locus-tag class description HHJ59_00005 PF08299 Bacterial dnaA protein helix-turn-helix HHJ59_00005 PF11638 DnaA N-terminal domain HHJ59_00005 PF00308 Bacterial dnaA protein HHJ59_00010 PF02767 DNA polymerase III beta subunit, central domain HHJ59_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HHJ59_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HHJ59_00015 PF02463 RecF/RecN/SMC N terminal domain HHJ59_00020 PF02592 Putative vitamin uptake transporter HHJ59_00025 PF02565 Recombination protein O C terminal HHJ59_00025 PF11967 Recombination protein O N terminal HHJ59_00030 PF01938 TRAM domain HHJ59_00030 PF05958 tRNA (Uracil-5-)-methyltransferase HHJ59_00035 PF13291 ACT domain HHJ59_00035 PF02824 TGS domain HHJ59_00035 PF04607 Region found in RelA / SpoT proteins HHJ59_00040 PF01219 Prokaryotic diacylglycerol kinase HHJ59_00045 PF00710 Asparaginase, N-terminal HHJ59_00045 PF17763 Glutaminase/Asparaginase C-terminal domain HHJ59_00055 PF02152 Dihydroneopterin aldolase HHJ59_00060 PF02660 Glycerol-3-phosphate acyltransferase HHJ59_00065 PF01327 Polypeptide deformylase HHJ59_00070 PF17358 Family of unknown function (DUF5384) HHJ59_00075 PF05433 Glycine zipper 2TM domain HHJ59_00080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HHJ59_00080 PF00205 Thiamine pyrophosphate enzyme, central domain HHJ59_00080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HHJ59_00085 PF01261 Xylose isomerase-like TIM barrel HHJ59_00090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ59_00090 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ59_00095 PF05726 Pirin C-terminal cupin domain HHJ59_00095 PF02678 Pirin HHJ59_00100 PF03358 NADPH-dependent FMN reductase HHJ59_00105 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HHJ59_00105 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HHJ59_00105 PF02769 AIR synthase related protein, C-terminal domain HHJ59_00110 PF01472 PUA domain HHJ59_00110 PF00696 Amino acid kinase family HHJ59_00120 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HHJ59_00125 PF00005 ABC transporter HHJ59_00130 PF01061 ABC-2 type transporter HHJ59_00140 PF03951 Glutamine synthetase, beta-Grasp domain HHJ59_00140 PF00120 Glutamine synthetase, catalytic domain HHJ59_00150 PF02773 S-adenosylmethionine synthetase, C-terminal domain HHJ59_00150 PF02772 S-adenosylmethionine synthetase, central domain HHJ59_00150 PF00438 S-adenosylmethionine synthetase, N-terminal domain HHJ59_00155 PF00795 Carbon-nitrogen hydrolase HHJ59_00160 PF00571 CBS domain HHJ59_00160 PF03471 Transporter associated domain HHJ59_00165 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_00170 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_00175 PF00497 Bacterial extracellular solute-binding proteins, family 3 HHJ59_00180 PF00005 ABC transporter HHJ59_00185 PF01594 AI-2E family transporter HHJ59_00190 PF03960 ArsC family HHJ59_00195 PF03889 Alternative ribosome-rescue factor A HHJ59_00200 PF17347 Family of unknown function (DUF5377) HHJ59_00205 PF02978 Signal peptide binding domain HHJ59_00205 PF00448 SRP54-type protein, GTPase domain HHJ59_00205 PF02881 SRP54-type protein, helical bundle domain HHJ59_00210 PF01578 Cytochrome C assembly protein HHJ59_00215 PF01595 Cyclin M transmembrane N-terminal domain HHJ59_00215 PF00571 CBS domain HHJ59_00215 PF03471 Transporter associated domain HHJ59_00220 PF01618 MotA/TolQ/ExbB proton channel family HHJ59_00225 PF02472 Biopolymer transport protein ExbD/TolR HHJ59_00230 PF03544 Gram-negative bacterial TonB protein C-terminal HHJ59_00235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HHJ59_00235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HHJ59_00235 PF02378 Phosphotransferase system, EIIC HHJ59_00240 PF01232 Mannitol dehydrogenase Rossmann domain HHJ59_00240 PF08125 Mannitol dehydrogenase C-terminal domain HHJ59_00245 PF05068 Mannitol repressor HHJ59_00250 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HHJ59_00255 PF01367 5'-3' exonuclease, C-terminal SAM fold HHJ59_00255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HHJ59_00255 PF01612 3'-5' exonuclease HHJ59_00255 PF00476 DNA polymerase family A HHJ59_00260 PF02080 TrkA-C domain HHJ59_00260 PF03471 Transporter associated domain HHJ59_00260 PF00999 Sodium/hydrogen exchanger family HHJ59_00265 PF02028 BCCT, betaine/carnitine/choline family transporter HHJ59_00285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HHJ59_00285 PF05698 Bacterial trigger factor protein (TF) C-terminus HHJ59_00285 PF05697 Bacterial trigger factor protein (TF) HHJ59_00290 PF00574 Clp protease HHJ59_00295 PF10431 C-terminal, D2-small domain, of ClpB protein HHJ59_00295 PF07724 AAA domain (Cdc48 subfamily) HHJ59_00295 PF06689 ClpX C4-type zinc finger HHJ59_00300 PF10415 Fumarase C C-terminus HHJ59_00300 PF00206 Lyase HHJ59_00305 PF00501 AMP-binding enzyme HHJ59_00310 PF00583 Acetyltransferase (GNAT) family HHJ59_00315 PF03603 DNA polymerase III psi subunit HHJ59_00320 PF00004 ATPase family associated with various cellular activities (AAA) HHJ59_00320 PF10431 C-terminal, D2-small domain, of ClpB protein HHJ59_00320 PF07724 AAA domain (Cdc48 subfamily) HHJ59_00325 PF00227 Proteasome subunit HHJ59_00330 PF01040 UbiA prenyltransferase family HHJ59_00335 PF00581 Rhodanese-like domain HHJ59_00340 PF05525 Branched-chain amino acid transport protein HHJ59_00345 PF16921 Tex protein YqgF-like domain HHJ59_00345 PF00575 S1 RNA binding domain HHJ59_00345 PF09371 Tex-like protein N-terminal domain HHJ59_00345 PF17674 HHH domain HHJ59_00360 PF03449 Transcription elongation factor, N-terminal HHJ59_00360 PF01272 Transcription elongation factor, GreA/GreB, C-term HHJ59_00370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HHJ59_00375 PF00873 AcrB/AcrD/AcrF family HHJ59_00380 PF03932 CutC family HHJ59_00385 PF02378 Phosphotransferase system, EIIC HHJ59_00390 PF01112 Asparaginase HHJ59_00395 PF00883 Cytosol aminopeptidase family, catalytic domain HHJ59_00395 PF02789 Cytosol aminopeptidase family, N-terminal domain HHJ59_00400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HHJ59_00405 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HHJ59_00415 PF00113 Enolase, C-terminal TIM barrel domain HHJ59_00415 PF03952 Enolase, N-terminal domain HHJ59_00420 PF07119 Protein of unknown function (DUF1375) HHJ59_00425 PF00580 UvrD/REP helicase N-terminal domain HHJ59_00425 PF13361 UvrD-like helicase C-terminal domain HHJ59_00440 PF00186 Dihydrofolate reductase HHJ59_00445 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HHJ59_00445 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HHJ59_00460 PF01207 Dihydrouridine synthase (Dus) HHJ59_00470 PF01048 Phosphorylase superfamily HHJ59_00475 PF01676 Metalloenzyme superfamily HHJ59_00480 PF07670 Nucleoside recognition HHJ59_00480 PF07662 Na+ dependent nucleoside transporter C-terminus HHJ59_00480 PF01773 Na+ dependent nucleoside transporter N-terminus HHJ59_00485 PF17283 SprT-like zinc ribbon domain HHJ59_00485 PF10263 SprT-like family HHJ59_00490 PF02462 Opacity family porin protein HHJ59_00495 PF00183 Hsp90 protein HHJ59_00495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ59_00505 PF01648 4'-phosphopantetheinyl transferase superfamily HHJ59_00510 PF01145 SPFH domain / Band 7 family HHJ59_00515 PF01145 SPFH domain / Band 7 family HHJ59_00525 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HHJ59_00530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HHJ59_00530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HHJ59_00535 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) HHJ59_00535 PF04851 Type III restriction enzyme, res subunit HHJ59_00535 PF00271 Helicase conserved C-terminal domain HHJ59_00535 PF08463 EcoEI R protein C-terminal HHJ59_00540 PF02618 YceG-like family HHJ59_00545 PF02223 Thymidylate kinase HHJ59_00550 PF09115 DNA polymerase III, delta subunit, C terminal HHJ59_00555 PF01026 TatD related DNase HHJ59_00560 PF07509 Protein of unknown function (DUF1523) HHJ59_00565 PF01595 Cyclin M transmembrane N-terminal domain HHJ59_00565 PF00571 CBS domain HHJ59_00565 PF03471 Transporter associated domain HHJ59_00570 PF01197 Ribosomal protein L31 HHJ59_00575 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HHJ59_00575 PF00270 DEAD/DEAH box helicase HHJ59_00575 PF17764 3′ DNA-binding domain (3′BD) HHJ59_00575 PF00271 Helicase conserved C-terminal domain HHJ59_00575 PF18074 Primosomal protein N C-terminal domain HHJ59_00580 PF05036 Sporulation related domain HHJ59_00585 PF00174 Oxidoreductase molybdopterin binding domain HHJ59_00590 PF01794 Ferric reductase like transmembrane component HHJ59_00595 PF05958 tRNA (Uracil-5-)-methyltransferase HHJ59_00600 PF00933 Glycosyl hydrolase family 3 N terminal domain HHJ59_00610 PF01230 HIT domain HHJ59_00615 PF01226 Formate/nitrite transporter HHJ59_00620 PF01228 Glycine radical HHJ59_00620 PF02901 Pyruvate formate lyase-like HHJ59_00625 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HHJ59_00630 PF04055 Radical SAM superfamily HHJ59_00640 PF01263 Aldose 1-epimerase HHJ59_00645 PF08544 GHMP kinases C terminal HHJ59_00645 PF00288 GHMP kinases N terminal domain HHJ59_00645 PF10509 Galactokinase galactose-binding signature HHJ59_00650 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HHJ59_00650 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HHJ59_00655 PF13407 Periplasmic binding protein domain HHJ59_00660 PF00005 ABC transporter HHJ59_00665 PF02653 Branched-chain amino acid transport system / permease component HHJ59_00670 PF03918 Cytochrome C biogenesis protein HHJ59_00675 PF03918 Cytochrome C biogenesis protein HHJ59_00680 PF08534 Redoxin HHJ59_00685 PF01578 Cytochrome C assembly protein HHJ59_00685 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HHJ59_00690 PF03100 CcmE HHJ59_00695 PF04995 Heme exporter protein D (CcmD) HHJ59_00700 PF01578 Cytochrome C assembly protein HHJ59_00705 PF03379 CcmB protein HHJ59_00710 PF00005 ABC transporter HHJ59_00715 PF00682 HMGL-like HHJ59_00715 PF08502 LeuA allosteric (dimerisation) domain HHJ59_00720 PF00180 Isocitrate/isopropylmalate dehydrogenase HHJ59_00725 PF00330 Aconitase family (aconitate hydratase) HHJ59_00730 PF00694 Aconitase C-terminal domain HHJ59_00735 PF00308 Bacterial dnaA protein HHJ59_00740 PF00860 Permease family HHJ59_00750 PF04345 Chorismate lyase HHJ59_00755 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HHJ59_00755 PF01502 Phosphoribosyl-AMP cyclohydrolase HHJ59_00765 PF00977 Histidine biosynthesis protein HHJ59_00770 PF00977 Histidine biosynthesis protein HHJ59_00775 PF00578 AhpC/TSA family HHJ59_00780 PF00117 Glutamine amidotransferase class-I HHJ59_00785 PF17761 DUF1016 N-terminal domain HHJ59_00785 PF06250 YhcG PDDEXK nuclease domain HHJ59_00790 PF00475 Imidazoleglycerol-phosphate dehydratase HHJ59_00795 PF00155 Aminotransferase class I and II HHJ59_00805 PF00815 Histidinol dehydrogenase HHJ59_00810 PF01634 ATP phosphoribosyltransferase HHJ59_00810 PF08029 HisG, C-terminal domain HHJ59_00815 PF08241 Methyltransferase domain HHJ59_00820 PF03222 Tryptophan/tyrosine permease family HHJ59_00825 PF00719 Inorganic pyrophosphatase HHJ59_00830 PF07720 Tetratricopeptide repeat HHJ59_00830 PF01435 Peptidase family M48 HHJ59_00840 PF01476 LysM domain HHJ59_00840 PF01551 Peptidase family M23 HHJ59_00850 PF09335 SNARE associated Golgi protein HHJ59_00855 PF01975 Survival protein SurE HHJ59_00860 PF01142 tRNA pseudouridine synthase D (TruD) HHJ59_00865 PF02542 YgbB family HHJ59_00875 PF13419 Haloacid dehalogenase-like hydrolase HHJ59_00880 PF14602 Hexapeptide repeat of succinyl-transferase HHJ59_00880 PF12464 Maltose acetyltransferase HHJ59_00890 PF02664 S-Ribosylhomocysteinase (LuxS) HHJ59_00895 PF06969 HemN C-terminal domain HHJ59_00895 PF04055 Radical SAM superfamily HHJ59_00900 PF01725 Ham1 family HHJ59_00910 PF00860 Permease family HHJ59_00920 PF01370 NAD dependent epimerase/dehydratase family HHJ59_00925 PF07690 Major Facilitator Superfamily HHJ59_00930 PF01758 Sodium Bile acid symporter family HHJ59_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ59_00935 PF01627 Hpt domain HHJ59_00935 PF18415 Histidine kinase receptor ArcB trans-membrane domain HHJ59_00935 PF00512 His Kinase A (phospho-acceptor) domain HHJ59_00935 PF00989 PAS fold HHJ59_00935 PF00072 Response regulator receiver domain HHJ59_00940 PF01176 Translation initiation factor 1A / IF-1 HHJ59_00950 PF12404 Peptidase HHJ59_00950 PF00883 Cytosol aminopeptidase family, catalytic domain HHJ59_00955 PF00334 Nucleoside diphosphate kinase HHJ59_00960 PF00365 Phosphofructokinase HHJ59_00965 PF16916 Dimerisation domain of Zinc Transporter HHJ59_00965 PF01545 Cation efflux family HHJ59_00975 PF03883 Peroxide stress protein YaaA HHJ59_00980 PF03167 Uracil DNA glycosylase superfamily HHJ59_00985 PF01228 Glycine radical HHJ59_00990 PF06421 GTP-binding protein LepA C-terminus HHJ59_00990 PF00679 Elongation factor G C-terminus HHJ59_00990 PF00009 Elongation factor Tu GTP binding domain HHJ59_00990 PF03144 Elongation factor Tu domain 2 HHJ59_00995 PF10502 Signal peptidase, peptidase S26 HHJ59_01000 PF00035 Double-stranded RNA binding motif HHJ59_01000 PF14622 Ribonuclease-III-like HHJ59_01005 PF07650 KH domain HHJ59_01005 PF01926 50S ribosome-binding GTPase HHJ59_01010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HHJ59_01010 PF01926 50S ribosome-binding GTPase HHJ59_01015 PF08461 Ribonuclease R winged-helix domain HHJ59_01015 PF08206 Ribonuclease B OB domain HHJ59_01015 PF00773 RNB domain HHJ59_01015 PF00575 S1 RNA binding domain HHJ59_01015 PF17876 Cold shock domain HHJ59_01020 PF08032 RNA 2'-O ribose methyltransferase substrate binding HHJ59_01020 PF00588 SpoU rRNA Methylase family HHJ59_01025 PF07690 Major Facilitator Superfamily HHJ59_01030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HHJ59_01030 PF00529 HlyD membrane-fusion protein of T1SS HHJ59_01035 PF01047 MarR family HHJ59_01045 PF05658 Head domain of trimeric autotransporter adhesin HHJ59_01045 PF03895 YadA-like membrane anchor domain HHJ59_01045 PF05662 Coiled stalk of trimeric autotransporter adhesin HHJ59_01050 PF01047 MarR family HHJ59_01055 PF03601 Conserved hypothetical protein 698 HHJ59_01060 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HHJ59_01060 PF17287 POTRA domain HHJ59_01060 PF08479 POTRA domain, ShlB-type HHJ59_01065 PF13018 Extended Signal Peptide of Type V secretion system HHJ59_01065 PF04829 Pre-toxin domain with VENN motif HHJ59_01065 PF05860 haemagglutination activity domain HHJ59_01065 PF13332 Hemagglutinin repeat HHJ59_01065 PF13332 Hemagglutinin repeat HHJ59_01065 PF13018 Extended Signal Peptide of Type V secretion system HHJ59_01065 PF04829 Pre-toxin domain with VENN motif HHJ59_01065 PF05860 haemagglutination activity domain HHJ59_01075 PF00545 ribonuclease HHJ59_01100 PF00545 ribonuclease HHJ59_01165 PF01926 50S ribosome-binding GTPase HHJ59_01165 PF01018 GTP1/OBG HHJ59_01170 PF00892 EamA-like transporter family HHJ59_01175 PF01016 Ribosomal L27 protein HHJ59_01180 PF00829 Ribosomal prokaryotic L21 protein HHJ59_01185 PF00348 Polyprenyl synthetase HHJ59_01190 PF02677 Epoxyqueuosine reductase QueH HHJ59_01195 PF00085 Thioredoxin HHJ59_01200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HHJ59_01200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HHJ59_01205 PF01053 Cys/Met metabolism PLP-dependent enzyme HHJ59_01225 PF00589 Phage integrase family HHJ59_01270 PF04381 Putative exonuclease, RdgC HHJ59_01285 PF00436 Single-strand binding protein family HHJ59_01335 PF07411 Domain of unknown function (DUF1508) HHJ59_01340 PF05973 Phage derived protein Gp49-like (DUF891) HHJ59_01345 PF01381 Helix-turn-helix HHJ59_01360 PF00717 Peptidase S24-like HHJ59_01360 PF01726 LexA DNA binding domain HHJ59_01400 PF07102 Protein of unknown function (DUF1364) HHJ59_01425 PF07411 Domain of unknown function (DUF1508) HHJ59_01530 PF00436 Single-strand binding protein family HHJ59_01555 PF02498 BRO family, N-terminal domain HHJ59_01555 PF10548 P22AR C-terminal domain HHJ59_01565 PF00589 Phage integrase family HHJ59_01575 PF00749 tRNA synthetases class I (E and Q), catalytic domain HHJ59_01585 PF02091 Glycyl-tRNA synthetase alpha subunit HHJ59_01600 PF06250 YhcG PDDEXK nuclease domain HHJ59_01600 PF17761 DUF1016 N-terminal domain HHJ59_01605 PF04480 Protein of unknown function (DUF559) HHJ59_01615 PF05746 DALR anticodon binding domain HHJ59_01615 PF02092 Glycyl-tRNA synthetase beta subunit HHJ59_01620 PF02082 Transcriptional regulator HHJ59_01625 PF00175 Oxidoreductase NAD-binding domain HHJ59_01625 PF00970 Oxidoreductase FAD-binding domain HHJ59_01625 PF00042 Globin HHJ59_01630 PF12762 ISXO2-like transposase domain HHJ59_01635 PF00912 Transglycosylase HHJ59_01635 PF17092 Penicillin-binding protein OB-like domain HHJ59_01635 PF00905 Penicillin binding protein transpeptidase domain HHJ59_01640 PF11104 Type IV pilus assembly protein PilM; HHJ59_01660 PF03958 Bacterial type II/III secretion system short domain HHJ59_01660 PF00263 Bacterial type II and III secretion system protein HHJ59_01665 PF01202 Shikimate kinase HHJ59_01670 PF01761 3-dehydroquinate synthase HHJ59_01675 PF02086 D12 class N6 adenine-specific DNA methyltransferase HHJ59_01680 PF05258 Dna[CI] antecedent, DciA HHJ59_01685 PF10818 Protein of unknown function (DUF2547) HHJ59_01690 PF01043 SecA preprotein cross-linking domain HHJ59_01690 PF07516 SecA Wing and Scaffold domain HHJ59_01690 PF02810 SEC-C motif HHJ59_01690 PF07517 SecA DEAD-like domain HHJ59_01695 PF00293 NUDIX domain HHJ59_01700 PF03461 TRCF domain HHJ59_01700 PF17757 UvrB interaction domain HHJ59_01700 PF00270 DEAD/DEAH box helicase HHJ59_01700 PF00271 Helicase conserved C-terminal domain HHJ59_01700 PF02559 CarD-like/TRCF domain HHJ59_01710 PF13580 SIS domain HHJ59_01715 PF01464 Transglycosylase SLT domain HHJ59_01715 PF00497 Bacterial extracellular solute-binding proteins, family 3 HHJ59_01725 PF00589 Phage integrase family HHJ59_01725 PF13356 Arm DNA-binding domain HHJ59_01755 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HHJ59_01815 PF00166 Chaperonin 10 Kd subunit HHJ59_01820 PF00118 TCP-1/cpn60 chaperonin family HHJ59_01825 PF00291 Pyridoxal-phosphate dependent enzyme HHJ59_01835 PF04354 ZipA, C-terminal FtsZ-binding domain HHJ59_01840 PF00533 BRCA1 C Terminus (BRCT) domain HHJ59_01840 PF01653 NAD-dependent DNA ligase adenylation domain HHJ59_01840 PF03120 NAD-dependent DNA ligase OB-fold domain HHJ59_01840 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HHJ59_01840 PF12826 Helix-hairpin-helix motif HHJ59_01845 PF03477 ATP cone domain HHJ59_01845 PF13597 Anaerobic ribonucleoside-triphosphate reductase HHJ59_01855 PF01026 TatD related DNase HHJ59_01860 PF00490 Delta-aminolevulinic acid dehydratase HHJ59_01865 PF00902 Sec-independent protein translocase protein (TatC) HHJ59_01875 PF02416 mttA/Hcf106 family HHJ59_01880 PF03109 ABC1 family HHJ59_01885 PF02036 SCP-2 sterol transfer family HHJ59_01890 PF01209 ubiE/COQ5 methyltransferase family HHJ59_01895 PF00939 Sodium:sulfate symporter transmembrane region HHJ59_01900 PF03737 Aldolase/RraA HHJ59_01905 PF01040 UbiA prenyltransferase family HHJ59_01910 PF18389 TrmO C-terminal domain HHJ59_01910 PF01980 tRNA-methyltransferase O HHJ59_01915 PF00230 Major intrinsic protein HHJ59_01920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ59_01920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ59_01925 PF00589 Phage integrase family HHJ59_01925 PF02899 Phage integrase, N-terminal SAM-like domain HHJ59_01930 PF01812 5-formyltetrahydrofolate cyclo-ligase family HHJ59_01940 PF05164 Cell division protein ZapA HHJ59_01945 PF03695 Uncharacterised protein family (UPF0149) HHJ59_01950 PF05195 Aminopeptidase P, N-terminal domain HHJ59_01950 PF00557 Metallopeptidase family M24 HHJ59_01955 PF01494 FAD binding domain HHJ59_01960 PF01494 FAD binding domain HHJ59_01965 PF13407 Periplasmic binding protein domain HHJ59_01970 PF13407 Periplasmic binding protein domain HHJ59_01975 PF00005 ABC transporter HHJ59_01980 PF02653 Branched-chain amino acid transport system / permease component HHJ59_01985 PF13545 Crp-like helix-turn-helix domain HHJ59_01985 PF00027 Cyclic nucleotide-binding domain HHJ59_01990 PF06794 Uncharacterised protein family (UPF0270) HHJ59_01995 PF00440 Bacterial regulatory proteins, tetR family HHJ59_02000 PF00692 dUTPase HHJ59_02005 PF02441 Flavoprotein HHJ59_02005 PF04127 DNA / pantothenate metabolism flavoprotein HHJ59_02010 PF04002 RadC-like JAB domain HHJ59_02015 PF00830 Ribosomal L28 family HHJ59_02020 PF00471 Ribosomal protein L33 HHJ59_02025 PF06827 Zinc finger found in FPG and IleRS HHJ59_02025 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HHJ59_02025 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HHJ59_02030 PF00701 Dihydrodipicolinate synthetase family HHJ59_02035 PF01418 Helix-turn-helix domain, rpiR family HHJ59_02035 PF01380 SIS domain HHJ59_02040 PF04074 YhcH/YjgK/YiaL HHJ59_02045 PF00480 ROK family HHJ59_02050 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HHJ59_02055 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HHJ59_02055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HHJ59_02060 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HHJ59_02065 PF09190 DALR domain HHJ59_02065 PF01406 tRNA synthetases class I (C) catalytic domain HHJ59_02070 PF05860 haemagglutination activity domain HHJ59_02075 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HHJ59_02075 PF08479 POTRA domain, ShlB-type HHJ59_02080 PF00593 TonB dependent receptor HHJ59_02080 PF07715 TonB-dependent Receptor Plug Domain HHJ59_02085 PF06228 Haem utilisation ChuX/HutX HHJ59_02090 PF01243 Pyridoxamine 5'-phosphate oxidase HHJ59_02095 PF04093 rod shape-determining protein MreD HHJ59_02100 PF04085 rod shape-determining protein MreC HHJ59_02110 PF17760 UvrA interaction domain HHJ59_02110 PF17755 UvrA DNA-binding domain HHJ59_02115 PF00436 Single-strand binding protein family HHJ59_02140 PF02129 X-Pro dipeptidyl-peptidase (S15 family) HHJ59_02175 PF00248 Aldo/keto reductase family HHJ59_02180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_02180 PF03466 LysR substrate binding domain HHJ59_02185 PF03605 Anaerobic c4-dicarboxylate membrane transporter HHJ59_02195 PF00550 Phosphopantetheine attachment site HHJ59_02205 PF00698 Acyl transferase domain HHJ59_02210 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HHJ59_02210 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HHJ59_02215 PF02504 Fatty acid synthesis protein HHJ59_02220 PF01783 Ribosomal L32p protein family HHJ59_02225 PF02620 Large ribosomal RNA subunit accumulation protein YceD HHJ59_02235 PF08241 Methyltransferase domain HHJ59_02240 PF04301 Protein of unknown function (DUF452) HHJ59_02245 PF00155 Aminotransferase class I and II HHJ59_02250 PF00202 Aminotransferase class-III HHJ59_02265 PF02666 Phosphatidylserine decarboxylase HHJ59_02270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HHJ59_02270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HHJ59_02275 PF12762 ISXO2-like transposase domain HHJ59_02280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HHJ59_02280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HHJ59_02285 PF00625 Guanylate kinase HHJ59_02290 PF01192 RNA polymerase Rpb6 HHJ59_02295 PF02824 TGS domain HHJ59_02295 PF04607 Region found in RelA / SpoT proteins HHJ59_02295 PF13291 ACT domain HHJ59_02300 PF00271 Helicase conserved C-terminal domain HHJ59_02300 PF17191 RecG wedge domain HHJ59_02300 PF00270 DEAD/DEAH box helicase HHJ59_02305 PF01177 Asp/Glu/Hydantoin racemase HHJ59_02335 PF08239 Bacterial SH3 domain HHJ59_02340 PF12627 Probable RNA and SrmB- binding site of polymerase A HHJ59_02340 PF01966 HD domain HHJ59_02340 PF01743 Poly A polymerase head domain HHJ59_02345 PF08942 Domain of unknown function (DUF1919) HHJ59_02350 PF02682 Carboxyltransferase domain, subdomain C and D HHJ59_02355 PF02626 Carboxyltransferase domain, subdomain A and B HHJ59_02360 PF03746 LamB/YcsF family HHJ59_02365 PF01566 Natural resistance-associated macrophage protein HHJ59_02375 PF13419 Haloacid dehalogenase-like hydrolase HHJ59_02380 PF02219 Methylenetetrahydrofolate reductase HHJ59_02390 PF03372 Endonuclease/Exonuclease/phosphatase family HHJ59_02395 PF00196 Bacterial regulatory proteins, luxR family HHJ59_02395 PF00072 Response regulator receiver domain HHJ59_02400 PF02525 Flavodoxin-like fold HHJ59_02405 PF01343 Peptidase family S49 HHJ59_02405 PF08496 Peptidase family S49 N-terminal HHJ59_02415 PF00149 Calcineurin-like phosphoesterase HHJ59_02420 PF00317 Ribonucleotide reductase, all-alpha domain HHJ59_02420 PF03477 ATP cone domain HHJ59_02420 PF02867 Ribonucleotide reductase, barrel domain HHJ59_02425 PF06965 Na+/H+ antiporter 1 HHJ59_02430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HHJ59_02435 PF00578 AhpC/TSA family HHJ59_02440 PF13307 Helicase C-terminal domain HHJ59_02440 PF06733 DEAD_2 HHJ59_02445 PF00814 Glycoprotease family HHJ59_02450 PF00501 AMP-binding enzyme HHJ59_02450 PF13193 AMP-binding enzyme C-terminal domain HHJ59_02455 PF00570 HRDC domain HHJ59_02455 PF01612 3'-5' exonuclease HHJ59_02470 PF00005 ABC transporter HHJ59_02470 PF00664 ABC transporter transmembrane region HHJ59_02475 PF00005 ABC transporter HHJ59_02475 PF00664 ABC transporter transmembrane region HHJ59_02480 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ59_02490 PF02447 GntP family permease HHJ59_02495 PF01202 Shikimate kinase HHJ59_02505 PF00209 Sodium:neurotransmitter symporter family HHJ59_02510 PF10576 Iron-sulfur binding domain of endonuclease III HHJ59_02510 PF00633 Helix-hairpin-helix motif HHJ59_02510 PF00730 HhH-GPD superfamily base excision DNA repair protein HHJ59_02515 PF02508 Rnf-Nqr subunit, membrane protein HHJ59_02520 PF04205 FMN-binding domain HHJ59_02525 PF03116 NQR2, RnfD, RnfE family HHJ59_02530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HHJ59_02530 PF13237 4Fe-4S dicluster domain HHJ59_02530 PF13375 RnfC Barrel sandwich hybrid domain HHJ59_02535 PF04060 Putative Fe-S cluster HHJ59_02540 PF02508 Rnf-Nqr subunit, membrane protein HHJ59_02545 PF08338 Domain of unknown function (DUF1731) HHJ59_02545 PF01370 NAD dependent epimerase/dehydratase family HHJ59_02550 PF01316 Arginine repressor, DNA binding domain HHJ59_02550 PF02863 Arginine repressor, C-terminal domain HHJ59_02555 PF00056 lactate/malate dehydrogenase, NAD binding domain HHJ59_02555 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HHJ59_02570 PF00571 CBS domain HHJ59_02570 PF01380 SIS domain HHJ59_02580 PF05175 Methyltransferase small domain HHJ59_02585 PF01713 Smr domain HHJ59_02590 PF01416 tRNA pseudouridine synthase HHJ59_02595 PF01039 Carboxyl transferase domain HHJ59_02595 PF17848 Acetyl-coA carboxylase zinc finger domain HHJ59_02600 PF08245 Mur ligase middle domain HHJ59_02605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HHJ59_02605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HHJ59_02610 PF03701 Uncharacterised protein family (UPF0181) HHJ59_02615 PF00313 'Cold-shock' DNA-binding domain HHJ59_02630 PF00356 Bacterial regulatory proteins, lacI family HHJ59_02630 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HHJ59_02635 PF00586 AIR synthase related protein, N-terminal domain HHJ59_02635 PF02769 AIR synthase related protein, C-terminal domain HHJ59_02640 PF06303 MatP N-terminal domain HHJ59_02640 PF17414 MatP C-terminal ribbon-helix-helix domain HHJ59_02645 PF13654 AAA domain HHJ59_02645 PF05362 Lon protease (S16) C-terminal proteolytic domain HHJ59_02650 PF07977 FabA-like domain HHJ59_02655 PF04073 Aminoacyl-tRNA editing domain HHJ59_02665 PF00860 Permease family HHJ59_02670 PF02635 DsrE/DsrF-like family HHJ59_02675 PF12705 PD-(D/E)XK nuclease superfamily HHJ59_02675 PF00580 UvrD/REP helicase N-terminal domain HHJ59_02675 PF13361 UvrD-like helicase C-terminal domain HHJ59_02680 PF13538 UvrD-like helicase C-terminal domain HHJ59_02685 PF13018 Extended Signal Peptide of Type V secretion system HHJ59_02685 PF03895 YadA-like membrane anchor domain HHJ59_02685 PF05662 Coiled stalk of trimeric autotransporter adhesin HHJ59_02685 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin HHJ59_02690 PF00152 tRNA synthetases class II (D, K and N) HHJ59_02690 PF01336 OB-fold nucleic acid binding domain HHJ59_02695 PF01047 MarR family HHJ59_02695 PF00480 ROK family HHJ59_02705 PF00551 Formyl transferase HHJ59_02705 PF01842 ACT domain HHJ59_02710 PF00300 Histidine phosphatase superfamily (branch 1) HHJ59_02715 PF13091 PLD-like domain HHJ59_02715 PF13396 Phospholipase_D-nuclease N-terminal HHJ59_02720 PF00849 RNA pseudouridylate synthase HHJ59_02725 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HHJ59_02725 PF01409 tRNA synthetases class II core domain (F) HHJ59_02730 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HHJ59_02730 PF01588 Putative tRNA binding domain HHJ59_02730 PF03147 Ferredoxin-fold anticodon binding domain HHJ59_02730 PF03484 tRNA synthetase B5 domain HHJ59_02730 PF03483 B3/4 domain HHJ59_02735 PF00216 Bacterial DNA-binding protein HHJ59_02740 PF00877 NlpC/P60 family HHJ59_02745 PF03797 Autotransporter beta-domain HHJ59_02750 PF01171 PP-loop family HHJ59_02755 PF03882 MukF winged-helix domain HHJ59_02755 PF17193 MukF C-terminal domain HHJ59_02755 PF17192 MukF middle domain HHJ59_02760 PF04288 MukE-like family HHJ59_02765 PF16330 MukB hinge domain HHJ59_02765 PF04310 MukB N-terminal HHJ59_02775 PF08411 Exonuclease C-terminal HHJ59_02775 PF00929 Exonuclease HHJ59_02790 PF12762 ISXO2-like transposase domain HHJ59_02795 PF04386 Stringent starvation protein B HHJ59_02800 PF13417 Glutathione S-transferase, N-terminal domain HHJ59_02800 PF00043 Glutathione S-transferase, C-terminal domain HHJ59_02805 PF00380 Ribosomal protein S9/S16 HHJ59_02810 PF00572 Ribosomal protein L13 HHJ59_02815 PF00849 RNA pseudouridylate synthase HHJ59_02820 PF04287 tRNA pseudouridine synthase C HHJ59_02825 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HHJ59_02835 PF14489 QueF-like protein HHJ59_02835 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HHJ59_02840 PF03641 Possible lysine decarboxylase HHJ59_02840 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HHJ59_02840 PF11892 Domain of unknown function (DUF3412) HHJ59_02845 PF08681 Protein of unknown function (DUF1778) HHJ59_02855 PF00535 Glycosyl transferase family 2 HHJ59_02860 PF01061 ABC-2 type transporter HHJ59_02865 PF00005 ABC transporter HHJ59_02870 PF04315 Elongation factor P hydroxylase HHJ59_02875 PF01435 Peptidase family M48 HHJ59_02880 PF00817 impB/mucB/samB family HHJ59_02880 PF11798 IMS family HHH motif HHJ59_02885 PF00343 Carbohydrate phosphorylase HHJ59_02890 PF08323 Starch synthase catalytic domain HHJ59_02890 PF00534 Glycosyl transferases group 1 HHJ59_02895 PF00483 Nucleotidyl transferase HHJ59_02900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HHJ59_02900 PF18390 Glycogen debranching enzyme C-terminal domain HHJ59_02900 PF00128 Alpha amylase, catalytic domain HHJ59_02905 PF00128 Alpha amylase, catalytic domain HHJ59_02905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HHJ59_02905 PF02806 Alpha amylase, C-terminal all-beta domain HHJ59_02910 PF02446 4-alpha-glucanotransferase HHJ59_02915 PF05656 Protein of unknown function (DUF805) HHJ59_02925 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HHJ59_02925 PF00749 tRNA synthetases class I (E and Q), catalytic domain HHJ59_02930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HHJ59_02935 PF00005 ABC transporter HHJ59_02935 PF02687 FtsX-like permease family HHJ59_02935 PF12704 MacB-like periplasmic core domain HHJ59_02940 PF02321 Outer membrane efflux protein HHJ59_02950 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ59_02950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HHJ59_02955 PF02817 e3 binding domain HHJ59_02955 PF00364 Biotin-requiring enzyme HHJ59_02955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HHJ59_02960 PF00456 Transketolase, thiamine diphosphate binding domain HHJ59_02960 PF17831 Pyruvate dehydrogenase E1 component middle domain HHJ59_02965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HHJ59_02970 PF02896 PEP-utilising enzyme, TIM barrel domain HHJ59_02970 PF05524 PEP-utilising enzyme, N-terminal HHJ59_02970 PF00391 PEP-utilising enzyme, mobile domain HHJ59_02975 PF00381 PTS HPr component phosphorylation site HHJ59_02980 PF03193 RsgA GTPase HHJ59_02985 PF00929 Exonuclease HHJ59_03000 PF00472 RF-1 domain HHJ59_03000 PF03462 PCRF domain HHJ59_03005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HHJ59_03005 PF02403 Seryl-tRNA synthetase N-terminal domain HHJ59_03010 PF16193 AAA C-terminal domain HHJ59_03010 PF12002 MgsA AAA+ ATPase C terminal HHJ59_03010 PF00004 ATPase family associated with various cellular activities (AAA) HHJ59_03025 PF03548 Outer membrane lipoprotein carrier protein LolA HHJ59_03030 PF01580 FtsK/SpoIIIE family HHJ59_03030 PF17854 FtsK alpha domain HHJ59_03030 PF09397 Ftsk gamma domain HHJ59_03030 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HHJ59_03035 PF01037 Lrp/AsnC ligand binding domain HHJ59_03040 PF13286 Phosphohydrolase-associated domain HHJ59_03040 PF01966 HD domain HHJ59_03045 PF04172 LrgB-like family HHJ59_03050 PF03788 LrgA family HHJ59_03055 PF00565 Staphylococcal nuclease homologue HHJ59_03060 PF00266 Aminotransferase class-V HHJ59_03065 PF02657 Fe-S metabolism associated domain HHJ59_03070 PF16036 Chalcone isomerase-like HHJ59_03075 PF05728 Uncharacterised protein family (UPF0227) HHJ59_03080 PF18030 RimK PreATP-grasp domain HHJ59_03080 PF08443 RimK-like ATP-grasp domain HHJ59_03085 PF00462 Glutaredoxin HHJ59_03090 PF00696 Amino acid kinase family HHJ59_03090 PF00583 Acetyltransferase (GNAT) family HHJ59_03095 PF00171 Aldehyde dehydrogenase family HHJ59_03100 PF01258 Prokaryotic dksA/traR C4-type zinc finger HHJ59_03105 PF12627 Probable RNA and SrmB- binding site of polymerase A HHJ59_03105 PF01743 Poly A polymerase head domain HHJ59_03105 PF12626 Polymerase A arginine-rich C-terminus HHJ59_03110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HHJ59_03115 PF02568 Thiamine biosynthesis protein (ThiI) HHJ59_03115 PF02926 THUMP domain HHJ59_03125 PF00348 Polyprenyl synthetase HHJ59_03130 PF02780 Transketolase, C-terminal domain HHJ59_03130 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HHJ59_03130 PF02779 Transketolase, pyrimidine binding domain HHJ59_03135 PF01985 CRS1 / YhbY (CRM) domain HHJ59_03140 PF01272 Transcription elongation factor, GreA/GreB, C-term HHJ59_03140 PF03449 Transcription elongation factor, N-terminal HHJ59_03145 PF03476 MOSC N-terminal beta barrel domain HHJ59_03145 PF00111 2Fe-2S iron-sulfur cluster binding domain HHJ59_03145 PF03473 MOSC domain HHJ59_03155 PF02153 Prephenate dehydrogenase HHJ59_03155 PF01817 Chorismate mutase type II HHJ59_03160 PF00793 DAHP synthetase I family HHJ59_03165 PF02811 PHP domain HHJ59_03170 PF01180 Dihydroorotate dehydrogenase HHJ59_03175 PF01433 Peptidase family M1 domain HHJ59_03175 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HHJ59_03175 PF11940 Domain of unknown function (DUF3458) Ig-like fold HHJ59_03180 PF00731 AIR carboxylase HHJ59_03225 PF02441 Flavoprotein HHJ59_03230 PF00156 Phosphoribosyl transferase domain HHJ59_03235 PF02674 Colicin V production protein HHJ59_03240 PF04217 Protein of unknown function, DUF412 HHJ59_03245 PF00871 Acetokinase family HHJ59_03250 PF01515 Phosphate acetyl/butaryl transferase HHJ59_03250 PF07085 DRTGG domain HHJ59_03260 PF13953 PapC C-terminal domain HHJ59_03260 PF13954 PapC N-terminal domain HHJ59_03260 PF00577 Outer membrane usher protein HHJ59_03265 PF02753 Pili assembly chaperone PapD, C-terminal domain HHJ59_03265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HHJ59_03270 PF16970 Type-1 fimbrial protein, A HHJ59_03275 PF05552 Conserved TM helix HHJ59_03275 PF00924 Mechanosensitive ion channel HHJ59_03280 PF03739 Lipopolysaccharide export system permease LptF/LptG HHJ59_03285 PF03739 Lipopolysaccharide export system permease LptF/LptG HHJ59_03290 PF02789 Cytosol aminopeptidase family, N-terminal domain HHJ59_03290 PF00883 Cytosol aminopeptidase family, catalytic domain HHJ59_03305 PF01488 Shikimate / quinate 5-dehydrogenase HHJ59_03305 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HHJ59_03305 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HHJ59_03310 PF16123 Hydroxyacylglutathione hydrolase C-terminus HHJ59_03310 PF00753 Metallo-beta-lactamase superfamily HHJ59_03315 PF08241 Methyltransferase domain HHJ59_03320 PF18381 YcaO cyclodehydratase C-terminal domain HHJ59_03320 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HHJ59_03325 PF06295 Protein of unknown function (DUF1043) HHJ59_03330 PF00268 Ribonucleotide reductase, small chain HHJ59_03345 PF00111 2Fe-2S iron-sulfur cluster binding domain HHJ59_03350 PF01113 Dihydrodipicolinate reductase, N-terminus HHJ59_03350 PF05173 Dihydrodipicolinate reductase, C-terminus HHJ59_03355 PF01810 LysE type translocator HHJ59_03360 PF04608 Phosphatidylglycerophosphatase A HHJ59_03365 PF02769 AIR synthase related protein, C-terminal domain HHJ59_03365 PF00586 AIR synthase related protein, N-terminal domain HHJ59_03370 PF01029 NusB family HHJ59_03375 PF00885 6,7-dimethyl-8-ribityllumazine synthase HHJ59_03380 PF03222 Tryptophan/tyrosine permease family HHJ59_03390 PF00300 Histidine phosphatase superfamily (branch 1) HHJ59_03395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HHJ59_03395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HHJ59_03395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HHJ59_03395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HHJ59_03400 PF00809 Pterin binding enzyme HHJ59_03410 PF13180 PDZ domain HHJ59_03415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HHJ59_03415 PF01872 RibD C-terminal domain HHJ59_03420 PF03477 ATP cone domain HHJ59_03425 PF03848 Tellurite resistance protein TehB HHJ59_03425 PF09313 Domain of unknown function (DUF1971) HHJ59_03455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HHJ59_03455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HHJ59_03455 PF02824 TGS domain HHJ59_03455 PF03129 Anticodon binding domain HHJ59_03460 PF13417 Glutathione S-transferase, N-terminal domain HHJ59_03460 PF04399 Glutaredoxin 2, C terminal domain HHJ59_03500 PF00589 Phage integrase family HHJ59_03500 PF13356 Arm DNA-binding domain HHJ59_03510 PF03881 Fructosamine kinase HHJ59_03520 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HHJ59_03525 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HHJ59_03530 PF17757 UvrB interaction domain HHJ59_03530 PF02151 UvrB/uvrC motif HHJ59_03530 PF04851 Type III restriction enzyme, res subunit HHJ59_03530 PF00271 Helicase conserved C-terminal domain HHJ59_03530 PF12344 Ultra-violet resistance protein B HHJ59_03540 PF01699 Sodium/calcium exchanger protein HHJ59_03545 PF03824 High-affinity nickel-transport protein HHJ59_03550 PF06226 Protein of unknown function (DUF1007) HHJ59_03555 PF12848 ABC transporter HHJ59_03555 PF00005 ABC transporter HHJ59_03560 PF07687 Peptidase dimerisation domain HHJ59_03560 PF01546 Peptidase family M20/M25/M40 HHJ59_03570 PF00356 Bacterial regulatory proteins, lacI family HHJ59_03575 PF00294 pfkB family carbohydrate kinase HHJ59_03580 PF01773 Na+ dependent nucleoside transporter N-terminus HHJ59_03580 PF07662 Na+ dependent nucleoside transporter C-terminus HHJ59_03580 PF07670 Nucleoside recognition HHJ59_03585 PF01156 Inosine-uridine preferring nucleoside hydrolase HHJ59_03590 PF00595 PDZ domain HHJ59_03595 PF01027 Inhibitor of apoptosis-promoting Bax1 HHJ59_03600 PF04358 DsrC like protein HHJ59_03605 PF01297 Zinc-uptake complex component A periplasmic HHJ59_03610 PF00005 ABC transporter HHJ59_03615 PF00950 ABC 3 transport family HHJ59_03620 PF00950 ABC 3 transport family HHJ59_03625 PF00561 alpha/beta hydrolase fold HHJ59_03630 PF02698 DUF218 domain HHJ59_03635 PF00356 Bacterial regulatory proteins, lacI family HHJ59_03635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HHJ59_03640 PF00793 DAHP synthetase I family HHJ59_03645 PF12704 MacB-like periplasmic core domain HHJ59_03645 PF02687 FtsX-like permease family HHJ59_03650 PF00005 ABC transporter HHJ59_03655 PF12704 MacB-like periplasmic core domain HHJ59_03655 PF02687 FtsX-like permease family HHJ59_03660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HHJ59_03660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HHJ59_03665 PF00793 DAHP synthetase I family HHJ59_03670 PF13369 Transglutaminase-like superfamily HHJ59_03675 PF17827 PrmC N-terminal domain HHJ59_03675 PF13847 Methyltransferase domain HHJ59_03680 PF17862 AAA+ lid domain HHJ59_03680 PF00004 ATPase family associated with various cellular activities (AAA) HHJ59_03680 PF06480 FtsH Extracellular HHJ59_03680 PF01434 Peptidase family M41 HHJ59_03685 PF01728 FtsJ-like methyltransferase HHJ59_03690 PF12805 FUSC-like inner membrane protein yccS HHJ59_03695 PF02142 MGS-like domain HHJ59_03700 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HHJ59_03705 PF02391 MoaE protein HHJ59_03710 PF02597 ThiS family HHJ59_03715 PF01967 MoaC family HHJ59_03720 PF06463 Molybdenum Cofactor Synthesis C HHJ59_03720 PF04055 Radical SAM superfamily HHJ59_03735 PF00577 Outer membrane usher protein HHJ59_03735 PF13954 PapC N-terminal domain HHJ59_03735 PF13953 PapC C-terminal domain HHJ59_03740 PF02753 Pili assembly chaperone PapD, C-terminal domain HHJ59_03740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HHJ59_03760 PF03062 MBOAT, membrane-bound O-acyltransferase family HHJ59_03765 PF01227 GTP cyclohydrolase I HHJ59_03770 PF00994 Probable molybdopterin binding domain HHJ59_03770 PF03454 MoeA C-terminal region (domain IV) HHJ59_03770 PF03453 MoeA N-terminal region (domain I and II) HHJ59_03775 PF00899 ThiF family HHJ59_03780 PF03956 Lysine exporter LysO HHJ59_03785 PF00210 Ferritin-like domain HHJ59_03790 PF00210 Ferritin-like domain HHJ59_03800 PF13545 Crp-like helix-turn-helix domain HHJ59_03800 PF00027 Cyclic nucleotide-binding domain HHJ59_03805 PF00582 Universal stress protein family HHJ59_03815 PF14602 Hexapeptide repeat of succinyl-transferase HHJ59_03815 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HHJ59_03815 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ59_03820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_03820 PF03466 LysR substrate binding domain HHJ59_03825 PF00849 RNA pseudouridylate synthase HHJ59_03825 PF01479 S4 domain HHJ59_03830 PF01300 Telomere recombination HHJ59_03835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HHJ59_03840 PF04348 LppC putative lipoprotein HHJ59_03845 PF02021 Uncharacterised protein family UPF0102 HHJ59_03850 PF13580 SIS domain HHJ59_03855 PF04972 BON domain HHJ59_03860 PF13361 UvrD-like helicase C-terminal domain HHJ59_03860 PF00580 UvrD/REP helicase N-terminal domain HHJ59_03875 PF18125 RlmM ferredoxin-like domain HHJ59_03875 PF01728 FtsJ-like methyltransferase HHJ59_03880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_03880 PF03466 LysR substrate binding domain HHJ59_03885 PF01063 Amino-transferase class IV HHJ59_03890 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin HHJ59_03890 PF05662 Coiled stalk of trimeric autotransporter adhesin HHJ59_03890 PF13018 Extended Signal Peptide of Type V secretion system HHJ59_03890 PF03895 YadA-like membrane anchor domain HHJ59_03900 PF03840 Preprotein translocase SecG subunit HHJ59_03905 PF01131 DNA topoisomerase HHJ59_03905 PF01751 Toprim domain HHJ59_03910 PF02575 YbaB/EbfC DNA-binding family HHJ59_03915 PF13662 Toprim domain HHJ59_03915 PF02132 RecR protein HHJ59_03920 PF01053 Cys/Met metabolism PLP-dependent enzyme HHJ59_03925 PF00578 AhpC/TSA family HHJ59_03925 PF10417 C-terminal domain of 1-Cys peroxiredoxin HHJ59_03930 PF05166 YcgL domain HHJ59_03935 PF01467 Cytidylyltransferase-like HHJ59_03935 PF00294 pfkB family carbohydrate kinase HHJ59_03940 PF03279 Bacterial lipid A biosynthesis acyltransferase HHJ59_03945 PF00753 Metallo-beta-lactamase superfamily HHJ59_03950 PF05951 Bacterial protein of unknown function (DUF882) HHJ59_03955 PF03734 L,D-transpeptidase catalytic domain HHJ59_03960 PF17804 Tail specific protease N-terminal domain HHJ59_03960 PF00595 PDZ domain HHJ59_03960 PF11818 C-terminal domain of tail specific protease (DUF3340) HHJ59_03960 PF03572 Peptidase family S41 HHJ59_03965 PF04352 ProQ/FINO family HHJ59_03965 PF17516 ProQ C-terminal domain HHJ59_03970 PF04403 Paraquat-inducible protein A HHJ59_03975 PF02470 MlaD protein HHJ59_03980 PF00204 DNA gyrase B HHJ59_03980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ59_03980 PF01751 Toprim domain HHJ59_03980 PF00986 DNA gyrase B subunit, carboxyl terminus HHJ59_03985 PF07732 Multicopper oxidase HHJ59_03990 PF00521 DNA gyrase/topoisomerase IV, subunit A HHJ59_03990 PF03989 DNA gyrase C-terminal domain, beta-propeller HHJ59_03995 PF11230 Protein of unknown function (DUF3029) HHJ59_04000 PF04055 Radical SAM superfamily HHJ59_04005 PF03783 Curli production assembly/transport component CsgG HHJ59_04015 PF05643 Putative bacterial lipoprotein (DUF799) HHJ59_04020 PF01396 Topoisomerase DNA binding C4 zinc finger HHJ59_04020 PF01751 Toprim domain HHJ59_04020 PF01131 DNA topoisomerase HHJ59_04020 PF08272 Topoisomerase I zinc-ribbon-like HHJ59_04025 PF03466 LysR substrate binding domain HHJ59_04025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_04030 PF01343 Peptidase family S49 HHJ59_04035 PF00881 Nitroreductase family HHJ59_04040 PF05726 Pirin C-terminal cupin domain HHJ59_04040 PF02678 Pirin HHJ59_04050 PF03466 LysR substrate binding domain HHJ59_04050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_04055 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HHJ59_04055 PF00056 lactate/malate dehydrogenase, NAD binding domain HHJ59_04060 PF10369 Small subunit of acetolactate synthase HHJ59_04065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HHJ59_04065 PF00205 Thiamine pyrophosphate enzyme, central domain HHJ59_04065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HHJ59_04070 PF03553 Na+/H+ antiporter family HHJ59_04075 PF00816 H-NS histone family HHJ59_04080 PF00575 S1 RNA binding domain HHJ59_04080 PF08206 Ribonuclease B OB domain HHJ59_04080 PF00773 RNB domain HHJ59_04090 PF01784 NIF3 (NGG1p interacting factor 3) HHJ59_04095 PF00356 Bacterial regulatory proteins, lacI family HHJ59_04100 PF00311 Phosphoenolpyruvate carboxylase HHJ59_04105 PF04055 Radical SAM superfamily HHJ59_04105 PF01938 TRAM domain HHJ59_04105 PF00919 Uncharacterized protein family UPF0004 HHJ59_04110 PF01494 FAD binding domain HHJ59_04135 PF00149 Calcineurin-like phosphoesterase HHJ59_04140 PF00293 NUDIX domain HHJ59_04145 PF06146 Phosphate-starvation-inducible E HHJ59_04150 PF02557 D-alanyl-D-alanine carboxypeptidase HHJ59_04155 PF07687 Peptidase dimerisation domain HHJ59_04155 PF01546 Peptidase family M20/M25/M40 HHJ59_04160 PF03960 ArsC family HHJ59_04165 PF02086 D12 class N6 adenine-specific DNA methyltransferase HHJ59_04170 PF05315 ICEA Protein HHJ59_04175 PF01555 DNA methylase HHJ59_04180 PF00291 Pyridoxal-phosphate dependent enzyme HHJ59_04180 PF14821 Threonine synthase N terminus HHJ59_04185 PF08544 GHMP kinases C terminal HHJ59_04185 PF00288 GHMP kinases N terminal domain HHJ59_04190 PF00742 Homoserine dehydrogenase HHJ59_04190 PF01842 ACT domain HHJ59_04190 PF13840 ACT domain HHJ59_04190 PF00696 Amino acid kinase family HHJ59_04190 PF03447 Homoserine dehydrogenase, NAD binding domain HHJ59_04195 PF01168 Alanine racemase, N-terminal domain HHJ59_04200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HHJ59_04205 PF00929 Exonuclease HHJ59_04210 PF13726 Na+-H+ antiporter family HHJ59_04210 PF03553 Na+/H+ antiporter family HHJ59_04215 PF00171 Aldehyde dehydrogenase family HHJ59_04215 PF01619 Proline dehydrogenase HHJ59_04215 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HHJ59_04215 PF14850 DNA-binding domain of Proline dehydrogenase HHJ59_04220 PF00474 Sodium:solute symporter family HHJ59_04225 PF02547 Queuosine biosynthesis protein HHJ59_04230 PF01702 Queuine tRNA-ribosyltransferase HHJ59_04235 PF01814 Hemerythrin HHE cation binding domain HHJ59_04240 PF02699 Preprotein translocase subunit HHJ59_04245 PF02355 Protein export membrane protein HHJ59_04245 PF07549 SecD/SecF GG Motif HHJ59_04245 PF13721 SecD export protein N-terminal TM region HHJ59_04250 PF02355 Protein export membrane protein HHJ59_04250 PF07549 SecD/SecF GG Motif HHJ59_04255 PF14718 Soluble lytic murein transglycosylase L domain HHJ59_04255 PF01464 Transglycosylase SLT domain HHJ59_04260 PF01371 Trp repressor protein HHJ59_04265 PF00912 Transglycosylase HHJ59_04270 PF00106 short chain dehydrogenase HHJ59_04275 PF12832 MFS_1 like family HHJ59_04300 PF13332 Hemagglutinin repeat HHJ59_04300 PF04829 Pre-toxin domain with VENN motif HHJ59_04300 PF05860 haemagglutination activity domain HHJ59_04300 PF13018 Extended Signal Peptide of Type V secretion system HHJ59_04325 PF01555 DNA methylase HHJ59_04335 PF03466 LysR substrate binding domain HHJ59_04335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_04340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ59_04340 PF00512 His Kinase A (phospho-acceptor) domain HHJ59_04340 PF08521 Two-component sensor kinase N-terminal HHJ59_04345 PF00486 Transcriptional regulatory protein, C terminal HHJ59_04345 PF00072 Response regulator receiver domain HHJ59_04350 PF03070 TENA/THI-4/PQQC family HHJ59_04365 PF01757 Acyltransferase family HHJ59_04375 PF02233 NAD(P) transhydrogenase beta subunit HHJ59_04380 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HHJ59_04380 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HHJ59_04380 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HHJ59_04385 PF03749 Sugar fermentation stimulation protein RE domain HHJ59_04385 PF17746 SfsA N-terminal OB domain HHJ59_04405 PF08666 SAF domain HHJ59_04405 PF03102 NeuB family HHJ59_04410 PF13472 GDSL-like Lipase/Acylhydrolase family HHJ59_04410 PF02348 Cytidylyltransferase HHJ59_04415 PF02350 UDP-N-acetylglucosamine 2-epimerase HHJ59_04420 PF00579 tRNA synthetases class I (W and Y) HHJ59_04420 PF01479 S4 domain HHJ59_04425 PF00294 pfkB family carbohydrate kinase HHJ59_04430 PF00251 Glycosyl hydrolases family 32 N-terminal domain HHJ59_04430 PF08244 Glycosyl hydrolases family 32 C terminal HHJ59_04445 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HHJ59_04450 PF01476 LysM domain HHJ59_04450 PF01520 N-acetylmuramoyl-L-alanine amidase HHJ59_04455 PF08676 MutL C terminal dimerisation domain HHJ59_04455 PF01119 DNA mismatch repair protein, C-terminal domain HHJ59_04465 PF17209 Hfq protein HHJ59_04470 PF13167 GTP-binding GTPase N-terminal HHJ59_04470 PF01926 50S ribosome-binding GTPase HHJ59_04470 PF16360 GTP-binding GTPase Middle Region HHJ59_04475 PF00860 Permease family HHJ59_04480 PF04269 Protein of unknown function, DUF440 HHJ59_04495 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HHJ59_04495 PF01926 50S ribosome-binding GTPase HHJ59_04505 PF03981 Ubiquinol-cytochrome C chaperone HHJ59_04505 PF13099 Domain of unknown function (DUF3944) HHJ59_04540 PF13280 WYL domain HHJ59_04540 PF08279 HTH domain HHJ59_04550 PF07445 Primosomal replication protein priC HHJ59_04555 PF17954 Quercetinase C-terminal cupin domain HHJ59_04555 PF02678 Pirin HHJ59_04560 PF13406 Transglycosylase SLT domain HHJ59_04565 PF00535 Glycosyl transferase family 2 HHJ59_04570 PF00535 Glycosyl transferase family 2 HHJ59_04580 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HHJ59_04590 PF04230 Polysaccharide pyruvyl transferase HHJ59_04595 PF02698 DUF218 domain HHJ59_04600 PF00109 Beta-ketoacyl synthase, N-terminal domain HHJ59_04600 PF02801 Beta-ketoacyl synthase, C-terminal domain HHJ59_04605 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HHJ59_04605 PF01266 FAD dependent oxidoreductase HHJ59_04610 PF09334 tRNA synthetases class I (M) HHJ59_04610 PF01588 Putative tRNA binding domain HHJ59_04615 PF10609 NUBPL iron-transfer P-loop NTPase HHJ59_04620 PF03239 Iron permease FTR1 family HHJ59_04625 PF10634 Fe2+ transport protein HHJ59_04635 PF00005 ABC transporter HHJ59_04635 PF02687 FtsX-like permease family HHJ59_04635 PF12704 MacB-like periplasmic core domain HHJ59_04645 PF00005 ABC transporter HHJ59_04650 PF01263 Aldose 1-epimerase HHJ59_04660 PF00152 tRNA synthetases class II (D, K and N) HHJ59_04660 PF01336 OB-fold nucleic acid binding domain HHJ59_04665 PF02661 Fic/DOC family HHJ59_04665 PF12728 Helix-turn-helix domain HHJ59_04675 PF10411 Disulfide bond isomerase protein N-terminus HHJ59_04675 PF13098 Thioredoxin-like domain HHJ59_04680 PF17768 RecJ OB domain HHJ59_04680 PF01368 DHH family HHJ59_04680 PF02272 DHHA1 domain HHJ59_04685 PF01048 Phosphorylase superfamily HHJ59_04690 PF01389 OmpA-like transmembrane domain HHJ59_04690 PF00691 OmpA family HHJ59_04695 PF03831 PhnA domain HHJ59_04695 PF08274 PhnA Zinc-Ribbon HHJ59_04700 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HHJ59_04705 PF00005 ABC transporter HHJ59_04715 PF01032 FecCD transport family HHJ59_04725 PF10670 Domain of unknown function (DUF4198) HHJ59_04730 PF07715 TonB-dependent Receptor Plug Domain HHJ59_04730 PF00593 TonB dependent receptor HHJ59_04735 PF00593 TonB dependent receptor HHJ59_04735 PF07715 TonB-dependent Receptor Plug Domain HHJ59_04740 PF03313 Serine dehydratase alpha chain HHJ59_04750 PF13309 HTH domain HHJ59_04750 PF08348 YheO-like PAS domain HHJ59_04760 PF02887 Pyruvate kinase, alpha/beta domain HHJ59_04760 PF00224 Pyruvate kinase, barrel domain HHJ59_04765 PF00881 Nitroreductase family HHJ59_04770 PF08543 Phosphomethylpyrimidine kinase HHJ59_04775 PF09179 TilS substrate binding domain HHJ59_04775 PF01171 PP-loop family HHJ59_04775 PF11734 TilS substrate C-terminal domain HHJ59_04780 PF02629 CoA binding domain HHJ59_04780 PF00549 CoA-ligase HHJ59_04785 PF08442 ATP-grasp domain HHJ59_04785 PF00549 CoA-ligase HHJ59_04790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HHJ59_04790 PF00364 Biotin-requiring enzyme HHJ59_04790 PF02817 e3 binding domain HHJ59_04795 PF00676 Dehydrogenase E1 component HHJ59_04795 PF16078 2-oxoglutarate dehydrogenase N-terminus HHJ59_04795 PF16870 2-oxoglutarate dehydrogenase C-terminal HHJ59_04795 PF02779 Transketolase, pyrimidine binding domain HHJ59_04800 PF00285 Citrate synthase, C-terminal domain HHJ59_04810 PF02525 Flavodoxin-like fold HHJ59_04820 PF01145 SPFH domain / Band 7 family HHJ59_04820 PF16200 C-terminal region of band_7 HHJ59_04845 PF01047 MarR family HHJ59_04845 PF00480 ROK family HHJ59_04850 PF01025 GrpE HHJ59_04855 PF01513 ATP-NAD kinase HHJ59_04860 PF02463 RecF/RecN/SMC N terminal domain HHJ59_04865 PF01250 Ribosomal protein S6 HHJ59_04870 PF00436 Single-strand binding protein family HHJ59_04875 PF01084 Ribosomal protein S18 HHJ59_04880 PF03948 Ribosomal protein L9, C-terminal domain HHJ59_04880 PF01281 Ribosomal protein L9, N-terminal domain HHJ59_04885 PF00202 Aminotransferase class-III HHJ59_04890 PF01523 Putative modulator of DNA gyrase HHJ59_04895 PF00575 S1 RNA binding domain HHJ59_04895 PF10150 Ribonuclease E/G family HHJ59_04900 PF08003 Protein of unknown function (DUF1698) HHJ59_04950 PF00953 Glycosyl transferase family 4 HHJ59_04955 PF00202 Aminotransferase class-III HHJ59_04960 PF08335 GlnD PII-uridylyltransferase HHJ59_04960 PF01966 HD domain HHJ59_04965 PF00557 Metallopeptidase family M24 HHJ59_04970 PF01521 Iron-sulphur cluster biosynthesis HHJ59_04975 PF06062 Uncharacterised protein family (UPF0231) HHJ59_04980 PF00912 Transglycosylase HHJ59_04980 PF00905 Penicillin binding protein transpeptidase domain HHJ59_04980 PF14814 Bifunctional transglycosylase second domain HHJ59_04990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HHJ59_04995 PF04304 Protein of unknown function (DUF454) HHJ59_05000 PF01432 Peptidase family M3 HHJ59_05005 PF00152 tRNA synthetases class II (D, K and N) HHJ59_05010 PF02910 Fumarate reductase flavoprotein C-term HHJ59_05010 PF00890 FAD binding domain HHJ59_05015 PF13085 2Fe-2S iron-sulfur cluster binding domain HHJ59_05015 PF13183 4Fe-4S dicluster domain HHJ59_05020 PF02300 Fumarate reductase subunit C HHJ59_05025 PF02313 Fumarate reductase subunit D HHJ59_05030 PF10672 S-adenosylmethionine-dependent methyltransferase HHJ59_05030 PF02926 THUMP domain HHJ59_05030 PF01170 Putative RNA methylase family UPF0020 HHJ59_05035 PF01297 Zinc-uptake complex component A periplasmic HHJ59_05040 PF00899 ThiF family HHJ59_05045 PF03562 MltA specific insert domain HHJ59_05045 PF06725 3D domain HHJ59_05060 PF00313 'Cold-shock' DNA-binding domain HHJ59_05065 PF01225 Mur ligase family, catalytic domain HHJ59_05065 PF02875 Mur ligase family, glutamate ligase domain HHJ59_05065 PF08245 Mur ligase middle domain HHJ59_05070 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HHJ59_05075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HHJ59_05080 PF01722 BolA-like protein HHJ59_05085 PF13466 STAS domain HHJ59_05090 PF05494 MlaC protein HHJ59_05095 PF02470 MlaD protein HHJ59_05100 PF02405 Permease MlaE HHJ59_05105 PF00005 ABC transporter HHJ59_05115 PF06835 Lipopolysaccharide-assembly, LptC-related HHJ59_05120 PF03968 OstA-like protein HHJ59_05125 PF12399 Branched-chain amino acid ATP-binding cassette transporter HHJ59_05125 PF00005 ABC transporter HHJ59_05130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HHJ59_05140 PF03786 D-mannonate dehydratase (UxuA) HHJ59_05145 PF07729 FCD domain HHJ59_05145 PF00392 Bacterial regulatory proteins, gntR family HHJ59_05150 PF13802 Galactose mutarotase-like HHJ59_05150 PF01055 Glycosyl hydrolases family 31 HHJ59_05150 PF17137 Domain of unknown function (DUF5110) HHJ59_05150 PF16338 Domain of unknown function (DUF4968) HHJ59_05155 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HHJ59_05160 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HHJ59_05170 PF03480 Bacterial extracellular solute-binding protein, family 7 HHJ59_05175 PF00106 short chain dehydrogenase HHJ59_05180 PF02614 Glucuronate isomerase HHJ59_05190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HHJ59_05195 PF00155 Aminotransferase class I and II HHJ59_05200 PF00266 Aminotransferase class-V HHJ59_05205 PF04363 Protein of unknown function (DUF496) HHJ59_05210 PF05662 Coiled stalk of trimeric autotransporter adhesin HHJ59_05210 PF13018 Extended Signal Peptide of Type V secretion system HHJ59_05210 PF03895 YadA-like membrane anchor domain HHJ59_05210 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin HHJ59_05215 PF00367 phosphotransferase system, EIIB HHJ59_05215 PF02378 Phosphotransferase system, EIIC HHJ59_05220 PF05191 Adenylate kinase, active site lid HHJ59_05225 PF00561 alpha/beta hydrolase fold HHJ59_05230 PF16582 Middle domain of thiamine pyrophosphate HHJ59_05230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HHJ59_05230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HHJ59_05235 PF00425 chorismate binding enzyme HHJ59_05240 PF00155 Aminotransferase class I and II HHJ59_05245 PF07840 FadR C-terminal domain HHJ59_05245 PF00392 Bacterial regulatory proteins, gntR family HHJ59_05250 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HHJ59_05255 PF02600 Disulfide bond formation protein DsbB HHJ59_05260 PF03741 Integral membrane protein TerC family HHJ59_05265 PF02976 DNA mismatch repair enzyme MutH HHJ59_05270 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HHJ59_05270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HHJ59_05275 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HHJ59_05285 PF03458 UPF0126 domain HHJ59_05290 PF00171 Aldehyde dehydrogenase family HHJ59_05295 PF00696 Amino acid kinase family HHJ59_05295 PF01842 ACT domain HHJ59_05300 PF00581 Rhodanese-like domain HHJ59_05305 PF04143 Sulphur transport HHJ59_05310 PF00709 Adenylosuccinate synthetase HHJ59_05325 PF01791 DeoC/LacD family aldolase HHJ59_05330 PF01979 Amidohydrolase family HHJ59_05335 PF08220 DeoR-like helix-turn-helix domain HHJ59_05335 PF00455 DeoR C terminal sensor domain HHJ59_05345 PF00884 Sulfatase HHJ59_05350 PF13186 Iron-sulfur cluster-binding domain HHJ59_05350 PF04055 Radical SAM superfamily HHJ59_05360 PF07470 Glycosyl Hydrolase Family 88 HHJ59_05365 PF03830 PTS system sorbose subfamily IIB component HHJ59_05365 PF03610 PTS system fructose IIA component HHJ59_05370 PF03613 PTS system mannose/fructose/sorbose family IID component HHJ59_05375 PF03609 PTS system sorbose-specific iic component HHJ59_05380 PF03830 PTS system sorbose subfamily IIB component HHJ59_05385 PF01380 SIS domain HHJ59_05390 PF08013 Tagatose 6 phosphate kinase HHJ59_05395 PF00884 Sulfatase HHJ59_05410 PF01614 Bacterial transcriptional regulator HHJ59_05410 PF09339 IclR helix-turn-helix domain HHJ59_05415 PF00294 pfkB family carbohydrate kinase HHJ59_05420 PF01081 KDPG and KHG aldolase HHJ59_05425 PF03009 Glycerophosphoryl diester phosphodiesterase family HHJ59_05430 PF00005 ABC transporter HHJ59_05430 PF08402 TOBE domain HHJ59_05435 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_05440 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_05450 PF00328 Histidine phosphatase superfamily (branch 2) HHJ59_05460 PF01132 Elongation factor P (EF-P) OB domain HHJ59_05460 PF09285 Elongation factor P, C-terminal HHJ59_05460 PF08207 Elongation factor P (EF-P) KOW-like domain HHJ59_05465 PF04055 Radical SAM superfamily HHJ59_05470 PF08525 Opacity-associated protein A N-terminal motif HHJ59_05470 PF04225 Opacity-associated protein A LysM-like domain HHJ59_05475 PF04381 Putative exonuclease, RdgC HHJ59_05480 PF14748 Pyrroline-5-carboxylate reductase dimerisation HHJ59_05480 PF03807 NADP oxidoreductase coenzyme F420-dependent HHJ59_05485 PF12832 MFS_1 like family HHJ59_05490 PF02899 Phage integrase, N-terminal SAM-like domain HHJ59_05490 PF00589 Phage integrase family HHJ59_05495 PF00800 Prephenate dehydratase HHJ59_05495 PF01817 Chorismate mutase type II HHJ59_05500 PF08659 KR domain HHJ59_05500 PF02801 Beta-ketoacyl synthase, C-terminal domain HHJ59_05500 PF00109 Beta-ketoacyl synthase, N-terminal domain HHJ59_05500 PF14765 Polyketide synthase dehydratase HHJ59_05500 PF00550 Phosphopantetheine attachment site HHJ59_05500 PF00107 Zinc-binding dehydrogenase HHJ59_05500 PF08240 Alcohol dehydrogenase GroES-like domain HHJ59_05500 PF00698 Acyl transferase domain HHJ59_05500 PF16197 Ketoacyl-synthetase C-terminal extension HHJ59_05515 PF00106 short chain dehydrogenase HHJ59_05520 PF01965 DJ-1/PfpI family HHJ59_05530 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HHJ59_05535 PF00091 Tubulin/FtsZ family, GTPase domain HHJ59_05535 PF12327 FtsZ family, C-terminal domain HHJ59_05540 PF02491 SHS2 domain inserted in FTSA HHJ59_05545 PF03799 Cell division protein FtsQ HHJ59_05545 PF08478 POTRA domain, FtsQ-type HHJ59_05550 PF07478 D-ala D-ala ligase C-terminus HHJ59_05550 PF01820 D-ala D-ala ligase N-terminus HHJ59_05555 PF02875 Mur ligase family, glutamate ligase domain HHJ59_05555 PF08245 Mur ligase middle domain HHJ59_05555 PF01225 Mur ligase family, catalytic domain HHJ59_05560 PF04101 Glycosyltransferase family 28 C-terminal domain HHJ59_05560 PF03033 Glycosyltransferase family 28 N-terminal domain HHJ59_05565 PF01098 Cell cycle protein HHJ59_05570 PF02875 Mur ligase family, glutamate ligase domain HHJ59_05570 PF08245 Mur ligase middle domain HHJ59_05575 PF00953 Glycosyl transferase family 4 HHJ59_05575 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HHJ59_05580 PF08245 Mur ligase middle domain HHJ59_05580 PF02875 Mur ligase family, glutamate ligase domain HHJ59_05580 PF01225 Mur ligase family, catalytic domain HHJ59_05585 PF08245 Mur ligase middle domain HHJ59_05585 PF02875 Mur ligase family, glutamate ligase domain HHJ59_05585 PF01225 Mur ligase family, catalytic domain HHJ59_05590 PF00905 Penicillin binding protein transpeptidase domain HHJ59_05590 PF03717 Penicillin-binding Protein dimerisation domain HHJ59_05595 PF04999 Cell division protein FtsL HHJ59_05600 PF01795 MraW methylase family HHJ59_05605 PF02381 MraZ protein, putative antitoxin-like HHJ59_05615 PF17176 tRNA-binding domain HHJ59_05615 PF05127 Helicase HHJ59_05615 PF13718 GNAT acetyltransferase 2 HHJ59_05620 PF02130 Uncharacterized protein family UPF0054 HHJ59_05625 PF02562 PhoH-like protein HHJ59_05630 PF00149 Calcineurin-like phosphoesterase HHJ59_05635 PF01553 Acyltransferase HHJ59_05640 PF07732 Multicopper oxidase HHJ59_05645 PF13230 Glutamine amidotransferases class-II HHJ59_05650 PF03222 Tryptophan/tyrosine permease family HHJ59_05655 PF03315 Serine dehydratase beta chain HHJ59_05655 PF03313 Serine dehydratase alpha chain HHJ59_05660 PF01578 Cytochrome C assembly protein HHJ59_05660 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HHJ59_05665 PF08534 Redoxin HHJ59_05670 PF03918 Cytochrome C biogenesis protein HHJ59_05675 PF03918 Cytochrome C biogenesis protein HHJ59_05685 PF01336 OB-fold nucleic acid binding domain HHJ59_05685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HHJ59_05685 PF02811 PHP domain HHJ59_05685 PF07733 Bacterial DNA polymerase III alpha NTPase domain HHJ59_05685 PF14579 Helix-hairpin-helix motif HHJ59_05690 PF03916 Polysulphide reductase, NrfD HHJ59_05695 PF13247 4Fe-4S dicluster domain HHJ59_05705 PF02335 Cytochrome c552 HHJ59_05710 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HHJ59_05710 PF04055 Radical SAM superfamily HHJ59_05715 PF03099 Biotin/lipoate A/B protein ligase family HHJ59_05720 PF04359 Protein of unknown function (DUF493) HHJ59_05725 PF00768 D-alanyl-D-alanine carboxypeptidase HHJ59_05725 PF07943 Penicillin-binding protein 5, C-terminal domain HHJ59_05730 PF05036 Sporulation related domain HHJ59_05730 PF03330 Lytic transglycolase HHJ59_05735 PF01098 Cell cycle protein HHJ59_05740 PF00905 Penicillin binding protein transpeptidase domain HHJ59_05740 PF03717 Penicillin-binding Protein dimerisation domain HHJ59_05745 PF02590 Predicted SPOUT methyltransferase HHJ59_05755 PF00270 DEAD/DEAH box helicase HHJ59_05755 PF00271 Helicase conserved C-terminal domain HHJ59_05760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HHJ59_05760 PF07498 Rho termination factor, N-terminal domain HHJ59_05760 PF07497 Rho termination factor, RNA-binding domain HHJ59_05765 PF07690 Major Facilitator Superfamily HHJ59_05775 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HHJ59_05780 PF00485 Phosphoribulokinase / Uridine kinase family HHJ59_05785 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_05790 PF00005 ABC transporter HHJ59_05790 PF08402 TOBE domain HHJ59_05815 PF00462 Glutaredoxin HHJ59_05830 PF04011 LemA family HHJ59_05835 PF01389 OmpA-like transmembrane domain HHJ59_05835 PF00691 OmpA family HHJ59_05840 PF13183 4Fe-4S dicluster domain HHJ59_05840 PF02913 FAD linked oxidases, C-terminal domain HHJ59_05840 PF01565 FAD binding domain HHJ59_05845 PF03061 Thioesterase superfamily HHJ59_05850 PF00762 Ferrochelatase HHJ59_05855 PF03922 OmpW family HHJ59_05865 PF04279 Intracellular septation protein A HHJ59_05870 PF03061 Thioesterase superfamily HHJ59_05875 PF03795 YCII-related domain HHJ59_05880 PF11791 Aconitate B N-terminal domain HHJ59_05880 PF00330 Aconitase family (aconitate hydratase) HHJ59_05880 PF06434 Aconitate hydratase 2 N-terminus HHJ59_05885 PF01509 TruB family pseudouridylate synthase (N terminal domain) HHJ59_05885 PF16198 tRNA pseudouridylate synthase B C-terminal domain HHJ59_05885 PF09157 Pseudouridine synthase II TruB, C-terminal HHJ59_05890 PF02033 Ribosome-binding factor A HHJ59_05895 PF00529 HlyD membrane-fusion protein of T1SS HHJ59_05895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HHJ59_05900 PF11742 Protein of unknown function (DUF3302) HHJ59_05905 PF04760 Translation initiation factor IF-2, N-terminal region HHJ59_05905 PF00009 Elongation factor Tu GTP binding domain HHJ59_05905 PF08364 Bacterial translation initiation factor IF-2 associated region HHJ59_05905 PF11987 Translation-initiation factor 2 HHJ59_05910 PF13184 NusA-like KH domain HHJ59_05910 PF00575 S1 RNA binding domain HHJ59_05910 PF08529 NusA N-terminal domain HHJ59_05915 PF02576 RimP N-terminal domain HHJ59_05915 PF17384 RimP C-terminal SH3 domain HHJ59_05930 PF01235 Sodium:alanine symporter family HHJ59_05945 PF00480 ROK family HHJ59_05950 PF01569 PAP2 superfamily HHJ59_05955 PF00925 GTP cyclohydrolase II HHJ59_05970 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HHJ59_05980 PF00677 Lumazine binding domain HHJ59_05985 PF01554 MatE HHJ59_05990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ59_05990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ59_05995 PF01386 Ribosomal L25p family HHJ59_06000 PF09335 SNARE associated Golgi protein HHJ59_06005 PF01541 GIY-YIG catalytic domain HHJ59_06005 PF02151 UvrB/uvrC motif HHJ59_06005 PF08459 UvrC Helix-hairpin-helix N-terminal HHJ59_06010 PF00005 ABC transporter HHJ59_06015 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_06020 PF09084 NMT1/THI5 like HHJ59_06025 PF02348 Cytidylyltransferase HHJ59_06030 PF03966 Trm112p-like protein HHJ59_06035 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HHJ59_06040 PF00664 ABC transporter transmembrane region HHJ59_06040 PF00005 ABC transporter HHJ59_06045 PF00753 Metallo-beta-lactamase superfamily HHJ59_06045 PF13567 Domain of unknown function (DUF4131) HHJ59_06045 PF03772 Competence protein HHJ59_06050 PF02110 Hydroxyethylthiazole kinase family HHJ59_06055 PF08543 Phosphomethylpyrimidine kinase HHJ59_06060 PF02581 Thiamine monophosphate synthase HHJ59_06070 PF02395 Immunoglobulin A1 protease HHJ59_06070 PF03212 Pertactin HHJ59_06070 PF03797 Autotransporter beta-domain HHJ59_06075 PF18073 Rubredoxin metal binding domain HHJ59_06080 PF01928 CYTH domain HHJ59_06085 PF01865 Protein of unknown function DUF47 HHJ59_06090 PF01384 Phosphate transporter family HHJ59_06095 PF00484 Carbonic anhydrase HHJ59_06100 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HHJ59_06100 PF02222 ATP-grasp domain HHJ59_06105 PF00155 Aminotransferase class I and II HHJ59_06110 PF00312 Ribosomal protein S15 HHJ59_06115 PF05651 Putative sugar diacid recognition HHJ59_06115 PF13556 PucR C-terminal helix-turn-helix domain HHJ59_06115 PF17853 GGDEF-like domain HHJ59_06120 PF02447 GntP family permease HHJ59_06125 PF02595 Glycerate kinase family HHJ59_06130 PF17864 RuvB AAA lid domain HHJ59_06130 PF05491 RuvB C-terminal winged helix domain HHJ59_06130 PF05496 Holliday junction DNA helicase RuvB P-loop domain HHJ59_06135 PF01330 RuvA N terminal domain HHJ59_06135 PF07499 RuvA, C-terminal domain HHJ59_06140 PF02075 Crossover junction endodeoxyribonuclease RuvC HHJ59_06145 PF01709 Transcriptional regulator HHJ59_06150 PF00293 NUDIX domain HHJ59_06155 PF02938 GAD domain HHJ59_06155 PF00152 tRNA synthetases class II (D, K and N) HHJ59_06155 PF01336 OB-fold nucleic acid binding domain HHJ59_06160 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HHJ59_06165 PF04221 RelB antitoxin HHJ59_06170 PF13649 Methyltransferase domain HHJ59_06180 PF13609 Gram-negative porin HHJ59_06185 PF13609 Gram-negative porin HHJ59_06195 PF00375 Sodium:dicarboxylate symporter family HHJ59_06200 PF00717 Peptidase S24-like HHJ59_06210 PF00342 Phosphoglucose isomerase HHJ59_06215 PF00842 Alanine racemase, C-terminal domain HHJ59_06215 PF01168 Alanine racemase, N-terminal domain HHJ59_06220 PF03796 DnaB-like helicase C terminal domain HHJ59_06220 PF00772 DnaB-like helicase N terminal domain HHJ59_06225 PF06185 YecM protein HHJ59_06230 PF05746 DALR anticodon binding domain HHJ59_06230 PF03485 Arginyl tRNA synthetase N terminal domain HHJ59_06230 PF00750 tRNA synthetases class I (R) HHJ59_06235 PF03459 TOBE domain HHJ59_06235 PF00005 ABC transporter HHJ59_06240 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_06250 PF03459 TOBE domain HHJ59_06250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_06255 PF03616 Sodium/glutamate symporter HHJ59_06260 PF09092 Lyase, N terminal HHJ59_06260 PF09093 Lyase, catalytic HHJ59_06260 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HHJ59_06260 PF02278 Polysaccharide lyase family 8, super-sandwich domain HHJ59_06270 PF01925 Sulfite exporter TauE/SafE HHJ59_06275 PF00027 Cyclic nucleotide-binding domain HHJ59_06280 PF06968 Biotin and Thiamin Synthesis associated domain HHJ59_06280 PF04055 Radical SAM superfamily HHJ59_06285 PF00005 ABC transporter HHJ59_06290 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_06300 PF03710 Glutamate-ammonia ligase adenylyltransferase HHJ59_06300 PF08335 GlnD PII-uridylyltransferase HHJ59_06310 PF08402 TOBE domain HHJ59_06310 PF00005 ABC transporter HHJ59_06315 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_06320 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_06325 PF13416 Bacterial extracellular solute-binding protein HHJ59_06335 PF01638 HxlR-like helix-turn-helix HHJ59_06340 PF00390 Malic enzyme, N-terminal domain HHJ59_06340 PF03949 Malic enzyme, NAD binding domain HHJ59_06350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ59_06350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ59_06355 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_06360 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_06370 PF17912 MalK OB fold domain HHJ59_06370 PF00005 ABC transporter HHJ59_06370 PF03459 TOBE domain HHJ59_06375 PF00392 Bacterial regulatory proteins, gntR family HHJ59_06375 PF07729 FCD domain HHJ59_06380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ59_06380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ59_06385 PF02554 Carbon starvation protein CstA HHJ59_06390 PF12170 DNA polymerase III tau subunit V interacting with alpha HHJ59_06390 PF12169 DNA polymerase III subunits gamma and tau domain III HHJ59_06395 PF00156 Phosphoribosyl transferase domain HHJ59_06400 PF03279 Bacterial lipid A biosynthesis acyltransferase HHJ59_06405 PF01925 Sulfite exporter TauE/SafE HHJ59_06410 PF03411 Penicillin-insensitive murein endopeptidase HHJ59_06415 PF01264 Chorismate synthase HHJ59_06420 PF12794 Mechanosensitive ion channel inner membrane domain 1 HHJ59_06420 PF00924 Mechanosensitive ion channel HHJ59_06420 PF12795 Mechanosensitive ion channel porin domain HHJ59_06425 PF00501 AMP-binding enzyme HHJ59_06430 PF17206 SeqA protein N-terminal domain HHJ59_06430 PF03925 SeqA protein C-terminal domain HHJ59_06435 PF00561 alpha/beta hydrolase fold HHJ59_06440 PF01402 Ribbon-helix-helix protein, copG family HHJ59_06445 PF00258 Flavodoxin HHJ59_06450 PF01475 Ferric uptake regulator family HHJ59_06460 PF00521 DNA gyrase/topoisomerase IV, subunit A HHJ59_06460 PF03989 DNA gyrase C-terminal domain, beta-propeller HHJ59_06465 PF04247 Invasion gene expression up-regulator, SirB HHJ59_06475 PF00893 Small Multidrug Resistance protein HHJ59_06480 PF00106 short chain dehydrogenase HHJ59_06490 PF01965 DJ-1/PfpI family HHJ59_06505 PF07690 Major Facilitator Superfamily HHJ59_06520 PF02525 Flavodoxin-like fold HHJ59_06525 PF01066 CDP-alcohol phosphatidyltransferase HHJ59_06530 PF10458 Valyl tRNA synthetase tRNA binding arm HHJ59_06530 PF00133 tRNA synthetases class I (I, L, M and V) HHJ59_06530 PF08264 Anticodon-binding domain of tRNA HHJ59_06540 PF00145 C-5 cytosine-specific DNA methylase HHJ59_06545 PF06414 Zeta toxin HHJ59_06555 PF13673 Acetyltransferase (GNAT) domain HHJ59_06560 PF04364 DNA polymerase III chi subunit, HolC HHJ59_06565 PF10415 Fumarase C C-terminus HHJ59_06565 PF00206 Lyase HHJ59_06570 PF04715 Anthranilate synthase component I, N terminal region HHJ59_06570 PF00425 chorismate binding enzyme HHJ59_06575 PF00117 Glutamine amidotransferase class-I HHJ59_06580 PF14552 Tautomerase enzyme HHJ59_06585 PF02885 Glycosyl transferase family, helical bundle domain HHJ59_06585 PF00591 Glycosyl transferase family, a/b domain HHJ59_06590 PF00218 Indole-3-glycerol phosphate synthase HHJ59_06590 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HHJ59_06595 PF00291 Pyridoxal-phosphate dependent enzyme HHJ59_06600 PF00290 Tryptophan synthase alpha chain HHJ59_06605 PF07411 Domain of unknown function (DUF1508) HHJ59_06615 PF02237 Biotin protein ligase C terminal domain HHJ59_06615 PF03099 Biotin/lipoate A/B protein ligase family HHJ59_06620 PF00478 IMP dehydrogenase / GMP reductase domain HHJ59_06620 PF00571 CBS domain HHJ59_06635 PF00958 GMP synthase C terminal domain HHJ59_06635 PF02540 NAD synthase HHJ59_06635 PF00117 Glutamine amidotransferase class-I HHJ59_06640 PF00589 Phage integrase family HHJ59_06640 PF14659 Phage integrase, N-terminal SAM-like domain HHJ59_06640 PF13356 Arm DNA-binding domain HHJ59_06675 PF09669 Phage regulatory protein Rha (Phage_pRha) HHJ59_06675 PF10549 ORF11CD3 domain HHJ59_06700 PF00182 Chitinase class I HHJ59_06725 PF03099 Biotin/lipoate A/B protein ligase family HHJ59_06725 PF00293 NUDIX domain HHJ59_06885 PF01695 IstB-like ATP binding protein HHJ59_06910 PF00717 Peptidase S24-like HHJ59_06910 PF01726 LexA DNA binding domain HHJ59_06925 PF07411 Domain of unknown function (DUF1508) HHJ59_06980 PF00436 Single-strand binding protein family HHJ59_06995 PF04381 Putative exonuclease, RdgC HHJ59_07040 PF00145 C-5 cytosine-specific DNA methylase HHJ59_07060 PF14256 YwiC-like protein HHJ59_07065 PF01042 Endoribonuclease L-PSP HHJ59_07070 PF03372 Endonuclease/Exonuclease/phosphatase family HHJ59_07075 PF00999 Sodium/hydrogen exchanger family HHJ59_07085 PF03412 Peptidase C39 family HHJ59_07085 PF00005 ABC transporter HHJ59_07085 PF00664 ABC transporter transmembrane region HHJ59_07150 PF01276 Orn/Lys/Arg decarboxylase, major domain HHJ59_07150 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HHJ59_07150 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HHJ59_07155 PF13520 Amino acid permease HHJ59_07160 PF04284 Protein of unknown function (DUF441) HHJ59_07165 PF00403 Heavy-metal-associated domain HHJ59_07175 PF02634 FdhD/NarQ family HHJ59_07185 PF13247 4Fe-4S dicluster domain HHJ59_07185 PF09163 Formate dehydrogenase N, transmembrane HHJ59_07190 PF01292 Prokaryotic cytochrome b561 HHJ59_07195 PF04216 Protein involved in formate dehydrogenase formation HHJ59_07205 PF07715 TonB-dependent Receptor Plug Domain HHJ59_07205 PF00593 TonB dependent receptor HHJ59_07210 PF05437 Branched-chain amino acid transport protein (AzlD) HHJ59_07215 PF03591 AzlC protein HHJ59_07220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_07220 PF03466 LysR substrate binding domain HHJ59_07225 PF08267 Cobalamin-independent synthase, N-terminal domain HHJ59_07225 PF01717 Cobalamin-independent synthase, Catalytic domain HHJ59_07230 PF00939 Sodium:sulfate symporter transmembrane region HHJ59_07240 PF11898 Domain of unknown function (DUF3418) HHJ59_07240 PF04408 Helicase associated domain (HA2) HHJ59_07240 PF00271 Helicase conserved C-terminal domain HHJ59_07240 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HHJ59_07240 PF00270 DEAD/DEAH box helicase HHJ59_07245 PF00453 Ribosomal protein L20 HHJ59_07250 PF01632 Ribosomal protein L35 HHJ59_07255 PF05198 Translation initiation factor IF-3, N-terminal domain HHJ59_07255 PF00707 Translation initiation factor IF-3, C-terminal domain HHJ59_07260 PF01556 DnaJ C terminal domain HHJ59_07260 PF00684 DnaJ central domain HHJ59_07260 PF00226 DnaJ domain HHJ59_07265 PF00012 Hsp70 protein HHJ59_07270 PF00950 ABC 3 transport family HHJ59_07275 PF00005 ABC transporter HHJ59_07280 PF04225 Opacity-associated protein A LysM-like domain HHJ59_07280 PF01551 Peptidase family M23 HHJ59_07285 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HHJ59_07290 PF01668 SmpB protein HHJ59_07295 PF02601 Exonuclease VII, large subunit HHJ59_07295 PF13742 OB-fold nucleic acid binding domain HHJ59_07300 PF08007 Cupin superfamily protein HHJ59_07305 PF03658 RnfH family Ubiquitin HHJ59_07310 PF03364 Polyketide cyclase / dehydrase and lipid transport HHJ59_07315 PF01195 Peptidyl-tRNA hydrolase HHJ59_07320 PF06071 Protein of unknown function (DUF933) HHJ59_07320 PF01926 50S ribosome-binding GTPase HHJ59_07330 PF13520 Amino acid permease HHJ59_07335 PF18024 Helix-turn-helix domain HHJ59_07335 PF00158 Sigma-54 interaction domain HHJ59_07340 PF05128 Domain of unknown function (DUF697) HHJ59_07345 PF04317 YcjX-like family, DUF463 HHJ59_07350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HHJ59_07355 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_07360 PF12911 N-terminal TM domain of oligopeptide transport permease C HHJ59_07360 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_07365 PF00005 ABC transporter HHJ59_07365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HHJ59_07370 PF00005 ABC transporter HHJ59_07375 PF00444 Ribosomal protein L36 HHJ59_07380 PF01197 Ribosomal protein L31 HHJ59_07385 PF11412 Disulphide bond corrector protein DsbC HHJ59_07385 PF00085 Thioredoxin HHJ59_07385 PF02683 Cytochrome C biogenesis protein transmembrane region HHJ59_07395 PF07681 DoxX HHJ59_07400 PF02142 MGS-like domain HHJ59_07400 PF01808 AICARFT/IMPCHase bienzyme HHJ59_07410 PF02844 Phosphoribosylglycinamide synthetase, N domain HHJ59_07410 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HHJ59_07410 PF02843 Phosphoribosylglycinamide synthetase, C domain HHJ59_07415 PF00464 Serine hydroxymethyltransferase HHJ59_07420 PF00486 Transcriptional regulatory protein, C terminal HHJ59_07420 PF00072 Response regulator receiver domain HHJ59_07425 PF03550 Outer membrane lipoprotein LolB HHJ59_07430 PF08544 GHMP kinases C terminal HHJ59_07430 PF00288 GHMP kinases N terminal domain HHJ59_07435 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HHJ59_07435 PF14572 Phosphoribosyl synthetase-associated domain HHJ59_07440 PF01253 Translation initiation factor SUI1 HHJ59_07445 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HHJ59_07450 PF18073 Rubredoxin metal binding domain HHJ59_07455 PF06305 Lipopolysaccharide assembly protein A domain HHJ59_07460 PF00216 Bacterial DNA-binding protein HHJ59_07465 PF00575 S1 RNA binding domain HHJ59_07470 PF02224 Cytidylate kinase HHJ59_07480 PF05193 Peptidase M16 inactive domain HHJ59_07480 PF00675 Insulinase (Peptidase family M16) HHJ59_07485 PF04393 Protein of unknown function (DUF535) HHJ59_07490 PF00764 Arginosuccinate synthase HHJ59_07495 PF01370 NAD dependent epimerase/dehydratase family HHJ59_07510 PF01259 SAICAR synthetase HHJ59_07515 PF03144 Elongation factor Tu domain 2 HHJ59_07515 PF00009 Elongation factor Tu GTP binding domain HHJ59_07515 PF16658 Class II release factor RF3, C-terminal domain HHJ59_07520 PF00889 Elongation factor TS HHJ59_07525 PF00318 Ribosomal protein S2 HHJ59_07530 PF13145 PPIC-type PPIASE domain HHJ59_07535 PF02190 ATP-dependent protease La (LON) substrate-binding domain HHJ59_07535 PF00004 ATPase family associated with various cellular activities (AAA) HHJ59_07535 PF05362 Lon protease (S16) C-terminal proteolytic domain HHJ59_07540 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ59_07540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HHJ59_07545 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HHJ59_07550 PF06804 NlpB/DapX lipoprotein HHJ59_07555 PF00701 Dihydrodipicolinate synthetase family HHJ59_07560 PF00578 AhpC/TSA family HHJ59_07565 PF00465 Iron-containing alcohol dehydrogenase HHJ59_07565 PF00171 Aldehyde dehydrogenase family HHJ59_07570 PF00717 Peptidase S24-like HHJ59_07570 PF01726 LexA DNA binding domain HHJ59_07575 PF01553 Acyltransferase HHJ59_07580 PF02462 Opacity family porin protein HHJ59_07585 PF02080 TrkA-C domain HHJ59_07585 PF06826 Predicted Permease Membrane Region HHJ59_07590 PF00005 ABC transporter HHJ59_07590 PF06472 ABC transporter transmembrane region 2 HHJ59_07595 PF05175 Methyltransferase small domain HHJ59_07595 PF08468 Methyltransferase small domain N-terminal HHJ59_07600 PF10063 Uncharacterized integral membrane protein (DUF2301) HHJ59_07605 PF12833 Helix-turn-helix domain HHJ59_07605 PF02311 AraC-like ligand binding domain HHJ59_07610 PF02627 Carboxymuconolactone decarboxylase family HHJ59_07615 PF01235 Sodium:alanine symporter family HHJ59_07625 PF01121 Dephospho-CoA kinase HHJ59_07635 PF00482 Type II secretion system (T2SS), protein F HHJ59_07640 PF03830 PTS system sorbose subfamily IIB component HHJ59_07640 PF03610 PTS system fructose IIA component HHJ59_07645 PF03609 PTS system sorbose-specific iic component HHJ59_07650 PF03613 PTS system mannose/fructose/sorbose family IID component HHJ59_07655 PF06173 Protein of unknown function (DUF986) HHJ59_07660 PF01238 Phosphomannose isomerase type I HHJ59_07665 PF00075 RNase H HHJ59_07670 PF00929 Exonuclease HHJ59_07685 PF00586 AIR synthase related protein, N-terminal domain HHJ59_07685 PF02769 AIR synthase related protein, C-terminal domain HHJ59_07690 PF00551 Formyl transferase HHJ59_07695 PF00156 Phosphoribosyl transferase domain HHJ59_07700 PF00639 PPIC-type PPIASE domain HHJ59_07700 PF09312 SurA N-terminal domain HHJ59_07705 PF00398 Ribosomal RNA adenine dimethylase HHJ59_07710 PF00149 Calcineurin-like phosphoesterase HHJ59_07715 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) HHJ59_07720 PF08264 Anticodon-binding domain of tRNA HHJ59_07720 PF00133 tRNA synthetases class I (I, L, M and V) HHJ59_07720 PF13603 Leucyl-tRNA synthetase, Domain 2 HHJ59_07725 PF04390 Lipopolysaccharide-assembly HHJ59_07730 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HHJ59_07730 PF06144 DNA polymerase III, delta subunit HHJ59_07740 PF01351 Ribonuclease HII HHJ59_07745 PF02684 Lipid-A-disaccharide synthetase HHJ59_07750 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HHJ59_07750 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ59_07755 PF07977 FabA-like domain HHJ59_07760 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ59_07760 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HHJ59_07765 PF03938 Outer membrane protein (OmpH-like) HHJ59_07770 PF07244 Surface antigen variable number repeat HHJ59_07770 PF01103 Surface antigen HHJ59_07775 PF02163 Peptidase family M50 HHJ59_07785 PF01255 Putative undecaprenyl diphosphate synthase HHJ59_07790 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HHJ59_07790 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HHJ59_07790 PF13288 DXP reductoisomerase C-terminal domain HHJ59_07795 PF01765 Ribosome recycling factor HHJ59_07800 PF00696 Amino acid kinase family HHJ59_07805 PF00437 Type II/IV secretion system protein HHJ59_07805 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HHJ59_07810 PF07963 Prokaryotic N-terminal methylation motif HHJ59_07815 PF01510 N-acetylmuramoyl-L-alanine amidase HHJ59_07825 PF00293 NUDIX domain HHJ59_07830 PF01925 Sulfite exporter TauE/SafE HHJ59_07835 PF01790 Prolipoprotein diacylglyceryl transferase HHJ59_07840 PF00303 Thymidylate synthase HHJ59_07845 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HHJ59_07850 PF01979 Amidohydrolase family HHJ59_07855 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HHJ59_07860 PF14743 DNA ligase OB-like domain HHJ59_07860 PF01068 ATP dependent DNA ligase domain HHJ59_07870 PF05159 Capsule polysaccharide biosynthesis protein HHJ59_07875 PF05159 Capsule polysaccharide biosynthesis protein HHJ59_07885 PF00535 Glycosyl transferase family 2 HHJ59_07895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HHJ59_07895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HHJ59_07895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HHJ59_07900 PF00535 Glycosyl transferase family 2 HHJ59_07905 PF02563 Polysaccharide biosynthesis/export protein HHJ59_07915 PF01061 ABC-2 type transporter HHJ59_07920 PF00005 ABC transporter HHJ59_07930 PF04055 Radical SAM superfamily HHJ59_07935 PF01242 6-pyruvoyl tetrahydropterin synthase HHJ59_07940 PF06508 Queuosine biosynthesis protein QueC HHJ59_07945 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HHJ59_08095 PF04466 Phage terminase large subunit HHJ59_08095 PF17288 Terminase RNAseH like domain HHJ59_08100 PF03592 Terminase small subunit HHJ59_08125 PF05106 Phage holin family (Lysis protein S) HHJ59_08145 PF02498 BRO family, N-terminal domain HHJ59_08145 PF10548 P22AR C-terminal domain HHJ59_08150 PF05772 NinB protein HHJ59_08205 PF05106 Phage holin family (Lysis protein S) HHJ59_08230 PF03592 Terminase small subunit HHJ59_08235 PF17288 Terminase RNAseH like domain HHJ59_08235 PF04466 Phage terminase large subunit HHJ59_08240 PF06381 Protein of unknown function (DUF1073) HHJ59_08245 PF04233 Phage Mu protein F like protein HHJ59_08255 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) HHJ59_08300 PF10876 Phage tail assemb.y chaperone protein, TAC HHJ59_08330 PF01051 Initiator Replication protein HHJ59_08400 PF07687 Peptidase dimerisation domain HHJ59_08400 PF01546 Peptidase family M20/M25/M40 HHJ59_08405 PF01118 Semialdehyde dehydrogenase, NAD binding domain HHJ59_08405 PF02774 Semialdehyde dehydrogenase, dimerisation domain HHJ59_08410 PF00696 Amino acid kinase family HHJ59_08415 PF00206 Lyase HHJ59_08415 PF14698 Argininosuccinate lyase C-terminal HHJ59_08430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ59_08430 PF00512 His Kinase A (phospho-acceptor) domain HHJ59_08430 PF08521 Two-component sensor kinase N-terminal HHJ59_08435 PF00486 Transcriptional regulatory protein, C terminal HHJ59_08435 PF00072 Response regulator receiver domain HHJ59_08445 PF02401 LytB protein HHJ59_08450 PF01252 Signal peptidase (SPase) II HHJ59_08455 PF00133 tRNA synthetases class I (I, L, M and V) HHJ59_08455 PF08264 Anticodon-binding domain of tRNA HHJ59_08460 PF06574 FAD synthetase HHJ59_08460 PF01687 Riboflavin kinase HHJ59_08465 PF10396 GTP-binding protein TrmE N-terminus HHJ59_08465 PF12631 MnmE helical domain HHJ59_08465 PF01926 50S ribosome-binding GTPase HHJ59_08475 PF00210 Ferritin-like domain HHJ59_08480 PF00117 Glutamine amidotransferase class-I HHJ59_08485 PF00425 chorismate binding enzyme HHJ59_08490 PF01063 Amino-transferase class IV HHJ59_08510 PF01042 Endoribonuclease L-PSP HHJ59_08515 PF01810 LysE type translocator HHJ59_08520 PF00834 Ribulose-phosphate 3 epimerase family HHJ59_08525 PF13419 Haloacid dehalogenase-like hydrolase HHJ59_08530 PF00579 tRNA synthetases class I (W and Y) HHJ59_08535 PF01370 NAD dependent epimerase/dehydratase family HHJ59_08535 PF02222 ATP-grasp domain HHJ59_08540 PF17364 Family of unknown function (DUF5389) HHJ59_08545 PF01694 Rhomboid family HHJ59_08550 PF00455 DeoR C terminal sensor domain HHJ59_08550 PF08220 DeoR-like helix-turn-helix domain HHJ59_08555 PF02754 Cysteine-rich domain HHJ59_08555 PF13183 4Fe-4S dicluster domain HHJ59_08560 PF00890 FAD binding domain HHJ59_08565 PF01266 FAD dependent oxidoreductase HHJ59_08565 PF04324 BFD-like [2Fe-2S] binding domain HHJ59_08570 PF07690 Major Facilitator Superfamily HHJ59_08575 PF03009 Glycerophosphoryl diester phosphodiesterase family HHJ59_08580 PF00448 SRP54-type protein, GTPase domain HHJ59_08580 PF02881 SRP54-type protein, helical bundle domain HHJ59_08590 PF17782 DprA winged helix domain HHJ59_08590 PF02481 DNA recombination-mediator protein A HHJ59_08600 PF04055 Radical SAM superfamily HHJ59_08605 PF01594 AI-2E family transporter HHJ59_08610 PF00543 Nitrogen regulatory protein P-II HHJ59_08615 PF00994 Probable molybdopterin binding domain HHJ59_08630 PF01066 CDP-alcohol phosphatidyltransferase HHJ59_08635 PF02080 TrkA-C domain HHJ59_08635 PF03600 Citrate transporter HHJ59_08640 PF13464 Domain of unknown function (DUF4115) HHJ59_08645 PF04551 GcpE protein HHJ59_08650 PF03129 Anticodon binding domain HHJ59_08650 PF13393 Histidyl-tRNA synthetase HHJ59_08655 PF09976 Tetratricopeptide repeat-like domain HHJ59_08660 PF04932 O-Antigen ligase HHJ59_08675 PF01370 NAD dependent epimerase/dehydratase family HHJ59_08680 PF16363 GDP-mannose 4,6 dehydratase HHJ59_08685 PF00483 Nucleotidyl transferase HHJ59_08685 PF01050 Mannose-6-phosphate isomerase HHJ59_08690 PF04751 Protein of unknown function (DUF615) HHJ59_08695 PF01523 Putative modulator of DNA gyrase HHJ59_08700 PF00156 Phosphoribosyl transferase domain HHJ59_08705 PF17274 Family of unknown function (DUF5339) HHJ59_08710 PF01654 Cytochrome bd terminal oxidase subunit I HHJ59_08715 PF02322 Cytochrome bd terminal oxidase subunit II HHJ59_08725 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HHJ59_08735 PF03061 Thioesterase superfamily HHJ59_08740 PF01618 MotA/TolQ/ExbB proton channel family HHJ59_08745 PF02472 Biopolymer transport protein ExbD/TolR HHJ59_08750 PF06519 TolA C-terminal HHJ59_08755 PF07676 WD40-like Beta Propeller Repeat HHJ59_08755 PF04052 TolB amino-terminal domain HHJ59_08760 PF00691 OmpA family HHJ59_08770 PF07963 Prokaryotic N-terminal methylation motif HHJ59_08790 PF17946 RecC C-terminal domain HHJ59_08800 PF00596 Class II Aldolase and Adducin N-terminal domain HHJ59_08805 PF01261 Xylose isomerase-like TIM barrel HHJ59_08810 PF00455 DeoR C terminal sensor domain HHJ59_08810 PF08220 DeoR-like helix-turn-helix domain HHJ59_08820 PF03611 PTS system sugar-specific permease component HHJ59_08825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HHJ59_08830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HHJ59_08835 PF03480 Bacterial extracellular solute-binding protein, family 7 HHJ59_08840 PF01344 Kelch motif HHJ59_08845 PF04977 Septum formation initiator HHJ59_08850 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HHJ59_08905 PF09383 NIL domain HHJ59_08905 PF00005 ABC transporter HHJ59_08910 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_08915 PF03180 NLPA lipoprotein HHJ59_08920 PF01914 MarC family integral membrane protein HHJ59_08925 PF00588 SpoU rRNA Methylase family HHJ59_08930 PF05525 Branched-chain amino acid transport protein HHJ59_08935 PF00483 Nucleotidyl transferase HHJ59_08940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HHJ59_08940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HHJ59_08940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HHJ59_08940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HHJ59_08945 PF02599 Global regulator protein family HHJ59_08950 PF01411 tRNA synthetases class II (A) HHJ59_08950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HHJ59_08950 PF02272 DHHA1 domain HHJ59_08955 PF00582 Universal stress protein family HHJ59_08960 PF03819 MazG nucleotide pyrophosphohydrolase domain HHJ59_08965 PF00892 EamA-like transporter family HHJ59_08970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_08970 PF03466 LysR substrate binding domain HHJ59_08975 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HHJ59_08975 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HHJ59_08980 PF00884 Sulfatase HHJ59_08980 PF16347 Domain of unknown function (DUF4976) HHJ59_08990 PF00474 Sodium:solute symporter family HHJ59_09000 PF04277 Oxaloacetate decarboxylase, gamma chain HHJ59_09005 PF00682 HMGL-like HHJ59_09005 PF02436 Conserved carboxylase domain HHJ59_09005 PF00364 Biotin-requiring enzyme HHJ59_09010 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HHJ59_09025 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HHJ59_09025 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HHJ59_09030 PF01491 Frataxin-like domain HHJ59_09035 PF16124 RecQ zinc-binding HHJ59_09035 PF00570 HRDC domain HHJ59_09035 PF00271 Helicase conserved C-terminal domain HHJ59_09035 PF00270 DEAD/DEAH box helicase HHJ59_09035 PF09382 RQC domain HHJ59_09040 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HHJ59_09040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HHJ59_09040 PF02142 MGS-like domain HHJ59_09055 PF00156 Phosphoribosyl transferase domain HHJ59_09060 PF01546 Peptidase family M20/M25/M40 HHJ59_09060 PF07687 Peptidase dimerisation domain HHJ59_09065 PF08774 VRR-NUC domain HHJ59_09065 PF04851 Type III restriction enzyme, res subunit HHJ59_09070 PF01555 DNA methylase HHJ59_09070 PF18273 Type III R-M EcoP15I C-terminal domain HHJ59_09080 PF13508 Acetyltransferase (GNAT) domain HHJ59_09095 PF16916 Dimerisation domain of Zinc Transporter HHJ59_09095 PF01545 Cation efflux family HHJ59_09100 PF00376 MerR family regulatory protein HHJ59_09100 PF09278 MerR, DNA binding HHJ59_09115 PF12161 HsdM N-terminal domain HHJ59_09115 PF02384 N-6 DNA Methylase HHJ59_09130 PF07690 Major Facilitator Superfamily HHJ59_09135 PF00459 Inositol monophosphatase family HHJ59_09140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HHJ59_09145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HHJ59_09145 PF02874 ATP synthase alpha/beta family, beta-barrel domain HHJ59_09150 PF00231 ATP synthase HHJ59_09155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HHJ59_09155 PF00306 ATP synthase alpha/beta chain, C terminal domain HHJ59_09155 PF02874 ATP synthase alpha/beta family, beta-barrel domain HHJ59_09160 PF00213 ATP synthase delta (OSCP) subunit HHJ59_09165 PF00430 ATP synthase B/B' CF(0) HHJ59_09170 PF00137 ATP synthase subunit C HHJ59_09175 PF00119 ATP synthase A chain HHJ59_09185 PF02527 rRNA small subunit methyltransferase G HHJ59_09190 PF01134 Glucose inhibited division protein A HHJ59_09190 PF13932 GidA associated domain HHJ59_09195 PF00258 Flavodoxin HHJ59_09200 PF06005 Cell division protein ZapB HHJ59_09205 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HHJ59_09210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ59_09210 PF18053 DNA gyrase B subunit insert domain HHJ59_09210 PF00986 DNA gyrase B subunit, carboxyl terminus HHJ59_09210 PF00204 DNA gyrase B HHJ59_09210 PF01751 Toprim domain HHJ59_09215 PF00593 TonB dependent receptor HHJ59_09215 PF07715 TonB-dependent Receptor Plug Domain HHJ59_09220 PF00664 ABC transporter transmembrane region HHJ59_09220 PF00005 ABC transporter HHJ59_09225 PF00664 ABC transporter transmembrane region HHJ59_09225 PF00005 ABC transporter HHJ59_09230 PF03150 Di-haem cytochrome c peroxidase HHJ59_09230 PF00034 Cytochrome c HHJ59_09230 PF14376 Haem-binding domain HHJ59_09240 PF00209 Sodium:neurotransmitter symporter family HHJ59_09245 PF01488 Shikimate / quinate 5-dehydrogenase HHJ59_09245 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HHJ59_09245 PF08501 Shikimate dehydrogenase substrate binding domain HHJ59_09250 PF01300 Telomere recombination HHJ59_09255 PF01396 Topoisomerase DNA binding C4 zinc finger HHJ59_09260 PF02545 Maf-like protein HHJ59_09265 PF02646 RmuC family HHJ59_09270 PF03350 Uncharacterized protein family, UPF0114 HHJ59_09275 PF04994 TfoX C-terminal domain HHJ59_09275 PF04993 TfoX N-terminal domain HHJ59_09305 PF06418 CTP synthase N-terminus HHJ59_09305 PF00117 Glutamine amidotransferase class-I HHJ59_09310 PF01926 50S ribosome-binding GTPase HHJ59_09315 PF12833 Helix-turn-helix domain HHJ59_09320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ59_09320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ59_09330 PF00155 Aminotransferase class I and II HHJ59_09335 PF03553 Na+/H+ antiporter family HHJ59_09340 PF00206 Lyase HHJ59_09340 PF08328 Adenylosuccinate lyase C-terminal HHJ59_09345 PF04356 Protein of unknown function (DUF489) HHJ59_09355 PF00455 DeoR C terminal sensor domain HHJ59_09355 PF08220 DeoR-like helix-turn-helix domain HHJ59_09360 PF06923 Glucitol operon activator protein (GutM) HHJ59_09365 PF00106 short chain dehydrogenase HHJ59_09370 PF03829 PTS system glucitol/sorbitol-specific IIA component HHJ59_09375 PF07663 Sorbitol phosphotransferase enzyme II C-terminus HHJ59_09375 PF03612 Sorbitol phosphotransferase enzyme II N-terminus HHJ59_09380 PF03608 PTS system enzyme II sorbitol-specific factor HHJ59_09385 PF00999 Sodium/hydrogen exchanger family HHJ59_09385 PF02254 TrkA-N domain HHJ59_09390 PF04452 RNA methyltransferase HHJ59_09395 PF02622 Uncharacterized ACR, COG1678 HHJ59_09400 PF03652 Holliday junction resolvase HHJ59_09405 PF02653 Branched-chain amino acid transport system / permease component HHJ59_09410 PF00005 ABC transporter HHJ59_09415 PF13407 Periplasmic binding protein domain HHJ59_09420 PF14815 NUDIX domain HHJ59_09420 PF00730 HhH-GPD superfamily base excision DNA repair protein HHJ59_09425 PF04362 Bacterial Fe(2+) trafficking HHJ59_09430 PF01464 Transglycosylase SLT domain HHJ59_09430 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HHJ59_09445 PF01544 CorA-like Mg2+ transporter protein HHJ59_09450 PF02325 YGGT family HHJ59_09455 PF02594 Uncharacterised ACR, YggU family COG1872 HHJ59_09460 PF18075 FtsX extracellular domain HHJ59_09465 PF00005 ABC transporter HHJ59_09470 PF02780 Transketolase, C-terminal domain HHJ59_09470 PF02779 Transketolase, pyrimidine binding domain HHJ59_09470 PF00456 Transketolase, thiamine diphosphate binding domain HHJ59_09475 PF00596 Class II Aldolase and Adducin N-terminal domain HHJ59_09480 PF01261 Xylose isomerase-like TIM barrel HHJ59_09485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ59_09485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ59_09490 PF03480 Bacterial extracellular solute-binding protein, family 7 HHJ59_09495 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HHJ59_09500 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HHJ59_09505 PF04074 YhcH/YjgK/YiaL HHJ59_09510 PF02615 Malate/L-lactate dehydrogenase HHJ59_09515 PF01614 Bacterial transcriptional regulator HHJ59_09515 PF09339 IclR helix-turn-helix domain HHJ59_09520 PF02810 SEC-C motif HHJ59_09525 PF03631 Virulence factor BrkB HHJ59_09530 PF02580 D-Tyr-tRNA(Tyr) deacylase HHJ59_09535 PF00072 Response regulator receiver domain HHJ59_09535 PF00196 Bacterial regulatory proteins, luxR family HHJ59_09540 PF12633 Adenylate cyclase NT domain HHJ59_09540 PF01295 Adenylate cyclase, class-I HHJ59_09545 PF03900 Porphobilinogen deaminase, C-terminal domain HHJ59_09545 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HHJ59_09550 PF02602 Uroporphyrinogen-III synthase HemD HHJ59_09555 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HHJ59_09560 PF07219 HemY protein N-terminus HHJ59_09570 PF00202 Aminotransferase class-III HHJ59_09575 PF00282 Pyridoxal-dependent decarboxylase conserved domain HHJ59_09580 PF01078 Magnesium chelatase, subunit ChlI HHJ59_09580 PF13335 Magnesium chelatase, subunit ChlI C-terminal HHJ59_09585 PF02390 Putative methyltransferase HHJ59_09590 PF04320 Protein with unknown function (DUF469) HHJ59_09595 PF12390 Selenocysteine synthase N terminal HHJ59_09595 PF03841 L-seryl-tRNA selenium transferase HHJ59_09600 PF09107 Elongation factor SelB, winged helix HHJ59_09600 PF00009 Elongation factor Tu GTP binding domain HHJ59_09600 PF09106 Elongation factor SelB, winged helix HHJ59_09600 PF03144 Elongation factor Tu domain 2 HHJ59_09605 PF01479 S4 domain HHJ59_09605 PF00849 RNA pseudouridylate synthase HHJ59_09610 PF00575 S1 RNA binding domain HHJ59_09610 PF12111 Polyribonucleotide phosphorylase C terminal HHJ59_09610 PF10150 Ribonuclease E/G family HHJ59_09620 PF01678 Diaminopimelate epimerase HHJ59_09625 PF00004 ATPase family associated with various cellular activities (AAA) HHJ59_09625 PF07724 AAA domain (Cdc48 subfamily) HHJ59_09625 PF17871 AAA lid domain HHJ59_09625 PF10431 C-terminal, D2-small domain, of ClpB protein HHJ59_09625 PF02861 Clp amino terminal domain, pathogenicity island component HHJ59_09630 PF00378 Enoyl-CoA hydratase/isomerase HHJ59_09640 PF13378 Enolase C-terminal domain-like HHJ59_09645 PF01220 Dehydroquinase class II HHJ59_09650 PF00364 Biotin-requiring enzyme HHJ59_09655 PF02785 Biotin carboxylase C-terminal domain HHJ59_09655 PF00289 Biotin carboxylase, N-terminal domain HHJ59_09655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HHJ59_09660 PF06196 Protein of unknown function (DUF997) HHJ59_09665 PF00474 Sodium:solute symporter family HHJ59_09675 PF01207 Dihydrouridine synthase (Dus) HHJ59_09680 PF02954 Bacterial regulatory protein, Fis family HHJ59_09685 PF00180 Isocitrate/isopropylmalate dehydrogenase HHJ59_09690 PF00849 RNA pseudouridylate synthase HHJ59_09695 PF00293 NUDIX domain HHJ59_09700 PF07274 Protein of unknown function (DUF1440) HHJ59_09705 PF00923 Transaldolase/Fructose-6-phosphate aldolase HHJ59_09710 PF03352 Methyladenine glycosylase HHJ59_09715 PF04453 LPS transport system D HHJ59_09715 PF03968 OstA-like protein HHJ59_09720 PF03498 Cytolethal distending toxin A/C domain HHJ59_09725 PF03372 Endonuclease/Exonuclease/phosphatase family HHJ59_09730 PF03498 Cytolethal distending toxin A/C domain HHJ59_09735 PF01037 Lrp/AsnC ligand binding domain HHJ59_09735 PF13404 AsnC-type helix-turn-helix domain HHJ59_09740 PF03590 Aspartate-ammonia ligase HHJ59_09760 PF00585 C-terminal regulatory domain of Threonine dehydratase HHJ59_09760 PF00291 Pyridoxal-phosphate dependent enzyme HHJ59_09770 PF00920 Dehydratase family HHJ59_09780 PF00205 Thiamine pyrophosphate enzyme, central domain HHJ59_09780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HHJ59_09780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HHJ59_09790 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HHJ59_09795 PF12146 Serine aminopeptidase, S33 HHJ59_09800 PF00440 Bacterial regulatory proteins, tetR family HHJ59_09805 PF03466 LysR substrate binding domain HHJ59_09805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_09810 PF00462 Glutaredoxin HHJ59_09810 PF08534 Redoxin HHJ59_09815 PF04102 SlyX HHJ59_09820 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HHJ59_09820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HHJ59_09825 PF08348 YheO-like PAS domain HHJ59_09825 PF13309 HTH domain HHJ59_09830 PF02635 DsrE/DsrF-like family HHJ59_09835 PF02635 DsrE/DsrF-like family HHJ59_09850 PF00164 Ribosomal protein S12/S23 HHJ59_09855 PF00177 Ribosomal protein S7p/S5e HHJ59_09860 PF00679 Elongation factor G C-terminus HHJ59_09860 PF14492 Elongation Factor G, domain II HHJ59_09860 PF03764 Elongation factor G, domain IV HHJ59_09860 PF00009 Elongation factor Tu GTP binding domain HHJ59_09860 PF03144 Elongation factor Tu domain 2 HHJ59_09865 PF03144 Elongation factor Tu domain 2 HHJ59_09865 PF00009 Elongation factor Tu GTP binding domain HHJ59_09865 PF03143 Elongation factor Tu C-terminal domain HHJ59_09870 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HHJ59_09875 PF00467 KOW motif HHJ59_09875 PF02357 Transcription termination factor nusG HHJ59_09895 PF00298 Ribosomal protein L11, RNA binding domain HHJ59_09895 PF03946 Ribosomal protein L11, N-terminal domain HHJ59_09900 PF00687 Ribosomal protein L1p/L10e family HHJ59_09905 PF00466 Ribosomal protein L10 HHJ59_09910 PF00542 Ribosomal protein L7/L12 C-terminal domain HHJ59_09910 PF16320 Ribosomal protein L7/L12 dimerisation domain HHJ59_09915 PF04563 RNA polymerase beta subunit HHJ59_09915 PF04561 RNA polymerase Rpb2, domain 2 HHJ59_09915 PF04565 RNA polymerase Rpb2, domain 3 HHJ59_09915 PF10385 RNA polymerase beta subunit external 1 domain HHJ59_09915 PF04560 RNA polymerase Rpb2, domain 7 HHJ59_09915 PF00562 RNA polymerase Rpb2, domain 6 HHJ59_09920 PF04998 RNA polymerase Rpb1, domain 5 HHJ59_09920 PF00623 RNA polymerase Rpb1, domain 2 HHJ59_09920 PF04997 RNA polymerase Rpb1, domain 1 HHJ59_09920 PF05000 RNA polymerase Rpb1, domain 4 HHJ59_09920 PF04983 RNA polymerase Rpb1, domain 3 HHJ59_09925 PF01184 GPR1/FUN34/yaaH family HHJ59_09930 PF00486 Transcriptional regulatory protein, C terminal HHJ59_09930 PF00072 Response regulator receiver domain HHJ59_09935 PF04355 SmpA / OmlA family HHJ59_09940 PF04245 37-kD nucleoid-associated bacterial protein HHJ59_09945 PF07208 Protein of unknown function (DUF1414) HHJ59_09950 PF00884 Sulfatase HHJ59_09950 PF11893 Domain of unknown function (DUF3413) HHJ59_09960 PF01207 Dihydrouridine synthase (Dus) HHJ59_09965 PF05099 Tellurite resistance protein TerB HHJ59_09965 PF00226 DnaJ domain HHJ59_09970 PF00156 Phosphoribosyl transferase domain HHJ59_09975 PF01138 3' exoribonuclease family, domain 1 HHJ59_09975 PF03725 3' exoribonuclease family, domain 2 HHJ59_09980 PF03755 YicC-like family, N-terminal region HHJ59_09980 PF08340 Domain of unknown function (DUF1732) HHJ59_09985 PF01571 Aminomethyltransferase folate-binding domain HHJ59_09990 PF12804 MobA-like NTP transferase domain HHJ59_09995 PF06288 Protein of unknown function (DUF1040) HHJ59_10000 PF01323 DSBA-like thioredoxin domain HHJ59_10005 PF04219 Protein of unknown function, DUF HHJ59_10010 PF05958 tRNA (Uracil-5-)-methyltransferase HHJ59_10015 PF04445 Putative SAM-dependent methyltransferase HHJ59_10020 PF04461 Protein of unknown function (DUF520) HHJ59_10025 PF18429 Domain of unknown function (DUF5609) HHJ59_10030 PF10144 Bacterial virulence factor haemolysin HHJ59_10035 PF01649 Ribosomal protein S20 HHJ59_10040 PF03023 Lipid II flippase MurJ HHJ59_10045 PF01103 Surface antigen HHJ59_10045 PF17243 POTRA domain TamA domain 1 HHJ59_10050 PF04357 TamB, inner membrane protein subunit of TAM complex HHJ59_10055 PF02541 Ppx/GppA phosphatase family HHJ59_10060 PF05552 Conserved TM helix HHJ59_10060 PF00924 Mechanosensitive ion channel HHJ59_10065 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ59_10065 PF12804 MobA-like NTP transferase domain HHJ59_10075 PF01925 Sulfite exporter TauE/SafE HHJ59_10080 PF03702 Anhydro-N-acetylmuramic acid kinase HHJ59_10090 PF01479 S4 domain HHJ59_10090 PF00849 RNA pseudouridylate synthase HHJ59_10095 PF13525 Outer membrane lipoprotein HHJ59_10100 PF05872 Bacterial protein of unknown function (DUF853) HHJ59_10105 PF04393 Protein of unknown function (DUF535) HHJ59_10110 PF12762 ISXO2-like transposase domain HHJ59_10115 PF00909 Ammonium Transporter Family HHJ59_10115 PF00909 Ammonium Transporter Family HHJ59_10120 PF00543 Nitrogen regulatory protein P-II HHJ59_10125 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HHJ59_10125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HHJ59_10125 PF02142 MGS-like domain HHJ59_10130 PF02567 Phenazine biosynthesis-like protein HHJ59_10135 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HHJ59_10135 PF00117 Glutamine amidotransferase class-I HHJ59_10140 PF04333 MlaA lipoprotein HHJ59_10145 PF03887 YfbU domain HHJ59_10150 PF02774 Semialdehyde dehydrogenase, dimerisation domain HHJ59_10150 PF01118 Semialdehyde dehydrogenase, NAD binding domain HHJ59_10155 PF00271 Helicase conserved C-terminal domain HHJ59_10155 PF00270 DEAD/DEAH box helicase HHJ59_10160 PF05175 Methyltransferase small domain HHJ59_10165 PF04261 Dyp-type peroxidase family HHJ59_10170 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HHJ59_10175 PF00459 Inositol monophosphatase family HHJ59_10180 PF00588 SpoU rRNA Methylase family HHJ59_10185 PF02082 Transcriptional regulator HHJ59_10190 PF00266 Aminotransferase class-V HHJ59_10195 PF01592 NifU-like N terminal domain HHJ59_10200 PF01521 Iron-sulphur cluster biosynthesis HHJ59_10205 PF07743 HSCB C-terminal oligomerisation domain HHJ59_10210 PF07743 HSCB C-terminal oligomerisation domain HHJ59_10215 PF00012 Hsp70 protein HHJ59_10220 PF00111 2Fe-2S iron-sulfur cluster binding domain HHJ59_10225 PF04262 Glutamate-cysteine ligase HHJ59_10225 PF18419 ATP-grasp-like domain HHJ59_10225 PF02655 ATP-grasp domain HHJ59_10235 PF03613 PTS system mannose/fructose/sorbose family IID component HHJ59_10240 PF03609 PTS system sorbose-specific iic component HHJ59_10245 PF03830 PTS system sorbose subfamily IIB component HHJ59_10245 PF03610 PTS system fructose IIA component HHJ59_10255 PF00535 Glycosyl transferase family 2 HHJ59_10260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HHJ59_10265 PF00886 Ribosomal protein S16 HHJ59_10270 PF01782 RimM N-terminal domain HHJ59_10270 PF05239 PRC-barrel domain HHJ59_10275 PF01746 tRNA (Guanine-1)-methyltransferase HHJ59_10280 PF01245 Ribosomal protein L19 HHJ59_10285 PF00884 Sulfatase HHJ59_10290 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HHJ59_10290 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HHJ59_10295 PF00390 Malic enzyme, N-terminal domain HHJ59_10295 PF03949 Malic enzyme, NAD binding domain HHJ59_10295 PF01515 Phosphate acetyl/butaryl transferase HHJ59_10300 PF01479 S4 domain HHJ59_10300 PF00849 RNA pseudouridylate synthase HHJ59_10305 PF07690 Major Facilitator Superfamily HHJ59_10310 PF09278 MerR, DNA binding HHJ59_10310 PF00376 MerR family regulatory protein HHJ59_10315 PF00884 Sulfatase HHJ59_10315 PF08019 Phosphoethanolamine transferase EptA/EptB HHJ59_10320 PF08501 Shikimate dehydrogenase substrate binding domain HHJ59_10325 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ59_10325 PF06426 Serine acetyltransferase, N-terminal HHJ59_10330 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HHJ59_10330 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HHJ59_10335 PF02556 Preprotein translocase subunit SecB HHJ59_10340 PF00581 Rhodanese-like domain HHJ59_10345 PF03605 Anaerobic c4-dicarboxylate membrane transporter HHJ59_10350 PF00881 Nitroreductase family HHJ59_10360 PF13091 PLD-like domain HHJ59_10365 PF00588 SpoU rRNA Methylase family HHJ59_10365 PF08032 RNA 2'-O ribose methyltransferase substrate binding HHJ59_10370 PF00037 4Fe-4S binding domain HHJ59_10375 PF00445 Ribonuclease T2 family HHJ59_10380 PF00162 Phosphoglycerate kinase HHJ59_10385 PF01116 Fructose-bisphosphate aldolase class-II HHJ59_10395 PF00294 pfkB family carbohydrate kinase HHJ59_10400 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ59_10405 PF13784 Fic/DOC family N-terminal HHJ59_10405 PF02661 Fic/DOC family HHJ59_10410 PF00551 Formyl transferase HHJ59_10410 PF02911 Formyl transferase, C-terminal domain HHJ59_10415 PF01189 16S rRNA methyltransferase RsmB/F HHJ59_10415 PF01029 NusB family HHJ59_10420 PF02254 TrkA-N domain HHJ59_10420 PF02080 TrkA-C domain HHJ59_10425 PF06877 Regulator of ribonuclease activity B HHJ59_10435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HHJ59_10440 PF03880 DbpA RNA binding domain HHJ59_10440 PF00271 Helicase conserved C-terminal domain HHJ59_10440 PF00270 DEAD/DEAH box helicase HHJ59_10450 PF03725 3' exoribonuclease family, domain 2 HHJ59_10450 PF00575 S1 RNA binding domain HHJ59_10450 PF00013 KH domain HHJ59_10450 PF01138 3' exoribonuclease family, domain 1 HHJ59_10450 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HHJ59_10455 PF03264 NapC/NirT cytochrome c family, N-terminal region HHJ59_10460 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HHJ59_10465 PF12837 4Fe-4S binding domain HHJ59_10465 PF12801 4Fe-4S binding domain HHJ59_10470 PF12838 4Fe-4S dicluster domain HHJ59_10470 PF12800 4Fe-4S binding domain HHJ59_10475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HHJ59_10475 PF10518 TAT (twin-arginine translocation) pathway signal sequence HHJ59_10475 PF00384 Molybdopterin oxidoreductase HHJ59_10475 PF01568 Molydopterin dinucleotide binding domain HHJ59_10480 PF03927 NapD protein HHJ59_10485 PF07730 Histidine kinase HHJ59_10485 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HHJ59_10485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ59_10485 PF00672 HAMP domain HHJ59_10490 PF01565 FAD binding domain HHJ59_10490 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HHJ59_10500 PF04542 Sigma-70 region 2 HHJ59_10500 PF00140 Sigma-70 factor, region 1.2 HHJ59_10500 PF04545 Sigma-70, region 4 HHJ59_10505 PF01106 NifU-like domain HHJ59_10505 PF01521 Iron-sulphur cluster biosynthesis HHJ59_10510 PF00156 Phosphoribosyl transferase domain HHJ59_10515 PF04748 Divergent polysaccharide deacetylase HHJ59_10520 PF01551 Peptidase family M23 HHJ59_10525 PF00300 Histidine phosphatase superfamily (branch 1) HHJ59_10530 PF01206 Sulfurtransferase TusA HHJ59_10535 PF01205 Uncharacterized protein family UPF0029 HHJ59_10535 PF09186 Domain of unknown function (DUF1949) HHJ59_10540 PF02386 Cation transport protein HHJ59_10545 PF12724 Flavodoxin domain HHJ59_10570 PF00238 Ribosomal protein L14p/L23e HHJ59_10575 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HHJ59_10575 PF00467 KOW motif HHJ59_10580 PF00281 Ribosomal protein L5 HHJ59_10580 PF00673 ribosomal L5P family C-terminus HHJ59_10585 PF00253 Ribosomal protein S14p/S29e HHJ59_10590 PF00410 Ribosomal protein S8 HHJ59_10595 PF00347 Ribosomal protein L6 HHJ59_10600 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HHJ59_10605 PF00333 Ribosomal protein S5, N-terminal domain HHJ59_10605 PF03719 Ribosomal protein S5, C-terminal domain HHJ59_10610 PF00327 Ribosomal protein L30p/L7e HHJ59_10615 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HHJ59_10620 PF00344 SecY translocase HHJ59_10625 PF00444 Ribosomal protein L36 HHJ59_10630 PF00416 Ribosomal protein S13/S18 HHJ59_10635 PF00411 Ribosomal protein S11 HHJ59_10640 PF01479 S4 domain HHJ59_10640 PF00163 Ribosomal protein S4/S9 N-terminal domain HHJ59_10645 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HHJ59_10645 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HHJ59_10645 PF01000 RNA polymerase Rpb3/RpoA insert domain HHJ59_10650 PF01196 Ribosomal protein L17 HHJ59_10655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HHJ59_10660 PF04380 Membrane fusogenic activity HHJ59_10665 PF01467 Cytidylyltransferase-like HHJ59_10665 PF13521 AAA domain HHJ59_10670 PF00149 Calcineurin-like phosphoesterase HHJ59_10680 PF13356 Arm DNA-binding domain HHJ59_10680 PF00589 Phage integrase family HHJ59_10760 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HHJ59_10760 PF11867 Domain of unknown function (DUF3387) HHJ59_10760 PF18766 SWI2/SNF2 ATPase HHJ59_10780 PF01420 Type I restriction modification DNA specificity domain HHJ59_10785 PF02384 N-6 DNA Methylase HHJ59_10790 PF03923 Uncharacterized lipoprotein HHJ59_10795 PF01722 BolA-like protein HHJ59_10800 PF11973 NQRA C-terminal domain HHJ59_10800 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HHJ59_10805 PF03116 NQR2, RnfD, RnfE family HHJ59_10810 PF04205 FMN-binding domain HHJ59_10815 PF02508 Rnf-Nqr subunit, membrane protein HHJ59_10820 PF02508 Rnf-Nqr subunit, membrane protein HHJ59_10825 PF00970 Oxidoreductase FAD-binding domain HHJ59_10825 PF00111 2Fe-2S iron-sulfur cluster binding domain HHJ59_10825 PF00175 Oxidoreductase NAD-binding domain HHJ59_10830 PF02424 ApbE family HHJ59_10835 PF04400 (Na+)-NQR maturation NqrM HHJ59_10845 PF00534 Glycosyl transferases group 1 HHJ59_10845 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HHJ59_10850 PF01467 Cytidylyltransferase-like HHJ59_10855 PF03616 Sodium/glutamate symporter HHJ59_10860 PF00485 Phosphoribulokinase / Uridine kinase family HHJ59_10885 PF03144 Elongation factor Tu domain 2 HHJ59_10885 PF03143 Elongation factor Tu C-terminal domain HHJ59_10885 PF00009 Elongation factor Tu GTP binding domain HHJ59_10890 PF09297 NADH pyrophosphatase zinc ribbon domain HHJ59_10890 PF00293 NUDIX domain HHJ59_10895 PF01208 Uroporphyrinogen decarboxylase (URO-D) HHJ59_10900 PF04222 Protein of unknown function (DUF416) HHJ59_10905 PF00216 Bacterial DNA-binding protein HHJ59_10910 PF00455 DeoR C terminal sensor domain HHJ59_10910 PF08220 DeoR-like helix-turn-helix domain HHJ59_10915 PF01380 SIS domain HHJ59_10930 PF01243 Pyridoxamine 5'-phosphate oxidase HHJ59_10930 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HHJ59_10935 PF07690 Major Facilitator Superfamily HHJ59_10940 PF03205 Molybdopterin guanine dinucleotide synthesis protein B HHJ59_10950 PF17188 MucB/RseB C-terminal domain HHJ59_10950 PF03888 MucB/RseB N-terminal domain HHJ59_10955 PF03872 Anti sigma-E protein RseA, N-terminal domain HHJ59_10955 PF03873 Anti sigma-E protein RseA, C-terminal domain HHJ59_10960 PF08281 Sigma-70, region 4 HHJ59_10960 PF04542 Sigma-70 region 2 HHJ59_10965 PF03937 Flavinator of succinate dehydrogenase HHJ59_10975 PF13649 Methyltransferase domain HHJ59_10990 PF07669 Eco57I restriction-modification methylase HHJ59_10995 PF04851 Type III restriction enzyme, res subunit HHJ59_11000 PF18693 TRAM domain HHJ59_11000 PF04055 Radical SAM superfamily HHJ59_11000 PF00919 Uncharacterized protein family UPF0004 HHJ59_11005 PF01451 Low molecular weight phosphotyrosine protein phosphatase HHJ59_11010 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ59_11010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HHJ59_11015 PF01493 GXGXG motif HHJ59_11015 PF00310 Glutamine amidotransferases class-II HHJ59_11015 PF04898 Glutamate synthase central domain HHJ59_11015 PF01645 Conserved region in glutamate synthase HHJ59_11025 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HHJ59_11030 PF00664 ABC transporter transmembrane region HHJ59_11030 PF00005 ABC transporter HHJ59_11035 PF01624 MutS domain I HHJ59_11035 PF05190 MutS family domain IV HHJ59_11035 PF00488 MutS domain V HHJ59_11035 PF05192 MutS domain III HHJ59_11035 PF05188 MutS domain II HHJ59_11040 PF00696 Amino acid kinase family HHJ59_11050 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HHJ59_11060 PF06545 Protein of unknown function (DUF1116) HHJ59_11065 PF00549 CoA-ligase HHJ59_11065 PF02629 CoA binding domain HHJ59_11070 PF00857 Isochorismatase family HHJ59_11075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_11075 PF03466 LysR substrate binding domain HHJ59_11085 PF06545 Protein of unknown function (DUF1116) HHJ59_11090 PF02629 CoA binding domain HHJ59_11090 PF00549 CoA-ligase HHJ59_11095 PF12796 Ankyrin repeats (3 copies) HHJ59_11100 PF03466 LysR substrate binding domain HHJ59_11100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ59_11105 PF00154 recA bacterial DNA recombination protein HHJ59_11110 PF02631 RecX family HHJ59_11115 PF01797 Transposase IS200 like HHJ59_11120 PF12323 Helix-turn-helix domain HHJ59_11120 PF07282 Putative transposase DNA-binding domain HHJ59_11120 PF01385 Probable transposase HHJ59_11125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HHJ59_11125 PF03129 Anticodon binding domain HHJ59_11125 PF04073 Aminoacyl-tRNA editing domain HHJ59_11130 PF00005 ABC transporter HHJ59_11135 PF00528 Binding-protein-dependent transport system inner membrane component HHJ59_11140 PF00497 Bacterial extracellular solute-binding proteins, family 3 HHJ59_11145 PF06969 HemN C-terminal domain HHJ59_11145 PF04055 Radical SAM superfamily HHJ59_11150 PF10675 Protein of unknown function (DUF2489) HHJ59_11155 PF04220 Der GTPase activator (YihI) HHJ59_11160 PF00849 RNA pseudouridylate synthase HHJ59_11165 PF00176 SNF2 family N-terminal domain HHJ59_11165 PF12137 RNA polymerase recycling family C-terminal HHJ59_11165 PF00271 Helicase conserved C-terminal domain HHJ59_11165 PF18337 RapA N-terminal Tudor like domain HHJ59_11165 PF18339 RapA N-terminal Tudor like domain 1 HHJ59_11170 PF04973 Nicotinamide mononucleotide transporter HHJ59_11175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ59_11175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ59_11180 PF12762 ISXO2-like transposase domain HHJ59_11185 PF00171 Aldehyde dehydrogenase family HHJ59_11190 PF04962 KduI/IolB family HHJ59_11195 PF00480 ROK family HHJ59_11195 PF01047 MarR family HHJ59_11200 PF00121 Triosephosphate isomerase HHJ59_11220 PF02278 Polysaccharide lyase family 8, super-sandwich domain HHJ59_11220 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HHJ59_11220 PF09093 Lyase, catalytic HHJ59_11220 PF09092 Lyase, N terminal HHJ59_11235 PF07690 Major Facilitator Superfamily HHJ59_11240 PF00596 Class II Aldolase and Adducin N-terminal domain HHJ59_11245 PF05025 RbsD / FucU transport protein family HHJ59_11250 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ59_11250 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ59_11255 PF07882 L-fucose isomerase, second N-terminal domain HHJ59_11255 PF02952 L-fucose isomerase, C-terminal domain HHJ59_11255 PF07881 L-fucose isomerase, first N-terminal domain HHJ59_11260 PF08220 DeoR-like helix-turn-helix domain HHJ59_11260 PF00455 DeoR C terminal sensor domain HHJ59_11265 PF01791 DeoC/LacD family aldolase HHJ59_11270 PF01370 NAD dependent epimerase/dehydratase family HHJ59_11285 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HHJ59_11290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HHJ59_11295 PF13580 SIS domain HHJ59_11300 PF00265 Thymidine kinase HHJ59_11310 PF00814 Glycoprotease family HHJ59_11315 PF01165 Ribosomal protein S21 HHJ59_11320 PF10410 DnaB-helicase binding domain of primase HHJ59_11320 PF08278 DNA primase DnaG DnaB-binding HHJ59_11320 PF08275 DNA primase catalytic core, N-terminal domain HHJ59_11320 PF01807 CHC2 zinc finger HHJ59_11325 PF04546 Sigma-70, non-essential region HHJ59_11325 PF04539 Sigma-70 region 3 HHJ59_11325 PF04542 Sigma-70 region 2 HHJ59_11325 PF00140 Sigma-70 factor, region 1.2 HHJ59_11325 PF03979 Sigma-70 factor, region 1.1 HHJ59_11325 PF04545 Sigma-70, region 4 HHJ59_11340 PF04175 Protein of unknown function (DUF406) HHJ59_11345 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HHJ59_11345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HHJ59_11350 PF01909 Nucleotidyltransferase domain HHJ59_11355 PF08780 Nucleotidyltransferase substrate binding protein like HHJ59_11360 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HHJ59_11365 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HHJ59_11365 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HHJ59_11370 PF00459 Inositol monophosphatase family HHJ59_11375 PF03169 OPT oligopeptide transporter protein HHJ59_11380 PF01479 S4 domain HHJ59_11385 PF01430 Hsp33 protein HHJ59_11390 PF00356 Bacterial regulatory proteins, lacI family HHJ59_11400 PF08240 Alcohol dehydrogenase GroES-like domain HHJ59_11400 PF00107 Zinc-binding dehydrogenase HHJ59_11405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ59_11405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ59_11410 PF00005 ABC transporter HHJ59_11415 PF02653 Branched-chain amino acid transport system / permease component HHJ59_11420 PF13407 Periplasmic binding protein domain HHJ59_11425 PF01293 Phosphoenolpyruvate carboxykinase HHJ59_11430 PF01340 Met Apo-repressor, MetJ HHJ59_11435 PF00338 Ribosomal protein S10p/S20e HHJ59_11440 PF00297 Ribosomal protein L3 HHJ59_11445 PF00573 Ribosomal protein L4/L1 family HHJ59_11450 PF00276 Ribosomal protein L23 HHJ59_11455 PF03947 Ribosomal Proteins L2, C-terminal domain HHJ59_11455 PF00181 Ribosomal Proteins L2, RNA binding domain HHJ59_11460 PF00203 Ribosomal protein S19 HHJ59_11465 PF00237 Ribosomal protein L22p/L17e HHJ59_11470 PF00189 Ribosomal protein S3, C-terminal domain HHJ59_11470 PF07650 KH domain HHJ59_11475 PF00252 Ribosomal protein L16p/L10e HHJ59_11480 PF00831 Ribosomal L29 protein HHJ59_11485 PF00366 Ribosomal protein S17 HHJ59_11495 PF14659 Phage integrase, N-terminal SAM-like domain HHJ59_11495 PF13356 Arm DNA-binding domain HHJ59_11495 PF00589 Phage integrase family HHJ59_11585 PF03592 Terminase small subunit HHJ59_11655 PF02096 60Kd inner membrane protein HHJ59_11655 PF14849 YidC periplasmic domain HHJ59_11660 PF01809 Putative membrane protein insertion efficiency factor HHJ59_11665 PF00825 Ribonuclease P HHJ59_11670 PF00468 Ribosomal protein L34