LOCUS NPHTNTED 7510 bp DNA linear VRL 15-FEB-2018 DEFINITION Trichoplusia ni TED virus strain mutant FP-D ORF A, ORF B, and ORF C genes, complete cds. ACCESSION M32662 VERSION M32662.1 KEYWORDS transposon. SOURCE Trichoplusia ni TED virus ORGANISM Trichoplusia ni TED virus Viruses; Retro-transcribing viruses; Metaviridae; Errantivirus. REFERENCE 1 (bases 1 to 7510) AUTHORS Friesen,P.D. and Nissen,M.S. TITLE Gene organization and transcription of TED, a lepidopteran retrotransposon integrated within the baculovirus genome JOURNAL Mol. Cell. Biol. 10 (6), 3067-3077 (1990) PUBMED 1692964 COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by P.D.Friesen, 07-MAR-1990. The transposon TED is a transposable element from the moth Trichoplusia ni which was found within the baculovirus AcMNPV genome. FEATURES Location/Qualifiers source 1..7510 /organism="Trichoplusia ni TED virus" /mol_type="genomic DNA" /strain="mutant FP-D" /host="Trichoplusia ni" /db_xref="taxon:2083181" repeat_region 1..273 /rpt_type=long_terminal_repeat misc_binding 274..290 /note="tRNA primer binding site" /bound_moiety="tRNA primer" CDS 663..1895 /codon_start=1 /product="ORF A" /protein_id="AAA92248.1" /translation="MPHDPDVIFKALRLVPEFNGNPNILTRFINICDKLVEQYASAEP GSELGNLCLLNGILNKVTGTAASTINANGIPETWVGIRSSLINNFSDQRDETALYNDL SLASQGNKTPQEFYEQCQTLFSTIMTYVTLHETLPTTIEAKRALYKKVTVQAFVRGLK EPLGSRIRCMRPETIEKALEYVQEELNVIYLQQRNESSRAHSSPKMLPIPQQSPVTPF NTLGIHRPPVPNWPVPMGQRGNQPPPQPFKFNVPNQYHNRMPTKTQQMLRAPPPNYHP QSNVFRLPPRNPPPNQIVKPMSGVQHFVPKTLPVMTGHDWRKSGNPPPNNYFKTRELN VNEFYSSDDSYNSVDYYSEPGCDYYTDYYNNPYDYDTNATCYDLPYDASETEAQPGPS HVHESQDFQSTKPSNEQG" CDS 2306..5560 /codon_start=1 /product="ORF B" /protein_id="AAA92249.1" /translation="MIPARSSKLVRIPINATDGEVLVEEQMFCNCIVHECVTMVKDGR GYVELENPTPNDVIFYLDQPASAELFNIKCTQVEQSQRVDDVLSRLRTDHLNEEEKAN LLRLCSRYSDVFYIDGEALTFTNKIKHRIRTTDEVPVYTKSYRYPFIHRQEVRDQITK MLDQGIIRPSDSAWSSPIWVVPKKIDASGKQKWRLVVDFRKLNEKTIDDKYPIPNISD VLDKLGKCQYFTTLDLASGFYQVEMDPQDISKTAFNVEHGHFEFLRMPMGLKNSPSTF QRVMDNVLRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRLRESNFKIQMDKSEF LKLETAYLGHIISRDGIKPNPDKISAIQKYLIPKTPKEIKQFLGLLGYYRKFIPDFAR LTKPLTQCLKKGSKVTLSPEYVNAFEHCKTLLTNDPILQYPDFTREFNLTTDASNFAI GAVLSQGPIGSDKPVCYASRTLNESELNYSTIEKELLAIVWATKYFRPYLFGRKFKIL TDHKPLQWMMNLKDPNSRMTRWRLRLSEYDFSVVYKKGKSNTNADALSRVEIHTTEID EIDSVIENIKELSSMINNPSETSRPQRQTENTDEIRQNSTTDTVHTSDEHPILEVPIT NEPLNRFHRQIHLTVVGDIKRRPIVTKPFESHTRIAIQLSESNLEQDVISAIKEYVNP KVKTALIINPPLKMYSIIPIIQKTFRSSSLNLVLTKVELENVKEYLRQQDIIRHYHDG KTNHRGINECYLALSKRYYWPRMKDQITKFINECTICGQAKYDRNPIRPQFNIVPPAT KPLETVHMDLFTVQNEKYITFIDVFTKYGQAYHLRDGTAISILQALLRFCTHHGLPIT IVTDNGTEFSNQLFSEFVRIHKIIHHKTLPHSPSDNGNIERFHSTILEHIRILKLQHK DEPIVNLMPYAIIGYNSSIHSFTKCRPFDLLNGHFDPRDPLDIDLTEHILQQYAQNHR QQMKQVYEIINETSLANRTALIESRNKTRESEVEYIPQQQVFIKNPLASRQKVAPRYT QDTVLADLPIHIYTSKKRGPVAKARLKRVPKGNTLLQDSAATDNTCDASSRDKT" CDS 5985..7223 /codon_start=1 /product="ORF C" /protein_id="AAA92250.1" /translation="MSQHNKVLEQLTLNQIRVNATLELLLQKEAYRDYSLIKFAKFAQ ILGIITNNVEDLMLEIIRLENMMAFIRASSTHHSMIDIEALQSMIDRLKSLYTPNQIL NLELREYYSLIKPGSYFIDKRIVIVYNFPIVSQDTYDLYKLSIVPNKRQLALIPSSPY IATDEKSFVYIEAECPKYSSTYLCEKKTGQQIQSKPDCIQKLIVHQSLENTCQFTKIS LIKEAVEKLDDQHYVLSLPEPTKVQLACGRKDFNTLQGSYLVTIPMGCYLQTPELTII NDDNAIKGQPLKLAKIPYDEMNLTAVSTHINFSSIDLEDLHSIQTKFMLGKPIDIEEI QPTALYHTTIPLYVILLGAILFFTLRLIRKYKCWRLKSEDKEKQSSLEIHTYEDVKKN TRKRDDFPATFSLNMVKNSC" repeat_region 7238..7510 /rpt_type=long_terminal_repeat regulatory 7446..7451 /regulatory_class="polyA_signal_sequence" ORIGIN 1 tgttaggtat ggagccttaa tggatatcat cgacgctgca tttcctgtta ttgtccgcca 61 gctgcataga aactgtctga atgacgtaaa tcgtcatgaa ccgctgatgt agcgaaattt 121 gtaattagtt attaactcaa aattgtatgc attcctattt ctaatatcga gtaggtctca 181 cgcattaatt attgtaattc ttataagtaa taaattagca tttaaaatca tttttggttt 241 tttttctatc tgccgtctgc agtatacgta attggcgcag tcggtaggat actcgcgggc 301 cggttcgcga gcaatagagt catctcatat cgatattcgc gttcgcgagt cgcccgggcg 361 gctttcaagc cacatcctga gtatcctgaa tctacgggac aactgcggag ccaggcggag 421 aatccagaca tcgattcgca gagaaagaac caatatgaaa cttatgtaag tacacttgaa 481 tcgttctcgt gttgcttcct ttctattcct agttacttta atctctaaaa atttttcgtc 541 acgaaaagtt ttacacccgg gaacctgcat cacgccaggc tcgccggaat atcattgata 601 ttaatagaga cttagataat tcagatttaa acttaggttt agatagatta tttagtataa 661 aaatgccaca cgatcctgac gtaattttca aggctttgcg acttgtgccg gaatttaatg 721 gcaaccccaa tattttaacg agatttataa atatatgtga taaactagta gagcaatatg 781 cgagcgctga gccgggaagt gagttaggaa atttatgttt gttaaatggc atcttgaaca 841 aggtcactgg aacagctgcc tctaccataa acgcaaatgg cattcctgaa acctgggtag 901 gcattagatc atctttaatt aacaactttt cagaccagcg cgatgaaacg gctttatata 961 atgacctctc attagcttca caaggtaata agactcctca ggagttctac gaacaatgcc 1021 aaaccttatt cagtaccata atgacgtatg taacgttgca tgagacttta ccaacgacta 1081 tcgaagctaa acgggcactt tacaagaaag taactgtgca ggcttttgtg cggggactaa 1141 aagaaccttt aggttcacgt ataaggtgta tgcgccccga gactatcgag aaagcccttg 1201 aatatgtgca ggaagagcta aatgtaatat atctgcagca acgcaatgag tcttcgaggg 1261 ctcacagctc tcctaaaatg cttcctatac cgcaacagtc tcctgtgacc ccattcaata 1321 cattaggtat tcacagaccg ccggtaccta actggccggt tccgatggga caacgtggca 1381 atcaaccacc acctcaaccc tttaaattta atgtgcctaa ccaatatcat aatcgcatgc 1441 ctactaaaac tcaacagatg cttagagcac cgccaccaaa ttatcatcct cagagtaacg 1501 ttttccgctt accaccacgt aatccaccac caaatcaaat tgtaaaaccg atgagtggag 1561 ttcaacattt tgtcccaaaa actttacctg taatgacggg acatgactgg cgtaaatccg 1621 ggaatccgcc gccaaataat tacttcaaaa ctcgcgaatt aaacgttaac gaattctact 1681 cgtctgacga ctcatataac tcagtcgact attattccga accagggtgc gactattata 1741 ctgactatta taacaacccc tatgactatg acacaaacgc gacctgttac gacttacctt 1801 acgacgctag tgagacagaa gctcaaccag gccctagcca tgtacatgaa agtcaggatt 1861 ttcaatcgac caaaccatca aacgaacaag gatagatatt aacctacagt accaaagaca 1921 actaccatat atagaatttt ctgatccacc attaaaattc ttgattgaca ctggtgccaa 1981 tcaatcattt attagccccc aagccgtcca aaaatacttt tccaattact cggtgaatta 2041 cgacccattt gaaataacga acatacacgg tgtcagtaga aatgagcact caattacatt 2101 accatgtttc caggagttta acgaaaccca agatattaaa ttatttatat accattttca 2161 tgattatttc gatggattaa taggactaga tttattgtct aaatgggagg ccaagataga 2221 tttaaaagac tttttactaa taactaaatt tgcaactaac cgcattaagc tatataactc 2281 tcgtaatgtc aacctgtacg aggatatgat acctgcaaga agttctaagt tagtaaggat 2341 acctattaac gctacggatg gcgaagtttt agtagaagaa caaatgtttt gcaactgcat 2401 tgtccatgaa tgcgttacca tggtaaaaga tggccgtgga tatgtagaat tagagaatcc 2461 aacccctaat gatgtaattt tttacctgga tcagccagct tctgccgaat tattcaatat 2521 caagtgcaca caagttgaac agtcacaacg tgtagacgat gttttatcac gattgcgtac 2581 agaccatctc aatgaggagg aaaaagctaa ccttttaaga ctttgctctc gatattcaga 2641 tgtattttac attgacgggg aagcccttac attcactaat aaaattaaac accgtataag 2701 aacaacggac gaagtacccg tgtacaccaa aagttaccgg taccccttca tccatcgcca 2761 ggaagttagg gaccaaatca cgaaaatgtt ggaccaagga attataagac catcagactc 2821 tgcatggagc tcacccatat gggttgtgcc caagaaaatc gacgcttctg ggaaacaaaa 2881 gtggcgtctc gtagttgact tccgtaagtt gaacgagaag actatcgatg acaaataccc 2941 gataccaaac ataagtgacg tacttgacaa gttaggtaag tgccaatact tcaccacctt 3001 agatttggca agtgggtttt atcaggtgga gatggaccct caagatatat cgaaaaccgc 3061 gtttaacgta gaacacgggc attttgaatt ccttcgaatg cctatgggat taaaaaactc 3121 accatctact tttcaaagag ttatggacaa tgtcctaaga ggtctccaaa ataacatctg 3181 tctcgtctac cttgacgata ttattgtcta tagtacttcc ctacaggaac acctggagaa 3241 cctggaacga gttttccaaa gacttagaga aagtaacttc aaaattcaaa tggacaagtc 3301 cgaattcttg aagctcgaaa ctgcttatct tggtcacatc ataagcaggg acggtatcaa 3361 gcctaaccct gataagattt ccgctattca aaaatatctg attccaaaga cccctaagga 3421 aataaaacaa tttttaggcc ttctcggtta ttaccgaaaa ttcattccag attttgcacg 3481 actcacaaaa ccccttacac agtgcttaaa aaaaggtagt aaagtaactc ttagtcccga 3541 atatgtaaat gcttttgaac actgtaaaac tctgttaacc aacgacccaa tattacaata 3601 cccagacttt accagagaat ttaacctcac gacagacgct tctaacttcg ctattggagc 3661 ggtactatcc caaggaccaa taggatccga caaacccgtc tgttacgctt ctcgaacact 3721 caatgagagc gaactaaact atagcacaat agagaaagaa ttactggcta tagtttgggc 3781 tacaaaatat tttagaccct acttattcgg tagaaaattt aagatattga ctgaccacaa 3841 accactacag tggatgatga acttaaaaga cccaaactca cgaatgacta gatggcgact 3901 acgactaagt gaatatgact tctctgtagt gtacaagaaa ggaaagtcta ataccaacgc 3961 tgatgccctt tctcgtgttg agatccatac cacggaaata gacgaaattg actcagtaat 4021 agaaaacatt aaagaactta gctcaatgat taataacccc tccgagacat ctcgacctca 4081 aagacaaacc gaaaacacag acgaaatcag acagaactcg acaaccgaca ctgtacatac 4141 tagtgatgaa caccctattc tggaagtgcc cattacaaac gaaccactca acagatttca 4201 tagacagatt catcttaccg tagtaggaga cataaaacga cgacctattg tgacaaaacc 4261 tttcgaaagt catacccgaa tagcaatcca actatcagag tcaaacttag aacaagatgt 4321 tataagtgcc atcaaagaat acgttaaccc aaaagtcaaa acagccctga tcataaatcc 4381 gcccttaaag atgtattcta ttatccctat tatacaaaag acgttcagaa gttcatccct 4441 taacttagtg ttaaccaaag tcgaacttga aaatgtcaaa gagtatctta gacaacaaga 4501 cattatacga cattaccatg acggaaagac aaaccaccgg ggaataaatg aatgctacct 4561 agcactctca aaaaggtatt actggcccag gatgaaagat caaatcacta aatttatcaa 4621 tgagtgtact atctgtggtc aagccaaata tgacaggaac ccaatacgac ctcagtttaa 4681 tattgtaccc ccagctacga aacctctaga gaccgttcat atggacctat ttacagttca 4741 aaatgagaaa tatataacgt tcattgacgt atttacgaag tacggtcagg cataccacct 4801 acgtgatggc accgctatta gtattttaca ggcattgtta cgattttgca ctcatcacgg 4861 attacccata accatagtta ctgataacgg caccgaattt tccaatcaat tattctctga 4921 attcgtacgt attcataaga taattcatca taagacctta ccccacagcc cgagcgataa 4981 cggaaatatt gaacgtttcc attccacaat tcttgagcat attcgaattc taaaactaca 5041 acataaggat gaaccaattg ttaaccttat gccatacgct atcataggct acaatagttc 5101 catacatagt ttcaccaaat gcagaccttt cgatctacta aatggacact ttgatccaag 5161 ggacccgctt gacatagacc taaccgaaca cattctgcag caatatgctc agaatcatcg 5221 tcaacagatg aaacaagtct acgaaattat caatgaaaca tctcttgcta atcgtacggc 5281 tttaatagaa agtagaaaca aaacgcgcga atctgaagta gaatacatcc ctcagcagca 5341 agtattcatt aaaaaccctc tcgccagccg tcagaaggta gcaccacgct atacccagga 5401 tacggtctta gcagatctgc ccatacacat ctatacgtct aaaaaacgtg ggcccgtagc 5461 taaagcgcga ctaaaacgtg ttcctaaagg taacacattg ttacaggact ctgctgctac 5521 tgacaataca tgcgacgcat cctcaagaga taagacttga gaccctagct gatggacccg 5581 gactattacc atacaaactg ggaccgacac gactaaccat acactatcat tcctttatac 5641 aacccattga cctcaacgat attgaaaata aaatcgactc tgtacagact caacttaata 5701 catttaggac taaactcgat aacgaaactt acctactcta tgaatatcaa attgattatc 5761 ttactaataa ggttggcaaa ttactacacc aaattaaatc tttagaacct gttagagtta 5821 aaagaggtct tatagatggc ctagggtcta tagtaaaaag tgtcactggc aacttagact 5881 accaagatgc ccttaaatac gacgaggctc ttaaaacctt acagaccaac gaaggcaaat 5941 taacatcaga atttaatagc catctgagtc tttgcaaaga gtggatgtcc caacacaata 6001 aagtgttaga acaactaact ttaaatcaaa taagagttaa tgccacttta gaactactat 6061 tacaaaaaga agcttatagg gactatagct taattaaatt tgcgaaattc gcacaaatct 6121 taggaattat aacaaacaac gtagaagatt taatgttaga aataatcaga ttagaaaata 6181 tgatggcttt tatacgcgca tctagtactc atcattccat gattgatata gaggccttgc 6241 agtcaatgat agatagatta aaatcccttt atactccaaa tcaaattcta aatttagaac 6301 ttagggaata ttacagctta atcaagccag gatcttattt catcgataaa cgtatagtaa 6361 tagtatataa ttttccaatt gtttcccaag atacatatga cctatacaaa ctatccattg 6421 tacccaacaa aagacaactt gcccttattc cttcctctcc ttatatagca acagatgaga 6481 aatcgttcgt gtacatagag gctgaatgcc cgaagtatag cagtacttat ctctgcgaaa 6541 agaagaccgg ccagcagatc cagtcgaaac ctgattgtat tcagaaactc atcgttcatc 6601 agagtctaga gaatacttgt caattcacga agatatctct catcaaggaa gcagtagaaa 6661 aattagacga ccaacattac gtgctgtctc tacccgaacc taccaaagtt cagttggcat 6721 gtgggagaaa ggacttcaac acacttcaag gaagctacct cgtaaccatc cctatgggtt 6781 gctatctaca gactccagaa ttaactataa taaacgatga caacgcgata aagggtcaac 6841 cattgaaact agcgaagata ccatacgatg aaatgaatct gactgccgtc tctacccaca 6901 tcaatttcag ctcgatcgat ctggaagact tacacagcat ccaaactaaa ttcatgttgg 6961 gaaaacctat tgacatcgag gagattcaac caactgccct gtaccacaca accatcccac 7021 tatacgtcat attactgggc gcaatcctat ttttcactct gagattaatt cgcaaataca 7081 aatgttggag actaaaatca gaagataaag aaaagcagtc atctcttgag atacatacat 7141 acgaagacgt caagaaaaat accagaaaac gagatgactt tccagcaaca ttttctctta 7201 atatggtcaa aaatagttgc tgatctatgg gtggaggtgt taggtatgga gccttaatgg 7261 atatcatcga cgctgcattt cctgttattg tccgccagct gcatagaaac tgtctgaatg 7321 acgtaaatcg tcatgaaccg ctgatgtagc gaaatttgta attagttatt aactcaaaat 7381 tgtatgcatt cctatttcta atatcgagta ggtctcacgc attaattatt gtaattctta 7441 taagtaataa attagcattt aaaatcattt ttggtttttt ttctatctgc cgtctgcagt 7501 atacgtaatt //