locus-tag class description dqs_0001 PF08299 Bacterial dnaA protein helix-turn-helix dqs_0001 PF00308 Bacterial dnaA protein dqs_0001 PF11638 DnaA N-terminal domain dqs_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain dqs_0002 PF02767 DNA polymerase III beta subunit, central domain dqs_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain dqs_0003 PF18053 DNA gyrase B subunit insert domain dqs_0003 PF00986 DNA gyrase B subunit, carboxyl terminus dqs_0003 PF00204 DNA gyrase B dqs_0003 PF01751 Toprim domain dqs_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0004 PF12161 HsdM N-terminal domain dqs_0004 PF02384 N-6 DNA Methylase dqs_0006 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) dqs_0006 PF18766 SWI2/SNF2 ATPase dqs_0006 PF12008 Type I restriction and modification enzyme - subunit R C terminal dqs_0021 PF00106 short chain dehydrogenase dqs_0022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0022 PF03466 LysR substrate binding domain dqs_0023 PF00849 RNA pseudouridylate synthase dqs_0024 PF00258 Flavodoxin dqs_0028 PF01965 DJ-1/PfpI family dqs_0030 PF03466 LysR substrate binding domain dqs_0030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0031 PF01799 [2Fe-2S] binding domain dqs_0031 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_0032 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase dqs_0033 PF02625 XdhC and CoxI family dqs_0033 PF13478 XdhC Rossmann domain dqs_0035 PF01613 Flavin reductase like domain dqs_0036 PF16363 GDP-mannose 4,6 dehydratase dqs_0037 PF02709 N-terminal domain of galactosyltransferase dqs_0037 PF00535 Glycosyl transferase family 2 dqs_0039 PF03471 Transporter associated domain dqs_0039 PF03741 Integral membrane protein TerC family dqs_0040 PF03466 LysR substrate binding domain dqs_0040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0041 PF06779 Uncharacterised MFS-type transporter YbfB dqs_0045 PF07044 Protein of unknown function (DUF1329) dqs_0049 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding dqs_0049 PF18381 YcaO cyclodehydratase C-terminal domain dqs_0050 PF02311 AraC-like ligand binding domain dqs_0050 PF12833 Helix-turn-helix domain dqs_0053 PF03746 LamB/YcsF family dqs_0054 PF02626 Carboxyltransferase domain, subdomain A and B dqs_0055 PF02682 Carboxyltransferase domain, subdomain C and D dqs_0056 PF00561 alpha/beta hydrolase fold dqs_0057 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) dqs_0058 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) dqs_0059 PF08486 Stage II sporulation protein dqs_0059 PF10062 Predicted secreted protein (DUF2300) dqs_0063 PF00512 His Kinase A (phospho-acceptor) domain dqs_0063 PF00672 HAMP domain dqs_0063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0064 PF00072 Response regulator receiver domain dqs_0064 PF00486 Transcriptional regulatory protein, C terminal dqs_0065 PF00005 ABC transporter dqs_0066 PF12704 MacB-like periplasmic core domain dqs_0066 PF02687 FtsX-like permease family dqs_0069 PF01835 MG2 domain dqs_0069 PF00207 Alpha-2-macroglobulin family dqs_0069 PF07703 Alpha-2-macroglobulin bait region domain dqs_0070 PF06672 Protein of unknown function (DUF1175) dqs_0071 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) dqs_0074 PF01594 AI-2E family transporter dqs_0076 PF00378 Enoyl-CoA hydratase/isomerase dqs_0081 PF00158 Sigma-54 interaction domain dqs_0081 PF00072 Response regulator receiver domain dqs_0081 PF02954 Bacterial regulatory protein, Fis family dqs_0082 PF00512 His Kinase A (phospho-acceptor) domain dqs_0082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0084 PF12034 Domain of unknown function (DUF3520) dqs_0084 PF12450 von Willebrand factor dqs_0084 PF00092 von Willebrand factor type A domain dqs_0085 PF04542 Sigma-70 region 2 dqs_0085 PF08281 Sigma-70, region 4 dqs_0089 PF01139 tRNA-splicing ligase RtcB dqs_0090 PF00009 Elongation factor Tu GTP binding domain dqs_0090 PF16658 Class II release factor RF3, C-terminal domain dqs_0090 PF03144 Elongation factor Tu domain 2 dqs_0092 PF04381 Putative exonuclease, RdgC dqs_0094 PF01479 S4 domain dqs_0094 PF00849 RNA pseudouridylate synthase dqs_0096 PF08207 Elongation factor P (EF-P) KOW-like domain dqs_0096 PF09285 Elongation factor P, C-terminal dqs_0096 PF01132 Elongation factor P (EF-P) OB domain dqs_0098 PF00005 ABC transporter dqs_0098 PF17755 UvrA DNA-binding domain dqs_0098 PF17760 UvrA interaction domain dqs_0100 PF01322 Cytochrome C' dqs_0101 PF00672 HAMP domain dqs_0101 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_0101 PF17200 Single Cache domain 2 dqs_0102 PF13180 PDZ domain dqs_0103 PF00593 TonB dependent receptor dqs_0103 PF07715 TonB-dependent Receptor Plug Domain dqs_0104 PF03466 LysR substrate binding domain dqs_0104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0105 PF01751 Toprim domain dqs_0105 PF01131 DNA topoisomerase dqs_0106 PF04361 Protein of unknown function (DUF494) dqs_0107 PF17782 DprA winged helix domain dqs_0107 PF02481 DNA recombination-mediator protein A dqs_0109 PF01327 Polypeptide deformylase dqs_0110 PF00551 Formyl transferase dqs_0110 PF02911 Formyl transferase, C-terminal domain dqs_0111 PF01435 Peptidase family M48 dqs_0112 PF08534 Redoxin dqs_0113 PF01841 Transglutaminase-like superfamily dqs_0115 PF08534 Redoxin dqs_0119 PF02580 D-Tyr-tRNA(Tyr) deacylase dqs_0120 PF05726 Pirin C-terminal cupin domain dqs_0120 PF02678 Pirin dqs_0121 PF08240 Alcohol dehydrogenase GroES-like domain dqs_0122 PF03466 LysR substrate binding domain dqs_0122 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0123 PF02798 Glutathione S-transferase, N-terminal domain dqs_0125 PF01575 MaoC like domain dqs_0126 PF01048 Phosphorylase superfamily dqs_0126 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus dqs_0127 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_0127 PF00005 ABC transporter dqs_0128 PF00005 ABC transporter dqs_0130 PF02653 Branched-chain amino acid transport system / permease component dqs_0132 PF04055 Radical SAM superfamily dqs_0138 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_0138 PF17200 Single Cache domain 2 dqs_0138 PF00672 HAMP domain dqs_0139 PF00672 HAMP domain dqs_0139 PF17200 Single Cache domain 2 dqs_0139 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_0140 PF01361 Tautomerase enzyme dqs_0141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0141 PF03466 LysR substrate binding domain dqs_0142 PF01063 Amino-transferase class IV dqs_0143 PF00990 Diguanylate cyclase, GGDEF domain dqs_0145 PF08448 PAS fold dqs_0145 PF00512 His Kinase A (phospho-acceptor) domain dqs_0145 PF13188 PAS domain dqs_0145 PF00072 Response regulator receiver domain dqs_0145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0146 PF13458 Periplasmic binding protein dqs_0147 PF00781 Diacylglycerol kinase catalytic domain dqs_0149 PF10442 FIST C domain dqs_0149 PF08495 FIST N domain dqs_0150 PF01134 Glucose inhibited division protein A dqs_0150 PF13932 GidA associated domain dqs_0151 PF02527 rRNA small subunit methyltransferase G dqs_0152 PF13614 AAA domain dqs_0155 PF02195 ParB-like nuclease domain dqs_0155 PF17762 HTH domain found in ParB protein dqs_0157 PF07690 Major Facilitator Superfamily dqs_0158 PF01979 Amidohydrolase family dqs_0159 PF01553 Acyltransferase dqs_0159 PF00501 AMP-binding enzyme dqs_0160 PF01022 Bacterial regulatory protein, arsR family dqs_0162 PF00119 ATP synthase A chain dqs_0163 PF00137 ATP synthase subunit C dqs_0164 PF00430 ATP synthase B/B' CF(0) dqs_0165 PF00213 ATP synthase delta (OSCP) subunit dqs_0166 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain dqs_0166 PF02874 ATP synthase alpha/beta family, beta-barrel domain dqs_0166 PF00306 ATP synthase alpha/beta chain, C terminal domain dqs_0167 PF00231 ATP synthase dqs_0168 PF02874 ATP synthase alpha/beta family, beta-barrel domain dqs_0168 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain dqs_0169 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain dqs_0169 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain dqs_0171 PF01209 ubiE/COQ5 methyltransferase family dqs_0173 PF00486 Transcriptional regulatory protein, C terminal dqs_0173 PF00072 Response regulator receiver domain dqs_0174 PF00512 His Kinase A (phospho-acceptor) domain dqs_0174 PF00989 PAS fold dqs_0174 PF11808 Phosphate regulon sensor protein PhoR dqs_0174 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0177 PF13230 Glutamine amidotransferases class-II dqs_0179 PF02637 GatB domain dqs_0179 PF02934 GatB/GatE catalytic domain dqs_0181 PF01425 Amidase dqs_0182 PF02686 Glu-tRNAGln amidotransferase C subunit dqs_0186 PF03717 Penicillin-binding Protein dimerisation domain dqs_0186 PF00905 Penicillin binding protein transpeptidase domain dqs_0187 PF01098 Cell cycle protein dqs_0188 PF03330 Lytic transglycolase dqs_0188 PF05036 Sporulation related domain dqs_0189 PF07943 Penicillin-binding protein 5, C-terminal domain dqs_0189 PF00768 D-alanyl-D-alanine carboxypeptidase dqs_0190 PF01063 Amino-transferase class IV dqs_0191 PF04359 Protein of unknown function (DUF493) dqs_0192 PF03099 Biotin/lipoate A/B protein ligase family dqs_0193 PF04055 Radical SAM superfamily dqs_0193 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family dqs_0195 PF00580 UvrD/REP helicase N-terminal domain dqs_0195 PF13361 UvrD-like helicase C-terminal domain dqs_0196 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_0203 PF00106 short chain dehydrogenase dqs_0206 PF08546 Ketopantoate reductase PanE/ApbA C terminal dqs_0206 PF02558 Ketopantoate reductase PanE/ApbA dqs_0207 PF00085 Thioredoxin dqs_0212 PF00117 Glutamine amidotransferase class-I dqs_0212 PF04715 Anthranilate synthase component I, N terminal region dqs_0212 PF00425 chorismate binding enzyme dqs_0213 PF12320 Type 5 capsule protein repressor C-terminal domain dqs_0213 PF00149 Calcineurin-like phosphoesterase dqs_0214 PF13476 AAA domain dqs_0218 PF02608 ABC transporter substrate-binding protein PnrA-like dqs_0219 PF07687 Peptidase dimerisation domain dqs_0219 PF01546 Peptidase family M20/M25/M40 dqs_0220 PF12833 Helix-turn-helix domain dqs_0220 PF06719 AraC-type transcriptional regulator N-terminus dqs_0223 PF01266 FAD dependent oxidoreductase dqs_0224 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_0224 PF04324 BFD-like [2Fe-2S] binding domain dqs_0226 PF01037 Lrp/AsnC ligand binding domain dqs_0227 PF00202 Aminotransferase class-III dqs_0229 PF00171 Aldehyde dehydrogenase family dqs_0231 PF01266 FAD dependent oxidoreductase dqs_0232 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle dqs_0233 PF00528 Binding-protein-dependent transport system inner membrane component dqs_0234 PF00528 Binding-protein-dependent transport system inner membrane component dqs_0235 PF00005 ABC transporter dqs_0235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region dqs_0236 PF00171 Aldehyde dehydrogenase family dqs_0241 PF00873 AcrB/AcrD/AcrF family dqs_0243 PF07715 TonB-dependent Receptor Plug Domain dqs_0243 PF00593 TonB dependent receptor dqs_0246 PF01618 MotA/TolQ/ExbB proton channel family dqs_0247 PF02472 Biopolymer transport protein ExbD/TolR dqs_0248 PF02472 Biopolymer transport protein ExbD/TolR dqs_0250 PF00962 Adenosine/AMP deaminase dqs_0251 PF02146 Sir2 family dqs_0254 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_0256 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_0257 PF00440 Bacterial regulatory proteins, tetR family dqs_0257 PF13977 BetI-type transcriptional repressor, C-terminal dqs_0258 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_0258 PF00529 HlyD membrane-fusion protein of T1SS dqs_0259 PF00873 AcrB/AcrD/AcrF family dqs_0260 PF02321 Outer membrane efflux protein dqs_0261 PF00210 Ferritin-like domain dqs_0262 PF01258 Prokaryotic dksA/traR C4-type zinc finger dqs_0263 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_0263 PF00175 Oxidoreductase NAD-binding domain dqs_0272 PF07977 FabA-like domain dqs_0276 PF08521 Two-component sensor kinase N-terminal dqs_0276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0276 PF00512 His Kinase A (phospho-acceptor) domain dqs_0277 PF00072 Response regulator receiver domain dqs_0277 PF00486 Transcriptional regulatory protein, C terminal dqs_0281 PF00873 AcrB/AcrD/AcrF family dqs_0284 PF02310 B12 binding domain dqs_0284 PF04055 Radical SAM superfamily dqs_0286 PF04542 Sigma-70 region 2 dqs_0286 PF12680 SnoaL-like domain dqs_0286 PF08281 Sigma-70, region 4 dqs_0294 PF00691 OmpA family dqs_0294 PF13677 Membrane MotB of proton-channel complex MotA/MotB dqs_0298 PF00550 Phosphopantetheine attachment site dqs_0302 PF00005 ABC transporter dqs_0305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal dqs_0305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III dqs_0309 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain dqs_0309 PF00753 Metallo-beta-lactamase superfamily dqs_0309 PF10996 Beta-Casp domain dqs_0311 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_0312 PF00171 Aldehyde dehydrogenase family dqs_0313 PF00378 Enoyl-CoA hydratase/isomerase dqs_0314 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_0314 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_0314 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain dqs_0315 PF03061 Thioesterase superfamily dqs_0317 PF05138 Phenylacetic acid catabolic protein dqs_0318 PF06243 Phenylacetic acid degradation B dqs_0319 PF05138 Phenylacetic acid catabolic protein dqs_0320 PF01883 Iron-sulfur cluster assembly protein dqs_0321 PF00175 Oxidoreductase NAD-binding domain dqs_0321 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_0321 PF00970 Oxidoreductase FAD-binding domain dqs_0323 PF00108 Thiolase, N-terminal domain dqs_0323 PF02803 Thiolase, C-terminal domain dqs_0326 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_0326 PF00005 ABC transporter dqs_0327 PF00005 ABC transporter dqs_0328 PF00216 Bacterial DNA-binding protein dqs_0329 PF00271 Helicase conserved C-terminal domain dqs_0329 PF00270 DEAD/DEAH box helicase dqs_0330 PF01029 NusB family dqs_0331 PF00885 6,7-dimethyl-8-ribityllumazine synthase dqs_0332 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase dqs_0332 PF00925 GTP cyclohydrolase II dqs_0333 PF00677 Lumazine binding domain dqs_0334 PF11412 Disulphide bond corrector protein DsbC dqs_0334 PF02683 Cytochrome C biogenesis protein transmembrane region dqs_0335 PF03091 CutA1 divalent ion tolerance protein dqs_0336 PF03060 Nitronate monooxygenase dqs_0337 PF09350 Domain of unknown function (DUF1992) dqs_0338 PF00970 Oxidoreductase FAD-binding domain dqs_0338 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_0338 PF00175 Oxidoreductase NAD-binding domain dqs_0340 PF00440 Bacterial regulatory proteins, tetR family dqs_0343 PF03466 LysR substrate binding domain dqs_0343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0348 PF00563 EAL domain dqs_0348 PF00498 FHA domain dqs_0348 PF00990 Diguanylate cyclase, GGDEF domain dqs_0349 PF08448 PAS fold dqs_0349 PF00990 Diguanylate cyclase, GGDEF domain dqs_0351 PF12849 PBP superfamily domain dqs_0353 PF01322 Cytochrome C' dqs_0354 PF00797 N-acetyltransferase dqs_0355 PF13614 AAA domain dqs_0357 PF00580 UvrD/REP helicase N-terminal domain dqs_0357 PF13361 UvrD-like helicase C-terminal domain dqs_0358 PF00999 Sodium/hydrogen exchanger family dqs_0361 PF01061 ABC-2 type transporter dqs_0369 PF00303 Thymidylate synthase dqs_0371 PF08378 Nuclease-related domain dqs_0373 PF00043 Glutathione S-transferase, C-terminal domain dqs_0373 PF13417 Glutathione S-transferase, N-terminal domain dqs_0378 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_0381 PF00266 Aminotransferase class-V dqs_0382 PF01169 Uncharacterized protein family UPF0016 dqs_0387 PF00474 Sodium:solute symporter family dqs_0388 PF00202 Aminotransferase class-III dqs_0389 PF03109 ABC1 family dqs_0390 PF07715 TonB-dependent Receptor Plug Domain dqs_0390 PF00593 TonB dependent receptor dqs_0392 PF03485 Arginyl tRNA synthetase N terminal domain dqs_0392 PF05746 DALR anticodon binding domain dqs_0392 PF00750 tRNA synthetases class I (R) dqs_0394 PF13462 Thioredoxin dqs_0395 PF00106 short chain dehydrogenase dqs_0400 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus dqs_0400 PF00561 alpha/beta hydrolase fold dqs_0402 PF13411 MerR HTH family regulatory protein dqs_0404 PF02803 Thiolase, C-terminal domain dqs_0404 PF00108 Thiolase, N-terminal domain dqs_0405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_0405 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_0405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_0406 PF01323 DSBA-like thioredoxin domain dqs_0409 PF00753 Metallo-beta-lactamase superfamily dqs_0409 PF16123 Hydroxyacylglutathione hydrolase C-terminus dqs_0410 PF03668 P-loop ATPase protein family dqs_0413 PF00072 Response regulator receiver domain dqs_0413 PF01339 CheB methylesterase dqs_0414 PF01739 CheR methyltransferase, SAM binding domain dqs_0414 PF03705 CheR methyltransferase, all-alpha domain dqs_0415 PF03975 CheD chemotactic sensory transduction dqs_0416 PF01584 CheW-like domain dqs_0417 PF00672 HAMP domain dqs_0417 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_0418 PF01584 CheW-like domain dqs_0418 PF02895 Signal transducing histidine kinase, homodimeric domain dqs_0418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0418 PF01627 Hpt domain dqs_0420 PF12729 Four helix bundle sensory module for signal transduction dqs_0420 PF00672 HAMP domain dqs_0420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_0424 PF06508 Queuosine biosynthesis protein QueC dqs_0425 PF04055 Radical SAM superfamily dqs_0427 PF00691 OmpA family dqs_0428 PF04052 TolB amino-terminal domain dqs_0428 PF07676 WD40-like Beta Propeller Repeat dqs_0430 PF02472 Biopolymer transport protein ExbD/TolR dqs_0431 PF01618 MotA/TolQ/ExbB proton channel family dqs_0432 PF03061 Thioesterase superfamily dqs_0434 PF00227 Proteasome subunit dqs_0435 PF00004 ATPase family associated with various cellular activities (AAA) dqs_0435 PF07724 AAA domain (Cdc48 subfamily) dqs_0437 PF00563 EAL domain dqs_0437 PF00990 Diguanylate cyclase, GGDEF domain dqs_0437 PF03707 Bacterial signalling protein N terminal repeat dqs_0438 PF01479 S4 domain dqs_0439 PF00009 Elongation factor Tu GTP binding domain dqs_0440 PF01507 Phosphoadenosine phosphosulfate reductase family dqs_0441 PF01507 Phosphoadenosine phosphosulfate reductase family dqs_0444 PF01925 Sulfite exporter TauE/SafE dqs_0445 PF03466 LysR substrate binding domain dqs_0445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0447 PF17763 Glutaminase/Asparaginase C-terminal domain dqs_0447 PF00710 Asparaginase, N-terminal dqs_0448 PF00206 Lyase dqs_0448 PF10415 Fumarase C C-terminus dqs_0449 PF00710 Asparaginase, N-terminal dqs_0449 PF17763 Glutaminase/Asparaginase C-terminal domain dqs_0450 PF00005 ABC transporter dqs_0451 PF00528 Binding-protein-dependent transport system inner membrane component dqs_0452 PF00528 Binding-protein-dependent transport system inner membrane component dqs_0453 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_0455 PF04675 DNA ligase N terminus dqs_0455 PF01068 ATP dependent DNA ligase domain dqs_0455 PF04679 ATP dependent DNA ligase C terminal region dqs_0456 PF00271 Helicase conserved C-terminal domain dqs_0456 PF08494 DEAD/H associated dqs_0456 PF00270 DEAD/DEAH box helicase dqs_0458 PF02954 Bacterial regulatory protein, Fis family dqs_0458 PF00072 Response regulator receiver domain dqs_0458 PF00158 Sigma-54 interaction domain dqs_0459 PF02743 Cache domain dqs_0459 PF00512 His Kinase A (phospho-acceptor) domain dqs_0459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0460 PF00999 Sodium/hydrogen exchanger family dqs_0460 PF02254 TrkA-N domain dqs_0461 PF08447 PAS fold dqs_0461 PF00990 Diguanylate cyclase, GGDEF domain dqs_0461 PF00563 EAL domain dqs_0461 PF08448 PAS fold dqs_0463 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_0464 PF00664 ABC transporter transmembrane region dqs_0464 PF00005 ABC transporter dqs_0466 PF02492 CobW/HypB/UreG, nucleotide-binding domain dqs_0466 PF07683 Cobalamin synthesis protein cobW C-terminal domain dqs_0468 PF00072 Response regulator receiver domain dqs_0468 PF00486 Transcriptional regulatory protein, C terminal dqs_0469 PF00989 PAS fold dqs_0469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0469 PF00512 His Kinase A (phospho-acceptor) domain dqs_0470 PF00909 Ammonium Transporter Family dqs_0474 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_0474 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_0474 PF09317 Domain of unknown function (DUF1974) dqs_0475 PF02803 Thiolase, C-terminal domain dqs_0475 PF00108 Thiolase, N-terminal domain dqs_0476 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_0476 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_0476 PF00378 Enoyl-CoA hydratase/isomerase dqs_0477 PF03061 Thioesterase superfamily dqs_0478 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) dqs_0479 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_0479 PF00378 Enoyl-CoA hydratase/isomerase dqs_0479 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_0480 PF00108 Thiolase, N-terminal domain dqs_0480 PF02803 Thiolase, C-terminal domain dqs_0481 PF00378 Enoyl-CoA hydratase/isomerase dqs_0483 PF01053 Cys/Met metabolism PLP-dependent enzyme dqs_0486 PF02623 FliW protein dqs_0487 PF01042 Endoribonuclease L-PSP dqs_0488 PF00270 DEAD/DEAH box helicase dqs_0488 PF00271 Helicase conserved C-terminal domain dqs_0488 PF17191 RecG wedge domain dqs_0489 PF04345 Chorismate lyase dqs_0490 PF01040 UbiA prenyltransferase family dqs_0492 PF01042 Endoribonuclease L-PSP dqs_0493 PF09335 SNARE associated Golgi protein dqs_0494 PF07769 psiF repeat dqs_0496 PF01171 PP-loop family dqs_0497 PF00106 short chain dehydrogenase dqs_0501 PF00043 Glutathione S-transferase, C-terminal domain dqs_0501 PF02798 Glutathione S-transferase, N-terminal domain dqs_0503 PF12627 Probable RNA and SrmB- binding site of polymerase A dqs_0503 PF01966 HD domain dqs_0503 PF01743 Poly A polymerase head domain dqs_0506 PF14718 Soluble lytic murein transglycosylase L domain dqs_0506 PF01464 Transglycosylase SLT domain dqs_0507 PF01812 5-formyltetrahydrofolate cyclo-ligase family dqs_0508 PF00990 Diguanylate cyclase, GGDEF domain dqs_0508 PF08448 PAS fold dqs_0510 PF00585 C-terminal regulatory domain of Threonine dehydratase dqs_0510 PF00291 Pyridoxal-phosphate dependent enzyme dqs_0511 PF07475 HPr Serine kinase C-terminal domain dqs_0511 PF02603 HPr Serine kinase N terminus dqs_0512 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 dqs_0513 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein dqs_0514 PF04552 Sigma-54, DNA binding domain dqs_0514 PF00309 Sigma-54 factor, Activator interacting domain (AID) dqs_0514 PF04963 Sigma-54 factor, core binding domain dqs_0515 PF00005 ABC transporter dqs_0516 PF02631 RecX family dqs_0517 PF00154 recA bacterial DNA recombination protein dqs_0518 PF02464 Competence-damaged protein dqs_0519 PF04608 Phosphatidylglycerophosphatase A dqs_0520 PF02769 AIR synthase related protein, C-terminal domain dqs_0520 PF00586 AIR synthase related protein, N-terminal domain dqs_0521 PF03658 RnfH family Ubiquitin dqs_0522 PF02508 Rnf-Nqr subunit, membrane protein dqs_0523 PF04205 FMN-binding domain dqs_0524 PF03116 NQR2, RnfD, RnfE family dqs_0525 PF10531 SLBB domain dqs_0525 PF13375 RnfC Barrel sandwich hybrid domain dqs_0525 PF13237 4Fe-4S dicluster domain dqs_0525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_0526 PF04060 Putative Fe-S cluster dqs_0527 PF02508 Rnf-Nqr subunit, membrane protein dqs_0528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0528 PF00989 PAS fold dqs_0529 PF00158 Sigma-54 interaction domain dqs_0529 PF02954 Bacterial regulatory protein, Fis family dqs_0529 PF13185 GAF domain dqs_0532 PF00080 Copper/zinc superoxide dismutase (SODC) dqs_0533 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_0533 PF04055 Radical SAM superfamily dqs_0534 PF00037 4Fe-4S binding domain dqs_0536 PF00753 Metallo-beta-lactamase superfamily dqs_0536 PF00258 Flavodoxin dqs_0537 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_0538 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_0539 PF04891 NifQ dqs_0540 PF03747 ADP-ribosylglycohydrolase dqs_0543 PF09997 Predicted membrane protein (DUF2238) dqs_0547 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) dqs_0548 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family dqs_0549 PF00148 Nitrogenase component 1 type Oxidoreductase dqs_0550 PF11844 Domain of unknown function (DUF3364) dqs_0550 PF00148 Nitrogenase component 1 type Oxidoreductase dqs_0551 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family dqs_0551 PF06988 NifT/FixU protein dqs_0552 PF00037 4Fe-4S binding domain dqs_0553 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_0553 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal dqs_0555 PF00672 HAMP domain dqs_0555 PF17200 Single Cache domain 2 dqs_0555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_0556 PF00639 PPIC-type PPIASE domain dqs_0557 PF04319 NifZ domain dqs_0558 PF03206 Nitrogen fixation protein NifW dqs_0560 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_0561 PF00682 HMGL-like dqs_0562 PF00266 Aminotransferase class-V dqs_0563 PF04324 BFD-like [2Fe-2S] binding domain dqs_0563 PF01106 NifU-like domain dqs_0563 PF01592 NifU-like N terminal domain dqs_0564 PF01521 Iron-sulphur cluster biosynthesis dqs_0566 PF12838 4Fe-4S dicluster domain dqs_0568 PF03270 Protein of unknown function, DUF269 dqs_0570 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_0571 PF00148 Nitrogenase component 1 type Oxidoreductase dqs_0572 PF00148 Nitrogenase component 1 type Oxidoreductase dqs_0575 PF00990 Diguanylate cyclase, GGDEF domain dqs_0575 PF00563 EAL domain dqs_0575 PF03707 Bacterial signalling protein N terminal repeat dqs_0578 PF17200 Single Cache domain 2 dqs_0578 PF07730 Histidine kinase dqs_0579 PF00072 Response regulator receiver domain dqs_0579 PF00196 Bacterial regulatory proteins, luxR family dqs_0583 PF13693 Winged helix-turn-helix DNA-binding dqs_0595 PF00216 Bacterial DNA-binding protein dqs_0618 PF06074 Protein of unknown function (DUF935) dqs_0619 PF04233 Phage Mu protein F like protein dqs_0641 PF02075 Crossover junction endodeoxyribonuclease RuvC dqs_0642 PF01906 Putative heavy-metal-binding dqs_0644 PF01709 Transcriptional regulator dqs_0646 PF05872 Bacterial protein of unknown function (DUF853) dqs_0647 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0647 PF03466 LysR substrate binding domain dqs_0648 PF07690 Major Facilitator Superfamily dqs_0649 PF00892 EamA-like transporter family dqs_0650 PF02743 Cache domain dqs_0650 PF00672 HAMP domain dqs_0650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_0651 PF07690 Major Facilitator Superfamily dqs_0652 PF07690 Major Facilitator Superfamily dqs_0653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0653 PF03466 LysR substrate binding domain dqs_0654 PF02219 Methylenetetrahydrofolate reductase dqs_0655 PF01728 FtsJ-like methyltransferase dqs_0655 PF01479 S4 domain dqs_0656 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain dqs_0656 PF05221 S-adenosyl-L-homocysteine hydrolase dqs_0658 PF00438 S-adenosylmethionine synthetase, N-terminal domain dqs_0658 PF02772 S-adenosylmethionine synthetase, central domain dqs_0658 PF02773 S-adenosylmethionine synthetase, C-terminal domain dqs_0660 PF03279 Bacterial lipid A biosynthesis acyltransferase dqs_0662 PF01678 Diaminopimelate epimerase dqs_0664 PF00589 Phage integrase family dqs_0664 PF02899 Phage integrase, N-terminal SAM-like domain dqs_0666 PF17785 PUA-like domain dqs_0666 PF10672 S-adenosylmethionine-dependent methyltransferase dqs_0669 PF17864 RuvB AAA lid domain dqs_0669 PF05491 RuvB C-terminal winged helix domain dqs_0669 PF05496 Holliday junction DNA helicase RuvB P-loop domain dqs_0670 PF01330 RuvA N terminal domain dqs_0670 PF07499 RuvA, C-terminal domain dqs_0674 PF07670 Nucleoside recognition dqs_0674 PF02421 Ferrous iron transport protein B dqs_0674 PF17910 FeoB cytosolic helical domain dqs_0674 PF07664 Ferrous iron transport protein B C terminus dqs_0676 PF00593 TonB dependent receptor dqs_0676 PF07715 TonB-dependent Receptor Plug Domain dqs_0677 PF18331 PKHD-type hydroxylase C-terminal domain dqs_0677 PF13640 2OG-Fe(II) oxygenase superfamily dqs_0678 PF01070 FMN-dependent dehydrogenase dqs_0679 PF02321 Outer membrane efflux protein dqs_0680 PF00005 ABC transporter dqs_0680 PF12704 MacB-like periplasmic core domain dqs_0680 PF02687 FtsX-like permease family dqs_0681 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_0682 PF02472 Biopolymer transport protein ExbD/TolR dqs_0683 PF01618 MotA/TolQ/ExbB proton channel family dqs_0684 PF03544 Gram-negative bacterial TonB protein C-terminal dqs_0685 PF00210 Ferritin-like domain dqs_0686 PF04324 BFD-like [2Fe-2S] binding domain dqs_0687 PF10636 Hemin uptake protein hemP dqs_0688 PF01557 Fumarylacetoacetate (FAA) hydrolase family dqs_0691 PF08448 PAS fold dqs_0691 PF00563 EAL domain dqs_0691 PF00990 Diguanylate cyclase, GGDEF domain dqs_0691 PF08447 PAS fold dqs_0695 PF01790 Prolipoprotein diacylglyceryl transferase dqs_0696 PF04337 Protein of unknown function, DUF480 dqs_0697 PF00211 Adenylate and Guanylate cyclase catalytic domain dqs_0700 PF00672 HAMP domain dqs_0700 PF02743 Cache domain dqs_0700 PF00211 Adenylate and Guanylate cyclase catalytic domain dqs_0701 PF00920 Dehydratase family dqs_0703 PF05164 Cell division protein ZapA dqs_0707 PF02754 Cysteine-rich domain dqs_0707 PF13183 4Fe-4S dicluster domain dqs_0709 PF01297 Zinc-uptake complex component A periplasmic dqs_0710 PF00950 ABC 3 transport family dqs_0711 PF00005 ABC transporter dqs_0713 PF01475 Ferric uptake regulator family dqs_0714 PF07238 PilZ domain dqs_0715 PF03412 Peptidase C39 family dqs_0715 PF00005 ABC transporter dqs_0715 PF00664 ABC transporter transmembrane region dqs_0716 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_0716 PF00529 HlyD membrane-fusion protein of T1SS dqs_0717 PF00196 Bacterial regulatory proteins, luxR family dqs_0717 PF00072 Response regulator receiver domain dqs_0721 PF00563 EAL domain dqs_0721 PF01590 GAF domain dqs_0721 PF00990 Diguanylate cyclase, GGDEF domain dqs_0721 PF00360 Phytochrome region dqs_0723 PF02321 Outer membrane efflux protein dqs_0724 PF00512 His Kinase A (phospho-acceptor) domain dqs_0724 PF00072 Response regulator receiver domain dqs_0724 PF09308 LuxQ, periplasmic dqs_0724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0725 PF00072 Response regulator receiver domain dqs_0728 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_0728 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain dqs_0729 PF00664 ABC transporter transmembrane region dqs_0729 PF00005 ABC transporter dqs_0730 PF01863 Protein of unknown function DUF45 dqs_0732 PF01066 CDP-alcohol phosphatidyltransferase dqs_0733 PF12146 Serine aminopeptidase, S33 dqs_0733 PF12147 Putative methyltransferase dqs_0734 PF00782 Dual specificity phosphatase, catalytic domain dqs_0736 PF01553 Acyltransferase dqs_0738 PF03264 NapC/NirT cytochrome c family, N-terminal region dqs_0739 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) dqs_0740 PF00384 Molybdopterin oxidoreductase dqs_0740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_0740 PF01568 Molydopterin dinucleotide binding domain dqs_0742 PF06796 Periplasmic nitrate reductase protein NapE dqs_0744 PF02653 Branched-chain amino acid transport system / permease component dqs_0745 PF02653 Branched-chain amino acid transport system / permease component dqs_0746 PF00005 ABC transporter dqs_0746 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_0747 PF00005 ABC transporter dqs_0748 PF03466 LysR substrate binding domain dqs_0748 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0749 PF00378 Enoyl-CoA hydratase/isomerase dqs_0750 PF04341 Protein of unknown function, DUF485 dqs_0751 PF00474 Sodium:solute symporter family dqs_0752 PF00571 CBS domain dqs_0752 PF03471 Transporter associated domain dqs_0752 PF01595 Cyclin M transmembrane N-terminal domain dqs_0753 PF07729 FCD domain dqs_0753 PF00392 Bacterial regulatory proteins, gntR family dqs_0754 PF01642 Methylmalonyl-CoA mutase dqs_0754 PF02310 B12 binding domain dqs_0756 PF01039 Carboxyl transferase domain dqs_0758 PF00289 Biotin carboxylase, N-terminal domain dqs_0758 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain dqs_0758 PF02785 Biotin carboxylase C-terminal domain dqs_0759 PF00990 Diguanylate cyclase, GGDEF domain dqs_0759 PF00563 EAL domain dqs_0759 PF03707 Bacterial signalling protein N terminal repeat dqs_0760 PF00563 EAL domain dqs_0760 PF03707 Bacterial signalling protein N terminal repeat dqs_0760 PF00990 Diguanylate cyclase, GGDEF domain dqs_0761 PF04228 Putative neutral zinc metallopeptidase dqs_0763 PF00072 Response regulator receiver domain dqs_0763 PF00486 Transcriptional regulatory protein, C terminal dqs_0764 PF00512 His Kinase A (phospho-acceptor) domain dqs_0764 PF00072 Response regulator receiver domain dqs_0764 PF13188 PAS domain dqs_0764 PF08448 PAS fold dqs_0764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0765 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term dqs_0765 PF12833 Helix-turn-helix domain dqs_0766 PF01642 Methylmalonyl-CoA mutase dqs_0766 PF02310 B12 binding domain dqs_0767 PF10415 Fumarase C C-terminus dqs_0767 PF00206 Lyase dqs_0769 PF12867 DinB superfamily dqs_0769 PF03781 Sulfatase-modifying factor enzyme 1 dqs_0770 PF00933 Glycosyl hydrolase family 3 N terminal domain dqs_0771 PF06123 Inner membrane protein CreD dqs_0772 PF00512 His Kinase A (phospho-acceptor) domain dqs_0772 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0772 PF00672 HAMP domain dqs_0773 PF00486 Transcriptional regulatory protein, C terminal dqs_0773 PF00072 Response regulator receiver domain dqs_0774 PF00571 CBS domain dqs_0774 PF01769 Divalent cation transporter dqs_0774 PF03448 MgtE intracellular N domain dqs_0775 PF00912 Transglycosylase dqs_0776 PF01488 Shikimate / quinate 5-dehydrogenase dqs_0776 PF18317 Shikimate 5'-dehydrogenase C-terminal domain dqs_0776 PF08501 Shikimate dehydrogenase substrate binding domain dqs_0778 PF00773 RNB domain dqs_0779 PF13847 Methyltransferase domain dqs_0779 PF03551 Transcriptional regulator PadR-like family dqs_0780 PF05728 Uncharacterised protein family (UPF0227) dqs_0781 PF02673 Bacitracin resistance protein BacA dqs_0782 PF03692 Putative zinc- or iron-chelating domain dqs_0785 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold dqs_0785 PF04408 Helicase associated domain (HA2) dqs_0785 PF00270 DEAD/DEAH box helicase dqs_0785 PF00271 Helicase conserved C-terminal domain dqs_0785 PF11898 Domain of unknown function (DUF3418) dqs_0787 PF01250 Ribosomal protein S6 dqs_0789 PF01084 Ribosomal protein S18 dqs_0790 PF01281 Ribosomal protein L9, N-terminal domain dqs_0790 PF03948 Ribosomal protein L9, C-terminal domain dqs_0791 PF03796 DnaB-like helicase C terminal domain dqs_0791 PF00772 DnaB-like helicase N terminal domain dqs_0797 PF01494 FAD binding domain dqs_0798 PF10411 Disulfide bond isomerase protein N-terminus dqs_0798 PF13098 Thioredoxin-like domain dqs_0799 PF06725 3D domain dqs_0799 PF03562 MltA specific insert domain dqs_0802 PF00293 NUDIX domain dqs_0803 PF03884 DNA gyrase inhibitor YacG dqs_0804 PF07072 Cell division protein dqs_0805 PF01121 Dephospho-CoA kinase dqs_0807 PF03309 Type III pantothenate kinase dqs_0808 PF02237 Biotin protein ligase C terminal domain dqs_0808 PF03099 Biotin/lipoate A/B protein ligase family dqs_0809 PF00158 Sigma-54 interaction domain dqs_0809 PF02954 Bacterial regulatory protein, Fis family dqs_0809 PF00072 Response regulator receiver domain dqs_0810 PF00989 PAS fold dqs_0810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0810 PF00512 His Kinase A (phospho-acceptor) domain dqs_0815 PF02445 Quinolinate synthetase A protein dqs_0816 PF03372 Endonuclease/Exonuclease/phosphatase family dqs_0817 PF13091 PLD-like domain dqs_0818 PF13380 CoA binding domain dqs_0819 PF00749 tRNA synthetases class I (E and Q), catalytic domain dqs_0823 PF00535 Glycosyl transferase family 2 dqs_0826 PF01926 50S ribosome-binding GTPase dqs_0826 PF06071 Protein of unknown function (DUF933) dqs_0827 PF01195 Peptidyl-tRNA hydrolase dqs_0828 PF01386 Ribosomal L25p family dqs_0828 PF14693 Ribosomal protein TL5, C-terminal domain dqs_0829 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase dqs_0829 PF14572 Phosphoribosyl synthetase-associated domain dqs_0831 PF08544 GHMP kinases C terminal dqs_0831 PF00288 GHMP kinases N terminal domain dqs_0832 PF03550 Outer membrane lipoprotein LolB dqs_0834 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain dqs_0834 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain dqs_0834 PF06827 Zinc finger found in FPG and IleRS dqs_0835 PF00350 Dynamin family dqs_0836 PF00037 4Fe-4S binding domain dqs_0837 PF01467 Cytidylyltransferase-like dqs_0839 PF05193 Peptidase M16 inactive domain dqs_0839 PF00675 Insulinase (Peptidase family M16) dqs_0840 PF05193 Peptidase M16 inactive domain dqs_0840 PF00675 Insulinase (Peptidase family M16) dqs_0841 PF02881 SRP54-type protein, helical bundle domain dqs_0841 PF00448 SRP54-type protein, GTPase domain dqs_0842 PF00005 ABC transporter dqs_0843 PF18075 FtsX extracellular domain dqs_0844 PF10417 C-terminal domain of 1-Cys peroxiredoxin dqs_0844 PF00578 AhpC/TSA family dqs_0845 PF13192 Thioredoxin domain dqs_0845 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_0848 PF01938 TRAM domain dqs_0848 PF00919 Uncharacterized protein family UPF0004 dqs_0848 PF04055 Radical SAM superfamily dqs_0849 PF02562 PhoH-like protein dqs_0850 PF02130 Uncharacterized protein family UPF0054 dqs_0851 PF03471 Transporter associated domain dqs_0851 PF00571 CBS domain dqs_0852 PF00795 Carbon-nitrogen hydrolase dqs_0854 PF00873 AcrB/AcrD/AcrF family dqs_0855 PF02091 Glycyl-tRNA synthetase alpha subunit dqs_0856 PF02092 Glycyl-tRNA synthetase beta subunit dqs_0856 PF05746 DALR anticodon binding domain dqs_0858 PF01553 Acyltransferase dqs_0860 PF00378 Enoyl-CoA hydratase/isomerase dqs_0861 PF03968 OstA-like protein dqs_0864 PF01380 SIS domain dqs_0864 PF00571 CBS domain dqs_0865 PF00999 Sodium/hydrogen exchanger family dqs_0865 PF02080 TrkA-C domain dqs_0865 PF02254 TrkA-N domain dqs_0867 PF07963 Prokaryotic N-terminal methylation motif dqs_0867 PF08334 Type II secretion system (T2SS), protein G dqs_0872 PF00482 Type II secretion system (T2SS), protein F dqs_0873 PF00437 Type II/IV secretion system protein dqs_0875 PF00263 Bacterial type II and III secretion system protein dqs_0875 PF03958 Bacterial type II/III secretion system short domain dqs_0876 PF00005 ABC transporter dqs_0877 PF02405 Permease MlaE dqs_0878 PF02470 MlaD protein dqs_0879 PF04333 MlaA lipoprotein dqs_0882 PF00005 ABC transporter dqs_0883 PF01061 ABC-2 type transporter dqs_0885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) dqs_0886 PF01272 Transcription elongation factor, GreA/GreB, C-term dqs_0886 PF14760 Rnk N-terminus dqs_0887 PF01634 ATP phosphoribosyltransferase dqs_0888 PF00815 Histidinol dehydrogenase dqs_0889 PF00155 Aminotransferase class I and II dqs_0890 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain dqs_0890 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain dqs_0891 PF01515 Phosphate acetyl/butaryl transferase dqs_0891 PF00390 Malic enzyme, N-terminal domain dqs_0891 PF03949 Malic enzyme, NAD binding domain dqs_0893 PF00768 D-alanyl-D-alanine carboxypeptidase dqs_0894 PF01614 Bacterial transcriptional regulator dqs_0894 PF09339 IclR helix-turn-helix domain dqs_0896 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain dqs_0896 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain dqs_0898 PF01479 S4 domain dqs_0898 PF00849 RNA pseudouridylate synthase dqs_0899 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit dqs_0903 PF00005 ABC transporter dqs_0903 PF02687 FtsX-like permease family dqs_0903 PF12704 MacB-like periplasmic core domain dqs_0904 PF02687 FtsX-like permease family dqs_0904 PF12704 MacB-like periplasmic core domain dqs_0904 PF00005 ABC transporter dqs_0905 PF00005 ABC transporter dqs_0905 PF02687 FtsX-like permease family dqs_0905 PF12704 MacB-like periplasmic core domain dqs_0907 PF00749 tRNA synthetases class I (E and Q), catalytic domain dqs_0907 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain dqs_0908 PF02537 CrcB-like protein, Camphor Resistance (CrcB) dqs_0909 PF00691 OmpA family dqs_0910 PF00176 SNF2 family N-terminal domain dqs_0910 PF12419 SNF2 Helicase protein dqs_0910 PF00271 Helicase conserved C-terminal domain dqs_0911 PF01964 Radical SAM ThiC family dqs_0911 PF13667 ThiC-associated domain dqs_0912 PF08543 Phosphomethylpyrimidine kinase dqs_0913 PF00194 Eukaryotic-type carbonic anhydrase dqs_0914 PF00392 Bacterial regulatory proteins, gntR family dqs_0914 PF00155 Aminotransferase class I and II dqs_0916 PF00440 Bacterial regulatory proteins, tetR family dqs_0918 PF00873 AcrB/AcrD/AcrF family dqs_0920 PF00581 Rhodanese-like domain dqs_0920 PF01206 Sulfurtransferase TusA dqs_0921 PF02321 Outer membrane efflux protein dqs_0922 PF00534 Glycosyl transferases group 1 dqs_0922 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) dqs_0923 PF01370 NAD dependent epimerase/dehydratase family dqs_0924 PF00149 Calcineurin-like phosphoesterase dqs_0925 PF01553 Acyltransferase dqs_0927 PF13439 Glycosyltransferase Family 4 dqs_0927 PF00534 Glycosyl transferases group 1 dqs_0928 PF00294 pfkB family carbohydrate kinase dqs_0930 PF01219 Prokaryotic diacylglycerol kinase dqs_0933 PF02785 Biotin carboxylase C-terminal domain dqs_0933 PF00289 Biotin carboxylase, N-terminal domain dqs_0933 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain dqs_0935 PF00364 Biotin-requiring enzyme dqs_0936 PF01220 Dehydroquinase class II dqs_0937 PF00578 AhpC/TSA family dqs_0939 PF01225 Mur ligase family, catalytic domain dqs_0939 PF02875 Mur ligase family, glutamate ligase domain dqs_0939 PF08245 Mur ligase middle domain dqs_0940 PF04972 BON domain dqs_0941 PF13580 SIS domain dqs_0942 PF02021 Uncharacterised protein family UPF0102 dqs_0943 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_0944 PF01979 Amidohydrolase family dqs_0946 PF02381 MraZ protein, putative antitoxin-like dqs_0947 PF01795 MraW methylase family dqs_0949 PF03717 Penicillin-binding Protein dimerisation domain dqs_0949 PF00905 Penicillin binding protein transpeptidase domain dqs_0950 PF02875 Mur ligase family, glutamate ligase domain dqs_0950 PF01225 Mur ligase family, catalytic domain dqs_0950 PF08245 Mur ligase middle domain dqs_0951 PF02875 Mur ligase family, glutamate ligase domain dqs_0951 PF08245 Mur ligase middle domain dqs_0951 PF01225 Mur ligase family, catalytic domain dqs_0952 PF00953 Glycosyl transferase family 4 dqs_0952 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 dqs_0953 PF08245 Mur ligase middle domain dqs_0954 PF01098 Cell cycle protein dqs_0955 PF03033 Glycosyltransferase family 28 N-terminal domain dqs_0955 PF04101 Glycosyltransferase family 28 C-terminal domain dqs_0956 PF08245 Mur ligase middle domain dqs_0956 PF01225 Mur ligase family, catalytic domain dqs_0956 PF02875 Mur ligase family, glutamate ligase domain dqs_0957 PF01820 D-ala D-ala ligase N-terminus dqs_0957 PF07478 D-ala D-ala ligase C-terminus dqs_0958 PF03799 Cell division protein FtsQ dqs_0958 PF08478 POTRA domain, FtsQ-type dqs_0959 PF02491 SHS2 domain inserted in FTSA dqs_0960 PF12327 FtsZ family, C-terminal domain dqs_0960 PF00091 Tubulin/FtsZ family, GTPase domain dqs_0961 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase dqs_0964 PF01043 SecA preprotein cross-linking domain dqs_0964 PF02810 SEC-C motif dqs_0964 PF07516 SecA Wing and Scaffold domain dqs_0964 PF07517 SecA DEAD-like domain dqs_0966 PF01960 ArgJ family dqs_0969 PF00069 Protein kinase domain dqs_0969 PF03793 PASTA domain dqs_0971 PF04379 ApaG domain dqs_0972 PF08328 Adenylosuccinate lyase C-terminal dqs_0972 PF00206 Lyase dqs_0974 PF02355 Protein export membrane protein dqs_0974 PF07549 SecD/SecF GG Motif dqs_0975 PF07549 SecD/SecF GG Motif dqs_0975 PF02355 Protein export membrane protein dqs_0975 PF13721 SecD export protein N-terminal TM region dqs_0976 PF02699 Preprotein translocase subunit dqs_0978 PF01702 Queuine tRNA-ribosyltransferase dqs_0979 PF02547 Queuosine biosynthesis protein dqs_0981 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_0981 PF03466 LysR substrate binding domain dqs_0983 PF01027 Inhibitor of apoptosis-promoting Bax1 dqs_0984 PF02254 TrkA-N domain dqs_0984 PF00999 Sodium/hydrogen exchanger family dqs_0985 PF01595 Cyclin M transmembrane N-terminal domain dqs_0985 PF03471 Transporter associated domain dqs_0985 PF00571 CBS domain dqs_0986 PF03741 Integral membrane protein TerC family dqs_0987 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit dqs_0988 PF09179 TilS substrate binding domain dqs_0988 PF11734 TilS substrate C-terminal domain dqs_0988 PF01171 PP-loop family dqs_0989 PF00196 Bacterial regulatory proteins, luxR family dqs_0989 PF00072 Response regulator receiver domain dqs_0990 PF00989 PAS fold dqs_0990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_0990 PF00512 His Kinase A (phospho-acceptor) domain dqs_0991 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_0992 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component dqs_0993 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_0994 PF09335 SNARE associated Golgi protein dqs_0995 PF00334 Nucleoside diphosphate kinase dqs_0996 PF04055 Radical SAM superfamily dqs_0999 PF04551 GcpE protein dqs_1000 PF03129 Anticodon binding domain dqs_1000 PF13393 Histidyl-tRNA synthetase dqs_1001 PF09976 Tetratricopeptide repeat-like domain dqs_1002 PF13360 PQQ-like domain dqs_1003 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal dqs_1003 PF01926 50S ribosome-binding GTPase dqs_1004 PF17209 Hfq protein dqs_1005 PF16360 GTP-binding GTPase Middle Region dqs_1005 PF13167 GTP-binding GTPase N-terminal dqs_1005 PF01926 50S ribosome-binding GTPase dqs_1006 PF12221 Bacterial membrane protein N terminal dqs_1006 PF01145 SPFH domain / Band 7 family dqs_1007 PF01145 SPFH domain / Band 7 family dqs_1008 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) dqs_1009 PF13393 Histidyl-tRNA synthetase dqs_1010 PF00709 Adenylosuccinate synthetase dqs_1013 PF08461 Ribonuclease R winged-helix domain dqs_1013 PF00575 S1 RNA binding domain dqs_1013 PF08206 Ribonuclease B OB domain dqs_1013 PF17876 Cold shock domain dqs_1013 PF00773 RNB domain dqs_1014 PF08032 RNA 2'-O ribose methyltransferase substrate binding dqs_1014 PF00588 SpoU rRNA Methylase family dqs_1015 PF08376 Nitrate and nitrite sensing dqs_1015 PF03861 ANTAR domain dqs_1017 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1018 PF00005 ABC transporter dqs_1019 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_1020 PF04324 BFD-like [2Fe-2S] binding domain dqs_1020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain dqs_1020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain dqs_1020 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_1020 PF18267 Rubredoxin NAD+ reductase C-terminal domain dqs_1021 PF04324 BFD-like [2Fe-2S] binding domain dqs_1021 PF01568 Molydopterin dinucleotide binding domain dqs_1021 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_1021 PF00384 Molybdopterin oxidoreductase dqs_1022 PF02203 Tar ligand binding domain homologue dqs_1022 PF00672 HAMP domain dqs_1022 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_1024 PF00990 Diguanylate cyclase, GGDEF domain dqs_1024 PF03707 Bacterial signalling protein N terminal repeat dqs_1024 PF00563 EAL domain dqs_1026 PF01396 Topoisomerase DNA binding C4 zinc finger dqs_1027 PF00881 Nitroreductase family dqs_1028 PF00258 Flavodoxin dqs_1029 PF02535 ZIP Zinc transporter dqs_1031 PF12170 DNA polymerase III tau subunit V interacting with alpha dqs_1031 PF12169 DNA polymerase III subunits gamma and tau domain III dqs_1031 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding dqs_1032 PF02575 YbaB/EbfC DNA-binding family dqs_1033 PF13662 Toprim domain dqs_1033 PF02132 RecR protein dqs_1034 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal dqs_1034 PF00355 Rieske [2Fe-2S] domain dqs_1035 PF00033 Cytochrome b/b6/petB dqs_1035 PF00032 Cytochrome b(C-terminal)/b6/petD dqs_1036 PF02167 Cytochrome C1 family dqs_1037 PF00043 Glutathione S-transferase, C-terminal domain dqs_1037 PF02798 Glutathione S-transferase, N-terminal domain dqs_1039 PF13439 Glycosyltransferase Family 4 dqs_1039 PF00534 Glycosyl transferases group 1 dqs_1041 PF01266 FAD dependent oxidoreductase dqs_1042 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain dqs_1045 PF02653 Branched-chain amino acid transport system / permease component dqs_1046 PF00005 ABC transporter dqs_1047 PF00166 Chaperonin 10 Kd subunit dqs_1048 PF00118 TCP-1/cpn60 chaperonin family dqs_1049 PF00072 Response regulator receiver domain dqs_1049 PF00486 Transcriptional regulatory protein, C terminal dqs_1050 PF08521 Two-component sensor kinase N-terminal dqs_1050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1050 PF00512 His Kinase A (phospho-acceptor) domain dqs_1051 PF04341 Protein of unknown function, DUF485 dqs_1052 PF00474 Sodium:solute symporter family dqs_1053 PF00486 Transcriptional regulatory protein, C terminal dqs_1053 PF00072 Response regulator receiver domain dqs_1078 PF01527 Transposase dqs_1081 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain dqs_1081 PF01488 Shikimate / quinate 5-dehydrogenase dqs_1081 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain dqs_1082 PF03462 PCRF domain dqs_1082 PF00472 RF-1 domain dqs_1083 PF05175 Methyltransferase small domain dqs_1083 PF17827 PrmC N-terminal domain dqs_1084 PF00462 Glutaredoxin dqs_1089 PF00069 Protein kinase domain dqs_1089 PF03793 PASTA domain dqs_1090 PF14698 Argininosuccinate lyase C-terminal dqs_1090 PF00206 Lyase dqs_1091 PF07694 5TMR of 5TMR-LYT dqs_1091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1091 PF06580 Histidine kinase dqs_1092 PF00072 Response regulator receiver domain dqs_1092 PF04397 LytTr DNA-binding domain dqs_1093 PF00311 Phosphoenolpyruvate carboxylase dqs_1094 PF03900 Porphobilinogen deaminase, C-terminal domain dqs_1094 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain dqs_1095 PF02602 Uroporphyrinogen-III synthase HemD dqs_1096 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase dqs_1098 PF00392 Bacterial regulatory proteins, gntR family dqs_1098 PF07729 FCD domain dqs_1099 PF02913 FAD linked oxidases, C-terminal domain dqs_1099 PF01565 FAD binding domain dqs_1101 PF01565 FAD binding domain dqs_1102 PF02754 Cysteine-rich domain dqs_1102 PF13183 4Fe-4S dicluster domain dqs_1104 PF05222 Alanine dehydrogenase/PNT, N-terminal domain dqs_1104 PF01262 Alanine dehydrogenase/PNT, C-terminal domain dqs_1105 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch dqs_1106 PF02233 NAD(P) transhydrogenase beta subunit dqs_1108 PF00990 Diguanylate cyclase, GGDEF domain dqs_1108 PF00563 EAL domain dqs_1108 PF03707 Bacterial signalling protein N terminal repeat dqs_1109 PF00271 Helicase conserved C-terminal domain dqs_1109 PF00270 DEAD/DEAH box helicase dqs_1110 PF01728 FtsJ-like methyltransferase dqs_1110 PF18125 RlmM ferredoxin-like domain dqs_1111 PF00248 Aldo/keto reductase family dqs_1113 PF13416 Bacterial extracellular solute-binding protein dqs_1114 PF03009 Glycerophosphoryl diester phosphodiesterase family dqs_1115 PF00348 Polyprenyl synthetase dqs_1117 PF03466 LysR substrate binding domain dqs_1117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1118 PF01070 FMN-dependent dehydrogenase dqs_1119 PF13525 Outer membrane lipoprotein dqs_1120 PF00849 RNA pseudouridylate synthase dqs_1123 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus dqs_1124 PF00106 short chain dehydrogenase dqs_1125 PF00106 short chain dehydrogenase dqs_1126 PF07879 PHB/PHA accumulation regulator DNA-binding domain dqs_1126 PF05233 PHB accumulation regulatory domain dqs_1127 PF00919 Uncharacterized protein family UPF0004 dqs_1127 PF18693 TRAM domain dqs_1127 PF04055 Radical SAM superfamily dqs_1128 PF01734 Patatin-like phospholipase dqs_1129 PF01565 FAD binding domain dqs_1129 PF02913 FAD linked oxidases, C-terminal domain dqs_1136 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_1136 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_1137 PF07497 Rho termination factor, RNA-binding domain dqs_1137 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain dqs_1137 PF07498 Rho termination factor, N-terminal domain dqs_1138 PF00085 Thioredoxin dqs_1139 PF11953 Domain of unknown function (DUF3470) dqs_1139 PF00037 4Fe-4S binding domain dqs_1141 PF00501 AMP-binding enzyme dqs_1141 PF13193 AMP-binding enzyme C-terminal domain dqs_1142 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain dqs_1142 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain dqs_1142 PF00205 Thiamine pyrophosphate enzyme, central domain dqs_1143 PF01842 ACT domain dqs_1144 PF01264 Chorismate synthase dqs_1145 PF12832 MFS_1 like family dqs_1146 PF01435 Peptidase family M48 dqs_1146 PF07720 Tetratricopeptide repeat dqs_1147 PF00330 Aconitase family (aconitate hydratase) dqs_1148 PF00694 Aconitase C-terminal domain dqs_1149 PF00180 Isocitrate/isopropylmalate dehydrogenase dqs_1150 PF02774 Semialdehyde dehydrogenase, dimerisation domain dqs_1150 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_1153 PF01416 tRNA pseudouridine synthase dqs_1154 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase dqs_1155 PF00291 Pyridoxal-phosphate dependent enzyme dqs_1156 PF00290 Tryptophan synthase alpha chain dqs_1157 PF17848 Acetyl-coA carboxylase zinc finger domain dqs_1157 PF01039 Carboxyl transferase domain dqs_1158 PF02875 Mur ligase family, glutamate ligase domain dqs_1158 PF08245 Mur ligase middle domain dqs_1159 PF05036 Sporulation related domain dqs_1161 PF00156 Phosphoribosyl transferase domain dqs_1162 PF01053 Cys/Met metabolism PLP-dependent enzyme dqs_1163 PF00149 Calcineurin-like phosphoesterase dqs_1164 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD dqs_1165 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD dqs_1168 PF09190 DALR domain dqs_1168 PF01406 tRNA synthetases class I (C) catalytic domain dqs_1170 PF00684 DnaJ central domain dqs_1170 PF01556 DnaJ C terminal domain dqs_1170 PF00226 DnaJ domain dqs_1171 PF00012 Hsp70 protein dqs_1172 PF01025 GrpE dqs_1174 PF00521 DNA gyrase/topoisomerase IV, subunit A dqs_1174 PF03989 DNA gyrase C-terminal domain, beta-propeller dqs_1175 PF00266 Aminotransferase class-V dqs_1176 PF00800 Prephenate dehydratase dqs_1176 PF01817 Chorismate mutase type II dqs_1176 PF01842 ACT domain dqs_1178 PF02153 Prephenate dehydrogenase dqs_1178 PF01842 ACT domain dqs_1179 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) dqs_1180 PF00575 S1 RNA binding domain dqs_1181 PF00216 Bacterial DNA-binding protein dqs_1183 PF18073 Rubredoxin metal binding domain dqs_1184 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dqs_1184 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain dqs_1184 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain dqs_1185 PF00291 Pyridoxal-phosphate dependent enzyme dqs_1188 PF03129 Anticodon binding domain dqs_1188 PF02824 TGS domain dqs_1188 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) dqs_1188 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain dqs_1189 PF05198 Translation initiation factor IF-3, N-terminal domain dqs_1189 PF00707 Translation initiation factor IF-3, C-terminal domain dqs_1190 PF01632 Ribosomal protein L35 dqs_1191 PF00453 Ribosomal protein L20 dqs_1192 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain dqs_1192 PF01409 tRNA synthetases class II core domain (F) dqs_1193 PF03483 B3/4 domain dqs_1193 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain dqs_1193 PF01588 Putative tRNA binding domain dqs_1193 PF03147 Ferredoxin-fold anticodon binding domain dqs_1193 PF03484 tRNA synthetase B5 domain dqs_1194 PF00216 Bacterial DNA-binding protein dqs_1197 PF01975 Survival protein SurE dqs_1199 PF01551 Peptidase family M23 dqs_1199 PF01476 LysM domain dqs_1200 PF00140 Sigma-70 factor, region 1.2 dqs_1200 PF04539 Sigma-70 region 3 dqs_1200 PF04542 Sigma-70 region 2 dqs_1200 PF04545 Sigma-70, region 4 dqs_1201 PF13406 Transglycosylase SLT domain dqs_1202 PF01841 Transglutaminase-like superfamily dqs_1202 PF13559 Domain of unknown function (DUF4129) dqs_1202 PF11992 Domain of unknown function (DUF3488) dqs_1204 PF07726 ATPase family associated with various cellular activities (AAA) dqs_1204 PF17863 AAA lid domain dqs_1205 PF00850 Histone deacetylase domain dqs_1206 PF00701 Dihydrodipicolinate synthetase family dqs_1207 PF06804 NlpB/DapX lipoprotein dqs_1209 PF08007 Cupin superfamily protein dqs_1210 PF01938 TRAM domain dqs_1210 PF05958 tRNA (Uracil-5-)-methyltransferase dqs_1212 PF00849 RNA pseudouridylate synthase dqs_1214 PF01312 FlhB HrpN YscU SpaS Family dqs_1215 PF00771 FHIPEP family dqs_1216 PF00448 SRP54-type protein, GTPase domain dqs_1218 PF04545 Sigma-70, region 4 dqs_1218 PF04542 Sigma-70 region 2 dqs_1218 PF04539 Sigma-70 region 3 dqs_1219 PF01618 MotA/TolQ/ExbB proton channel family dqs_1220 PF00672 HAMP domain dqs_1220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_1221 PF00691 OmpA family dqs_1221 PF13677 Membrane MotB of proton-channel complex MotA/MotB dqs_1222 PF01814 Hemerythrin HHE cation binding domain dqs_1223 PF00521 DNA gyrase/topoisomerase IV, subunit A dqs_1226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1226 PF01751 Toprim domain dqs_1226 PF00204 DNA gyrase B dqs_1226 PF00986 DNA gyrase B subunit, carboxyl terminus dqs_1227 PF03458 UPF0126 domain dqs_1228 PF00463 Isocitrate lyase family dqs_1229 PF12833 Helix-turn-helix domain dqs_1229 PF14525 AraC-binding-like domain dqs_1233 PF00866 Ring hydroxylating beta subunit dqs_1234 PF00355 Rieske [2Fe-2S] domain dqs_1234 PF00848 Ring hydroxylating alpha subunit (catalytic domain) dqs_1235 PF00175 Oxidoreductase NAD-binding domain dqs_1235 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_1236 PF02653 Branched-chain amino acid transport system / permease component dqs_1237 PF11862 Domain of unknown function (DUF3382) dqs_1237 PF02653 Branched-chain amino acid transport system / permease component dqs_1238 PF00005 ABC transporter dqs_1238 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_1239 PF00005 ABC transporter dqs_1241 PF03737 Aldolase/RraA dqs_1243 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_1243 PF17871 AAA lid domain dqs_1243 PF07724 AAA domain (Cdc48 subfamily) dqs_1243 PF02861 Clp amino terminal domain, pathogenicity island component dqs_1243 PF00004 ATPase family associated with various cellular activities (AAA) dqs_1244 PF02617 ATP-dependent Clp protease adaptor protein ClpS dqs_1245 PF00313 'Cold-shock' DNA-binding domain dqs_1246 PF00471 Ribosomal protein L33 dqs_1247 PF00830 Ribosomal L28 family dqs_1248 PF04002 RadC-like JAB domain dqs_1249 PF02441 Flavoprotein dqs_1249 PF04127 DNA / pantothenate metabolism flavoprotein dqs_1250 PF00692 dUTPase dqs_1251 PF00293 NUDIX domain dqs_1251 PF13344 Haloacid dehalogenase-like hydrolase dqs_1252 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_1252 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding dqs_1252 PF10518 TAT (twin-arginine translocation) pathway signal sequence dqs_1256 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) dqs_1257 PF03971 Monomeric isocitrate dehydrogenase dqs_1258 PF00180 Isocitrate/isopropylmalate dehydrogenase dqs_1260 PF14492 Elongation Factor G, domain II dqs_1260 PF00679 Elongation factor G C-terminus dqs_1260 PF03764 Elongation factor G, domain IV dqs_1260 PF00009 Elongation factor Tu GTP binding domain dqs_1260 PF03144 Elongation factor Tu domain 2 dqs_1262 PF04172 LrgB-like family dqs_1266 PF03060 Nitronate monooxygenase dqs_1267 PF01274 Malate synthase dqs_1268 PF01925 Sulfite exporter TauE/SafE dqs_1269 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1269 PF03466 LysR substrate binding domain dqs_1270 PF05161 MOFRL family dqs_1270 PF13660 Domain of unknown function (DUF4147) dqs_1271 PF01261 Xylose isomerase-like TIM barrel dqs_1273 PF02652 L-lactate permease dqs_1275 PF02589 LUD domain dqs_1275 PF13183 4Fe-4S dicluster domain dqs_1275 PF11870 Domain of unknown function (DUF3390) dqs_1276 PF02589 LUD domain dqs_1277 PF02754 Cysteine-rich domain dqs_1278 PF00392 Bacterial regulatory proteins, gntR family dqs_1278 PF07729 FCD domain dqs_1288 PF04324 BFD-like [2Fe-2S] binding domain dqs_1288 PF01077 Nitrite and sulphite reductase 4Fe-4S domain dqs_1288 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain dqs_1288 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_1288 PF18267 Rubredoxin NAD+ reductase C-terminal domain dqs_1289 PF13806 Rieske-like [2Fe-2S] domain dqs_1290 PF01226 Formate/nitrite transporter dqs_1291 PF03793 PASTA domain dqs_1291 PF00069 Protein kinase domain dqs_1292 PF04115 Ureidoglycolate lyase dqs_1293 PF03561 Allantoicase repeat dqs_1295 PF01014 Uricase dqs_1295 PF09349 OHCU decarboxylase dqs_1297 PF00576 HIUase/Transthyretin family dqs_1298 PF00561 alpha/beta hydrolase fold dqs_1299 PF07804 HipA-like C-terminal domain dqs_1299 PF13657 HipA N-terminal domain dqs_1301 PF12706 Beta-lactamase superfamily domain dqs_1302 PF03070 TENA/THI-4/PQQC family dqs_1303 PF05402 Coenzyme PQQ synthesis protein D (PqqD) dqs_1304 PF13186 Iron-sulfur cluster-binding domain dqs_1304 PF04055 Radical SAM superfamily dqs_1308 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_1309 PF07690 Major Facilitator Superfamily dqs_1310 PF00202 Aminotransferase class-III dqs_1311 PF00296 Luciferase-like monooxygenase dqs_1312 PF02649 Type I GTP cyclohydrolase folE2 dqs_1313 PF13292 1-deoxy-D-xylulose-5-phosphate synthase dqs_1313 PF02779 Transketolase, pyrimidine binding domain dqs_1313 PF02780 Transketolase, C-terminal domain dqs_1314 PF00348 Polyprenyl synthetase dqs_1315 PF02609 Exonuclease VII small subunit dqs_1317 PF02401 LytB protein dqs_1318 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase dqs_1319 PF01252 Signal peptidase (SPase) II dqs_1320 PF06827 Zinc finger found in FPG and IleRS dqs_1320 PF08264 Anticodon-binding domain of tRNA dqs_1320 PF00133 tRNA synthetases class I (I, L, M and V) dqs_1321 PF06574 FAD synthetase dqs_1321 PF01687 Riboflavin kinase dqs_1323 PF00753 Metallo-beta-lactamase superfamily dqs_1323 PF16123 Hydroxyacylglutathione hydrolase C-terminus dqs_1325 PF07683 Cobalamin synthesis protein cobW C-terminal domain dqs_1325 PF02492 CobW/HypB/UreG, nucleotide-binding domain dqs_1330 PF01297 Zinc-uptake complex component A periplasmic dqs_1331 PF00005 ABC transporter dqs_1332 PF00950 ABC 3 transport family dqs_1333 PF00950 ABC 3 transport family dqs_1334 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_1335 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_1335 PF00970 Oxidoreductase FAD-binding domain dqs_1335 PF00175 Oxidoreductase NAD-binding domain dqs_1336 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_1337 PF02406 MmoB/DmpM family dqs_1338 PF00118 TCP-1/cpn60 chaperonin family dqs_1340 PF02954 Bacterial regulatory protein, Fis family dqs_1340 PF00158 Sigma-54 interaction domain dqs_1340 PF13426 PAS domain dqs_1341 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_1343 PF05199 GMC oxidoreductase dqs_1343 PF00732 GMC oxidoreductase dqs_1346 PF02322 Cytochrome bd terminal oxidase subunit II dqs_1347 PF01654 Cytochrome bd terminal oxidase subunit I dqs_1349 PF00072 Response regulator receiver domain dqs_1349 PF02954 Bacterial regulatory protein, Fis family dqs_1349 PF00158 Sigma-54 interaction domain dqs_1350 PF00355 Rieske [2Fe-2S] domain dqs_1350 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal dqs_1351 PF00005 ABC transporter dqs_1351 PF00664 ABC transporter transmembrane region dqs_1353 PF01494 FAD binding domain dqs_1355 PF13186 Iron-sulfur cluster-binding domain dqs_1355 PF04055 Radical SAM superfamily dqs_1356 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit dqs_1358 PF11741 AMIN domain dqs_1358 PF01520 N-acetylmuramoyl-L-alanine amidase dqs_1359 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE dqs_1360 PF08331 Domain of unknown function (DUF1730) dqs_1361 PF13378 Enolase C-terminal domain-like dqs_1362 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1362 PF03466 LysR substrate binding domain dqs_1363 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal dqs_1363 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_1366 PF12392 Collagenase dqs_1366 PF01136 Peptidase family U32 dqs_1368 PF07995 Glucose / Sorbosone dehydrogenase dqs_1369 PF03707 Bacterial signalling protein N terminal repeat dqs_1369 PF00990 Diguanylate cyclase, GGDEF domain dqs_1369 PF13188 PAS domain dqs_1369 PF00563 EAL domain dqs_1370 PF13416 Bacterial extracellular solute-binding protein dqs_1371 PF00069 Protein kinase domain dqs_1371 PF03793 PASTA domain dqs_1374 PF07687 Peptidase dimerisation domain dqs_1374 PF01546 Peptidase family M20/M25/M40 dqs_1376 PF04536 TPM domain dqs_1377 PF04011 LemA family dqs_1378 PF07311 Dodecin dqs_1381 PF00226 DnaJ domain dqs_1381 PF01556 DnaJ C terminal domain dqs_1382 PF03061 Thioesterase superfamily dqs_1383 PF09905 DNA-binding protein VF530 dqs_1384 PF02222 ATP-grasp domain dqs_1384 PF01370 NAD dependent epimerase/dehydratase family dqs_1388 PF00005 ABC transporter dqs_1389 PF02405 Permease MlaE dqs_1390 PF00005 ABC transporter dqs_1390 PF12848 ABC transporter dqs_1391 PF01209 ubiE/COQ5 methyltransferase family dqs_1392 PF00255 Glutathione peroxidase dqs_1393 PF03707 Bacterial signalling protein N terminal repeat dqs_1393 PF00990 Diguanylate cyclase, GGDEF domain dqs_1393 PF00563 EAL domain dqs_1394 PF00034 Cytochrome c dqs_1394 PF14376 Haem-binding domain dqs_1394 PF03150 Di-haem cytochrome c peroxidase dqs_1395 PF00175 Oxidoreductase NAD-binding domain dqs_1395 PF00970 Oxidoreductase FAD-binding domain dqs_1396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1396 PF03466 LysR substrate binding domain dqs_1397 PF00535 Glycosyl transferase family 2 dqs_1397 PF03552 Cellulose synthase dqs_1397 PF07238 PilZ domain dqs_1400 PF02347 Glycine cleavage system P-protein dqs_1401 PF01597 Glycine cleavage H-protein dqs_1402 PF01571 Aminomethyltransferase folate-binding domain dqs_1402 PF08669 Glycine cleavage T-protein C-terminal barrel domain dqs_1408 PF07690 Major Facilitator Superfamily dqs_1409 PF00069 Protein kinase domain dqs_1409 PF03793 PASTA domain dqs_1413 PF03710 Glutamate-ammonia ligase adenylyltransferase dqs_1413 PF08335 GlnD PII-uridylyltransferase dqs_1415 PF00795 Carbon-nitrogen hydrolase dqs_1416 PF01523 Putative modulator of DNA gyrase dqs_1427 PF04717 Type VI secretion system, phage-baseplate injector dqs_1432 PF05958 tRNA (Uracil-5-)-methyltransferase dqs_1433 PF03831 PhnA domain dqs_1433 PF08274 PhnA Zinc-Ribbon dqs_1435 PF03649 Uncharacterised protein family (UPF0014) dqs_1436 PF08402 TOBE domain dqs_1436 PF00005 ABC transporter dqs_1439 PF13649 Methyltransferase domain dqs_1446 PF13180 PDZ domain dqs_1447 PF01926 50S ribosome-binding GTPase dqs_1447 PF13167 GTP-binding GTPase N-terminal dqs_1447 PF16360 GTP-binding GTPase Middle Region dqs_1449 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_1449 PF01464 Transglycosylase SLT domain dqs_1450 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1451 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1452 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_1453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1453 PF03466 LysR substrate binding domain dqs_1454 PF00005 ABC transporter dqs_1454 PF12857 TOBE-like domain dqs_1455 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1456 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1458 PF13406 Transglycosylase SLT domain dqs_1459 PF00106 short chain dehydrogenase dqs_1462 PF00115 Cytochrome C and Quinol oxidase polypeptide I dqs_1465 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP dqs_1465 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_1466 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase dqs_1466 PF12801 4Fe-4S binding domain dqs_1466 PF13746 4Fe-4S dicluster domain dqs_1472 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus dqs_1472 PF00561 alpha/beta hydrolase fold dqs_1473 PF00027 Cyclic nucleotide-binding domain dqs_1473 PF13545 Crp-like helix-turn-helix domain dqs_1474 PF06969 HemN C-terminal domain dqs_1474 PF04055 Radical SAM superfamily dqs_1476 PF00376 MerR family regulatory protein dqs_1476 PF09278 MerR, DNA binding dqs_1477 PF00403 Heavy-metal-associated domain dqs_1478 PF00403 Heavy-metal-associated domain dqs_1479 PF00563 EAL domain dqs_1479 PF03707 Bacterial signalling protein N terminal repeat dqs_1479 PF00990 Diguanylate cyclase, GGDEF domain dqs_1480 PF00719 Inorganic pyrophosphatase dqs_1482 PF00795 Carbon-nitrogen hydrolase dqs_1482 PF02540 NAD synthase dqs_1483 PF00543 Nitrogen regulatory protein P-II dqs_1484 PF01713 Smr domain dqs_1485 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_1486 PF13545 Crp-like helix-turn-helix domain dqs_1486 PF00027 Cyclic nucleotide-binding domain dqs_1487 PF17854 FtsK alpha domain dqs_1487 PF09397 Ftsk gamma domain dqs_1487 PF01580 FtsK/SpoIIIE family dqs_1487 PF13491 4TM region of DNA translocase FtsK/SpoIIIE dqs_1488 PF03548 Outer membrane lipoprotein carrier protein LolA dqs_1489 PF16193 AAA C-terminal domain dqs_1489 PF00004 ATPase family associated with various cellular activities (AAA) dqs_1489 PF12002 MgsA AAA+ ATPase C terminal dqs_1491 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) dqs_1491 PF02403 Seryl-tRNA synthetase N-terminal domain dqs_1492 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_1492 PF00672 HAMP domain dqs_1492 PF12729 Four helix bundle sensory module for signal transduction dqs_1493 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_1493 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain dqs_1494 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) dqs_1494 PF00364 Biotin-requiring enzyme dqs_1494 PF02817 e3 binding domain dqs_1495 PF17831 Pyruvate dehydrogenase E1 component middle domain dqs_1495 PF00456 Transketolase, thiamine diphosphate binding domain dqs_1497 PF00989 PAS fold dqs_1497 PF00512 His Kinase A (phospho-acceptor) domain dqs_1497 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1498 PF00072 Response regulator receiver domain dqs_1498 PF00196 Bacterial regulatory proteins, luxR family dqs_1499 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain dqs_1499 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain dqs_1500 PF00731 AIR carboxylase dqs_1501 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain dqs_1501 PF02222 ATP-grasp domain dqs_1502 PF03481 Putative GTP-binding controlling metal-binding dqs_1502 PF01300 Telomere recombination dqs_1504 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain dqs_1504 PF00117 Glutamine amidotransferase class-I dqs_1505 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain dqs_1505 PF02142 MGS-like domain dqs_1505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain dqs_1506 PF01272 Transcription elongation factor, GreA/GreB, C-term dqs_1506 PF03449 Transcription elongation factor, N-terminal dqs_1508 PF01985 CRS1 / YhbY (CRM) domain dqs_1509 PF01728 FtsJ-like methyltransferase dqs_1510 PF01434 Peptidase family M41 dqs_1510 PF00004 ATPase family associated with various cellular activities (AAA) dqs_1510 PF17862 AAA+ lid domain dqs_1510 PF06480 FtsH Extracellular dqs_1511 PF00809 Pterin binding enzyme dqs_1512 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I dqs_1512 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II dqs_1512 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dqs_1512 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain dqs_1513 PF12849 PBP superfamily domain dqs_1514 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1515 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1516 PF00005 ABC transporter dqs_1517 PF00121 Triosephosphate isomerase dqs_1518 PF03840 Preprotein translocase SecG subunit dqs_1520 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 dqs_1521 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit dqs_1522 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit dqs_1523 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit dqs_1525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_1525 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_1525 PF10531 SLBB domain dqs_1526 PF00384 Molybdopterin oxidoreductase dqs_1526 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region dqs_1526 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal dqs_1527 PF00146 NADH dehydrogenase dqs_1528 PF12838 4Fe-4S dicluster domain dqs_1529 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 dqs_1530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L dqs_1531 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus dqs_1531 PF00361 Proton-conducting membrane transporter dqs_1532 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus dqs_1532 PF00361 Proton-conducting membrane transporter dqs_1533 PF00361 Proton-conducting membrane transporter dqs_1534 PF00293 NUDIX domain dqs_1535 PF00317 Ribonucleotide reductase, all-alpha domain dqs_1535 PF03477 ATP cone domain dqs_1535 PF02867 Ribonucleotide reductase, barrel domain dqs_1536 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_1536 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_1537 PF12838 4Fe-4S dicluster domain dqs_1537 PF00384 Molybdopterin oxidoreductase dqs_1537 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region dqs_1537 PF01568 Molydopterin dinucleotide binding domain dqs_1537 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_1538 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit dqs_1539 PF00374 Nickel-dependent hydrogenase dqs_1542 PF01545 Cation efflux family dqs_1546 PF01053 Cys/Met metabolism PLP-dependent enzyme dqs_1548 PF01272 Transcription elongation factor, GreA/GreB, C-term dqs_1548 PF03449 Transcription elongation factor, N-terminal dqs_1549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1549 PF00183 Hsp90 protein dqs_1550 PF00654 Voltage gated chloride channel dqs_1551 PF01047 MarR family dqs_1552 PF01613 Flavin reductase like domain dqs_1552 PF00258 Flavodoxin dqs_1555 PF00004 ATPase family associated with various cellular activities (AAA) dqs_1555 PF07724 AAA domain (Cdc48 subfamily) dqs_1555 PF17871 AAA lid domain dqs_1555 PF02861 Clp amino terminal domain, pathogenicity island component dqs_1555 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_1556 PF00034 Cytochrome c dqs_1557 PF00034 Cytochrome c dqs_1559 PF00633 Helix-hairpin-helix motif dqs_1559 PF10576 Iron-sulfur binding domain of endonuclease III dqs_1559 PF00730 HhH-GPD superfamily base excision DNA repair protein dqs_1560 PF02508 Rnf-Nqr subunit, membrane protein dqs_1561 PF04205 FMN-binding domain dqs_1562 PF03116 NQR2, RnfD, RnfE family dqs_1563 PF13375 RnfC Barrel sandwich hybrid domain dqs_1563 PF10531 SLBB domain dqs_1563 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_1563 PF13237 4Fe-4S dicluster domain dqs_1564 PF04060 Putative Fe-S cluster dqs_1565 PF02508 Rnf-Nqr subunit, membrane protein dqs_1568 PF00990 Diguanylate cyclase, GGDEF domain dqs_1568 PF00072 Response regulator receiver domain dqs_1569 PF03707 Bacterial signalling protein N terminal repeat dqs_1569 PF00563 EAL domain dqs_1569 PF00990 Diguanylate cyclase, GGDEF domain dqs_1570 PF05247 Flagellar transcriptional activator (FlhD) dqs_1571 PF05280 Flagellar transcriptional activator (FlhC) dqs_1572 PF01618 MotA/TolQ/ExbB proton channel family dqs_1573 PF00691 OmpA family dqs_1573 PF13677 Membrane MotB of proton-channel complex MotA/MotB dqs_1574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1574 PF00072 Response regulator receiver domain dqs_1574 PF01627 Hpt domain dqs_1574 PF01584 CheW-like domain dqs_1575 PF01627 Hpt domain dqs_1575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1575 PF09078 CheY binding dqs_1575 PF01584 CheW-like domain dqs_1575 PF02895 Signal transducing histidine kinase, homodimeric domain dqs_1576 PF01584 CheW-like domain dqs_1577 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_1577 PF00672 HAMP domain dqs_1577 PF02203 Tar ligand binding domain homologue dqs_1578 PF01739 CheR methyltransferase, SAM binding domain dqs_1578 PF03705 CheR methyltransferase, all-alpha domain dqs_1579 PF01339 CheB methylesterase dqs_1579 PF00072 Response regulator receiver domain dqs_1580 PF08447 PAS fold dqs_1580 PF13426 PAS domain dqs_1580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_1581 PF00072 Response regulator receiver domain dqs_1581 PF01584 CheW-like domain dqs_1582 PF01584 CheW-like domain dqs_1582 PF00072 Response regulator receiver domain dqs_1583 PF00072 Response regulator receiver domain dqs_1584 PF04344 Chemotaxis phosphatase, CheZ dqs_1585 PF01584 CheW-like domain dqs_1585 PF02895 Signal transducing histidine kinase, homodimeric domain dqs_1585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1585 PF01627 Hpt domain dqs_1585 PF07194 P2 response regulator binding domain dqs_1587 PF00923 Transaldolase/Fructose-6-phosphate aldolase dqs_1588 PF04287 tRNA pseudouridine synthase C dqs_1588 PF00849 RNA pseudouridylate synthase dqs_1589 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain dqs_1589 PF02777 Iron/manganese superoxide dismutases, C-terminal domain dqs_1590 PF13742 OB-fold nucleic acid binding domain dqs_1590 PF02601 Exonuclease VII, large subunit dqs_1591 PF01618 MotA/TolQ/ExbB proton channel family dqs_1592 PF02472 Biopolymer transport protein ExbD/TolR dqs_1593 PF02606 Tetraacyldisaccharide-1-P 4'-kinase dqs_1594 PF03966 Trm112p-like protein dqs_1595 PF02348 Cytidylyltransferase dqs_1596 PF05191 Adenylate kinase, active site lid dqs_1597 PF00365 Phosphofructokinase dqs_1599 PF08448 PAS fold dqs_1599 PF00990 Diguanylate cyclase, GGDEF domain dqs_1599 PF00563 EAL domain dqs_1600 PF02525 Flavodoxin-like fold dqs_1602 PF00749 tRNA synthetases class I (E and Q), catalytic domain dqs_1605 PF01266 FAD dependent oxidoreductase dqs_1605 PF05430 S-adenosyl-L-methionine-dependent methyltransferase dqs_1606 PF02872 5'-nucleotidase, C-terminal domain dqs_1606 PF00746 LPXTG cell wall anchor motif dqs_1606 PF00149 Calcineurin-like phosphoesterase dqs_1606 PF00565 Staphylococcal nuclease homologue dqs_1609 PF00563 EAL domain dqs_1609 PF10442 FIST C domain dqs_1609 PF08495 FIST N domain dqs_1609 PF00990 Diguanylate cyclase, GGDEF domain dqs_1610 PF01336 OB-fold nucleic acid binding domain dqs_1610 PF00152 tRNA synthetases class II (D, K and N) dqs_1612 PF01661 Macro domain dqs_1613 PF00563 EAL domain dqs_1613 PF00990 Diguanylate cyclase, GGDEF domain dqs_1613 PF03707 Bacterial signalling protein N terminal repeat dqs_1614 PF00072 Response regulator receiver domain dqs_1615 PF00989 PAS fold dqs_1615 PF13188 PAS domain dqs_1615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1615 PF00512 His Kinase A (phospho-acceptor) domain dqs_1616 PF01435 Peptidase family M48 dqs_1617 PF02463 RecF/RecN/SMC N terminal domain dqs_1617 PF06470 SMC proteins Flexible Hinge Domain dqs_1620 PF03462 PCRF domain dqs_1620 PF00472 RF-1 domain dqs_1622 PF01230 HIT domain dqs_1626 PF00072 Response regulator receiver domain dqs_1626 PF00196 Bacterial regulatory proteins, luxR family dqs_1627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1627 PF07730 Histidine kinase dqs_1628 PF17768 RecJ OB domain dqs_1628 PF01368 DHH family dqs_1628 PF02272 DHHA1 domain dqs_1630 PF11842 Domain of unknown function (DUF3362) dqs_1630 PF04055 Radical SAM superfamily dqs_1630 PF08497 Radical SAM N-terminal dqs_1632 PF02687 FtsX-like permease family dqs_1632 PF12704 MacB-like periplasmic core domain dqs_1633 PF00005 ABC transporter dqs_1635 PF00753 Metallo-beta-lactamase superfamily dqs_1635 PF03772 Competence protein dqs_1636 PF00561 alpha/beta hydrolase fold dqs_1637 PF14403 Circularly permuted ATP-grasp type 2 dqs_1638 PF04168 A predicted alpha-helical domain with a conserved ER motif. dqs_1638 PF14403 Circularly permuted ATP-grasp type 2 dqs_1639 PF03193 RsgA GTPase dqs_1640 PF01435 Peptidase family M48 dqs_1641 PF00929 Exonuclease dqs_1642 PF00342 Phosphoglucose isomerase dqs_1644 PF01197 Ribosomal protein L31 dqs_1645 PF01207 Dihydrouridine synthase (Dus) dqs_1646 PF02390 Putative methyltransferase dqs_1648 PF03692 Putative zinc- or iron-chelating domain dqs_1649 PF03692 Putative zinc- or iron-chelating domain dqs_1656 PF00694 Aconitase C-terminal domain dqs_1656 PF00330 Aconitase family (aconitate hydratase) dqs_1657 PF00330 Aconitase family (aconitate hydratase) dqs_1657 PF06434 Aconitate hydratase 2 N-terminus dqs_1657 PF11791 Aconitate B N-terminal domain dqs_1658 PF00563 EAL domain dqs_1658 PF00990 Diguanylate cyclase, GGDEF domain dqs_1658 PF03707 Bacterial signalling protein N terminal repeat dqs_1662 PF00676 Dehydrogenase E1 component dqs_1663 PF00364 Biotin-requiring enzyme dqs_1663 PF02780 Transketolase, C-terminal domain dqs_1663 PF02779 Transketolase, pyrimidine binding domain dqs_1665 PF07690 Major Facilitator Superfamily dqs_1666 PF03466 LysR substrate binding domain dqs_1666 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1667 PF00990 Diguanylate cyclase, GGDEF domain dqs_1667 PF00563 EAL domain dqs_1667 PF03707 Bacterial signalling protein N terminal repeat dqs_1670 PF00056 lactate/malate dehydrogenase, NAD binding domain dqs_1670 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain dqs_1671 PF07702 UTRA domain dqs_1671 PF00392 Bacterial regulatory proteins, gntR family dqs_1674 PF00890 FAD binding domain dqs_1674 PF02910 Fumarate reductase flavoprotein C-term dqs_1675 PF13085 2Fe-2S iron-sulfur cluster binding domain dqs_1676 PF03937 Flavinator of succinate dehydrogenase dqs_1677 PF00285 Citrate synthase, C-terminal domain dqs_1678 PF02779 Transketolase, pyrimidine binding domain dqs_1678 PF16870 2-oxoglutarate dehydrogenase C-terminal dqs_1678 PF00676 Dehydrogenase E1 component dqs_1678 PF16078 2-oxoglutarate dehydrogenase N-terminus dqs_1679 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) dqs_1679 PF00364 Biotin-requiring enzyme dqs_1679 PF02817 e3 binding domain dqs_1680 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_1680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain dqs_1681 PF11339 Protein of unknown function (DUF3141) dqs_1682 PF03969 AFG1-like ATPase dqs_1683 PF13307 Helicase C-terminal domain dqs_1683 PF04851 Type III restriction enzyme, res subunit dqs_1684 PF03205 Molybdopterin guanine dinucleotide synthesis protein B dqs_1685 PF03454 MoeA C-terminal region (domain IV) dqs_1685 PF00994 Probable molybdopterin binding domain dqs_1685 PF03453 MoeA N-terminal region (domain I and II) dqs_1686 PF02597 ThiS family dqs_1687 PF02391 MoaE protein dqs_1689 PF17871 AAA lid domain dqs_1689 PF07724 AAA domain (Cdc48 subfamily) dqs_1689 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_1689 PF02861 Clp amino terminal domain, pathogenicity island component dqs_1689 PF00004 ATPase family associated with various cellular activities (AAA) dqs_1690 PF03707 Bacterial signalling protein N terminal repeat dqs_1690 PF00563 EAL domain dqs_1690 PF00990 Diguanylate cyclase, GGDEF domain dqs_1693 PF01062 Bestrophin, RFP-TM, chloride channel dqs_1694 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle dqs_1695 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1696 PF00528 Binding-protein-dependent transport system inner membrane component dqs_1696 PF12911 N-terminal TM domain of oligopeptide transport permease C dqs_1697 PF02696 Uncharacterized ACR, YdiU/UPF0061 family dqs_1699 PF01668 SmpB protein dqs_1700 PF03364 Polyketide cyclase / dehydrase and lipid transport dqs_1701 PF03658 RnfH family Ubiquitin dqs_1703 PF00571 CBS domain dqs_1703 PF00478 IMP dehydrogenase / GMP reductase domain dqs_1704 PF00117 Glutamine amidotransferase class-I dqs_1704 PF02540 NAD synthase dqs_1704 PF00958 GMP synthase C terminal domain dqs_1705 PF03466 LysR substrate binding domain dqs_1705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1706 PF02525 Flavodoxin-like fold dqs_1707 PF02954 Bacterial regulatory protein, Fis family dqs_1707 PF00158 Sigma-54 interaction domain dqs_1707 PF00072 Response regulator receiver domain dqs_1710 PF00672 HAMP domain dqs_1710 PF18698 Histidine kinase sensor domain dqs_1710 PF00512 His Kinase A (phospho-acceptor) domain dqs_1710 PF00989 PAS fold dqs_1710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1711 PF14437 MafB19-like deaminase dqs_1712 PF03734 L,D-transpeptidase catalytic domain dqs_1712 PF01476 LysM domain dqs_1716 PF01571 Aminomethyltransferase folate-binding domain dqs_1717 PF02618 YceG-like family dqs_1718 PF02223 Thymidylate kinase dqs_1719 PF09115 DNA polymerase III, delta subunit, C terminal dqs_1721 PF01026 TatD related DNase dqs_1724 PF00850 Histone deacetylase domain dqs_1725 PF08379 Bacterial transglutaminase-like N-terminal region dqs_1725 PF01841 Transglutaminase-like superfamily dqs_1726 PF04168 A predicted alpha-helical domain with a conserved ER motif. dqs_1726 PF14403 Circularly permuted ATP-grasp type 2 dqs_1728 PF07687 Peptidase dimerisation domain dqs_1728 PF01546 Peptidase family M20/M25/M40 dqs_1730 PF04055 Radical SAM superfamily dqs_1730 PF06463 Molybdenum Cofactor Synthesis C dqs_1732 PF13654 AAA domain dqs_1732 PF05362 Lon protease (S16) C-terminal proteolytic domain dqs_1735 PF00155 Aminotransferase class I and II dqs_1736 PF00271 Helicase conserved C-terminal domain dqs_1736 PF04851 Type III restriction enzyme, res subunit dqs_1736 PF02151 UvrB/uvrC motif dqs_1736 PF12344 Ultra-violet resistance protein B dqs_1736 PF17757 UvrB interaction domain dqs_1737 PF01451 Low molecular weight phosphotyrosine protein phosphatase dqs_1738 PF12111 Polyribonucleotide phosphorylase C terminal dqs_1738 PF00575 S1 RNA binding domain dqs_1738 PF10150 Ribonuclease E/G family dqs_1739 PF00849 RNA pseudouridylate synthase dqs_1739 PF01479 S4 domain dqs_1740 PF13419 Haloacid dehalogenase-like hydrolase dqs_1742 PF01343 Peptidase family S49 dqs_1743 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_1744 PF02545 Maf-like protein dqs_1745 PF02620 Large ribosomal RNA subunit accumulation protein YceD dqs_1746 PF01783 Ribosomal L32p protein family dqs_1747 PF02504 Fatty acid synthesis protein dqs_1748 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal dqs_1748 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III dqs_1749 PF00698 Acyl transferase domain dqs_1751 PF00550 Phosphopantetheine attachment site dqs_1752 PF02801 Beta-ketoacyl synthase, C-terminal domain dqs_1752 PF00109 Beta-ketoacyl synthase, N-terminal domain dqs_1754 PF00890 FAD binding domain dqs_1754 PF02910 Fumarate reductase flavoprotein C-term dqs_1755 PF08281 Sigma-70, region 4 dqs_1755 PF04542 Sigma-70 region 2 dqs_1757 PF03888 MucB/RseB N-terminal domain dqs_1757 PF17188 MucB/RseB C-terminal domain dqs_1759 PF13180 PDZ domain dqs_1761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1761 PF03466 LysR substrate binding domain dqs_1763 PF03401 Tripartite tricarboxylate transporter family receptor dqs_1764 PF06421 GTP-binding protein LepA C-terminus dqs_1764 PF03144 Elongation factor Tu domain 2 dqs_1764 PF00009 Elongation factor Tu GTP binding domain dqs_1764 PF00679 Elongation factor G C-terminus dqs_1765 PF10502 Signal peptidase, peptidase S26 dqs_1767 PF00035 Double-stranded RNA binding motif dqs_1767 PF14622 Ribonuclease-III-like dqs_1768 PF07650 KH domain dqs_1768 PF01926 50S ribosome-binding GTPase dqs_1769 PF02565 Recombination protein O C terminal dqs_1769 PF11967 Recombination protein O N terminal dqs_1770 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ dqs_1771 PF01648 4'-phosphopantetheinyl transferase superfamily dqs_1772 PF00933 Glycosyl hydrolase family 3 N terminal domain dqs_1773 PF02151 UvrB/uvrC motif dqs_1773 PF08459 UvrC Helix-hairpin-helix N-terminal dqs_1773 PF01541 GIY-YIG catalytic domain dqs_1774 PF01066 CDP-alcohol phosphatidyltransferase dqs_1802 PF00589 Phage integrase family dqs_1804 PF03776 Septum formation topological specificity factor MinE dqs_1805 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_1806 PF03775 Septum formation inhibitor MinC, C-terminal domain dqs_1806 PF05209 Septum formation inhibitor MinC, N-terminal domain dqs_1807 PF01430 Hsp33 protein dqs_1808 PF03960 ArsC family dqs_1809 PF17674 HHH domain dqs_1809 PF00575 S1 RNA binding domain dqs_1809 PF09371 Tex-like protein N-terminal domain dqs_1809 PF16921 Tex protein YqgF-like domain dqs_1810 PF01263 Aldose 1-epimerase dqs_1811 PF13380 CoA binding domain dqs_1811 PF00583 Acetyltransferase (GNAT) family dqs_1811 PF13607 Succinyl-CoA ligase like flavodoxin domain dqs_1812 PF00989 PAS fold dqs_1812 PF00512 His Kinase A (phospho-acceptor) domain dqs_1812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1814 PF00581 Rhodanese-like domain dqs_1815 PF02769 AIR synthase related protein, C-terminal domain dqs_1815 PF00586 AIR synthase related protein, N-terminal domain dqs_1816 PF13472 GDSL-like Lipase/Acylhydrolase family dqs_1817 PF00005 ABC transporter dqs_1819 PF00793 DAHP synthetase I family dqs_1821 PF00563 EAL domain dqs_1821 PF03707 Bacterial signalling protein N terminal repeat dqs_1821 PF00990 Diguanylate cyclase, GGDEF domain dqs_1822 PF01544 CorA-like Mg2+ transporter protein dqs_1823 PF00270 DEAD/DEAH box helicase dqs_1823 PF02559 CarD-like/TRCF domain dqs_1823 PF03461 TRCF domain dqs_1823 PF00271 Helicase conserved C-terminal domain dqs_1823 PF17757 UvrB interaction domain dqs_1828 PF00027 Cyclic nucleotide-binding domain dqs_1828 PF13545 Crp-like helix-turn-helix domain dqs_1829 PF01871 AMMECR1 dqs_1830 PF01875 Memo-like protein dqs_1831 PF13194 Domain of unknown function (DUF4010) dqs_1832 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase dqs_1833 PF02542 YgbB family dqs_1838 PF13291 ACT domain dqs_1838 PF04607 Region found in RelA / SpoT proteins dqs_1838 PF02824 TGS domain dqs_1839 PF17941 Polyphosphate kinase C-terminal domain 1 dqs_1839 PF13089 Polyphosphate kinase N-terminal domain dqs_1839 PF02503 Polyphosphate kinase middle domain dqs_1839 PF13090 Polyphosphate kinase C-terminal domain 2 dqs_1840 PF02541 Ppx/GppA phosphatase family dqs_1841 PF02405 Permease MlaE dqs_1842 PF00005 ABC transporter dqs_1843 PF03886 ABC-type transport auxiliary lipoprotein component dqs_1843 PF02470 MlaD protein dqs_1845 PF13193 AMP-binding enzyme C-terminal domain dqs_1845 PF00501 AMP-binding enzyme dqs_1846 PF00378 Enoyl-CoA hydratase/isomerase dqs_1847 PF01026 TatD related DNase dqs_1848 PF08361 MAATS-type transcriptional repressor, C-terminal region dqs_1848 PF00440 Bacterial regulatory proteins, tetR family dqs_1849 PF01012 Electron transfer flavoprotein domain dqs_1850 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_1850 PF01012 Electron transfer flavoprotein domain dqs_1852 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_1852 PF12806 Acetyl-CoA dehydrogenase C-terminal like dqs_1852 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_1852 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_1855 PF03795 YCII-related domain dqs_1856 PF04279 Intracellular septation protein A dqs_1858 PF00512 His Kinase A (phospho-acceptor) domain dqs_1858 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1858 PF00672 HAMP domain dqs_1859 PF00486 Transcriptional regulatory protein, C terminal dqs_1859 PF00072 Response regulator receiver domain dqs_1861 PF00814 Glycoprotease family dqs_1862 PF00583 Acetyltransferase (GNAT) family dqs_1863 PF03167 Uracil DNA glycosylase superfamily dqs_1864 PF07690 Major Facilitator Superfamily dqs_1865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1865 PF03466 LysR substrate binding domain dqs_1866 PF18073 Rubredoxin metal binding domain dqs_1873 PF10017 Histidine-specific methyltransferase, SAM-dependent dqs_1875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) dqs_1875 PF02806 Alpha amylase, C-terminal all-beta domain dqs_1875 PF00128 Alpha amylase, catalytic domain dqs_1876 PF00128 Alpha amylase, catalytic domain dqs_1876 PF11896 Domain of unknown function (DUF3416) dqs_1877 PF16657 Maltogenic Amylase, C-terminal domain dqs_1877 PF00128 Alpha amylase, catalytic domain dqs_1878 PF09411 Lipid A 3-O-deacylase (PagL) dqs_1884 PF11339 Protein of unknown function (DUF3141) dqs_1885 PF03860 Domain of Unknown Function (DUF326) dqs_1889 PF00106 short chain dehydrogenase dqs_1890 PF02735 Ku70/Ku80 beta-barrel domain dqs_1891 PF04679 ATP dependent DNA ligase C terminal region dqs_1891 PF01068 ATP dependent DNA ligase domain dqs_1891 PF13298 DNA polymerase Ligase (LigD) dqs_1895 PF02951 Prokaryotic glutathione synthetase, N-terminal domain dqs_1895 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain dqs_1898 PF00571 CBS domain dqs_1903 PF13091 PLD-like domain dqs_1907 PF00115 Cytochrome C and Quinol oxidase polypeptide I dqs_1910 PF00106 short chain dehydrogenase dqs_1912 PF01594 AI-2E family transporter dqs_1913 PF13180 PDZ domain dqs_1915 PF07043 Protein of unknown function (DUF1328) dqs_1916 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_1921 PF01654 Cytochrome bd terminal oxidase subunit I dqs_1922 PF02322 Cytochrome bd terminal oxidase subunit II dqs_1927 PF01510 N-acetylmuramoyl-L-alanine amidase dqs_1932 PF13396 Phospholipase_D-nuclease N-terminal dqs_1932 PF13091 PLD-like domain dqs_1934 PF13439 Glycosyltransferase Family 4 dqs_1934 PF00534 Glycosyl transferases group 1 dqs_1935 PF01569 PAP2 superfamily dqs_1937 PF00534 Glycosyl transferases group 1 dqs_1937 PF13439 Glycosyltransferase Family 4 dqs_1939 PF04963 Sigma-54 factor, core binding domain dqs_1939 PF04552 Sigma-54, DNA binding domain dqs_1939 PF00309 Sigma-54 factor, Activator interacting domain (AID) dqs_1942 PF15887 Putative zinc-binding metallo-peptidase dqs_1942 PF10005 zinc-ribbon domain dqs_1943 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) dqs_1943 PF00128 Alpha amylase, catalytic domain dqs_1945 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) dqs_1945 PF02806 Alpha amylase, C-terminal all-beta domain dqs_1945 PF00128 Alpha amylase, catalytic domain dqs_1946 PF00483 Nucleotidyl transferase dqs_1947 PF00128 Alpha amylase, catalytic domain dqs_1947 PF11941 Domain of unknown function (DUF3459) dqs_1947 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) dqs_1948 PF02446 4-alpha-glucanotransferase dqs_1949 PF02685 Glucokinase dqs_1950 PF08323 Starch synthase catalytic domain dqs_1950 PF00534 Glycosyl transferases group 1 dqs_1951 PF01370 NAD dependent epimerase/dehydratase family dqs_1953 PF02709 N-terminal domain of galactosyltransferase dqs_1953 PF00535 Glycosyl transferase family 2 dqs_1954 PF02543 Carbamoyltransferase N-terminus dqs_1954 PF16861 Carbamoyltransferase C-terminus dqs_1955 PF01075 Glycosyltransferase family 9 (heptosyltransferase) dqs_1958 PF13439 Glycosyltransferase Family 4 dqs_1958 PF00534 Glycosyl transferases group 1 dqs_1960 PF04239 Protein of unknown function (DUF421) dqs_1961 PF00158 Sigma-54 interaction domain dqs_1961 PF02954 Bacterial regulatory protein, Fis family dqs_1961 PF00072 Response regulator receiver domain dqs_1966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_1966 PF00512 His Kinase A (phospho-acceptor) domain dqs_1967 PF03631 Virulence factor BrkB dqs_1970 PF00005 ABC transporter dqs_1970 PF00664 ABC transporter transmembrane region dqs_1972 PF02308 MgtC family dqs_1973 PF02464 Competence-damaged protein dqs_1973 PF18146 Damage-inducible protein CinA KH domain dqs_1973 PF00994 Probable molybdopterin binding domain dqs_1975 PF16363 GDP-mannose 4,6 dehydratase dqs_1977 PF00042 Globin dqs_1977 PF00970 Oxidoreductase FAD-binding domain dqs_1977 PF00175 Oxidoreductase NAD-binding domain dqs_1979 PF00593 TonB dependent receptor dqs_1979 PF07715 TonB-dependent Receptor Plug Domain dqs_1984 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_1985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_1985 PF03466 LysR substrate binding domain dqs_1987 PF07044 Protein of unknown function (DUF1329) dqs_1991 PF00672 HAMP domain dqs_1991 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_1991 PF17200 Single Cache domain 2 dqs_1992 PF06505 Activator of aromatic catabolism dqs_1992 PF02954 Bacterial regulatory protein, Fis family dqs_1992 PF02830 V4R domain dqs_1992 PF00158 Sigma-54 interaction domain dqs_1993 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_1994 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_1995 PF06099 Phenol hydroxylase subunit dqs_1996 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_1997 PF02406 MmoB/DmpM family dqs_1998 PF04945 YHS domain dqs_1998 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_1999 PF04663 Phenol hydroxylase conserved region dqs_2000 PF00175 Oxidoreductase NAD-binding domain dqs_2000 PF00970 Oxidoreductase FAD-binding domain dqs_2000 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2005 PF00171 Aldehyde dehydrogenase family dqs_2006 PF01557 Fumarylacetoacetate (FAA) hydrolase family dqs_2008 PF01361 Tautomerase enzyme dqs_2009 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation dqs_2009 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_2010 PF07836 DmpG-like communication domain dqs_2010 PF00682 HMGL-like dqs_2011 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_2023 PF00849 RNA pseudouridylate synthase dqs_2029 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase dqs_2030 PF00483 Nucleotidyl transferase dqs_2031 PF04321 RmlD substrate binding domain dqs_2032 PF16363 GDP-mannose 4,6 dehydratase dqs_2034 PF08447 PAS fold dqs_2034 PF00990 Diguanylate cyclase, GGDEF domain dqs_2034 PF08448 PAS fold dqs_2034 PF00563 EAL domain dqs_2034 PF13426 PAS domain dqs_2034 PF05231 MASE1 dqs_2037 PF00005 ABC transporter dqs_2040 PF01593 Flavin containing amine oxidoreductase dqs_2041 PF00246 Zinc carboxypeptidase dqs_2041 PF18027 Cytosolic carboxypeptidase N-terminal domain dqs_2042 PF03883 Peroxide stress protein YaaA dqs_2043 PF00202 Aminotransferase class-III dqs_2044 PF00155 Aminotransferase class I and II dqs_2045 PF12697 Alpha/beta hydrolase family dqs_2046 PF08241 Methyltransferase domain dqs_2048 PF00588 SpoU rRNA Methylase family dqs_2048 PF08032 RNA 2'-O ribose methyltransferase substrate binding dqs_2050 PF01351 Ribonuclease HII dqs_2051 PF02684 Lipid-A-disaccharide synthetase dqs_2052 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_2052 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 dqs_2053 PF07977 FabA-like domain dqs_2054 PF14602 Hexapeptide repeat of succinyl-transferase dqs_2054 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_2054 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD dqs_2056 PF01103 Surface antigen dqs_2056 PF07244 Surface antigen variable number repeat dqs_2057 PF13180 PDZ domain dqs_2057 PF17820 PDZ domain dqs_2057 PF02163 Peptidase family M50 dqs_2058 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase dqs_2058 PF13288 DXP reductoisomerase C-terminal domain dqs_2058 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain dqs_2060 PF01255 Putative undecaprenyl diphosphate synthase dqs_2061 PF01765 Ribosome recycling factor dqs_2062 PF00696 Amino acid kinase family dqs_2063 PF00889 Elongation factor TS dqs_2064 PF00318 Ribosomal protein S2 dqs_2065 PF00557 Metallopeptidase family M24 dqs_2066 PF01966 HD domain dqs_2066 PF08335 GlnD PII-uridylyltransferase dqs_2067 PF03350 Uncharacterized protein family, UPF0114 dqs_2069 PF02954 Bacterial regulatory protein, Fis family dqs_2069 PF00072 Response regulator receiver domain dqs_2069 PF00158 Sigma-54 interaction domain dqs_2070 PF00512 His Kinase A (phospho-acceptor) domain dqs_2070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2070 PF02743 Cache domain dqs_2073 PF16868 NMT1-like family dqs_2074 PF01266 FAD dependent oxidoreductase dqs_2075 PF00171 Aldehyde dehydrogenase family dqs_2076 PF01012 Electron transfer flavoprotein domain dqs_2076 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_2077 PF01012 Electron transfer flavoprotein domain dqs_2078 PF02515 CoA-transferase family III dqs_2079 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_2079 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_2079 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_2080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2080 PF03466 LysR substrate binding domain dqs_2082 PF00378 Enoyl-CoA hydratase/isomerase dqs_2085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_2085 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_2085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_2086 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_2086 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_2086 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_2087 PF00378 Enoyl-CoA hydratase/isomerase dqs_2088 PF00106 short chain dehydrogenase dqs_2089 PF01494 FAD binding domain dqs_2090 PF01047 MarR family dqs_2091 PF12833 Helix-turn-helix domain dqs_2091 PF14525 AraC-binding-like domain dqs_2094 PF01613 Flavin reductase like domain dqs_2095 PF05661 Protein of unknown function (DUF808) dqs_2096 PF05199 GMC oxidoreductase dqs_2096 PF00732 GMC oxidoreductase dqs_2098 PF01613 Flavin reductase like domain dqs_2099 PF00296 Luciferase-like monooxygenase dqs_2100 PF14525 AraC-binding-like domain dqs_2100 PF12833 Helix-turn-helix domain dqs_2101 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_2101 PF00384 Molybdopterin oxidoreductase dqs_2101 PF01568 Molydopterin dinucleotide binding domain dqs_2102 PF13247 4Fe-4S dicluster domain dqs_2110 PF01425 Amidase dqs_2111 PF01425 Amidase dqs_2112 PF00561 alpha/beta hydrolase fold dqs_2115 PF00175 Oxidoreductase NAD-binding domain dqs_2115 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2115 PF00970 Oxidoreductase FAD-binding domain dqs_2116 PF11723 Homotrimeric ring hydroxylase dqs_2116 PF00355 Rieske [2Fe-2S] domain dqs_2117 PF01613 Flavin reductase like domain dqs_2118 PF17885 Styrene monooxygenase A putative substrate binding domain dqs_2119 PF12833 Helix-turn-helix domain dqs_2120 PF14525 AraC-binding-like domain dqs_2120 PF12833 Helix-turn-helix domain dqs_2121 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_2123 PF00561 alpha/beta hydrolase fold dqs_2124 PF00392 Bacterial regulatory proteins, gntR family dqs_2124 PF07729 FCD domain dqs_2126 PF00107 Zinc-binding dehydrogenase dqs_2126 PF08240 Alcohol dehydrogenase GroES-like domain dqs_2127 PF07836 DmpG-like communication domain dqs_2127 PF00682 HMGL-like dqs_2128 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation dqs_2128 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_2129 PF01557 Fumarylacetoacetate (FAA) hydrolase family dqs_2130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase dqs_2131 PF00364 Biotin-requiring enzyme dqs_2131 PF00561 alpha/beta hydrolase fold dqs_2132 PF11723 Homotrimeric ring hydroxylase dqs_2132 PF00355 Rieske [2Fe-2S] domain dqs_2134 PF04199 Putative cyclase dqs_2137 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2138 PF00848 Ring hydroxylating alpha subunit (catalytic domain) dqs_2138 PF00355 Rieske [2Fe-2S] domain dqs_2139 PF00866 Ring hydroxylating beta subunit dqs_2140 PF00501 AMP-binding enzyme dqs_2140 PF13193 AMP-binding enzyme C-terminal domain dqs_2142 PF00106 short chain dehydrogenase dqs_2143 PF04199 Putative cyclase dqs_2147 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_2147 PF00005 ABC transporter dqs_2148 PF00005 ABC transporter dqs_2149 PF08546 Ketopantoate reductase PanE/ApbA C terminal dqs_2149 PF02558 Ketopantoate reductase PanE/ApbA dqs_2150 PF00596 Class II Aldolase and Adducin N-terminal domain dqs_2151 PF00501 AMP-binding enzyme dqs_2151 PF13193 AMP-binding enzyme C-terminal domain dqs_2153 PF01048 Phosphorylase superfamily dqs_2155 PF00483 Nucleotidyl transferase dqs_2156 PF03119 NAD-dependent DNA ligase C4 zinc finger domain dqs_2156 PF03120 NAD-dependent DNA ligase OB-fold domain dqs_2156 PF01653 NAD-dependent DNA ligase adenylation domain dqs_2156 PF00533 BRCA1 C Terminus (BRCT) domain dqs_2156 PF12826 Helix-hairpin-helix motif dqs_2158 PF02463 RecF/RecN/SMC N terminal domain dqs_2159 PF00155 Aminotransferase class I and II dqs_2160 PF14602 Hexapeptide repeat of succinyl-transferase dqs_2160 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal dqs_2161 PF00437 Type II/IV secretion system protein dqs_2162 PF07687 Peptidase dimerisation domain dqs_2162 PF01546 Peptidase family M20/M25/M40 dqs_2163 PF05175 Methyltransferase small domain dqs_2164 PF00072 Response regulator receiver domain dqs_2165 PF04384 Iron-sulphur cluster assembly dqs_2166 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2167 PF00012 Hsp70 protein dqs_2168 PF07743 HSCB C-terminal oligomerisation domain dqs_2169 PF01521 Iron-sulphur cluster biosynthesis dqs_2170 PF01592 NifU-like N terminal domain dqs_2171 PF00266 Aminotransferase class-V dqs_2172 PF00266 Aminotransferase class-V dqs_2173 PF02082 Transcriptional regulator dqs_2174 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_2175 PF00588 SpoU rRNA Methylase family dqs_2176 PF00459 Inositol monophosphatase family dqs_2178 PF05192 MutS domain III dqs_2178 PF01624 MutS domain I dqs_2178 PF05188 MutS domain II dqs_2178 PF05190 MutS family domain IV dqs_2178 PF00488 MutS domain V dqs_2180 PF00929 Exonuclease dqs_2181 PF00075 RNase H dqs_2182 PF08241 Methyltransferase domain dqs_2183 PF16123 Hydroxyacylglutathione hydrolase C-terminus dqs_2183 PF00753 Metallo-beta-lactamase superfamily dqs_2184 PF00196 Bacterial regulatory proteins, luxR family dqs_2184 PF00072 Response regulator receiver domain dqs_2185 PF00990 Diguanylate cyclase, GGDEF domain dqs_2185 PF00360 Phytochrome region dqs_2185 PF01590 GAF domain dqs_2185 PF00563 EAL domain dqs_2186 PF01476 LysM domain dqs_2186 PF01464 Transglycosylase SLT domain dqs_2187 PF00005 ABC transporter dqs_2187 PF08352 Oligopeptide/dipeptide transporter, C-terminal region dqs_2188 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase dqs_2189 PF00578 AhpC/TSA family dqs_2190 PF00717 Peptidase S24-like dqs_2190 PF01726 LexA DNA binding domain dqs_2192 PF01554 MatE dqs_2193 PF03960 ArsC family dqs_2198 PF00004 ATPase family associated with various cellular activities (AAA) dqs_2198 PF02190 ATP-dependent protease La (LON) substrate-binding domain dqs_2198 PF05362 Lon protease (S16) C-terminal proteolytic domain dqs_2199 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_2199 PF07724 AAA domain (Cdc48 subfamily) dqs_2199 PF06689 ClpX C4-type zinc finger dqs_2200 PF00574 Clp protease dqs_2201 PF05697 Bacterial trigger factor protein (TF) dqs_2201 PF05698 Bacterial trigger factor protein (TF) C-terminus dqs_2201 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase dqs_2202 PF08298 PrkA AAA domain dqs_2202 PF06798 PrkA serine protein kinase C-terminal domain dqs_2203 PF04285 Protein of unknown function (DUF444) dqs_2204 PF04293 SpoVR like protein dqs_2205 PF01256 Carbohydrate kinase dqs_2205 PF03853 YjeF-related protein N-terminus dqs_2206 PF00072 Response regulator receiver domain dqs_2208 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain dqs_2208 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain dqs_2209 PF14821 Threonine synthase N terminus dqs_2209 PF00291 Pyridoxal-phosphate dependent enzyme dqs_2210 PF03447 Homoserine dehydrogenase, NAD binding domain dqs_2210 PF01842 ACT domain dqs_2210 PF00742 Homoserine dehydrogenase dqs_2211 PF00155 Aminotransferase class I and II dqs_2214 PF01050 Mannose-6-phosphate isomerase dqs_2214 PF00483 Nucleotidyl transferase dqs_2215 PF00196 Bacterial regulatory proteins, luxR family dqs_2217 PF07963 Prokaryotic N-terminal methylation motif dqs_2217 PF08334 Type II secretion system (T2SS), protein G dqs_2218 PF07963 Prokaryotic N-terminal methylation motif dqs_2218 PF14245 Type IV pilin PilA dqs_2219 PF00263 Bacterial type II and III secretion system protein dqs_2219 PF03958 Bacterial type II/III secretion system short domain dqs_2224 PF00437 Type II/IV secretion system protein dqs_2225 PF00482 Type II secretion system (T2SS), protein F dqs_2226 PF07963 Prokaryotic N-terminal methylation motif dqs_2226 PF08334 Type II secretion system (T2SS), protein G dqs_2227 PF01551 Peptidase family M23 dqs_2227 PF10145 Phage-related minor tail protein dqs_2227 PF01464 Transglycosylase SLT domain dqs_2229 PF00202 Aminotransferase class-III dqs_2234 PF01258 Prokaryotic dksA/traR C4-type zinc finger dqs_2235 PF00013 KH domain dqs_2235 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain dqs_2235 PF03725 3' exoribonuclease family, domain 2 dqs_2235 PF01138 3' exoribonuclease family, domain 1 dqs_2235 PF00575 S1 RNA binding domain dqs_2236 PF00312 Ribosomal protein S15 dqs_2237 PF01509 TruB family pseudouridylate synthase (N terminal domain) dqs_2237 PF16198 tRNA pseudouridylate synthase B C-terminal domain dqs_2237 PF09157 Pseudouridine synthase II TruB, C-terminal dqs_2238 PF02033 Ribosome-binding factor A dqs_2239 PF11987 Translation-initiation factor 2 dqs_2239 PF00009 Elongation factor Tu GTP binding domain dqs_2239 PF08364 Bacterial translation initiation factor IF-2 associated region dqs_2239 PF04760 Translation initiation factor IF-2, N-terminal region dqs_2240 PF13184 NusA-like KH domain dqs_2240 PF08529 NusA N-terminal domain dqs_2241 PF17384 RimP C-terminal SH3 domain dqs_2241 PF02576 RimP N-terminal domain dqs_2242 PF00849 RNA pseudouridylate synthase dqs_2242 PF01479 S4 domain dqs_2243 PF04079 Segregation and condensation complex subunit ScpB dqs_2244 PF02616 Segregation and condensation protein ScpA dqs_2245 PF02163 Peptidase family M50 dqs_2246 PF01300 Telomere recombination dqs_2247 PF02811 PHP domain dqs_2251 PF00171 Aldehyde dehydrogenase family dqs_2252 PF01926 50S ribosome-binding GTPase dqs_2253 PF00313 'Cold-shock' DNA-binding domain dqs_2254 PF00271 Helicase conserved C-terminal domain dqs_2254 PF00270 DEAD/DEAH box helicase dqs_2254 PF03880 DbpA RNA binding domain dqs_2256 PF01636 Phosphotransferase enzyme family dqs_2258 PF07152 YaeQ protein dqs_2260 PF17158 Membrane-associated sensor, integral membrane domain dqs_2260 PF00990 Diguanylate cyclase, GGDEF domain dqs_2264 PF00004 ATPase family associated with various cellular activities (AAA) dqs_2264 PF05362 Lon protease (S16) C-terminal proteolytic domain dqs_2264 PF02190 ATP-dependent protease La (LON) substrate-binding domain dqs_2265 PF01227 GTP cyclohydrolase I dqs_2267 PF01384 Phosphate transporter family dqs_2269 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ dqs_2271 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_2274 PF00877 NlpC/P60 family dqs_2275 PF00571 CBS domain dqs_2276 PF04977 Septum formation initiator dqs_2277 PF00113 Enolase, C-terminal TIM barrel domain dqs_2277 PF03952 Enolase, N-terminal domain dqs_2278 PF00793 DAHP synthetase I family dqs_2279 PF06418 CTP synthase N-terminus dqs_2279 PF00117 Glutamine amidotransferase class-I dqs_2281 PF07995 Glucose / Sorbosone dehydrogenase dqs_2282 PF00501 AMP-binding enzyme dqs_2282 PF13193 AMP-binding enzyme C-terminal domain dqs_2283 PF03061 Thioesterase superfamily dqs_2291 PF02769 AIR synthase related protein, C-terminal domain dqs_2291 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal dqs_2291 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain dqs_2292 PF01569 PAP2 superfamily dqs_2294 PF00535 Glycosyl transferase family 2 dqs_2295 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase dqs_2296 PF01569 PAP2 superfamily dqs_2299 PF08525 Opacity-associated protein A N-terminal motif dqs_2299 PF01551 Peptidase family M23 dqs_2299 PF01476 LysM domain dqs_2300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain dqs_2300 PF02896 PEP-utilising enzyme, TIM barrel domain dqs_2300 PF00391 PEP-utilising enzyme, mobile domain dqs_2301 PF03618 Kinase/pyrophosphorylase dqs_2303 PF01641 SelR domain dqs_2304 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_2304 PF00672 HAMP domain dqs_2304 PF16591 Helical bimodular sensor domain dqs_2305 PF00108 Thiolase, N-terminal domain dqs_2305 PF02803 Thiolase, C-terminal domain dqs_2306 PF17113 Regulatory signalling modulator protein AmpE dqs_2306 PF03186 CobD/Cbib protein dqs_2307 PF00293 NUDIX domain dqs_2313 PF14245 Type IV pilin PilA dqs_2313 PF07963 Prokaryotic N-terminal methylation motif dqs_2316 PF04461 Protein of unknown function (DUF520) dqs_2317 PF06865 Pyrimidine/purine nucleoside phosphorylase dqs_2319 PF00764 Arginosuccinate synthase dqs_2320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain dqs_2320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain dqs_2321 PF00202 Aminotransferase class-III dqs_2323 PF01649 Ribosomal protein S20 dqs_2324 PF03023 Lipid II flippase MurJ dqs_2326 PF01053 Cys/Met metabolism PLP-dependent enzyme dqs_2330 PF00578 AhpC/TSA family dqs_2331 PF02562 PhoH-like protein dqs_2331 PF13638 PIN domain dqs_2332 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_2332 PF08447 PAS fold dqs_2333 PF00072 Response regulator receiver domain dqs_2336 PF00877 NlpC/P60 family dqs_2338 PF13416 Bacterial extracellular solute-binding protein dqs_2339 PF00528 Binding-protein-dependent transport system inner membrane component dqs_2340 PF00005 ABC transporter dqs_2340 PF08402 TOBE domain dqs_2341 PF03588 Leucyl/phenylalanyl-tRNA protein transferase dqs_2342 PF04376 Arginine-tRNA-protein transferase, N terminus dqs_2342 PF04377 Arginine-tRNA-protein transferase, C terminus dqs_2343 PF01180 Dihydroorotate dehydrogenase dqs_2344 PF01799 [2Fe-2S] binding domain dqs_2344 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2345 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain dqs_2345 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase dqs_2350 PF07715 TonB-dependent Receptor Plug Domain dqs_2350 PF00593 TonB dependent receptor dqs_2353 PF01891 Cobalt uptake substrate-specific transmembrane region dqs_2355 PF00005 ABC transporter dqs_2356 PF01979 Amidohydrolase family dqs_2357 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 dqs_2358 PF03707 Bacterial signalling protein N terminal repeat dqs_2358 PF00990 Diguanylate cyclase, GGDEF domain dqs_2358 PF00563 EAL domain dqs_2360 PF00990 Diguanylate cyclase, GGDEF domain dqs_2360 PF03707 Bacterial signalling protein N terminal repeat dqs_2360 PF00563 EAL domain dqs_2361 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_2364 PF00483 Nucleotidyl transferase dqs_2365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain dqs_2365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dqs_2365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain dqs_2369 PF00150 Cellulase (glycosyl hydrolase family 5) dqs_2370 PF00534 Glycosyl transferases group 1 dqs_2370 PF13439 Glycosyltransferase Family 4 dqs_2373 PF13614 AAA domain dqs_2379 PF02397 Bacterial sugar transferase dqs_2381 PF00171 Aldehyde dehydrogenase family dqs_2384 PF03176 MMPL family dqs_2386 PF07044 Protein of unknown function (DUF1329) dqs_2388 PF02975 Methylamine dehydrogenase, L chain dqs_2389 PF00578 AhpC/TSA family dqs_2390 PF07291 Methylamine utilisation protein MauE dqs_2391 PF06433 Methylamine dehydrogenase heavy chain (MADH) dqs_2393 PF00392 Bacterial regulatory proteins, gntR family dqs_2393 PF07729 FCD domain dqs_2395 PF00528 Binding-protein-dependent transport system inner membrane component dqs_2396 PF00528 Binding-protein-dependent transport system inner membrane component dqs_2397 PF00005 ABC transporter dqs_2400 PF01145 SPFH domain / Band 7 family dqs_2401 PF08447 PAS fold dqs_2401 PF13426 PAS domain dqs_2401 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_2404 PF02705 K+ potassium transporter dqs_2405 PF07859 alpha/beta hydrolase fold dqs_2407 PF07722 Peptidase C26 dqs_2408 PF04107 Glutamate-cysteine ligase family 2(GCS2) dqs_2411 PF00581 Rhodanese-like domain dqs_2413 PF00258 Flavodoxin dqs_2415 PF01323 DSBA-like thioredoxin domain dqs_2416 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_2417 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_2420 PF01966 HD domain dqs_2422 PF02308 MgtC family dqs_2423 PF13230 Glutamine amidotransferases class-II dqs_2425 PF12833 Helix-turn-helix domain dqs_2425 PF02805 Metal binding domain of Ada dqs_2425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain dqs_2425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain dqs_2426 PF13532 2OG-Fe(II) oxygenase superfamily dqs_2429 PF01329 Pterin 4 alpha carbinolamine dehydratase dqs_2432 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_2432 PF18158 Adaptive response protein AidB N-terminal domain dqs_2432 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_2435 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain dqs_2435 PF00437 Type II/IV secretion system protein dqs_2437 PF07690 Major Facilitator Superfamily dqs_2439 PF00891 O-methyltransferase domain dqs_2440 PF16657 Maltogenic Amylase, C-terminal domain dqs_2440 PF00128 Alpha amylase, catalytic domain dqs_2442 PF00005 ABC transporter dqs_2442 PF06472 ABC transporter transmembrane region 2 dqs_2443 PF02685 Glucokinase dqs_2446 PF00005 ABC transporter dqs_2446 PF00664 ABC transporter transmembrane region dqs_2452 PF00534 Glycosyl transferases group 1 dqs_2452 PF13439 Glycosyltransferase Family 4 dqs_2453 PF13439 Glycosyltransferase Family 4 dqs_2453 PF00534 Glycosyl transferases group 1 dqs_2454 PF01522 Polysaccharide deacetylase dqs_2456 PF03707 Bacterial signalling protein N terminal repeat dqs_2456 PF00990 Diguanylate cyclase, GGDEF domain dqs_2456 PF00563 EAL domain dqs_2457 PF03466 LysR substrate binding domain dqs_2457 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2458 PF00158 Sigma-54 interaction domain dqs_2460 PF01618 MotA/TolQ/ExbB proton channel family dqs_2461 PF02472 Biopolymer transport protein ExbD/TolR dqs_2463 PF13533 Biotin-lipoyl like dqs_2464 PF00873 AcrB/AcrD/AcrF family dqs_2465 PF00873 AcrB/AcrD/AcrF family dqs_2466 PF02321 Outer membrane efflux protein dqs_2468 PF03572 Peptidase family S41 dqs_2468 PF11818 C-terminal domain of tail specific protease (DUF3340) dqs_2468 PF17804 Tail specific protease N-terminal domain dqs_2468 PF00595 PDZ domain dqs_2469 PF01322 Cytochrome C' dqs_2470 PF01738 Dienelactone hydrolase family dqs_2472 PF00034 Cytochrome c dqs_2477 PF07715 TonB-dependent Receptor Plug Domain dqs_2477 PF00593 TonB dependent receptor dqs_2483 PF01451 Low molecular weight phosphotyrosine protein phosphatase dqs_2484 PF01758 Sodium Bile acid symporter family dqs_2485 PF06953 Arsenical resistance operon trans-acting repressor ArsD dqs_2486 PF02374 Anion-transporting ATPase dqs_2487 PF01425 Amidase dqs_2489 PF14552 Tautomerase enzyme dqs_2490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2490 PF03466 LysR substrate binding domain dqs_2491 PF07859 alpha/beta hydrolase fold dqs_2492 PF00512 His Kinase A (phospho-acceptor) domain dqs_2492 PF00072 Response regulator receiver domain dqs_2492 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2492 PF09456 RcsC Alpha-Beta-Loop (ABL) dqs_2495 PF00166 Chaperonin 10 Kd subunit dqs_2496 PF00118 TCP-1/cpn60 chaperonin family dqs_2497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2497 PF03466 LysR substrate binding domain dqs_2501 PF04143 Sulphur transport dqs_2502 PF00581 Rhodanese-like domain dqs_2506 PF00535 Glycosyl transferase family 2 dqs_2509 PF04205 FMN-binding domain dqs_2514 PF01970 Tripartite tricarboxylate transporter TctA family dqs_2515 PF05995 Cysteine dioxygenase type I dqs_2516 PF08546 Ketopantoate reductase PanE/ApbA C terminal dqs_2516 PF02558 Ketopantoate reductase PanE/ApbA dqs_2517 PF00596 Class II Aldolase and Adducin N-terminal domain dqs_2518 PF03401 Tripartite tricarboxylate transporter family receptor dqs_2519 PF00296 Luciferase-like monooxygenase dqs_2520 PF03401 Tripartite tricarboxylate transporter family receptor dqs_2521 PF00378 Enoyl-CoA hydratase/isomerase dqs_2524 PF01970 Tripartite tricarboxylate transporter TctA family dqs_2525 PF07331 Tripartite tricarboxylate transporter TctB family dqs_2526 PF00384 Molybdopterin oxidoreductase dqs_2526 PF01568 Molydopterin dinucleotide binding domain dqs_2528 PF00005 ABC transporter dqs_2529 PF00528 Binding-protein-dependent transport system inner membrane component dqs_2530 PF09084 NMT1/THI5 like dqs_2531 PF00296 Luciferase-like monooxygenase dqs_2532 PF09084 NMT1/THI5 like dqs_2533 PF03459 TOBE domain dqs_2535 PF09084 NMT1/THI5 like dqs_2536 PF00005 ABC transporter dqs_2537 PF00528 Binding-protein-dependent transport system inner membrane component dqs_2543 PF00291 Pyridoxal-phosphate dependent enzyme dqs_2544 PF00593 TonB dependent receptor dqs_2544 PF07715 TonB-dependent Receptor Plug Domain dqs_2546 PF00072 Response regulator receiver domain dqs_2546 PF00512 His Kinase A (phospho-acceptor) domain dqs_2546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2546 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_2546 PF01627 Hpt domain dqs_2546 PF00672 HAMP domain dqs_2547 PF00360 Phytochrome region dqs_2547 PF00990 Diguanylate cyclase, GGDEF domain dqs_2547 PF01590 GAF domain dqs_2547 PF00563 EAL domain dqs_2549 PF02566 OsmC-like protein dqs_2551 PF01037 Lrp/AsnC ligand binding domain dqs_2552 PF17158 Membrane-associated sensor, integral membrane domain dqs_2552 PF00990 Diguanylate cyclase, GGDEF domain dqs_2553 PF00474 Sodium:solute symporter family dqs_2554 PF00929 Exonuclease dqs_2555 PF00072 Response regulator receiver domain dqs_2555 PF00486 Transcriptional regulatory protein, C terminal dqs_2556 PF00512 His Kinase A (phospho-acceptor) domain dqs_2556 PF18698 Histidine kinase sensor domain dqs_2556 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2556 PF00672 HAMP domain dqs_2556 PF00989 PAS fold dqs_2558 PF16177 Acetyl-coenzyme A synthetase N-terminus dqs_2558 PF13193 AMP-binding enzyme C-terminal domain dqs_2558 PF00501 AMP-binding enzyme dqs_2562 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain dqs_2562 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain dqs_2563 PF03466 LysR substrate binding domain dqs_2563 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2564 PF07883 Cupin domain dqs_2565 PF01557 Fumarylacetoacetate (FAA) hydrolase family dqs_2566 PF01494 FAD binding domain dqs_2567 PF13417 Glutathione S-transferase, N-terminal domain dqs_2568 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_2569 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_2569 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component dqs_2570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_2573 PF01361 Tautomerase enzyme dqs_2575 PF00682 HMGL-like dqs_2575 PF07836 DmpG-like communication domain dqs_2576 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation dqs_2576 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_2577 PF00106 short chain dehydrogenase dqs_2579 PF00171 Aldehyde dehydrogenase family dqs_2580 PF03928 Haem-degrading dqs_2581 PF07729 FCD domain dqs_2581 PF00392 Bacterial regulatory proteins, gntR family dqs_2582 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_2583 PF00970 Oxidoreductase FAD-binding domain dqs_2583 PF00175 Oxidoreductase NAD-binding domain dqs_2583 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2584 PF04663 Phenol hydroxylase conserved region dqs_2585 PF04945 YHS domain dqs_2585 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_2586 PF02406 MmoB/DmpM family dqs_2587 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_2588 PF06099 Phenol hydroxylase subunit dqs_2589 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2590 PF02954 Bacterial regulatory protein, Fis family dqs_2590 PF00158 Sigma-54 interaction domain dqs_2590 PF02830 V4R domain dqs_2590 PF06505 Activator of aromatic catabolism dqs_2592 PF01494 FAD binding domain dqs_2593 PF00072 Response regulator receiver domain dqs_2594 PF00512 His Kinase A (phospho-acceptor) domain dqs_2594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2594 PF01627 Hpt domain dqs_2594 PF00989 PAS fold dqs_2594 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_2594 PF00072 Response regulator receiver domain dqs_2595 PF00106 short chain dehydrogenase dqs_2599 PF00072 Response regulator receiver domain dqs_2599 PF00486 Transcriptional regulatory protein, C terminal dqs_2600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2600 PF00512 His Kinase A (phospho-acceptor) domain dqs_2600 PF00989 PAS fold dqs_2601 PF00672 HAMP domain dqs_2601 PF00512 His Kinase A (phospho-acceptor) domain dqs_2601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2602 PF00196 Bacterial regulatory proteins, luxR family dqs_2602 PF00072 Response regulator receiver domain dqs_2612 PF00155 Aminotransferase class I and II dqs_2612 PF00392 Bacterial regulatory proteins, gntR family dqs_2614 PF01070 FMN-dependent dehydrogenase dqs_2617 PF00171 Aldehyde dehydrogenase family dqs_2618 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain dqs_2618 PF00205 Thiamine pyrophosphate enzyme, central domain dqs_2618 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain dqs_2619 PF03466 LysR substrate binding domain dqs_2619 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2620 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase dqs_2620 PF12801 4Fe-4S binding domain dqs_2620 PF13746 4Fe-4S dicluster domain dqs_2621 PF00158 Sigma-54 interaction domain dqs_2621 PF02954 Bacterial regulatory protein, Fis family dqs_2621 PF01590 GAF domain dqs_2624 PF18113 Rubredoxin binding C-terminal domain dqs_2624 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_2625 PF00005 ABC transporter dqs_2626 PF00528 Binding-protein-dependent transport system inner membrane component dqs_2627 PF00005 ABC transporter dqs_2628 PF02560 Cyanate lyase C-terminal domain dqs_2630 PF00753 Metallo-beta-lactamase superfamily dqs_2635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_2635 PF00672 HAMP domain dqs_2635 PF00072 Response regulator receiver domain dqs_2635 PF01627 Hpt domain dqs_2635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2635 PF00512 His Kinase A (phospho-acceptor) domain dqs_2637 PF00072 Response regulator receiver domain dqs_2639 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain dqs_2639 PF00391 PEP-utilising enzyme, mobile domain dqs_2640 PF17754 MftR C-terminal domain dqs_2640 PF00440 Bacterial regulatory proteins, tetR family dqs_2642 PF03600 Citrate transporter dqs_2642 PF02080 TrkA-C domain dqs_2643 PF00085 Thioredoxin dqs_2644 PF01012 Electron transfer flavoprotein domain dqs_2644 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_2645 PF01012 Electron transfer flavoprotein domain dqs_2647 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_2647 PF12806 Acetyl-CoA dehydrogenase C-terminal like dqs_2647 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_2647 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_2649 PF00106 short chain dehydrogenase dqs_2650 PF02803 Thiolase, C-terminal domain dqs_2650 PF00108 Thiolase, N-terminal domain dqs_2651 PF00378 Enoyl-CoA hydratase/isomerase dqs_2652 PF13193 AMP-binding enzyme C-terminal domain dqs_2652 PF00501 AMP-binding enzyme dqs_2654 PF00005 ABC transporter dqs_2655 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_2655 PF00005 ABC transporter dqs_2657 PF00440 Bacterial regulatory proteins, tetR family dqs_2657 PF17932 Tetracyclin repressor-like, C-terminal domain dqs_2658 PF16925 Tetracyclin repressor-like, C-terminal domain dqs_2658 PF00440 Bacterial regulatory proteins, tetR family dqs_2664 PF04183 IucA / IucC family dqs_2664 PF06276 Ferric iron reductase FhuF-like transporter dqs_2667 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) dqs_2668 PF07715 TonB-dependent Receptor Plug Domain dqs_2668 PF00593 TonB dependent receptor dqs_2671 PF00355 Rieske [2Fe-2S] domain dqs_2672 PF13577 SnoaL-like domain dqs_2673 PF00848 Ring hydroxylating alpha subunit (catalytic domain) dqs_2673 PF00355 Rieske [2Fe-2S] domain dqs_2674 PF00175 Oxidoreductase NAD-binding domain dqs_2674 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2674 PF00970 Oxidoreductase FAD-binding domain dqs_2675 PF03466 LysR substrate binding domain dqs_2675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2676 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_2679 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase dqs_2681 PF03466 LysR substrate binding domain dqs_2681 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2682 PF00563 EAL domain dqs_2682 PF03707 Bacterial signalling protein N terminal repeat dqs_2682 PF00990 Diguanylate cyclase, GGDEF domain dqs_2684 PF00067 Cytochrome P450 dqs_2685 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_2686 PF14759 Reductase C-terminal dqs_2686 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_2687 PF00753 Metallo-beta-lactamase superfamily dqs_2688 PF00117 Glutamine amidotransferase class-I dqs_2690 PF00700 Bacterial flagellin C-terminal helical region dqs_2690 PF08884 Flagellin D3 domain dqs_2690 PF00669 Bacterial flagellin N-terminal helical region dqs_2692 PF00248 Aldo/keto reductase family dqs_2693 PF01408 Oxidoreductase family, NAD-binding Rossmann fold dqs_2694 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase dqs_2695 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit dqs_2696 PF04909 Amidohydrolase dqs_2698 PF03737 Aldolase/RraA dqs_2699 PF04909 Amidohydrolase dqs_2700 PF07690 Major Facilitator Superfamily dqs_2701 PF04303 PrpF protein dqs_2702 PF07690 Major Facilitator Superfamily dqs_2704 PF03466 LysR substrate binding domain dqs_2704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_2705 PF00672 HAMP domain dqs_2705 PF12729 Four helix bundle sensory module for signal transduction dqs_2707 PF01966 HD domain dqs_2707 PF12627 Probable RNA and SrmB- binding site of polymerase A dqs_2707 PF01743 Poly A polymerase head domain dqs_2710 PF00437 Type II/IV secretion system protein dqs_2721 PF00034 Cytochrome c dqs_2721 PF03150 Di-haem cytochrome c peroxidase dqs_2723 PF08281 Sigma-70, region 4 dqs_2723 PF04542 Sigma-70 region 2 dqs_2727 PF08448 PAS fold dqs_2727 PF00563 EAL domain dqs_2727 PF00990 Diguanylate cyclase, GGDEF domain dqs_2728 PF03466 LysR substrate binding domain dqs_2728 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2729 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_2729 PF00529 HlyD membrane-fusion protein of T1SS dqs_2730 PF00873 AcrB/AcrD/AcrF family dqs_2731 PF02321 Outer membrane efflux protein dqs_2735 PF12833 Helix-turn-helix domain dqs_2736 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_2736 PF00672 HAMP domain dqs_2736 PF01627 Hpt domain dqs_2736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2736 PF00512 His Kinase A (phospho-acceptor) domain dqs_2736 PF00072 Response regulator receiver domain dqs_2737 PF01113 Dihydrodipicolinate reductase, N-terminus dqs_2737 PF05173 Dihydrodipicolinate reductase, C-terminus dqs_2738 PF04355 SmpA / OmlA family dqs_2739 PF01475 Ferric uptake regulator family dqs_2740 PF02463 RecF/RecN/SMC N terminal domain dqs_2741 PF01513 ATP-NAD kinase dqs_2742 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding dqs_2742 PF01628 HrcA protein C terminal domain dqs_2743 PF00762 Ferrochelatase dqs_2744 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV dqs_2746 PF03793 PASTA domain dqs_2746 PF00069 Protein kinase domain dqs_2747 PF01979 Amidohydrolase family dqs_2748 PF00691 OmpA family dqs_2761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_2761 PF03466 LysR substrate binding domain dqs_2763 PF01176 Translation initiation factor 1A / IF-1 dqs_2764 PF00313 'Cold-shock' DNA-binding domain dqs_2765 PF00892 EamA-like transporter family dqs_2768 PF02558 Ketopantoate reductase PanE/ApbA dqs_2768 PF08546 Ketopantoate reductase PanE/ApbA C terminal dqs_2769 PF00596 Class II Aldolase and Adducin N-terminal domain dqs_2771 PF00593 TonB dependent receptor dqs_2771 PF07715 TonB-dependent Receptor Plug Domain dqs_2773 PF08447 PAS fold dqs_2773 PF05231 MASE1 dqs_2773 PF00990 Diguanylate cyclase, GGDEF domain dqs_2773 PF08448 PAS fold dqs_2773 PF13426 PAS domain dqs_2773 PF00563 EAL domain dqs_2778 PF13419 Haloacid dehalogenase-like hydrolase dqs_2779 PF13411 MerR HTH family regulatory protein dqs_2780 PF01209 ubiE/COQ5 methyltransferase family dqs_2783 PF00990 Diguanylate cyclase, GGDEF domain dqs_2783 PF00072 Response regulator receiver domain dqs_2786 PF02514 CobN/Magnesium Chelatase dqs_2786 PF11965 Domain of unknown function (DUF3479) dqs_2789 PF13649 Methyltransferase domain dqs_2792 PF13419 Haloacid dehalogenase-like hydrolase dqs_2793 PF01738 Dienelactone hydrolase family dqs_2795 PF00990 Diguanylate cyclase, GGDEF domain dqs_2795 PF00072 Response regulator receiver domain dqs_2799 PF01384 Phosphate transporter family dqs_2802 PF02694 Uncharacterised BCR, YnfA/UPF0060 family dqs_2803 PF00970 Oxidoreductase FAD-binding domain dqs_2803 PF00175 Oxidoreductase NAD-binding domain dqs_2806 PF01161 Phosphatidylethanolamine-binding protein dqs_2809 PF00578 AhpC/TSA family dqs_2809 PF10417 C-terminal domain of 1-Cys peroxiredoxin dqs_2814 PF00724 NADH:flavin oxidoreductase / NADH oxidase family dqs_2815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_2817 PF00072 Response regulator receiver domain dqs_2817 PF00196 Bacterial regulatory proteins, luxR family dqs_2818 PF00989 PAS fold dqs_2818 PF00512 His Kinase A (phospho-acceptor) domain dqs_2818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2820 PF03707 Bacterial signalling protein N terminal repeat dqs_2820 PF00563 EAL domain dqs_2820 PF00990 Diguanylate cyclase, GGDEF domain dqs_2823 PF05981 CreA protein dqs_2826 PF00990 Diguanylate cyclase, GGDEF domain dqs_2827 PF17158 Membrane-associated sensor, integral membrane domain dqs_2827 PF00990 Diguanylate cyclase, GGDEF domain dqs_2828 PF00669 Bacterial flagellin N-terminal helical region dqs_2828 PF00700 Bacterial flagellin C-terminal helical region dqs_2829 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family dqs_2832 PF00535 Glycosyl transferase family 2 dqs_2834 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain dqs_2834 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain dqs_2835 PF00465 Iron-containing alcohol dehydrogenase dqs_2836 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase dqs_2837 PF00535 Glycosyl transferase family 2 dqs_2837 PF00534 Glycosyl transferases group 1 dqs_2839 PF00669 Bacterial flagellin N-terminal helical region dqs_2839 PF00700 Bacterial flagellin C-terminal helical region dqs_2840 PF03646 FlaG protein dqs_2841 PF07195 Flagellar hook-associated protein 2 C-terminus dqs_2841 PF02465 Flagellar hook-associated protein 2 N-terminus dqs_2842 PF02561 Flagellar protein FliS dqs_2845 PF01312 FlhB HrpN YscU SpaS Family dqs_2846 PF07238 PilZ domain dqs_2846 PF07317 Flagellar regulator YcgR dqs_2847 PF03707 Bacterial signalling protein N terminal repeat dqs_2847 PF00990 Diguanylate cyclase, GGDEF domain dqs_2847 PF00563 EAL domain dqs_2848 PF02049 Flagellar hook-basal body complex protein FliE dqs_2849 PF00158 Sigma-54 interaction domain dqs_2849 PF00072 Response regulator receiver domain dqs_2849 PF02954 Bacterial regulatory protein, Fis family dqs_2850 PF00989 PAS fold dqs_2850 PF00512 His Kinase A (phospho-acceptor) domain dqs_2850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2851 PF01514 Secretory protein of YscJ/FliF family dqs_2851 PF08345 Flagellar M-ring protein C-terminal dqs_2852 PF14842 FliG N-terminal domain dqs_2852 PF14841 FliG middle domain dqs_2852 PF01706 FliG C-terminal domain dqs_2854 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain dqs_2854 PF18269 T3SS EscN ATPase C-terminal domain dqs_2858 PF02154 Flagellar motor switch protein FliM dqs_2858 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term dqs_2859 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term dqs_2859 PF16973 Flagellar motor switch protein FliN N-terminal dqs_2860 PF04347 Flagellar biosynthesis protein, FliO dqs_2861 PF00813 FliP family dqs_2862 PF01313 Bacterial export proteins, family 3 dqs_2863 PF01311 Bacterial export proteins, family 1 dqs_2865 PF00669 Bacterial flagellin N-terminal helical region dqs_2866 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_2866 PF00460 Flagella basal body rod protein dqs_2867 PF10135 Rod binding protein dqs_2867 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase dqs_2868 PF02119 Flagellar P-ring protein dqs_2869 PF02107 Flagellar L-ring protein dqs_2870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_2870 PF00460 Flagella basal body rod protein dqs_2871 PF00460 Flagella basal body rod protein dqs_2871 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_2872 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_2872 PF00460 Flagella basal body rod protein dqs_2872 PF07559 Flagellar basal body protein FlaE dqs_2874 PF00460 Flagella basal body rod protein dqs_2874 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_2875 PF00460 Flagella basal body rod protein dqs_2876 PF17656 FlgA N-terminal domain dqs_2876 PF13144 Chaperone for flagella basal body P-ring formation dqs_2880 PF00486 Transcriptional regulatory protein, C terminal dqs_2880 PF00072 Response regulator receiver domain dqs_2881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2881 PF00672 HAMP domain dqs_2881 PF00512 His Kinase A (phospho-acceptor) domain dqs_2883 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2883 PF05231 MASE1 dqs_2883 PF07730 Histidine kinase dqs_2884 PF00072 Response regulator receiver domain dqs_2884 PF00196 Bacterial regulatory proteins, luxR family dqs_2885 PF01266 FAD dependent oxidoreductase dqs_2885 PF16901 C-terminal domain of alpha-glycerophosphate oxidase dqs_2886 PF02782 FGGY family of carbohydrate kinases, C-terminal domain dqs_2886 PF00370 FGGY family of carbohydrate kinases, N-terminal domain dqs_2887 PF00892 EamA-like transporter family dqs_2889 PF00581 Rhodanese-like domain dqs_2890 PF01177 Asp/Glu/Hydantoin racemase dqs_2891 PF01479 S4 domain dqs_2891 PF00579 tRNA synthetases class I (W and Y) dqs_2892 PF01551 Peptidase family M23 dqs_2892 PF08525 Opacity-associated protein A N-terminal motif dqs_2892 PF01476 LysM domain dqs_2893 PF01521 Iron-sulphur cluster biosynthesis dqs_2894 PF00380 Ribosomal protein S9/S16 dqs_2895 PF00572 Ribosomal protein L13 dqs_2897 PF03232 Ubiquinone biosynthesis protein COQ7 dqs_2899 PF00293 NUDIX domain dqs_2900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) dqs_2900 PF04073 Aminoacyl-tRNA editing domain dqs_2900 PF03129 Anticodon binding domain dqs_2901 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain dqs_2901 PF01464 Transglycosylase SLT domain dqs_2903 PF00512 His Kinase A (phospho-acceptor) domain dqs_2903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2905 PF00072 Response regulator receiver domain dqs_2905 PF00158 Sigma-54 interaction domain dqs_2906 PF04055 Radical SAM superfamily dqs_2910 PF01063 Amino-transferase class IV dqs_2913 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II dqs_2913 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dqs_2913 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I dqs_2913 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain dqs_2915 PF02272 DHHA1 domain dqs_2915 PF01411 tRNA synthetases class II (A) dqs_2915 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain dqs_2916 PF01923 Cobalamin adenosyltransferase dqs_2917 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_2917 PF04055 Radical SAM superfamily dqs_2920 PF00664 ABC transporter transmembrane region dqs_2920 PF00005 ABC transporter dqs_2921 PF11799 impB/mucB/samB family C-terminal domain dqs_2921 PF00817 impB/mucB/samB family dqs_2922 PF02646 RmuC family dqs_2923 PF00793 DAHP synthetase I family dqs_2925 PF00174 Oxidoreductase molybdopterin binding domain dqs_2926 PF01794 Ferric reductase like transmembrane component dqs_2927 PF00994 Probable molybdopterin binding domain dqs_2928 PF04751 Protein of unknown function (DUF615) dqs_2929 PF01523 Putative modulator of DNA gyrase dqs_2930 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_2931 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_2933 PF00300 Histidine phosphatase superfamily (branch 1) dqs_2934 PF13493 Domain of unknown function (DUF4118) dqs_2934 PF13492 GAF domain dqs_2934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_2934 PF02702 Osmosensitive K+ channel His kinase sensor domain dqs_2934 PF00512 His Kinase A (phospho-acceptor) domain dqs_2935 PF00486 Transcriptional regulatory protein, C terminal dqs_2935 PF00072 Response regulator receiver domain dqs_2936 PF01012 Electron transfer flavoprotein domain dqs_2937 PF01012 Electron transfer flavoprotein domain dqs_2937 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_2938 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_2940 PF00464 Serine hydroxymethyltransferase dqs_2941 PF03477 ATP cone domain dqs_2942 PF01872 RibD C-terminal domain dqs_2942 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region dqs_2943 PF00899 ThiF family dqs_2945 PF03572 Peptidase family S41 dqs_2945 PF13180 PDZ domain dqs_2946 PF01551 Peptidase family M23 dqs_2947 PF00300 Histidine phosphatase superfamily (branch 1) dqs_2949 PF00581 Rhodanese-like domain dqs_2950 PF00462 Glutaredoxin dqs_2951 PF02556 Preprotein translocase subunit SecB dqs_2953 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus dqs_2953 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus dqs_2954 PF00588 SpoU rRNA Methylase family dqs_2955 PF00156 Phosphoribosyl transferase domain dqs_2956 PF04055 Radical SAM superfamily dqs_2956 PF06968 Biotin and Thiamin Synthesis associated domain dqs_2957 PF08241 Methyltransferase domain dqs_2960 PF00490 Delta-aminolevulinic acid dehydratase dqs_2961 PF01926 50S ribosome-binding GTPase dqs_2962 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_2963 PF04305 Protein of unknown function (DUF455) dqs_2964 PF03454 MoeA C-terminal region (domain IV) dqs_2964 PF03453 MoeA N-terminal region (domain I and II) dqs_2964 PF00994 Probable molybdopterin binding domain dqs_2965 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) dqs_2966 PF01895 PhoU domain dqs_2967 PF04362 Bacterial Fe(2+) trafficking dqs_2968 PF03707 Bacterial signalling protein N terminal repeat dqs_2968 PF00563 EAL domain dqs_2968 PF00990 Diguanylate cyclase, GGDEF domain dqs_2969 PF00696 Amino acid kinase family dqs_2969 PF00583 Acetyltransferase (GNAT) family dqs_2970 PF03976 Polyphosphate kinase 2 (PPK2) dqs_2971 PF04452 RNA methyltransferase dqs_2972 PF00459 Inositol monophosphatase family dqs_2974 PF00485 Phosphoribulokinase / Uridine kinase family dqs_2975 PF02780 Transketolase, C-terminal domain dqs_2975 PF02779 Transketolase, pyrimidine binding domain dqs_2975 PF00456 Transketolase, thiamine diphosphate binding domain dqs_2976 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain dqs_2976 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain dqs_2978 PF00162 Phosphoglycerate kinase dqs_2981 PF02887 Pyruvate kinase, alpha/beta domain dqs_2981 PF00224 Pyruvate kinase, barrel domain dqs_2982 PF01116 Fructose-bisphosphate aldolase class-II dqs_2983 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_2983 PF13360 PQQ-like domain dqs_2985 PF00158 Sigma-54 interaction domain dqs_2985 PF02954 Bacterial regulatory protein, Fis family dqs_2985 PF01590 GAF domain dqs_2988 PF00072 Response regulator receiver domain dqs_2988 PF00990 Diguanylate cyclase, GGDEF domain dqs_2989 PF00083 Sugar (and other) transporter dqs_2989 PF07690 Major Facilitator Superfamily dqs_2991 PF00171 Aldehyde dehydrogenase family dqs_2993 PF05114 Protein of unknown function (DUF692) dqs_2995 PF07681 DoxX dqs_2996 PF08281 Sigma-70, region 4 dqs_2996 PF04542 Sigma-70 region 2 dqs_2999 PF07584 Aerotolerance regulator N-terminal dqs_2999 PF13519 von Willebrand factor type A domain dqs_3000 PF01882 Protein of unknown function DUF58 dqs_3001 PF07726 ATPase family associated with various cellular activities (AAA) dqs_3001 PF17863 AAA lid domain dqs_3002 PF00595 PDZ domain dqs_3003 PF07584 Aerotolerance regulator N-terminal dqs_3003 PF00092 von Willebrand factor type A domain dqs_3005 PF00563 EAL domain dqs_3005 PF00990 Diguanylate cyclase, GGDEF domain dqs_3005 PF03707 Bacterial signalling protein N terminal repeat dqs_3006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3006 PF03466 LysR substrate binding domain dqs_3007 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase dqs_3008 PF01292 Prokaryotic cytochrome b561 dqs_3010 PF04264 YceI-like domain dqs_3012 PF01259 SAICAR synthetase dqs_3017 PF01432 Peptidase family M3 dqs_3018 PF03960 ArsC family dqs_3019 PF00909 Ammonium Transporter Family dqs_3019 PF00672 HAMP domain dqs_3022 PF00027 Cyclic nucleotide-binding domain dqs_3022 PF13545 Crp-like helix-turn-helix domain dqs_3024 PF00398 Ribosomal RNA adenine dimethylase dqs_3025 PF04166 Pyridoxal phosphate biosynthetic protein PdxA dqs_3026 PF09312 SurA N-terminal domain dqs_3026 PF00639 PPIC-type PPIASE domain dqs_3027 PF03968 OstA-like protein dqs_3027 PF04453 LPS transport system D dqs_3028 PF01636 Phosphotransferase enzyme family dqs_3029 PF00483 Nucleotidyl transferase dqs_3030 PF00557 Metallopeptidase family M24 dqs_3030 PF05195 Aminopeptidase P, N-terminal domain dqs_3031 PF01494 FAD binding domain dqs_3032 PF01207 Dihydrouridine synthase (Dus) dqs_3033 PF02954 Bacterial regulatory protein, Fis family dqs_3034 PF01808 AICARFT/IMPCHase bienzyme dqs_3034 PF02142 MGS-like domain dqs_3035 PF02844 Phosphoribosylglycinamide synthetase, N domain dqs_3035 PF02843 Phosphoribosylglycinamide synthetase, C domain dqs_3035 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain dqs_3036 PF01218 Coproporphyrinogen III oxidase dqs_3037 PF00916 Sulfate permease family dqs_3037 PF01740 STAS domain dqs_3038 PF00886 Ribosomal protein S16 dqs_3039 PF05239 PRC-barrel domain dqs_3039 PF01782 RimM N-terminal domain dqs_3040 PF01746 tRNA (Guanine-1)-methyltransferase dqs_3041 PF01245 Ribosomal protein L19 dqs_3043 PF03739 Lipopolysaccharide export system permease LptF/LptG dqs_3044 PF02789 Cytosol aminopeptidase family, N-terminal domain dqs_3044 PF00883 Cytosol aminopeptidase family, catalytic domain dqs_3047 PF08264 Anticodon-binding domain of tRNA dqs_3047 PF10458 Valyl tRNA synthetase tRNA binding arm dqs_3047 PF00133 tRNA synthetases class I (I, L, M and V) dqs_3050 PF00005 ABC transporter dqs_3051 PF13533 Biotin-lipoyl like dqs_3052 PF02321 Outer membrane efflux protein dqs_3057 PF05567 Neisseria PilC beta-propeller domain dqs_3058 PF00114 Pilin (bacterial filament) dqs_3058 PF07963 Prokaryotic N-terminal methylation motif dqs_3059 PF01206 Sulfurtransferase TusA dqs_3060 PF01435 Peptidase family M48 dqs_3061 PF01967 MoaC family dqs_3063 PF00005 ABC transporter dqs_3064 PF00528 Binding-protein-dependent transport system inner membrane component dqs_3069 PF18267 Rubredoxin NAD+ reductase C-terminal domain dqs_3069 PF04324 BFD-like [2Fe-2S] binding domain dqs_3069 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain dqs_3069 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_3070 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain dqs_3070 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 dqs_3072 PF01590 GAF domain dqs_3072 PF00158 Sigma-54 interaction domain dqs_3072 PF02954 Bacterial regulatory protein, Fis family dqs_3076 PF01292 Prokaryotic cytochrome b561 dqs_3077 PF00034 Cytochrome c dqs_3079 PF00171 Aldehyde dehydrogenase family dqs_3080 PF00158 Sigma-54 interaction domain dqs_3080 PF02954 Bacterial regulatory protein, Fis family dqs_3080 PF01590 GAF domain dqs_3085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3085 PF00672 HAMP domain dqs_3085 PF00512 His Kinase A (phospho-acceptor) domain dqs_3086 PF00072 Response regulator receiver domain dqs_3086 PF00486 Transcriptional regulatory protein, C terminal dqs_3089 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_3089 PF00529 HlyD membrane-fusion protein of T1SS dqs_3090 PF00873 AcrB/AcrD/AcrF family dqs_3091 PF04945 YHS domain dqs_3097 PF04542 Sigma-70 region 2 dqs_3097 PF08281 Sigma-70, region 4 dqs_3099 PF09828 Chromate resistance exported protein dqs_3100 PF17954 Quercetinase C-terminal cupin domain dqs_3100 PF02678 Pirin dqs_3101 PF07681 DoxX dqs_3102 PF03466 LysR substrate binding domain dqs_3102 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3103 PF03358 NADPH-dependent FMN reductase dqs_3105 PF00196 Bacterial regulatory proteins, luxR family dqs_3105 PF00072 Response regulator receiver domain dqs_3106 PF05231 MASE1 dqs_3106 PF07730 Histidine kinase dqs_3106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3107 PF01011 PQQ enzyme repeat dqs_3107 PF13360 PQQ-like domain dqs_3114 PF07730 Histidine kinase dqs_3114 PF05231 MASE1 dqs_3114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3115 PF00072 Response regulator receiver domain dqs_3115 PF00196 Bacterial regulatory proteins, luxR family dqs_3116 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_3116 PF00672 HAMP domain dqs_3124 PF03358 NADPH-dependent FMN reductase dqs_3125 PF00141 Peroxidase dqs_3126 PF00857 Isochorismatase family dqs_3127 PF05726 Pirin C-terminal cupin domain dqs_3127 PF02678 Pirin dqs_3128 PF03466 LysR substrate binding domain dqs_3128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3130 PF07715 TonB-dependent Receptor Plug Domain dqs_3130 PF00593 TonB dependent receptor dqs_3133 PF00593 TonB dependent receptor dqs_3133 PF07715 TonB-dependent Receptor Plug Domain dqs_3135 PF05951 Bacterial protein of unknown function (DUF882) dqs_3136 PF03734 L,D-transpeptidase catalytic domain dqs_3136 PF01471 Putative peptidoglycan binding domain dqs_3139 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3139 PF03466 LysR substrate binding domain dqs_3140 PF08669 Glycine cleavage T-protein C-terminal barrel domain dqs_3140 PF01571 Aminomethyltransferase folate-binding domain dqs_3140 PF16350 FAD dependent oxidoreductase central domain dqs_3140 PF01266 FAD dependent oxidoreductase dqs_3141 PF01012 Electron transfer flavoprotein domain dqs_3142 PF01012 Electron transfer flavoprotein domain dqs_3142 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_3143 PF05962 HutD dqs_3146 PF00120 Glutamine synthetase, catalytic domain dqs_3149 PF01645 Conserved region in glutamate synthase dqs_3150 PF00543 Nitrogen regulatory protein P-II dqs_3151 PF00909 Ammonium Transporter Family dqs_3153 PF13609 Gram-negative porin dqs_3156 PF00171 Aldehyde dehydrogenase family dqs_3157 PF13360 PQQ-like domain dqs_3157 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_3158 PF00593 TonB dependent receptor dqs_3158 PF07715 TonB-dependent Receptor Plug Domain dqs_3160 PF03992 Antibiotic biosynthesis monooxygenase dqs_3166 PF00072 Response regulator receiver domain dqs_3166 PF02954 Bacterial regulatory protein, Fis family dqs_3166 PF00158 Sigma-54 interaction domain dqs_3172 PF01568 Molydopterin dinucleotide binding domain dqs_3172 PF12838 4Fe-4S dicluster domain dqs_3172 PF00384 Molybdopterin oxidoreductase dqs_3172 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_3172 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region dqs_3173 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_3173 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_3173 PF10531 SLBB domain dqs_3174 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain dqs_3174 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_3174 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_3175 PF00301 Rubredoxin dqs_3176 PF00550 Phosphopantetheine attachment site dqs_3176 PF08659 KR domain dqs_3176 PF02801 Beta-ketoacyl synthase, C-terminal domain dqs_3176 PF00109 Beta-ketoacyl synthase, N-terminal domain dqs_3176 PF16197 Ketoacyl-synthetase C-terminal extension dqs_3176 PF00107 Zinc-binding dehydrogenase dqs_3176 PF08240 Alcohol dehydrogenase GroES-like domain dqs_3176 PF00698 Acyl transferase domain dqs_3176 PF14765 Polyketide synthase dehydratase dqs_3177 PF00378 Enoyl-CoA hydratase/isomerase dqs_3180 PF00005 ABC transporter dqs_3181 PF00005 ABC transporter dqs_3181 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_3183 PF02653 Branched-chain amino acid transport system / permease component dqs_3186 PF13193 AMP-binding enzyme C-terminal domain dqs_3186 PF00501 AMP-binding enzyme dqs_3189 PF01202 Shikimate kinase dqs_3193 PF02803 Thiolase, C-terminal domain dqs_3193 PF00108 Thiolase, N-terminal domain dqs_3195 PF00563 EAL domain dqs_3195 PF00990 Diguanylate cyclase, GGDEF domain dqs_3195 PF03707 Bacterial signalling protein N terminal repeat dqs_3198 PF01037 Lrp/AsnC ligand binding domain dqs_3199 PF00682 HMGL-like dqs_3200 PF00501 AMP-binding enzyme dqs_3200 PF13193 AMP-binding enzyme C-terminal domain dqs_3201 PF04480 Protein of unknown function (DUF559) dqs_3202 PF00289 Biotin carboxylase, N-terminal domain dqs_3202 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain dqs_3202 PF00364 Biotin-requiring enzyme dqs_3202 PF02785 Biotin carboxylase C-terminal domain dqs_3203 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_3203 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_3203 PF00378 Enoyl-CoA hydratase/isomerase dqs_3204 PF01039 Carboxyl transferase domain dqs_3216 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_3216 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_3216 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_3217 PF02311 AraC-like ligand binding domain dqs_3217 PF12833 Helix-turn-helix domain dqs_3218 PF04247 Invasion gene expression up-regulator, SirB dqs_3223 PF00034 Cytochrome c dqs_3224 PF00115 Cytochrome C and Quinol oxidase polypeptide I dqs_3226 PF08406 CbbQ/NirQ/NorQ C-terminal dqs_3226 PF07728 AAA domain (dynein-related subfamily) dqs_3228 PF00092 von Willebrand factor type A domain dqs_3230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain dqs_3230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain dqs_3231 PF13746 4Fe-4S dicluster domain dqs_3231 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase dqs_3231 PF12801 4Fe-4S binding domain dqs_3232 PF02082 Transcriptional regulator dqs_3233 PF03448 MgtE intracellular N domain dqs_3233 PF01769 Divalent cation transporter dqs_3233 PF00571 CBS domain dqs_3234 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_3237 PF05573 NosL dqs_3238 PF05573 NosL dqs_3239 PF12679 ABC-2 family transporter protein dqs_3240 PF00005 ABC transporter dqs_3241 PF05048 Periplasmic copper-binding protein (NosD) dqs_3243 PF12801 4Fe-4S binding domain dqs_3243 PF04205 FMN-binding domain dqs_3244 PF18764 Nitrous oxide reductase propeller repeat dqs_3244 PF18793 Nitrous oxide reductase propeller repeat 2 dqs_3244 PF13473 Cupredoxin-like domain dqs_3247 PF01842 ACT domain dqs_3247 PF00696 Amino acid kinase family dqs_3247 PF13840 ACT domain dqs_3250 PF01242 6-pyruvoyl tetrahydropterin synthase dqs_3252 PF12795 Mechanosensitive ion channel porin domain dqs_3252 PF00924 Mechanosensitive ion channel dqs_3252 PF12794 Mechanosensitive ion channel inner membrane domain 1 dqs_3253 PF13091 PLD-like domain dqs_3254 PF01029 NusB family dqs_3254 PF01189 16S rRNA methyltransferase RsmB/F dqs_3256 PF00551 Formyl transferase dqs_3258 PF01119 DNA mismatch repair protein, C-terminal domain dqs_3258 PF08676 MutL C terminal dimerisation domain dqs_3260 PF01402 Ribbon-helix-helix protein, copG family dqs_3260 PF08753 NikR C terminal nickel binding domain dqs_3262 PF01068 ATP dependent DNA ligase domain dqs_3262 PF14743 DNA ligase OB-like domain dqs_3266 PF00873 AcrB/AcrD/AcrF family dqs_3267 PF00529 HlyD membrane-fusion protein of T1SS dqs_3267 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_3268 PF02769 AIR synthase related protein, C-terminal domain dqs_3268 PF00586 AIR synthase related protein, N-terminal domain dqs_3269 PF01594 AI-2E family transporter dqs_3270 PF00308 Bacterial dnaA protein dqs_3272 PF12626 Polymerase A arginine-rich C-terminus dqs_3272 PF12627 Probable RNA and SrmB- binding site of polymerase A dqs_3272 PF01743 Poly A polymerase head domain dqs_3273 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) dqs_3275 PF01712 Deoxynucleoside kinase dqs_3276 PF02548 Ketopantoate hydroxymethyltransferase dqs_3277 PF02569 Pantoate-beta-alanine ligase dqs_3278 PF00571 CBS domain dqs_3278 PF00478 IMP dehydrogenase / GMP reductase domain dqs_3279 PF01433 Peptidase family M1 domain dqs_3279 PF17432 Domain of unknown function (DUF3458_C) ARM repeats dqs_3279 PF11940 Domain of unknown function (DUF3458) Ig-like fold dqs_3281 PF00690 Cation transporter/ATPase, N-terminus dqs_3281 PF00689 Cation transporting ATPase, C-terminus dqs_3286 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain dqs_3286 PF00205 Thiamine pyrophosphate enzyme, central domain dqs_3286 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain dqs_3287 PF10369 Small subunit of acetolactate synthase dqs_3288 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain dqs_3288 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain dqs_3289 PF01066 CDP-alcohol phosphatidyltransferase dqs_3290 PF00486 Transcriptional regulatory protein, C terminal dqs_3290 PF00072 Response regulator receiver domain dqs_3291 PF00072 Response regulator receiver domain dqs_3291 PF00672 HAMP domain dqs_3291 PF01627 Hpt domain dqs_3291 PF00512 His Kinase A (phospho-acceptor) domain dqs_3291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3294 PF08502 LeuA allosteric (dimerisation) domain dqs_3294 PF00682 HMGL-like dqs_3296 PF03358 NADPH-dependent FMN reductase dqs_3297 PF03631 Virulence factor BrkB dqs_3299 PF00829 Ribosomal prokaryotic L21 protein dqs_3300 PF01016 Ribosomal L27 protein dqs_3301 PF01018 GTP1/OBG dqs_3301 PF01926 50S ribosome-binding GTPase dqs_3302 PF01472 PUA domain dqs_3302 PF00696 Amino acid kinase family dqs_3304 PF00501 AMP-binding enzyme dqs_3305 PF00550 Phosphopantetheine attachment site dqs_3305 PF07993 Male sterility protein dqs_3306 PF02390 Putative methyltransferase dqs_3308 PF02687 FtsX-like permease family dqs_3308 PF12704 MacB-like periplasmic core domain dqs_3309 PF00005 ABC transporter dqs_3309 PF02687 FtsX-like permease family dqs_3309 PF12704 MacB-like periplasmic core domain dqs_3311 PF13193 AMP-binding enzyme C-terminal domain dqs_3311 PF00501 AMP-binding enzyme dqs_3311 PF16177 Acetyl-coenzyme A synthetase N-terminus dqs_3312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3312 PF01584 CheW-like domain dqs_3312 PF01627 Hpt domain dqs_3312 PF00072 Response regulator receiver domain dqs_3313 PF00107 Zinc-binding dehydrogenase dqs_3313 PF08240 Alcohol dehydrogenase GroES-like domain dqs_3315 PF04011 LemA family dqs_3321 PF01551 Peptidase family M23 dqs_3321 PF10145 Phage-related minor tail protein dqs_3321 PF01464 Transglycosylase SLT domain dqs_3322 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain dqs_3322 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dqs_3322 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain dqs_3324 PF02954 Bacterial regulatory protein, Fis family dqs_3324 PF00158 Sigma-54 interaction domain dqs_3324 PF00072 Response regulator receiver domain dqs_3325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3325 PF00512 His Kinase A (phospho-acceptor) domain dqs_3325 PF08448 PAS fold dqs_3325 PF00072 Response regulator receiver domain dqs_3325 PF13188 PAS domain dqs_3326 PF02397 Bacterial sugar transferase dqs_3327 PF01575 MaoC like domain dqs_3334 PF00303 Thymidylate synthase dqs_3335 PF00186 Dihydrofolate reductase dqs_3336 PF01276 Orn/Lys/Arg decarboxylase, major domain dqs_3336 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain dqs_3336 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain dqs_3337 PF00692 dUTPase dqs_3338 PF10609 NUBPL iron-transfer P-loop NTPase dqs_3339 PF05736 OprF membrane domain dqs_3339 PF00691 OmpA family dqs_3340 PF01588 Putative tRNA binding domain dqs_3340 PF09334 tRNA synthetases class I (M) dqs_3341 PF00916 Sulfate permease family dqs_3341 PF01740 STAS domain dqs_3342 PF00708 Acylphosphatase dqs_3343 PF00884 Sulfatase dqs_3345 PF07733 Bacterial DNA polymerase III alpha NTPase domain dqs_3345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain dqs_3345 PF14579 Helix-hairpin-helix motif dqs_3345 PF02811 PHP domain dqs_3345 PF01336 OB-fold nucleic acid binding domain dqs_3346 PF08240 Alcohol dehydrogenase GroES-like domain dqs_3346 PF00107 Zinc-binding dehydrogenase dqs_3348 PF03949 Malic enzyme, NAD binding domain dqs_3348 PF00390 Malic enzyme, N-terminal domain dqs_3348 PF01515 Phosphate acetyl/butaryl transferase dqs_3349 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family dqs_3350 PF13361 UvrD-like helicase C-terminal domain dqs_3350 PF00580 UvrD/REP helicase N-terminal domain dqs_3352 PF09334 tRNA synthetases class I (M) dqs_3352 PF00133 tRNA synthetases class I (I, L, M and V) dqs_3352 PF13603 Leucyl-tRNA synthetase, Domain 2 dqs_3352 PF08264 Anticodon-binding domain of tRNA dqs_3354 PF06144 DNA polymerase III, delta subunit dqs_3354 PF14840 Processivity clamp loader gamma complex DNA pol III C-term dqs_3355 PF00171 Aldehyde dehydrogenase family dqs_3356 PF02899 Phage integrase, N-terminal SAM-like domain dqs_3356 PF00589 Phage integrase family dqs_3357 PF04073 Aminoacyl-tRNA editing domain dqs_3360 PF02660 Glycerol-3-phosphate acyltransferase dqs_3361 PF00814 Glycoprotease family dqs_3362 PF01165 Ribosomal protein S21 dqs_3363 PF01807 CHC2 zinc finger dqs_3363 PF08275 DNA primase catalytic core, N-terminal domain dqs_3363 PF08278 DNA primase DnaG DnaB-binding dqs_3363 PF10410 DnaB-helicase binding domain of primase dqs_3364 PF04545 Sigma-70, region 4 dqs_3364 PF04539 Sigma-70 region 3 dqs_3364 PF00140 Sigma-70 factor, region 1.2 dqs_3364 PF04542 Sigma-70 region 2 dqs_3364 PF04546 Sigma-70, non-essential region dqs_3364 PF03979 Sigma-70 factor, region 1.1 dqs_3365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_3369 PF02978 Signal peptide binding domain dqs_3369 PF02881 SRP54-type protein, helical bundle domain dqs_3369 PF00448 SRP54-type protein, GTPase domain dqs_3371 PF00437 Type II/IV secretion system protein dqs_3371 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain dqs_3372 PF00482 Type II secretion system (T2SS), protein F dqs_3373 PF01478 Type IV leader peptidase family dqs_3373 PF06750 Bacterial Peptidase A24 N-terminal domain dqs_3376 PF02938 GAD domain dqs_3376 PF00152 tRNA synthetases class II (D, K and N) dqs_3376 PF01336 OB-fold nucleic acid binding domain dqs_3377 PF00158 Sigma-54 interaction domain dqs_3377 PF02954 Bacterial regulatory protein, Fis family dqs_3377 PF00072 Response regulator receiver domain dqs_3378 PF00545 ribonuclease dqs_3380 PF00011 Hsp20/alpha crystallin family dqs_3381 PF00696 Amino acid kinase family dqs_3383 PF13193 AMP-binding enzyme C-terminal domain dqs_3383 PF00501 AMP-binding enzyme dqs_3385 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain dqs_3385 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain dqs_3392 PF01757 Acyltransferase family dqs_3394 PF04230 Polysaccharide pyruvyl transferase dqs_3395 PF00535 Glycosyl transferase family 2 dqs_3397 PF00535 Glycosyl transferase family 2 dqs_3398 PF00535 Glycosyl transferase family 2 dqs_3399 PF00534 Glycosyl transferases group 1 dqs_3400 PF13439 Glycosyltransferase Family 4 dqs_3407 PF00534 Glycosyl transferases group 1 dqs_3407 PF13439 Glycosyltransferase Family 4 dqs_3408 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dqs_3408 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain dqs_3408 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain dqs_3410 PF13537 Glutamine amidotransferase domain dqs_3410 PF00733 Asparagine synthase dqs_3411 PF00534 Glycosyl transferases group 1 dqs_3411 PF08323 Starch synthase catalytic domain dqs_3412 PF00733 Asparagine synthase dqs_3412 PF13537 Glutamine amidotransferase domain dqs_3413 PF00534 Glycosyl transferases group 1 dqs_3416 PF01522 Polysaccharide deacetylase dqs_3417 PF02350 UDP-N-acetylglucosamine 2-epimerase dqs_3418 PF01471 Putative peptidoglycan binding domain dqs_3418 PF13401 AAA domain dqs_3420 PF13614 AAA domain dqs_3425 PF00005 ABC transporter dqs_3425 PF02687 FtsX-like permease family dqs_3425 PF12704 MacB-like periplasmic core domain dqs_3427 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain dqs_3427 PF10996 Beta-Casp domain dqs_3427 PF00753 Metallo-beta-lactamase superfamily dqs_3428 PF13609 Gram-negative porin dqs_3429 PF00267 Gram-negative porin dqs_3430 PF04542 Sigma-70 region 2 dqs_3430 PF00140 Sigma-70 factor, region 1.2 dqs_3430 PF04545 Sigma-70, region 4 dqs_3431 PF02630 SCO1/SenC dqs_3432 PF01040 UbiA prenyltransferase family dqs_3433 PF02628 Cytochrome oxidase assembly protein dqs_3437 PF00510 Cytochrome c oxidase subunit III dqs_3439 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 dqs_3441 PF00115 Cytochrome C and Quinol oxidase polypeptide I dqs_3442 PF00116 Cytochrome C oxidase subunit II, periplasmic domain dqs_3442 PF02790 Cytochrome C oxidase subunit II, transmembrane domain dqs_3443 PF01467 Cytidylyltransferase-like dqs_3444 PF02690 Na+/Pi-cotransporter dqs_3445 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain dqs_3445 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain dqs_3446 PF13411 MerR HTH family regulatory protein dqs_3446 PF02607 B12 binding domain dqs_3447 PF01593 Flavin containing amine oxidoreductase dqs_3453 PF00106 short chain dehydrogenase dqs_3455 PF00107 Zinc-binding dehydrogenase dqs_3455 PF08240 Alcohol dehydrogenase GroES-like domain dqs_3456 PF00570 HRDC domain dqs_3456 PF00271 Helicase conserved C-terminal domain dqs_3456 PF00270 DEAD/DEAH box helicase dqs_3456 PF09382 RQC domain dqs_3456 PF16124 RecQ zinc-binding dqs_3457 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase dqs_3458 PF01625 Peptide methionine sulfoxide reductase dqs_3460 PF00218 Indole-3-glycerol phosphate synthase dqs_3461 PF02885 Glycosyl transferase family, helical bundle domain dqs_3461 PF00591 Glycosyl transferase family, a/b domain dqs_3462 PF00117 Glutamine amidotransferase class-I dqs_3463 PF04715 Anthranilate synthase component I, N terminal region dqs_3463 PF00425 chorismate binding enzyme dqs_3464 PF13419 Haloacid dehalogenase-like hydrolase dqs_3466 PF00437 Type II/IV secretion system protein dqs_3466 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain dqs_3467 PF12706 Beta-lactamase superfamily domain dqs_3470 PF02629 CoA binding domain dqs_3470 PF00549 CoA-ligase dqs_3471 PF08442 ATP-grasp domain dqs_3471 PF00549 CoA-ligase dqs_3474 PF01784 NIF3 (NGG1p interacting factor 3) dqs_3475 PF13180 PDZ domain dqs_3475 PF17820 PDZ domain dqs_3476 PF00902 Sec-independent protein translocase protein (TatC) dqs_3477 PF02416 mttA/Hcf106 family dqs_3478 PF02416 mttA/Hcf106 family dqs_3479 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase dqs_3480 PF01502 Phosphoribosyl-AMP cyclohydrolase dqs_3481 PF00977 Histidine biosynthesis protein dqs_3482 PF00977 Histidine biosynthesis protein dqs_3483 PF00117 Glutamine amidotransferase class-I dqs_3484 PF00475 Imidazoleglycerol-phosphate dehydratase dqs_3485 PF00155 Aminotransferase class I and II dqs_3486 PF01464 Transglycosylase SLT domain dqs_3486 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain dqs_3487 PF01510 N-acetylmuramoyl-L-alanine amidase dqs_3488 PF00884 Sulfatase dqs_3488 PF16347 Domain of unknown function (DUF4976) dqs_3490 PF00005 ABC transporter dqs_3494 PF00114 Pilin (bacterial filament) dqs_3494 PF07963 Prokaryotic N-terminal methylation motif dqs_3495 PF00158 Sigma-54 interaction domain dqs_3495 PF02954 Bacterial regulatory protein, Fis family dqs_3495 PF00072 Response regulator receiver domain dqs_3496 PF00512 His Kinase A (phospho-acceptor) domain dqs_3496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3498 PF00155 Aminotransferase class I and II dqs_3499 PF01008 Initiation factor 2 subunit family dqs_3501 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase dqs_3501 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase dqs_3502 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase dqs_3502 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase dqs_3503 PF02885 Glycosyl transferase family, helical bundle domain dqs_3504 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain dqs_3504 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain dqs_3508 PF05726 Pirin C-terminal cupin domain dqs_3508 PF02678 Pirin dqs_3509 PF02525 Flavodoxin-like fold dqs_3510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3510 PF03466 LysR substrate binding domain dqs_3511 PF02600 Disulfide bond formation protein DsbB dqs_3514 PF00873 AcrB/AcrD/AcrF family dqs_3517 PF00899 ThiF family dqs_3519 PF00155 Aminotransferase class I and II dqs_3520 PF03707 Bacterial signalling protein N terminal repeat dqs_3520 PF00990 Diguanylate cyclase, GGDEF domain dqs_3520 PF00563 EAL domain dqs_3521 PF00072 Response regulator receiver domain dqs_3522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3522 PF00360 Phytochrome region dqs_3522 PF08446 PAS fold dqs_3522 PF00512 His Kinase A (phospho-acceptor) domain dqs_3522 PF01590 GAF domain dqs_3524 PF00436 Single-strand binding protein family dqs_3525 PF07690 Major Facilitator Superfamily dqs_3526 PF17755 UvrA DNA-binding domain dqs_3526 PF17760 UvrA interaction domain dqs_3528 PF16363 GDP-mannose 4,6 dehydratase dqs_3529 PF01196 Ribosomal protein L17 dqs_3530 PF01000 RNA polymerase Rpb3/RpoA insert domain dqs_3530 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain dqs_3530 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain dqs_3531 PF01479 S4 domain dqs_3531 PF00163 Ribosomal protein S4/S9 N-terminal domain dqs_3532 PF00411 Ribosomal protein S11 dqs_3533 PF00416 Ribosomal protein S13/S18 dqs_3534 PF00444 Ribosomal protein L36 dqs_3535 PF01176 Translation initiation factor 1A / IF-1 dqs_3536 PF00344 SecY translocase dqs_3537 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A dqs_3538 PF00327 Ribosomal protein L30p/L7e dqs_3539 PF03719 Ribosomal protein S5, C-terminal domain dqs_3539 PF00333 Ribosomal protein S5, N-terminal domain dqs_3540 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast dqs_3541 PF00347 Ribosomal protein L6 dqs_3542 PF00410 Ribosomal protein S8 dqs_3543 PF00253 Ribosomal protein S14p/S29e dqs_3544 PF00673 ribosomal L5P family C-terminus dqs_3544 PF00281 Ribosomal protein L5 dqs_3545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 dqs_3546 PF00238 Ribosomal protein L14p/L23e dqs_3547 PF00366 Ribosomal protein S17 dqs_3548 PF00831 Ribosomal L29 protein dqs_3549 PF00252 Ribosomal protein L16p/L10e dqs_3550 PF00189 Ribosomal protein S3, C-terminal domain dqs_3550 PF07650 KH domain dqs_3551 PF00237 Ribosomal protein L22p/L17e dqs_3552 PF00203 Ribosomal protein S19 dqs_3553 PF00181 Ribosomal Proteins L2, RNA binding domain dqs_3553 PF03947 Ribosomal Proteins L2, C-terminal domain dqs_3554 PF00276 Ribosomal protein L23 dqs_3555 PF00573 Ribosomal protein L4/L1 family dqs_3556 PF00297 Ribosomal protein L3 dqs_3557 PF00338 Ribosomal protein S10p/S20e dqs_3558 PF03143 Elongation factor Tu C-terminal domain dqs_3558 PF03144 Elongation factor Tu domain 2 dqs_3558 PF00009 Elongation factor Tu GTP binding domain dqs_3559 PF00009 Elongation factor Tu GTP binding domain dqs_3559 PF03764 Elongation factor G, domain IV dqs_3559 PF14492 Elongation Factor G, domain II dqs_3559 PF00679 Elongation factor G C-terminus dqs_3559 PF03144 Elongation factor Tu domain 2 dqs_3560 PF00177 Ribosomal protein S7p/S5e dqs_3561 PF00164 Ribosomal protein S12/S23 dqs_3562 PF04997 RNA polymerase Rpb1, domain 1 dqs_3562 PF00623 RNA polymerase Rpb1, domain 2 dqs_3562 PF04983 RNA polymerase Rpb1, domain 3 dqs_3562 PF05000 RNA polymerase Rpb1, domain 4 dqs_3562 PF04998 RNA polymerase Rpb1, domain 5 dqs_3563 PF04563 RNA polymerase beta subunit dqs_3563 PF04561 RNA polymerase Rpb2, domain 2 dqs_3563 PF04565 RNA polymerase Rpb2, domain 3 dqs_3563 PF10385 RNA polymerase beta subunit external 1 domain dqs_3563 PF00562 RNA polymerase Rpb2, domain 6 dqs_3563 PF04560 RNA polymerase Rpb2, domain 7 dqs_3564 PF16320 Ribosomal protein L7/L12 dimerisation domain dqs_3564 PF00542 Ribosomal protein L7/L12 C-terminal domain dqs_3565 PF00466 Ribosomal protein L10 dqs_3566 PF00687 Ribosomal protein L1p/L10e family dqs_3567 PF03946 Ribosomal protein L11, N-terminal domain dqs_3567 PF00298 Ribosomal protein L11, RNA binding domain dqs_3568 PF00467 KOW motif dqs_3568 PF02357 Transcription termination factor nusG dqs_3569 PF00584 SecE/Sec61-gamma subunits of protein translocation complex dqs_3571 PF00009 Elongation factor Tu GTP binding domain dqs_3571 PF03143 Elongation factor Tu C-terminal domain dqs_3571 PF03144 Elongation factor Tu domain 2 dqs_3575 PF02913 FAD linked oxidases, C-terminal domain dqs_3575 PF01565 FAD binding domain dqs_3579 PF00072 Response regulator receiver domain dqs_3579 PF00196 Bacterial regulatory proteins, luxR family dqs_3581 PF01627 Hpt domain dqs_3581 PF00072 Response regulator receiver domain dqs_3581 PF00672 HAMP domain dqs_3581 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3581 PF00512 His Kinase A (phospho-acceptor) domain dqs_3583 PF02515 CoA-transferase family III dqs_3585 PF00005 ABC transporter dqs_3588 PF02653 Branched-chain amino acid transport system / permease component dqs_3589 PF00005 ABC transporter dqs_3589 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_3590 PF00501 AMP-binding enzyme dqs_3592 PF00202 Aminotransferase class-III dqs_3593 PF02581 Thiamine monophosphate synthase dqs_3595 PF00301 Rubredoxin dqs_3596 PF00072 Response regulator receiver domain dqs_3597 PF00072 Response regulator receiver domain dqs_3599 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term dqs_3599 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_3600 PF00072 Response regulator receiver domain dqs_3600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3600 PF00072 Response regulator receiver domain dqs_3600 PF01627 Hpt domain dqs_3600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3600 PF01584 CheW-like domain dqs_3600 PF01584 CheW-like domain dqs_3600 PF01627 Hpt domain dqs_3601 PF03441 FAD binding domain of DNA photolyase dqs_3601 PF00875 DNA photolyase dqs_3602 PF02622 Uncharacterized ACR, COG1678 dqs_3603 PF03652 Holliday junction resolvase dqs_3604 PF00156 Phosphoribosyl transferase domain dqs_3605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain dqs_3605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain dqs_3606 PF01979 Amidohydrolase family dqs_3607 PF02594 Uncharacterised ACR, YggU family COG1872 dqs_3608 PF02325 YGGT family dqs_3609 PF14748 Pyrroline-5-carboxylate reductase dimerisation dqs_3609 PF03807 NADP oxidoreductase coenzyme F420-dependent dqs_3610 PF01168 Alanine racemase, N-terminal domain dqs_3611 PF00437 Type II/IV secretion system protein dqs_3612 PF00437 Type II/IV secretion system protein dqs_3613 PF04717 Type VI secretion system, phage-baseplate injector dqs_3613 PF16671 Actin cross-linking domain dqs_3618 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_3618 PF00672 HAMP domain dqs_3618 PF17202 Single cache domain 3 dqs_3619 PF08447 PAS fold dqs_3619 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_3620 PF02926 THUMP domain dqs_3620 PF01170 Putative RNA methylase family UPF0020 dqs_3624 PF13247 4Fe-4S dicluster domain dqs_3625 PF01568 Molydopterin dinucleotide binding domain dqs_3625 PF00384 Molybdopterin oxidoreductase dqs_3625 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_3631 PF02634 FdhD/NarQ family dqs_3632 PF12804 MobA-like NTP transferase domain dqs_3634 PF03205 Molybdopterin guanine dinucleotide synthesis protein B dqs_3635 PF00512 His Kinase A (phospho-acceptor) domain dqs_3635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3635 PF00989 PAS fold dqs_3636 PF02954 Bacterial regulatory protein, Fis family dqs_3636 PF00072 Response regulator receiver domain dqs_3636 PF00158 Sigma-54 interaction domain dqs_3639 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_3639 PF00175 Oxidoreductase NAD-binding domain dqs_3639 PF00970 Oxidoreductase FAD-binding domain dqs_3640 PF00563 EAL domain dqs_3640 PF08668 HDOD domain dqs_3641 PF13426 PAS domain dqs_3641 PF13188 PAS domain dqs_3641 PF00512 His Kinase A (phospho-acceptor) domain dqs_3641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3641 PF00989 PAS fold dqs_3642 PF03707 Bacterial signalling protein N terminal repeat dqs_3642 PF00990 Diguanylate cyclase, GGDEF domain dqs_3642 PF00563 EAL domain dqs_3643 PF00034 Cytochrome c dqs_3644 PF02492 CobW/HypB/UreG, nucleotide-binding domain dqs_3645 PF01730 UreF dqs_3646 PF05194 UreE urease accessory protein, C-terminal domain dqs_3646 PF02814 UreE urease accessory protein, N-terminal domain dqs_3647 PF00449 Urease alpha-subunit, N-terminal domain dqs_3647 PF01979 Amidohydrolase family dqs_3648 PF00699 Urease beta subunit dqs_3650 PF00547 Urease, gamma subunit dqs_3651 PF01774 UreD urease accessory protein dqs_3652 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term dqs_3652 PF14489 QueF-like protein dqs_3653 PF00884 Sulfatase dqs_3655 PF09084 NMT1/THI5 like dqs_3656 PF00005 ABC transporter dqs_3657 PF00528 Binding-protein-dependent transport system inner membrane component dqs_3658 PF01638 HxlR-like helix-turn-helix dqs_3659 PF03358 NADPH-dependent FMN reductase dqs_3660 PF07685 CobB/CobQ-like glutamine amidotransferase domain dqs_3660 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_3661 PF17113 Regulatory signalling modulator protein AmpE dqs_3661 PF03186 CobD/Cbib protein dqs_3662 PF00155 Aminotransferase class I and II dqs_3663 PF01497 Periplasmic binding protein dqs_3665 PF00271 Helicase conserved C-terminal domain dqs_3665 PF00270 DEAD/DEAH box helicase dqs_3666 PF08502 LeuA allosteric (dimerisation) domain dqs_3666 PF00682 HMGL-like dqs_3667 PF00881 Nitroreductase family dqs_3670 PF00563 EAL domain dqs_3670 PF00990 Diguanylate cyclase, GGDEF domain dqs_3670 PF08448 PAS fold dqs_3672 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_3673 PF01903 CbiX dqs_3674 PF02570 Precorrin-8X methylmutase dqs_3675 PF01888 CbiD dqs_3676 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_3677 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_3678 PF11760 Cobalamin synthesis G N-terminal dqs_3678 PF01890 Cobalamin synthesis G C-terminus dqs_3678 PF11761 Cobalamin biosynthesis central region dqs_3680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_3680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain dqs_3683 PF00155 Aminotransferase class I and II dqs_3683 PF00392 Bacterial regulatory proteins, gntR family dqs_3684 PF05958 tRNA (Uracil-5-)-methyltransferase dqs_3684 PF01938 TRAM domain dqs_3685 PF02798 Glutathione S-transferase, N-terminal domain dqs_3687 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain dqs_3687 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain dqs_3688 PF01810 LysE type translocator dqs_3689 PF02074 Carboxypeptidase Taq (M32) metallopeptidase dqs_3692 PF02666 Phosphatidylserine decarboxylase dqs_3693 PF07685 CobB/CobQ-like glutamine amidotransferase domain dqs_3693 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_3694 PF10414 Sirohaem synthase dimerisation region dqs_3694 PF14824 Sirohaem biosynthesis protein central dqs_3694 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_3695 PF12557 Cob(I)alamin adenosyltransferase N terminal dqs_3695 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP dqs_3696 PF00005 ABC transporter dqs_3697 PF01032 FecCD transport family dqs_3698 PF07715 TonB-dependent Receptor Plug Domain dqs_3698 PF00593 TonB dependent receptor dqs_3700 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase dqs_3701 PF01435 Peptidase family M48 dqs_3702 PF05987 Bacterial protein of unknown function (DUF898) dqs_3703 PF02277 Phosphoribosyltransferase dqs_3704 PF02654 Cobalamin-5-phosphate synthase dqs_3706 PF01467 Cytidylyltransferase-like dqs_3706 PF00294 pfkB family carbohydrate kinase dqs_3707 PF01370 NAD dependent epimerase/dehydratase family dqs_3708 PF01075 Glycosyltransferase family 9 (heptosyltransferase) dqs_3709 PF01075 Glycosyltransferase family 9 (heptosyltransferase) dqs_3710 PF13439 Glycosyltransferase Family 4 dqs_3710 PF00534 Glycosyl transferases group 1 dqs_3715 PF00664 ABC transporter transmembrane region dqs_3715 PF00005 ABC transporter dqs_3717 PF04932 O-Antigen ligase dqs_3721 PF00534 Glycosyl transferases group 1 dqs_3721 PF13439 Glycosyltransferase Family 4 dqs_3722 PF02543 Carbamoyltransferase N-terminus dqs_3722 PF16861 Carbamoyltransferase C-terminus dqs_3723 PF01757 Acyltransferase family dqs_3724 PF02719 Polysaccharide biosynthesis protein dqs_3725 PF00953 Glycosyl transferase family 4 dqs_3726 PF01370 NAD dependent epimerase/dehydratase family dqs_3727 PF13439 Glycosyltransferase Family 4 dqs_3727 PF00534 Glycosyl transferases group 1 dqs_3728 PF00535 Glycosyl transferase family 2 dqs_3729 PF01370 NAD dependent epimerase/dehydratase family dqs_3730 PF16363 GDP-mannose 4,6 dehydratase dqs_3737 PF00535 Glycosyl transferase family 2 dqs_3739 PF00005 ABC transporter dqs_3740 PF01061 ABC-2 type transporter dqs_3742 PF01370 NAD dependent epimerase/dehydratase family dqs_3743 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain dqs_3743 PF00476 DNA polymerase family A dqs_3743 PF01612 3'-5' exonuclease dqs_3743 PF01367 5'-3' exonuclease, C-terminal SAM fold dqs_3744 PF03641 Possible lysine decarboxylase dqs_3747 PF01636 Phosphotransferase enzyme family dqs_3750 PF01467 Cytidylyltransferase-like dqs_3752 PF02590 Predicted SPOUT methyltransferase dqs_3753 PF01327 Polypeptide deformylase dqs_3754 PF02545 Maf-like protein dqs_3755 PF00575 S1 RNA binding domain dqs_3755 PF10150 Ribonuclease E/G family dqs_3758 PF00486 Transcriptional regulatory protein, C terminal dqs_3758 PF00072 Response regulator receiver domain dqs_3759 PF00672 HAMP domain dqs_3759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3759 PF00512 His Kinase A (phospho-acceptor) domain dqs_3761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3761 PF03466 LysR substrate binding domain dqs_3763 PF00211 Adenylate and Guanylate cyclase catalytic domain dqs_3763 PF00672 HAMP domain dqs_3764 PF03352 Methyladenine glycosylase dqs_3765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3765 PF03466 LysR substrate binding domain dqs_3766 PF00107 Zinc-binding dehydrogenase dqs_3766 PF08240 Alcohol dehydrogenase GroES-like domain dqs_3767 PF00756 Putative esterase dqs_3769 PF00012 Hsp70 protein dqs_3770 PF01464 Transglycosylase SLT domain dqs_3774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3774 PF03466 LysR substrate binding domain dqs_3775 PF07690 Major Facilitator Superfamily dqs_3776 PF00248 Aldo/keto reductase family dqs_3777 PF00005 ABC transporter dqs_3777 PF00664 ABC transporter transmembrane region dqs_3779 PF10605 3HB-oligomer hydrolase (3HBOH) dqs_3781 PF01380 SIS domain dqs_3782 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_3782 PF12804 MobA-like NTP transferase domain dqs_3783 PF01515 Phosphate acetyl/butaryl transferase dqs_3784 PF00871 Acetokinase family dqs_3786 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster dqs_3786 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_3787 PF04898 Glutamate synthase central domain dqs_3787 PF01645 Conserved region in glutamate synthase dqs_3787 PF01493 GXGXG motif dqs_3787 PF00310 Glutamine amidotransferases class-II dqs_3788 PF01966 HD domain dqs_3788 PF13286 Phosphohydrolase-associated domain dqs_3789 PF01761 3-dehydroquinate synthase dqs_3790 PF01202 Shikimate kinase dqs_3791 PF11741 AMIN domain dqs_3791 PF00263 Bacterial type II and III secretion system protein dqs_3791 PF03958 Bacterial type II/III secretion system short domain dqs_3791 PF07660 Secretin and TonB N terminus short domain dqs_3796 PF00912 Transglycosylase dqs_3796 PF00905 Penicillin binding protein transpeptidase domain dqs_3796 PF17092 Penicillin-binding protein OB-like domain dqs_3797 PF01491 Frataxin-like domain dqs_3799 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain dqs_3799 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain dqs_3801 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family dqs_3803 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase dqs_3804 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family dqs_3805 PF02146 Sir2 family dqs_3806 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_3806 PF01568 Molydopterin dinucleotide binding domain dqs_3806 PF00384 Molybdopterin oxidoreductase dqs_3808 PF00156 Phosphoribosyl transferase domain dqs_3809 PF03372 Endonuclease/Exonuclease/phosphatase family dqs_3810 PF03707 Bacterial signalling protein N terminal repeat dqs_3810 PF00990 Diguanylate cyclase, GGDEF domain dqs_3810 PF00563 EAL domain dqs_3811 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3811 PF08448 PAS fold dqs_3811 PF13188 PAS domain dqs_3811 PF00072 Response regulator receiver domain dqs_3811 PF00512 His Kinase A (phospho-acceptor) domain dqs_3812 PF05957 Bacterial protein of unknown function (DUF883) dqs_3817 PF00486 Transcriptional regulatory protein, C terminal dqs_3817 PF00072 Response regulator receiver domain dqs_3818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3818 PF00512 His Kinase A (phospho-acceptor) domain dqs_3818 PF08521 Two-component sensor kinase N-terminal dqs_3819 PF13180 PDZ domain dqs_3819 PF17820 PDZ domain dqs_3821 PF02798 Glutathione S-transferase, N-terminal domain dqs_3821 PF14497 Glutathione S-transferase, C-terminal domain dqs_3822 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_3826 PF01494 FAD binding domain dqs_3830 PF01627 Hpt domain dqs_3830 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_3830 PF00512 His Kinase A (phospho-acceptor) domain dqs_3830 PF00072 Response regulator receiver domain dqs_3830 PF00672 HAMP domain dqs_3830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3831 PF00072 Response regulator receiver domain dqs_3834 PF01565 FAD binding domain dqs_3834 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain dqs_3836 PF12729 Four helix bundle sensory module for signal transduction dqs_3836 PF00672 HAMP domain dqs_3836 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_3840 PF00579 tRNA synthetases class I (W and Y) dqs_3844 PF07075 Protein of unknown function (DUF1343) dqs_3845 PF00085 Thioredoxin dqs_3847 PF08241 Methyltransferase domain dqs_3850 PF02311 AraC-like ligand binding domain dqs_3850 PF12833 Helix-turn-helix domain dqs_3854 PF00583 Acetyltransferase (GNAT) family dqs_3857 PF13847 Methyltransferase domain dqs_3858 PF00293 NUDIX domain dqs_3858 PF09297 NADH pyrophosphatase zinc ribbon domain dqs_3875 PF00589 Phage integrase family dqs_3875 PF13495 Phage integrase, N-terminal SAM-like domain dqs_3876 PF13495 Phage integrase, N-terminal SAM-like domain dqs_3876 PF00589 Phage integrase family dqs_3877 PF02574 Homocysteine S-methyltransferase dqs_3877 PF00809 Pterin binding enzyme dqs_3877 PF02965 Vitamin B12 dependent methionine synthase, activation domain dqs_3877 PF02607 B12 binding domain dqs_3877 PF02310 B12 binding domain dqs_3880 PF13458 Periplasmic binding protein dqs_3881 PF13458 Periplasmic binding protein dqs_3882 PF02653 Branched-chain amino acid transport system / permease component dqs_3883 PF11862 Domain of unknown function (DUF3382) dqs_3883 PF02653 Branched-chain amino acid transport system / permease component dqs_3884 PF00005 ABC transporter dqs_3884 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_3885 PF00005 ABC transporter dqs_3886 PF07690 Major Facilitator Superfamily dqs_3887 PF13335 Magnesium chelatase, subunit ChlI C-terminal dqs_3887 PF01078 Magnesium chelatase, subunit ChlI dqs_3888 PF04380 Membrane fusogenic activity dqs_3890 PF00543 Nitrogen regulatory protein P-II dqs_3891 PF00909 Ammonium Transporter Family dqs_3892 PF03922 OmpW family dqs_3893 PF01842 ACT domain dqs_3893 PF00551 Formyl transferase dqs_3895 PF11871 Domain of unknown function (DUF3391) dqs_3895 PF01966 HD domain dqs_3896 PF00005 ABC transporter dqs_3896 PF12848 ABC transporter dqs_3898 PF01323 DSBA-like thioredoxin domain dqs_3900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3900 PF03466 LysR substrate binding domain dqs_3901 PF00857 Isochorismatase family dqs_3902 PF01965 DJ-1/PfpI family dqs_3902 PF12833 Helix-turn-helix domain dqs_3904 PF18327 Proline utilization A proline dehydrogenase N-terminal domain dqs_3904 PF01619 Proline dehydrogenase dqs_3904 PF14850 DNA-binding domain of Proline dehydrogenase dqs_3904 PF00171 Aldehyde dehydrogenase family dqs_3905 PF02424 ApbE family dqs_3906 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain dqs_3906 PF02951 Prokaryotic glutathione synthetase, N-terminal domain dqs_3908 PF07669 Eco57I restriction-modification methylase dqs_3908 PF12950 TaqI-like C-terminal specificity domain dqs_3909 PF01814 Hemerythrin HHE cation binding domain dqs_3910 PF01814 Hemerythrin HHE cation binding domain dqs_3919 PF18011 C-terminal domain found in long catalases dqs_3919 PF06628 Catalase-related immune-responsive dqs_3919 PF00199 Catalase dqs_3920 PF07969 Amidohydrolase family dqs_3921 PF04972 BON domain dqs_3921 PF01476 LysM domain dqs_3925 PF00069 Protein kinase domain dqs_3925 PF03793 PASTA domain dqs_3928 PF00990 Diguanylate cyclase, GGDEF domain dqs_3930 PF12848 ABC transporter dqs_3930 PF00005 ABC transporter dqs_3931 PF03610 PTS system fructose IIA component dqs_3931 PF03830 PTS system sorbose subfamily IIB component dqs_3932 PF00381 PTS HPr component phosphorylation site dqs_3933 PF05524 PEP-utilising enzyme, N-terminal dqs_3933 PF00391 PEP-utilising enzyme, mobile domain dqs_3933 PF02896 PEP-utilising enzyme, TIM barrel domain dqs_3938 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal dqs_3938 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit dqs_3939 PF00374 Nickel-dependent hydrogenase dqs_3940 PF01292 Prokaryotic cytochrome b561 dqs_3942 PF00255 Glutathione peroxidase dqs_3944 PF01750 Hydrogenase maturation protease dqs_3945 PF01455 HupF/HypC family dqs_3947 PF04809 HupH hydrogenase expression protein, C-terminal conserved region dqs_3948 PF00301 Rubredoxin dqs_3949 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE dqs_3950 PF00374 Nickel-dependent hydrogenase dqs_3951 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA dqs_3952 PF02492 CobW/HypB/UreG, nucleotide-binding domain dqs_3953 PF01300 Telomere recombination dqs_3953 PF17788 HypF Kae1-like domain dqs_3953 PF07503 HypF finger dqs_3953 PF00708 Acylphosphatase dqs_3954 PF01455 HupF/HypC family dqs_3955 PF01924 Hydrogenase formation hypA family dqs_3956 PF02769 AIR synthase related protein, C-terminal domain dqs_3956 PF00586 AIR synthase related protein, N-terminal domain dqs_3957 PF00158 Sigma-54 interaction domain dqs_3957 PF00072 Response regulator receiver domain dqs_3957 PF02954 Bacterial regulatory protein, Fis family dqs_3960 PF00374 Nickel-dependent hydrogenase dqs_3961 PF05231 MASE1 dqs_3961 PF13426 PAS domain dqs_3961 PF08448 PAS fold dqs_3961 PF08447 PAS fold dqs_3961 PF00563 EAL domain dqs_3961 PF00990 Diguanylate cyclase, GGDEF domain dqs_3962 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_3962 PF02743 Cache domain dqs_3962 PF00512 His Kinase A (phospho-acceptor) domain dqs_3963 PF01613 Flavin reductase like domain dqs_3964 PF00633 Helix-hairpin-helix motif dqs_3964 PF14815 NUDIX domain dqs_3964 PF10576 Iron-sulfur binding domain of endonuclease III dqs_3964 PF00730 HhH-GPD superfamily base excision DNA repair protein dqs_3966 PF02441 Flavoprotein dqs_3971 PF02653 Branched-chain amino acid transport system / permease component dqs_3971 PF11862 Domain of unknown function (DUF3382) dqs_3972 PF02653 Branched-chain amino acid transport system / permease component dqs_3974 PF01741 Large-conductance mechanosensitive channel, MscL dqs_3975 PF00753 Metallo-beta-lactamase superfamily dqs_3976 PF00459 Inositol monophosphatase family dqs_3978 PF00005 ABC transporter dqs_3979 PF00528 Binding-protein-dependent transport system inner membrane component dqs_3980 PF00455 DeoR C terminal sensor domain dqs_3980 PF08220 DeoR-like helix-turn-helix domain dqs_3981 PF06751 Ethanolamine ammonia lyase large subunit (EutB) dqs_3982 PF05985 Ethanolamine ammonia-lyase light chain (EutC) dqs_3984 PF12849 PBP superfamily domain dqs_3985 PF03459 TOBE domain dqs_3985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3986 PF00005 ABC transporter dqs_3986 PF03459 TOBE domain dqs_3987 PF00528 Binding-protein-dependent transport system inner membrane component dqs_3989 PF03459 TOBE domain dqs_3989 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3990 PF03459 TOBE domain dqs_3990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_3992 PF05170 AsmA family dqs_3993 PF00990 Diguanylate cyclase, GGDEF domain dqs_3993 PF00563 EAL domain dqs_3993 PF03707 Bacterial signalling protein N terminal repeat dqs_3994 PF13538 UvrD-like helicase C-terminal domain dqs_3995 PF12705 PD-(D/E)XK nuclease superfamily dqs_3995 PF00580 UvrD/REP helicase N-terminal domain dqs_3995 PF13361 UvrD-like helicase C-terminal domain dqs_3996 PF07715 TonB-dependent Receptor Plug Domain dqs_3996 PF00593 TonB dependent receptor dqs_3997 PF05175 Methyltransferase small domain dqs_3998 PF02834 LigT like Phosphoesterase dqs_3999 PF00245 Alkaline phosphatase dqs_4001 PF00378 Enoyl-CoA hydratase/isomerase dqs_4001 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_4001 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_4002 PF17946 RecC C-terminal domain dqs_4003 PF03466 LysR substrate binding domain dqs_4003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_4004 PF00180 Isocitrate/isopropylmalate dehydrogenase dqs_4005 PF12843 Putative quorum-sensing-regulated virulence factor dqs_4006 PF01914 MarC family integral membrane protein dqs_4009 PF13360 PQQ-like domain dqs_4009 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_4011 PF00676 Dehydrogenase E1 component dqs_4012 PF02779 Transketolase, pyrimidine binding domain dqs_4012 PF02780 Transketolase, C-terminal domain dqs_4014 PF02817 e3 binding domain dqs_4014 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) dqs_4014 PF00364 Biotin-requiring enzyme dqs_4015 PF03099 Biotin/lipoate A/B protein ligase family dqs_4017 PF05199 GMC oxidoreductase dqs_4017 PF00732 GMC oxidoreductase dqs_4019 PF00158 Sigma-54 interaction domain dqs_4019 PF01590 GAF domain dqs_4019 PF02954 Bacterial regulatory protein, Fis family dqs_4020 PF04717 Type VI secretion system, phage-baseplate injector dqs_4032 PF00211 Adenylate and Guanylate cyclase catalytic domain dqs_4032 PF00069 Protein kinase domain dqs_4035 PF13677 Membrane MotB of proton-channel complex MotA/MotB dqs_4035 PF00691 OmpA family dqs_4041 PF05638 Type VI secretion system effector, Hcp dqs_4047 PF00004 ATPase family associated with various cellular activities (AAA) dqs_4047 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_4047 PF17871 AAA lid domain dqs_4047 PF07724 AAA domain (Cdc48 subfamily) dqs_4052 PF00069 Protein kinase domain dqs_4052 PF03793 PASTA domain dqs_4055 PF00109 Beta-ketoacyl synthase, N-terminal domain dqs_4055 PF02801 Beta-ketoacyl synthase, C-terminal domain dqs_4059 PF00999 Sodium/hydrogen exchanger family dqs_4060 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_4065 PF04820 Tryptophan halogenase dqs_4067 PF01037 Lrp/AsnC ligand binding domain dqs_4068 PF01266 FAD dependent oxidoreductase dqs_4069 PF01168 Alanine racemase, N-terminal domain dqs_4069 PF00842 Alanine racemase, C-terminal domain dqs_4072 PF03918 Cytochrome C biogenesis protein dqs_4073 PF08534 Redoxin dqs_4074 PF01578 Cytochrome C assembly protein dqs_4074 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal dqs_4075 PF03100 CcmE dqs_4077 PF01578 Cytochrome C assembly protein dqs_4078 PF03379 CcmB protein dqs_4079 PF00005 ABC transporter dqs_4080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_4080 PF02743 Cache domain dqs_4080 PF00672 HAMP domain dqs_4081 PF03264 NapC/NirT cytochrome c family, N-terminal region dqs_4082 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) dqs_4083 PF13237 4Fe-4S dicluster domain dqs_4083 PF12801 4Fe-4S binding domain dqs_4084 PF12800 4Fe-4S binding domain dqs_4084 PF12838 4Fe-4S dicluster domain dqs_4085 PF00384 Molybdopterin oxidoreductase dqs_4085 PF01568 Molydopterin dinucleotide binding domain dqs_4085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_4087 PF12800 4Fe-4S binding domain dqs_4087 PF00037 4Fe-4S binding domain dqs_4087 PF13187 4Fe-4S dicluster domain dqs_4088 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_4088 PF00072 Response regulator receiver domain dqs_4088 PF01627 Hpt domain dqs_4088 PF00672 HAMP domain dqs_4088 PF00512 His Kinase A (phospho-acceptor) domain dqs_4088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_4089 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_4089 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_4089 PF00512 His Kinase A (phospho-acceptor) domain dqs_4089 PF01627 Hpt domain dqs_4089 PF00989 PAS fold dqs_4089 PF00072 Response regulator receiver domain dqs_4090 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_4090 PF00072 Response regulator receiver domain dqs_4090 PF01627 Hpt domain dqs_4090 PF00512 His Kinase A (phospho-acceptor) domain dqs_4090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_4090 PF00672 HAMP domain dqs_4091 PF00929 Exonuclease dqs_4092 PF01209 ubiE/COQ5 methyltransferase family dqs_4094 PF04607 Region found in RelA / SpoT proteins dqs_4094 PF02824 TGS domain dqs_4094 PF13291 ACT domain dqs_4095 PF01192 RNA polymerase Rpb6 dqs_4096 PF00625 Guanylate kinase dqs_4100 PF17657 Bacterial DNA polymerase III alpha subunit finger domain dqs_4100 PF07733 Bacterial DNA polymerase III alpha NTPase domain dqs_4100 PF01336 OB-fold nucleic acid binding domain dqs_4100 PF02811 PHP domain dqs_4100 PF14579 Helix-hairpin-helix motif dqs_4102 PF13411 MerR HTH family regulatory protein dqs_4103 PF08340 Domain of unknown function (DUF1732) dqs_4103 PF03755 YicC-like family, N-terminal region dqs_4104 PF00069 Protein kinase domain dqs_4106 PF03725 3' exoribonuclease family, domain 2 dqs_4106 PF01138 3' exoribonuclease family, domain 1 dqs_4107 PF01725 Ham1 family dqs_4108 PF04055 Radical SAM superfamily dqs_4108 PF06969 HemN C-terminal domain dqs_4110 PF01343 Peptidase family S49 dqs_4111 PF02390 Putative methyltransferase dqs_4112 PF05690 Thiazole biosynthesis protein ThiG dqs_4113 PF05690 Thiazole biosynthesis protein ThiG dqs_4113 PF02597 ThiS family dqs_4114 PF00561 alpha/beta hydrolase fold dqs_4115 PF00561 alpha/beta hydrolase fold dqs_4115 PF07021 Methionine biosynthesis protein MetW dqs_4118 PF07690 Major Facilitator Superfamily dqs_4120 PF00484 Carbonic anhydrase dqs_4121 PF00271 Helicase conserved C-terminal domain dqs_4121 PF17764 3′ DNA-binding domain (3′BD) dqs_4121 PF18319 PriA DNA helicase Cys-rich region (CRR) domain dqs_4121 PF00270 DEAD/DEAH box helicase dqs_4121 PF18074 Primosomal protein N C-terminal domain dqs_4122 PF01208 Uroporphyrinogen decarboxylase (URO-D) dqs_4123 PF02386 Cation transport protein dqs_4124 PF02080 TrkA-C domain dqs_4124 PF02254 TrkA-N domain dqs_4125 PF00072 Response regulator receiver domain dqs_4125 PF00158 Sigma-54 interaction domain dqs_4125 PF02954 Bacterial regulatory protein, Fis family dqs_4126 PF00672 HAMP domain dqs_4126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_4126 PF00989 PAS fold dqs_4126 PF00512 His Kinase A (phospho-acceptor) domain dqs_4128 PF01189 16S rRNA methyltransferase RsmB/F dqs_4128 PF01029 NusB family dqs_4129 PF17284 Spermidine synthase tetramerisation domain dqs_4130 PF01925 Sulfite exporter TauE/SafE dqs_4131 PF01926 50S ribosome-binding GTPase dqs_4131 PF10396 GTP-binding protein TrmE N-terminus dqs_4131 PF12631 MnmE helical domain dqs_4132 PF02096 60Kd inner membrane protein dqs_4132 PF14849 YidC periplasmic domain dqs_4133 PF01809 Putative membrane protein insertion efficiency factor dqs_4134 PF00825 Ribonuclease P dqs_4135 PF00468 Ribosomal protein L34