locus-tag class description VY92_000005 PF01809 Putative membrane protein insertion efficiency factor VY92_000010 PF00825 Ribonuclease P VY92_000015 PF00468 Ribosomal protein L34 VY92_000020 PF00308 Bacterial dnaA protein VY92_000020 PF08299 Bacterial dnaA protein helix-turn-helix VY92_000020 PF11638 DnaA N-terminal domain VY92_000025 PF02767 DNA polymerase III beta subunit, central domain VY92_000025 PF00712 DNA polymerase III beta subunit, N-terminal domain VY92_000025 PF02768 DNA polymerase III beta subunit, C-terminal domain VY92_000030 PF02463 RecF/RecN/SMC N terminal domain VY92_000035 PF02592 Putative vitamin uptake transporter VY92_000040 PF11967 Recombination protein O N terminal VY92_000040 PF02565 Recombination protein O C terminal VY92_000045 PF05958 tRNA (Uracil-5-)-methyltransferase VY92_000045 PF01938 TRAM domain VY92_000050 PF02824 TGS domain VY92_000050 PF13291 ACT domain VY92_000050 PF04607 Region found in RelA / SpoT proteins VY92_000055 PF01219 Prokaryotic diacylglycerol kinase VY92_000060 PF00710 Asparaginase, N-terminal VY92_000060 PF17763 Glutaminase/Asparaginase C-terminal domain VY92_000070 PF02152 Dihydroneopterin aldolase VY92_000075 PF02660 Glycerol-3-phosphate acyltransferase VY92_000080 PF01327 Polypeptide deformylase VY92_000085 PF17358 Family of unknown function (DUF5384) VY92_000090 PF05433 Glycine zipper 2TM domain VY92_000095 PF00205 Thiamine pyrophosphate enzyme, central domain VY92_000095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VY92_000095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VY92_000100 PF01261 Xylose isomerase-like TIM barrel VY92_000105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VY92_000105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VY92_000110 PF02678 Pirin VY92_000110 PF05726 Pirin C-terminal cupin domain VY92_000115 PF03358 NADPH-dependent FMN reductase VY92_000120 PF02769 AIR synthase related protein, C-terminal domain VY92_000120 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VY92_000120 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VY92_000125 PF00696 Amino acid kinase family VY92_000125 PF01472 PUA domain VY92_000130 PF00535 Glycosyl transferase family 2 VY92_000135 PF04932 O-Antigen ligase VY92_000140 PF09976 Tetratricopeptide repeat-like domain VY92_000145 PF03129 Anticodon binding domain VY92_000145 PF13393 Histidyl-tRNA synthetase VY92_000150 PF04551 GcpE protein VY92_000155 PF13464 Domain of unknown function (DUF4115) VY92_000160 PF03600 Citrate transporter VY92_000160 PF02080 TrkA-C domain VY92_000165 PF01066 CDP-alcohol phosphatidyltransferase VY92_000180 PF00994 Probable molybdopterin binding domain VY92_000185 PF00543 Nitrogen regulatory protein P-II VY92_000190 PF01594 AI-2E family transporter VY92_000195 PF04055 Radical SAM superfamily VY92_000205 PF02481 DNA recombination-mediator protein A VY92_000205 PF17782 DprA winged helix domain VY92_000215 PF00448 SRP54-type protein, GTPase domain VY92_000215 PF02881 SRP54-type protein, helical bundle domain VY92_000220 PF03009 Glycerophosphoryl diester phosphodiesterase family VY92_000225 PF07690 Major Facilitator Superfamily VY92_000230 PF01266 FAD dependent oxidoreductase VY92_000230 PF04324 BFD-like [2Fe-2S] binding domain VY92_000235 PF00890 FAD binding domain VY92_000240 PF02754 Cysteine-rich domain VY92_000240 PF13183 4Fe-4S dicluster domain VY92_000245 PF08220 DeoR-like helix-turn-helix domain VY92_000245 PF00455 DeoR C terminal sensor domain VY92_000250 PF01694 Rhomboid family VY92_000255 PF17364 Family of unknown function (DUF5389) VY92_000260 PF02222 ATP-grasp domain VY92_000260 PF01370 NAD dependent epimerase/dehydratase family VY92_000265 PF00579 tRNA synthetases class I (W and Y) VY92_000270 PF13419 Haloacid dehalogenase-like hydrolase VY92_000275 PF00834 Ribulose-phosphate 3 epimerase family VY92_000280 PF01810 LysE type translocator VY92_000285 PF01042 Endoribonuclease L-PSP VY92_000305 PF01063 Amino-transferase class IV VY92_000310 PF00425 chorismate binding enzyme VY92_000315 PF00117 Glutamine amidotransferase class-I VY92_000320 PF00210 Ferritin-like domain VY92_000330 PF01926 50S ribosome-binding GTPase VY92_000330 PF12631 MnmE helical domain VY92_000330 PF10396 GTP-binding protein TrmE N-terminus VY92_000335 PF06574 FAD synthetase VY92_000335 PF01687 Riboflavin kinase VY92_000340 PF08264 Anticodon-binding domain of tRNA VY92_000340 PF00133 tRNA synthetases class I (I, L, M and V) VY92_000345 PF01252 Signal peptidase (SPase) II VY92_000350 PF02401 LytB protein VY92_000360 PF00072 Response regulator receiver domain VY92_000360 PF00486 Transcriptional regulatory protein, C terminal VY92_000365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VY92_000365 PF08521 Two-component sensor kinase N-terminal VY92_000365 PF00512 His Kinase A (phospho-acceptor) domain VY92_000380 PF00206 Lyase VY92_000380 PF14698 Argininosuccinate lyase C-terminal VY92_000385 PF00696 Amino acid kinase family VY92_000395 PF07687 Peptidase dimerisation domain VY92_000395 PF01546 Peptidase family M20/M25/M40 VY92_000470 PF01051 Initiator Replication protein VY92_000500 PF10876 Phage tail assemb.y chaperone protein, TAC VY92_000545 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) VY92_000555 PF04233 Phage Mu protein F like protein VY92_000560 PF06381 Protein of unknown function (DUF1073) VY92_000565 PF04466 Phage terminase large subunit VY92_000565 PF17288 Terminase RNAseH like domain VY92_000570 PF03592 Terminase small subunit VY92_000595 PF05106 Phage holin family (Lysis protein S) VY92_000620 PF02498 BRO family, N-terminal domain VY92_000620 PF10548 P22AR C-terminal domain VY92_000625 PF05772 NinB protein VY92_000660 PF00717 Peptidase S24-like VY92_000660 PF01726 LexA DNA binding domain VY92_000675 PF07411 Domain of unknown function (DUF1508) VY92_000730 PF02498 BRO family, N-terminal domain VY92_000730 PF10548 P22AR C-terminal domain VY92_000735 PF05772 NinB protein VY92_000785 PF05106 Phage holin family (Lysis protein S) VY92_000810 PF03592 Terminase small subunit VY92_000815 PF04466 Phage terminase large subunit VY92_000815 PF17288 Terminase RNAseH like domain VY92_001130 PF05840 Bacteriophage replication gene A protein (GPA) VY92_001170 PF00589 Phage integrase family VY92_001170 PF02899 Phage integrase, N-terminal SAM-like domain VY92_001175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VY92_001180 PF06508 Queuosine biosynthesis protein QueC VY92_001185 PF01242 6-pyruvoyl tetrahydropterin synthase VY92_001190 PF04055 Radical SAM superfamily VY92_001200 PF00005 ABC transporter VY92_001205 PF01061 ABC-2 type transporter VY92_001215 PF02563 Polysaccharide biosynthesis/export protein VY92_001220 PF00535 Glycosyl transferase family 2 VY92_001225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VY92_001225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VY92_001225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VY92_001240 PF00535 Glycosyl transferase family 2 VY92_001250 PF05159 Capsule polysaccharide biosynthesis protein VY92_001255 PF05159 Capsule polysaccharide biosynthesis protein VY92_001265 PF01068 ATP dependent DNA ligase domain VY92_001265 PF14743 DNA ligase OB-like domain VY92_001270 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VY92_001275 PF01979 Amidohydrolase family VY92_001280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VY92_001285 PF00303 Thymidylate synthase VY92_001290 PF01790 Prolipoprotein diacylglyceryl transferase VY92_001295 PF01925 Sulfite exporter TauE/SafE VY92_001300 PF00293 NUDIX domain VY92_001310 PF01510 N-acetylmuramoyl-L-alanine amidase VY92_001315 PF07963 Prokaryotic N-terminal methylation motif VY92_001320 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VY92_001320 PF00437 Type II/IV secretion system protein VY92_001325 PF00696 Amino acid kinase family VY92_001330 PF01765 Ribosome recycling factor VY92_001335 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VY92_001335 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VY92_001335 PF13288 DXP reductoisomerase C-terminal domain VY92_001340 PF01255 Putative undecaprenyl diphosphate synthase VY92_001350 PF02163 Peptidase family M50 VY92_001355 PF01103 Surface antigen VY92_001355 PF07244 Surface antigen variable number repeat VY92_001360 PF03938 Outer membrane protein (OmpH-like) VY92_001365 PF00132 Bacterial transferase hexapeptide (six repeats) VY92_001365 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VY92_001370 PF07977 FabA-like domain VY92_001375 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VY92_001375 PF00132 Bacterial transferase hexapeptide (six repeats) VY92_001380 PF02684 Lipid-A-disaccharide synthetase VY92_001385 PF01351 Ribonuclease HII VY92_001395 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VY92_001395 PF06144 DNA polymerase III, delta subunit VY92_001400 PF04390 Lipopolysaccharide-assembly VY92_001405 PF13603 Leucyl-tRNA synthetase, Domain 2 VY92_001405 PF08264 Anticodon-binding domain of tRNA VY92_001405 PF00133 tRNA synthetases class I (I, L, M and V) VY92_001410 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) VY92_001415 PF00149 Calcineurin-like phosphoesterase VY92_001420 PF00398 Ribosomal RNA adenine dimethylase VY92_001425 PF00639 PPIC-type PPIASE domain VY92_001425 PF09312 SurA N-terminal domain VY92_001430 PF00156 Phosphoribosyl transferase domain VY92_001435 PF00551 Formyl transferase VY92_001440 PF02769 AIR synthase related protein, C-terminal domain VY92_001440 PF00586 AIR synthase related protein, N-terminal domain VY92_001465 PF00929 Exonuclease VY92_001470 PF00075 RNase H VY92_001475 PF01238 Phosphomannose isomerase type I VY92_001480 PF06173 Protein of unknown function (DUF986) VY92_001485 PF03613 PTS system mannose/fructose/sorbose family IID component VY92_001490 PF03609 PTS system sorbose-specific iic component VY92_001495 PF03610 PTS system fructose IIA component VY92_001495 PF03830 PTS system sorbose subfamily IIB component VY92_001500 PF00482 Type II secretion system (T2SS), protein F VY92_001510 PF01121 Dephospho-CoA kinase VY92_001520 PF01235 Sodium:alanine symporter family VY92_001525 PF02627 Carboxymuconolactone decarboxylase family VY92_001530 PF12833 Helix-turn-helix domain VY92_001530 PF02311 AraC-like ligand binding domain VY92_001535 PF10063 Uncharacterized integral membrane protein (DUF2301) VY92_001540 PF08468 Methyltransferase small domain N-terminal VY92_001540 PF05175 Methyltransferase small domain VY92_001545 PF00005 ABC transporter VY92_001545 PF06472 ABC transporter transmembrane region 2 VY92_001550 PF02080 TrkA-C domain VY92_001550 PF06826 Predicted Permease Membrane Region VY92_001555 PF02462 Opacity family porin protein VY92_001560 PF01553 Acyltransferase VY92_001565 PF00717 Peptidase S24-like VY92_001565 PF01726 LexA DNA binding domain VY92_001570 PF00171 Aldehyde dehydrogenase family VY92_001570 PF00465 Iron-containing alcohol dehydrogenase VY92_001575 PF00578 AhpC/TSA family VY92_001580 PF00701 Dihydrodipicolinate synthetase family VY92_001585 PF06804 NlpB/DapX lipoprotein VY92_001590 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VY92_001595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VY92_001595 PF07992 Pyridine nucleotide-disulphide oxidoreductase VY92_001600 PF02190 ATP-dependent protease La (LON) substrate-binding domain VY92_001600 PF00004 ATPase family associated with various cellular activities (AAA) VY92_001600 PF05362 Lon protease (S16) C-terminal proteolytic domain VY92_001605 PF13145 PPIC-type PPIASE domain VY92_001610 PF00318 Ribosomal protein S2 VY92_001615 PF00889 Elongation factor TS VY92_001620 PF00009 Elongation factor Tu GTP binding domain VY92_001620 PF16658 Class II release factor RF3, C-terminal domain VY92_001620 PF03144 Elongation factor Tu domain 2 VY92_001625 PF01259 SAICAR synthetase VY92_001640 PF01370 NAD dependent epimerase/dehydratase family VY92_001645 PF00764 Arginosuccinate synthase VY92_001650 PF04393 Protein of unknown function (DUF535) VY92_001655 PF00675 Insulinase (Peptidase family M16) VY92_001655 PF05193 Peptidase M16 inactive domain VY92_001660 PF07715 TonB-dependent Receptor Plug Domain VY92_001665 PF02224 Cytidylate kinase VY92_001670 PF00575 S1 RNA binding domain VY92_001675 PF00216 Bacterial DNA-binding protein VY92_001680 PF06305 Lipopolysaccharide assembly protein A domain VY92_001685 PF18073 Rubredoxin metal binding domain VY92_001690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VY92_001695 PF01253 Translation initiation factor SUI1 VY92_001700 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VY92_001700 PF14572 Phosphoribosyl synthetase-associated domain VY92_001705 PF00288 GHMP kinases N terminal domain VY92_001705 PF08544 GHMP kinases C terminal VY92_001710 PF03550 Outer membrane lipoprotein LolB VY92_001715 PF00486 Transcriptional regulatory protein, C terminal VY92_001715 PF00072 Response regulator receiver domain VY92_001720 PF00464 Serine hydroxymethyltransferase VY92_001725 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VY92_001725 PF02843 Phosphoribosylglycinamide synthetase, C domain VY92_001725 PF02844 Phosphoribosylglycinamide synthetase, N domain VY92_001735 PF01808 AICARFT/IMPCHase bienzyme VY92_001735 PF02142 MGS-like domain VY92_001740 PF07681 DoxX VY92_001745 PF05662 Coiled stalk of trimeric autotransporter adhesin VY92_001745 PF05658 Head domain of trimeric autotransporter adhesin VY92_001745 PF03895 YadA-like membrane anchor domain VY92_001745 PF13018 Extended Signal Peptide of Type V secretion system VY92_001750 PF02683 Cytochrome C biogenesis protein transmembrane region VY92_001750 PF00085 Thioredoxin VY92_001750 PF11412 Disulphide bond corrector protein DsbC VY92_001755 PF01197 Ribosomal protein L31 VY92_001760 PF00444 Ribosomal protein L36 VY92_001765 PF00005 ABC transporter VY92_001770 PF00005 ABC transporter VY92_001770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VY92_001775 PF12911 N-terminal TM domain of oligopeptide transport permease C VY92_001775 PF00528 Binding-protein-dependent transport system inner membrane component VY92_001780 PF00528 Binding-protein-dependent transport system inner membrane component VY92_001785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VY92_001790 PF04317 YcjX-like family, DUF463 VY92_001795 PF05128 Domain of unknown function (DUF697) VY92_001800 PF18024 Helix-turn-helix domain VY92_001800 PF00158 Sigma-54 interaction domain VY92_001815 PF06071 Protein of unknown function (DUF933) VY92_001815 PF01926 50S ribosome-binding GTPase VY92_001820 PF01195 Peptidyl-tRNA hydrolase VY92_001825 PF03364 Polyketide cyclase / dehydrase and lipid transport VY92_001830 PF03658 RnfH family Ubiquitin VY92_001835 PF08007 Cupin superfamily protein VY92_001840 PF02601 Exonuclease VII, large subunit VY92_001840 PF13742 OB-fold nucleic acid binding domain VY92_001845 PF01668 SmpB protein VY92_001850 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VY92_001855 PF04225 Opacity-associated protein A LysM-like domain VY92_001855 PF01551 Peptidase family M23 VY92_001860 PF00005 ABC transporter VY92_001865 PF00950 ABC 3 transport family VY92_001870 PF00012 Hsp70 protein VY92_001875 PF00684 DnaJ central domain VY92_001875 PF00226 DnaJ domain VY92_001875 PF01556 DnaJ C terminal domain VY92_001880 PF05198 Translation initiation factor IF-3, N-terminal domain VY92_001880 PF00707 Translation initiation factor IF-3, C-terminal domain VY92_001885 PF01632 Ribosomal protein L35 VY92_001890 PF00453 Ribosomal protein L20 VY92_001895 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VY92_001895 PF00270 DEAD/DEAH box helicase VY92_001895 PF00271 Helicase conserved C-terminal domain VY92_001895 PF11898 Domain of unknown function (DUF3418) VY92_001895 PF04408 Helicase associated domain (HA2) VY92_001905 PF00939 Sodium:sulfate symporter transmembrane region VY92_001910 PF08267 Cobalamin-independent synthase, N-terminal domain VY92_001910 PF01717 Cobalamin-independent synthase, Catalytic domain VY92_001915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_001915 PF03466 LysR substrate binding domain VY92_001920 PF03591 AzlC protein VY92_001925 PF05437 Branched-chain amino acid transport protein (AzlD) VY92_001930 PF07715 TonB-dependent Receptor Plug Domain VY92_001930 PF00593 TonB dependent receptor VY92_001940 PF04216 Protein involved in formate dehydrogenase formation VY92_001945 PF01292 Prokaryotic cytochrome b561 VY92_001950 PF13247 4Fe-4S dicluster domain VY92_001950 PF09163 Formate dehydrogenase N, transmembrane VY92_001960 PF02634 FdhD/NarQ family VY92_001970 PF04284 Protein of unknown function (DUF441) VY92_001975 PF13520 Amino acid permease VY92_001980 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VY92_001980 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VY92_001980 PF01276 Orn/Lys/Arg decarboxylase, major domain VY92_002055 PF03412 Peptidase C39 family VY92_002055 PF00005 ABC transporter VY92_002055 PF00664 ABC transporter transmembrane region VY92_002065 PF00999 Sodium/hydrogen exchanger family VY92_002070 PF03372 Endonuclease/Exonuclease/phosphatase family VY92_002075 PF01042 Endoribonuclease L-PSP VY92_002080 PF14256 YwiC-like protein VY92_002100 PF00145 C-5 cytosine-specific DNA methylase VY92_002140 PF04381 Putative exonuclease, RdgC VY92_002155 PF00436 Single-strand binding protein family VY92_002200 PF07411 Domain of unknown function (DUF1508) VY92_002215 PF01726 LexA DNA binding domain VY92_002215 PF00717 Peptidase S24-like VY92_002240 PF01695 IstB-like ATP binding protein VY92_002405 PF03099 Biotin/lipoate A/B protein ligase family VY92_002405 PF00293 NUDIX domain VY92_002430 PF00182 Chitinase class I VY92_002455 PF10549 ORF11CD3 domain VY92_002455 PF09669 Phage regulatory protein Rha (Phage_pRha) VY92_002490 PF13356 Arm DNA-binding domain VY92_002490 PF14659 Phage integrase, N-terminal SAM-like domain VY92_002490 PF00589 Phage integrase family VY92_002495 PF02540 NAD synthase VY92_002495 PF00958 GMP synthase C terminal domain VY92_002495 PF00117 Glutamine amidotransferase class-I VY92_002510 PF00571 CBS domain VY92_002510 PF00478 IMP dehydrogenase / GMP reductase domain VY92_002515 PF03099 Biotin/lipoate A/B protein ligase family VY92_002515 PF02237 Biotin protein ligase C terminal domain VY92_002525 PF07411 Domain of unknown function (DUF1508) VY92_002530 PF00290 Tryptophan synthase alpha chain VY92_002535 PF00291 Pyridoxal-phosphate dependent enzyme VY92_002540 PF00218 Indole-3-glycerol phosphate synthase VY92_002540 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VY92_002545 PF02885 Glycosyl transferase family, helical bundle domain VY92_002545 PF00591 Glycosyl transferase family, a/b domain VY92_002550 PF14552 Tautomerase enzyme VY92_002555 PF00117 Glutamine amidotransferase class-I VY92_002560 PF04715 Anthranilate synthase component I, N terminal region VY92_002560 PF00425 chorismate binding enzyme VY92_002565 PF00206 Lyase VY92_002565 PF10415 Fumarase C C-terminus VY92_002570 PF04364 DNA polymerase III chi subunit, HolC VY92_002575 PF13673 Acetyltransferase (GNAT) domain VY92_002585 PF06414 Zeta toxin VY92_002590 PF00145 C-5 cytosine-specific DNA methylase VY92_002600 PF10458 Valyl tRNA synthetase tRNA binding arm VY92_002600 PF00133 tRNA synthetases class I (I, L, M and V) VY92_002600 PF08264 Anticodon-binding domain of tRNA VY92_002605 PF01066 CDP-alcohol phosphatidyltransferase VY92_002610 PF02525 Flavodoxin-like fold VY92_002625 PF07690 Major Facilitator Superfamily VY92_002640 PF01965 DJ-1/PfpI family VY92_002645 PF00106 short chain dehydrogenase VY92_002650 PF00893 Small Multidrug Resistance protein VY92_002660 PF04247 Invasion gene expression up-regulator, SirB VY92_002665 PF03989 DNA gyrase C-terminal domain, beta-propeller VY92_002665 PF00521 DNA gyrase/topoisomerase IV, subunit A VY92_002675 PF01475 Ferric uptake regulator family VY92_002680 PF00258 Flavodoxin VY92_002685 PF01402 Ribbon-helix-helix protein, copG family VY92_002690 PF00561 alpha/beta hydrolase fold VY92_002695 PF17206 SeqA protein N-terminal domain VY92_002695 PF03925 SeqA protein C-terminal domain VY92_002700 PF00501 AMP-binding enzyme VY92_002705 PF00924 Mechanosensitive ion channel VY92_002705 PF12794 Mechanosensitive ion channel inner membrane domain 1 VY92_002705 PF12795 Mechanosensitive ion channel porin domain VY92_002710 PF01264 Chorismate synthase VY92_002715 PF03411 Penicillin-insensitive murein endopeptidase VY92_002720 PF01925 Sulfite exporter TauE/SafE VY92_002725 PF03279 Bacterial lipid A biosynthesis acyltransferase VY92_002730 PF00156 Phosphoribosyl transferase domain VY92_002735 PF12170 DNA polymerase III tau subunit V interacting with alpha VY92_002735 PF12169 DNA polymerase III subunits gamma and tau domain III VY92_002740 PF02554 Carbon starvation protein CstA VY92_002745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VY92_002745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VY92_002750 PF00392 Bacterial regulatory proteins, gntR family VY92_002750 PF07729 FCD domain VY92_002755 PF17912 MalK OB fold domain VY92_002755 PF03459 TOBE domain VY92_002755 PF00005 ABC transporter VY92_002765 PF00528 Binding-protein-dependent transport system inner membrane component VY92_002770 PF00528 Binding-protein-dependent transport system inner membrane component VY92_002775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VY92_002775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VY92_002785 PF00390 Malic enzyme, N-terminal domain VY92_002785 PF03949 Malic enzyme, NAD binding domain VY92_002790 PF01638 HxlR-like helix-turn-helix VY92_002800 PF13416 Bacterial extracellular solute-binding protein VY92_002805 PF00528 Binding-protein-dependent transport system inner membrane component VY92_002810 PF00528 Binding-protein-dependent transport system inner membrane component VY92_002815 PF08402 TOBE domain VY92_002815 PF00005 ABC transporter VY92_002820 PF01546 Peptidase family M20/M25/M40 VY92_002820 PF07687 Peptidase dimerisation domain VY92_002825 PF03710 Glutamate-ammonia ligase adenylyltransferase VY92_002825 PF08335 GlnD PII-uridylyltransferase VY92_002835 PF00528 Binding-protein-dependent transport system inner membrane component VY92_002840 PF00005 ABC transporter VY92_002845 PF06968 Biotin and Thiamin Synthesis associated domain VY92_002845 PF04055 Radical SAM superfamily VY92_002850 PF00027 Cyclic nucleotide-binding domain VY92_002855 PF01925 Sulfite exporter TauE/SafE VY92_002865 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VY92_002865 PF02278 Polysaccharide lyase family 8, super-sandwich domain VY92_002865 PF09092 Lyase, N terminal VY92_002865 PF09093 Lyase, catalytic VY92_002870 PF03616 Sodium/glutamate symporter VY92_002875 PF03459 TOBE domain VY92_002875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_002885 PF00528 Binding-protein-dependent transport system inner membrane component VY92_002890 PF00005 ABC transporter VY92_002890 PF03459 TOBE domain VY92_002895 PF00750 tRNA synthetases class I (R) VY92_002895 PF03485 Arginyl tRNA synthetase N terminal domain VY92_002895 PF05746 DALR anticodon binding domain VY92_002900 PF06185 YecM protein VY92_002905 PF00772 DnaB-like helicase N terminal domain VY92_002905 PF03796 DnaB-like helicase C terminal domain VY92_002910 PF01168 Alanine racemase, N-terminal domain VY92_002910 PF00842 Alanine racemase, C-terminal domain VY92_002915 PF00342 Phosphoglucose isomerase VY92_002925 PF00717 Peptidase S24-like VY92_002930 PF00375 Sodium:dicarboxylate symporter family VY92_002935 PF13609 Gram-negative porin VY92_002940 PF13609 Gram-negative porin VY92_002945 PF13609 Gram-negative porin VY92_002955 PF13649 Methyltransferase domain VY92_002960 PF04221 RelB antitoxin VY92_002965 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ VY92_002970 PF01336 OB-fold nucleic acid binding domain VY92_002970 PF00152 tRNA synthetases class II (D, K and N) VY92_002970 PF02938 GAD domain VY92_002975 PF00293 NUDIX domain VY92_002980 PF01709 Transcriptional regulator VY92_002985 PF02075 Crossover junction endodeoxyribonuclease RuvC VY92_002990 PF07499 RuvA, C-terminal domain VY92_002990 PF01330 RuvA N terminal domain VY92_002995 PF05496 Holliday junction DNA helicase RuvB P-loop domain VY92_002995 PF05491 RuvB C-terminal winged helix domain VY92_002995 PF17864 RuvB AAA lid domain VY92_003000 PF02595 Glycerate kinase family VY92_003005 PF02447 GntP family permease VY92_003010 PF17853 GGDEF-like domain VY92_003010 PF05651 Putative sugar diacid recognition VY92_003010 PF13556 PucR C-terminal helix-turn-helix domain VY92_003015 PF00312 Ribosomal protein S15 VY92_003020 PF00155 Aminotransferase class I and II VY92_003025 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VY92_003025 PF02222 ATP-grasp domain VY92_003030 PF00484 Carbonic anhydrase VY92_003035 PF01384 Phosphate transporter family VY92_003040 PF01865 Protein of unknown function DUF47 VY92_003045 PF01928 CYTH domain VY92_003050 PF18073 Rubredoxin metal binding domain VY92_003055 PF03797 Autotransporter beta-domain VY92_003055 PF02395 Immunoglobulin A1 protease VY92_003055 PF03212 Pertactin VY92_003065 PF02581 Thiamine monophosphate synthase VY92_003070 PF08543 Phosphomethylpyrimidine kinase VY92_003075 PF02110 Hydroxyethylthiazole kinase family VY92_003080 PF13567 Domain of unknown function (DUF4131) VY92_003080 PF03772 Competence protein VY92_003080 PF00753 Metallo-beta-lactamase superfamily VY92_003085 PF00664 ABC transporter transmembrane region VY92_003085 PF00005 ABC transporter VY92_003090 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VY92_003095 PF03966 Trm112p-like protein VY92_003100 PF02348 Cytidylyltransferase VY92_003105 PF09084 NMT1/THI5 like VY92_003110 PF00528 Binding-protein-dependent transport system inner membrane component VY92_003115 PF00005 ABC transporter VY92_003120 PF02151 UvrB/uvrC motif VY92_003120 PF01541 GIY-YIG catalytic domain VY92_003120 PF08459 UvrC Helix-hairpin-helix N-terminal VY92_003125 PF09335 SNARE associated Golgi protein VY92_003130 PF01386 Ribosomal L25p family VY92_003135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VY92_003135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VY92_003140 PF01554 MatE VY92_003145 PF00677 Lumazine binding domain VY92_003155 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VY92_003170 PF00925 GTP cyclohydrolase II VY92_003175 PF01569 PAP2 superfamily VY92_003180 PF00480 ROK family VY92_003195 PF01235 Sodium:alanine symporter family VY92_003210 PF17384 RimP C-terminal SH3 domain VY92_003210 PF02576 RimP N-terminal domain VY92_003215 PF00575 S1 RNA binding domain VY92_003215 PF08529 NusA N-terminal domain VY92_003215 PF13184 NusA-like KH domain VY92_003220 PF11987 Translation-initiation factor 2 VY92_003220 PF08364 Bacterial translation initiation factor IF-2 associated region VY92_003220 PF04760 Translation initiation factor IF-2, N-terminal region VY92_003220 PF00009 Elongation factor Tu GTP binding domain VY92_003225 PF11742 Protein of unknown function (DUF3302) VY92_003230 PF00529 HlyD membrane-fusion protein of T1SS VY92_003230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VY92_003235 PF02033 Ribosome-binding factor A VY92_003240 PF16198 tRNA pseudouridylate synthase B C-terminal domain VY92_003240 PF01509 TruB family pseudouridylate synthase (N terminal domain) VY92_003240 PF09157 Pseudouridine synthase II TruB, C-terminal VY92_003245 PF00330 Aconitase family (aconitate hydratase) VY92_003245 PF11791 Aconitate B N-terminal domain VY92_003245 PF06434 Aconitate hydratase 2 N-terminus VY92_003250 PF03795 YCII-related domain VY92_003255 PF03061 Thioesterase superfamily VY92_003260 PF04279 Intracellular septation protein A VY92_003270 PF03922 OmpW family VY92_003275 PF00762 Ferrochelatase VY92_003280 PF03061 Thioesterase superfamily VY92_003285 PF01565 FAD binding domain VY92_003285 PF13183 4Fe-4S dicluster domain VY92_003285 PF02913 FAD linked oxidases, C-terminal domain VY92_003290 PF01389 OmpA-like transmembrane domain VY92_003290 PF00691 OmpA family VY92_003295 PF04011 LemA family VY92_003310 PF00462 Glutaredoxin VY92_003340 PF08239 Bacterial SH3 domain VY92_003345 PF12627 Probable RNA and SrmB- binding site of polymerase A VY92_003345 PF01743 Poly A polymerase head domain VY92_003345 PF01966 HD domain VY92_003350 PF08942 Domain of unknown function (DUF1919) VY92_003355 PF02682 Carboxyltransferase domain, subdomain C and D VY92_003360 PF02626 Carboxyltransferase domain, subdomain A and B VY92_003365 PF03746 LamB/YcsF family VY92_003370 PF01566 Natural resistance-associated macrophage protein VY92_003380 PF13419 Haloacid dehalogenase-like hydrolase VY92_003385 PF02219 Methylenetetrahydrofolate reductase VY92_003395 PF03372 Endonuclease/Exonuclease/phosphatase family VY92_003400 PF00196 Bacterial regulatory proteins, luxR family VY92_003400 PF00072 Response regulator receiver domain VY92_003405 PF02525 Flavodoxin-like fold VY92_003410 PF08496 Peptidase family S49 N-terminal VY92_003410 PF01343 Peptidase family S49 VY92_003420 PF00149 Calcineurin-like phosphoesterase VY92_003425 PF00317 Ribonucleotide reductase, all-alpha domain VY92_003425 PF03477 ATP cone domain VY92_003425 PF02867 Ribonucleotide reductase, barrel domain VY92_003430 PF06965 Na+/H+ antiporter 1 VY92_003435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VY92_003440 PF00578 AhpC/TSA family VY92_003445 PF06733 DEAD_2 VY92_003445 PF13307 Helicase C-terminal domain VY92_003450 PF00814 Glycoprotease family VY92_003455 PF13193 AMP-binding enzyme C-terminal domain VY92_003455 PF00501 AMP-binding enzyme VY92_003460 PF01612 3'-5' exonuclease VY92_003460 PF00570 HRDC domain VY92_003475 PF00664 ABC transporter transmembrane region VY92_003475 PF00005 ABC transporter VY92_003480 PF00664 ABC transporter transmembrane region VY92_003480 PF00005 ABC transporter VY92_003485 PF07992 Pyridine nucleotide-disulphide oxidoreductase VY92_003495 PF02447 GntP family permease VY92_003500 PF01202 Shikimate kinase VY92_003510 PF00209 Sodium:neurotransmitter symporter family VY92_003515 PF00730 HhH-GPD superfamily base excision DNA repair protein VY92_003515 PF00633 Helix-hairpin-helix motif VY92_003515 PF10576 Iron-sulfur binding domain of endonuclease III VY92_003520 PF02508 Rnf-Nqr subunit, membrane protein VY92_003525 PF04205 FMN-binding domain VY92_003530 PF03116 NQR2, RnfD, RnfE family VY92_003535 PF13375 RnfC Barrel sandwich hybrid domain VY92_003535 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VY92_003535 PF13237 4Fe-4S dicluster domain VY92_003540 PF04060 Putative Fe-S cluster VY92_003545 PF02508 Rnf-Nqr subunit, membrane protein VY92_003550 PF01370 NAD dependent epimerase/dehydratase family VY92_003550 PF08338 Domain of unknown function (DUF1731) VY92_003555 PF02863 Arginine repressor, C-terminal domain VY92_003555 PF01316 Arginine repressor, DNA binding domain VY92_003560 PF00056 lactate/malate dehydrogenase, NAD binding domain VY92_003560 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VY92_003575 PF00571 CBS domain VY92_003575 PF01380 SIS domain VY92_003585 PF05175 Methyltransferase small domain VY92_003590 PF01713 Smr domain VY92_003595 PF01416 tRNA pseudouridine synthase VY92_003600 PF01039 Carboxyl transferase domain VY92_003600 PF17848 Acetyl-coA carboxylase zinc finger domain VY92_003605 PF08245 Mur ligase middle domain VY92_003610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VY92_003610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VY92_003615 PF03701 Uncharacterised protein family (UPF0181) VY92_003620 PF00313 'Cold-shock' DNA-binding domain VY92_003635 PF00356 Bacterial regulatory proteins, lacI family VY92_003635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VY92_003640 PF02769 AIR synthase related protein, C-terminal domain VY92_003640 PF00586 AIR synthase related protein, N-terminal domain VY92_003645 PF06303 MatP N-terminal domain VY92_003645 PF17414 MatP C-terminal ribbon-helix-helix domain VY92_003650 PF13654 AAA domain VY92_003650 PF05362 Lon protease (S16) C-terminal proteolytic domain VY92_003655 PF07977 FabA-like domain VY92_003660 PF04073 Aminoacyl-tRNA editing domain VY92_003670 PF00860 Permease family VY92_003675 PF02635 DsrE/DsrF-like family VY92_003680 PF00580 UvrD/REP helicase N-terminal domain VY92_003680 PF13361 UvrD-like helicase C-terminal domain VY92_003680 PF12705 PD-(D/E)XK nuclease superfamily VY92_003685 PF13538 UvrD-like helicase C-terminal domain VY92_003690 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin VY92_003690 PF13018 Extended Signal Peptide of Type V secretion system VY92_003690 PF05662 Coiled stalk of trimeric autotransporter adhesin VY92_003690 PF03895 YadA-like membrane anchor domain VY92_003695 PF00152 tRNA synthetases class II (D, K and N) VY92_003695 PF01336 OB-fold nucleic acid binding domain VY92_003700 PF00480 ROK family VY92_003700 PF01047 MarR family VY92_003710 PF01842 ACT domain VY92_003710 PF00551 Formyl transferase VY92_003715 PF00300 Histidine phosphatase superfamily (branch 1) VY92_003720 PF13091 PLD-like domain VY92_003720 PF13396 Phospholipase_D-nuclease N-terminal VY92_003725 PF00849 RNA pseudouridylate synthase VY92_003730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VY92_003730 PF01409 tRNA synthetases class II core domain (F) VY92_003735 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VY92_003735 PF03484 tRNA synthetase B5 domain VY92_003735 PF03147 Ferredoxin-fold anticodon binding domain VY92_003735 PF03483 B3/4 domain VY92_003735 PF01588 Putative tRNA binding domain VY92_003740 PF00216 Bacterial DNA-binding protein VY92_003745 PF00877 NlpC/P60 family VY92_003750 PF03797 Autotransporter beta-domain VY92_003760 PF01171 PP-loop family VY92_003765 PF17192 MukF middle domain VY92_003765 PF17193 MukF C-terminal domain VY92_003765 PF03882 MukF winged-helix domain VY92_003770 PF04288 MukE-like family VY92_003775 PF04310 MukB N-terminal VY92_003775 PF16330 MukB hinge domain VY92_003785 PF00929 Exonuclease VY92_003785 PF08411 Exonuclease C-terminal VY92_003800 PF12762 ISXO2-like transposase domain VY92_003805 PF04386 Stringent starvation protein B VY92_003810 PF13417 Glutathione S-transferase, N-terminal domain VY92_003810 PF00043 Glutathione S-transferase, C-terminal domain VY92_003815 PF00380 Ribosomal protein S9/S16 VY92_003820 PF00572 Ribosomal protein L13 VY92_003825 PF00849 RNA pseudouridylate synthase VY92_003830 PF04287 tRNA pseudouridine synthase C VY92_003835 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VY92_003845 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VY92_003845 PF14489 QueF-like protein VY92_003850 PF03641 Possible lysine decarboxylase VY92_003850 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VY92_003850 PF11892 Domain of unknown function (DUF3412) VY92_003855 PF08681 Protein of unknown function (DUF1778) VY92_003865 PF00535 Glycosyl transferase family 2 VY92_003870 PF01061 ABC-2 type transporter VY92_003875 PF00005 ABC transporter VY92_003880 PF04315 Elongation factor P hydroxylase VY92_003885 PF01435 Peptidase family M48 VY92_003890 PF11798 IMS family HHH motif VY92_003890 PF00817 impB/mucB/samB family VY92_003895 PF00343 Carbohydrate phosphorylase VY92_003900 PF00534 Glycosyl transferases group 1 VY92_003900 PF08323 Starch synthase catalytic domain VY92_003905 PF00483 Nucleotidyl transferase VY92_003910 PF00128 Alpha amylase, catalytic domain VY92_003910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VY92_003910 PF18390 Glycogen debranching enzyme C-terminal domain VY92_003915 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VY92_003915 PF02806 Alpha amylase, C-terminal all-beta domain VY92_003915 PF00128 Alpha amylase, catalytic domain VY92_003920 PF02446 4-alpha-glucanotransferase VY92_003925 PF05656 Protein of unknown function (DUF805) VY92_003935 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VY92_003935 PF00749 tRNA synthetases class I (E and Q), catalytic domain VY92_003945 PF02687 FtsX-like permease family VY92_003945 PF12704 MacB-like periplasmic core domain VY92_003945 PF00005 ABC transporter VY92_003950 PF02321 Outer membrane efflux protein VY92_003960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VY92_003960 PF07992 Pyridine nucleotide-disulphide oxidoreductase VY92_003965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VY92_003965 PF02817 e3 binding domain VY92_003965 PF00364 Biotin-requiring enzyme VY92_003970 PF00456 Transketolase, thiamine diphosphate binding domain VY92_003970 PF17831 Pyruvate dehydrogenase E1 component middle domain VY92_003975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VY92_003980 PF02896 PEP-utilising enzyme, TIM barrel domain VY92_003980 PF00391 PEP-utilising enzyme, mobile domain VY92_003980 PF05524 PEP-utilising enzyme, N-terminal VY92_003985 PF00381 PTS HPr component phosphorylation site VY92_003990 PF03193 RsgA GTPase VY92_003995 PF00929 Exonuclease VY92_004010 PF03462 PCRF domain VY92_004010 PF00472 RF-1 domain VY92_004015 PF02403 Seryl-tRNA synthetase N-terminal domain VY92_004015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VY92_004020 PF12002 MgsA AAA+ ATPase C terminal VY92_004020 PF16193 AAA C-terminal domain VY92_004020 PF00004 ATPase family associated with various cellular activities (AAA) VY92_004035 PF03548 Outer membrane lipoprotein carrier protein LolA VY92_004040 PF09397 Ftsk gamma domain VY92_004040 PF01580 FtsK/SpoIIIE family VY92_004040 PF17854 FtsK alpha domain VY92_004040 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VY92_004045 PF01037 Lrp/AsnC ligand binding domain VY92_004050 PF13286 Phosphohydrolase-associated domain VY92_004050 PF01966 HD domain VY92_004055 PF04172 LrgB-like family VY92_004060 PF03788 LrgA family VY92_004065 PF00565 Staphylococcal nuclease homologue VY92_004070 PF00266 Aminotransferase class-V VY92_004075 PF02657 Fe-S metabolism associated domain VY92_004080 PF16036 Chalcone isomerase-like VY92_004085 PF05728 Uncharacterised protein family (UPF0227) VY92_004090 PF08443 RimK-like ATP-grasp domain VY92_004090 PF18030 RimK PreATP-grasp domain VY92_004095 PF00462 Glutaredoxin VY92_004100 PF00696 Amino acid kinase family VY92_004100 PF00583 Acetyltransferase (GNAT) family VY92_004105 PF00171 Aldehyde dehydrogenase family VY92_004110 PF01258 Prokaryotic dksA/traR C4-type zinc finger VY92_004115 PF12626 Polymerase A arginine-rich C-terminus VY92_004115 PF12627 Probable RNA and SrmB- binding site of polymerase A VY92_004115 PF01743 Poly A polymerase head domain VY92_004120 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VY92_004125 PF02926 THUMP domain VY92_004125 PF02568 Thiamine biosynthesis protein (ThiI) VY92_004135 PF00348 Polyprenyl synthetase VY92_004140 PF02780 Transketolase, C-terminal domain VY92_004140 PF02779 Transketolase, pyrimidine binding domain VY92_004140 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VY92_004145 PF01985 CRS1 / YhbY (CRM) domain VY92_004150 PF03449 Transcription elongation factor, N-terminal VY92_004150 PF01272 Transcription elongation factor, GreA/GreB, C-term VY92_004155 PF03476 MOSC N-terminal beta barrel domain VY92_004155 PF03473 MOSC domain VY92_004155 PF00111 2Fe-2S iron-sulfur cluster binding domain VY92_004165 PF01817 Chorismate mutase type II VY92_004165 PF02153 Prephenate dehydrogenase VY92_004170 PF00793 DAHP synthetase I family VY92_004175 PF02811 PHP domain VY92_004180 PF01180 Dihydroorotate dehydrogenase VY92_004185 PF01433 Peptidase family M1 domain VY92_004185 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VY92_004185 PF11940 Domain of unknown function (DUF3458) Ig-like fold VY92_004190 PF00731 AIR carboxylase VY92_004235 PF02441 Flavoprotein VY92_004240 PF00156 Phosphoribosyl transferase domain VY92_004245 PF02674 Colicin V production protein VY92_004250 PF04217 Protein of unknown function, DUF412 VY92_004255 PF00871 Acetokinase family VY92_004260 PF01515 Phosphate acetyl/butaryl transferase VY92_004260 PF07085 DRTGG domain VY92_004270 PF00577 Outer membrane usher protein VY92_004270 PF13954 PapC N-terminal domain VY92_004270 PF13953 PapC C-terminal domain VY92_004275 PF02753 Pili assembly chaperone PapD, C-terminal domain VY92_004275 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain VY92_004280 PF16970 Type-1 fimbrial protein, A VY92_004285 PF05552 Conserved TM helix VY92_004285 PF00924 Mechanosensitive ion channel VY92_004290 PF03739 Lipopolysaccharide export system permease LptF/LptG VY92_004295 PF03739 Lipopolysaccharide export system permease LptF/LptG VY92_004300 PF02789 Cytosol aminopeptidase family, N-terminal domain VY92_004300 PF00883 Cytosol aminopeptidase family, catalytic domain VY92_004315 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VY92_004315 PF01488 Shikimate / quinate 5-dehydrogenase VY92_004315 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VY92_004320 PF00753 Metallo-beta-lactamase superfamily VY92_004320 PF16123 Hydroxyacylglutathione hydrolase C-terminus VY92_004325 PF08241 Methyltransferase domain VY92_004330 PF18381 YcaO cyclodehydratase C-terminal domain VY92_004330 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding VY92_004335 PF06295 Protein of unknown function (DUF1043) VY92_004340 PF00268 Ribonucleotide reductase, small chain VY92_004355 PF00111 2Fe-2S iron-sulfur cluster binding domain VY92_004360 PF01113 Dihydrodipicolinate reductase, N-terminus VY92_004360 PF05173 Dihydrodipicolinate reductase, C-terminus VY92_004365 PF01810 LysE type translocator VY92_004370 PF04608 Phosphatidylglycerophosphatase A VY92_004375 PF02769 AIR synthase related protein, C-terminal domain VY92_004375 PF00586 AIR synthase related protein, N-terminal domain VY92_004380 PF01029 NusB family VY92_004385 PF00885 6,7-dimethyl-8-ribityllumazine synthase VY92_004390 PF03222 Tryptophan/tyrosine permease family VY92_004400 PF00300 Histidine phosphatase superfamily (branch 1) VY92_004405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VY92_004405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VY92_004405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VY92_004405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VY92_004410 PF00809 Pterin binding enzyme VY92_004420 PF13180 PDZ domain VY92_004425 PF01872 RibD C-terminal domain VY92_004425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VY92_004430 PF03477 ATP cone domain VY92_004435 PF09313 Domain of unknown function (DUF1971) VY92_004435 PF03848 Tellurite resistance protein TehB VY92_004465 PF03129 Anticodon binding domain VY92_004465 PF02824 TGS domain VY92_004465 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VY92_004465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VY92_004470 PF13417 Glutathione S-transferase, N-terminal domain VY92_004470 PF04399 Glutaredoxin 2, C terminal domain VY92_004510 PF00589 Phage integrase family VY92_004510 PF13356 Arm DNA-binding domain VY92_004520 PF03881 Fructosamine kinase VY92_004530 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) VY92_004535 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) VY92_004540 PF00271 Helicase conserved C-terminal domain VY92_004540 PF02151 UvrB/uvrC motif VY92_004540 PF12344 Ultra-violet resistance protein B VY92_004540 PF17757 UvrB interaction domain VY92_004540 PF04851 Type III restriction enzyme, res subunit VY92_004550 PF01699 Sodium/calcium exchanger protein VY92_004555 PF03824 High-affinity nickel-transport protein VY92_004560 PF06226 Protein of unknown function (DUF1007) VY92_004565 PF00005 ABC transporter VY92_004565 PF12848 ABC transporter VY92_004570 PF07687 Peptidase dimerisation domain VY92_004570 PF01546 Peptidase family M20/M25/M40 VY92_004580 PF00356 Bacterial regulatory proteins, lacI family VY92_004585 PF00294 pfkB family carbohydrate kinase VY92_004590 PF07670 Nucleoside recognition VY92_004590 PF07662 Na+ dependent nucleoside transporter C-terminus VY92_004590 PF01773 Na+ dependent nucleoside transporter N-terminus VY92_004595 PF01156 Inosine-uridine preferring nucleoside hydrolase VY92_004600 PF00595 PDZ domain VY92_004605 PF01027 Inhibitor of apoptosis-promoting Bax1 VY92_004610 PF04358 DsrC like protein VY92_004615 PF01297 Zinc-uptake complex component A periplasmic VY92_004620 PF00005 ABC transporter VY92_004625 PF00950 ABC 3 transport family VY92_004630 PF00950 ABC 3 transport family VY92_004635 PF00561 alpha/beta hydrolase fold VY92_004640 PF02698 DUF218 domain VY92_004645 PF00356 Bacterial regulatory proteins, lacI family VY92_004645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VY92_004650 PF00793 DAHP synthetase I family VY92_004655 PF12704 MacB-like periplasmic core domain VY92_004655 PF02687 FtsX-like permease family VY92_004660 PF00005 ABC transporter VY92_004665 PF12704 MacB-like periplasmic core domain VY92_004665 PF02687 FtsX-like permease family VY92_004670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VY92_004670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VY92_004675 PF00793 DAHP synthetase I family VY92_004680 PF13369 Transglutaminase-like superfamily VY92_004685 PF17827 PrmC N-terminal domain VY92_004685 PF13847 Methyltransferase domain VY92_004690 PF06480 FtsH Extracellular VY92_004690 PF00004 ATPase family associated with various cellular activities (AAA) VY92_004690 PF17862 AAA+ lid domain VY92_004690 PF01434 Peptidase family M41 VY92_004695 PF01728 FtsJ-like methyltransferase VY92_004700 PF12805 FUSC-like inner membrane protein yccS VY92_004705 PF02142 MGS-like domain VY92_004710 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VY92_004715 PF02391 MoaE protein VY92_004720 PF02597 ThiS family VY92_004725 PF01967 MoaC family VY92_004730 PF04055 Radical SAM superfamily VY92_004730 PF06463 Molybdenum Cofactor Synthesis C VY92_004735 PF01933 Uncharacterised protein family UPF0052 VY92_004745 PF13953 PapC C-terminal domain VY92_004745 PF00577 Outer membrane usher protein VY92_004745 PF13954 PapC N-terminal domain VY92_004750 PF02753 Pili assembly chaperone PapD, C-terminal domain VY92_004750 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain VY92_004770 PF03062 MBOAT, membrane-bound O-acyltransferase family VY92_004775 PF01227 GTP cyclohydrolase I VY92_004780 PF00994 Probable molybdopterin binding domain VY92_004780 PF03454 MoeA C-terminal region (domain IV) VY92_004780 PF03453 MoeA N-terminal region (domain I and II) VY92_004785 PF00899 ThiF family VY92_004790 PF03956 Lysine exporter LysO VY92_004795 PF00210 Ferritin-like domain VY92_004800 PF00210 Ferritin-like domain VY92_004810 PF00027 Cyclic nucleotide-binding domain VY92_004810 PF13545 Crp-like helix-turn-helix domain VY92_004815 PF00582 Universal stress protein family VY92_004825 PF00132 Bacterial transferase hexapeptide (six repeats) VY92_004825 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal VY92_004825 PF14602 Hexapeptide repeat of succinyl-transferase VY92_004830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_004830 PF03466 LysR substrate binding domain VY92_004835 PF00849 RNA pseudouridylate synthase VY92_004835 PF01479 S4 domain VY92_004840 PF01300 Telomere recombination VY92_004845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VY92_004850 PF04348 LppC putative lipoprotein VY92_004855 PF02021 Uncharacterised protein family UPF0102 VY92_004860 PF13580 SIS domain VY92_004865 PF04972 BON domain VY92_004870 PF13361 UvrD-like helicase C-terminal domain VY92_004870 PF00580 UvrD/REP helicase N-terminal domain VY92_004885 PF01728 FtsJ-like methyltransferase VY92_004885 PF18125 RlmM ferredoxin-like domain VY92_004890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_004890 PF03466 LysR substrate binding domain VY92_004895 PF01063 Amino-transferase class IV VY92_004900 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin VY92_004900 PF13018 Extended Signal Peptide of Type V secretion system VY92_004900 PF05662 Coiled stalk of trimeric autotransporter adhesin VY92_004900 PF03895 YadA-like membrane anchor domain VY92_004910 PF03840 Preprotein translocase SecG subunit VY92_004915 PF01751 Toprim domain VY92_004915 PF01131 DNA topoisomerase VY92_004920 PF02575 YbaB/EbfC DNA-binding family VY92_004925 PF02132 RecR protein VY92_004925 PF13662 Toprim domain VY92_004930 PF01053 Cys/Met metabolism PLP-dependent enzyme VY92_004935 PF10417 C-terminal domain of 1-Cys peroxiredoxin VY92_004935 PF00578 AhpC/TSA family VY92_004940 PF05166 YcgL domain VY92_004945 PF01467 Cytidylyltransferase-like VY92_004945 PF00294 pfkB family carbohydrate kinase VY92_004950 PF03279 Bacterial lipid A biosynthesis acyltransferase VY92_004955 PF00753 Metallo-beta-lactamase superfamily VY92_004960 PF05951 Bacterial protein of unknown function (DUF882) VY92_004965 PF03734 L,D-transpeptidase catalytic domain VY92_004970 PF17804 Tail specific protease N-terminal domain VY92_004970 PF03572 Peptidase family S41 VY92_004970 PF00595 PDZ domain VY92_004970 PF11818 C-terminal domain of tail specific protease (DUF3340) VY92_004975 PF17516 ProQ C-terminal domain VY92_004975 PF04352 ProQ/FINO family VY92_004980 PF04403 Paraquat-inducible protein A VY92_004990 PF00204 DNA gyrase B VY92_004990 PF01751 Toprim domain VY92_004990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VY92_004990 PF00986 DNA gyrase B subunit, carboxyl terminus VY92_005000 PF07732 Multicopper oxidase VY92_005005 PF00521 DNA gyrase/topoisomerase IV, subunit A VY92_005005 PF03989 DNA gyrase C-terminal domain, beta-propeller VY92_005010 PF11230 Protein of unknown function (DUF3029) VY92_005015 PF04055 Radical SAM superfamily VY92_005020 PF03783 Curli production assembly/transport component CsgG VY92_005030 PF05643 Putative bacterial lipoprotein (DUF799) VY92_005035 PF01131 DNA topoisomerase VY92_005035 PF01396 Topoisomerase DNA binding C4 zinc finger VY92_005035 PF01751 Toprim domain VY92_005035 PF08272 Topoisomerase I zinc-ribbon-like VY92_005040 PF03466 LysR substrate binding domain VY92_005040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_005045 PF01343 Peptidase family S49 VY92_005050 PF00881 Nitroreductase family VY92_005055 PF05726 Pirin C-terminal cupin domain VY92_005055 PF02678 Pirin VY92_005065 PF03466 LysR substrate binding domain VY92_005065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_005070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VY92_005070 PF00056 lactate/malate dehydrogenase, NAD binding domain VY92_005075 PF10369 Small subunit of acetolactate synthase VY92_005080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VY92_005080 PF00205 Thiamine pyrophosphate enzyme, central domain VY92_005080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VY92_005085 PF03553 Na+/H+ antiporter family VY92_005090 PF00816 H-NS histone family VY92_005095 PF00773 RNB domain VY92_005095 PF00575 S1 RNA binding domain VY92_005095 PF08206 Ribonuclease B OB domain VY92_005105 PF01784 NIF3 (NGG1p interacting factor 3) VY92_005110 PF00356 Bacterial regulatory proteins, lacI family VY92_005115 PF00311 Phosphoenolpyruvate carboxylase VY92_005120 PF00919 Uncharacterized protein family UPF0004 VY92_005120 PF01938 TRAM domain VY92_005120 PF04055 Radical SAM superfamily VY92_005125 PF01494 FAD binding domain VY92_005150 PF00149 Calcineurin-like phosphoesterase VY92_005155 PF00293 NUDIX domain VY92_005160 PF06146 Phosphate-starvation-inducible E VY92_005165 PF02557 D-alanyl-D-alanine carboxypeptidase VY92_005170 PF01546 Peptidase family M20/M25/M40 VY92_005170 PF07687 Peptidase dimerisation domain VY92_005175 PF03960 ArsC family VY92_005180 PF02086 D12 class N6 adenine-specific DNA methyltransferase VY92_005185 PF05315 ICEA Protein VY92_005190 PF01555 DNA methylase VY92_005195 PF14821 Threonine synthase N terminus VY92_005195 PF00291 Pyridoxal-phosphate dependent enzyme VY92_005200 PF08544 GHMP kinases C terminal VY92_005200 PF00288 GHMP kinases N terminal domain VY92_005205 PF00696 Amino acid kinase family VY92_005205 PF03447 Homoserine dehydrogenase, NAD binding domain VY92_005205 PF00742 Homoserine dehydrogenase VY92_005205 PF13840 ACT domain VY92_005205 PF01842 ACT domain VY92_005210 PF01168 Alanine racemase, N-terminal domain VY92_005215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VY92_005220 PF00929 Exonuclease VY92_005225 PF03553 Na+/H+ antiporter family VY92_005225 PF13726 Na+-H+ antiporter family VY92_005230 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VY92_005230 PF01619 Proline dehydrogenase VY92_005230 PF00171 Aldehyde dehydrogenase family VY92_005230 PF14850 DNA-binding domain of Proline dehydrogenase VY92_005235 PF00474 Sodium:solute symporter family VY92_005240 PF02547 Queuosine biosynthesis protein VY92_005245 PF01702 Queuine tRNA-ribosyltransferase VY92_005250 PF01814 Hemerythrin HHE cation binding domain VY92_005255 PF02699 Preprotein translocase subunit VY92_005260 PF07549 SecD/SecF GG Motif VY92_005260 PF02355 Protein export membrane protein VY92_005260 PF13721 SecD export protein N-terminal TM region VY92_005265 PF07549 SecD/SecF GG Motif VY92_005265 PF02355 Protein export membrane protein VY92_005270 PF14718 Soluble lytic murein transglycosylase L domain VY92_005270 PF01464 Transglycosylase SLT domain VY92_005275 PF01371 Trp repressor protein VY92_005280 PF00912 Transglycosylase VY92_005285 PF00106 short chain dehydrogenase VY92_005290 PF12832 MFS_1 like family VY92_005315 PF04829 Pre-toxin domain with VENN motif VY92_005315 PF05860 haemagglutination activity domain VY92_005315 PF13332 Hemagglutinin repeat VY92_005315 PF13018 Extended Signal Peptide of Type V secretion system VY92_005340 PF01555 DNA methylase VY92_005350 PF03466 LysR substrate binding domain VY92_005350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_005355 PF08521 Two-component sensor kinase N-terminal VY92_005355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VY92_005355 PF00512 His Kinase A (phospho-acceptor) domain VY92_005360 PF00486 Transcriptional regulatory protein, C terminal VY92_005360 PF00072 Response regulator receiver domain VY92_005365 PF03070 TENA/THI-4/PQQC family VY92_005380 PF01757 Acyltransferase family VY92_005390 PF02233 NAD(P) transhydrogenase beta subunit VY92_005395 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VY92_005395 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VY92_005395 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VY92_005400 PF03749 Sugar fermentation stimulation protein RE domain VY92_005400 PF17746 SfsA N-terminal OB domain VY92_005410 PF00884 Sulfatase VY92_005410 PF16347 Domain of unknown function (DUF4976) VY92_005420 PF03102 NeuB family VY92_005420 PF08666 SAF domain VY92_005425 PF13472 GDSL-like Lipase/Acylhydrolase family VY92_005425 PF02348 Cytidylyltransferase VY92_005430 PF02350 UDP-N-acetylglucosamine 2-epimerase VY92_005435 PF00579 tRNA synthetases class I (W and Y) VY92_005435 PF01479 S4 domain VY92_005440 PF00294 pfkB family carbohydrate kinase VY92_005445 PF08244 Glycosyl hydrolases family 32 C terminal VY92_005445 PF00251 Glycosyl hydrolases family 32 N-terminal domain VY92_005460 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VY92_005465 PF01520 N-acetylmuramoyl-L-alanine amidase VY92_005465 PF01476 LysM domain VY92_005470 PF08676 MutL C terminal dimerisation domain VY92_005470 PF01119 DNA mismatch repair protein, C-terminal domain VY92_005480 PF17209 Hfq protein VY92_005485 PF01926 50S ribosome-binding GTPase VY92_005485 PF16360 GTP-binding GTPase Middle Region VY92_005485 PF13167 GTP-binding GTPase N-terminal VY92_005490 PF00860 Permease family VY92_005495 PF04269 Protein of unknown function, DUF440 VY92_005510 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VY92_005510 PF01926 50S ribosome-binding GTPase VY92_005520 PF03981 Ubiquinol-cytochrome C chaperone VY92_005520 PF13099 Domain of unknown function (DUF3944) VY92_005560 PF13280 WYL domain VY92_005560 PF08279 HTH domain VY92_005570 PF07445 Primosomal replication protein priC VY92_005575 PF17954 Quercetinase C-terminal cupin domain VY92_005575 PF02678 Pirin VY92_005580 PF13406 Transglycosylase SLT domain VY92_005585 PF00535 Glycosyl transferase family 2 VY92_005590 PF00535 Glycosyl transferase family 2 VY92_005600 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) VY92_005610 PF04230 Polysaccharide pyruvyl transferase VY92_005615 PF02698 DUF218 domain VY92_005620 PF02801 Beta-ketoacyl synthase, C-terminal domain VY92_005620 PF00109 Beta-ketoacyl synthase, N-terminal domain VY92_005625 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VY92_005625 PF01266 FAD dependent oxidoreductase VY92_005630 PF01588 Putative tRNA binding domain VY92_005630 PF09334 tRNA synthetases class I (M) VY92_005635 PF10609 NUBPL iron-transfer P-loop NTPase VY92_005640 PF03239 Iron permease FTR1 family VY92_005645 PF10634 Fe2+ transport protein VY92_005655 PF12704 MacB-like periplasmic core domain VY92_005655 PF02687 FtsX-like permease family VY92_005655 PF00005 ABC transporter VY92_005665 PF00005 ABC transporter VY92_005670 PF01263 Aldose 1-epimerase VY92_005680 PF01336 OB-fold nucleic acid binding domain VY92_005680 PF00152 tRNA synthetases class II (D, K and N) VY92_005685 PF02661 Fic/DOC family VY92_005685 PF12728 Helix-turn-helix domain VY92_005695 PF13098 Thioredoxin-like domain VY92_005695 PF10411 Disulfide bond isomerase protein N-terminus VY92_005700 PF17768 RecJ OB domain VY92_005700 PF02272 DHHA1 domain VY92_005700 PF01368 DHH family VY92_005705 PF01048 Phosphorylase superfamily VY92_005710 PF00691 OmpA family VY92_005710 PF01389 OmpA-like transmembrane domain VY92_005715 PF03831 PhnA domain VY92_005715 PF08274 PhnA Zinc-Ribbon VY92_005720 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VY92_005725 PF00005 ABC transporter VY92_005735 PF01032 FecCD transport family VY92_005745 PF10670 Domain of unknown function (DUF4198) VY92_005750 PF00593 TonB dependent receptor VY92_005750 PF07715 TonB-dependent Receptor Plug Domain VY92_005755 PF00593 TonB dependent receptor VY92_005755 PF07715 TonB-dependent Receptor Plug Domain VY92_005760 PF03313 Serine dehydratase alpha chain VY92_005770 PF08348 YheO-like PAS domain VY92_005770 PF13309 HTH domain VY92_005780 PF00224 Pyruvate kinase, barrel domain VY92_005780 PF02887 Pyruvate kinase, alpha/beta domain VY92_005785 PF00881 Nitroreductase family VY92_005790 PF08543 Phosphomethylpyrimidine kinase VY92_005795 PF09179 TilS substrate binding domain VY92_005795 PF01171 PP-loop family VY92_005795 PF11734 TilS substrate C-terminal domain VY92_005800 PF02629 CoA binding domain VY92_005800 PF00549 CoA-ligase VY92_005805 PF00549 CoA-ligase VY92_005805 PF08442 ATP-grasp domain VY92_005810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VY92_005810 PF00364 Biotin-requiring enzyme VY92_005810 PF02817 e3 binding domain VY92_005815 PF02779 Transketolase, pyrimidine binding domain VY92_005815 PF16870 2-oxoglutarate dehydrogenase C-terminal VY92_005815 PF16078 2-oxoglutarate dehydrogenase N-terminus VY92_005815 PF00676 Dehydrogenase E1 component VY92_005820 PF00285 Citrate synthase, C-terminal domain VY92_005830 PF02525 Flavodoxin-like fold VY92_005840 PF16200 C-terminal region of band_7 VY92_005840 PF01145 SPFH domain / Band 7 family VY92_005870 PF01047 MarR family VY92_005870 PF00480 ROK family VY92_005875 PF01025 GrpE VY92_005880 PF01513 ATP-NAD kinase VY92_005885 PF02463 RecF/RecN/SMC N terminal domain VY92_005890 PF01250 Ribosomal protein S6 VY92_005895 PF00436 Single-strand binding protein family VY92_005900 PF01084 Ribosomal protein S18 VY92_005905 PF03948 Ribosomal protein L9, C-terminal domain VY92_005905 PF01281 Ribosomal protein L9, N-terminal domain VY92_005910 PF00202 Aminotransferase class-III VY92_005915 PF01523 Putative modulator of DNA gyrase VY92_005920 PF00575 S1 RNA binding domain VY92_005920 PF10150 Ribonuclease E/G family VY92_005925 PF08003 Protein of unknown function (DUF1698) VY92_005970 PF00953 Glycosyl transferase family 4 VY92_005975 PF00202 Aminotransferase class-III VY92_005980 PF01966 HD domain VY92_005980 PF08335 GlnD PII-uridylyltransferase VY92_005985 PF00557 Metallopeptidase family M24 VY92_005990 PF01521 Iron-sulphur cluster biosynthesis VY92_005995 PF06062 Uncharacterised protein family (UPF0231) VY92_006000 PF14814 Bifunctional transglycosylase second domain VY92_006000 PF00912 Transglycosylase VY92_006000 PF00905 Penicillin binding protein transpeptidase domain VY92_006010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VY92_006015 PF04304 Protein of unknown function (DUF454) VY92_006020 PF01432 Peptidase family M3 VY92_006025 PF00152 tRNA synthetases class II (D, K and N) VY92_006030 PF00890 FAD binding domain VY92_006030 PF02910 Fumarate reductase flavoprotein C-term VY92_006035 PF13085 2Fe-2S iron-sulfur cluster binding domain VY92_006035 PF13183 4Fe-4S dicluster domain VY92_006040 PF02300 Fumarate reductase subunit C VY92_006045 PF02313 Fumarate reductase subunit D VY92_006050 PF01170 Putative RNA methylase family UPF0020 VY92_006050 PF02926 THUMP domain VY92_006050 PF10672 S-adenosylmethionine-dependent methyltransferase VY92_006055 PF01297 Zinc-uptake complex component A periplasmic VY92_006060 PF00899 ThiF family VY92_006065 PF03562 MltA specific insert domain VY92_006065 PF06725 3D domain VY92_006080 PF00313 'Cold-shock' DNA-binding domain VY92_006085 PF08245 Mur ligase middle domain VY92_006085 PF01225 Mur ligase family, catalytic domain VY92_006085 PF02875 Mur ligase family, glutamate ligase domain VY92_006090 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VY92_006095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VY92_006100 PF01722 BolA-like protein VY92_006105 PF13466 STAS domain VY92_006110 PF05494 MlaC protein VY92_006115 PF02470 MlaD protein VY92_006120 PF02405 Permease MlaE VY92_006125 PF00005 ABC transporter VY92_006135 PF06835 Lipopolysaccharide-assembly, LptC-related VY92_006140 PF03968 OstA-like protein VY92_006145 PF12399 Branched-chain amino acid ATP-binding cassette transporter VY92_006145 PF00005 ABC transporter VY92_006150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VY92_006155 PF03668 P-loop ATPase protein family VY92_006160 PF03786 D-mannonate dehydratase (UxuA) VY92_006165 PF07729 FCD domain VY92_006165 PF00392 Bacterial regulatory proteins, gntR family VY92_006170 PF13802 Galactose mutarotase-like VY92_006170 PF17137 Domain of unknown function (DUF5110) VY92_006170 PF16338 Domain of unknown function (DUF4968) VY92_006170 PF01055 Glycosyl hydrolases family 31 VY92_006175 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VY92_006180 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VY92_006190 PF03480 Bacterial extracellular solute-binding protein, family 7 VY92_006195 PF00106 short chain dehydrogenase VY92_006200 PF02614 Glucuronate isomerase VY92_006210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VY92_006215 PF00155 Aminotransferase class I and II VY92_006220 PF00266 Aminotransferase class-V VY92_006225 PF04363 Protein of unknown function (DUF496) VY92_006230 PF03895 YadA-like membrane anchor domain VY92_006230 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin VY92_006230 PF13018 Extended Signal Peptide of Type V secretion system VY92_006230 PF05662 Coiled stalk of trimeric autotransporter adhesin VY92_006235 PF02378 Phosphotransferase system, EIIC VY92_006235 PF00367 phosphotransferase system, EIIB VY92_006240 PF05191 Adenylate kinase, active site lid VY92_006245 PF00561 alpha/beta hydrolase fold VY92_006250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VY92_006250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VY92_006250 PF16582 Middle domain of thiamine pyrophosphate VY92_006255 PF00425 chorismate binding enzyme VY92_006260 PF00155 Aminotransferase class I and II VY92_006265 PF07840 FadR C-terminal domain VY92_006265 PF00392 Bacterial regulatory proteins, gntR family VY92_006270 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VY92_006275 PF02600 Disulfide bond formation protein DsbB VY92_006280 PF03741 Integral membrane protein TerC family VY92_006285 PF02976 DNA mismatch repair enzyme MutH VY92_006290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VY92_006290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VY92_006295 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VY92_006305 PF03458 UPF0126 domain VY92_006310 PF00171 Aldehyde dehydrogenase family VY92_006315 PF01842 ACT domain VY92_006315 PF00696 Amino acid kinase family VY92_006320 PF00581 Rhodanese-like domain VY92_006325 PF04143 Sulphur transport VY92_006330 PF00709 Adenylosuccinate synthetase VY92_006345 PF01791 DeoC/LacD family aldolase VY92_006350 PF01979 Amidohydrolase family VY92_006355 PF08220 DeoR-like helix-turn-helix domain VY92_006355 PF00455 DeoR C terminal sensor domain VY92_006365 PF00884 Sulfatase VY92_006370 PF13186 Iron-sulfur cluster-binding domain VY92_006370 PF04055 Radical SAM superfamily VY92_006380 PF07470 Glycosyl Hydrolase Family 88 VY92_006385 PF03610 PTS system fructose IIA component VY92_006385 PF03830 PTS system sorbose subfamily IIB component VY92_006390 PF03613 PTS system mannose/fructose/sorbose family IID component VY92_006395 PF03609 PTS system sorbose-specific iic component VY92_006400 PF03830 PTS system sorbose subfamily IIB component VY92_006405 PF01380 SIS domain VY92_006410 PF08013 Tagatose 6 phosphate kinase VY92_006415 PF00884 Sulfatase VY92_006430 PF09339 IclR helix-turn-helix domain VY92_006430 PF01614 Bacterial transcriptional regulator VY92_006435 PF00294 pfkB family carbohydrate kinase VY92_006440 PF01081 KDPG and KHG aldolase VY92_006445 PF03009 Glycerophosphoryl diester phosphodiesterase family VY92_006450 PF08402 TOBE domain VY92_006450 PF00005 ABC transporter VY92_006455 PF00528 Binding-protein-dependent transport system inner membrane component VY92_006460 PF00528 Binding-protein-dependent transport system inner membrane component VY92_006470 PF00328 Histidine phosphatase superfamily (branch 2) VY92_006480 PF01132 Elongation factor P (EF-P) OB domain VY92_006480 PF08207 Elongation factor P (EF-P) KOW-like domain VY92_006480 PF09285 Elongation factor P, C-terminal VY92_006485 PF04055 Radical SAM superfamily VY92_006490 PF08525 Opacity-associated protein A N-terminal motif VY92_006490 PF04225 Opacity-associated protein A LysM-like domain VY92_006495 PF04381 Putative exonuclease, RdgC VY92_006500 PF03807 NADP oxidoreductase coenzyme F420-dependent VY92_006500 PF14748 Pyrroline-5-carboxylate reductase dimerisation VY92_006505 PF12832 MFS_1 like family VY92_006510 PF02899 Phage integrase, N-terminal SAM-like domain VY92_006510 PF00589 Phage integrase family VY92_006515 PF00800 Prephenate dehydratase VY92_006515 PF01817 Chorismate mutase type II VY92_006520 PF16197 Ketoacyl-synthetase C-terminal extension VY92_006520 PF00109 Beta-ketoacyl synthase, N-terminal domain VY92_006520 PF08240 Alcohol dehydrogenase GroES-like domain VY92_006520 PF00107 Zinc-binding dehydrogenase VY92_006520 PF02801 Beta-ketoacyl synthase, C-terminal domain VY92_006520 PF08659 KR domain VY92_006520 PF00698 Acyl transferase domain VY92_006520 PF14765 Polyketide synthase dehydratase VY92_006520 PF00550 Phosphopantetheine attachment site VY92_006535 PF00106 short chain dehydrogenase VY92_006540 PF01965 DJ-1/PfpI family VY92_006550 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VY92_006555 PF00091 Tubulin/FtsZ family, GTPase domain VY92_006555 PF12327 FtsZ family, C-terminal domain VY92_006560 PF02491 SHS2 domain inserted in FTSA VY92_006565 PF03799 Cell division protein FtsQ VY92_006565 PF08478 POTRA domain, FtsQ-type VY92_006570 PF01820 D-ala D-ala ligase N-terminus VY92_006570 PF07478 D-ala D-ala ligase C-terminus VY92_006575 PF08245 Mur ligase middle domain VY92_006575 PF01225 Mur ligase family, catalytic domain VY92_006575 PF02875 Mur ligase family, glutamate ligase domain VY92_006580 PF03033 Glycosyltransferase family 28 N-terminal domain VY92_006580 PF04101 Glycosyltransferase family 28 C-terminal domain VY92_006585 PF01098 Cell cycle protein VY92_006590 PF02875 Mur ligase family, glutamate ligase domain VY92_006590 PF08245 Mur ligase middle domain VY92_006595 PF00953 Glycosyl transferase family 4 VY92_006595 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VY92_006600 PF08245 Mur ligase middle domain VY92_006600 PF02875 Mur ligase family, glutamate ligase domain VY92_006600 PF01225 Mur ligase family, catalytic domain VY92_006605 PF01225 Mur ligase family, catalytic domain VY92_006605 PF02875 Mur ligase family, glutamate ligase domain VY92_006605 PF08245 Mur ligase middle domain VY92_006610 PF00905 Penicillin binding protein transpeptidase domain VY92_006610 PF03717 Penicillin-binding Protein dimerisation domain VY92_006615 PF04999 Cell division protein FtsL VY92_006620 PF01795 MraW methylase family VY92_006625 PF02381 MraZ protein, putative antitoxin-like VY92_006635 PF05127 Helicase VY92_006635 PF13718 GNAT acetyltransferase 2 VY92_006635 PF17176 tRNA-binding domain VY92_006640 PF02130 Uncharacterized protein family UPF0054 VY92_006645 PF02562 PhoH-like protein VY92_006650 PF00149 Calcineurin-like phosphoesterase VY92_006655 PF01553 Acyltransferase VY92_006660 PF07732 Multicopper oxidase VY92_006665 PF13230 Glutamine amidotransferases class-II VY92_006670 PF03222 Tryptophan/tyrosine permease family VY92_006675 PF03313 Serine dehydratase alpha chain VY92_006675 PF03315 Serine dehydratase beta chain VY92_006680 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VY92_006680 PF01578 Cytochrome C assembly protein VY92_006685 PF08534 Redoxin VY92_006690 PF03918 Cytochrome C biogenesis protein VY92_006695 PF03918 Cytochrome C biogenesis protein VY92_006705 PF01336 OB-fold nucleic acid binding domain VY92_006705 PF14579 Helix-hairpin-helix motif VY92_006705 PF02811 PHP domain VY92_006705 PF07733 Bacterial DNA polymerase III alpha NTPase domain VY92_006705 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VY92_006710 PF03916 Polysulphide reductase, NrfD VY92_006715 PF13247 4Fe-4S dicluster domain VY92_006725 PF02335 Cytochrome c552 VY92_006730 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VY92_006730 PF04055 Radical SAM superfamily VY92_006735 PF03099 Biotin/lipoate A/B protein ligase family VY92_006740 PF04359 Protein of unknown function (DUF493) VY92_006745 PF07943 Penicillin-binding protein 5, C-terminal domain VY92_006745 PF00768 D-alanyl-D-alanine carboxypeptidase VY92_006750 PF03330 Lytic transglycolase VY92_006750 PF05036 Sporulation related domain VY92_006755 PF01098 Cell cycle protein VY92_006760 PF00905 Penicillin binding protein transpeptidase domain VY92_006760 PF03717 Penicillin-binding Protein dimerisation domain VY92_006765 PF02590 Predicted SPOUT methyltransferase VY92_006775 PF00270 DEAD/DEAH box helicase VY92_006775 PF00271 Helicase conserved C-terminal domain VY92_006780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VY92_006780 PF07498 Rho termination factor, N-terminal domain VY92_006780 PF07497 Rho termination factor, RNA-binding domain VY92_006785 PF07690 Major Facilitator Superfamily VY92_006795 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) VY92_006800 PF00485 Phosphoribulokinase / Uridine kinase family VY92_006805 PF00528 Binding-protein-dependent transport system inner membrane component VY92_006810 PF08402 TOBE domain VY92_006810 PF00005 ABC transporter VY92_006835 PF01177 Asp/Glu/Hydantoin racemase VY92_006840 PF00270 DEAD/DEAH box helicase VY92_006840 PF00271 Helicase conserved C-terminal domain VY92_006840 PF17191 RecG wedge domain VY92_006845 PF02824 TGS domain VY92_006845 PF04607 Region found in RelA / SpoT proteins VY92_006845 PF13291 ACT domain VY92_006850 PF01192 RNA polymerase Rpb6 VY92_006855 PF00625 Guanylate kinase VY92_006860 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VY92_006860 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VY92_006865 PF12762 ISXO2-like transposase domain VY92_006870 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VY92_006870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VY92_006875 PF02666 Phosphatidylserine decarboxylase VY92_006890 PF00202 Aminotransferase class-III VY92_006895 PF00155 Aminotransferase class I and II VY92_006900 PF04301 Protein of unknown function (DUF452) VY92_006905 PF08241 Methyltransferase domain VY92_006915 PF02620 Large ribosomal RNA subunit accumulation protein YceD VY92_006920 PF01783 Ribosomal L32p protein family VY92_006925 PF02504 Fatty acid synthesis protein VY92_006930 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VY92_006930 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VY92_006935 PF00698 Acyl transferase domain VY92_006945 PF00550 Phosphopantetheine attachment site VY92_006955 PF03605 Anaerobic c4-dicarboxylate membrane transporter VY92_006960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_006960 PF03466 LysR substrate binding domain VY92_006965 PF00248 Aldo/keto reductase family VY92_007000 PF02129 X-Pro dipeptidyl-peptidase (S15 family) VY92_007030 PF00436 Single-strand binding protein family VY92_007035 PF17755 UvrA DNA-binding domain VY92_007035 PF17760 UvrA interaction domain VY92_007045 PF04085 rod shape-determining protein MreC VY92_007050 PF04093 rod shape-determining protein MreD VY92_007055 PF01243 Pyridoxamine 5'-phosphate oxidase VY92_007060 PF06228 Haem utilisation ChuX/HutX VY92_007065 PF00593 TonB dependent receptor VY92_007065 PF07715 TonB-dependent Receptor Plug Domain VY92_007070 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB VY92_007070 PF08479 POTRA domain, ShlB-type VY92_007075 PF05860 haemagglutination activity domain VY92_007080 PF01406 tRNA synthetases class I (C) catalytic domain VY92_007080 PF09190 DALR domain VY92_007085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VY92_007090 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VY92_007090 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VY92_007095 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VY92_007100 PF00480 ROK family VY92_007105 PF04074 YhcH/YjgK/YiaL VY92_007110 PF01380 SIS domain VY92_007110 PF01418 Helix-turn-helix domain, rpiR family VY92_007115 PF00701 Dihydrodipicolinate synthetase family VY92_007120 PF06827 Zinc finger found in FPG and IleRS VY92_007120 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VY92_007120 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VY92_007125 PF00471 Ribosomal protein L33 VY92_007130 PF00830 Ribosomal L28 family VY92_007135 PF04002 RadC-like JAB domain VY92_007140 PF02441 Flavoprotein VY92_007140 PF04127 DNA / pantothenate metabolism flavoprotein VY92_007145 PF00692 dUTPase VY92_007150 PF00440 Bacterial regulatory proteins, tetR family VY92_007155 PF06794 Uncharacterised protein family (UPF0270) VY92_007160 PF13545 Crp-like helix-turn-helix domain VY92_007160 PF00027 Cyclic nucleotide-binding domain VY92_007165 PF02653 Branched-chain amino acid transport system / permease component VY92_007170 PF00005 ABC transporter VY92_007175 PF13407 Periplasmic binding protein domain VY92_007180 PF13407 Periplasmic binding protein domain VY92_007185 PF01494 FAD binding domain VY92_007190 PF01494 FAD binding domain VY92_007195 PF00557 Metallopeptidase family M24 VY92_007195 PF05195 Aminopeptidase P, N-terminal domain VY92_007200 PF03695 Uncharacterised protein family (UPF0149) VY92_007205 PF05164 Cell division protein ZapA VY92_007215 PF01812 5-formyltetrahydrofolate cyclo-ligase family VY92_007220 PF00589 Phage integrase family VY92_007220 PF02899 Phage integrase, N-terminal SAM-like domain VY92_007225 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VY92_007225 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VY92_007230 PF00230 Major intrinsic protein VY92_007235 PF01980 tRNA-methyltransferase O VY92_007235 PF18389 TrmO C-terminal domain VY92_007245 PF03737 Aldolase/RraA VY92_007250 PF00939 Sodium:sulfate symporter transmembrane region VY92_007255 PF01209 ubiE/COQ5 methyltransferase family VY92_007260 PF02036 SCP-2 sterol transfer family VY92_007265 PF03109 ABC1 family VY92_007270 PF02416 mttA/Hcf106 family VY92_007280 PF00902 Sec-independent protein translocase protein (TatC) VY92_007285 PF00490 Delta-aminolevulinic acid dehydratase VY92_007290 PF01026 TatD related DNase VY92_007305 PF03120 NAD-dependent DNA ligase OB-fold domain VY92_007305 PF00533 BRCA1 C Terminus (BRCT) domain VY92_007305 PF01653 NAD-dependent DNA ligase adenylation domain VY92_007305 PF12826 Helix-hairpin-helix motif VY92_007305 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VY92_007310 PF04354 ZipA, C-terminal FtsZ-binding domain VY92_007320 PF00291 Pyridoxal-phosphate dependent enzyme VY92_007325 PF00118 TCP-1/cpn60 chaperonin family VY92_007330 PF00166 Chaperonin 10 Kd subunit VY92_007380 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VY92_007410 PF00589 Phage integrase family VY92_007410 PF13356 Arm DNA-binding domain VY92_007420 PF00497 Bacterial extracellular solute-binding proteins, family 3 VY92_007420 PF01464 Transglycosylase SLT domain VY92_007425 PF13580 SIS domain VY92_007435 PF17757 UvrB interaction domain VY92_007435 PF00271 Helicase conserved C-terminal domain VY92_007435 PF00270 DEAD/DEAH box helicase VY92_007435 PF02559 CarD-like/TRCF domain VY92_007435 PF03461 TRCF domain VY92_007440 PF00293 NUDIX domain VY92_007450 PF10818 Protein of unknown function (DUF2547) VY92_007455 PF05258 Dna[CI] antecedent, DciA VY92_007460 PF02086 D12 class N6 adenine-specific DNA methyltransferase VY92_007465 PF01761 3-dehydroquinate synthase VY92_007470 PF01202 Shikimate kinase VY92_007475 PF00263 Bacterial type II and III secretion system protein VY92_007475 PF03958 Bacterial type II/III secretion system short domain VY92_007495 PF11104 Type IV pilus assembly protein PilM; VY92_007500 PF00905 Penicillin binding protein transpeptidase domain VY92_007500 PF17092 Penicillin-binding protein OB-like domain VY92_007500 PF00912 Transglycosylase VY92_007505 PF12762 ISXO2-like transposase domain VY92_007510 PF00175 Oxidoreductase NAD-binding domain VY92_007510 PF00042 Globin VY92_007510 PF00970 Oxidoreductase FAD-binding domain VY92_007515 PF02082 Transcriptional regulator VY92_007520 PF02092 Glycyl-tRNA synthetase beta subunit VY92_007520 PF05746 DALR anticodon binding domain VY92_007530 PF04480 Protein of unknown function (DUF559) VY92_007535 PF06250 YhcG PDDEXK nuclease domain VY92_007535 PF17761 DUF1016 N-terminal domain VY92_007550 PF02091 Glycyl-tRNA synthetase alpha subunit VY92_007570 PF00749 tRNA synthetases class I (E and Q), catalytic domain VY92_007580 PF00589 Phage integrase family VY92_007590 PF10548 P22AR C-terminal domain VY92_007590 PF02498 BRO family, N-terminal domain VY92_007615 PF00436 Single-strand binding protein family VY92_007720 PF07411 Domain of unknown function (DUF1508) VY92_007745 PF07102 Protein of unknown function (DUF1364) VY92_007785 PF00717 Peptidase S24-like VY92_007785 PF01726 LexA DNA binding domain VY92_007800 PF07411 Domain of unknown function (DUF1508) VY92_007845 PF00436 Single-strand binding protein family VY92_007860 PF04381 Putative exonuclease, RdgC VY92_007910 PF00589 Phage integrase family VY92_007930 PF01053 Cys/Met metabolism PLP-dependent enzyme VY92_007935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VY92_007935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VY92_007940 PF00085 Thioredoxin VY92_007945 PF02677 Epoxyqueuosine reductase QueH VY92_007950 PF00348 Polyprenyl synthetase VY92_007955 PF00829 Ribosomal prokaryotic L21 protein VY92_007960 PF01016 Ribosomal L27 protein VY92_007965 PF00892 EamA-like transporter family VY92_007970 PF01018 GTP1/OBG VY92_007970 PF01926 50S ribosome-binding GTPase VY92_008035 PF00545 ribonuclease VY92_008060 PF00545 ribonuclease VY92_008070 PF05860 haemagglutination activity domain VY92_008070 PF13018 Extended Signal Peptide of Type V secretion system VY92_008070 PF13332 Hemagglutinin repeat VY92_008070 PF04829 Pre-toxin domain with VENN motif VY92_008070 PF04829 Pre-toxin domain with VENN motif VY92_008070 PF13332 Hemagglutinin repeat VY92_008070 PF05860 haemagglutination activity domain VY92_008070 PF13018 Extended Signal Peptide of Type V secretion system VY92_008075 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB VY92_008075 PF08479 POTRA domain, ShlB-type VY92_008075 PF17287 POTRA domain VY92_008080 PF03601 Conserved hypothetical protein 698 VY92_008085 PF01047 MarR family VY92_008090 PF05662 Coiled stalk of trimeric autotransporter adhesin VY92_008090 PF03895 YadA-like membrane anchor domain VY92_008090 PF05658 Head domain of trimeric autotransporter adhesin VY92_008100 PF01047 MarR family VY92_008105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VY92_008105 PF00529 HlyD membrane-fusion protein of T1SS VY92_008110 PF07690 Major Facilitator Superfamily VY92_008115 PF08032 RNA 2'-O ribose methyltransferase substrate binding VY92_008115 PF00588 SpoU rRNA Methylase family VY92_008120 PF00773 RNB domain VY92_008120 PF08206 Ribonuclease B OB domain VY92_008120 PF08461 Ribonuclease R winged-helix domain VY92_008120 PF17876 Cold shock domain VY92_008120 PF00575 S1 RNA binding domain VY92_008125 PF01926 50S ribosome-binding GTPase VY92_008125 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VY92_008130 PF07650 KH domain VY92_008130 PF01926 50S ribosome-binding GTPase VY92_008135 PF14622 Ribonuclease-III-like VY92_008135 PF00035 Double-stranded RNA binding motif VY92_008140 PF10502 Signal peptidase, peptidase S26 VY92_008145 PF06421 GTP-binding protein LepA C-terminus VY92_008145 PF03144 Elongation factor Tu domain 2 VY92_008145 PF00009 Elongation factor Tu GTP binding domain VY92_008145 PF00679 Elongation factor G C-terminus VY92_008150 PF01228 Glycine radical VY92_008155 PF03167 Uracil DNA glycosylase superfamily VY92_008160 PF03883 Peroxide stress protein YaaA VY92_008170 PF01545 Cation efflux family VY92_008170 PF16916 Dimerisation domain of Zinc Transporter VY92_008175 PF00365 Phosphofructokinase VY92_008180 PF00334 Nucleoside diphosphate kinase VY92_008185 PF00883 Cytosol aminopeptidase family, catalytic domain VY92_008185 PF12404 Peptidase VY92_008195 PF01176 Translation initiation factor 1A / IF-1 VY92_008200 PF00512 His Kinase A (phospho-acceptor) domain VY92_008200 PF00989 PAS fold VY92_008200 PF00072 Response regulator receiver domain VY92_008200 PF01627 Hpt domain VY92_008200 PF18415 Histidine kinase receptor ArcB trans-membrane domain VY92_008200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VY92_008205 PF01758 Sodium Bile acid symporter family VY92_008210 PF07690 Major Facilitator Superfamily VY92_008215 PF01370 NAD dependent epimerase/dehydratase family VY92_008225 PF00860 Permease family VY92_008235 PF01725 Ham1 family VY92_008240 PF06969 HemN C-terminal domain VY92_008240 PF04055 Radical SAM superfamily VY92_008245 PF02664 S-Ribosylhomocysteinase (LuxS) VY92_008255 PF14602 Hexapeptide repeat of succinyl-transferase VY92_008255 PF12464 Maltose acetyltransferase VY92_008260 PF13419 Haloacid dehalogenase-like hydrolase VY92_008270 PF02542 YgbB family VY92_008275 PF01142 tRNA pseudouridine synthase D (TruD) VY92_008280 PF01975 Survival protein SurE VY92_008285 PF09335 SNARE associated Golgi protein VY92_008295 PF01551 Peptidase family M23 VY92_008295 PF01476 LysM domain VY92_008305 PF01435 Peptidase family M48 VY92_008305 PF07720 Tetratricopeptide repeat VY92_008310 PF00719 Inorganic pyrophosphatase VY92_008315 PF03222 Tryptophan/tyrosine permease family VY92_008320 PF08241 Methyltransferase domain VY92_008325 PF08029 HisG, C-terminal domain VY92_008325 PF01634 ATP phosphoribosyltransferase VY92_008330 PF00815 Histidinol dehydrogenase VY92_008340 PF00155 Aminotransferase class I and II VY92_008345 PF00475 Imidazoleglycerol-phosphate dehydratase VY92_008350 PF17761 DUF1016 N-terminal domain VY92_008350 PF06250 YhcG PDDEXK nuclease domain VY92_008355 PF00117 Glutamine amidotransferase class-I VY92_008360 PF00578 AhpC/TSA family VY92_008365 PF00977 Histidine biosynthesis protein VY92_008370 PF00977 Histidine biosynthesis protein VY92_008380 PF01502 Phosphoribosyl-AMP cyclohydrolase VY92_008380 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VY92_008385 PF04345 Chorismate lyase VY92_008395 PF00860 Permease family VY92_008400 PF00308 Bacterial dnaA protein VY92_008405 PF00694 Aconitase C-terminal domain VY92_008410 PF00330 Aconitase family (aconitate hydratase) VY92_008415 PF00180 Isocitrate/isopropylmalate dehydrogenase VY92_008420 PF08502 LeuA allosteric (dimerisation) domain VY92_008420 PF00682 HMGL-like VY92_008425 PF00005 ABC transporter VY92_008430 PF03379 CcmB protein VY92_008435 PF01578 Cytochrome C assembly protein VY92_008440 PF04995 Heme exporter protein D (CcmD) VY92_008445 PF03100 CcmE VY92_008450 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VY92_008450 PF01578 Cytochrome C assembly protein VY92_008455 PF08534 Redoxin VY92_008460 PF03918 Cytochrome C biogenesis protein VY92_008465 PF03918 Cytochrome C biogenesis protein VY92_008470 PF02653 Branched-chain amino acid transport system / permease component VY92_008475 PF00005 ABC transporter VY92_008480 PF13407 Periplasmic binding protein domain VY92_008485 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VY92_008485 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VY92_008490 PF10509 Galactokinase galactose-binding signature VY92_008490 PF08544 GHMP kinases C terminal VY92_008490 PF00288 GHMP kinases N terminal domain VY92_008495 PF01263 Aldose 1-epimerase VY92_008505 PF04055 Radical SAM superfamily VY92_008510 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) VY92_008515 PF01228 Glycine radical VY92_008515 PF02901 Pyruvate formate lyase-like VY92_008520 PF01226 Formate/nitrite transporter VY92_008525 PF01230 HIT domain VY92_008535 PF00933 Glycosyl hydrolase family 3 N terminal domain VY92_008540 PF05958 tRNA (Uracil-5-)-methyltransferase VY92_008545 PF01794 Ferric reductase like transmembrane component VY92_008550 PF00174 Oxidoreductase molybdopterin binding domain VY92_008555 PF05036 Sporulation related domain VY92_008560 PF18074 Primosomal protein N C-terminal domain VY92_008560 PF17764 3′ DNA-binding domain (3′BD) VY92_008560 PF00271 Helicase conserved C-terminal domain VY92_008560 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VY92_008560 PF00270 DEAD/DEAH box helicase VY92_008565 PF01197 Ribosomal protein L31 VY92_008570 PF03471 Transporter associated domain VY92_008570 PF01595 Cyclin M transmembrane N-terminal domain VY92_008570 PF00571 CBS domain VY92_008575 PF07509 Protein of unknown function (DUF1523) VY92_008580 PF01026 TatD related DNase VY92_008585 PF09115 DNA polymerase III, delta subunit, C terminal VY92_008590 PF02223 Thymidylate kinase VY92_008595 PF02618 YceG-like family VY92_008600 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VY92_008600 PF08463 EcoEI R protein C-terminal VY92_008600 PF04851 Type III restriction enzyme, res subunit VY92_008600 PF00271 Helicase conserved C-terminal domain VY92_008605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VY92_008605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VY92_008610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VY92_008620 PF01145 SPFH domain / Band 7 family VY92_008625 PF01145 SPFH domain / Band 7 family VY92_008630 PF01648 4'-phosphopantetheinyl transferase superfamily VY92_008640 PF00183 Hsp90 protein VY92_008640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VY92_008645 PF02462 Opacity family porin protein VY92_008650 PF17283 SprT-like zinc ribbon domain VY92_008650 PF10263 SprT-like family VY92_008655 PF01773 Na+ dependent nucleoside transporter N-terminus VY92_008655 PF07662 Na+ dependent nucleoside transporter C-terminus VY92_008655 PF07670 Nucleoside recognition VY92_008660 PF01676 Metalloenzyme superfamily VY92_008665 PF01048 Phosphorylase superfamily VY92_008675 PF01207 Dihydrouridine synthase (Dus) VY92_008695 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VY92_008695 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VY92_008700 PF00186 Dihydrofolate reductase VY92_008720 PF00580 UvrD/REP helicase N-terminal domain VY92_008720 PF13361 UvrD-like helicase C-terminal domain VY92_008725 PF07119 Protein of unknown function (DUF1375) VY92_008730 PF00113 Enolase, C-terminal TIM barrel domain VY92_008730 PF03952 Enolase, N-terminal domain VY92_008740 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VY92_008745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VY92_008750 PF00883 Cytosol aminopeptidase family, catalytic domain VY92_008750 PF02789 Cytosol aminopeptidase family, N-terminal domain VY92_008755 PF01112 Asparaginase VY92_008760 PF02378 Phosphotransferase system, EIIC VY92_008765 PF03932 CutC family VY92_008770 PF00873 AcrB/AcrD/AcrF family VY92_008775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VY92_008785 PF01272 Transcription elongation factor, GreA/GreB, C-term VY92_008785 PF03449 Transcription elongation factor, N-terminal VY92_008800 PF00575 S1 RNA binding domain VY92_008800 PF16921 Tex protein YqgF-like domain VY92_008800 PF17674 HHH domain VY92_008800 PF09371 Tex-like protein N-terminal domain VY92_008805 PF05525 Branched-chain amino acid transport protein VY92_008810 PF00581 Rhodanese-like domain VY92_008815 PF01040 UbiA prenyltransferase family VY92_008820 PF00227 Proteasome subunit VY92_008825 PF10431 C-terminal, D2-small domain, of ClpB protein VY92_008825 PF00004 ATPase family associated with various cellular activities (AAA) VY92_008825 PF07724 AAA domain (Cdc48 subfamily) VY92_008830 PF03603 DNA polymerase III psi subunit VY92_008835 PF00583 Acetyltransferase (GNAT) family VY92_008840 PF00501 AMP-binding enzyme VY92_008845 PF00206 Lyase VY92_008845 PF10415 Fumarase C C-terminus VY92_008850 PF07724 AAA domain (Cdc48 subfamily) VY92_008850 PF10431 C-terminal, D2-small domain, of ClpB protein VY92_008850 PF06689 ClpX C4-type zinc finger VY92_008855 PF00574 Clp protease VY92_008860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VY92_008860 PF05698 Bacterial trigger factor protein (TF) C-terminus VY92_008860 PF05697 Bacterial trigger factor protein (TF) VY92_008880 PF02028 BCCT, betaine/carnitine/choline family transporter VY92_008885 PF02080 TrkA-C domain VY92_008885 PF03471 Transporter associated domain VY92_008885 PF00999 Sodium/hydrogen exchanger family VY92_008890 PF01612 3'-5' exonuclease VY92_008890 PF01367 5'-3' exonuclease, C-terminal SAM fold VY92_008890 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VY92_008890 PF00476 DNA polymerase family A VY92_008895 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VY92_008900 PF05068 Mannitol repressor VY92_008905 PF08125 Mannitol dehydrogenase C-terminal domain VY92_008905 PF01232 Mannitol dehydrogenase Rossmann domain VY92_008910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VY92_008910 PF02378 Phosphotransferase system, EIIC VY92_008910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VY92_008915 PF03544 Gram-negative bacterial TonB protein C-terminal VY92_008920 PF02472 Biopolymer transport protein ExbD/TolR VY92_008925 PF01618 MotA/TolQ/ExbB proton channel family VY92_008930 PF01595 Cyclin M transmembrane N-terminal domain VY92_008930 PF03471 Transporter associated domain VY92_008930 PF00571 CBS domain VY92_008935 PF01578 Cytochrome C assembly protein VY92_008940 PF02978 Signal peptide binding domain VY92_008940 PF02881 SRP54-type protein, helical bundle domain VY92_008940 PF00448 SRP54-type protein, GTPase domain VY92_008945 PF17347 Family of unknown function (DUF5377) VY92_008950 PF03889 Alternative ribosome-rescue factor A VY92_008955 PF03960 ArsC family VY92_008960 PF01594 AI-2E family transporter VY92_008965 PF00005 ABC transporter VY92_008970 PF00497 Bacterial extracellular solute-binding proteins, family 3 VY92_008975 PF00528 Binding-protein-dependent transport system inner membrane component VY92_008980 PF00528 Binding-protein-dependent transport system inner membrane component VY92_008985 PF00571 CBS domain VY92_008985 PF03471 Transporter associated domain VY92_008990 PF00795 Carbon-nitrogen hydrolase VY92_008995 PF02772 S-adenosylmethionine synthetase, central domain VY92_008995 PF02773 S-adenosylmethionine synthetase, C-terminal domain VY92_008995 PF00438 S-adenosylmethionine synthetase, N-terminal domain VY92_009005 PF00120 Glutamine synthetase, catalytic domain VY92_009005 PF03951 Glutamine synthetase, beta-Grasp domain VY92_009015 PF01061 ABC-2 type transporter VY92_009020 PF00005 ABC transporter VY92_009025 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) VY92_009040 PF01370 NAD dependent epimerase/dehydratase family VY92_009045 PF16363 GDP-mannose 4,6 dehydratase VY92_009050 PF01050 Mannose-6-phosphate isomerase VY92_009050 PF00483 Nucleotidyl transferase VY92_009055 PF04751 Protein of unknown function (DUF615) VY92_009060 PF01523 Putative modulator of DNA gyrase VY92_009065 PF00156 Phosphoribosyl transferase domain VY92_009070 PF17274 Family of unknown function (DUF5339) VY92_009075 PF01654 Cytochrome bd terminal oxidase subunit I VY92_009080 PF02322 Cytochrome bd terminal oxidase subunit II VY92_009090 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) VY92_009100 PF03061 Thioesterase superfamily VY92_009105 PF01618 MotA/TolQ/ExbB proton channel family VY92_009110 PF02472 Biopolymer transport protein ExbD/TolR VY92_009115 PF06519 TolA C-terminal VY92_009120 PF04052 TolB amino-terminal domain VY92_009120 PF07676 WD40-like Beta Propeller Repeat VY92_009125 PF00691 OmpA family VY92_009140 PF07963 Prokaryotic N-terminal methylation motif VY92_009160 PF17946 RecC C-terminal domain VY92_009170 PF00596 Class II Aldolase and Adducin N-terminal domain VY92_009175 PF01261 Xylose isomerase-like TIM barrel VY92_009180 PF08220 DeoR-like helix-turn-helix domain VY92_009180 PF00455 DeoR C terminal sensor domain VY92_009190 PF03611 PTS system sugar-specific permease component VY92_009195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VY92_009200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VY92_009205 PF03480 Bacterial extracellular solute-binding protein, family 7 VY92_009210 PF01344 Kelch motif VY92_009215 PF04977 Septum formation initiator VY92_009220 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VY92_009270 PF12724 Flavodoxin domain VY92_009275 PF02386 Cation transport protein VY92_009285 PF01206 Sulfurtransferase TusA VY92_009290 PF00300 Histidine phosphatase superfamily (branch 1) VY92_009295 PF01551 Peptidase family M23 VY92_009300 PF04748 Divergent polysaccharide deacetylase VY92_009305 PF00156 Phosphoribosyl transferase domain VY92_009315 PF04542 Sigma-70 region 2 VY92_009315 PF00140 Sigma-70 factor, region 1.2 VY92_009315 PF04545 Sigma-70, region 4 VY92_009325 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VY92_009325 PF01565 FAD binding domain VY92_009330 PF00672 HAMP domain VY92_009330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VY92_009330 PF07730 Histidine kinase VY92_009330 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VY92_009335 PF03927 NapD protein VY92_009340 PF01568 Molydopterin dinucleotide binding domain VY92_009340 PF10518 TAT (twin-arginine translocation) pathway signal sequence VY92_009340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VY92_009340 PF00384 Molybdopterin oxidoreductase VY92_009345 PF12800 4Fe-4S binding domain VY92_009345 PF12838 4Fe-4S dicluster domain VY92_009350 PF12801 4Fe-4S binding domain VY92_009350 PF12837 4Fe-4S binding domain VY92_009355 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VY92_009360 PF03264 NapC/NirT cytochrome c family, N-terminal region VY92_009365 PF01138 3' exoribonuclease family, domain 1 VY92_009365 PF00575 S1 RNA binding domain VY92_009365 PF03725 3' exoribonuclease family, domain 2 VY92_009365 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VY92_009365 PF00013 KH domain VY92_009380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VY92_009390 PF06877 Regulator of ribonuclease activity B VY92_009395 PF02080 TrkA-C domain VY92_009395 PF02254 TrkA-N domain VY92_009405 PF00551 Formyl transferase VY92_009405 PF02911 Formyl transferase, C-terminal domain VY92_009410 PF02661 Fic/DOC family VY92_009410 PF13784 Fic/DOC family N-terminal VY92_009415 PF07992 Pyridine nucleotide-disulphide oxidoreductase VY92_009420 PF00294 pfkB family carbohydrate kinase VY92_009430 PF01116 Fructose-bisphosphate aldolase class-II VY92_009435 PF00162 Phosphoglycerate kinase VY92_009440 PF00445 Ribonuclease T2 family VY92_009445 PF00037 4Fe-4S binding domain VY92_009450 PF00588 SpoU rRNA Methylase family VY92_009450 PF08032 RNA 2'-O ribose methyltransferase substrate binding VY92_009455 PF13091 PLD-like domain VY92_009465 PF00881 Nitroreductase family VY92_009470 PF03605 Anaerobic c4-dicarboxylate membrane transporter VY92_009475 PF00581 Rhodanese-like domain VY92_009480 PF02556 Preprotein translocase subunit SecB VY92_009485 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VY92_009485 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VY92_009490 PF06426 Serine acetyltransferase, N-terminal VY92_009490 PF00132 Bacterial transferase hexapeptide (six repeats) VY92_009495 PF08501 Shikimate dehydrogenase substrate binding domain VY92_009500 PF00884 Sulfatase VY92_009500 PF08019 Phosphoethanolamine transferase EptA/EptB VY92_009505 PF00376 MerR family regulatory protein VY92_009505 PF09278 MerR, DNA binding VY92_009520 PF00390 Malic enzyme, N-terminal domain VY92_009520 PF01515 Phosphate acetyl/butaryl transferase VY92_009520 PF03949 Malic enzyme, NAD binding domain VY92_009525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VY92_009525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VY92_009530 PF00884 Sulfatase VY92_009535 PF01245 Ribosomal protein L19 VY92_009540 PF01746 tRNA (Guanine-1)-methyltransferase VY92_009545 PF01782 RimM N-terminal domain VY92_009545 PF05239 PRC-barrel domain VY92_009550 PF00886 Ribosomal protein S16 VY92_009555 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VY92_009560 PF00535 Glycosyl transferase family 2 VY92_009570 PF03610 PTS system fructose IIA component VY92_009570 PF03830 PTS system sorbose subfamily IIB component VY92_009575 PF03609 PTS system sorbose-specific iic component VY92_009580 PF03613 PTS system mannose/fructose/sorbose family IID component VY92_009590 PF02655 ATP-grasp domain VY92_009590 PF18419 ATP-grasp-like domain VY92_009590 PF04262 Glutamate-cysteine ligase VY92_009595 PF00111 2Fe-2S iron-sulfur cluster binding domain VY92_009600 PF00012 Hsp70 protein VY92_009605 PF07743 HSCB C-terminal oligomerisation domain VY92_009610 PF07743 HSCB C-terminal oligomerisation domain VY92_009615 PF01521 Iron-sulphur cluster biosynthesis VY92_009620 PF01592 NifU-like N terminal domain VY92_009625 PF00266 Aminotransferase class-V VY92_009630 PF02082 Transcriptional regulator VY92_009635 PF00588 SpoU rRNA Methylase family VY92_009640 PF00459 Inositol monophosphatase family VY92_009645 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VY92_009650 PF04261 Dyp-type peroxidase family VY92_009655 PF05175 Methyltransferase small domain VY92_009660 PF00271 Helicase conserved C-terminal domain VY92_009660 PF00270 DEAD/DEAH box helicase VY92_009665 PF01118 Semialdehyde dehydrogenase, NAD binding domain VY92_009665 PF02774 Semialdehyde dehydrogenase, dimerisation domain VY92_009670 PF03887 YfbU domain VY92_009675 PF04333 MlaA lipoprotein VY92_009680 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VY92_009680 PF00117 Glutamine amidotransferase class-I VY92_009685 PF02567 Phenazine biosynthesis-like protein VY92_009690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VY92_009690 PF02142 MGS-like domain VY92_009690 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VY92_009695 PF00543 Nitrogen regulatory protein P-II VY92_009700 PF00909 Ammonium Transporter Family VY92_009700 PF00909 Ammonium Transporter Family VY92_009705 PF12762 ISXO2-like transposase domain VY92_009710 PF04393 Protein of unknown function (DUF535) VY92_009715 PF05872 Bacterial protein of unknown function (DUF853) VY92_009720 PF13525 Outer membrane lipoprotein VY92_009725 PF01479 S4 domain VY92_009725 PF00849 RNA pseudouridylate synthase VY92_009735 PF03702 Anhydro-N-acetylmuramic acid kinase VY92_009740 PF01925 Sulfite exporter TauE/SafE VY92_009750 PF12804 MobA-like NTP transferase domain VY92_009750 PF00132 Bacterial transferase hexapeptide (six repeats) VY92_009755 PF00924 Mechanosensitive ion channel VY92_009755 PF05552 Conserved TM helix VY92_009760 PF02541 Ppx/GppA phosphatase family VY92_009765 PF04357 TamB, inner membrane protein subunit of TAM complex VY92_009775 PF03023 Lipid II flippase MurJ VY92_009780 PF01649 Ribosomal protein S20 VY92_009785 PF10144 Bacterial virulence factor haemolysin VY92_009790 PF18429 Domain of unknown function (DUF5609) VY92_009795 PF04461 Protein of unknown function (DUF520) VY92_009800 PF04445 Putative SAM-dependent methyltransferase VY92_009805 PF05958 tRNA (Uracil-5-)-methyltransferase VY92_009810 PF04219 Protein of unknown function, DUF VY92_009815 PF01323 DSBA-like thioredoxin domain VY92_009820 PF06288 Protein of unknown function (DUF1040) VY92_009825 PF12804 MobA-like NTP transferase domain VY92_009830 PF01571 Aminomethyltransferase folate-binding domain VY92_009835 PF03755 YicC-like family, N-terminal region VY92_009835 PF08340 Domain of unknown function (DUF1732) VY92_009840 PF01138 3' exoribonuclease family, domain 1 VY92_009840 PF03725 3' exoribonuclease family, domain 2 VY92_009845 PF00156 Phosphoribosyl transferase domain VY92_009850 PF05099 Tellurite resistance protein TerB VY92_009850 PF00226 DnaJ domain VY92_009855 PF01207 Dihydrouridine synthase (Dus) VY92_009865 PF00884 Sulfatase VY92_009865 PF11893 Domain of unknown function (DUF3413) VY92_009870 PF07208 Protein of unknown function (DUF1414) VY92_009875 PF04245 37-kD nucleoid-associated bacterial protein VY92_009880 PF04355 SmpA / OmlA family VY92_009885 PF00072 Response regulator receiver domain VY92_009885 PF00486 Transcriptional regulatory protein, C terminal VY92_009890 PF01184 GPR1/FUN34/yaaH family VY92_009895 PF04997 RNA polymerase Rpb1, domain 1 VY92_009895 PF00623 RNA polymerase Rpb1, domain 2 VY92_009895 PF04983 RNA polymerase Rpb1, domain 3 VY92_009895 PF05000 RNA polymerase Rpb1, domain 4 VY92_009895 PF04998 RNA polymerase Rpb1, domain 5 VY92_009900 PF00562 RNA polymerase Rpb2, domain 6 VY92_009900 PF04563 RNA polymerase beta subunit VY92_009900 PF04560 RNA polymerase Rpb2, domain 7 VY92_009900 PF04561 RNA polymerase Rpb2, domain 2 VY92_009900 PF10385 RNA polymerase beta subunit external 1 domain VY92_009900 PF04565 RNA polymerase Rpb2, domain 3 VY92_009905 PF16320 Ribosomal protein L7/L12 dimerisation domain VY92_009905 PF00542 Ribosomal protein L7/L12 C-terminal domain VY92_009910 PF00466 Ribosomal protein L10 VY92_009915 PF00687 Ribosomal protein L1p/L10e family VY92_009920 PF00298 Ribosomal protein L11, RNA binding domain VY92_009920 PF03946 Ribosomal protein L11, N-terminal domain VY92_009940 PF02357 Transcription termination factor nusG VY92_009940 PF00467 KOW motif VY92_009945 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VY92_009950 PF03143 Elongation factor Tu C-terminal domain VY92_009950 PF00009 Elongation factor Tu GTP binding domain VY92_009950 PF03144 Elongation factor Tu domain 2 VY92_009955 PF14492 Elongation Factor G, domain II VY92_009955 PF00679 Elongation factor G C-terminus VY92_009955 PF03764 Elongation factor G, domain IV VY92_009955 PF03144 Elongation factor Tu domain 2 VY92_009955 PF00009 Elongation factor Tu GTP binding domain VY92_009960 PF00177 Ribosomal protein S7p/S5e VY92_009965 PF00164 Ribosomal protein S12/S23 VY92_009980 PF02635 DsrE/DsrF-like family VY92_009985 PF02635 DsrE/DsrF-like family VY92_009995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VY92_009995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VY92_010000 PF04102 SlyX VY92_010005 PF08534 Redoxin VY92_010005 PF00462 Glutaredoxin VY92_010010 PF03466 LysR substrate binding domain VY92_010010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_010015 PF00440 Bacterial regulatory proteins, tetR family VY92_010020 PF12146 Serine aminopeptidase, S33 VY92_010025 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VY92_010035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VY92_010035 PF00205 Thiamine pyrophosphate enzyme, central domain VY92_010035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VY92_010045 PF00920 Dehydratase family VY92_010055 PF00291 Pyridoxal-phosphate dependent enzyme VY92_010055 PF00585 C-terminal regulatory domain of Threonine dehydratase VY92_010075 PF03590 Aspartate-ammonia ligase VY92_010085 PF03498 Cytolethal distending toxin A/C domain VY92_010090 PF03372 Endonuclease/Exonuclease/phosphatase family VY92_010095 PF03498 Cytolethal distending toxin A/C domain VY92_010100 PF04453 LPS transport system D VY92_010100 PF03968 OstA-like protein VY92_010105 PF03352 Methyladenine glycosylase VY92_010110 PF00923 Transaldolase/Fructose-6-phosphate aldolase VY92_010115 PF07274 Protein of unknown function (DUF1440) VY92_010120 PF00293 NUDIX domain VY92_010125 PF00849 RNA pseudouridylate synthase VY92_010130 PF00180 Isocitrate/isopropylmalate dehydrogenase VY92_010135 PF02954 Bacterial regulatory protein, Fis family VY92_010140 PF01207 Dihydrouridine synthase (Dus) VY92_010150 PF00474 Sodium:solute symporter family VY92_010155 PF06196 Protein of unknown function (DUF997) VY92_010165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VY92_010165 PF02785 Biotin carboxylase C-terminal domain VY92_010165 PF00289 Biotin carboxylase, N-terminal domain VY92_010175 PF01220 Dehydroquinase class II VY92_010190 PF00378 Enoyl-CoA hydratase/isomerase VY92_010215 PF01479 S4 domain VY92_010215 PF00849 RNA pseudouridylate synthase VY92_010220 PF09107 Elongation factor SelB, winged helix VY92_010220 PF09106 Elongation factor SelB, winged helix VY92_010220 PF03144 Elongation factor Tu domain 2 VY92_010220 PF00009 Elongation factor Tu GTP binding domain VY92_010230 PF04320 Protein with unknown function (DUF469) VY92_010235 PF02390 Putative methyltransferase VY92_010240 PF01078 Magnesium chelatase, subunit ChlI VY92_010240 PF13335 Magnesium chelatase, subunit ChlI C-terminal VY92_010245 PF00282 Pyridoxal-dependent decarboxylase conserved domain VY92_010250 PF00202 Aminotransferase class-III VY92_010260 PF07219 HemY protein N-terminus VY92_010265 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VY92_010270 PF02602 Uroporphyrinogen-III synthase HemD VY92_010275 PF03900 Porphobilinogen deaminase, C-terminal domain VY92_010275 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VY92_010280 PF12633 Adenylate cyclase NT domain VY92_010280 PF01295 Adenylate cyclase, class-I VY92_010285 PF00196 Bacterial regulatory proteins, luxR family VY92_010285 PF00072 Response regulator receiver domain VY92_010290 PF02580 D-Tyr-tRNA(Tyr) deacylase VY92_010295 PF03631 Virulence factor BrkB VY92_010300 PF02810 SEC-C motif VY92_010305 PF01614 Bacterial transcriptional regulator VY92_010305 PF09339 IclR helix-turn-helix domain VY92_010310 PF02615 Malate/L-lactate dehydrogenase VY92_010315 PF04074 YhcH/YjgK/YiaL VY92_010320 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VY92_010325 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VY92_010330 PF03480 Bacterial extracellular solute-binding protein, family 7 VY92_010335 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VY92_010335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VY92_010340 PF01261 Xylose isomerase-like TIM barrel VY92_010345 PF00596 Class II Aldolase and Adducin N-terminal domain VY92_010350 PF02779 Transketolase, pyrimidine binding domain VY92_010350 PF02780 Transketolase, C-terminal domain VY92_010350 PF00456 Transketolase, thiamine diphosphate binding domain VY92_010355 PF00005 ABC transporter VY92_010360 PF18075 FtsX extracellular domain VY92_010365 PF02594 Uncharacterised ACR, YggU family COG1872 VY92_010370 PF02325 YGGT family VY92_010375 PF01544 CorA-like Mg2+ transporter protein VY92_010385 PF00589 Phage integrase family VY92_010410 PF01734 Patatin-like phospholipase VY92_010420 PF02796 Helix-turn-helix domain of resolvase VY92_010420 PF00239 Resolvase, N terminal domain VY92_010430 PF08681 Protein of unknown function (DUF1778) VY92_010445 PF13362 Toprim domain VY92_010445 PF18818 Metallopeptidase superfamily domain VY92_010445 PF08401 Domain of unknown function (DUF1738) VY92_010645 PF01751 Toprim domain VY92_010645 PF01131 DNA topoisomerase VY92_010670 PF00440 Bacterial regulatory proteins, tetR family VY92_010675 PF07690 Major Facilitator Superfamily VY92_010680 PF02909 Tetracyclin repressor-like, C-terminal domain VY92_010680 PF00440 Bacterial regulatory proteins, tetR family VY92_010700 PF03616 Sodium/glutamate symporter VY92_010715 PF01609 Transposase DDE domain VY92_010715 PF05598 Transposase domain (DUF772) VY92_010725 PF00302 Chloramphenicol acetyltransferase VY92_010730 PF01609 Transposase DDE domain VY92_010730 PF05598 Transposase domain (DUF772) VY92_010740 PF00436 Single-strand binding protein family VY92_010775 PF03796 DnaB-like helicase C terminal domain VY92_010775 PF00772 DnaB-like helicase N terminal domain VY92_010795 PF01464 Transglycosylase SLT domain VY92_010795 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VY92_010800 PF04362 Bacterial Fe(2+) trafficking VY92_010805 PF00730 HhH-GPD superfamily base excision DNA repair protein VY92_010805 PF14815 NUDIX domain VY92_010810 PF13407 Periplasmic binding protein domain VY92_010815 PF00005 ABC transporter VY92_010820 PF02653 Branched-chain amino acid transport system / permease component VY92_010825 PF03652 Holliday junction resolvase VY92_010830 PF02622 Uncharacterized ACR, COG1678 VY92_010835 PF04452 RNA methyltransferase VY92_010845 PF03608 PTS system enzyme II sorbitol-specific factor VY92_010850 PF07663 Sorbitol phosphotransferase enzyme II C-terminus VY92_010850 PF03612 Sorbitol phosphotransferase enzyme II N-terminus VY92_010855 PF03829 PTS system glucitol/sorbitol-specific IIA component VY92_010860 PF00106 short chain dehydrogenase VY92_010865 PF06923 Glucitol operon activator protein (GutM) VY92_010870 PF08220 DeoR-like helix-turn-helix domain VY92_010870 PF00455 DeoR C terminal sensor domain VY92_010880 PF04356 Protein of unknown function (DUF489) VY92_010885 PF00206 Lyase VY92_010885 PF08328 Adenylosuccinate lyase C-terminal VY92_010890 PF03553 Na+/H+ antiporter family VY92_010895 PF00155 Aminotransferase class I and II VY92_010905 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VY92_010905 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VY92_010910 PF12833 Helix-turn-helix domain VY92_010915 PF01926 50S ribosome-binding GTPase VY92_010920 PF06418 CTP synthase N-terminus VY92_010920 PF00117 Glutamine amidotransferase class-I VY92_010950 PF04994 TfoX C-terminal domain VY92_010950 PF04993 TfoX N-terminal domain VY92_010955 PF03350 Uncharacterized protein family, UPF0114 VY92_010960 PF02646 RmuC family VY92_010965 PF02545 Maf-like protein VY92_010970 PF01396 Topoisomerase DNA binding C4 zinc finger VY92_010975 PF01300 Telomere recombination VY92_010980 PF08501 Shikimate dehydrogenase substrate binding domain VY92_010980 PF01488 Shikimate / quinate 5-dehydrogenase VY92_010980 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VY92_010985 PF00209 Sodium:neurotransmitter symporter family VY92_010995 PF03150 Di-haem cytochrome c peroxidase VY92_010995 PF14376 Haem-binding domain VY92_010995 PF00034 Cytochrome c VY92_011000 PF00005 ABC transporter VY92_011000 PF00664 ABC transporter transmembrane region VY92_011005 PF00664 ABC transporter transmembrane region VY92_011005 PF00005 ABC transporter VY92_011015 PF00204 DNA gyrase B VY92_011015 PF00986 DNA gyrase B subunit, carboxyl terminus VY92_011015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VY92_011015 PF01751 Toprim domain VY92_011015 PF18053 DNA gyrase B subunit insert domain VY92_011020 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VY92_011025 PF06005 Cell division protein ZapB VY92_011030 PF00258 Flavodoxin VY92_011035 PF13932 GidA associated domain VY92_011035 PF01134 Glucose inhibited division protein A VY92_011040 PF02527 rRNA small subunit methyltransferase G VY92_011050 PF00119 ATP synthase A chain VY92_011055 PF00137 ATP synthase subunit C VY92_011060 PF00430 ATP synthase B/B' CF(0) VY92_011065 PF00213 ATP synthase delta (OSCP) subunit VY92_011070 PF00306 ATP synthase alpha/beta chain, C terminal domain VY92_011070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VY92_011070 PF02874 ATP synthase alpha/beta family, beta-barrel domain VY92_011075 PF00231 ATP synthase VY92_011080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VY92_011080 PF02874 ATP synthase alpha/beta family, beta-barrel domain VY92_011085 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VY92_011090 PF00459 Inositol monophosphatase family VY92_011095 PF07690 Major Facilitator Superfamily VY92_011110 PF12161 HsdM N-terminal domain VY92_011110 PF02384 N-6 DNA Methylase VY92_011125 PF09278 MerR, DNA binding VY92_011125 PF00376 MerR family regulatory protein VY92_011130 PF16916 Dimerisation domain of Zinc Transporter VY92_011130 PF01545 Cation efflux family VY92_011145 PF13508 Acetyltransferase (GNAT) domain VY92_011155 PF01555 DNA methylase VY92_011155 PF18273 Type III R-M EcoP15I C-terminal domain VY92_011160 PF04851 Type III restriction enzyme, res subunit VY92_011160 PF08774 VRR-NUC domain VY92_011165 PF07687 Peptidase dimerisation domain VY92_011165 PF01546 Peptidase family M20/M25/M40 VY92_011170 PF00156 Phosphoribosyl transferase domain VY92_011185 PF02142 MGS-like domain VY92_011185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VY92_011185 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VY92_011190 PF09382 RQC domain VY92_011190 PF00271 Helicase conserved C-terminal domain VY92_011190 PF00570 HRDC domain VY92_011190 PF16124 RecQ zinc-binding VY92_011190 PF00270 DEAD/DEAH box helicase VY92_011195 PF01491 Frataxin-like domain VY92_011200 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VY92_011200 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VY92_011215 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VY92_011220 PF00682 HMGL-like VY92_011220 PF00364 Biotin-requiring enzyme VY92_011220 PF02436 Conserved carboxylase domain VY92_011225 PF04277 Oxaloacetate decarboxylase, gamma chain VY92_011235 PF00474 Sodium:solute symporter family VY92_011245 PF00884 Sulfatase VY92_011245 PF16347 Domain of unknown function (DUF4976) VY92_011250 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VY92_011250 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VY92_011255 PF03466 LysR substrate binding domain VY92_011255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_011260 PF00892 EamA-like transporter family VY92_011265 PF03819 MazG nucleotide pyrophosphohydrolase domain VY92_011270 PF00582 Universal stress protein family VY92_011275 PF02272 DHHA1 domain VY92_011275 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VY92_011275 PF01411 tRNA synthetases class II (A) VY92_011280 PF02599 Global regulator protein family VY92_011285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VY92_011285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VY92_011285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VY92_011285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VY92_011290 PF00483 Nucleotidyl transferase VY92_011295 PF05525 Branched-chain amino acid transport protein VY92_011300 PF00588 SpoU rRNA Methylase family VY92_011305 PF01914 MarC family integral membrane protein VY92_011310 PF03180 NLPA lipoprotein VY92_011315 PF00528 Binding-protein-dependent transport system inner membrane component VY92_011320 PF09383 NIL domain VY92_011320 PF00005 ABC transporter VY92_011350 PF00238 Ribosomal protein L14p/L23e VY92_011355 PF00467 KOW motif VY92_011355 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VY92_011360 PF00281 Ribosomal protein L5 VY92_011360 PF00673 ribosomal L5P family C-terminus VY92_011365 PF00253 Ribosomal protein S14p/S29e VY92_011370 PF00410 Ribosomal protein S8 VY92_011375 PF00347 Ribosomal protein L6 VY92_011380 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VY92_011385 PF03719 Ribosomal protein S5, C-terminal domain VY92_011385 PF00333 Ribosomal protein S5, N-terminal domain VY92_011390 PF00327 Ribosomal protein L30p/L7e VY92_011395 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VY92_011400 PF00344 SecY translocase VY92_011405 PF00444 Ribosomal protein L36 VY92_011410 PF00416 Ribosomal protein S13/S18 VY92_011415 PF00411 Ribosomal protein S11 VY92_011420 PF01479 S4 domain VY92_011420 PF00163 Ribosomal protein S4/S9 N-terminal domain VY92_011425 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VY92_011425 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VY92_011425 PF01000 RNA polymerase Rpb3/RpoA insert domain VY92_011430 PF01196 Ribosomal protein L17 VY92_011435 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VY92_011440 PF04380 Membrane fusogenic activity VY92_011445 PF01467 Cytidylyltransferase-like VY92_011445 PF13521 AAA domain VY92_011450 PF00149 Calcineurin-like phosphoesterase VY92_011460 PF00589 Phage integrase family VY92_011460 PF13356 Arm DNA-binding domain VY92_011535 PF18766 SWI2/SNF2 ATPase VY92_011535 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VY92_011535 PF11867 Domain of unknown function (DUF3387) VY92_011550 PF01420 Type I restriction modification DNA specificity domain VY92_011555 PF02384 N-6 DNA Methylase VY92_011560 PF03923 Uncharacterized lipoprotein VY92_011570 PF11973 NQRA C-terminal domain VY92_011570 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VY92_011575 PF03116 NQR2, RnfD, RnfE family VY92_011580 PF04205 FMN-binding domain VY92_011585 PF02508 Rnf-Nqr subunit, membrane protein VY92_011590 PF02508 Rnf-Nqr subunit, membrane protein VY92_011595 PF00175 Oxidoreductase NAD-binding domain VY92_011595 PF00111 2Fe-2S iron-sulfur cluster binding domain VY92_011595 PF00970 Oxidoreductase FAD-binding domain VY92_011600 PF02424 ApbE family VY92_011605 PF04400 (Na+)-NQR maturation NqrM VY92_011615 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VY92_011615 PF00534 Glycosyl transferases group 1 VY92_011620 PF01467 Cytidylyltransferase-like VY92_011625 PF03616 Sodium/glutamate symporter VY92_011630 PF00485 Phosphoribulokinase / Uridine kinase family VY92_011655 PF03144 Elongation factor Tu domain 2 VY92_011655 PF03143 Elongation factor Tu C-terminal domain VY92_011655 PF00009 Elongation factor Tu GTP binding domain VY92_011660 PF00293 NUDIX domain VY92_011660 PF09297 NADH pyrophosphatase zinc ribbon domain VY92_011665 PF01208 Uroporphyrinogen decarboxylase (URO-D) VY92_011670 PF04222 Protein of unknown function (DUF416) VY92_011675 PF00216 Bacterial DNA-binding protein VY92_011680 PF00455 DeoR C terminal sensor domain VY92_011680 PF08220 DeoR-like helix-turn-helix domain VY92_011685 PF01380 SIS domain VY92_011695 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VY92_011695 PF01243 Pyridoxamine 5'-phosphate oxidase VY92_011700 PF07690 Major Facilitator Superfamily VY92_011705 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VY92_011715 PF17188 MucB/RseB C-terminal domain VY92_011715 PF03888 MucB/RseB N-terminal domain VY92_011720 PF03872 Anti sigma-E protein RseA, N-terminal domain VY92_011720 PF03873 Anti sigma-E protein RseA, C-terminal domain VY92_011725 PF08281 Sigma-70, region 4 VY92_011725 PF04542 Sigma-70 region 2 VY92_011730 PF03937 Flavinator of succinate dehydrogenase VY92_011740 PF13649 Methyltransferase domain VY92_011755 PF07669 Eco57I restriction-modification methylase VY92_011760 PF04851 Type III restriction enzyme, res subunit VY92_011765 PF00919 Uncharacterized protein family UPF0004 VY92_011765 PF04055 Radical SAM superfamily VY92_011765 PF18693 TRAM domain VY92_011770 PF01451 Low molecular weight phosphotyrosine protein phosphatase VY92_011775 PF07992 Pyridine nucleotide-disulphide oxidoreductase VY92_011775 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VY92_011780 PF00310 Glutamine amidotransferases class-II VY92_011780 PF04898 Glutamate synthase central domain VY92_011780 PF01645 Conserved region in glutamate synthase VY92_011780 PF01493 GXGXG motif VY92_011790 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VY92_011795 PF00664 ABC transporter transmembrane region VY92_011795 PF00005 ABC transporter VY92_011800 PF05190 MutS family domain IV VY92_011800 PF05192 MutS domain III VY92_011800 PF05188 MutS domain II VY92_011800 PF01624 MutS domain I VY92_011800 PF00488 MutS domain V VY92_011805 PF00696 Amino acid kinase family VY92_011815 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VY92_011825 PF06545 Protein of unknown function (DUF1116) VY92_011830 PF02629 CoA binding domain VY92_011830 PF00549 CoA-ligase VY92_011835 PF00857 Isochorismatase family VY92_011840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_011840 PF03466 LysR substrate binding domain VY92_011850 PF06545 Protein of unknown function (DUF1116) VY92_011855 PF00549 CoA-ligase VY92_011855 PF02629 CoA binding domain VY92_011860 PF12796 Ankyrin repeats (3 copies) VY92_011865 PF03466 LysR substrate binding domain VY92_011865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VY92_011870 PF00154 recA bacterial DNA recombination protein VY92_011875 PF02631 RecX family VY92_011880 PF01797 Transposase IS200 like VY92_011885 PF07282 Putative transposase DNA-binding domain VY92_011885 PF12323 Helix-turn-helix domain VY92_011885 PF01385 Probable transposase VY92_011890 PF04073 Aminoacyl-tRNA editing domain VY92_011890 PF03129 Anticodon binding domain VY92_011890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VY92_011895 PF00005 ABC transporter VY92_011900 PF00528 Binding-protein-dependent transport system inner membrane component VY92_011905 PF00497 Bacterial extracellular solute-binding proteins, family 3 VY92_011910 PF06969 HemN C-terminal domain VY92_011910 PF04055 Radical SAM superfamily VY92_011915 PF10675 Protein of unknown function (DUF2489) VY92_011920 PF04220 Der GTPase activator (YihI) VY92_011925 PF00849 RNA pseudouridylate synthase VY92_011930 PF00176 SNF2 family N-terminal domain VY92_011930 PF12137 RNA polymerase recycling family C-terminal VY92_011930 PF18337 RapA N-terminal Tudor like domain VY92_011930 PF00271 Helicase conserved C-terminal domain VY92_011930 PF18339 RapA N-terminal Tudor like domain 1 VY92_011935 PF04973 Nicotinamide mononucleotide transporter VY92_011940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VY92_011940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VY92_011945 PF12762 ISXO2-like transposase domain VY92_011950 PF00171 Aldehyde dehydrogenase family VY92_011955 PF04962 KduI/IolB family VY92_011960 PF00480 ROK family VY92_011960 PF01047 MarR family VY92_011965 PF00121 Triosephosphate isomerase VY92_011985 PF02278 Polysaccharide lyase family 8, super-sandwich domain VY92_011985 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VY92_011985 PF09093 Lyase, catalytic VY92_011985 PF09092 Lyase, N terminal VY92_012005 PF07690 Major Facilitator Superfamily VY92_012010 PF00596 Class II Aldolase and Adducin N-terminal domain VY92_012015 PF05025 RbsD / FucU transport protein family VY92_012020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VY92_012020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VY92_012025 PF07881 L-fucose isomerase, first N-terminal domain VY92_012025 PF02952 L-fucose isomerase, C-terminal domain VY92_012025 PF07882 L-fucose isomerase, second N-terminal domain VY92_012030 PF08220 DeoR-like helix-turn-helix domain VY92_012030 PF00455 DeoR C terminal sensor domain VY92_012035 PF01791 DeoC/LacD family aldolase VY92_012040 PF01370 NAD dependent epimerase/dehydratase family VY92_012055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VY92_012060 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VY92_012065 PF13580 SIS domain VY92_012070 PF00265 Thymidine kinase VY92_012080 PF00814 Glycoprotease family VY92_012085 PF01165 Ribosomal protein S21 VY92_012090 PF08278 DNA primase DnaG DnaB-binding VY92_012090 PF10410 DnaB-helicase binding domain of primase VY92_012090 PF01807 CHC2 zinc finger VY92_012090 PF08275 DNA primase catalytic core, N-terminal domain VY92_012095 PF03979 Sigma-70 factor, region 1.1 VY92_012095 PF04545 Sigma-70, region 4 VY92_012095 PF00140 Sigma-70 factor, region 1.2 VY92_012095 PF04542 Sigma-70 region 2 VY92_012095 PF04539 Sigma-70 region 3 VY92_012095 PF04546 Sigma-70, non-essential region VY92_012110 PF04175 Protein of unknown function (DUF406) VY92_012115 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VY92_012115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VY92_012120 PF01909 Nucleotidyltransferase domain VY92_012125 PF08780 Nucleotidyltransferase substrate binding protein like VY92_012130 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VY92_012135 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VY92_012135 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VY92_012140 PF00459 Inositol monophosphatase family VY92_012145 PF03169 OPT oligopeptide transporter protein VY92_012150 PF01479 S4 domain VY92_012155 PF01430 Hsp33 protein VY92_012160 PF00356 Bacterial regulatory proteins, lacI family VY92_012170 PF08240 Alcohol dehydrogenase GroES-like domain VY92_012170 PF00107 Zinc-binding dehydrogenase VY92_012175 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VY92_012175 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VY92_012180 PF00005 ABC transporter VY92_012185 PF02653 Branched-chain amino acid transport system / permease component VY92_012190 PF13407 Periplasmic binding protein domain VY92_012195 PF01293 Phosphoenolpyruvate carboxykinase VY92_012200 PF01340 Met Apo-repressor, MetJ VY92_012205 PF00338 Ribosomal protein S10p/S20e VY92_012215 PF00573 Ribosomal protein L4/L1 family VY92_012220 PF00276 Ribosomal protein L23 VY92_012225 PF00181 Ribosomal Proteins L2, RNA binding domain VY92_012225 PF03947 Ribosomal Proteins L2, C-terminal domain VY92_012230 PF00203 Ribosomal protein S19 VY92_012235 PF00237 Ribosomal protein L22p/L17e VY92_012240 PF07650 KH domain VY92_012240 PF00189 Ribosomal protein S3, C-terminal domain VY92_012245 PF00252 Ribosomal protein L16p/L10e VY92_012250 PF00831 Ribosomal L29 protein VY92_012255 PF00366 Ribosomal protein S17 VY92_012265 PF14659 Phage integrase, N-terminal SAM-like domain VY92_012265 PF00589 Phage integrase family VY92_012265 PF13356 Arm DNA-binding domain VY92_012350 PF03592 Terminase small subunit VY92_012415 PF14849 YidC periplasmic domain VY92_012415 PF02096 60Kd inner membrane protein