025	COG3852	Histidine kinase
LUX29_21065	COG2948	multi-organism process
LUX29_21080	COG3846	protein secretion by the type IV secretion system
LUX29_21095	COG3451	type IV secretory pathway VirB4
LUX29_21110	COG4962	Type ii secretion system protein e
LUX29_21135	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LUX29_21155	COG0741	lytic transglycosylase activity
LUX29_21200	COG5489	Protein of unknown function (DUF736)
LUX29_21270	COG0583	DNA-binding transcription factor activity
LUX29_21275	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_21280	COG0583	DNA-binding transcription factor activity
LUX29_21285	COG0655	NAD(P)H dehydrogenase (quinone) activity
LUX29_21295	COG0803	Belongs to the bacterial solute-binding protein 9 family
LUX29_21300	COG3443	Belongs to the bacterial solute-binding protein 9 family
LUX29_21305	COG0287	Prephenate dehydrogenase
LUX29_21310	COG0673	inositol 2-dehydrogenase activity
LUX29_21340	COG2186	Transcriptional regulator
LUX29_21345	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LUX29_21365	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LUX29_21370	COG1116	anion transmembrane transporter activity
LUX29_21375	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LUX29_21385	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LUX29_21395	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_21410	COG0028	Belongs to the TPP enzyme family
LUX29_21550	COG3311	Transcriptional regulator
LUX29_21595	COG3920	Histidine kinase
LUX29_21595	COG2202	Pas domain
LUX29_21600	COG4191	Histidine kinase
LUX29_21600	COG0784	Response regulator, receiver
LUX29_21615	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LUX29_21620	COG0489	protein tyrosine kinase activity
LUX29_21620	COG3206	protein involved in exopolysaccharide biosynthesis
LUX29_21625	COG1215	transferase activity, transferring glycosyl groups
LUX29_21630	COG1215	transferase activity, transferring glycosyl groups
LUX29_21635	COG1215	transferase activity, transferring glycosyl groups
LUX29_21640	COG0438	transferase activity, transferring glycosyl groups
LUX29_21645	COG2273	Hydrolase Family 16
LUX29_21655	COG0463	Glycosyl transferase, family 2
LUX29_21660	COG1215	transferase activity, transferring glycosyl groups
LUX29_21670	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LUX29_21675	COG1596	polysaccharide export
LUX29_21685	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
LUX29_21690	COG0247	lactate metabolic process
LUX29_21695	COG1139	Iron-sulfur cluster binding protein
LUX29_21710	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LUX29_21710	COG0512	Glutamine amidotransferase of anthranilate synthase
LUX29_21715	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LUX29_21730	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
LUX29_21740	COG2943	transferase activity, transferring hexosyl groups
LUX29_21755	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LUX29_21760	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
LUX29_21765	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
LUX29_21780	COG2099	Precorrin-6x reductase
LUX29_21785	COG2875	Belongs to the precorrin methyltransferase family
LUX29_21815	COG1492	cobalamin metabolic process
LUX29_21825	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_21860	COG1120	ATPase activity
LUX29_21865	COG1252	NADH dehydrogenase
LUX29_21875	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_21880	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LUX29_21890	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LUX29_21895	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LUX29_21900	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LUX29_21905	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LUX29_21910	COG0792	nuclease activity
LUX29_21915	COG0189	ligase activity
LUX29_21925	COG0606	chelatase, subunit chli
LUX29_21930	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LUX29_21955	COG0588	phosphoglycerate mutase activity
LUX29_21965	COG1132	(ABC) transporter
LUX29_21970	COG0837	glucose binding
LUX29_21975	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
LUX29_21990	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LUX29_21995	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LUX29_22000	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LUX29_22005	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LUX29_22010	COG0596	Alpha beta hydrolase
LUX29_22020	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
LUX29_22025	COG0424	maF-like protein
LUX29_22030	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LUX29_22035	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LUX29_22065	COG1131	(ABC) transporter
LUX29_22070	COG0842	Transport permease protein
LUX29_22075	COG4770	biotin carboxylase activity
LUX29_22080	COG1999	signal sequence binding
LUX29_22085	COG4166	transmembrane transport
LUX29_22090	COG0601	transmembrane transport
LUX29_22095	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LUX29_22100	COG4608	Belongs to the ABC transporter superfamily
LUX29_22110	COG0154	amidase activity
LUX29_22115	COG0444	Belongs to the ABC transporter superfamily
LUX29_22130	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LUX29_22155	COG2226	methyltransferase
LUX29_22160	COG0756	dUTP diphosphatase activity
LUX29_22165	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LUX29_22170	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LUX29_22175	COG2226	methyltransferase
LUX29_22180	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
LUX29_22185	COG0268	Binds directly to 16S ribosomal RNA
LUX29_22190	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LUX29_22195	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LUX29_22200	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LUX29_22205	COG4988	ABC transporter
LUX29_22210	COG4988	ABC transporter
LUX29_22215	COG1271	oxidase subunit
LUX29_22220	COG1294	oxidase, subunit
LUX29_22230	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LUX29_22260	COG1609	Transcriptional regulator
LUX29_22265	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LUX29_22270	COG1028	Short-chain dehydrogenase reductase Sdr
LUX29_22275	COG3842	ATPase activity
LUX29_22285	COG1175	transmembrane transport
LUX29_22290	COG0395	ABC-type sugar transport system, permease component
LUX29_22295	COG1522	sequence-specific DNA binding
LUX29_22300	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LUX29_22305	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LUX29_22310	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
LUX29_22315	COG2205	protein histidine kinase activity
LUX29_22320	COG3178	'Phosphotransferase
LUX29_22335	COG1074	ATP-dependent DNA helicase activity
LUX29_22345	COG4993	Dehydrogenase
LUX29_22355	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction