locus-tag	class	description
HHJ56_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
HHJ56_00010	COG0592	DNA-directed DNA polymerase activity
HHJ56_00020	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
HHJ56_00025	COG1381	Involved in DNA repair and RecF pathway recombination
HHJ56_00030	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
HHJ56_00035	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
HHJ56_00040	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
HHJ56_00045	COG0252	asparaginase activity
HHJ56_00055	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
HHJ56_00075	COG3133	Outer membrane lipoprotein
HHJ56_00080	COG3962	Belongs to the TPP enzyme family
HHJ56_00090	COG0673	inositol 2-dehydrogenase activity
HHJ56_00100	COG0431	NADPH-dependent FMN reductase
HHJ56_00110	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
HHJ56_00120	COG3306	glycosyltransferase involved in LPS biosynthesis
HHJ56_00140	COG0174	glutamine synthetase
HHJ56_00165	COG4160	amino acid transport
HHJ56_00170	COG4215	(ABC) transporter
HHJ56_00175	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
HHJ56_00180	COG1126	abc transporter atp-binding protein
HHJ56_00190	COG1393	Belongs to the ArsC family
HHJ56_00195	COG3036	rescue of stalled ribosome
HHJ56_00205	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
HHJ56_00210	COG4137	Cytochrome C assembly protein
HHJ56_00215	COG4536	flavin adenine dinucleotide binding
HHJ56_00220	COG0811	peptide transport
HHJ56_00225	COG0848	biopolymer transport protein
HHJ56_00240	COG0246	Mannitol dehydrogenase
HHJ56_00245	COG3722	fumarate hydratase activity
HHJ56_00255	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
HHJ56_00255	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
HHJ56_00260	COG3263	regulation of cellular component size
HHJ56_00265	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
HHJ56_00290	COG0740	serine-type endopeptidase activity
HHJ56_00300	COG1027	Aspartate ammonia-lyase
HHJ56_00305	COG1022	Amp-dependent synthetase and ligase
HHJ56_00310	COG0456	acetyltransferase
HHJ56_00315	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
HHJ56_00335	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
HHJ56_00340	COG1114	Component of the transport system for branched-chain amino acids
HHJ56_00345	COG2183	response to ionizing radiation
HHJ56_00370	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
HHJ56_00375	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
HHJ56_00385	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
HHJ56_00390	COG1446	asparaginase
HHJ56_00395	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
HHJ56_00400	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
HHJ56_00405	COG1447	Phosphotransferase system cellobiose-specific component IIA
HHJ56_00420	COG5645	(Lipo)protein
HHJ56_00425	COG0210	DNA helicase
HHJ56_00445	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
HHJ56_00480	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
HHJ56_00485	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
HHJ56_00490	COG3091	SprT-like family
HHJ56_00495	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
HHJ56_00500	COG0326	Molecular chaperone. Has ATPase activity
HHJ56_00515	COG0330	HflC and HflK could
HHJ56_00520	COG0330	HflC and HflK could
HHJ56_00530	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
HHJ56_00535	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
HHJ56_00545	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
HHJ56_00550	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
HHJ56_00555	COG0470	DNA polymerase III
HHJ56_00560	COG0084	hydrolase, TatD family'
HHJ56_00570	COG1253	flavin adenine dinucleotide binding
HHJ56_00575	COG0254	rRNA binding
HHJ56_00580	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
HHJ56_00585	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
HHJ56_00600	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
HHJ56_00615	COG0537	adenosine 5'-monophosphoramidase activity
HHJ56_00620	COG2116	formate transmembrane transporter activity
HHJ56_00625	COG1882	Formate acetyltransferase
HHJ56_00630	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
HHJ56_00635	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
HHJ56_00645	COG2017	converts alpha-aldose to the beta-anomer
HHJ56_00655	COG1085	galactose-1-phosphate uridylyltransferase
HHJ56_00660	COG1879	ABC-type sugar transport system periplasmic component
HHJ56_00665	COG1129	ABC transporter
HHJ56_00670	COG4211	Belongs to the binding-protein-dependent transport system permease family
HHJ56_00685	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
HHJ56_00690	COG1138	Cytochrome C-type biogenesis protein
HHJ56_00700	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
HHJ56_00705	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
HHJ56_00710	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
HHJ56_00715	COG4133	protoheme IX ABC transporter activity
HHJ56_00730	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
HHJ56_00735	COG0066	3-isopropylmalate dehydratase activity
HHJ56_00740	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
HHJ56_00745	COG2233	PERMEase
HHJ56_00750	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
HHJ56_00755	COG3161	chorismate lyase activity
HHJ56_00770	COG0107	imidazoleglycerol-phosphate synthase activity
HHJ56_00780	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
HHJ56_00790	COG4804	nuclease activity
HHJ56_00795	COG0131	Imidazoleglycerol-phosphate dehydratase
HHJ56_00795	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
HHJ56_00810	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
HHJ56_00815	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
HHJ56_00820	COG2226	methyltransferase
HHJ56_00825	COG0814	amino acid
HHJ56_00835	COG4783	chaperone-mediated protein folding
HHJ56_00855	COG1238	metal cluster binding
HHJ56_00880	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
HHJ56_00885	COG0110	maltose O-acetyltransferase activity
HHJ56_00890	COG1238	metal cluster binding
HHJ56_00900	COG0635	Involved in the biosynthesis of porphyrin-containing compound
HHJ56_00905	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
HHJ56_00910	COG1555	photosystem II stabilization
HHJ56_00915	COG2252	PERMEase
HHJ56_00925	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
HHJ56_00930	COG2814	Major facilitator Superfamily
HHJ56_00935	COG0385	Bile acid
HHJ56_00940	COG2198	Histidine kinase
HHJ56_00940	COG5002	protein histidine kinase activity
HHJ56_00940	COG0784	Response regulator, receiver
HHJ56_00960	COG0105	UTP biosynthetic process
HHJ56_01000	COG0681	Belongs to the peptidase S26 family
HHJ56_01020	COG0557	exoribonuclease II activity
HHJ56_01030	COG2814	Major facilitator Superfamily
HHJ56_01035	COG1566	PFAM secretion protein HlyD family protein
HHJ56_01040	COG1846	Transcriptional regulator
HHJ56_01055	COG1846	Transcriptional regulator
HHJ56_01065	COG2831	hemolysin activation secretion protein
HHJ56_01070	COG3210	domain, Protein
HHJ56_01070	COG3210	domain, Protein
HHJ56_01175	COG0697	spore germination
HHJ56_01190	COG0142	geranyltranstransferase activity
HHJ56_01195	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
HHJ56_01205	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
HHJ56_01210	COG0626	cystathionine gamma-synthase activity
HHJ56_01230	COG0582	viral genome integration into host DNA
HHJ56_01275	COG2974	May be involved in recombination
HHJ56_01345	COG3657	addiction module killer protein
HHJ56_01350	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
HHJ56_01365	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
HHJ56_01390	COG1846	Transcriptional regulator
HHJ56_01535	COG0629	single-stranded DNA binding
HHJ56_01560	COG3617	BRO family, N-terminal domain
HHJ56_01570	COG0582	viral genome integration into host DNA
HHJ56_01590	COG0752	glycyl-tRNA synthetase alpha subunit
HHJ56_01595	COG4545	Glutaredoxin-related protein
HHJ56_01605	COG4804	nuclease activity
HHJ56_01610	COG2852	Protein conserved in bacteria
HHJ56_01635	COG3676	manually curated
HHJ56_01640	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
HHJ56_01645	COG4972	Pilus assembly protein
HHJ56_01665	COG4796	Type ii and iii secretion system protein
HHJ56_01675	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
HHJ56_01680	COG0338	D12 class N6 adenine-specific DNA methyltransferase
HHJ56_01685	COG4701	Protein of unknown function (DUF721)
HHJ56_01695	COG0653	protein targeting
HHJ56_01700	COG0494	nUDIX hydrolase
HHJ56_01705	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
HHJ56_01730	COG0582	viral genome integration into host DNA
HHJ56_01760	COG2026	Addiction module toxin, RelE StbE family
HHJ56_01820	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
HHJ56_01835	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
HHJ56_01840	COG1328	CTP reductase activity
HHJ56_01840	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
HHJ56_01845	COG0602	queuosine metabolic process
HHJ56_01850	COG0084	hydrolase, TatD family'
HHJ56_01860	COG0805	protein transport
HHJ56_01865	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
HHJ56_01875	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
HHJ56_01885	COG2226	methyltransferase
HHJ56_01890	COG0471	metal ion transport
HHJ56_01895	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
HHJ56_01900	COG1575	Belongs to the MenA family. Type 1 subfamily
HHJ56_01905	COG1720	tRNA m6t6A37 methyltransferase activity
HHJ56_01910	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
HHJ56_01915	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
HHJ56_01920	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
HHJ56_01925	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
HHJ56_01945	COG0006	proline dipeptidase activity
HHJ56_01950	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
HHJ56_01955	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
HHJ56_01960	COG1879	ABC-type sugar transport system periplasmic component
HHJ56_01970	COG1129	ABC transporter
HHJ56_01975	COG1172	Belongs to the binding-protein-dependent transport system permease family
HHJ56_02000	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
HHJ56_02020	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
HHJ56_02030	COG1737	Transcriptional regulator
HHJ56_02035	COG2731	YhcH YjgK YiaL family protein
HHJ56_02045	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
HHJ56_02055	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
HHJ56_02075	COG4771	TonB-dependent receptor
HHJ56_02080	COG3721	Heme iron utilization protein
HHJ56_02085	COG0748	coenzyme F420 binding
HHJ56_02090	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
HHJ56_02095	COG1792	Involved in formation and maintenance of cell shape
HHJ56_02100	COG1077	Cell shape determining protein MreB Mrl
HHJ56_02170	COG0656	L-ascorbic acid biosynthetic process
HHJ56_02180	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
HHJ56_02195	COG1028	Short-chain dehydrogenase reductase Sdr
HHJ56_02200	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
HHJ56_02205	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
HHJ56_02210	COG0416	fatty acid biosynthetic process
HHJ56_02220	COG1399	metal-binding, possibly nucleic acid-binding protein
HHJ56_02225	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
HHJ56_02230	COG0500	methyltransferase
HHJ56_02235	COG2830	Protein of unknown function (DUF452)
HHJ56_02245	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
HHJ56_02265	COG0545	Peptidyl-prolyl cis-trans isomerase
HHJ56_02270	COG3676	manually curated
HHJ56_02275	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
HHJ56_02280	COG0194	GDP metabolic process
HHJ56_02290	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
HHJ56_02295	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
HHJ56_02330	COG4991	sh3 domain protein
HHJ56_02335	COG0617	tRNA 3'-terminal CCA addition
HHJ56_02340	COG3955	Domain of unknown function (DUF1919)
HHJ56_02345	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
HHJ56_02350	COG1984	allophanate hydrolase subunit 2
HHJ56_02355	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
HHJ56_02360	COG1914	H( )-stimulated, divalent metal cation uptake system
HHJ56_02375	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
HHJ56_02385	COG0708	Exodeoxyribonuclease III
HHJ56_02400	COG0616	signal peptide processing
HHJ56_02405	COG1840	ABC-type Fe3 transport system, periplasmic component
HHJ56_02410	COG1408	metallophosphoesterase
HHJ56_02415	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
HHJ56_02420	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
HHJ56_02425	COG2863	cytochrome
HHJ56_02435	COG1199	ATP-dependent helicase activity
HHJ56_02440	COG1214	PFAM Peptidase M22, glycoprotease
HHJ56_02445	COG0318	PFAM AMP-dependent synthetase and ligase
HHJ56_02450	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
HHJ56_02465	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
HHJ56_02470	COG4988	ABC transporter
HHJ56_02475	COG0492	ferredoxin-NADP+ reductase activity
HHJ56_02480	COG3118	belongs to the thioredoxin family
HHJ56_02485	COG2610	gluconate transmembrane transporter activity
HHJ56_02490	COG3265	gluconokinase activity
HHJ56_02500	COG0733	neurotransmitter:sodium symporter activity
HHJ56_02505	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
HHJ56_02520	COG4658	electron transport chain
HHJ56_02525	COG4656	Part of a membrane complex involved in electron transport
HHJ56_02535	COG4657	Part of a membrane complex involved in electron transport
HHJ56_02540	COG1090	epimerase
HHJ56_02545	COG1438	arginine binding
HHJ56_02550	COG0039	L-malate dehydrogenase activity
HHJ56_02560	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
HHJ56_02565	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
HHJ56_02565	COG0517	IMP dehydrogenase activity
HHJ56_02595	COG0285	dihydrofolate synthase activity
HHJ56_02600	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
HHJ56_02605	COG3140	Belongs to the UPF0181 family
HHJ56_02610	COG1278	Cold shock
HHJ56_02625	COG1609	Transcriptional regulator
HHJ56_02640	COG1067	ATP-dependent peptidase activity
HHJ56_02650	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
HHJ56_02655	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
HHJ56_02660	COG2252	PERMEase
HHJ56_02665	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
HHJ56_02670	COG1074	ATP-dependent DNA helicase activity
HHJ56_02675	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
HHJ56_02690	COG1846	Transcriptional regulator
HHJ56_02690	COG1940	carbohydrate kinase activity
HHJ56_02700	COG0788	formyltetrahydrofolate deformylase activity
HHJ56_02705	COG0406	alpha-ribazole phosphatase activity
HHJ56_02715	COG0564	pseudouridine synthase activity
HHJ56_02730	COG0776	regulation of translation
HHJ56_02735	COG0791	NLP P60 protein
HHJ56_02765	COG0697	spore germination
HHJ56_02770	COG2925	Exonuclease
HHJ56_02785	COG3676	manually curated
HHJ56_02790	COG2969	positive regulation of protein catabolic process
HHJ56_02815	COG3098	single-species biofilm formation
HHJ56_02820	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
HHJ56_02835	COG1611	Belongs to the LOG family
HHJ56_02840	COG4453	Protein conserved in bacteria
HHJ56_02850	COG1215	transferase activity, transferring glycosyl groups
HHJ56_02855	COG0842	Transport permease protein
HHJ56_02860	COG1131	(ABC) transporter
HHJ56_02865	COG3101	peptidyl-lysine hydroxylation
HHJ56_02875	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
HHJ56_02895	COG1523	belongs to the glycosyl hydrolase 13 family
HHJ56_02900	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
HHJ56_02905	COG1640	4-alpha-glucanotransferase
HHJ56_02910	COG3152	Membrane
HHJ56_02925	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
HHJ56_02930	COG1136	(ABC) transporter
HHJ56_02930	COG0577	efflux transmembrane transporter activity
HHJ56_02935	COG1538	Outer membrane efflux protein
HHJ56_02945	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
HHJ56_02950	COG0508	dehydrogenase complex catalyzes the overall conversion of
HHJ56_02955	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
HHJ56_02960	COG2190	(PTS) system
HHJ56_02965	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
HHJ56_02970	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
HHJ56_02975	COG1162	GTPase activity
HHJ56_02980	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
HHJ56_03000	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
HHJ56_03005	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
HHJ56_03030	COG1522	sequence-specific DNA binding
HHJ56_03040	COG1346	cytolysis
HHJ56_03045	COG1380	Effector of murein hydrolase LrgA
HHJ56_03050	COG1525	nuclease
HHJ56_03060	COG2166	iron-sulfur cluster assembly
HHJ56_03065	COG2268	Band 7 protein
HHJ56_03080	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
HHJ56_03085	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
HHJ56_03085	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
HHJ56_03095	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
HHJ56_03100	COG0617	tRNA 3'-terminal CCA addition
HHJ56_03105	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
HHJ56_03110	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
HHJ56_03110	COG0301	tRNA thio-modification
HHJ56_03120	COG0142	geranyltranstransferase activity
HHJ56_03130	COG1534	Rna-binding protein
HHJ56_03140	COG3217	Mosc domain protein beta barrel domain protein
HHJ56_03140	COG0633	Ferredoxin
HHJ56_03150	COG1605	Chorismate mutase
HHJ56_03150	COG0287	Prephenate dehydrogenase
HHJ56_03155	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
HHJ56_03160	COG0613	PHP domain protein
HHJ56_03165	COG0167	dihydroorotate dehydrogenase activity
HHJ56_03170	COG0308	aminopeptidase N
HHJ56_03175	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
HHJ56_03220	COG0163	prenyltransferase activity
HHJ56_03230	COG1286	toxin biosynthetic process
HHJ56_03235	COG3092	negative regulation of chromosome organization
HHJ56_03245	COG0857	belongs to the CobB CobQ family
HHJ56_03245	COG0280	phosphate acetyltransferase
HHJ56_03270	COG0668	transmembrane transport
HHJ56_03275	COG0795	lipopolysaccharide-transporting ATPase activity
HHJ56_03280	COG0795	lipopolysaccharide-transporting ATPase activity
HHJ56_03305	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
HHJ56_03310	COG2226	methyltransferase
HHJ56_03315	COG1944	ATP diphosphatase activity
HHJ56_03320	COG3105	Protein conserved in bacteria
HHJ56_03325	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
HHJ56_03340	COG0633	Ferredoxin
HHJ56_03350	COG1280	lysine exporter protein (LysE YggA)
HHJ56_03355	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
HHJ56_03360	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
HHJ56_03365	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
HHJ56_03375	COG0814	amino acid
HHJ56_03385	COG2062	phosphohistidine phosphatase, SixA
HHJ56_03395	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
HHJ56_03405	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
HHJ56_03410	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
HHJ56_03410	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
HHJ56_03415	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
HHJ56_03455	COG2999	glutathione oxidoreductase activity
HHJ56_03490	COG1476	TRANSCRIPTIONal
HHJ56_03495	COG0582	viral genome integration into host DNA
HHJ56_03515	COG3306	glycosyltransferase involved in LPS biosynthesis
HHJ56_03520	COG3306	glycosyltransferase involved in LPS biosynthesis
HHJ56_03540	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
HHJ56_03545	COG3683	transport system, periplasmic component
HHJ56_03550	COG0488	(ABC) transporter
HHJ56_03555	COG2195	Cleaves the N-terminal amino acid of tripeptides
HHJ56_03570	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
HHJ56_03575	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
HHJ56_03580	COG1957	nucleoside hydrolase
HHJ56_03585	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
HHJ56_03590	COG0670	Belongs to the BI1 family
HHJ56_03595	COG2920	part of a sulfur-relay system
HHJ56_03605	COG1121	(ABC) transporter
HHJ56_03610	COG1108	ABC-type Mn2 Zn2 transport systems permease components
HHJ56_03615	COG1108	ABC-type Mn2 Zn2 transport systems permease components
HHJ56_03620	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
HHJ56_03625	COG2949	membrane
HHJ56_03635	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
HHJ56_03640	COG4591	ABC-type transport system involved in lipoprotein release permease component
HHJ56_03645	COG1136	(ABC) transporter
HHJ56_03650	COG4591	ABC-type transport system involved in lipoprotein release permease component
HHJ56_03655	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
HHJ56_03675	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
HHJ56_03685	COG1289	transmembrane transporter activity
HHJ56_03700	COG0314	molybdopterin synthase activity
HHJ56_03705	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
HHJ56_03710	COG0315	cyclic pyranopterin monophosphate synthase activity
HHJ56_03755	COG1696	Membrane protein involved in D-alanine export
HHJ56_03765	COG0303	'Molybdopterin
HHJ56_03770	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
HHJ56_03775	COG2431	L-lysine efflux transmembrane transporter activity
HHJ56_03780	COG1528	Iron-storage protein
HHJ56_03785	COG1528	Iron-storage protein
HHJ56_03795	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
HHJ56_03800	COG0589	response to stress
HHJ56_03810	COG2171	N-acyltransferase activity
HHJ56_03815	COG0583	DNA-binding transcription factor activity
HHJ56_03825	COG0009	L-threonylcarbamoyladenylate synthase
HHJ56_03840	COG0792	nuclease activity
HHJ56_03845	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
HHJ56_03850	COG2823	Periplasmic or secreted lipoprotein
HHJ56_03855	COG0210	DNA helicase
HHJ56_03875	COG0583	DNA-binding transcription factor activity
HHJ56_03880	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
HHJ56_03895	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
HHJ56_03900	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
HHJ56_03915	COG0626	cystathionine gamma-synthase activity
HHJ56_03920	COG0450	alkyl hydroperoxide reductase
HHJ56_03925	COG3100	YcgL domain-containing protein
HHJ56_03930	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
HHJ56_03930	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
HHJ56_03935	COG1560	Kdo2-lipid A biosynthetic process
HHJ56_03940	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
HHJ56_03945	COG3108	Peptidase M15
HHJ56_03950	COG2989	Protein conserved in bacteria
HHJ56_03955	COG0793	Belongs to the peptidase S41A family
HHJ56_03960	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
HHJ56_03965	COG2995	paraquat-inducible protein a
HHJ56_03970	COG3008	intermembrane lipid transfer
HHJ56_03975	COG0187	DNA topoisomerase II activity
HHJ56_03985	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
HHJ56_03990	COG1328	CTP reductase activity
HHJ56_03995	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
HHJ56_04020	COG0583	DNA-binding transcription factor activity
HHJ56_04025	COG0616	signal peptide processing
HHJ56_04030	COG0778	Nitroreductase
HHJ56_04050	COG0039	L-malate dehydrogenase activity
HHJ56_04055	COG0440	acetolactate synthase activity
HHJ56_04060	COG0028	Belongs to the TPP enzyme family
HHJ56_04065	COG1757	Na H antiporter
HHJ56_04080	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
HHJ56_04105	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
HHJ56_04130	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
HHJ56_04135	COG0494	nUDIX hydrolase
HHJ56_04145	COG1876	peptidase activity
HHJ56_04150	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
HHJ56_04155	COG1393	Belongs to the ArsC family
HHJ56_04175	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
HHJ56_04180	COG0083	homoserine kinase activity
HHJ56_04185	COG0527	aspartate kinase activity
HHJ56_04185	COG0460	homoserine dehydrogenase
HHJ56_04195	COG0346	lactoylglutathione lyase activity
HHJ56_04200	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
HHJ56_04205	COG2056	Na+-H+ antiporter family
HHJ56_04210	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
HHJ56_04210	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
HHJ56_04210	COG0506	proline dehydrogenase activity
HHJ56_04215	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
HHJ56_04230	COG3945	hemerythrin HHE cation binding domain
HHJ56_04235	COG1862	Preprotein translocase
HHJ56_04240	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
HHJ56_04245	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
HHJ56_04250	COG0741	lytic transglycosylase activity
HHJ56_04265	COG4221	oxidoreductase activity
HHJ56_04270	COG2814	Major facilitator Superfamily
HHJ56_04295	COG3210	domain, Protein
HHJ56_04320	COG2189	Belongs to the N(4) N(6)-methyltransferase family
HHJ56_04330	COG0583	DNA-binding transcription factor activity
HHJ56_04335	COG0642	Histidine kinase
HHJ56_04340	COG0745	RESPONSE REGULATOR receiver
HHJ56_04345	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
HHJ56_04355	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
HHJ56_04365	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
HHJ56_04370	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
HHJ56_04385	COG3119	arylsulfatase activity
HHJ56_04395	COG2089	acid synthase
HHJ56_04410	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
HHJ56_04420	COG1621	beta-fructofuranosidase activity
HHJ56_04435	COG0802	atpase or kinase
HHJ56_04440	COG0860	N-Acetylmuramoyl-L-alanine amidase
HHJ56_04440	COG1388	LysM domain
HHJ56_04445	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
HHJ56_04455	COG1923	regulation of RNA biosynthetic process
HHJ56_04460	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
HHJ56_04470	COG3099	Belongs to the UPF0263 family
HHJ56_04495	COG4735	regulation of single-species biofilm formation
HHJ56_04530	COG2378	regulation of single-species biofilm formation
HHJ56_04545	COG1741	Belongs to the pirin family
HHJ56_04550	COG2951	lytic endotransglycosylase activity
HHJ56_04555	COG1216	Glycosyl transferase, family 2
HHJ56_04560	COG1216	Glycosyl transferase, family 2
HHJ56_04570	COG3306	glycosyltransferase involved in LPS biosynthesis
HHJ56_04580	COG5039	Polysaccharide pyruvyl transferase
HHJ56_04585	COG1434	Gram-negative-bacterium-type cell wall biogenesis
HHJ56_04590	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
HHJ56_04595	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
HHJ56_04595	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
HHJ56_04600	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
HHJ56_04600	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
HHJ56_04605	COG0489	protein tyrosine kinase activity
HHJ56_04610	COG0672	)-iron permease
HHJ56_04625	COG1136	(ABC) transporter
HHJ56_04625	COG0577	efflux transmembrane transporter activity
HHJ56_04635	COG1136	(ABC) transporter
HHJ56_04640	COG0676	glucose-6-phosphate 1-epimerase activity
HHJ56_04655	COG3177	Filamentation induced by cAMP protein fic
HHJ56_04665	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
HHJ56_04670	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
HHJ56_04675	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
HHJ56_04680	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
HHJ56_04680	COG2885	chlorophyll binding
HHJ56_04685	COG2824	Alkylphosphonate utilization operon protein PhnA
HHJ56_04690	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
HHJ56_04695	COG1120	ATPase activity
HHJ56_04715	COG5266	PFAM Nickel transport complex, NikM subunit, transmembrane
HHJ56_04720	COG4774	siderophore transport
HHJ56_04725	COG4774	siderophore transport
HHJ56_04735	COG0814	amino acid
HHJ56_04740	COG2964	Protein conserved in bacteria
HHJ56_04750	COG0469	pyruvate kinase activity
HHJ56_04755	COG0778	Nitroreductase
HHJ56_04765	COG0037	tRNA processing
HHJ56_04770	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
HHJ56_04780	COG0508	dehydrogenase complex catalyzes the overall conversion of
HHJ56_04785	COG0567	Dehydrogenase, E1 component
HHJ56_04790	COG0372	Belongs to the citrate synthase family
HHJ56_04795	COG3381	protein complex oligomerization
HHJ56_04800	COG2249	NAD(P)H dehydrogenase (quinone) activity
HHJ56_04810	COG0330	HflC and HflK could
HHJ56_04835	COG1846	Transcriptional regulator
HHJ56_04835	COG1940	carbohydrate kinase activity
HHJ56_04850	COG0497	DNA recombination
HHJ56_04855	COG0360	Binds together with S18 to 16S ribosomal RNA
HHJ56_04860	COG2965	DNA replication, synthesis of RNA primer
HHJ56_04885	COG1530	ribonuclease E activity
HHJ56_04945	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
HHJ56_04955	COG0024	Methionine aminopeptidase
HHJ56_04960	COG0316	Belongs to the HesB IscA family
HHJ56_04970	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
HHJ56_04980	COG4166	transmembrane transport
HHJ56_04985	COG2832	Protein of unknown function (DUF454)
HHJ56_04990	COG0339	signal peptide processing
HHJ56_04995	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
HHJ56_05000	COG1053	succinate dehydrogenase
HHJ56_05005	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
HHJ56_05015	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
HHJ56_05025	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
HHJ56_05030	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
HHJ56_05035	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
HHJ56_05050	COG1278	Cold shock
HHJ56_05055	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
HHJ56_05065	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
HHJ56_05070	COG5007	Belongs to the BolA IbaG family
HHJ56_05075	COG3113	response to antibiotic
HHJ56_05080	COG2854	intermembrane phospholipid transfer
HHJ56_05085	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
HHJ56_05090	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
HHJ56_05095	COG1127	ABC transporter
HHJ56_05105	COG3117	lipopolysaccharide transmembrane transporter activity
HHJ56_05110	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
HHJ56_05115	COG1137	ATPase activity
HHJ56_05120	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
HHJ56_05135	COG2186	Transcriptional regulator
HHJ56_05150	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
HHJ56_05165	COG1028	Short-chain dehydrogenase reductase Sdr
HHJ56_05215	COG2267	carboxylic ester hydrolase activity
HHJ56_05230	COG0436	Aminotransferase
HHJ56_05250	COG0861	Integral membrane protein TerC family
HHJ56_05260	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
HHJ56_05265	COG2067	long-chain fatty acid transport protein
HHJ56_05275	COG2860	membrane
HHJ56_05285	COG0527	aspartate kinase activity
HHJ56_05290	COG2897	thiosulfate sulfurtransferase activity
HHJ56_05295	COG2391	methyltransferase activity
HHJ56_05300	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
HHJ56_05315	COG3684	Belongs to the aldolase LacD family
HHJ56_05320	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
HHJ56_05325	COG1349	DNA-binding transcription factor activity
HHJ56_05335	COG3119	arylsulfatase activity
HHJ56_05340	COG0641	radical SAM
HHJ56_05350	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
HHJ56_05355	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
HHJ56_05355	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HHJ56_05360	COG3716	PTS system mannose fructose sorbose family IID component
HHJ56_05365	COG3715	PTS system
HHJ56_05370	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HHJ56_05375	COG2222	sugar isomerase
HHJ56_05385	COG3119	arylsulfatase activity
HHJ56_05395	COG1028	Short-chain dehydrogenase reductase Sdr
HHJ56_05405	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
HHJ56_05410	COG0800	Aldolase
HHJ56_05415	COG0584	glycerophosphoryl diester phosphodiesterase
HHJ56_05420	COG3842	ATPase activity
HHJ56_05430	COG1177	transmembrane transport
HHJ56_05455	COG1509	lysine 2,3-aminomutase activity
HHJ56_05460	COG3061	Opacity-associated protein A
HHJ56_05460	COG3266	domain, Protein
HHJ56_05470	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
HHJ56_05475	COG2814	Major facilitator Superfamily
HHJ56_05480	COG4974	Belongs to the 'phage' integrase family
HHJ56_05485	COG1605	Chorismate mutase
HHJ56_05485	COG0077	Prephenate dehydratase
HHJ56_05490	COG3321	synthase
HHJ56_05490	COG1028	Short-chain dehydrogenase reductase Sdr
HHJ56_05490	COG0604	alcohol dehydrogenase
HHJ56_05505	COG4221	oxidoreductase activity
HHJ56_05520	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
HHJ56_05525	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
HHJ56_05530	COG0849	cell division
HHJ56_05535	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
HHJ56_05560	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
HHJ56_05570	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
HHJ56_05580	COG0768	penicillin binding
HHJ56_05585	COG3116	cell division
HHJ56_05605	COG1444	tRNA N-acetyltransferase activity
HHJ56_05615	COG1702	phosphate starvation-inducible protein PhoH
HHJ56_05625	COG0204	Acyl-transferase
HHJ56_05635	COG0121	glutamine amidotransferase
HHJ56_05640	COG0814	amino acid
HHJ56_05645	COG1760	l-serine dehydratase
HHJ56_05650	COG1138	Cytochrome C-type biogenesis protein
HHJ56_05660	COG4235	cytochrome complex assembly
HHJ56_05660	COG3088	subunit of a heme lyase
HHJ56_05665	COG4235	cytochrome complex assembly
HHJ56_05665	COG3088	subunit of a heme lyase
HHJ56_05670	COG2081	HI0933 family
HHJ56_05680	COG3301	Polysulphide reductase, NrfD
HHJ56_05685	COG0437	4 iron, 4 sulfur cluster binding
HHJ56_05690	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
HHJ56_05695	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
HHJ56_05715	COG1686	Belongs to the peptidase S11 family
HHJ56_05725	COG0772	Belongs to the SEDS family
HHJ56_05730	COG0768	penicillin binding
HHJ56_05740	COG0799	negative regulation of ribosome biogenesis
HHJ56_05745	COG0513	Belongs to the DEAD box helicase family
HHJ56_05750	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
HHJ56_05780	COG3842	ATPase activity
HHJ56_05820	COG1704	LemA family
HHJ56_05830	COG0247	lactate metabolic process
HHJ56_05830	COG0277	FAD linked oxidase domain protein
HHJ56_05845	COG3047	cAMP biosynthetic process
HHJ56_05860	COG1607	acyl-coa hydrolase
HHJ56_05865	COG2350	Protein conserved in bacteria
HHJ56_05885	COG1566	PFAM secretion protein HlyD family protein
HHJ56_05895	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
HHJ56_05900	COG0195	Participates in both transcription termination and antitermination
HHJ56_05915	COG0515	serine threonine protein kinase
HHJ56_05920	COG1115	amino acid carrier protein
HHJ56_05935	COG1940	carbohydrate kinase activity
HHJ56_05940	COG0671	phosphoesterase, PA-phosphatase related
HHJ56_05970	COG0307	riboflavin synthase, alpha
HHJ56_05980	COG0673	inositol 2-dehydrogenase activity
HHJ56_05985	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
HHJ56_05990	COG0586	Pfam SNARE associated Golgi protein
HHJ56_05995	COG0322	excinuclease ABC activity
HHJ56_06000	COG1116	anion transmembrane transporter activity
HHJ56_06005	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
HHJ56_06010	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
HHJ56_06015	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
HHJ56_06020	COG2835	tetraacyldisaccharide 4'-kinase activity
HHJ56_06025	COG1663	tetraacyldisaccharide 4'-kinase activity
HHJ56_06030	COG1132	(ABC) transporter
HHJ56_06035	COG0658	competence protein
HHJ56_06035	COG2333	competence protein COMEC
HHJ56_06045	COG0351	phosphomethylpyrimidine kinase
HHJ56_06050	COG0352	thiamine-phosphate diphosphorylase activity
HHJ56_06060	COG3266	domain, Protein
HHJ56_06060	COG3468	outer membrane autotransporter barrel domain protein
HHJ56_06065	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
HHJ56_06070	COG3025	triphosphatase activity
HHJ56_06075	COG1392	Phosphate transport regulator
HHJ56_06080	COG0306	phosphate transporter
HHJ56_06085	COG0288	reversible hydration of carbon dioxide
HHJ56_06090	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
HHJ56_06095	COG1448	Aminotransferase
HHJ56_06100	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
HHJ56_06105	COG3835	regulator
HHJ56_06110	COG2610	gluconate transmembrane transporter activity
HHJ56_06115	COG1929	Belongs to the glycerate kinase type-1 family
HHJ56_06140	COG0494	nUDIX hydrolase
HHJ56_06150	COG3041	Addiction module toxin RelE StbE family
HHJ56_06155	COG3077	Addiction module antitoxin, RelB DinJ family
HHJ56_06190	COG2932	Transcriptional regulator
HHJ56_06210	COG0305	Participates in initiation and elongation during chromosome replication
HHJ56_06215	COG3102	Protein conserved in bacteria
HHJ56_06225	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
HHJ56_06230	COG4149	molybdate abc transporter
HHJ56_06235	COG0725	ABC transporter, periplasmic molybdate-binding protein
HHJ56_06240	COG2005	Transcriptional regulator
HHJ56_06245	COG0786	glutamate:sodium symporter activity
HHJ56_06260	COG0730	response to heat
HHJ56_06265	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
HHJ56_06275	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
HHJ56_06280	COG1178	ABC-type Fe3 transport system permease component
HHJ56_06285	COG4143	(ABC) transporter
HHJ56_06290	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
HHJ56_06300	COG3842	ATPase activity
HHJ56_06305	COG1176	ABC-type spermidine putrescine transport system, permease component I
HHJ56_06310	COG1177	transmembrane transport
HHJ56_06315	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
HHJ56_06325	COG1733	regulation of RNA biosynthetic process
HHJ56_06330	COG0281	malic enzyme
HHJ56_06340	COG0673	inositol 2-dehydrogenase activity
HHJ56_06350	COG1175	transmembrane transport
HHJ56_06360	COG3842	ATPase activity
HHJ56_06365	COG2186	Transcriptional regulator
HHJ56_06370	COG0673	inositol 2-dehydrogenase activity
HHJ56_06375	COG1966	Carbon starvation protein
HHJ56_06380	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
HHJ56_06385	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
HHJ56_06390	COG1560	Kdo2-lipid A biosynthetic process
HHJ56_06395	COG0730	response to heat
HHJ56_06400	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
HHJ56_06410	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
HHJ56_06410	COG3264	Mechanosensitive ion channel
HHJ56_06415	COG0318	PFAM AMP-dependent synthetase and ligase
HHJ56_06420	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
HHJ56_06425	COG0596	Alpha beta hydrolase
HHJ56_06435	COG0716	FMN binding
HHJ56_06440	COG0735	belongs to the Fur family
HHJ56_06450	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
HHJ56_06455	COG3094	Invasion gene expression up-regulator, SirB
HHJ56_06470	COG4221	oxidoreductase activity
HHJ56_06495	COG2814	Major facilitator Superfamily
HHJ56_06510	COG2249	NAD(P)H dehydrogenase (quinone) activity
HHJ56_06515	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
HHJ56_06520	COG0525	valine-tRNA ligase activity
HHJ56_06535	COG4185	zeta toxin
HHJ56_06545	COG2153	protein acetylation
HHJ56_06550	COG2927	DNA polymerase III (CHI subunit)
HHJ56_06560	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
HHJ56_06565	COG0512	Glutamine amidotransferase of anthranilate synthase
HHJ56_06570	COG1942	4-Oxalocrotonate Tautomerase
HHJ56_06575	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
HHJ56_06580	COG0134	indole-3-glycerol-phosphate synthase activity
HHJ56_06580	COG0135	phosphoribosylanthranilate isomerase activity
HHJ56_06595	COG3422	double-strand break repair
HHJ56_06605	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
HHJ56_06605	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
HHJ56_06610	COG0517	IMP dehydrogenase activity
HHJ56_06610	COG0516	GMP reductase activity
HHJ56_06625	COG0518	GMP synthase (glutamine-hydrolyzing) activity
HHJ56_06625	COG0519	Catalyzes the synthesis of GMP from XMP
HHJ56_06630	COG0582	viral genome integration into host DNA
HHJ56_06665	COG3646	Phage regulatory protein
HHJ56_06690	COG3179	chitinase
HHJ56_06875	COG1484	DNA-dependent DNA replication
HHJ56_06900	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
HHJ56_06980	COG2974	May be involved in recombination
HHJ56_07025	COG0270	DNA (cytosine-5-)-methyltransferase activity
HHJ56_07050	COG0251	oxidation-reduction process
HHJ56_07055	COG3021	interspecies interaction between organisms
HHJ56_07065	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
HHJ56_07135	COG1982	Orn Lys Arg decarboxylase major
HHJ56_07140	COG0531	amino acid
HHJ56_07150	COG2217	Heavy metal translocating P-type atpase
HHJ56_07170	COG0437	4 iron, 4 sulfur cluster binding
HHJ56_07175	COG2864	formate dehydrogenase
HHJ56_07195	COG1687	branched-chain amino acid
HHJ56_07200	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
HHJ56_07205	COG0583	DNA-binding transcription factor activity
HHJ56_07215	COG0471	metal ion transport
HHJ56_07225	COG1643	Atp-dependent helicase
HHJ56_07230	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
HHJ56_07235	COG0291	Belongs to the bacterial ribosomal protein bL35 family
HHJ56_07245	COG0484	heat shock protein binding
HHJ56_07255	COG1108	ABC-type Mn2 Zn2 transport systems permease components
HHJ56_07265	COG0739	heme binding
HHJ56_07270	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
HHJ56_07285	COG2850	peptidyl-arginine hydroxylation
HHJ56_07295	COG2867	negative regulation of translational initiation
HHJ56_07305	COG0012	GTP binding
HHJ56_07315	COG0531	amino acid
HHJ56_07320	COG3283	Transcriptional regulator of aromatic amino acids metabolism
HHJ56_07330	COG3106	COG3106 Predicted ATPase
HHJ56_07335	COG4166	transmembrane transport
HHJ56_07340	COG4168	peptide transport system, permease
HHJ56_07345	COG4171	peptide transport system, permease
HHJ56_07350	COG4172	Belongs to the ABC transporter superfamily
HHJ56_07355	COG4172	Belongs to the ABC transporter superfamily
HHJ56_07360	COG0257	Belongs to the bacterial ribosomal protein bL36 family
HHJ56_07380	COG2259	Doxx family
HHJ56_07395	COG0151	Belongs to the GarS family
HHJ56_07400	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
HHJ56_07405	COG0745	RESPONSE REGULATOR receiver
HHJ56_07425	COG0023	Translation Initiation Factor
HHJ56_07435	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
HHJ56_07440	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
HHJ56_07445	COG0776	regulation of translation
HHJ56_07450	COG0539	negative regulation of cytoplasmic translation
HHJ56_07465	COG0612	Peptidase, M16
HHJ56_07470	COG2990	Protein conserved in bacteria
HHJ56_07480	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
HHJ56_07515	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
HHJ56_07520	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
HHJ56_07525	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
HHJ56_07530	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
HHJ56_07540	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
HHJ56_07545	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
HHJ56_07550	COG1012	belongs to the aldehyde dehydrogenase family
HHJ56_07550	COG1454	alcohol dehydrogenase
HHJ56_07565	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
HHJ56_07575	COG4178	(ABC) transporter
HHJ56_07585	COG5413	integral membrane protein
HHJ56_07590	COG1917	Cupin 2, conserved barrel domain protein
HHJ56_07590	COG4977	sequence-specific DNA binding
HHJ56_07595	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
HHJ56_07600	COG1115	amino acid carrier protein
HHJ56_07610	COG0237	dephospho-CoA kinase activity
HHJ56_07610	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
HHJ56_07620	COG1459	type II secretion system
HHJ56_07625	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
HHJ56_07625	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HHJ56_07630	COG3715	PTS system
HHJ56_07635	COG3716	PTS system mannose fructose sorbose family IID component
HHJ56_07650	COG0328	RNA-DNA hybrid ribonuclease activity
HHJ56_07675	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
HHJ56_07680	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
HHJ56_07685	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
HHJ56_07705	COG0495	leucyl-tRNA aminoacylation
HHJ56_07710	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
HHJ56_07715	COG1466	dna polymerase III delta subunit
HHJ56_07725	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
HHJ56_07740	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
HHJ56_07745	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
HHJ56_07750	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
HHJ56_07760	COG0750	zinc metalloprotease
HHJ56_07765	COG0575	Belongs to the CDS family
HHJ56_07785	COG0528	UMP kinase activity
HHJ56_07790	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
HHJ56_07795	COG4969	Belongs to the N-Me-Phe pilin family
HHJ56_07800	COG3023	N-Acetylmuramoyl-L-alanine amidase
HHJ56_07810	COG0494	nUDIX hydrolase
HHJ56_07815	COG0730	response to heat
HHJ56_07830	COG0590	tRNA wobble adenosine to inosine editing
HHJ56_07835	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
HHJ56_07840	COG0363	glucosamine-6-phosphate deaminase activity
HHJ56_07845	COG1793	dna ligase
HHJ56_07885	COG1215	transferase activity, transferring glycosyl groups
HHJ56_07915	COG0602	queuosine metabolic process
HHJ56_07920	COG0720	synthase
HHJ56_07925	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
HHJ56_07930	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
HHJ56_07995	COG1598	PFAM Uncharacterised protein family UPF0150
HHJ56_08080	COG1783	phage Terminase large subunit
HHJ56_08085	COG3728	DNA packaging
HHJ56_08135	COG3617	BRO family, N-terminal domain
HHJ56_08220	COG3728	DNA packaging
HHJ56_08225	COG1783	phage Terminase large subunit
HHJ56_08230	COG3567	Phage-associated protein, HI1409 family
HHJ56_08235	COG2369	cell adhesion
HHJ56_08245	COG3566	protein conserved in bacteria
HHJ56_08400	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
HHJ56_08405	COG0165	Argininosuccinate lyase
HHJ56_08420	COG0642	Histidine kinase
HHJ56_08425	COG0745	RESPONSE REGULATOR receiver
HHJ56_08450	COG0196	riboflavin kinase activity
HHJ56_08465	COG0783	Belongs to the Dps family
HHJ56_08470	COG0512	Glutamine amidotransferase of anthranilate synthase
HHJ56_08480	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
HHJ56_08500	COG0251	oxidation-reduction process
HHJ56_08510	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
HHJ56_08515	COG0546	phosphoglycolate phosphatase activity
HHJ56_08525	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
HHJ56_08535	COG0705	Rhomboid family
HHJ56_08540	COG1349	DNA-binding transcription factor activity
HHJ56_08545	COG0247	lactate metabolic process
HHJ56_08555	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
HHJ56_08560	COG2271	Major facilitator Superfamily
HHJ56_08565	COG0584	glycerophosphoryl diester phosphodiesterase
HHJ56_08570	COG0552	protein localization to endoplasmic reticulum
HHJ56_08575	COG0742	ribosomal rna small subunit methyltransferase
HHJ56_08580	COG0758	DNA mediated transformation
HHJ56_08585	COG3063	Type IV pilus biogenesis stability protein PilW
HHJ56_08595	COG0628	permease
HHJ56_08605	COG0521	Mo-molybdopterin cofactor biosynthetic process
HHJ56_08610	COG4589	Belongs to the CDS family
HHJ56_08620	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
HHJ56_08625	COG0490	domain, Protein
HHJ56_08625	COG0471	metal ion transport
HHJ56_08630	COG1426	Protein conserved in bacteria
HHJ56_08635	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
HHJ56_08645	COG2976	Protein conserved in bacteria
HHJ56_08650	COG3307	-O-antigen
HHJ56_08665	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
HHJ56_08685	COG0312	modulator of DNA gyrase
HHJ56_08690	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
HHJ56_08700	COG1271	oxidase subunit
HHJ56_08705	COG1294	oxidase, subunit
HHJ56_08715	COG3790	cyd operon protein YbgE
HHJ56_08725	COG0824	Thioesterase
HHJ56_08730	COG0811	peptide transport
HHJ56_08735	COG0848	biopolymer transport protein
HHJ56_08740	COG3064	Membrane
HHJ56_08760	COG2165	general secretion pathway protein
HHJ56_08765	COG4795	General secretion pathway protein
HHJ56_08780	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
HHJ56_08785	COG0561	phosphatase activity
HHJ56_08790	COG0235	Class ii aldolase
HHJ56_08795	COG3623	hexulose-6-phosphate isomerase
HHJ56_08820	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
HHJ56_08895	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
HHJ56_08910	COG2095	MarC family integral membrane protein
HHJ56_08915	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
HHJ56_08920	COG1114	Component of the transport system for branched-chain amino acids
HHJ56_08925	COG1210	Utp--glucose-1-phosphate uridylyltransferase
HHJ56_08935	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
HHJ56_08950	COG3956	TIGRFAM MazG family protein
HHJ56_08960	COG0583	DNA-binding transcription factor activity
HHJ56_08970	COG3119	arylsulfatase activity
HHJ56_08980	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
HHJ56_09015	COG0019	diaminopimelate decarboxylase activity
HHJ56_09050	COG2195	Cleaves the N-terminal amino acid of tripeptides
HHJ56_09070	COG3153	acetyltransferase
HHJ56_09085	COG1230	cation diffusion facilitator family transporter
HHJ56_09120	COG2271	Major facilitator Superfamily
HHJ56_09125	COG0483	inositol monophosphate 1-phosphatase activity
HHJ56_09135	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
HHJ56_09140	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
HHJ56_09150	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
HHJ56_09175	COG0357	Ribosomal RNA small subunit methyltransferase G
HHJ56_09185	COG0716	FMN binding
HHJ56_09195	COG1494	fructose-1,6-bisphosphatase
HHJ56_09200	COG0187	DNA topoisomerase II activity
HHJ56_09210	COG4988	ABC transporter
HHJ56_09215	COG1132	(ABC) transporter
HHJ56_09220	COG1858	cytochrome C peroxidase
HHJ56_09230	COG0733	neurotransmitter:sodium symporter activity
HHJ56_09245	COG0551	DNA topoisomerase type I activity
HHJ56_09265	COG3070	regulator of competence-specific genes
HHJ56_09305	COG1609	Transcriptional regulator
HHJ56_09305	COG2207	Transcriptional regulator
HHJ56_09310	COG1070	Carbohydrate kinase
HHJ56_09315	COG2115	Belongs to the xylose isomerase family
HHJ56_09320	COG0436	Aminotransferase
HHJ56_09325	COG1757	Na H antiporter
HHJ56_09330	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
HHJ56_09345	COG1349	DNA-binding transcription factor activity
HHJ56_09350	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
HHJ56_09355	COG1028	Short-chain dehydrogenase reductase Sdr
HHJ56_09365	COG3732	PTS system glucitol sorbitol-specific
HHJ56_09380	COG1385	rRNA (uridine-N3-)-methyltransferase activity
HHJ56_09395	COG4214	carbohydrate transport
HHJ56_09400	COG1129	ABC transporter
HHJ56_09405	COG4213	ABC transporter substrate-binding protein
HHJ56_09410	COG1194	a g-specific adenine glycosylase
HHJ56_09415	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
HHJ56_09435	COG0598	Magnesium transport protein CorA
HHJ56_09440	COG0762	integral membrane protein
HHJ56_09450	COG2177	Part of the ABC transporter FtsEX involved in
HHJ56_09455	COG2884	Cell division ATP-binding protein ftsE
HHJ56_09465	COG0235	Class ii aldolase
HHJ56_09470	COG3623	hexulose-6-phosphate isomerase
HHJ56_09480	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
HHJ56_09485	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
HHJ56_09490	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
HHJ56_09495	COG2731	YhcH YjgK YiaL family protein
HHJ56_09500	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
HHJ56_09505	COG1414	Transcriptional regulator
HHJ56_09515	COG1295	ribonuclease BN
HHJ56_09525	COG2197	response regulator
HHJ56_09535	COG0181	hydroxymethylbilane synthase activity
HHJ56_09545	COG2959	enzyme of heme biosynthesis
HHJ56_09550	COG3071	HemY protein
HHJ56_09555	COG3787	Belongs to the UPF0306 family
HHJ56_09560	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
HHJ56_09565	COG0076	glutamate decarboxylase activity
HHJ56_09570	COG0606	chelatase, subunit chli
HHJ56_09575	COG0220	tRNA (guanine-N7-)-methyltransferase activity
HHJ56_09580	COG3171	Protein conserved in bacteria
HHJ56_09585	COG1921	L-seryl-tRNASec selenium transferase activity
HHJ56_09590	COG3276	selenocysteine insertion sequence binding
HHJ56_09600	COG1530	ribonuclease E activity
HHJ56_09610	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
HHJ56_09620	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
HHJ56_09640	COG0511	ligase activity, forming carbon-carbon bonds
HHJ56_09645	COG0439	Biotin carboxylase
HHJ56_09650	COG3924	membrane
HHJ56_09655	COG4145	pantothenate transmembrane transporter activity
HHJ56_09675	COG0538	isocitrate dehydrogenase activity
HHJ56_09690	COG3477	response to acidic pH
HHJ56_09695	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
HHJ56_09700	COG2818	Glycosylase
HHJ56_09705	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
HHJ56_09715	COG3021	interspecies interaction between organisms
HHJ56_09725	COG1522	sequence-specific DNA binding
HHJ56_09765	COG3978	acetolactate synthase activity
HHJ56_09775	COG0561	phosphatase activity
HHJ56_09780	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
HHJ56_09785	COG2267	carboxylic ester hydrolase activity
HHJ56_09790	COG1309	transcriptional regulator
HHJ56_09795	COG0583	DNA-binding transcription factor activity
HHJ56_09800	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
HHJ56_09800	COG0678	peroxiredoxin activity
HHJ56_09810	COG0545	Peptidyl-prolyl cis-trans isomerase
HHJ56_09815	COG2964	Protein conserved in bacteria
HHJ56_09825	COG2923	Belongs to the DsrF TusC family
HHJ56_09855	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
HHJ56_09860	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
HHJ56_09885	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
HHJ56_09890	COG0081	regulation of translation
HHJ56_09905	COG0085	RNA polymerase activity
HHJ56_09910	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
HHJ56_09915	COG1584	GPR1 FUN34 yaaH family protein
HHJ56_09920	COG0745	RESPONSE REGULATOR receiver
HHJ56_09925	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
HHJ56_09940	COG3083	sulfuric ester hydrolase activity
HHJ56_09945	COG0402	S-adenosylhomocysteine deaminase activity
HHJ56_09955	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
HHJ56_09960	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
HHJ56_09965	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
HHJ56_09970	COG1561	YicC-like family, N-terminal region
HHJ56_09975	COG0354	folic acid binding
HHJ56_09985	COG3084	Protein conserved in bacteria
HHJ56_09990	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
HHJ56_09995	COG3085	chromosome segregation
HHJ56_10000	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
HHJ56_10015	COG0560	Phosphoserine phosphatase
HHJ56_10025	COG0268	Binds directly to 16S ribosomal RNA
HHJ56_10030	COG0728	peptidoglycan biosynthetic process
HHJ56_10035	COG0729	surface antigen
HHJ56_10040	COG2911	Protein conserved in bacteria
HHJ56_10045	COG0248	Ppx GppA phosphatase
HHJ56_10050	COG0668	transmembrane transport
HHJ56_10055	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
HHJ56_10090	COG0433	COG0433 Predicted ATPase
HHJ56_10095	COG2990	Protein conserved in bacteria
HHJ56_10100	COG3676	manually curated
HHJ56_10105	COG0004	ammonium transporteR
HHJ56_10105	COG0004	ammonium transporteR
HHJ56_10130	COG2853	Lipoprotein
HHJ56_10140	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
HHJ56_10145	COG0513	Belongs to the DEAD box helicase family
HHJ56_10155	COG2837	iron assimilation
HHJ56_10170	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
HHJ56_10175	COG1959	2 iron, 2 sulfur cluster binding
HHJ56_10185	COG0822	iron-sulfur transferase activity
HHJ56_10195	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
HHJ56_10205	COG0443	Heat shock 70 kDa protein
HHJ56_10210	COG0633	Ferredoxin
HHJ56_10225	COG3716	PTS system mannose fructose sorbose family IID component
HHJ56_10230	COG3715	PTS system
HHJ56_10235	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HHJ56_10235	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
HHJ56_10240	COG0561	phosphatase activity
HHJ56_10245	COG0463	Glycosyl transferase, family 2
HHJ56_10250	COG0859	PFAM glycosyl transferase family 9
HHJ56_10255	COG0228	four-way junction DNA binding
HHJ56_10260	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
HHJ56_10270	COG0335	large ribosomal subunit rRNA binding
HHJ56_10275	COG1368	sulfuric ester hydrolase activity
HHJ56_10285	COG0280	phosphate acetyltransferase
HHJ56_10285	COG0281	malic enzyme
HHJ56_10290	COG1187	pseudouridine synthase activity
HHJ56_10295	COG2814	Major facilitator Superfamily
HHJ56_10300	COG0789	Transcriptional regulator
HHJ56_10305	COG2194	sulfuric ester hydrolase activity
HHJ56_10310	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
HHJ56_10315	COG1045	serine acetyltransferase
HHJ56_10330	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
HHJ56_10335	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
HHJ56_10340	COG0778	Nitroreductase
HHJ56_10350	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
HHJ56_10355	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
HHJ56_10360	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
HHJ56_10365	COG3719	Belongs to the RNase T2 family
HHJ56_10370	COG0126	phosphoglycerate kinase activity
HHJ56_10375	COG0191	fructose-bisphosphate aldolase activity
HHJ56_10385	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
HHJ56_10390	COG1252	NADH dehydrogenase
HHJ56_10405	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
HHJ56_10405	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
HHJ56_10410	COG0569	domain protein
HHJ56_10415	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
HHJ56_10430	COG0513	Belongs to the DEAD box helicase family
HHJ56_10435	COG4785	May be involved in cell division
HHJ56_10445	COG3005	denitrification pathway
HHJ56_10450	COG3043	anaerobic respiration
HHJ56_10455	COG0348	domain, Protein
HHJ56_10460	COG0437	4 iron, 4 sulfur cluster binding
HHJ56_10465	COG0243	molybdopterin cofactor binding
HHJ56_10470	COG3062	negative regulation of establishment of protein localization
HHJ56_10475	COG3850	Histidine kinase
HHJ56_10490	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
HHJ56_10500	COG1040	competence protein
HHJ56_10505	COG2861	carbohydrate metabolic process
HHJ56_10510	COG4942	peptidase
HHJ56_10520	COG0425	Belongs to the sulfur carrier protein TusA family
HHJ56_10525	COG1739	Uncharacterized protein family UPF0029
HHJ56_10530	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
HHJ56_10535	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
HHJ56_10590	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
HHJ56_10610	COG0201	protein transport
HHJ56_10620	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
HHJ56_10625	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
HHJ56_10630	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
HHJ56_10635	COG0202	RNA polymerase activity
HHJ56_10640	COG0203	ribosomal protein L17
HHJ56_10650	COG2960	long-chain fatty acid transporting porin activity
HHJ56_10655	COG3172	ATPase kinase involved in NAD metabolism
HHJ56_10660	COG2129	metallophosphoesterase
HHJ56_10670	COG0582	viral genome integration into host DNA
HHJ56_10750	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
HHJ56_10765	COG0732	type I restriction modification DNA specificity domain
HHJ56_10770	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
HHJ56_10775	COG3056	Lipoprotein
HHJ56_10780	COG0271	Belongs to the BolA IbaG family
HHJ56_10795	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
HHJ56_10800	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
HHJ56_10805	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
HHJ56_10815	COG1477	protein flavinylation
HHJ56_10820	COG2991	Protein conserved in bacteria
HHJ56_10830	COG1519	Transferase
HHJ56_10840	COG0786	glutamate:sodium symporter activity
HHJ56_10870	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
HHJ56_10880	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
HHJ56_10885	COG3068	Protein conserved in bacteria
HHJ56_10895	COG1349	DNA-binding transcription factor activity
HHJ56_10900	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
HHJ56_10910	COG0259	pyridoxamine-phosphate oxidase activity
HHJ56_10915	COG2814	Major facilitator Superfamily
HHJ56_10920	COG1763	Mo-molybdopterin cofactor biosynthetic process
HHJ56_10925	COG3086	response to oxidative stress
HHJ56_10930	COG3026	antisigma factor binding
HHJ56_10935	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
HHJ56_10940	COG1595	DNA-templated transcription, initiation
HHJ56_10955	COG2226	methyltransferase
HHJ56_10980	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
HHJ56_10985	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
HHJ56_10990	COG0493	'glutamate synthase
HHJ56_10995	COG0069	glutamate synthase activity
HHJ56_10995	COG0067	glutamate synthase
HHJ56_10995	COG0070	glutamate synthase
HHJ56_11005	COG0859	PFAM glycosyl transferase family 9
HHJ56_11010	COG1132	(ABC) transporter
HHJ56_11020	COG0549	Belongs to the carbamate kinase family
HHJ56_11030	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
HHJ56_11040	COG1304	FMN binding
HHJ56_11045	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
HHJ56_11055	COG0583	DNA-binding transcription factor activity
HHJ56_11065	COG1304	FMN binding
HHJ56_11070	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
HHJ56_11075	COG0666	response to abiotic stimulus
HHJ56_11100	COG0675	Transposase, IS605 OrfB family
HHJ56_11110	COG1126	abc transporter atp-binding protein
HHJ56_11115	COG0765	amino acid transport
HHJ56_11120	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
HHJ56_11125	COG0635	Involved in the biosynthesis of porphyrin-containing compound
HHJ56_11135	COG3078	GTPase activator activity
HHJ56_11140	COG0564	pseudouridine synthase activity
HHJ56_11150	COG3201	nicotinamide mononucleotide transporter
HHJ56_11155	COG0673	inositol 2-dehydrogenase activity
HHJ56_11160	COG3676	manually curated
HHJ56_11170	COG3718	enzyme involved in inositol metabolism
HHJ56_11185	COG0456	acetyltransferase
HHJ56_11215	COG0738	Major facilitator superfamily
HHJ56_11220	COG0235	Class ii aldolase
HHJ56_11230	COG1070	Carbohydrate kinase
HHJ56_11235	COG2407	Converts the aldose L-fucose into the corresponding ketose L-fuculose
HHJ56_11240	COG1349	DNA-binding transcription factor activity
HHJ56_11250	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
HHJ56_11265	COG0859	PFAM glycosyl transferase family 9
HHJ56_11305	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
HHJ56_11320	COG3691	Protein conserved in bacteria
HHJ56_11325	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
HHJ56_11330	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
HHJ56_11335	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
HHJ56_11340	COG0363	glucosamine-6-phosphate deaminase activity
HHJ56_11345	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
HHJ56_11350	COG1218	3'(2'),5'-bisphosphate nucleotidase
HHJ56_11355	COG1297	OPT oligopeptide transporter protein
HHJ56_11360	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
HHJ56_11365	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
HHJ56_11370	COG1609	Transcriptional regulator
HHJ56_11375	COG1917	Cupin 2, conserved barrel domain protein
HHJ56_11385	COG1070	Carbohydrate kinase
HHJ56_11390	COG1129	ABC transporter
HHJ56_11395	COG1172	Belongs to the binding-protein-dependent transport system permease family
HHJ56_11400	COG1879	ABC-type sugar transport system periplasmic component
HHJ56_11415	COG0051	transcription antitermination factor activity, RNA binding
HHJ56_11425	COG0088	Forms part of the polypeptide exit tunnel
HHJ56_11435	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
HHJ56_11440	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
HHJ56_11450	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
HHJ56_11475	COG0582	viral genome integration into host DNA
HHJ56_11565	COG3728	DNA packaging
HHJ56_11640	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
HHJ56_11645	COG0594	ribonuclease P activity