locus-tag class description HHJ60_00005 PF08299 Bacterial dnaA protein helix-turn-helix HHJ60_00005 PF11638 DnaA N-terminal domain HHJ60_00005 PF00308 Bacterial dnaA protein HHJ60_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HHJ60_00010 PF02767 DNA polymerase III beta subunit, central domain HHJ60_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HHJ60_00015 PF02463 RecF/RecN/SMC N terminal domain HHJ60_00020 PF02592 Putative vitamin uptake transporter HHJ60_00025 PF11967 Recombination protein O N terminal HHJ60_00025 PF02565 Recombination protein O C terminal HHJ60_00030 PF05958 tRNA (Uracil-5-)-methyltransferase HHJ60_00030 PF01938 TRAM domain HHJ60_00035 PF13291 ACT domain HHJ60_00035 PF04607 Region found in RelA / SpoT proteins HHJ60_00035 PF02824 TGS domain HHJ60_00040 PF01219 Prokaryotic diacylglycerol kinase HHJ60_00045 PF17763 Glutaminase/Asparaginase C-terminal domain HHJ60_00045 PF00710 Asparaginase, N-terminal HHJ60_00055 PF02152 Dihydroneopterin aldolase HHJ60_00060 PF02660 Glycerol-3-phosphate acyltransferase HHJ60_00065 PF01327 Polypeptide deformylase HHJ60_00070 PF17358 Family of unknown function (DUF5384) HHJ60_00075 PF05433 Glycine zipper 2TM domain HHJ60_00080 PF00205 Thiamine pyrophosphate enzyme, central domain HHJ60_00080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HHJ60_00080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HHJ60_00085 PF01261 Xylose isomerase-like TIM barrel HHJ60_00090 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ60_00090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ60_00095 PF05726 Pirin C-terminal cupin domain HHJ60_00095 PF02678 Pirin HHJ60_00100 PF03358 NADPH-dependent FMN reductase HHJ60_00105 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HHJ60_00105 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HHJ60_00105 PF02769 AIR synthase related protein, C-terminal domain HHJ60_00110 PF01472 PUA domain HHJ60_00110 PF00696 Amino acid kinase family HHJ60_00120 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HHJ60_00125 PF00005 ABC transporter HHJ60_00130 PF01061 ABC-2 type transporter HHJ60_00140 PF03951 Glutamine synthetase, beta-Grasp domain HHJ60_00140 PF00120 Glutamine synthetase, catalytic domain HHJ60_00150 PF02773 S-adenosylmethionine synthetase, C-terminal domain HHJ60_00150 PF02772 S-adenosylmethionine synthetase, central domain HHJ60_00150 PF00438 S-adenosylmethionine synthetase, N-terminal domain HHJ60_00155 PF00795 Carbon-nitrogen hydrolase HHJ60_00160 PF03471 Transporter associated domain HHJ60_00160 PF00571 CBS domain HHJ60_00165 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_00170 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_00175 PF00497 Bacterial extracellular solute-binding proteins, family 3 HHJ60_00180 PF00005 ABC transporter HHJ60_00185 PF01594 AI-2E family transporter HHJ60_00190 PF03960 ArsC family HHJ60_00195 PF03889 Alternative ribosome-rescue factor A HHJ60_00200 PF17347 Family of unknown function (DUF5377) HHJ60_00205 PF00448 SRP54-type protein, GTPase domain HHJ60_00205 PF02881 SRP54-type protein, helical bundle domain HHJ60_00205 PF02978 Signal peptide binding domain HHJ60_00210 PF01578 Cytochrome C assembly protein HHJ60_00215 PF01595 Cyclin M transmembrane N-terminal domain HHJ60_00215 PF03471 Transporter associated domain HHJ60_00215 PF00571 CBS domain HHJ60_00220 PF01618 MotA/TolQ/ExbB proton channel family HHJ60_00225 PF02472 Biopolymer transport protein ExbD/TolR HHJ60_00230 PF03544 Gram-negative bacterial TonB protein C-terminal HHJ60_00235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HHJ60_00235 PF02378 Phosphotransferase system, EIIC HHJ60_00235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HHJ60_00240 PF08125 Mannitol dehydrogenase C-terminal domain HHJ60_00240 PF01232 Mannitol dehydrogenase Rossmann domain HHJ60_00245 PF05068 Mannitol repressor HHJ60_00250 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HHJ60_00255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HHJ60_00255 PF01612 3'-5' exonuclease HHJ60_00255 PF01367 5'-3' exonuclease, C-terminal SAM fold HHJ60_00255 PF00476 DNA polymerase family A HHJ60_00260 PF02080 TrkA-C domain HHJ60_00260 PF00999 Sodium/hydrogen exchanger family HHJ60_00260 PF03471 Transporter associated domain HHJ60_00265 PF02028 BCCT, betaine/carnitine/choline family transporter HHJ60_00285 PF05698 Bacterial trigger factor protein (TF) C-terminus HHJ60_00285 PF05697 Bacterial trigger factor protein (TF) HHJ60_00285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HHJ60_00290 PF00574 Clp protease HHJ60_00295 PF07724 AAA domain (Cdc48 subfamily) HHJ60_00295 PF10431 C-terminal, D2-small domain, of ClpB protein HHJ60_00295 PF06689 ClpX C4-type zinc finger HHJ60_00300 PF00206 Lyase HHJ60_00300 PF10415 Fumarase C C-terminus HHJ60_00305 PF00501 AMP-binding enzyme HHJ60_00310 PF00583 Acetyltransferase (GNAT) family HHJ60_00315 PF03603 DNA polymerase III psi subunit HHJ60_00320 PF00004 ATPase family associated with various cellular activities (AAA) HHJ60_00320 PF10431 C-terminal, D2-small domain, of ClpB protein HHJ60_00320 PF07724 AAA domain (Cdc48 subfamily) HHJ60_00325 PF00227 Proteasome subunit HHJ60_00330 PF01040 UbiA prenyltransferase family HHJ60_00335 PF00581 Rhodanese-like domain HHJ60_00340 PF05525 Branched-chain amino acid transport protein HHJ60_00345 PF17674 HHH domain HHJ60_00345 PF00575 S1 RNA binding domain HHJ60_00345 PF09371 Tex-like protein N-terminal domain HHJ60_00345 PF16921 Tex protein YqgF-like domain HHJ60_00360 PF03449 Transcription elongation factor, N-terminal HHJ60_00360 PF01272 Transcription elongation factor, GreA/GreB, C-term HHJ60_00370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HHJ60_00375 PF00873 AcrB/AcrD/AcrF family HHJ60_00380 PF03932 CutC family HHJ60_00385 PF02378 Phosphotransferase system, EIIC HHJ60_00390 PF01112 Asparaginase HHJ60_00395 PF00883 Cytosol aminopeptidase family, catalytic domain HHJ60_00395 PF02789 Cytosol aminopeptidase family, N-terminal domain HHJ60_00400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HHJ60_00405 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HHJ60_00415 PF03952 Enolase, N-terminal domain HHJ60_00415 PF00113 Enolase, C-terminal TIM barrel domain HHJ60_00420 PF07119 Protein of unknown function (DUF1375) HHJ60_00425 PF00580 UvrD/REP helicase N-terminal domain HHJ60_00425 PF13361 UvrD-like helicase C-terminal domain HHJ60_00445 PF00186 Dihydrofolate reductase HHJ60_00450 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HHJ60_00450 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HHJ60_00470 PF01207 Dihydrouridine synthase (Dus) HHJ60_00480 PF01048 Phosphorylase superfamily HHJ60_00485 PF01676 Metalloenzyme superfamily HHJ60_00490 PF07662 Na+ dependent nucleoside transporter C-terminus HHJ60_00490 PF01773 Na+ dependent nucleoside transporter N-terminus HHJ60_00490 PF07670 Nucleoside recognition HHJ60_00495 PF17283 SprT-like zinc ribbon domain HHJ60_00495 PF10263 SprT-like family HHJ60_00500 PF02462 Opacity family porin protein HHJ60_00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ60_00505 PF00183 Hsp90 protein HHJ60_00515 PF01648 4'-phosphopantetheinyl transferase superfamily HHJ60_00520 PF01145 SPFH domain / Band 7 family HHJ60_00525 PF01145 SPFH domain / Band 7 family HHJ60_00535 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HHJ60_00540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HHJ60_00540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HHJ60_00545 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) HHJ60_00545 PF08463 EcoEI R protein C-terminal HHJ60_00545 PF00271 Helicase conserved C-terminal domain HHJ60_00545 PF04851 Type III restriction enzyme, res subunit HHJ60_00550 PF02618 YceG-like family HHJ60_00555 PF02223 Thymidylate kinase HHJ60_00560 PF09115 DNA polymerase III, delta subunit, C terminal HHJ60_00565 PF01026 TatD related DNase HHJ60_00570 PF07509 Protein of unknown function (DUF1523) HHJ60_00575 PF00571 CBS domain HHJ60_00575 PF01595 Cyclin M transmembrane N-terminal domain HHJ60_00575 PF03471 Transporter associated domain HHJ60_00580 PF01197 Ribosomal protein L31 HHJ60_00585 PF17764 3′ DNA-binding domain (3′BD) HHJ60_00585 PF18074 Primosomal protein N C-terminal domain HHJ60_00585 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HHJ60_00585 PF00271 Helicase conserved C-terminal domain HHJ60_00585 PF00270 DEAD/DEAH box helicase HHJ60_00590 PF05036 Sporulation related domain HHJ60_00595 PF00174 Oxidoreductase molybdopterin binding domain HHJ60_00600 PF01794 Ferric reductase like transmembrane component HHJ60_00605 PF05958 tRNA (Uracil-5-)-methyltransferase HHJ60_00610 PF00933 Glycosyl hydrolase family 3 N terminal domain HHJ60_00620 PF01230 HIT domain HHJ60_00625 PF01226 Formate/nitrite transporter HHJ60_00630 PF02901 Pyruvate formate lyase-like HHJ60_00630 PF01228 Glycine radical HHJ60_00635 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HHJ60_00640 PF04055 Radical SAM superfamily HHJ60_00650 PF01263 Aldose 1-epimerase HHJ60_00655 PF00288 GHMP kinases N terminal domain HHJ60_00655 PF10509 Galactokinase galactose-binding signature HHJ60_00655 PF08544 GHMP kinases C terminal HHJ60_00660 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HHJ60_00660 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HHJ60_00665 PF13407 Periplasmic binding protein domain HHJ60_00670 PF00005 ABC transporter HHJ60_00675 PF02653 Branched-chain amino acid transport system / permease component HHJ60_00680 PF03918 Cytochrome C biogenesis protein HHJ60_00685 PF03918 Cytochrome C biogenesis protein HHJ60_00690 PF08534 Redoxin HHJ60_00695 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HHJ60_00695 PF01578 Cytochrome C assembly protein HHJ60_00700 PF03100 CcmE HHJ60_00705 PF04995 Heme exporter protein D (CcmD) HHJ60_00710 PF01578 Cytochrome C assembly protein HHJ60_00715 PF03379 CcmB protein HHJ60_00720 PF00005 ABC transporter HHJ60_00725 PF08502 LeuA allosteric (dimerisation) domain HHJ60_00725 PF00682 HMGL-like HHJ60_00730 PF00180 Isocitrate/isopropylmalate dehydrogenase HHJ60_00735 PF00330 Aconitase family (aconitate hydratase) HHJ60_00740 PF00694 Aconitase C-terminal domain HHJ60_00745 PF00308 Bacterial dnaA protein HHJ60_00750 PF00860 Permease family HHJ60_00760 PF04345 Chorismate lyase HHJ60_00765 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HHJ60_00765 PF01502 Phosphoribosyl-AMP cyclohydrolase HHJ60_00775 PF00977 Histidine biosynthesis protein HHJ60_00780 PF00977 Histidine biosynthesis protein HHJ60_00785 PF00578 AhpC/TSA family HHJ60_00790 PF00117 Glutamine amidotransferase class-I HHJ60_00795 PF17761 DUF1016 N-terminal domain HHJ60_00795 PF06250 YhcG PDDEXK nuclease domain HHJ60_00800 PF00475 Imidazoleglycerol-phosphate dehydratase HHJ60_00805 PF00155 Aminotransferase class I and II HHJ60_00815 PF00815 Histidinol dehydrogenase HHJ60_00820 PF08029 HisG, C-terminal domain HHJ60_00820 PF01634 ATP phosphoribosyltransferase HHJ60_00825 PF08241 Methyltransferase domain HHJ60_00830 PF03222 Tryptophan/tyrosine permease family HHJ60_00835 PF00719 Inorganic pyrophosphatase HHJ60_00840 PF07720 Tetratricopeptide repeat HHJ60_00840 PF01435 Peptidase family M48 HHJ60_00850 PF01551 Peptidase family M23 HHJ60_00850 PF01476 LysM domain HHJ60_00860 PF09335 SNARE associated Golgi protein HHJ60_00865 PF01975 Survival protein SurE HHJ60_00870 PF01142 tRNA pseudouridine synthase D (TruD) HHJ60_00875 PF02542 YgbB family HHJ60_00885 PF13419 Haloacid dehalogenase-like hydrolase HHJ60_00890 PF14602 Hexapeptide repeat of succinyl-transferase HHJ60_00890 PF12464 Maltose acetyltransferase HHJ60_00900 PF02664 S-Ribosylhomocysteinase (LuxS) HHJ60_00905 PF04055 Radical SAM superfamily HHJ60_00905 PF06969 HemN C-terminal domain HHJ60_00910 PF01725 Ham1 family HHJ60_00920 PF00860 Permease family HHJ60_00930 PF01370 NAD dependent epimerase/dehydratase family HHJ60_00935 PF07690 Major Facilitator Superfamily HHJ60_00940 PF01758 Sodium Bile acid symporter family HHJ60_00945 PF00072 Response regulator receiver domain HHJ60_00945 PF00989 PAS fold HHJ60_00945 PF01627 Hpt domain HHJ60_00945 PF18415 Histidine kinase receptor ArcB trans-membrane domain HHJ60_00945 PF00512 His Kinase A (phospho-acceptor) domain HHJ60_00945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ60_00950 PF01176 Translation initiation factor 1A / IF-1 HHJ60_00960 PF00883 Cytosol aminopeptidase family, catalytic domain HHJ60_00960 PF12404 Peptidase HHJ60_00965 PF00334 Nucleoside diphosphate kinase HHJ60_00970 PF00365 Phosphofructokinase HHJ60_00975 PF16916 Dimerisation domain of Zinc Transporter HHJ60_00975 PF01545 Cation efflux family HHJ60_00985 PF03883 Peroxide stress protein YaaA HHJ60_00990 PF03167 Uracil DNA glycosylase superfamily HHJ60_00995 PF01228 Glycine radical HHJ60_01000 PF03144 Elongation factor Tu domain 2 HHJ60_01000 PF06421 GTP-binding protein LepA C-terminus HHJ60_01000 PF00679 Elongation factor G C-terminus HHJ60_01000 PF00009 Elongation factor Tu GTP binding domain HHJ60_01005 PF10502 Signal peptidase, peptidase S26 HHJ60_01010 PF00035 Double-stranded RNA binding motif HHJ60_01010 PF14622 Ribonuclease-III-like HHJ60_01015 PF01926 50S ribosome-binding GTPase HHJ60_01015 PF07650 KH domain HHJ60_01020 PF01926 50S ribosome-binding GTPase HHJ60_01020 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HHJ60_01025 PF00575 S1 RNA binding domain HHJ60_01025 PF00773 RNB domain HHJ60_01025 PF17876 Cold shock domain HHJ60_01025 PF08461 Ribonuclease R winged-helix domain HHJ60_01025 PF08206 Ribonuclease B OB domain HHJ60_01030 PF00588 SpoU rRNA Methylase family HHJ60_01030 PF08032 RNA 2'-O ribose methyltransferase substrate binding HHJ60_01035 PF07690 Major Facilitator Superfamily HHJ60_01040 PF00529 HlyD membrane-fusion protein of T1SS HHJ60_01040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HHJ60_01045 PF01047 MarR family HHJ60_01055 PF03895 YadA-like membrane anchor domain HHJ60_01055 PF05662 Coiled stalk of trimeric autotransporter adhesin HHJ60_01055 PF05658 Head domain of trimeric autotransporter adhesin HHJ60_01060 PF01047 MarR family HHJ60_01065 PF03601 Conserved hypothetical protein 698 HHJ60_01070 PF17287 POTRA domain HHJ60_01070 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HHJ60_01070 PF08479 POTRA domain, ShlB-type HHJ60_01075 PF13332 Hemagglutinin repeat HHJ60_01075 PF05860 haemagglutination activity domain HHJ60_01075 PF04829 Pre-toxin domain with VENN motif HHJ60_01075 PF13332 Hemagglutinin repeat HHJ60_01075 PF04829 Pre-toxin domain with VENN motif HHJ60_01075 PF13018 Extended Signal Peptide of Type V secretion system HHJ60_01075 PF13018 Extended Signal Peptide of Type V secretion system HHJ60_01075 PF05860 haemagglutination activity domain HHJ60_01085 PF00545 ribonuclease HHJ60_01110 PF00545 ribonuclease HHJ60_01175 PF01926 50S ribosome-binding GTPase HHJ60_01175 PF01018 GTP1/OBG HHJ60_01180 PF00892 EamA-like transporter family HHJ60_01185 PF01016 Ribosomal L27 protein HHJ60_01190 PF00829 Ribosomal prokaryotic L21 protein HHJ60_01195 PF00348 Polyprenyl synthetase HHJ60_01200 PF02677 Epoxyqueuosine reductase QueH HHJ60_01205 PF00085 Thioredoxin HHJ60_01210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HHJ60_01210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HHJ60_01215 PF01053 Cys/Met metabolism PLP-dependent enzyme HHJ60_01235 PF00589 Phage integrase family HHJ60_01295 PF00436 Single-strand binding protein family HHJ60_01345 PF07411 Domain of unknown function (DUF1508) HHJ60_01350 PF05973 Phage derived protein Gp49-like (DUF891) HHJ60_01355 PF01381 Helix-turn-helix HHJ60_01370 PF00717 Peptidase S24-like HHJ60_01370 PF01726 LexA DNA binding domain HHJ60_01410 PF07102 Protein of unknown function (DUF1364) HHJ60_01435 PF07411 Domain of unknown function (DUF1508) HHJ60_01540 PF00436 Single-strand binding protein family HHJ60_01565 PF02498 BRO family, N-terminal domain HHJ60_01565 PF10548 P22AR C-terminal domain HHJ60_01575 PF00589 Phage integrase family HHJ60_01585 PF00749 tRNA synthetases class I (E and Q), catalytic domain HHJ60_01595 PF02091 Glycyl-tRNA synthetase alpha subunit HHJ60_01610 PF17761 DUF1016 N-terminal domain HHJ60_01610 PF06250 YhcG PDDEXK nuclease domain HHJ60_01615 PF04480 Protein of unknown function (DUF559) HHJ60_01625 PF02092 Glycyl-tRNA synthetase beta subunit HHJ60_01625 PF05746 DALR anticodon binding domain HHJ60_01630 PF02082 Transcriptional regulator HHJ60_01635 PF00175 Oxidoreductase NAD-binding domain HHJ60_01635 PF00042 Globin HHJ60_01635 PF00970 Oxidoreductase FAD-binding domain HHJ60_01640 PF12762 ISXO2-like transposase domain HHJ60_01645 PF17092 Penicillin-binding protein OB-like domain HHJ60_01645 PF00912 Transglycosylase HHJ60_01645 PF00905 Penicillin binding protein transpeptidase domain HHJ60_01650 PF11104 Type IV pilus assembly protein PilM; HHJ60_01670 PF03958 Bacterial type II/III secretion system short domain HHJ60_01670 PF00263 Bacterial type II and III secretion system protein HHJ60_01675 PF01202 Shikimate kinase HHJ60_01680 PF01761 3-dehydroquinate synthase HHJ60_01685 PF02086 D12 class N6 adenine-specific DNA methyltransferase HHJ60_01690 PF05258 Dna[CI] antecedent, DciA HHJ60_01695 PF10818 Protein of unknown function (DUF2547) HHJ60_01700 PF01043 SecA preprotein cross-linking domain HHJ60_01700 PF07516 SecA Wing and Scaffold domain HHJ60_01700 PF07517 SecA DEAD-like domain HHJ60_01700 PF02810 SEC-C motif HHJ60_01705 PF00293 NUDIX domain HHJ60_01710 PF02559 CarD-like/TRCF domain HHJ60_01710 PF00270 DEAD/DEAH box helicase HHJ60_01710 PF17757 UvrB interaction domain HHJ60_01710 PF00271 Helicase conserved C-terminal domain HHJ60_01710 PF03461 TRCF domain HHJ60_01720 PF13580 SIS domain HHJ60_01725 PF00497 Bacterial extracellular solute-binding proteins, family 3 HHJ60_01725 PF01464 Transglycosylase SLT domain HHJ60_01740 PF13356 Arm DNA-binding domain HHJ60_01740 PF00589 Phage integrase family HHJ60_01770 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HHJ60_01820 PF00166 Chaperonin 10 Kd subunit HHJ60_01825 PF00118 TCP-1/cpn60 chaperonin family HHJ60_01830 PF00291 Pyridoxal-phosphate dependent enzyme HHJ60_01840 PF04354 ZipA, C-terminal FtsZ-binding domain HHJ60_01845 PF01653 NAD-dependent DNA ligase adenylation domain HHJ60_01845 PF00533 BRCA1 C Terminus (BRCT) domain HHJ60_01845 PF03120 NAD-dependent DNA ligase OB-fold domain HHJ60_01845 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HHJ60_01845 PF12826 Helix-hairpin-helix motif HHJ60_01850 PF03477 ATP cone domain HHJ60_01850 PF13597 Anaerobic ribonucleoside-triphosphate reductase HHJ60_01860 PF01026 TatD related DNase HHJ60_01865 PF00490 Delta-aminolevulinic acid dehydratase HHJ60_01870 PF00902 Sec-independent protein translocase protein (TatC) HHJ60_01880 PF02416 mttA/Hcf106 family HHJ60_01885 PF03109 ABC1 family HHJ60_01890 PF02036 SCP-2 sterol transfer family HHJ60_01895 PF01209 ubiE/COQ5 methyltransferase family HHJ60_01900 PF00939 Sodium:sulfate symporter transmembrane region HHJ60_01905 PF03737 Aldolase/RraA HHJ60_01910 PF01040 UbiA prenyltransferase family HHJ60_01915 PF18389 TrmO C-terminal domain HHJ60_01915 PF01980 tRNA-methyltransferase O HHJ60_01920 PF00230 Major intrinsic protein HHJ60_01925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ60_01925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ60_01930 PF02899 Phage integrase, N-terminal SAM-like domain HHJ60_01930 PF00589 Phage integrase family HHJ60_01935 PF01812 5-formyltetrahydrofolate cyclo-ligase family HHJ60_01945 PF05164 Cell division protein ZapA HHJ60_01950 PF03695 Uncharacterised protein family (UPF0149) HHJ60_01955 PF00557 Metallopeptidase family M24 HHJ60_01955 PF05195 Aminopeptidase P, N-terminal domain HHJ60_01960 PF01494 FAD binding domain HHJ60_01965 PF01494 FAD binding domain HHJ60_01970 PF13407 Periplasmic binding protein domain HHJ60_01975 PF13407 Periplasmic binding protein domain HHJ60_01980 PF00005 ABC transporter HHJ60_01985 PF02653 Branched-chain amino acid transport system / permease component HHJ60_01990 PF00027 Cyclic nucleotide-binding domain HHJ60_01990 PF13545 Crp-like helix-turn-helix domain HHJ60_01995 PF06794 Uncharacterised protein family (UPF0270) HHJ60_02000 PF00440 Bacterial regulatory proteins, tetR family HHJ60_02005 PF00692 dUTPase HHJ60_02010 PF04127 DNA / pantothenate metabolism flavoprotein HHJ60_02010 PF02441 Flavoprotein HHJ60_02015 PF04002 RadC-like JAB domain HHJ60_02020 PF00830 Ribosomal L28 family HHJ60_02025 PF00471 Ribosomal protein L33 HHJ60_02030 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HHJ60_02030 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HHJ60_02030 PF06827 Zinc finger found in FPG and IleRS HHJ60_02035 PF00701 Dihydrodipicolinate synthetase family HHJ60_02040 PF01380 SIS domain HHJ60_02040 PF01418 Helix-turn-helix domain, rpiR family HHJ60_02045 PF04074 YhcH/YjgK/YiaL HHJ60_02050 PF00480 ROK family HHJ60_02055 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HHJ60_02060 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HHJ60_02060 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HHJ60_02065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HHJ60_02070 PF09190 DALR domain HHJ60_02070 PF01406 tRNA synthetases class I (C) catalytic domain HHJ60_02075 PF05860 haemagglutination activity domain HHJ60_02080 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HHJ60_02080 PF08479 POTRA domain, ShlB-type HHJ60_02085 PF07715 TonB-dependent Receptor Plug Domain HHJ60_02085 PF00593 TonB dependent receptor HHJ60_02090 PF06228 Haem utilisation ChuX/HutX HHJ60_02095 PF01243 Pyridoxamine 5'-phosphate oxidase HHJ60_02100 PF04093 rod shape-determining protein MreD HHJ60_02105 PF04085 rod shape-determining protein MreC HHJ60_02115 PF17755 UvrA DNA-binding domain HHJ60_02115 PF17760 UvrA interaction domain HHJ60_02120 PF00436 Single-strand binding protein family HHJ60_02145 PF02129 X-Pro dipeptidyl-peptidase (S15 family) HHJ60_02180 PF00248 Aldo/keto reductase family HHJ60_02185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_02185 PF03466 LysR substrate binding domain HHJ60_02190 PF03605 Anaerobic c4-dicarboxylate membrane transporter HHJ60_02200 PF00550 Phosphopantetheine attachment site HHJ60_02210 PF00698 Acyl transferase domain HHJ60_02215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HHJ60_02215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HHJ60_02220 PF02504 Fatty acid synthesis protein HHJ60_02225 PF01783 Ribosomal L32p protein family HHJ60_02230 PF02620 Large ribosomal RNA subunit accumulation protein YceD HHJ60_02240 PF08241 Methyltransferase domain HHJ60_02245 PF04301 Protein of unknown function (DUF452) HHJ60_02250 PF00155 Aminotransferase class I and II HHJ60_02255 PF00202 Aminotransferase class-III HHJ60_02270 PF02666 Phosphatidylserine decarboxylase HHJ60_02275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HHJ60_02275 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HHJ60_02280 PF12762 ISXO2-like transposase domain HHJ60_02285 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HHJ60_02285 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HHJ60_02290 PF00625 Guanylate kinase HHJ60_02295 PF01192 RNA polymerase Rpb6 HHJ60_02300 PF13291 ACT domain HHJ60_02300 PF04607 Region found in RelA / SpoT proteins HHJ60_02300 PF02824 TGS domain HHJ60_02305 PF00271 Helicase conserved C-terminal domain HHJ60_02305 PF17191 RecG wedge domain HHJ60_02305 PF00270 DEAD/DEAH box helicase HHJ60_02310 PF01177 Asp/Glu/Hydantoin racemase HHJ60_02340 PF08239 Bacterial SH3 domain HHJ60_02345 PF01966 HD domain HHJ60_02345 PF12627 Probable RNA and SrmB- binding site of polymerase A HHJ60_02345 PF01743 Poly A polymerase head domain HHJ60_02350 PF08942 Domain of unknown function (DUF1919) HHJ60_02355 PF02682 Carboxyltransferase domain, subdomain C and D HHJ60_02360 PF02626 Carboxyltransferase domain, subdomain A and B HHJ60_02365 PF03746 LamB/YcsF family HHJ60_02370 PF01566 Natural resistance-associated macrophage protein HHJ60_02380 PF13419 Haloacid dehalogenase-like hydrolase HHJ60_02385 PF02219 Methylenetetrahydrofolate reductase HHJ60_02395 PF03372 Endonuclease/Exonuclease/phosphatase family HHJ60_02400 PF00072 Response regulator receiver domain HHJ60_02400 PF00196 Bacterial regulatory proteins, luxR family HHJ60_02405 PF02525 Flavodoxin-like fold HHJ60_02410 PF08496 Peptidase family S49 N-terminal HHJ60_02410 PF01343 Peptidase family S49 HHJ60_02420 PF00149 Calcineurin-like phosphoesterase HHJ60_02425 PF03477 ATP cone domain HHJ60_02425 PF02867 Ribonucleotide reductase, barrel domain HHJ60_02425 PF00317 Ribonucleotide reductase, all-alpha domain HHJ60_02430 PF06965 Na+/H+ antiporter 1 HHJ60_02435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HHJ60_02440 PF00578 AhpC/TSA family HHJ60_02445 PF06733 DEAD_2 HHJ60_02445 PF13307 Helicase C-terminal domain HHJ60_02450 PF00814 Glycoprotease family HHJ60_02455 PF13193 AMP-binding enzyme C-terminal domain HHJ60_02455 PF00501 AMP-binding enzyme HHJ60_02460 PF01612 3'-5' exonuclease HHJ60_02460 PF00570 HRDC domain HHJ60_02475 PF00005 ABC transporter HHJ60_02475 PF00664 ABC transporter transmembrane region HHJ60_02480 PF00664 ABC transporter transmembrane region HHJ60_02480 PF00005 ABC transporter HHJ60_02485 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ60_02495 PF02447 GntP family permease HHJ60_02500 PF01202 Shikimate kinase HHJ60_02510 PF00209 Sodium:neurotransmitter symporter family HHJ60_02515 PF00730 HhH-GPD superfamily base excision DNA repair protein HHJ60_02515 PF00633 Helix-hairpin-helix motif HHJ60_02515 PF10576 Iron-sulfur binding domain of endonuclease III HHJ60_02520 PF02508 Rnf-Nqr subunit, membrane protein HHJ60_02525 PF04205 FMN-binding domain HHJ60_02530 PF03116 NQR2, RnfD, RnfE family HHJ60_02535 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HHJ60_02535 PF13237 4Fe-4S dicluster domain HHJ60_02535 PF13375 RnfC Barrel sandwich hybrid domain HHJ60_02540 PF04060 Putative Fe-S cluster HHJ60_02545 PF02508 Rnf-Nqr subunit, membrane protein HHJ60_02550 PF01370 NAD dependent epimerase/dehydratase family HHJ60_02550 PF08338 Domain of unknown function (DUF1731) HHJ60_02555 PF02863 Arginine repressor, C-terminal domain HHJ60_02555 PF01316 Arginine repressor, DNA binding domain HHJ60_02560 PF00056 lactate/malate dehydrogenase, NAD binding domain HHJ60_02560 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HHJ60_02575 PF01380 SIS domain HHJ60_02575 PF00571 CBS domain HHJ60_02585 PF05175 Methyltransferase small domain HHJ60_02590 PF01713 Smr domain HHJ60_02595 PF01416 tRNA pseudouridine synthase HHJ60_02600 PF17848 Acetyl-coA carboxylase zinc finger domain HHJ60_02600 PF01039 Carboxyl transferase domain HHJ60_02605 PF08245 Mur ligase middle domain HHJ60_02610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HHJ60_02610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HHJ60_02615 PF03701 Uncharacterised protein family (UPF0181) HHJ60_02620 PF00313 'Cold-shock' DNA-binding domain HHJ60_02635 PF00356 Bacterial regulatory proteins, lacI family HHJ60_02635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HHJ60_02640 PF00586 AIR synthase related protein, N-terminal domain HHJ60_02640 PF02769 AIR synthase related protein, C-terminal domain HHJ60_02645 PF06303 MatP N-terminal domain HHJ60_02645 PF17414 MatP C-terminal ribbon-helix-helix domain HHJ60_02650 PF05362 Lon protease (S16) C-terminal proteolytic domain HHJ60_02650 PF13654 AAA domain HHJ60_02655 PF07977 FabA-like domain HHJ60_02660 PF04073 Aminoacyl-tRNA editing domain HHJ60_02670 PF00860 Permease family HHJ60_02675 PF02635 DsrE/DsrF-like family HHJ60_02680 PF12705 PD-(D/E)XK nuclease superfamily HHJ60_02680 PF00580 UvrD/REP helicase N-terminal domain HHJ60_02680 PF13361 UvrD-like helicase C-terminal domain HHJ60_02685 PF13538 UvrD-like helicase C-terminal domain HHJ60_02690 PF03895 YadA-like membrane anchor domain HHJ60_02690 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin HHJ60_02690 PF05662 Coiled stalk of trimeric autotransporter adhesin HHJ60_02690 PF13018 Extended Signal Peptide of Type V secretion system HHJ60_02695 PF00152 tRNA synthetases class II (D, K and N) HHJ60_02695 PF01336 OB-fold nucleic acid binding domain HHJ60_02700 PF01047 MarR family HHJ60_02700 PF00480 ROK family HHJ60_02710 PF01842 ACT domain HHJ60_02710 PF00551 Formyl transferase HHJ60_02715 PF00300 Histidine phosphatase superfamily (branch 1) HHJ60_02720 PF13396 Phospholipase_D-nuclease N-terminal HHJ60_02720 PF13091 PLD-like domain HHJ60_02725 PF00849 RNA pseudouridylate synthase HHJ60_02730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HHJ60_02730 PF01409 tRNA synthetases class II core domain (F) HHJ60_02735 PF03483 B3/4 domain HHJ60_02735 PF03484 tRNA synthetase B5 domain HHJ60_02735 PF03147 Ferredoxin-fold anticodon binding domain HHJ60_02735 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HHJ60_02735 PF01588 Putative tRNA binding domain HHJ60_02740 PF00216 Bacterial DNA-binding protein HHJ60_02745 PF00877 NlpC/P60 family HHJ60_02750 PF03797 Autotransporter beta-domain HHJ60_02755 PF01171 PP-loop family HHJ60_02760 PF17192 MukF middle domain HHJ60_02760 PF03882 MukF winged-helix domain HHJ60_02760 PF17193 MukF C-terminal domain HHJ60_02765 PF04288 MukE-like family HHJ60_02770 PF16330 MukB hinge domain HHJ60_02770 PF04310 MukB N-terminal HHJ60_02780 PF08411 Exonuclease C-terminal HHJ60_02780 PF00929 Exonuclease HHJ60_02795 PF12762 ISXO2-like transposase domain HHJ60_02800 PF04386 Stringent starvation protein B HHJ60_02805 PF13417 Glutathione S-transferase, N-terminal domain HHJ60_02805 PF00043 Glutathione S-transferase, C-terminal domain HHJ60_02810 PF00380 Ribosomal protein S9/S16 HHJ60_02815 PF00572 Ribosomal protein L13 HHJ60_02820 PF00849 RNA pseudouridylate synthase HHJ60_02825 PF04287 tRNA pseudouridine synthase C HHJ60_02830 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HHJ60_02840 PF14489 QueF-like protein HHJ60_02840 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HHJ60_02845 PF03641 Possible lysine decarboxylase HHJ60_02845 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HHJ60_02845 PF11892 Domain of unknown function (DUF3412) HHJ60_02850 PF08681 Protein of unknown function (DUF1778) HHJ60_02860 PF00535 Glycosyl transferase family 2 HHJ60_02865 PF01061 ABC-2 type transporter HHJ60_02870 PF00005 ABC transporter HHJ60_02875 PF04315 Elongation factor P hydroxylase HHJ60_02880 PF01435 Peptidase family M48 HHJ60_02885 PF00817 impB/mucB/samB family HHJ60_02885 PF11798 IMS family HHH motif HHJ60_02890 PF00343 Carbohydrate phosphorylase HHJ60_02895 PF08323 Starch synthase catalytic domain HHJ60_02895 PF00534 Glycosyl transferases group 1 HHJ60_02900 PF00483 Nucleotidyl transferase HHJ60_02905 PF00128 Alpha amylase, catalytic domain HHJ60_02905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HHJ60_02905 PF18390 Glycogen debranching enzyme C-terminal domain HHJ60_02910 PF00128 Alpha amylase, catalytic domain HHJ60_02910 PF02806 Alpha amylase, C-terminal all-beta domain HHJ60_02910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HHJ60_02915 PF02446 4-alpha-glucanotransferase HHJ60_02920 PF05656 Protein of unknown function (DUF805) HHJ60_02930 PF00749 tRNA synthetases class I (E and Q), catalytic domain HHJ60_02930 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HHJ60_02935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HHJ60_02940 PF02687 FtsX-like permease family HHJ60_02940 PF00005 ABC transporter HHJ60_02940 PF12704 MacB-like periplasmic core domain HHJ60_02945 PF02321 Outer membrane efflux protein HHJ60_02955 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ60_02955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HHJ60_02960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HHJ60_02960 PF02817 e3 binding domain HHJ60_02960 PF00364 Biotin-requiring enzyme HHJ60_02965 PF00456 Transketolase, thiamine diphosphate binding domain HHJ60_02965 PF17831 Pyruvate dehydrogenase E1 component middle domain HHJ60_02970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HHJ60_02975 PF05524 PEP-utilising enzyme, N-terminal HHJ60_02975 PF00391 PEP-utilising enzyme, mobile domain HHJ60_02975 PF02896 PEP-utilising enzyme, TIM barrel domain HHJ60_02980 PF00381 PTS HPr component phosphorylation site HHJ60_02985 PF03193 RsgA GTPase HHJ60_02990 PF00929 Exonuclease HHJ60_03005 PF03462 PCRF domain HHJ60_03005 PF00472 RF-1 domain HHJ60_03010 PF02403 Seryl-tRNA synthetase N-terminal domain HHJ60_03010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HHJ60_03015 PF00004 ATPase family associated with various cellular activities (AAA) HHJ60_03015 PF12002 MgsA AAA+ ATPase C terminal HHJ60_03015 PF16193 AAA C-terminal domain HHJ60_03030 PF03548 Outer membrane lipoprotein carrier protein LolA HHJ60_03035 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HHJ60_03035 PF17854 FtsK alpha domain HHJ60_03035 PF09397 Ftsk gamma domain HHJ60_03035 PF01580 FtsK/SpoIIIE family HHJ60_03040 PF01037 Lrp/AsnC ligand binding domain HHJ60_03045 PF01966 HD domain HHJ60_03045 PF13286 Phosphohydrolase-associated domain HHJ60_03050 PF04172 LrgB-like family HHJ60_03055 PF03788 LrgA family HHJ60_03060 PF00565 Staphylococcal nuclease homologue HHJ60_03065 PF00266 Aminotransferase class-V HHJ60_03070 PF02657 Fe-S metabolism associated domain HHJ60_03075 PF16036 Chalcone isomerase-like HHJ60_03080 PF05728 Uncharacterised protein family (UPF0227) HHJ60_03085 PF08443 RimK-like ATP-grasp domain HHJ60_03085 PF18030 RimK PreATP-grasp domain HHJ60_03090 PF00462 Glutaredoxin HHJ60_03095 PF00583 Acetyltransferase (GNAT) family HHJ60_03095 PF00696 Amino acid kinase family HHJ60_03100 PF00171 Aldehyde dehydrogenase family HHJ60_03105 PF01258 Prokaryotic dksA/traR C4-type zinc finger HHJ60_03110 PF12626 Polymerase A arginine-rich C-terminus HHJ60_03110 PF01743 Poly A polymerase head domain HHJ60_03110 PF12627 Probable RNA and SrmB- binding site of polymerase A HHJ60_03115 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HHJ60_03120 PF02568 Thiamine biosynthesis protein (ThiI) HHJ60_03120 PF02926 THUMP domain HHJ60_03130 PF00348 Polyprenyl synthetase HHJ60_03135 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HHJ60_03135 PF02779 Transketolase, pyrimidine binding domain HHJ60_03135 PF02780 Transketolase, C-terminal domain HHJ60_03140 PF01985 CRS1 / YhbY (CRM) domain HHJ60_03145 PF01272 Transcription elongation factor, GreA/GreB, C-term HHJ60_03145 PF03449 Transcription elongation factor, N-terminal HHJ60_03150 PF03476 MOSC N-terminal beta barrel domain HHJ60_03150 PF03473 MOSC domain HHJ60_03150 PF00111 2Fe-2S iron-sulfur cluster binding domain HHJ60_03160 PF02153 Prephenate dehydrogenase HHJ60_03160 PF01817 Chorismate mutase type II HHJ60_03165 PF00793 DAHP synthetase I family HHJ60_03170 PF02811 PHP domain HHJ60_03175 PF01180 Dihydroorotate dehydrogenase HHJ60_03180 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HHJ60_03180 PF11940 Domain of unknown function (DUF3458) Ig-like fold HHJ60_03180 PF01433 Peptidase family M1 domain HHJ60_03185 PF00731 AIR carboxylase HHJ60_03230 PF02441 Flavoprotein HHJ60_03235 PF00156 Phosphoribosyl transferase domain HHJ60_03240 PF02674 Colicin V production protein HHJ60_03245 PF04217 Protein of unknown function, DUF412 HHJ60_03250 PF00871 Acetokinase family HHJ60_03255 PF01515 Phosphate acetyl/butaryl transferase HHJ60_03255 PF07085 DRTGG domain HHJ60_03265 PF13954 PapC N-terminal domain HHJ60_03265 PF00577 Outer membrane usher protein HHJ60_03265 PF13953 PapC C-terminal domain HHJ60_03270 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HHJ60_03270 PF02753 Pili assembly chaperone PapD, C-terminal domain HHJ60_03275 PF16970 Type-1 fimbrial protein, A HHJ60_03280 PF00924 Mechanosensitive ion channel HHJ60_03280 PF05552 Conserved TM helix HHJ60_03285 PF03739 Lipopolysaccharide export system permease LptF/LptG HHJ60_03290 PF03739 Lipopolysaccharide export system permease LptF/LptG HHJ60_03295 PF00883 Cytosol aminopeptidase family, catalytic domain HHJ60_03295 PF02789 Cytosol aminopeptidase family, N-terminal domain HHJ60_03310 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HHJ60_03310 PF01488 Shikimate / quinate 5-dehydrogenase HHJ60_03310 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HHJ60_03315 PF16123 Hydroxyacylglutathione hydrolase C-terminus HHJ60_03315 PF00753 Metallo-beta-lactamase superfamily HHJ60_03320 PF08241 Methyltransferase domain HHJ60_03325 PF18381 YcaO cyclodehydratase C-terminal domain HHJ60_03325 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HHJ60_03330 PF06295 Protein of unknown function (DUF1043) HHJ60_03335 PF00268 Ribonucleotide reductase, small chain HHJ60_03350 PF00111 2Fe-2S iron-sulfur cluster binding domain HHJ60_03355 PF01113 Dihydrodipicolinate reductase, N-terminus HHJ60_03355 PF05173 Dihydrodipicolinate reductase, C-terminus HHJ60_03360 PF01810 LysE type translocator HHJ60_03365 PF04608 Phosphatidylglycerophosphatase A HHJ60_03370 PF02769 AIR synthase related protein, C-terminal domain HHJ60_03370 PF00586 AIR synthase related protein, N-terminal domain HHJ60_03375 PF01029 NusB family HHJ60_03380 PF00885 6,7-dimethyl-8-ribityllumazine synthase HHJ60_03385 PF03222 Tryptophan/tyrosine permease family HHJ60_03395 PF00300 Histidine phosphatase superfamily (branch 1) HHJ60_03400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HHJ60_03400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HHJ60_03400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HHJ60_03400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HHJ60_03405 PF00809 Pterin binding enzyme HHJ60_03415 PF13180 PDZ domain HHJ60_03420 PF01872 RibD C-terminal domain HHJ60_03420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HHJ60_03425 PF03477 ATP cone domain HHJ60_03430 PF09313 Domain of unknown function (DUF1971) HHJ60_03430 PF03848 Tellurite resistance protein TehB HHJ60_03460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HHJ60_03460 PF02824 TGS domain HHJ60_03460 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HHJ60_03460 PF03129 Anticodon binding domain HHJ60_03465 PF13417 Glutathione S-transferase, N-terminal domain HHJ60_03465 PF04399 Glutaredoxin 2, C terminal domain HHJ60_03505 PF00589 Phage integrase family HHJ60_03505 PF13356 Arm DNA-binding domain HHJ60_03515 PF03881 Fructosamine kinase HHJ60_03525 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HHJ60_03530 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HHJ60_03535 PF04851 Type III restriction enzyme, res subunit HHJ60_03535 PF17757 UvrB interaction domain HHJ60_03535 PF00271 Helicase conserved C-terminal domain HHJ60_03535 PF12344 Ultra-violet resistance protein B HHJ60_03535 PF02151 UvrB/uvrC motif HHJ60_03545 PF01699 Sodium/calcium exchanger protein HHJ60_03550 PF03824 High-affinity nickel-transport protein HHJ60_03555 PF06226 Protein of unknown function (DUF1007) HHJ60_03560 PF12848 ABC transporter HHJ60_03560 PF00005 ABC transporter HHJ60_03565 PF01546 Peptidase family M20/M25/M40 HHJ60_03565 PF07687 Peptidase dimerisation domain HHJ60_03575 PF00356 Bacterial regulatory proteins, lacI family HHJ60_03580 PF00294 pfkB family carbohydrate kinase HHJ60_03585 PF07662 Na+ dependent nucleoside transporter C-terminus HHJ60_03585 PF01773 Na+ dependent nucleoside transporter N-terminus HHJ60_03585 PF07670 Nucleoside recognition HHJ60_03590 PF01156 Inosine-uridine preferring nucleoside hydrolase HHJ60_03595 PF00595 PDZ domain HHJ60_03600 PF01027 Inhibitor of apoptosis-promoting Bax1 HHJ60_03605 PF04358 DsrC like protein HHJ60_03610 PF01297 Zinc-uptake complex component A periplasmic HHJ60_03615 PF00005 ABC transporter HHJ60_03620 PF00950 ABC 3 transport family HHJ60_03625 PF00950 ABC 3 transport family HHJ60_03630 PF00561 alpha/beta hydrolase fold HHJ60_03635 PF02698 DUF218 domain HHJ60_03640 PF00356 Bacterial regulatory proteins, lacI family HHJ60_03640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HHJ60_03645 PF00793 DAHP synthetase I family HHJ60_03650 PF12704 MacB-like periplasmic core domain HHJ60_03650 PF02687 FtsX-like permease family HHJ60_03655 PF00005 ABC transporter HHJ60_03660 PF12704 MacB-like periplasmic core domain HHJ60_03660 PF02687 FtsX-like permease family HHJ60_03665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HHJ60_03665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HHJ60_03670 PF00793 DAHP synthetase I family HHJ60_03675 PF13369 Transglutaminase-like superfamily HHJ60_03680 PF17827 PrmC N-terminal domain HHJ60_03680 PF13847 Methyltransferase domain HHJ60_03685 PF06480 FtsH Extracellular HHJ60_03685 PF17862 AAA+ lid domain HHJ60_03685 PF00004 ATPase family associated with various cellular activities (AAA) HHJ60_03685 PF01434 Peptidase family M41 HHJ60_03690 PF01728 FtsJ-like methyltransferase HHJ60_03695 PF12805 FUSC-like inner membrane protein yccS HHJ60_03700 PF02142 MGS-like domain HHJ60_03705 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HHJ60_03710 PF02391 MoaE protein HHJ60_03715 PF02597 ThiS family HHJ60_03720 PF01967 MoaC family HHJ60_03725 PF06463 Molybdenum Cofactor Synthesis C HHJ60_03725 PF04055 Radical SAM superfamily HHJ60_03740 PF00577 Outer membrane usher protein HHJ60_03740 PF13954 PapC N-terminal domain HHJ60_03740 PF13953 PapC C-terminal domain HHJ60_03745 PF02753 Pili assembly chaperone PapD, C-terminal domain HHJ60_03745 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HHJ60_03765 PF03062 MBOAT, membrane-bound O-acyltransferase family HHJ60_03770 PF01227 GTP cyclohydrolase I HHJ60_03775 PF03453 MoeA N-terminal region (domain I and II) HHJ60_03775 PF03454 MoeA C-terminal region (domain IV) HHJ60_03775 PF00994 Probable molybdopterin binding domain HHJ60_03780 PF00899 ThiF family HHJ60_03785 PF03956 Lysine exporter LysO HHJ60_03790 PF00210 Ferritin-like domain HHJ60_03795 PF00210 Ferritin-like domain HHJ60_03805 PF00027 Cyclic nucleotide-binding domain HHJ60_03805 PF13545 Crp-like helix-turn-helix domain HHJ60_03810 PF00582 Universal stress protein family HHJ60_03820 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HHJ60_03820 PF14602 Hexapeptide repeat of succinyl-transferase HHJ60_03820 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ60_03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_03825 PF03466 LysR substrate binding domain HHJ60_03830 PF00849 RNA pseudouridylate synthase HHJ60_03830 PF01479 S4 domain HHJ60_03835 PF01300 Telomere recombination HHJ60_03840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HHJ60_03845 PF04348 LppC putative lipoprotein HHJ60_03850 PF02021 Uncharacterised protein family UPF0102 HHJ60_03855 PF13580 SIS domain HHJ60_03860 PF04972 BON domain HHJ60_03865 PF00580 UvrD/REP helicase N-terminal domain HHJ60_03865 PF13361 UvrD-like helicase C-terminal domain HHJ60_03880 PF01728 FtsJ-like methyltransferase HHJ60_03880 PF18125 RlmM ferredoxin-like domain HHJ60_03885 PF03466 LysR substrate binding domain HHJ60_03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_03890 PF01063 Amino-transferase class IV HHJ60_03895 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin HHJ60_03895 PF05662 Coiled stalk of trimeric autotransporter adhesin HHJ60_03895 PF13018 Extended Signal Peptide of Type V secretion system HHJ60_03895 PF03895 YadA-like membrane anchor domain HHJ60_03905 PF03840 Preprotein translocase SecG subunit HHJ60_03910 PF01131 DNA topoisomerase HHJ60_03910 PF01751 Toprim domain HHJ60_03915 PF02575 YbaB/EbfC DNA-binding family HHJ60_03920 PF02132 RecR protein HHJ60_03920 PF13662 Toprim domain HHJ60_03925 PF01053 Cys/Met metabolism PLP-dependent enzyme HHJ60_03930 PF10417 C-terminal domain of 1-Cys peroxiredoxin HHJ60_03930 PF00578 AhpC/TSA family HHJ60_03935 PF05166 YcgL domain HHJ60_03940 PF01467 Cytidylyltransferase-like HHJ60_03940 PF00294 pfkB family carbohydrate kinase HHJ60_03945 PF03279 Bacterial lipid A biosynthesis acyltransferase HHJ60_03950 PF00753 Metallo-beta-lactamase superfamily HHJ60_03955 PF05951 Bacterial protein of unknown function (DUF882) HHJ60_03960 PF03734 L,D-transpeptidase catalytic domain HHJ60_03965 PF11818 C-terminal domain of tail specific protease (DUF3340) HHJ60_03965 PF03572 Peptidase family S41 HHJ60_03965 PF00595 PDZ domain HHJ60_03965 PF17804 Tail specific protease N-terminal domain HHJ60_03970 PF17516 ProQ C-terminal domain HHJ60_03970 PF04352 ProQ/FINO family HHJ60_03975 PF04403 Paraquat-inducible protein A HHJ60_03980 PF02470 MlaD protein HHJ60_03985 PF01751 Toprim domain HHJ60_03985 PF00986 DNA gyrase B subunit, carboxyl terminus HHJ60_03985 PF00204 DNA gyrase B HHJ60_03985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ60_03990 PF07732 Multicopper oxidase HHJ60_03995 PF00521 DNA gyrase/topoisomerase IV, subunit A HHJ60_03995 PF03989 DNA gyrase C-terminal domain, beta-propeller HHJ60_04000 PF11230 Protein of unknown function (DUF3029) HHJ60_04005 PF04055 Radical SAM superfamily HHJ60_04010 PF03783 Curli production assembly/transport component CsgG HHJ60_04020 PF05643 Putative bacterial lipoprotein (DUF799) HHJ60_04025 PF08272 Topoisomerase I zinc-ribbon-like HHJ60_04025 PF01396 Topoisomerase DNA binding C4 zinc finger HHJ60_04025 PF01751 Toprim domain HHJ60_04025 PF01131 DNA topoisomerase HHJ60_04030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_04030 PF03466 LysR substrate binding domain HHJ60_04035 PF01343 Peptidase family S49 HHJ60_04040 PF00881 Nitroreductase family HHJ60_04045 PF05726 Pirin C-terminal cupin domain HHJ60_04045 PF02678 Pirin HHJ60_04055 PF03466 LysR substrate binding domain HHJ60_04055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_04060 PF00056 lactate/malate dehydrogenase, NAD binding domain HHJ60_04060 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HHJ60_04065 PF10369 Small subunit of acetolactate synthase HHJ60_04070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HHJ60_04070 PF00205 Thiamine pyrophosphate enzyme, central domain HHJ60_04070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HHJ60_04075 PF03553 Na+/H+ antiporter family HHJ60_04080 PF00816 H-NS histone family HHJ60_04085 PF00773 RNB domain HHJ60_04085 PF08206 Ribonuclease B OB domain HHJ60_04085 PF00575 S1 RNA binding domain HHJ60_04095 PF01784 NIF3 (NGG1p interacting factor 3) HHJ60_04100 PF00356 Bacterial regulatory proteins, lacI family HHJ60_04105 PF00311 Phosphoenolpyruvate carboxylase HHJ60_04110 PF04055 Radical SAM superfamily HHJ60_04110 PF00919 Uncharacterized protein family UPF0004 HHJ60_04110 PF01938 TRAM domain HHJ60_04115 PF01494 FAD binding domain HHJ60_04140 PF00149 Calcineurin-like phosphoesterase HHJ60_04145 PF00293 NUDIX domain HHJ60_04150 PF06146 Phosphate-starvation-inducible E HHJ60_04155 PF02557 D-alanyl-D-alanine carboxypeptidase HHJ60_04160 PF01546 Peptidase family M20/M25/M40 HHJ60_04160 PF07687 Peptidase dimerisation domain HHJ60_04165 PF03960 ArsC family HHJ60_04170 PF02086 D12 class N6 adenine-specific DNA methyltransferase HHJ60_04175 PF05315 ICEA Protein HHJ60_04180 PF01555 DNA methylase HHJ60_04185 PF14821 Threonine synthase N terminus HHJ60_04185 PF00291 Pyridoxal-phosphate dependent enzyme HHJ60_04190 PF08544 GHMP kinases C terminal HHJ60_04190 PF00288 GHMP kinases N terminal domain HHJ60_04195 PF00696 Amino acid kinase family HHJ60_04195 PF01842 ACT domain HHJ60_04195 PF13840 ACT domain HHJ60_04195 PF00742 Homoserine dehydrogenase HHJ60_04195 PF03447 Homoserine dehydrogenase, NAD binding domain HHJ60_04205 PF01168 Alanine racemase, N-terminal domain HHJ60_04210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HHJ60_04215 PF00929 Exonuclease HHJ60_04220 PF03553 Na+/H+ antiporter family HHJ60_04220 PF13726 Na+-H+ antiporter family HHJ60_04225 PF00171 Aldehyde dehydrogenase family HHJ60_04225 PF01619 Proline dehydrogenase HHJ60_04225 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HHJ60_04225 PF14850 DNA-binding domain of Proline dehydrogenase HHJ60_04230 PF00474 Sodium:solute symporter family HHJ60_04235 PF02547 Queuosine biosynthesis protein HHJ60_04240 PF01702 Queuine tRNA-ribosyltransferase HHJ60_04245 PF01814 Hemerythrin HHE cation binding domain HHJ60_04250 PF02699 Preprotein translocase subunit HHJ60_04255 PF13721 SecD export protein N-terminal TM region HHJ60_04255 PF02355 Protein export membrane protein HHJ60_04255 PF07549 SecD/SecF GG Motif HHJ60_04260 PF02355 Protein export membrane protein HHJ60_04260 PF07549 SecD/SecF GG Motif HHJ60_04265 PF14718 Soluble lytic murein transglycosylase L domain HHJ60_04265 PF01464 Transglycosylase SLT domain HHJ60_04270 PF01371 Trp repressor protein HHJ60_04275 PF00912 Transglycosylase HHJ60_04280 PF00106 short chain dehydrogenase HHJ60_04285 PF12832 MFS_1 like family HHJ60_04310 PF13018 Extended Signal Peptide of Type V secretion system HHJ60_04310 PF13332 Hemagglutinin repeat HHJ60_04310 PF05860 haemagglutination activity domain HHJ60_04310 PF04829 Pre-toxin domain with VENN motif HHJ60_04335 PF01555 DNA methylase HHJ60_04345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_04345 PF03466 LysR substrate binding domain HHJ60_04350 PF00512 His Kinase A (phospho-acceptor) domain HHJ60_04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ60_04350 PF08521 Two-component sensor kinase N-terminal HHJ60_04355 PF00486 Transcriptional regulatory protein, C terminal HHJ60_04355 PF00072 Response regulator receiver domain HHJ60_04360 PF03070 TENA/THI-4/PQQC family HHJ60_04370 PF01757 Acyltransferase family HHJ60_04380 PF02233 NAD(P) transhydrogenase beta subunit HHJ60_04385 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HHJ60_04385 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HHJ60_04385 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HHJ60_04390 PF17746 SfsA N-terminal OB domain HHJ60_04390 PF03749 Sugar fermentation stimulation protein RE domain HHJ60_04400 PF16347 Domain of unknown function (DUF4976) HHJ60_04400 PF00884 Sulfatase HHJ60_04410 PF08666 SAF domain HHJ60_04410 PF03102 NeuB family HHJ60_04415 PF02348 Cytidylyltransferase HHJ60_04415 PF13472 GDSL-like Lipase/Acylhydrolase family HHJ60_04420 PF02350 UDP-N-acetylglucosamine 2-epimerase HHJ60_04425 PF01479 S4 domain HHJ60_04425 PF00579 tRNA synthetases class I (W and Y) HHJ60_04430 PF00294 pfkB family carbohydrate kinase HHJ60_04435 PF00251 Glycosyl hydrolases family 32 N-terminal domain HHJ60_04435 PF08244 Glycosyl hydrolases family 32 C terminal HHJ60_04450 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HHJ60_04455 PF01476 LysM domain HHJ60_04455 PF01520 N-acetylmuramoyl-L-alanine amidase HHJ60_04460 PF01119 DNA mismatch repair protein, C-terminal domain HHJ60_04460 PF08676 MutL C terminal dimerisation domain HHJ60_04470 PF17209 Hfq protein HHJ60_04475 PF01926 50S ribosome-binding GTPase HHJ60_04475 PF13167 GTP-binding GTPase N-terminal HHJ60_04475 PF16360 GTP-binding GTPase Middle Region HHJ60_04485 PF04269 Protein of unknown function, DUF440 HHJ60_04500 PF01926 50S ribosome-binding GTPase HHJ60_04500 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HHJ60_04510 PF03981 Ubiquinol-cytochrome C chaperone HHJ60_04510 PF13099 Domain of unknown function (DUF3944) HHJ60_04545 PF13280 WYL domain HHJ60_04545 PF08279 HTH domain HHJ60_04555 PF07445 Primosomal replication protein priC HHJ60_04560 PF02678 Pirin HHJ60_04560 PF17954 Quercetinase C-terminal cupin domain HHJ60_04565 PF13406 Transglycosylase SLT domain HHJ60_04570 PF00535 Glycosyl transferase family 2 HHJ60_04575 PF00535 Glycosyl transferase family 2 HHJ60_04585 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HHJ60_04595 PF04230 Polysaccharide pyruvyl transferase HHJ60_04600 PF02698 DUF218 domain HHJ60_04605 PF00109 Beta-ketoacyl synthase, N-terminal domain HHJ60_04605 PF02801 Beta-ketoacyl synthase, C-terminal domain HHJ60_04610 PF01266 FAD dependent oxidoreductase HHJ60_04610 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HHJ60_04615 PF01588 Putative tRNA binding domain HHJ60_04615 PF09334 tRNA synthetases class I (M) HHJ60_04620 PF10609 NUBPL iron-transfer P-loop NTPase HHJ60_04625 PF03239 Iron permease FTR1 family HHJ60_04630 PF10634 Fe2+ transport protein HHJ60_04640 PF02687 FtsX-like permease family HHJ60_04640 PF00005 ABC transporter HHJ60_04640 PF12704 MacB-like periplasmic core domain HHJ60_04650 PF00005 ABC transporter HHJ60_04655 PF01263 Aldose 1-epimerase HHJ60_04665 PF00152 tRNA synthetases class II (D, K and N) HHJ60_04665 PF01336 OB-fold nucleic acid binding domain HHJ60_04670 PF02661 Fic/DOC family HHJ60_04670 PF12728 Helix-turn-helix domain HHJ60_04680 PF10411 Disulfide bond isomerase protein N-terminus HHJ60_04680 PF13098 Thioredoxin-like domain HHJ60_04685 PF02272 DHHA1 domain HHJ60_04685 PF01368 DHH family HHJ60_04685 PF17768 RecJ OB domain HHJ60_04690 PF01048 Phosphorylase superfamily HHJ60_04695 PF01389 OmpA-like transmembrane domain HHJ60_04695 PF00691 OmpA family HHJ60_04700 PF03831 PhnA domain HHJ60_04700 PF08274 PhnA Zinc-Ribbon HHJ60_04705 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HHJ60_04710 PF00005 ABC transporter HHJ60_04720 PF01032 FecCD transport family HHJ60_04730 PF10670 Domain of unknown function (DUF4198) HHJ60_04735 PF07715 TonB-dependent Receptor Plug Domain HHJ60_04735 PF00593 TonB dependent receptor HHJ60_04740 PF00593 TonB dependent receptor HHJ60_04740 PF07715 TonB-dependent Receptor Plug Domain HHJ60_04745 PF03313 Serine dehydratase alpha chain HHJ60_04755 PF13309 HTH domain HHJ60_04755 PF08348 YheO-like PAS domain HHJ60_04765 PF00224 Pyruvate kinase, barrel domain HHJ60_04765 PF02887 Pyruvate kinase, alpha/beta domain HHJ60_04770 PF00881 Nitroreductase family HHJ60_04775 PF08543 Phosphomethylpyrimidine kinase HHJ60_04780 PF01171 PP-loop family HHJ60_04780 PF11734 TilS substrate C-terminal domain HHJ60_04780 PF09179 TilS substrate binding domain HHJ60_04785 PF02629 CoA binding domain HHJ60_04785 PF00549 CoA-ligase HHJ60_04790 PF08442 ATP-grasp domain HHJ60_04790 PF00549 CoA-ligase HHJ60_04795 PF00364 Biotin-requiring enzyme HHJ60_04795 PF02817 e3 binding domain HHJ60_04795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HHJ60_04800 PF16078 2-oxoglutarate dehydrogenase N-terminus HHJ60_04800 PF16870 2-oxoglutarate dehydrogenase C-terminal HHJ60_04800 PF02779 Transketolase, pyrimidine binding domain HHJ60_04800 PF00676 Dehydrogenase E1 component HHJ60_04805 PF00285 Citrate synthase, C-terminal domain HHJ60_04815 PF02525 Flavodoxin-like fold HHJ60_04825 PF01145 SPFH domain / Band 7 family HHJ60_04825 PF16200 C-terminal region of band_7 HHJ60_04850 PF01047 MarR family HHJ60_04850 PF00480 ROK family HHJ60_04855 PF01025 GrpE HHJ60_04860 PF01513 ATP-NAD kinase HHJ60_04865 PF02463 RecF/RecN/SMC N terminal domain HHJ60_04870 PF01250 Ribosomal protein S6 HHJ60_04875 PF00436 Single-strand binding protein family HHJ60_04880 PF01084 Ribosomal protein S18 HHJ60_04885 PF01281 Ribosomal protein L9, N-terminal domain HHJ60_04885 PF03948 Ribosomal protein L9, C-terminal domain HHJ60_04890 PF00202 Aminotransferase class-III HHJ60_04895 PF01523 Putative modulator of DNA gyrase HHJ60_04900 PF10150 Ribonuclease E/G family HHJ60_04900 PF00575 S1 RNA binding domain HHJ60_04905 PF08003 Protein of unknown function (DUF1698) HHJ60_04955 PF00953 Glycosyl transferase family 4 HHJ60_04960 PF00202 Aminotransferase class-III HHJ60_04965 PF08335 GlnD PII-uridylyltransferase HHJ60_04965 PF01966 HD domain HHJ60_04970 PF00557 Metallopeptidase family M24 HHJ60_04975 PF01521 Iron-sulphur cluster biosynthesis HHJ60_04980 PF06062 Uncharacterised protein family (UPF0231) HHJ60_04985 PF00905 Penicillin binding protein transpeptidase domain HHJ60_04985 PF00912 Transglycosylase HHJ60_04985 PF14814 Bifunctional transglycosylase second domain HHJ60_04995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HHJ60_05000 PF04304 Protein of unknown function (DUF454) HHJ60_05005 PF01432 Peptidase family M3 HHJ60_05010 PF00152 tRNA synthetases class II (D, K and N) HHJ60_05015 PF00890 FAD binding domain HHJ60_05015 PF02910 Fumarate reductase flavoprotein C-term HHJ60_05020 PF13085 2Fe-2S iron-sulfur cluster binding domain HHJ60_05020 PF13183 4Fe-4S dicluster domain HHJ60_05025 PF02300 Fumarate reductase subunit C HHJ60_05030 PF02313 Fumarate reductase subunit D HHJ60_05035 PF01170 Putative RNA methylase family UPF0020 HHJ60_05035 PF02926 THUMP domain HHJ60_05035 PF10672 S-adenosylmethionine-dependent methyltransferase HHJ60_05040 PF01297 Zinc-uptake complex component A periplasmic HHJ60_05045 PF00899 ThiF family HHJ60_05050 PF03562 MltA specific insert domain HHJ60_05050 PF06725 3D domain HHJ60_05065 PF00313 'Cold-shock' DNA-binding domain HHJ60_05070 PF08245 Mur ligase middle domain HHJ60_05070 PF02875 Mur ligase family, glutamate ligase domain HHJ60_05070 PF01225 Mur ligase family, catalytic domain HHJ60_05075 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HHJ60_05080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HHJ60_05085 PF01722 BolA-like protein HHJ60_05090 PF13466 STAS domain HHJ60_05095 PF05494 MlaC protein HHJ60_05100 PF02470 MlaD protein HHJ60_05105 PF02405 Permease MlaE HHJ60_05110 PF00005 ABC transporter HHJ60_05120 PF06835 Lipopolysaccharide-assembly, LptC-related HHJ60_05125 PF03968 OstA-like protein HHJ60_05130 PF00005 ABC transporter HHJ60_05130 PF12399 Branched-chain amino acid ATP-binding cassette transporter HHJ60_05135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HHJ60_05145 PF03786 D-mannonate dehydratase (UxuA) HHJ60_05150 PF00392 Bacterial regulatory proteins, gntR family HHJ60_05150 PF07729 FCD domain HHJ60_05155 PF17137 Domain of unknown function (DUF5110) HHJ60_05155 PF01055 Glycosyl hydrolases family 31 HHJ60_05155 PF16338 Domain of unknown function (DUF4968) HHJ60_05155 PF13802 Galactose mutarotase-like HHJ60_05160 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HHJ60_05165 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HHJ60_05175 PF03480 Bacterial extracellular solute-binding protein, family 7 HHJ60_05180 PF00106 short chain dehydrogenase HHJ60_05185 PF02614 Glucuronate isomerase HHJ60_05195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HHJ60_05200 PF00155 Aminotransferase class I and II HHJ60_05205 PF00266 Aminotransferase class-V HHJ60_05210 PF04363 Protein of unknown function (DUF496) HHJ60_05215 PF03895 YadA-like membrane anchor domain HHJ60_05215 PF05662 Coiled stalk of trimeric autotransporter adhesin HHJ60_05215 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin HHJ60_05215 PF13018 Extended Signal Peptide of Type V secretion system HHJ60_05220 PF02378 Phosphotransferase system, EIIC HHJ60_05220 PF00367 phosphotransferase system, EIIB HHJ60_05225 PF05191 Adenylate kinase, active site lid HHJ60_05230 PF00561 alpha/beta hydrolase fold HHJ60_05235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HHJ60_05235 PF16582 Middle domain of thiamine pyrophosphate HHJ60_05235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HHJ60_05240 PF00425 chorismate binding enzyme HHJ60_05245 PF00155 Aminotransferase class I and II HHJ60_05250 PF07840 FadR C-terminal domain HHJ60_05250 PF00392 Bacterial regulatory proteins, gntR family HHJ60_05255 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HHJ60_05260 PF02600 Disulfide bond formation protein DsbB HHJ60_05265 PF03741 Integral membrane protein TerC family HHJ60_05270 PF02976 DNA mismatch repair enzyme MutH HHJ60_05275 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HHJ60_05275 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HHJ60_05280 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HHJ60_05295 PF03458 UPF0126 domain HHJ60_05300 PF00171 Aldehyde dehydrogenase family HHJ60_05305 PF00696 Amino acid kinase family HHJ60_05305 PF01842 ACT domain HHJ60_05310 PF00581 Rhodanese-like domain HHJ60_05315 PF04143 Sulphur transport HHJ60_05320 PF00709 Adenylosuccinate synthetase HHJ60_05335 PF01791 DeoC/LacD family aldolase HHJ60_05340 PF01979 Amidohydrolase family HHJ60_05345 PF00455 DeoR C terminal sensor domain HHJ60_05345 PF08220 DeoR-like helix-turn-helix domain HHJ60_05355 PF00884 Sulfatase HHJ60_05360 PF13186 Iron-sulfur cluster-binding domain HHJ60_05360 PF04055 Radical SAM superfamily HHJ60_05370 PF07470 Glycosyl Hydrolase Family 88 HHJ60_05375 PF03830 PTS system sorbose subfamily IIB component HHJ60_05375 PF03610 PTS system fructose IIA component HHJ60_05380 PF03613 PTS system mannose/fructose/sorbose family IID component HHJ60_05385 PF03609 PTS system sorbose-specific iic component HHJ60_05390 PF03830 PTS system sorbose subfamily IIB component HHJ60_05395 PF01380 SIS domain HHJ60_05400 PF08013 Tagatose 6 phosphate kinase HHJ60_05405 PF00884 Sulfatase HHJ60_05420 PF09339 IclR helix-turn-helix domain HHJ60_05420 PF01614 Bacterial transcriptional regulator HHJ60_05425 PF00294 pfkB family carbohydrate kinase HHJ60_05430 PF01081 KDPG and KHG aldolase HHJ60_05435 PF03009 Glycerophosphoryl diester phosphodiesterase family HHJ60_05440 PF08402 TOBE domain HHJ60_05440 PF00005 ABC transporter HHJ60_05445 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_05450 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_05460 PF00328 Histidine phosphatase superfamily (branch 2) HHJ60_05470 PF01132 Elongation factor P (EF-P) OB domain HHJ60_05470 PF09285 Elongation factor P, C-terminal HHJ60_05470 PF08207 Elongation factor P (EF-P) KOW-like domain HHJ60_05475 PF04055 Radical SAM superfamily HHJ60_05480 PF08525 Opacity-associated protein A N-terminal motif HHJ60_05480 PF04225 Opacity-associated protein A LysM-like domain HHJ60_05485 PF04381 Putative exonuclease, RdgC HHJ60_05490 PF14748 Pyrroline-5-carboxylate reductase dimerisation HHJ60_05490 PF03807 NADP oxidoreductase coenzyme F420-dependent HHJ60_05495 PF12832 MFS_1 like family HHJ60_05500 PF00589 Phage integrase family HHJ60_05500 PF02899 Phage integrase, N-terminal SAM-like domain HHJ60_05505 PF00800 Prephenate dehydratase HHJ60_05505 PF01817 Chorismate mutase type II HHJ60_05510 PF08240 Alcohol dehydrogenase GroES-like domain HHJ60_05510 PF00698 Acyl transferase domain HHJ60_05510 PF00550 Phosphopantetheine attachment site HHJ60_05510 PF16197 Ketoacyl-synthetase C-terminal extension HHJ60_05510 PF00109 Beta-ketoacyl synthase, N-terminal domain HHJ60_05510 PF14765 Polyketide synthase dehydratase HHJ60_05510 PF02801 Beta-ketoacyl synthase, C-terminal domain HHJ60_05510 PF00107 Zinc-binding dehydrogenase HHJ60_05510 PF08659 KR domain HHJ60_05525 PF00106 short chain dehydrogenase HHJ60_05530 PF01965 DJ-1/PfpI family HHJ60_05540 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HHJ60_05545 PF12327 FtsZ family, C-terminal domain HHJ60_05545 PF00091 Tubulin/FtsZ family, GTPase domain HHJ60_05550 PF02491 SHS2 domain inserted in FTSA HHJ60_05555 PF08478 POTRA domain, FtsQ-type HHJ60_05555 PF03799 Cell division protein FtsQ HHJ60_05560 PF01820 D-ala D-ala ligase N-terminus HHJ60_05560 PF07478 D-ala D-ala ligase C-terminus HHJ60_05565 PF01225 Mur ligase family, catalytic domain HHJ60_05565 PF02875 Mur ligase family, glutamate ligase domain HHJ60_05565 PF08245 Mur ligase middle domain HHJ60_05570 PF03033 Glycosyltransferase family 28 N-terminal domain HHJ60_05570 PF04101 Glycosyltransferase family 28 C-terminal domain HHJ60_05575 PF01098 Cell cycle protein HHJ60_05580 PF02875 Mur ligase family, glutamate ligase domain HHJ60_05580 PF08245 Mur ligase middle domain HHJ60_05585 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HHJ60_05585 PF00953 Glycosyl transferase family 4 HHJ60_05590 PF01225 Mur ligase family, catalytic domain HHJ60_05590 PF02875 Mur ligase family, glutamate ligase domain HHJ60_05590 PF08245 Mur ligase middle domain HHJ60_05595 PF08245 Mur ligase middle domain HHJ60_05595 PF01225 Mur ligase family, catalytic domain HHJ60_05595 PF02875 Mur ligase family, glutamate ligase domain HHJ60_05600 PF00905 Penicillin binding protein transpeptidase domain HHJ60_05600 PF03717 Penicillin-binding Protein dimerisation domain HHJ60_05605 PF04999 Cell division protein FtsL HHJ60_05610 PF01795 MraW methylase family HHJ60_05615 PF02381 MraZ protein, putative antitoxin-like HHJ60_05625 PF13718 GNAT acetyltransferase 2 HHJ60_05625 PF05127 Helicase HHJ60_05625 PF17176 tRNA-binding domain HHJ60_05630 PF02130 Uncharacterized protein family UPF0054 HHJ60_05635 PF02562 PhoH-like protein HHJ60_05640 PF00149 Calcineurin-like phosphoesterase HHJ60_05645 PF01553 Acyltransferase HHJ60_05650 PF07732 Multicopper oxidase HHJ60_05655 PF13230 Glutamine amidotransferases class-II HHJ60_05660 PF03222 Tryptophan/tyrosine permease family HHJ60_05665 PF03315 Serine dehydratase beta chain HHJ60_05665 PF03313 Serine dehydratase alpha chain HHJ60_05670 PF01578 Cytochrome C assembly protein HHJ60_05670 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HHJ60_05675 PF08534 Redoxin HHJ60_05680 PF03918 Cytochrome C biogenesis protein HHJ60_05685 PF03918 Cytochrome C biogenesis protein HHJ60_05695 PF01336 OB-fold nucleic acid binding domain HHJ60_05695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HHJ60_05695 PF07733 Bacterial DNA polymerase III alpha NTPase domain HHJ60_05695 PF02811 PHP domain HHJ60_05695 PF14579 Helix-hairpin-helix motif HHJ60_05700 PF03916 Polysulphide reductase, NrfD HHJ60_05705 PF13247 4Fe-4S dicluster domain HHJ60_05715 PF02335 Cytochrome c552 HHJ60_05720 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HHJ60_05720 PF04055 Radical SAM superfamily HHJ60_05725 PF03099 Biotin/lipoate A/B protein ligase family HHJ60_05730 PF04359 Protein of unknown function (DUF493) HHJ60_05735 PF07943 Penicillin-binding protein 5, C-terminal domain HHJ60_05735 PF00768 D-alanyl-D-alanine carboxypeptidase HHJ60_05740 PF05036 Sporulation related domain HHJ60_05740 PF03330 Lytic transglycolase HHJ60_05745 PF01098 Cell cycle protein HHJ60_05750 PF03717 Penicillin-binding Protein dimerisation domain HHJ60_05750 PF00905 Penicillin binding protein transpeptidase domain HHJ60_05755 PF02590 Predicted SPOUT methyltransferase HHJ60_05765 PF00270 DEAD/DEAH box helicase HHJ60_05765 PF00271 Helicase conserved C-terminal domain HHJ60_05770 PF07498 Rho termination factor, N-terminal domain HHJ60_05770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HHJ60_05770 PF07497 Rho termination factor, RNA-binding domain HHJ60_05775 PF07690 Major Facilitator Superfamily HHJ60_05785 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HHJ60_05790 PF00485 Phosphoribulokinase / Uridine kinase family HHJ60_05795 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_05800 PF00005 ABC transporter HHJ60_05800 PF08402 TOBE domain HHJ60_05825 PF00462 Glutaredoxin HHJ60_05840 PF04011 LemA family HHJ60_05845 PF00691 OmpA family HHJ60_05845 PF01389 OmpA-like transmembrane domain HHJ60_05850 PF01565 FAD binding domain HHJ60_05850 PF02913 FAD linked oxidases, C-terminal domain HHJ60_05850 PF13183 4Fe-4S dicluster domain HHJ60_05855 PF03061 Thioesterase superfamily HHJ60_05860 PF00762 Ferrochelatase HHJ60_05865 PF03922 OmpW family HHJ60_05875 PF04279 Intracellular septation protein A HHJ60_05880 PF03061 Thioesterase superfamily HHJ60_05885 PF03795 YCII-related domain HHJ60_05890 PF11791 Aconitate B N-terminal domain HHJ60_05890 PF06434 Aconitate hydratase 2 N-terminus HHJ60_05890 PF00330 Aconitase family (aconitate hydratase) HHJ60_05895 PF09157 Pseudouridine synthase II TruB, C-terminal HHJ60_05895 PF16198 tRNA pseudouridylate synthase B C-terminal domain HHJ60_05895 PF01509 TruB family pseudouridylate synthase (N terminal domain) HHJ60_05900 PF02033 Ribosome-binding factor A HHJ60_05905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HHJ60_05905 PF00529 HlyD membrane-fusion protein of T1SS HHJ60_05910 PF11742 Protein of unknown function (DUF3302) HHJ60_05915 PF04760 Translation initiation factor IF-2, N-terminal region HHJ60_05915 PF08364 Bacterial translation initiation factor IF-2 associated region HHJ60_05915 PF11987 Translation-initiation factor 2 HHJ60_05915 PF00009 Elongation factor Tu GTP binding domain HHJ60_05920 PF00575 S1 RNA binding domain HHJ60_05920 PF08529 NusA N-terminal domain HHJ60_05920 PF13184 NusA-like KH domain HHJ60_05925 PF17384 RimP C-terminal SH3 domain HHJ60_05925 PF02576 RimP N-terminal domain HHJ60_05940 PF01235 Sodium:alanine symporter family HHJ60_05955 PF00480 ROK family HHJ60_05960 PF01569 PAP2 superfamily HHJ60_05965 PF00925 GTP cyclohydrolase II HHJ60_05980 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HHJ60_05990 PF00677 Lumazine binding domain HHJ60_05995 PF01554 MatE HHJ60_06000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ60_06000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ60_06005 PF01386 Ribosomal L25p family HHJ60_06010 PF09335 SNARE associated Golgi protein HHJ60_06015 PF01541 GIY-YIG catalytic domain HHJ60_06015 PF02151 UvrB/uvrC motif HHJ60_06015 PF08459 UvrC Helix-hairpin-helix N-terminal HHJ60_06020 PF00005 ABC transporter HHJ60_06025 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_06030 PF09084 NMT1/THI5 like HHJ60_06035 PF02348 Cytidylyltransferase HHJ60_06040 PF03966 Trm112p-like protein HHJ60_06045 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HHJ60_06050 PF00664 ABC transporter transmembrane region HHJ60_06050 PF00005 ABC transporter HHJ60_06055 PF03772 Competence protein HHJ60_06055 PF13567 Domain of unknown function (DUF4131) HHJ60_06055 PF00753 Metallo-beta-lactamase superfamily HHJ60_06060 PF02110 Hydroxyethylthiazole kinase family HHJ60_06065 PF08543 Phosphomethylpyrimidine kinase HHJ60_06070 PF02581 Thiamine monophosphate synthase HHJ60_06080 PF02395 Immunoglobulin A1 protease HHJ60_06080 PF03797 Autotransporter beta-domain HHJ60_06080 PF03212 Pertactin HHJ60_06085 PF18073 Rubredoxin metal binding domain HHJ60_06090 PF01928 CYTH domain HHJ60_06095 PF01865 Protein of unknown function DUF47 HHJ60_06100 PF01384 Phosphate transporter family HHJ60_06105 PF00484 Carbonic anhydrase HHJ60_06110 PF02222 ATP-grasp domain HHJ60_06110 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HHJ60_06115 PF00155 Aminotransferase class I and II HHJ60_06120 PF00312 Ribosomal protein S15 HHJ60_06125 PF05651 Putative sugar diacid recognition HHJ60_06125 PF17853 GGDEF-like domain HHJ60_06125 PF13556 PucR C-terminal helix-turn-helix domain HHJ60_06130 PF02447 GntP family permease HHJ60_06135 PF02595 Glycerate kinase family HHJ60_06140 PF05496 Holliday junction DNA helicase RuvB P-loop domain HHJ60_06140 PF05491 RuvB C-terminal winged helix domain HHJ60_06140 PF17864 RuvB AAA lid domain HHJ60_06145 PF07499 RuvA, C-terminal domain HHJ60_06145 PF01330 RuvA N terminal domain HHJ60_06150 PF02075 Crossover junction endodeoxyribonuclease RuvC HHJ60_06155 PF01709 Transcriptional regulator HHJ60_06160 PF00293 NUDIX domain HHJ60_06165 PF01336 OB-fold nucleic acid binding domain HHJ60_06165 PF00152 tRNA synthetases class II (D, K and N) HHJ60_06165 PF02938 GAD domain HHJ60_06170 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HHJ60_06175 PF04221 RelB antitoxin HHJ60_06180 PF13649 Methyltransferase domain HHJ60_06190 PF13609 Gram-negative porin HHJ60_06195 PF13609 Gram-negative porin HHJ60_06205 PF00375 Sodium:dicarboxylate symporter family HHJ60_06210 PF00717 Peptidase S24-like HHJ60_06220 PF00342 Phosphoglucose isomerase HHJ60_06225 PF01168 Alanine racemase, N-terminal domain HHJ60_06225 PF00842 Alanine racemase, C-terminal domain HHJ60_06230 PF00772 DnaB-like helicase N terminal domain HHJ60_06230 PF03796 DnaB-like helicase C terminal domain HHJ60_06235 PF06185 YecM protein HHJ60_06240 PF03485 Arginyl tRNA synthetase N terminal domain HHJ60_06240 PF05746 DALR anticodon binding domain HHJ60_06240 PF00750 tRNA synthetases class I (R) HHJ60_06245 PF03459 TOBE domain HHJ60_06245 PF00005 ABC transporter HHJ60_06250 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_06260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_06260 PF03459 TOBE domain HHJ60_06265 PF03616 Sodium/glutamate symporter HHJ60_06270 PF09093 Lyase, catalytic HHJ60_06270 PF09092 Lyase, N terminal HHJ60_06270 PF02278 Polysaccharide lyase family 8, super-sandwich domain HHJ60_06270 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HHJ60_06280 PF01925 Sulfite exporter TauE/SafE HHJ60_06285 PF00027 Cyclic nucleotide-binding domain HHJ60_06290 PF06968 Biotin and Thiamin Synthesis associated domain HHJ60_06290 PF04055 Radical SAM superfamily HHJ60_06295 PF00005 ABC transporter HHJ60_06300 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_06310 PF08335 GlnD PII-uridylyltransferase HHJ60_06310 PF03710 Glutamate-ammonia ligase adenylyltransferase HHJ60_06315 PF01546 Peptidase family M20/M25/M40 HHJ60_06315 PF07687 Peptidase dimerisation domain HHJ60_06320 PF08402 TOBE domain HHJ60_06320 PF00005 ABC transporter HHJ60_06325 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_06330 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_06335 PF13416 Bacterial extracellular solute-binding protein HHJ60_06345 PF01638 HxlR-like helix-turn-helix HHJ60_06350 PF03949 Malic enzyme, NAD binding domain HHJ60_06350 PF00390 Malic enzyme, N-terminal domain HHJ60_06360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ60_06360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ60_06365 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_06370 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_06380 PF17912 MalK OB fold domain HHJ60_06380 PF00005 ABC transporter HHJ60_06380 PF03459 TOBE domain HHJ60_06385 PF00392 Bacterial regulatory proteins, gntR family HHJ60_06385 PF07729 FCD domain HHJ60_06390 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ60_06390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ60_06395 PF02554 Carbon starvation protein CstA HHJ60_06400 PF12169 DNA polymerase III subunits gamma and tau domain III HHJ60_06400 PF12170 DNA polymerase III tau subunit V interacting with alpha HHJ60_06405 PF00156 Phosphoribosyl transferase domain HHJ60_06410 PF03279 Bacterial lipid A biosynthesis acyltransferase HHJ60_06415 PF01925 Sulfite exporter TauE/SafE HHJ60_06420 PF03411 Penicillin-insensitive murein endopeptidase HHJ60_06425 PF01264 Chorismate synthase HHJ60_06430 PF12794 Mechanosensitive ion channel inner membrane domain 1 HHJ60_06430 PF00924 Mechanosensitive ion channel HHJ60_06430 PF12795 Mechanosensitive ion channel porin domain HHJ60_06435 PF00501 AMP-binding enzyme HHJ60_06440 PF17206 SeqA protein N-terminal domain HHJ60_06440 PF03925 SeqA protein C-terminal domain HHJ60_06445 PF00561 alpha/beta hydrolase fold HHJ60_06450 PF01402 Ribbon-helix-helix protein, copG family HHJ60_06455 PF00258 Flavodoxin HHJ60_06460 PF01475 Ferric uptake regulator family HHJ60_06470 PF00521 DNA gyrase/topoisomerase IV, subunit A HHJ60_06470 PF03989 DNA gyrase C-terminal domain, beta-propeller HHJ60_06475 PF04247 Invasion gene expression up-regulator, SirB HHJ60_06485 PF00893 Small Multidrug Resistance protein HHJ60_06490 PF00106 short chain dehydrogenase HHJ60_06500 PF01965 DJ-1/PfpI family HHJ60_06515 PF07690 Major Facilitator Superfamily HHJ60_06530 PF02525 Flavodoxin-like fold HHJ60_06535 PF01066 CDP-alcohol phosphatidyltransferase HHJ60_06540 PF08264 Anticodon-binding domain of tRNA HHJ60_06540 PF00133 tRNA synthetases class I (I, L, M and V) HHJ60_06540 PF10458 Valyl tRNA synthetase tRNA binding arm HHJ60_06550 PF00145 C-5 cytosine-specific DNA methylase HHJ60_06555 PF06414 Zeta toxin HHJ60_06565 PF13673 Acetyltransferase (GNAT) domain HHJ60_06570 PF04364 DNA polymerase III chi subunit, HolC HHJ60_06575 PF10415 Fumarase C C-terminus HHJ60_06575 PF00206 Lyase HHJ60_06580 PF04715 Anthranilate synthase component I, N terminal region HHJ60_06580 PF00425 chorismate binding enzyme HHJ60_06585 PF00117 Glutamine amidotransferase class-I HHJ60_06590 PF14552 Tautomerase enzyme HHJ60_06595 PF00591 Glycosyl transferase family, a/b domain HHJ60_06595 PF02885 Glycosyl transferase family, helical bundle domain HHJ60_06600 PF00218 Indole-3-glycerol phosphate synthase HHJ60_06600 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HHJ60_06605 PF00291 Pyridoxal-phosphate dependent enzyme HHJ60_06610 PF00290 Tryptophan synthase alpha chain HHJ60_06615 PF07411 Domain of unknown function (DUF1508) HHJ60_06625 PF02237 Biotin protein ligase C terminal domain HHJ60_06625 PF03099 Biotin/lipoate A/B protein ligase family HHJ60_06630 PF00571 CBS domain HHJ60_06630 PF00478 IMP dehydrogenase / GMP reductase domain HHJ60_06645 PF02540 NAD synthase HHJ60_06645 PF00117 Glutamine amidotransferase class-I HHJ60_06645 PF00958 GMP synthase C terminal domain HHJ60_06650 PF14659 Phage integrase, N-terminal SAM-like domain HHJ60_06650 PF13356 Arm DNA-binding domain HHJ60_06650 PF00589 Phage integrase family HHJ60_06685 PF10549 ORF11CD3 domain HHJ60_06685 PF09669 Phage regulatory protein Rha (Phage_pRha) HHJ60_06710 PF00182 Chitinase class I HHJ60_06735 PF03099 Biotin/lipoate A/B protein ligase family HHJ60_06735 PF00293 NUDIX domain HHJ60_06895 PF01695 IstB-like ATP binding protein HHJ60_06920 PF00717 Peptidase S24-like HHJ60_06920 PF01726 LexA DNA binding domain HHJ60_06940 PF07411 Domain of unknown function (DUF1508) HHJ60_06990 PF00436 Single-strand binding protein family HHJ60_07005 PF04381 Putative exonuclease, RdgC HHJ60_07050 PF00145 C-5 cytosine-specific DNA methylase HHJ60_07070 PF14256 YwiC-like protein HHJ60_07075 PF01042 Endoribonuclease L-PSP HHJ60_07080 PF03372 Endonuclease/Exonuclease/phosphatase family HHJ60_07085 PF00999 Sodium/hydrogen exchanger family HHJ60_07095 PF00005 ABC transporter HHJ60_07095 PF03412 Peptidase C39 family HHJ60_07095 PF00664 ABC transporter transmembrane region HHJ60_07160 PF01276 Orn/Lys/Arg decarboxylase, major domain HHJ60_07160 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HHJ60_07160 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HHJ60_07165 PF13520 Amino acid permease HHJ60_07170 PF04284 Protein of unknown function (DUF441) HHJ60_07175 PF00403 Heavy-metal-associated domain HHJ60_07185 PF02634 FdhD/NarQ family HHJ60_07195 PF13247 4Fe-4S dicluster domain HHJ60_07195 PF09163 Formate dehydrogenase N, transmembrane HHJ60_07200 PF01292 Prokaryotic cytochrome b561 HHJ60_07205 PF04216 Protein involved in formate dehydrogenase formation HHJ60_07215 PF07715 TonB-dependent Receptor Plug Domain HHJ60_07215 PF00593 TonB dependent receptor HHJ60_07220 PF05437 Branched-chain amino acid transport protein (AzlD) HHJ60_07225 PF03591 AzlC protein HHJ60_07230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_07230 PF03466 LysR substrate binding domain HHJ60_07235 PF08267 Cobalamin-independent synthase, N-terminal domain HHJ60_07235 PF01717 Cobalamin-independent synthase, Catalytic domain HHJ60_07240 PF00939 Sodium:sulfate symporter transmembrane region HHJ60_07250 PF00270 DEAD/DEAH box helicase HHJ60_07250 PF11898 Domain of unknown function (DUF3418) HHJ60_07250 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HHJ60_07250 PF04408 Helicase associated domain (HA2) HHJ60_07250 PF00271 Helicase conserved C-terminal domain HHJ60_07255 PF00453 Ribosomal protein L20 HHJ60_07260 PF01632 Ribosomal protein L35 HHJ60_07265 PF05198 Translation initiation factor IF-3, N-terminal domain HHJ60_07265 PF00707 Translation initiation factor IF-3, C-terminal domain HHJ60_07270 PF00226 DnaJ domain HHJ60_07270 PF00684 DnaJ central domain HHJ60_07270 PF01556 DnaJ C terminal domain HHJ60_07275 PF00012 Hsp70 protein HHJ60_07280 PF00950 ABC 3 transport family HHJ60_07285 PF00005 ABC transporter HHJ60_07290 PF01551 Peptidase family M23 HHJ60_07290 PF04225 Opacity-associated protein A LysM-like domain HHJ60_07295 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HHJ60_07300 PF01668 SmpB protein HHJ60_07305 PF13742 OB-fold nucleic acid binding domain HHJ60_07305 PF02601 Exonuclease VII, large subunit HHJ60_07310 PF08007 Cupin superfamily protein HHJ60_07315 PF03658 RnfH family Ubiquitin HHJ60_07320 PF03364 Polyketide cyclase / dehydrase and lipid transport HHJ60_07325 PF01195 Peptidyl-tRNA hydrolase HHJ60_07330 PF06071 Protein of unknown function (DUF933) HHJ60_07330 PF01926 50S ribosome-binding GTPase HHJ60_07340 PF13520 Amino acid permease HHJ60_07345 PF18024 Helix-turn-helix domain HHJ60_07345 PF00158 Sigma-54 interaction domain HHJ60_07350 PF05128 Domain of unknown function (DUF697) HHJ60_07355 PF04317 YcjX-like family, DUF463 HHJ60_07360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HHJ60_07365 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_07370 PF12911 N-terminal TM domain of oligopeptide transport permease C HHJ60_07370 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_07375 PF00005 ABC transporter HHJ60_07375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HHJ60_07380 PF00005 ABC transporter HHJ60_07385 PF00444 Ribosomal protein L36 HHJ60_07390 PF01197 Ribosomal protein L31 HHJ60_07395 PF00085 Thioredoxin HHJ60_07395 PF11412 Disulphide bond corrector protein DsbC HHJ60_07395 PF02683 Cytochrome C biogenesis protein transmembrane region HHJ60_07405 PF07681 DoxX HHJ60_07410 PF01808 AICARFT/IMPCHase bienzyme HHJ60_07410 PF02142 MGS-like domain HHJ60_07420 PF02843 Phosphoribosylglycinamide synthetase, C domain HHJ60_07420 PF02844 Phosphoribosylglycinamide synthetase, N domain HHJ60_07420 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HHJ60_07425 PF00464 Serine hydroxymethyltransferase HHJ60_07430 PF00486 Transcriptional regulatory protein, C terminal HHJ60_07430 PF00072 Response regulator receiver domain HHJ60_07435 PF03550 Outer membrane lipoprotein LolB HHJ60_07440 PF08544 GHMP kinases C terminal HHJ60_07440 PF00288 GHMP kinases N terminal domain HHJ60_07445 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HHJ60_07445 PF14572 Phosphoribosyl synthetase-associated domain HHJ60_07450 PF01253 Translation initiation factor SUI1 HHJ60_07455 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HHJ60_07460 PF18073 Rubredoxin metal binding domain HHJ60_07465 PF06305 Lipopolysaccharide assembly protein A domain HHJ60_07470 PF00216 Bacterial DNA-binding protein HHJ60_07475 PF00575 S1 RNA binding domain HHJ60_07480 PF02224 Cytidylate kinase HHJ60_07490 PF00675 Insulinase (Peptidase family M16) HHJ60_07490 PF05193 Peptidase M16 inactive domain HHJ60_07495 PF04393 Protein of unknown function (DUF535) HHJ60_07500 PF00764 Arginosuccinate synthase HHJ60_07505 PF01370 NAD dependent epimerase/dehydratase family HHJ60_07520 PF01259 SAICAR synthetase HHJ60_07525 PF00009 Elongation factor Tu GTP binding domain HHJ60_07525 PF03144 Elongation factor Tu domain 2 HHJ60_07525 PF16658 Class II release factor RF3, C-terminal domain HHJ60_07530 PF00889 Elongation factor TS HHJ60_07535 PF00318 Ribosomal protein S2 HHJ60_07540 PF13145 PPIC-type PPIASE domain HHJ60_07545 PF05362 Lon protease (S16) C-terminal proteolytic domain HHJ60_07545 PF02190 ATP-dependent protease La (LON) substrate-binding domain HHJ60_07545 PF00004 ATPase family associated with various cellular activities (AAA) HHJ60_07550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HHJ60_07550 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ60_07555 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HHJ60_07560 PF06804 NlpB/DapX lipoprotein HHJ60_07565 PF00701 Dihydrodipicolinate synthetase family HHJ60_07570 PF00578 AhpC/TSA family HHJ60_07575 PF00171 Aldehyde dehydrogenase family HHJ60_07575 PF00465 Iron-containing alcohol dehydrogenase HHJ60_07580 PF00717 Peptidase S24-like HHJ60_07580 PF01726 LexA DNA binding domain HHJ60_07585 PF01553 Acyltransferase HHJ60_07590 PF02462 Opacity family porin protein HHJ60_07595 PF02080 TrkA-C domain HHJ60_07595 PF06826 Predicted Permease Membrane Region HHJ60_07600 PF00005 ABC transporter HHJ60_07600 PF06472 ABC transporter transmembrane region 2 HHJ60_07605 PF05175 Methyltransferase small domain HHJ60_07605 PF08468 Methyltransferase small domain N-terminal HHJ60_07610 PF10063 Uncharacterized integral membrane protein (DUF2301) HHJ60_07615 PF02311 AraC-like ligand binding domain HHJ60_07615 PF12833 Helix-turn-helix domain HHJ60_07620 PF02627 Carboxymuconolactone decarboxylase family HHJ60_07625 PF01235 Sodium:alanine symporter family HHJ60_07635 PF01121 Dephospho-CoA kinase HHJ60_07645 PF00482 Type II secretion system (T2SS), protein F HHJ60_07650 PF03610 PTS system fructose IIA component HHJ60_07650 PF03830 PTS system sorbose subfamily IIB component HHJ60_07655 PF03609 PTS system sorbose-specific iic component HHJ60_07660 PF03613 PTS system mannose/fructose/sorbose family IID component HHJ60_07665 PF06173 Protein of unknown function (DUF986) HHJ60_07670 PF01238 Phosphomannose isomerase type I HHJ60_07675 PF00075 RNase H HHJ60_07680 PF00929 Exonuclease HHJ60_07695 PF00586 AIR synthase related protein, N-terminal domain HHJ60_07695 PF02769 AIR synthase related protein, C-terminal domain HHJ60_07700 PF00551 Formyl transferase HHJ60_07705 PF00156 Phosphoribosyl transferase domain HHJ60_07710 PF00639 PPIC-type PPIASE domain HHJ60_07710 PF09312 SurA N-terminal domain HHJ60_07715 PF00398 Ribosomal RNA adenine dimethylase HHJ60_07720 PF00149 Calcineurin-like phosphoesterase HHJ60_07725 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) HHJ60_07730 PF08264 Anticodon-binding domain of tRNA HHJ60_07730 PF00133 tRNA synthetases class I (I, L, M and V) HHJ60_07730 PF13603 Leucyl-tRNA synthetase, Domain 2 HHJ60_07735 PF04390 Lipopolysaccharide-assembly HHJ60_07740 PF06144 DNA polymerase III, delta subunit HHJ60_07740 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HHJ60_07750 PF01351 Ribonuclease HII HHJ60_07755 PF02684 Lipid-A-disaccharide synthetase HHJ60_07760 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HHJ60_07760 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ60_07765 PF07977 FabA-like domain HHJ60_07770 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HHJ60_07770 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ60_07775 PF03938 Outer membrane protein (OmpH-like) HHJ60_07780 PF07244 Surface antigen variable number repeat HHJ60_07780 PF01103 Surface antigen HHJ60_07785 PF02163 Peptidase family M50 HHJ60_07795 PF01255 Putative undecaprenyl diphosphate synthase HHJ60_07800 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HHJ60_07800 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HHJ60_07800 PF13288 DXP reductoisomerase C-terminal domain HHJ60_07805 PF01765 Ribosome recycling factor HHJ60_07810 PF00696 Amino acid kinase family HHJ60_07815 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HHJ60_07815 PF00437 Type II/IV secretion system protein HHJ60_07820 PF07963 Prokaryotic N-terminal methylation motif HHJ60_07825 PF01510 N-acetylmuramoyl-L-alanine amidase HHJ60_07835 PF00293 NUDIX domain HHJ60_07840 PF01925 Sulfite exporter TauE/SafE HHJ60_07845 PF01790 Prolipoprotein diacylglyceryl transferase HHJ60_07850 PF00303 Thymidylate synthase HHJ60_07855 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HHJ60_07860 PF01979 Amidohydrolase family HHJ60_07865 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HHJ60_07870 PF14743 DNA ligase OB-like domain HHJ60_07870 PF01068 ATP dependent DNA ligase domain HHJ60_07880 PF05159 Capsule polysaccharide biosynthesis protein HHJ60_07885 PF05159 Capsule polysaccharide biosynthesis protein HHJ60_07895 PF00535 Glycosyl transferase family 2 HHJ60_07905 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HHJ60_07905 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HHJ60_07905 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HHJ60_07910 PF00535 Glycosyl transferase family 2 HHJ60_07915 PF02563 Polysaccharide biosynthesis/export protein HHJ60_07925 PF01061 ABC-2 type transporter HHJ60_07930 PF00005 ABC transporter HHJ60_07940 PF04055 Radical SAM superfamily HHJ60_07945 PF01242 6-pyruvoyl tetrahydropterin synthase HHJ60_07950 PF06508 Queuosine biosynthesis protein QueC HHJ60_07955 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HHJ60_08105 PF17288 Terminase RNAseH like domain HHJ60_08105 PF04466 Phage terminase large subunit HHJ60_08110 PF03592 Terminase small subunit HHJ60_08135 PF05106 Phage holin family (Lysis protein S) HHJ60_08160 PF02498 BRO family, N-terminal domain HHJ60_08160 PF10548 P22AR C-terminal domain HHJ60_08165 PF05772 NinB protein HHJ60_08220 PF05106 Phage holin family (Lysis protein S) HHJ60_08245 PF03592 Terminase small subunit HHJ60_08250 PF04466 Phage terminase large subunit HHJ60_08250 PF17288 Terminase RNAseH like domain HHJ60_08255 PF06381 Protein of unknown function (DUF1073) HHJ60_08260 PF04233 Phage Mu protein F like protein HHJ60_08270 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) HHJ60_08315 PF10876 Phage tail assemb.y chaperone protein, TAC HHJ60_08345 PF01051 Initiator Replication protein HHJ60_08415 PF01546 Peptidase family M20/M25/M40 HHJ60_08415 PF07687 Peptidase dimerisation domain HHJ60_08420 PF01118 Semialdehyde dehydrogenase, NAD binding domain HHJ60_08420 PF02774 Semialdehyde dehydrogenase, dimerisation domain HHJ60_08425 PF00696 Amino acid kinase family HHJ60_08430 PF14698 Argininosuccinate lyase C-terminal HHJ60_08430 PF00206 Lyase HHJ60_08445 PF08521 Two-component sensor kinase N-terminal HHJ60_08445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ60_08445 PF00512 His Kinase A (phospho-acceptor) domain HHJ60_08450 PF00486 Transcriptional regulatory protein, C terminal HHJ60_08450 PF00072 Response regulator receiver domain HHJ60_08460 PF02401 LytB protein HHJ60_08465 PF01252 Signal peptidase (SPase) II HHJ60_08470 PF08264 Anticodon-binding domain of tRNA HHJ60_08470 PF00133 tRNA synthetases class I (I, L, M and V) HHJ60_08475 PF01687 Riboflavin kinase HHJ60_08475 PF06574 FAD synthetase HHJ60_08480 PF12631 MnmE helical domain HHJ60_08480 PF01926 50S ribosome-binding GTPase HHJ60_08480 PF10396 GTP-binding protein TrmE N-terminus HHJ60_08490 PF00210 Ferritin-like domain HHJ60_08495 PF00117 Glutamine amidotransferase class-I HHJ60_08500 PF00425 chorismate binding enzyme HHJ60_08505 PF01063 Amino-transferase class IV HHJ60_08525 PF01042 Endoribonuclease L-PSP HHJ60_08530 PF01810 LysE type translocator HHJ60_08535 PF00834 Ribulose-phosphate 3 epimerase family HHJ60_08540 PF13419 Haloacid dehalogenase-like hydrolase HHJ60_08545 PF00579 tRNA synthetases class I (W and Y) HHJ60_08550 PF02222 ATP-grasp domain HHJ60_08550 PF01370 NAD dependent epimerase/dehydratase family HHJ60_08555 PF17364 Family of unknown function (DUF5389) HHJ60_08560 PF01694 Rhomboid family HHJ60_08565 PF08220 DeoR-like helix-turn-helix domain HHJ60_08565 PF00455 DeoR C terminal sensor domain HHJ60_08570 PF02754 Cysteine-rich domain HHJ60_08570 PF13183 4Fe-4S dicluster domain HHJ60_08575 PF00890 FAD binding domain HHJ60_08580 PF04324 BFD-like [2Fe-2S] binding domain HHJ60_08580 PF01266 FAD dependent oxidoreductase HHJ60_08585 PF07690 Major Facilitator Superfamily HHJ60_08590 PF03009 Glycerophosphoryl diester phosphodiesterase family HHJ60_08595 PF00448 SRP54-type protein, GTPase domain HHJ60_08595 PF02881 SRP54-type protein, helical bundle domain HHJ60_08605 PF17782 DprA winged helix domain HHJ60_08605 PF02481 DNA recombination-mediator protein A HHJ60_08615 PF04055 Radical SAM superfamily HHJ60_08620 PF01594 AI-2E family transporter HHJ60_08625 PF00543 Nitrogen regulatory protein P-II HHJ60_08630 PF00994 Probable molybdopterin binding domain HHJ60_08645 PF01066 CDP-alcohol phosphatidyltransferase HHJ60_08650 PF02080 TrkA-C domain HHJ60_08650 PF03600 Citrate transporter HHJ60_08655 PF13464 Domain of unknown function (DUF4115) HHJ60_08660 PF04551 GcpE protein HHJ60_08665 PF13393 Histidyl-tRNA synthetase HHJ60_08665 PF03129 Anticodon binding domain HHJ60_08670 PF09976 Tetratricopeptide repeat-like domain HHJ60_08675 PF04932 O-Antigen ligase HHJ60_08690 PF01370 NAD dependent epimerase/dehydratase family HHJ60_08695 PF16363 GDP-mannose 4,6 dehydratase HHJ60_08700 PF00483 Nucleotidyl transferase HHJ60_08700 PF01050 Mannose-6-phosphate isomerase HHJ60_08705 PF04751 Protein of unknown function (DUF615) HHJ60_08710 PF01523 Putative modulator of DNA gyrase HHJ60_08715 PF00156 Phosphoribosyl transferase domain HHJ60_08720 PF17274 Family of unknown function (DUF5339) HHJ60_08725 PF01654 Cytochrome bd terminal oxidase subunit I HHJ60_08730 PF02322 Cytochrome bd terminal oxidase subunit II HHJ60_08740 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HHJ60_08750 PF03061 Thioesterase superfamily HHJ60_08755 PF01618 MotA/TolQ/ExbB proton channel family HHJ60_08760 PF02472 Biopolymer transport protein ExbD/TolR HHJ60_08765 PF06519 TolA C-terminal HHJ60_08770 PF07676 WD40-like Beta Propeller Repeat HHJ60_08770 PF04052 TolB amino-terminal domain HHJ60_08775 PF00691 OmpA family HHJ60_08790 PF07963 Prokaryotic N-terminal methylation motif HHJ60_08810 PF17946 RecC C-terminal domain HHJ60_08820 PF00596 Class II Aldolase and Adducin N-terminal domain HHJ60_08825 PF01261 Xylose isomerase-like TIM barrel HHJ60_08830 PF00455 DeoR C terminal sensor domain HHJ60_08830 PF08220 DeoR-like helix-turn-helix domain HHJ60_08840 PF03611 PTS system sugar-specific permease component HHJ60_08845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HHJ60_08850 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HHJ60_08855 PF03480 Bacterial extracellular solute-binding protein, family 7 HHJ60_08860 PF01344 Kelch motif HHJ60_08865 PF04977 Septum formation initiator HHJ60_08870 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HHJ60_08925 PF09383 NIL domain HHJ60_08925 PF00005 ABC transporter HHJ60_08930 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_08935 PF03180 NLPA lipoprotein HHJ60_08940 PF01914 MarC family integral membrane protein HHJ60_08945 PF00588 SpoU rRNA Methylase family HHJ60_08950 PF05525 Branched-chain amino acid transport protein HHJ60_08955 PF00483 Nucleotidyl transferase HHJ60_08960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HHJ60_08960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HHJ60_08960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HHJ60_08960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HHJ60_08965 PF02599 Global regulator protein family HHJ60_08970 PF02272 DHHA1 domain HHJ60_08970 PF01411 tRNA synthetases class II (A) HHJ60_08970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HHJ60_08975 PF00582 Universal stress protein family HHJ60_08980 PF03819 MazG nucleotide pyrophosphohydrolase domain HHJ60_08985 PF00892 EamA-like transporter family HHJ60_08990 PF03466 LysR substrate binding domain HHJ60_08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_08995 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HHJ60_08995 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HHJ60_09000 PF00884 Sulfatase HHJ60_09000 PF16347 Domain of unknown function (DUF4976) HHJ60_09010 PF00474 Sodium:solute symporter family HHJ60_09020 PF04277 Oxaloacetate decarboxylase, gamma chain HHJ60_09025 PF00682 HMGL-like HHJ60_09025 PF00364 Biotin-requiring enzyme HHJ60_09025 PF02436 Conserved carboxylase domain HHJ60_09030 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HHJ60_09045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HHJ60_09045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HHJ60_09050 PF01491 Frataxin-like domain HHJ60_09055 PF09382 RQC domain HHJ60_09055 PF16124 RecQ zinc-binding HHJ60_09055 PF00570 HRDC domain HHJ60_09055 PF00271 Helicase conserved C-terminal domain HHJ60_09055 PF00270 DEAD/DEAH box helicase HHJ60_09060 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HHJ60_09060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HHJ60_09060 PF02142 MGS-like domain HHJ60_09075 PF00156 Phosphoribosyl transferase domain HHJ60_09080 PF07687 Peptidase dimerisation domain HHJ60_09080 PF01546 Peptidase family M20/M25/M40 HHJ60_09085 PF04851 Type III restriction enzyme, res subunit HHJ60_09085 PF08774 VRR-NUC domain HHJ60_09090 PF18273 Type III R-M EcoP15I C-terminal domain HHJ60_09090 PF01555 DNA methylase HHJ60_09100 PF13508 Acetyltransferase (GNAT) domain HHJ60_09115 PF16916 Dimerisation domain of Zinc Transporter HHJ60_09115 PF01545 Cation efflux family HHJ60_09120 PF00376 MerR family regulatory protein HHJ60_09120 PF09278 MerR, DNA binding HHJ60_09135 PF12161 HsdM N-terminal domain HHJ60_09135 PF02384 N-6 DNA Methylase HHJ60_09150 PF07690 Major Facilitator Superfamily HHJ60_09155 PF00459 Inositol monophosphatase family HHJ60_09160 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HHJ60_09165 PF02874 ATP synthase alpha/beta family, beta-barrel domain HHJ60_09165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HHJ60_09170 PF00231 ATP synthase HHJ60_09175 PF02874 ATP synthase alpha/beta family, beta-barrel domain HHJ60_09175 PF00306 ATP synthase alpha/beta chain, C terminal domain HHJ60_09175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HHJ60_09180 PF00213 ATP synthase delta (OSCP) subunit HHJ60_09185 PF00430 ATP synthase B/B' CF(0) HHJ60_09190 PF00137 ATP synthase subunit C HHJ60_09195 PF00119 ATP synthase A chain HHJ60_09205 PF02527 rRNA small subunit methyltransferase G HHJ60_09210 PF13932 GidA associated domain HHJ60_09210 PF01134 Glucose inhibited division protein A HHJ60_09215 PF00258 Flavodoxin HHJ60_09220 PF06005 Cell division protein ZapB HHJ60_09225 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HHJ60_09230 PF00204 DNA gyrase B HHJ60_09230 PF00986 DNA gyrase B subunit, carboxyl terminus HHJ60_09230 PF18053 DNA gyrase B subunit insert domain HHJ60_09230 PF01751 Toprim domain HHJ60_09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ60_09235 PF00593 TonB dependent receptor HHJ60_09235 PF07715 TonB-dependent Receptor Plug Domain HHJ60_09240 PF00005 ABC transporter HHJ60_09240 PF00664 ABC transporter transmembrane region HHJ60_09245 PF00005 ABC transporter HHJ60_09245 PF00664 ABC transporter transmembrane region HHJ60_09250 PF00034 Cytochrome c HHJ60_09250 PF14376 Haem-binding domain HHJ60_09250 PF03150 Di-haem cytochrome c peroxidase HHJ60_09260 PF00209 Sodium:neurotransmitter symporter family HHJ60_09265 PF08501 Shikimate dehydrogenase substrate binding domain HHJ60_09265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HHJ60_09265 PF01488 Shikimate / quinate 5-dehydrogenase HHJ60_09270 PF01300 Telomere recombination HHJ60_09275 PF01396 Topoisomerase DNA binding C4 zinc finger HHJ60_09280 PF02545 Maf-like protein HHJ60_09285 PF02646 RmuC family HHJ60_09290 PF03350 Uncharacterized protein family, UPF0114 HHJ60_09295 PF04994 TfoX C-terminal domain HHJ60_09295 PF04993 TfoX N-terminal domain HHJ60_09325 PF00117 Glutamine amidotransferase class-I HHJ60_09325 PF06418 CTP synthase N-terminus HHJ60_09330 PF01926 50S ribosome-binding GTPase HHJ60_09335 PF12833 Helix-turn-helix domain HHJ60_09340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ60_09340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ60_09350 PF00155 Aminotransferase class I and II HHJ60_09355 PF03553 Na+/H+ antiporter family HHJ60_09360 PF00206 Lyase HHJ60_09360 PF08328 Adenylosuccinate lyase C-terminal HHJ60_09365 PF04356 Protein of unknown function (DUF489) HHJ60_09375 PF08220 DeoR-like helix-turn-helix domain HHJ60_09375 PF00455 DeoR C terminal sensor domain HHJ60_09380 PF06923 Glucitol operon activator protein (GutM) HHJ60_09385 PF00106 short chain dehydrogenase HHJ60_09390 PF03829 PTS system glucitol/sorbitol-specific IIA component HHJ60_09395 PF07663 Sorbitol phosphotransferase enzyme II C-terminus HHJ60_09395 PF03612 Sorbitol phosphotransferase enzyme II N-terminus HHJ60_09400 PF03608 PTS system enzyme II sorbitol-specific factor HHJ60_09405 PF00999 Sodium/hydrogen exchanger family HHJ60_09405 PF02254 TrkA-N domain HHJ60_09410 PF04452 RNA methyltransferase HHJ60_09415 PF02622 Uncharacterized ACR, COG1678 HHJ60_09420 PF03652 Holliday junction resolvase HHJ60_09425 PF02653 Branched-chain amino acid transport system / permease component HHJ60_09430 PF00005 ABC transporter HHJ60_09435 PF13407 Periplasmic binding protein domain HHJ60_09440 PF14815 NUDIX domain HHJ60_09440 PF00730 HhH-GPD superfamily base excision DNA repair protein HHJ60_09445 PF04362 Bacterial Fe(2+) trafficking HHJ60_09450 PF01464 Transglycosylase SLT domain HHJ60_09450 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HHJ60_09465 PF01544 CorA-like Mg2+ transporter protein HHJ60_09470 PF02325 YGGT family HHJ60_09475 PF02594 Uncharacterised ACR, YggU family COG1872 HHJ60_09480 PF18075 FtsX extracellular domain HHJ60_09485 PF00005 ABC transporter HHJ60_09490 PF02780 Transketolase, C-terminal domain HHJ60_09490 PF02779 Transketolase, pyrimidine binding domain HHJ60_09490 PF00456 Transketolase, thiamine diphosphate binding domain HHJ60_09495 PF00596 Class II Aldolase and Adducin N-terminal domain HHJ60_09500 PF01261 Xylose isomerase-like TIM barrel HHJ60_09505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ60_09505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ60_09510 PF03480 Bacterial extracellular solute-binding protein, family 7 HHJ60_09515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HHJ60_09520 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HHJ60_09525 PF04074 YhcH/YjgK/YiaL HHJ60_09530 PF02615 Malate/L-lactate dehydrogenase HHJ60_09535 PF09339 IclR helix-turn-helix domain HHJ60_09535 PF01614 Bacterial transcriptional regulator HHJ60_09540 PF02810 SEC-C motif HHJ60_09545 PF03631 Virulence factor BrkB HHJ60_09550 PF02580 D-Tyr-tRNA(Tyr) deacylase HHJ60_09555 PF00196 Bacterial regulatory proteins, luxR family HHJ60_09555 PF00072 Response regulator receiver domain HHJ60_09560 PF12633 Adenylate cyclase NT domain HHJ60_09560 PF01295 Adenylate cyclase, class-I HHJ60_09565 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HHJ60_09565 PF03900 Porphobilinogen deaminase, C-terminal domain HHJ60_09570 PF02602 Uroporphyrinogen-III synthase HemD HHJ60_09575 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HHJ60_09580 PF07219 HemY protein N-terminus HHJ60_09590 PF00202 Aminotransferase class-III HHJ60_09595 PF00282 Pyridoxal-dependent decarboxylase conserved domain HHJ60_09600 PF13335 Magnesium chelatase, subunit ChlI C-terminal HHJ60_09600 PF01078 Magnesium chelatase, subunit ChlI HHJ60_09605 PF02390 Putative methyltransferase HHJ60_09610 PF04320 Protein with unknown function (DUF469) HHJ60_09615 PF12390 Selenocysteine synthase N terminal HHJ60_09615 PF03841 L-seryl-tRNA selenium transferase HHJ60_09620 PF03144 Elongation factor Tu domain 2 HHJ60_09620 PF00009 Elongation factor Tu GTP binding domain HHJ60_09620 PF09106 Elongation factor SelB, winged helix HHJ60_09620 PF09107 Elongation factor SelB, winged helix HHJ60_09625 PF00849 RNA pseudouridylate synthase HHJ60_09625 PF01479 S4 domain HHJ60_09630 PF12111 Polyribonucleotide phosphorylase C terminal HHJ60_09630 PF10150 Ribonuclease E/G family HHJ60_09630 PF00575 S1 RNA binding domain HHJ60_09640 PF01678 Diaminopimelate epimerase HHJ60_09645 PF07724 AAA domain (Cdc48 subfamily) HHJ60_09645 PF00004 ATPase family associated with various cellular activities (AAA) HHJ60_09645 PF17871 AAA lid domain HHJ60_09645 PF02861 Clp amino terminal domain, pathogenicity island component HHJ60_09645 PF10431 C-terminal, D2-small domain, of ClpB protein HHJ60_09650 PF00378 Enoyl-CoA hydratase/isomerase HHJ60_09660 PF13378 Enolase C-terminal domain-like HHJ60_09665 PF01220 Dehydroquinase class II HHJ60_09670 PF00364 Biotin-requiring enzyme HHJ60_09675 PF02785 Biotin carboxylase C-terminal domain HHJ60_09675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HHJ60_09675 PF00289 Biotin carboxylase, N-terminal domain HHJ60_09680 PF06196 Protein of unknown function (DUF997) HHJ60_09685 PF00474 Sodium:solute symporter family HHJ60_09695 PF01207 Dihydrouridine synthase (Dus) HHJ60_09700 PF02954 Bacterial regulatory protein, Fis family HHJ60_09705 PF00180 Isocitrate/isopropylmalate dehydrogenase HHJ60_09710 PF00849 RNA pseudouridylate synthase HHJ60_09715 PF00293 NUDIX domain HHJ60_09720 PF07274 Protein of unknown function (DUF1440) HHJ60_09725 PF00923 Transaldolase/Fructose-6-phosphate aldolase HHJ60_09730 PF03352 Methyladenine glycosylase HHJ60_09735 PF04453 LPS transport system D HHJ60_09735 PF03968 OstA-like protein HHJ60_09740 PF03498 Cytolethal distending toxin A/C domain HHJ60_09745 PF03372 Endonuclease/Exonuclease/phosphatase family HHJ60_09750 PF03498 Cytolethal distending toxin A/C domain HHJ60_09755 PF01037 Lrp/AsnC ligand binding domain HHJ60_09755 PF13404 AsnC-type helix-turn-helix domain HHJ60_09760 PF03590 Aspartate-ammonia ligase HHJ60_09780 PF00291 Pyridoxal-phosphate dependent enzyme HHJ60_09780 PF00585 C-terminal regulatory domain of Threonine dehydratase HHJ60_09790 PF00920 Dehydratase family HHJ60_09800 PF00205 Thiamine pyrophosphate enzyme, central domain HHJ60_09800 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HHJ60_09800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HHJ60_09810 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HHJ60_09815 PF12146 Serine aminopeptidase, S33 HHJ60_09820 PF00440 Bacterial regulatory proteins, tetR family HHJ60_09825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_09825 PF03466 LysR substrate binding domain HHJ60_09830 PF00462 Glutaredoxin HHJ60_09830 PF08534 Redoxin HHJ60_09835 PF04102 SlyX HHJ60_09840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HHJ60_09840 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HHJ60_09845 PF08348 YheO-like PAS domain HHJ60_09845 PF13309 HTH domain HHJ60_09850 PF02635 DsrE/DsrF-like family HHJ60_09855 PF02635 DsrE/DsrF-like family HHJ60_09870 PF00164 Ribosomal protein S12/S23 HHJ60_09875 PF00177 Ribosomal protein S7p/S5e HHJ60_09880 PF03144 Elongation factor Tu domain 2 HHJ60_09880 PF00009 Elongation factor Tu GTP binding domain HHJ60_09880 PF03764 Elongation factor G, domain IV HHJ60_09880 PF14492 Elongation Factor G, domain II HHJ60_09880 PF00679 Elongation factor G C-terminus HHJ60_09885 PF00009 Elongation factor Tu GTP binding domain HHJ60_09885 PF03144 Elongation factor Tu domain 2 HHJ60_09885 PF03143 Elongation factor Tu C-terminal domain HHJ60_09890 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HHJ60_09895 PF00467 KOW motif HHJ60_09895 PF02357 Transcription termination factor nusG HHJ60_09915 PF03946 Ribosomal protein L11, N-terminal domain HHJ60_09915 PF00298 Ribosomal protein L11, RNA binding domain HHJ60_09920 PF00687 Ribosomal protein L1p/L10e family HHJ60_09925 PF00466 Ribosomal protein L10 HHJ60_09930 PF16320 Ribosomal protein L7/L12 dimerisation domain HHJ60_09930 PF00542 Ribosomal protein L7/L12 C-terminal domain HHJ60_09935 PF04560 RNA polymerase Rpb2, domain 7 HHJ60_09935 PF04561 RNA polymerase Rpb2, domain 2 HHJ60_09935 PF04565 RNA polymerase Rpb2, domain 3 HHJ60_09935 PF10385 RNA polymerase beta subunit external 1 domain HHJ60_09935 PF00562 RNA polymerase Rpb2, domain 6 HHJ60_09935 PF04563 RNA polymerase beta subunit HHJ60_09940 PF04998 RNA polymerase Rpb1, domain 5 HHJ60_09940 PF04997 RNA polymerase Rpb1, domain 1 HHJ60_09940 PF05000 RNA polymerase Rpb1, domain 4 HHJ60_09940 PF04983 RNA polymerase Rpb1, domain 3 HHJ60_09940 PF00623 RNA polymerase Rpb1, domain 2 HHJ60_09945 PF01184 GPR1/FUN34/yaaH family HHJ60_09950 PF00072 Response regulator receiver domain HHJ60_09950 PF00486 Transcriptional regulatory protein, C terminal HHJ60_09955 PF04355 SmpA / OmlA family HHJ60_09960 PF04245 37-kD nucleoid-associated bacterial protein HHJ60_09965 PF07208 Protein of unknown function (DUF1414) HHJ60_09970 PF00884 Sulfatase HHJ60_09970 PF11893 Domain of unknown function (DUF3413) HHJ60_09980 PF01207 Dihydrouridine synthase (Dus) HHJ60_09985 PF05099 Tellurite resistance protein TerB HHJ60_09985 PF00226 DnaJ domain HHJ60_09990 PF00156 Phosphoribosyl transferase domain HHJ60_09995 PF03725 3' exoribonuclease family, domain 2 HHJ60_09995 PF01138 3' exoribonuclease family, domain 1 HHJ60_10000 PF03755 YicC-like family, N-terminal region HHJ60_10000 PF08340 Domain of unknown function (DUF1732) HHJ60_10005 PF01571 Aminomethyltransferase folate-binding domain HHJ60_10010 PF12804 MobA-like NTP transferase domain HHJ60_10015 PF06288 Protein of unknown function (DUF1040) HHJ60_10020 PF01323 DSBA-like thioredoxin domain HHJ60_10025 PF04219 Protein of unknown function, DUF HHJ60_10030 PF05958 tRNA (Uracil-5-)-methyltransferase HHJ60_10035 PF04445 Putative SAM-dependent methyltransferase HHJ60_10040 PF04461 Protein of unknown function (DUF520) HHJ60_10045 PF18429 Domain of unknown function (DUF5609) HHJ60_10050 PF10144 Bacterial virulence factor haemolysin HHJ60_10055 PF01649 Ribosomal protein S20 HHJ60_10060 PF03023 Lipid II flippase MurJ HHJ60_10065 PF01103 Surface antigen HHJ60_10065 PF17243 POTRA domain TamA domain 1 HHJ60_10070 PF04357 TamB, inner membrane protein subunit of TAM complex HHJ60_10075 PF02541 Ppx/GppA phosphatase family HHJ60_10080 PF00924 Mechanosensitive ion channel HHJ60_10080 PF05552 Conserved TM helix HHJ60_10085 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ60_10085 PF12804 MobA-like NTP transferase domain HHJ60_10095 PF01925 Sulfite exporter TauE/SafE HHJ60_10100 PF03702 Anhydro-N-acetylmuramic acid kinase HHJ60_10110 PF00849 RNA pseudouridylate synthase HHJ60_10110 PF01479 S4 domain HHJ60_10115 PF13525 Outer membrane lipoprotein HHJ60_10120 PF05872 Bacterial protein of unknown function (DUF853) HHJ60_10125 PF04393 Protein of unknown function (DUF535) HHJ60_10130 PF12762 ISXO2-like transposase domain HHJ60_10135 PF00909 Ammonium Transporter Family HHJ60_10135 PF00909 Ammonium Transporter Family HHJ60_10140 PF00543 Nitrogen regulatory protein P-II HHJ60_10145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HHJ60_10145 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HHJ60_10145 PF02142 MGS-like domain HHJ60_10150 PF02567 Phenazine biosynthesis-like protein HHJ60_10155 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HHJ60_10155 PF00117 Glutamine amidotransferase class-I HHJ60_10160 PF04333 MlaA lipoprotein HHJ60_10165 PF03887 YfbU domain HHJ60_10170 PF02774 Semialdehyde dehydrogenase, dimerisation domain HHJ60_10170 PF01118 Semialdehyde dehydrogenase, NAD binding domain HHJ60_10175 PF00271 Helicase conserved C-terminal domain HHJ60_10175 PF00270 DEAD/DEAH box helicase HHJ60_10180 PF05175 Methyltransferase small domain HHJ60_10185 PF04261 Dyp-type peroxidase family HHJ60_10190 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HHJ60_10195 PF00459 Inositol monophosphatase family HHJ60_10200 PF00588 SpoU rRNA Methylase family HHJ60_10205 PF02082 Transcriptional regulator HHJ60_10210 PF00266 Aminotransferase class-V HHJ60_10215 PF01592 NifU-like N terminal domain HHJ60_10220 PF01521 Iron-sulphur cluster biosynthesis HHJ60_10225 PF07743 HSCB C-terminal oligomerisation domain HHJ60_10230 PF07743 HSCB C-terminal oligomerisation domain HHJ60_10235 PF00012 Hsp70 protein HHJ60_10240 PF00111 2Fe-2S iron-sulfur cluster binding domain HHJ60_10245 PF18419 ATP-grasp-like domain HHJ60_10245 PF04262 Glutamate-cysteine ligase HHJ60_10245 PF02655 ATP-grasp domain HHJ60_10255 PF03613 PTS system mannose/fructose/sorbose family IID component HHJ60_10260 PF03609 PTS system sorbose-specific iic component HHJ60_10265 PF03610 PTS system fructose IIA component HHJ60_10265 PF03830 PTS system sorbose subfamily IIB component HHJ60_10275 PF00535 Glycosyl transferase family 2 HHJ60_10280 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HHJ60_10285 PF00886 Ribosomal protein S16 HHJ60_10290 PF01782 RimM N-terminal domain HHJ60_10290 PF05239 PRC-barrel domain HHJ60_10295 PF01746 tRNA (Guanine-1)-methyltransferase HHJ60_10300 PF01245 Ribosomal protein L19 HHJ60_10305 PF00884 Sulfatase HHJ60_10310 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HHJ60_10310 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HHJ60_10315 PF01515 Phosphate acetyl/butaryl transferase HHJ60_10315 PF03949 Malic enzyme, NAD binding domain HHJ60_10315 PF00390 Malic enzyme, N-terminal domain HHJ60_10320 PF00849 RNA pseudouridylate synthase HHJ60_10320 PF01479 S4 domain HHJ60_10325 PF07690 Major Facilitator Superfamily HHJ60_10330 PF00376 MerR family regulatory protein HHJ60_10330 PF09278 MerR, DNA binding HHJ60_10335 PF00884 Sulfatase HHJ60_10335 PF08019 Phosphoethanolamine transferase EptA/EptB HHJ60_10340 PF08501 Shikimate dehydrogenase substrate binding domain HHJ60_10345 PF00132 Bacterial transferase hexapeptide (six repeats) HHJ60_10345 PF06426 Serine acetyltransferase, N-terminal HHJ60_10350 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HHJ60_10350 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HHJ60_10355 PF02556 Preprotein translocase subunit SecB HHJ60_10360 PF00581 Rhodanese-like domain HHJ60_10365 PF03605 Anaerobic c4-dicarboxylate membrane transporter HHJ60_10370 PF00881 Nitroreductase family HHJ60_10380 PF13091 PLD-like domain HHJ60_10385 PF08032 RNA 2'-O ribose methyltransferase substrate binding HHJ60_10385 PF00588 SpoU rRNA Methylase family HHJ60_10390 PF00037 4Fe-4S binding domain HHJ60_10395 PF00445 Ribonuclease T2 family HHJ60_10400 PF00162 Phosphoglycerate kinase HHJ60_10405 PF01116 Fructose-bisphosphate aldolase class-II HHJ60_10415 PF00294 pfkB family carbohydrate kinase HHJ60_10420 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ60_10425 PF13784 Fic/DOC family N-terminal HHJ60_10425 PF02661 Fic/DOC family HHJ60_10430 PF00551 Formyl transferase HHJ60_10430 PF02911 Formyl transferase, C-terminal domain HHJ60_10435 PF01029 NusB family HHJ60_10435 PF01189 16S rRNA methyltransferase RsmB/F HHJ60_10440 PF02080 TrkA-C domain HHJ60_10440 PF02254 TrkA-N domain HHJ60_10445 PF06877 Regulator of ribonuclease activity B HHJ60_10455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HHJ60_10460 PF00270 DEAD/DEAH box helicase HHJ60_10460 PF00271 Helicase conserved C-terminal domain HHJ60_10460 PF03880 DbpA RNA binding domain HHJ60_10470 PF03725 3' exoribonuclease family, domain 2 HHJ60_10470 PF01138 3' exoribonuclease family, domain 1 HHJ60_10470 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HHJ60_10470 PF00013 KH domain HHJ60_10470 PF00575 S1 RNA binding domain HHJ60_10475 PF03264 NapC/NirT cytochrome c family, N-terminal region HHJ60_10480 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HHJ60_10485 PF12837 4Fe-4S binding domain HHJ60_10485 PF12801 4Fe-4S binding domain HHJ60_10490 PF12838 4Fe-4S dicluster domain HHJ60_10490 PF12800 4Fe-4S binding domain HHJ60_10495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HHJ60_10495 PF10518 TAT (twin-arginine translocation) pathway signal sequence HHJ60_10495 PF00384 Molybdopterin oxidoreductase HHJ60_10495 PF01568 Molydopterin dinucleotide binding domain HHJ60_10500 PF03927 NapD protein HHJ60_10505 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HHJ60_10505 PF07730 Histidine kinase HHJ60_10505 PF00672 HAMP domain HHJ60_10505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HHJ60_10510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HHJ60_10510 PF01565 FAD binding domain HHJ60_10520 PF04545 Sigma-70, region 4 HHJ60_10520 PF04542 Sigma-70 region 2 HHJ60_10520 PF00140 Sigma-70 factor, region 1.2 HHJ60_10525 PF01521 Iron-sulphur cluster biosynthesis HHJ60_10525 PF01106 NifU-like domain HHJ60_10530 PF00156 Phosphoribosyl transferase domain HHJ60_10535 PF04748 Divergent polysaccharide deacetylase HHJ60_10540 PF01551 Peptidase family M23 HHJ60_10545 PF00300 Histidine phosphatase superfamily (branch 1) HHJ60_10550 PF01206 Sulfurtransferase TusA HHJ60_10555 PF01205 Uncharacterized protein family UPF0029 HHJ60_10555 PF09186 Domain of unknown function (DUF1949) HHJ60_10560 PF02386 Cation transport protein HHJ60_10565 PF12724 Flavodoxin domain HHJ60_10590 PF00238 Ribosomal protein L14p/L23e HHJ60_10595 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HHJ60_10595 PF00467 KOW motif HHJ60_10600 PF00673 ribosomal L5P family C-terminus HHJ60_10600 PF00281 Ribosomal protein L5 HHJ60_10605 PF00253 Ribosomal protein S14p/S29e HHJ60_10610 PF00410 Ribosomal protein S8 HHJ60_10615 PF00347 Ribosomal protein L6 HHJ60_10620 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HHJ60_10625 PF00333 Ribosomal protein S5, N-terminal domain HHJ60_10625 PF03719 Ribosomal protein S5, C-terminal domain HHJ60_10630 PF00327 Ribosomal protein L30p/L7e HHJ60_10635 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HHJ60_10640 PF00344 SecY translocase HHJ60_10645 PF00444 Ribosomal protein L36 HHJ60_10650 PF00416 Ribosomal protein S13/S18 HHJ60_10655 PF00411 Ribosomal protein S11 HHJ60_10660 PF00163 Ribosomal protein S4/S9 N-terminal domain HHJ60_10660 PF01479 S4 domain HHJ60_10665 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HHJ60_10665 PF01000 RNA polymerase Rpb3/RpoA insert domain HHJ60_10665 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HHJ60_10670 PF01196 Ribosomal protein L17 HHJ60_10675 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HHJ60_10680 PF04380 Membrane fusogenic activity HHJ60_10685 PF13521 AAA domain HHJ60_10685 PF01467 Cytidylyltransferase-like HHJ60_10690 PF00149 Calcineurin-like phosphoesterase HHJ60_10700 PF00589 Phage integrase family HHJ60_10700 PF13356 Arm DNA-binding domain HHJ60_10780 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HHJ60_10780 PF11867 Domain of unknown function (DUF3387) HHJ60_10780 PF18766 SWI2/SNF2 ATPase HHJ60_10795 PF01420 Type I restriction modification DNA specificity domain HHJ60_10805 PF03923 Uncharacterized lipoprotein HHJ60_10810 PF01722 BolA-like protein HHJ60_10815 PF11973 NQRA C-terminal domain HHJ60_10815 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HHJ60_10820 PF03116 NQR2, RnfD, RnfE family HHJ60_10825 PF04205 FMN-binding domain HHJ60_10830 PF02508 Rnf-Nqr subunit, membrane protein HHJ60_10835 PF02508 Rnf-Nqr subunit, membrane protein HHJ60_10840 PF00970 Oxidoreductase FAD-binding domain HHJ60_10840 PF00175 Oxidoreductase NAD-binding domain HHJ60_10840 PF00111 2Fe-2S iron-sulfur cluster binding domain HHJ60_10845 PF02424 ApbE family HHJ60_10850 PF04400 (Na+)-NQR maturation NqrM HHJ60_10860 PF00534 Glycosyl transferases group 1 HHJ60_10860 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HHJ60_10865 PF01467 Cytidylyltransferase-like HHJ60_10870 PF03616 Sodium/glutamate symporter HHJ60_10875 PF00485 Phosphoribulokinase / Uridine kinase family HHJ60_10900 PF00009 Elongation factor Tu GTP binding domain HHJ60_10900 PF03144 Elongation factor Tu domain 2 HHJ60_10900 PF03143 Elongation factor Tu C-terminal domain HHJ60_10905 PF09297 NADH pyrophosphatase zinc ribbon domain HHJ60_10905 PF00293 NUDIX domain HHJ60_10910 PF01208 Uroporphyrinogen decarboxylase (URO-D) HHJ60_10915 PF04222 Protein of unknown function (DUF416) HHJ60_10920 PF00216 Bacterial DNA-binding protein HHJ60_10925 PF08220 DeoR-like helix-turn-helix domain HHJ60_10925 PF00455 DeoR C terminal sensor domain HHJ60_10930 PF01380 SIS domain HHJ60_10945 PF01243 Pyridoxamine 5'-phosphate oxidase HHJ60_10945 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HHJ60_10950 PF07690 Major Facilitator Superfamily HHJ60_10955 PF03205 Molybdopterin guanine dinucleotide synthesis protein B HHJ60_10965 PF17188 MucB/RseB C-terminal domain HHJ60_10965 PF03888 MucB/RseB N-terminal domain HHJ60_10970 PF03872 Anti sigma-E protein RseA, N-terminal domain HHJ60_10970 PF03873 Anti sigma-E protein RseA, C-terminal domain HHJ60_10975 PF04542 Sigma-70 region 2 HHJ60_10975 PF08281 Sigma-70, region 4 HHJ60_10980 PF03937 Flavinator of succinate dehydrogenase HHJ60_10990 PF13649 Methyltransferase domain HHJ60_11005 PF07669 Eco57I restriction-modification methylase HHJ60_11010 PF04851 Type III restriction enzyme, res subunit HHJ60_11015 PF18693 TRAM domain HHJ60_11015 PF04055 Radical SAM superfamily HHJ60_11015 PF00919 Uncharacterized protein family UPF0004 HHJ60_11020 PF01451 Low molecular weight phosphotyrosine protein phosphatase HHJ60_11025 PF07992 Pyridine nucleotide-disulphide oxidoreductase HHJ60_11025 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HHJ60_11030 PF04898 Glutamate synthase central domain HHJ60_11030 PF01645 Conserved region in glutamate synthase HHJ60_11030 PF01493 GXGXG motif HHJ60_11030 PF00310 Glutamine amidotransferases class-II HHJ60_11040 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HHJ60_11045 PF00005 ABC transporter HHJ60_11045 PF00664 ABC transporter transmembrane region HHJ60_11050 PF05190 MutS family domain IV HHJ60_11050 PF01624 MutS domain I HHJ60_11050 PF00488 MutS domain V HHJ60_11050 PF05188 MutS domain II HHJ60_11050 PF05192 MutS domain III HHJ60_11055 PF00696 Amino acid kinase family HHJ60_11065 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HHJ60_11075 PF06545 Protein of unknown function (DUF1116) HHJ60_11080 PF00549 CoA-ligase HHJ60_11080 PF02629 CoA binding domain HHJ60_11085 PF00857 Isochorismatase family HHJ60_11090 PF03466 LysR substrate binding domain HHJ60_11090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_11100 PF06545 Protein of unknown function (DUF1116) HHJ60_11105 PF02629 CoA binding domain HHJ60_11105 PF00549 CoA-ligase HHJ60_11110 PF12796 Ankyrin repeats (3 copies) HHJ60_11115 PF03466 LysR substrate binding domain HHJ60_11115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HHJ60_11120 PF00154 recA bacterial DNA recombination protein HHJ60_11125 PF02631 RecX family HHJ60_11130 PF01797 Transposase IS200 like HHJ60_11135 PF07282 Putative transposase DNA-binding domain HHJ60_11135 PF12323 Helix-turn-helix domain HHJ60_11135 PF01385 Probable transposase HHJ60_11140 PF03129 Anticodon binding domain HHJ60_11140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HHJ60_11140 PF04073 Aminoacyl-tRNA editing domain HHJ60_11145 PF00005 ABC transporter HHJ60_11150 PF00528 Binding-protein-dependent transport system inner membrane component HHJ60_11155 PF00497 Bacterial extracellular solute-binding proteins, family 3 HHJ60_11160 PF06969 HemN C-terminal domain HHJ60_11160 PF04055 Radical SAM superfamily HHJ60_11165 PF10675 Protein of unknown function (DUF2489) HHJ60_11170 PF04220 Der GTPase activator (YihI) HHJ60_11175 PF00849 RNA pseudouridylate synthase HHJ60_11180 PF18337 RapA N-terminal Tudor like domain HHJ60_11180 PF12137 RNA polymerase recycling family C-terminal HHJ60_11180 PF00176 SNF2 family N-terminal domain HHJ60_11180 PF18339 RapA N-terminal Tudor like domain 1 HHJ60_11180 PF00271 Helicase conserved C-terminal domain HHJ60_11185 PF04973 Nicotinamide mononucleotide transporter HHJ60_11190 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HHJ60_11190 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HHJ60_11195 PF12762 ISXO2-like transposase domain HHJ60_11200 PF00171 Aldehyde dehydrogenase family HHJ60_11205 PF04962 KduI/IolB family HHJ60_11210 PF00480 ROK family HHJ60_11210 PF01047 MarR family HHJ60_11215 PF00121 Triosephosphate isomerase HHJ60_11235 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HHJ60_11235 PF02278 Polysaccharide lyase family 8, super-sandwich domain HHJ60_11235 PF09092 Lyase, N terminal HHJ60_11235 PF09093 Lyase, catalytic HHJ60_11250 PF07690 Major Facilitator Superfamily HHJ60_11255 PF00596 Class II Aldolase and Adducin N-terminal domain HHJ60_11260 PF05025 RbsD / FucU transport protein family HHJ60_11265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ60_11265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ60_11270 PF07882 L-fucose isomerase, second N-terminal domain HHJ60_11270 PF07881 L-fucose isomerase, first N-terminal domain HHJ60_11270 PF02952 L-fucose isomerase, C-terminal domain HHJ60_11275 PF08220 DeoR-like helix-turn-helix domain HHJ60_11275 PF00455 DeoR C terminal sensor domain HHJ60_11280 PF01791 DeoC/LacD family aldolase HHJ60_11285 PF01370 NAD dependent epimerase/dehydratase family HHJ60_11300 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HHJ60_11305 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HHJ60_11310 PF13580 SIS domain HHJ60_11315 PF00265 Thymidine kinase HHJ60_11325 PF00814 Glycoprotease family HHJ60_11330 PF01165 Ribosomal protein S21 HHJ60_11335 PF08275 DNA primase catalytic core, N-terminal domain HHJ60_11335 PF08278 DNA primase DnaG DnaB-binding HHJ60_11335 PF10410 DnaB-helicase binding domain of primase HHJ60_11335 PF01807 CHC2 zinc finger HHJ60_11340 PF04545 Sigma-70, region 4 HHJ60_11340 PF04546 Sigma-70, non-essential region HHJ60_11340 PF03979 Sigma-70 factor, region 1.1 HHJ60_11340 PF00140 Sigma-70 factor, region 1.2 HHJ60_11340 PF04542 Sigma-70 region 2 HHJ60_11340 PF04539 Sigma-70 region 3 HHJ60_11355 PF04175 Protein of unknown function (DUF406) HHJ60_11360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HHJ60_11360 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HHJ60_11365 PF01909 Nucleotidyltransferase domain HHJ60_11370 PF08780 Nucleotidyltransferase substrate binding protein like HHJ60_11375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HHJ60_11380 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HHJ60_11380 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HHJ60_11385 PF00459 Inositol monophosphatase family HHJ60_11390 PF03169 OPT oligopeptide transporter protein HHJ60_11395 PF01479 S4 domain HHJ60_11400 PF01430 Hsp33 protein HHJ60_11405 PF00356 Bacterial regulatory proteins, lacI family HHJ60_11415 PF00107 Zinc-binding dehydrogenase HHJ60_11415 PF08240 Alcohol dehydrogenase GroES-like domain HHJ60_11420 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HHJ60_11420 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HHJ60_11425 PF00005 ABC transporter HHJ60_11430 PF02653 Branched-chain amino acid transport system / permease component HHJ60_11435 PF13407 Periplasmic binding protein domain HHJ60_11440 PF01293 Phosphoenolpyruvate carboxykinase HHJ60_11445 PF01340 Met Apo-repressor, MetJ HHJ60_11450 PF00338 Ribosomal protein S10p/S20e HHJ60_11455 PF00297 Ribosomal protein L3 HHJ60_11460 PF00573 Ribosomal protein L4/L1 family HHJ60_11465 PF00276 Ribosomal protein L23 HHJ60_11470 PF03947 Ribosomal Proteins L2, C-terminal domain HHJ60_11470 PF00181 Ribosomal Proteins L2, RNA binding domain HHJ60_11475 PF00203 Ribosomal protein S19 HHJ60_11480 PF00237 Ribosomal protein L22p/L17e HHJ60_11485 PF07650 KH domain HHJ60_11485 PF00189 Ribosomal protein S3, C-terminal domain HHJ60_11490 PF00252 Ribosomal protein L16p/L10e HHJ60_11495 PF00831 Ribosomal L29 protein HHJ60_11500 PF00366 Ribosomal protein S17 HHJ60_11510 PF00589 Phage integrase family HHJ60_11510 PF14659 Phage integrase, N-terminal SAM-like domain HHJ60_11510 PF13356 Arm DNA-binding domain HHJ60_11600 PF03592 Terminase small subunit HHJ60_11670 PF14849 YidC periplasmic domain HHJ60_11670 PF02096 60Kd inner membrane protein HHJ60_11675 PF01809 Putative membrane protein insertion efficiency factor HHJ60_11680 PF00825 Ribonuclease P HHJ60_11685 PF00468 Ribosomal protein L34