dqs_0001 SM00382 ATPases associated with a variety of cellular activities dqs_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain dqs_0002 SM00480 DNA polymerase III beta subunit dqs_0003 SM00387 Histidine kinase-like ATPases dqs_0003 SM00433 TopoisomeraseII dqs_0006 SM00487 DEAD-like helicases superfamily dqs_0008 SM00953 dqs_0008 dqs_0021 SM00822 dqs_0021 dqs_0032 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain dqs_0035 SM00903 Flavin reductase like domain dqs_0050 SM00342 helix_turn_helix, arabinose operon control protein dqs_0054 SM00797 Allophanate hydrolase subunit 2 dqs_0055 SM00796 Allophanate hydrolase subunit 1 dqs_0063 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0063 SM00387 Histidine kinase-like ATPases dqs_0063 SM00388 His Kinase A (phosphoacceptor) domain dqs_0064 SM00448 cheY-homologous receiver domain dqs_0064 SM00862 Transcriptional regulatory protein, C terminal dqs_0065 SM00382 ATPases associated with a variety of cellular activities dqs_0069 SM01359 dqs_0069 dqs_0069 SM01360 dqs_0069 dqs_0077 SM00479 dqs_0077 dqs_0081 SM00382 ATPases associated with a variety of cellular activities dqs_0081 SM00448 cheY-homologous receiver domain dqs_0082 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0082 SM00387 Histidine kinase-like ATPases dqs_0082 SM00388 His Kinase A (phosphoacceptor) domain dqs_0084 SM00327 von Willebrand factor (vWF) type A domain dqs_0096 SM00841 Elongation factor P, C-terminal dqs_0096 SM01185 dqs_0096 dqs_0098 SM00382 ATPases associated with a variety of cellular activities dqs_0101 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_0101 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0102 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_0105 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain dqs_0105 SM00437 Bacterial DNA topoisomerase I DNA-binding domain dqs_0105 SM00493 dqs_0105 dqs_0108 SM00257 Lysin motif dqs_0113 SM00460 Transglutaminase/protease-like homologues dqs_0114 SM01049 dqs_0114 dqs_0121 SM00829 Enoylreductase dqs_0127 SM00382 ATPases associated with a variety of cellular activities dqs_0128 SM00382 ATPases associated with a variety of cellular activities dqs_0138 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_0138 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0139 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_0139 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0143 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0143 SM00267 diguanylate cyclase dqs_0143 SM00448 cheY-homologous receiver domain dqs_0144 SM00448 cheY-homologous receiver domain dqs_0145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0145 SM00387 Histidine kinase-like ATPases dqs_0147 SM00046 Diacylglycerol kinase catalytic domain (presumed) dqs_0149 SM00897 FIST N domain dqs_0149 SM01204 dqs_0149 dqs_0150 SM01228 dqs_0150 dqs_0155 SM00470 ParB-like nuclease domain dqs_0157 SM00563 Phosphate acyltransferases dqs_0159 SM00563 Phosphate acyltransferases dqs_0160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor dqs_0168 SM00382 ATPases associated with a variety of cellular activities dqs_0173 SM00448 cheY-homologous receiver domain dqs_0173 SM00862 Transcriptional regulatory protein, C terminal dqs_0174 SM00387 Histidine kinase-like ATPases dqs_0174 SM00388 His Kinase A (phosphoacceptor) domain dqs_0179 SM00845 GatB domain dqs_0189 SM00936 Penicillin-binding protein 5, C-terminal domain dqs_0193 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_0208 SM00528 Domain in histone-like proteins of HNS family dqs_0220 SM00342 helix_turn_helix, arabinose operon control protein dqs_0226 SM00344 helix_turn_helix ASNC type dqs_0235 SM00382 ATPases associated with a variety of cellular activities dqs_0276 SM00387 Histidine kinase-like ATPases dqs_0276 SM00388 His Kinase A (phosphoacceptor) domain dqs_0277 SM00448 cheY-homologous receiver domain dqs_0277 SM00862 Transcriptional regulatory protein, C terminal dqs_0284 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_0302 SM00382 ATPases associated with a variety of cellular activities dqs_0309 SM00849 Metallo-beta-lactamase superfamily dqs_0326 SM00382 ATPases associated with a variety of cellular activities dqs_0327 SM00382 ATPases associated with a variety of cellular activities dqs_0328 SM00411 bacterial (prokaryotic) histone like domain dqs_0329 SM00487 DEAD-like helicases superfamily dqs_0329 SM00490 helicase superfamily c-terminal domain dqs_0348 SM00052 Putative diguanylate phosphodiesterase dqs_0349 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0349 SM00091 PAS domain dqs_0349 SM00267 diguanylate cyclase dqs_0372 SM00382 ATPases associated with a variety of cellular activities dqs_0377 SM00450 Rhodanese Homology Domain dqs_0379 SM00530 Helix-turn-helix XRE-family like proteins dqs_0392 SM00836 DALR anticodon binding domain dqs_0392 SM01016 Arginyl tRNA synthetase N terminal dom dqs_0401 SM00849 Metallo-beta-lactamase superfamily dqs_0402 SM00422 helix_turn_helix, mercury resistance dqs_0409 SM00849 Metallo-beta-lactamase superfamily dqs_0413 SM00448 cheY-homologous receiver domain dqs_0414 SM00138 Methyltransferase, chemotaxis proteins dqs_0416 SM00260 Two component signalling adaptor domain dqs_0417 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_0417 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0418 SM00073 Histidine Phosphotransfer domain dqs_0418 SM00260 Two component signalling adaptor domain dqs_0418 SM00387 Histidine kinase-like ATPases dqs_0418 SM01231 dqs_0418 dqs_0420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_0421 SM00448 cheY-homologous receiver domain dqs_0435 SM00382 ATPases associated with a variety of cellular activities dqs_0435 SM01086 C-terminal, D2-small domain, of ClpB protein dqs_0437 SM00091 PAS domain dqs_0437 SM00267 diguanylate cyclase dqs_0437 SM01079 dqs_0437 dqs_0438 SM00363 S4 RNA-binding domain dqs_0447 SM00870 dqs_0447 dqs_0449 SM00870 dqs_0449 dqs_0450 SM00382 ATPases associated with a variety of cellular activities dqs_0453 SM00062 Bacterial periplasmic substrate-binding proteins dqs_0453 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. dqs_0456 SM00487 DEAD-like helicases superfamily dqs_0456 SM00490 helicase superfamily c-terminal domain dqs_0458 SM00382 ATPases associated with a variety of cellular activities dqs_0458 SM00448 cheY-homologous receiver domain dqs_0459 SM00387 Histidine kinase-like ATPases dqs_0459 SM00388 His Kinase A (phosphoacceptor) domain dqs_0461 SM00091 PAS domain dqs_0461 SM00267 diguanylate cyclase dqs_0461 SM01079 dqs_0461 dqs_0464 SM00382 ATPases associated with a variety of cellular activities dqs_0466 SM00833 Cobalamin synthesis protein cobW C-terminal domain dqs_0468 SM00448 cheY-homologous receiver domain dqs_0468 SM00862 Transcriptional regulatory protein, C terminal dqs_0469 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0469 SM00387 Histidine kinase-like ATPases dqs_0469 SM00388 His Kinase A (phosphoacceptor) domain dqs_0488 SM00487 DEAD-like helicases superfamily dqs_0488 SM00490 helicase superfamily c-terminal domain dqs_0495 SM00240 Forkhead associated domain dqs_0508 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0508 SM00091 PAS domain dqs_0508 SM00267 diguanylate cyclase dqs_0509 SM00062 Bacterial periplasmic substrate-binding proteins dqs_0515 SM00382 ATPases associated with a variety of cellular activities dqs_0517 SM00382 ATPases associated with a variety of cellular activities dqs_0523 SM00900 dqs_0523 dqs_0528 SM00091 PAS domain dqs_0528 SM00387 Histidine kinase-like ATPases dqs_0529 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_0529 SM00382 ATPases associated with a variety of cellular activities dqs_0536 SM00849 Metallo-beta-lactamase superfamily dqs_0544 SM00671 Sel1-like repeats. dqs_0555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_0555 SM01049 dqs_0555 dqs_0575 SM00052 Putative diguanylate phosphodiesterase dqs_0575 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0575 SM00267 diguanylate cyclase dqs_0578 SM00387 Histidine kinase-like ATPases dqs_0579 SM00421 helix_turn_helix, Lux Regulon dqs_0579 SM00448 cheY-homologous receiver domain dqs_0595 SM00411 bacterial (prokaryotic) histone like domain dqs_0602 SM00644 dqs_0602 dqs_0650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_0650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0655 SM00363 S4 RNA-binding domain dqs_0656 SM00996 S-adenosyl-L-homocysteine hydrolase dqs_0656 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain dqs_0666 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase dqs_0669 SM00382 ATPases associated with a variety of cellular activities dqs_0670 SM00278 Helix-hairpin-helix DNA-binding motif class 1 dqs_0673 SM00899 dqs_0673 dqs_0677 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. dqs_0680 SM00382 ATPases associated with a variety of cellular activities dqs_0691 SM00052 Putative diguanylate phosphodiesterase dqs_0691 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0691 SM00091 PAS domain dqs_0691 SM00267 diguanylate cyclase dqs_0691 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0693 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0693 SM00091 PAS domain dqs_0697 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain dqs_0697 SM01080 dqs_0697 dqs_0700 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_0700 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_0711 SM00382 ATPases associated with a variety of cellular activities dqs_0715 SM00382 ATPases associated with a variety of cellular activities dqs_0717 SM00421 helix_turn_helix, Lux Regulon dqs_0721 SM00052 Putative diguanylate phosphodiesterase dqs_0721 SM00267 diguanylate cyclase dqs_0721 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0724 SM00387 Histidine kinase-like ATPases dqs_0724 SM00388 His Kinase A (phosphoacceptor) domain dqs_0724 SM00448 cheY-homologous receiver domain dqs_0725 SM00421 helix_turn_helix, Lux Regulon dqs_0725 SM00448 cheY-homologous receiver domain dqs_0729 SM00382 ATPases associated with a variety of cellular activities dqs_0734 SM00195 Dual specificity phosphatase, catalytic domain dqs_0736 SM00563 Phosphate acyltransferases dqs_0740 SM00926 Molybdopterin oxidoreductase Fe4S4 domain dqs_0747 SM00382 ATPases associated with a variety of cellular activities dqs_0752 SM01091 Transporter associated domain dqs_0753 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_0753 SM00895 dqs_0753 dqs_0758 SM00878 Biotin carboxylase C-terminal domain dqs_0759 SM00052 Putative diguanylate phosphodiesterase dqs_0759 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0759 SM00091 PAS domain dqs_0759 SM00267 diguanylate cyclase dqs_0760 SM00267 diguanylate cyclase dqs_0763 SM00448 cheY-homologous receiver domain dqs_0763 SM00862 Transcriptional regulatory protein, C terminal dqs_0764 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0764 SM00091 PAS domain dqs_0764 SM00387 Histidine kinase-like ATPases dqs_0764 SM00388 His Kinase A (phosphoacceptor) domain dqs_0764 SM00448 cheY-homologous receiver domain dqs_0765 SM00342 helix_turn_helix, arabinose operon control protein dqs_0772 SM00387 Histidine kinase-like ATPases dqs_0772 SM00388 His Kinase A (phosphoacceptor) domain dqs_0773 SM00448 cheY-homologous receiver domain dqs_0773 SM00862 Transcriptional regulatory protein, C terminal dqs_0774 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_0774 SM00924 MgtE intracellular N domain dqs_0778 SM00955 dqs_0778 dqs_0785 SM00382 ATPases associated with a variety of cellular activities dqs_0785 SM00487 DEAD-like helicases superfamily dqs_0785 SM00490 helicase superfamily c-terminal domain dqs_0785 SM00847 Helicase associated domain (HA2) Add an annotation dqs_0791 SM00382 ATPases associated with a variety of cellular activities dqs_0799 SM00925 MltA specific insert domain dqs_0809 SM00382 ATPases associated with a variety of cellular activities dqs_0809 SM00448 cheY-homologous receiver domain dqs_0810 SM00387 Histidine kinase-like ATPases dqs_0810 SM00388 His Kinase A (phosphoacceptor) domain dqs_0812 SM01230 dqs_0812 dqs_0814 SM00450 Rhodanese Homology Domain dqs_0817 SM00155 Phospholipase D. Active site motifs. dqs_0818 SM00881 CoA binding domain dqs_0829 SM01400 dqs_0829 dqs_0833 SM00028 Tetratricopeptide repeats dqs_0834 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain dqs_0834 SM01232 dqs_0834 dqs_0841 SM00382 ATPases associated with a variety of cellular activities dqs_0841 SM00962 SRP54-type protein, GTPase domain dqs_0841 SM00963 SRP54-type protein, helical bundle domain dqs_0842 SM00382 ATPases associated with a variety of cellular activities dqs_0848 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_0851 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_0851 SM01091 Transporter associated domain dqs_0858 SM00563 Phosphate acyltransferases dqs_0864 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_0873 SM00382 ATPases associated with a variety of cellular activities dqs_0874 SM00028 Tetratricopeptide repeats dqs_0876 SM00382 ATPases associated with a variety of cellular activities dqs_0882 SM00382 ATPases associated with a variety of cellular activities dqs_0891 SM00919 Malic enzyme, NAD binding domain dqs_0891 SM01274 dqs_0891 dqs_0894 SM00346 helix_turn_helix isocitrate lyase regulation dqs_0898 SM00363 S4 RNA-binding domain dqs_0900 SM00342 helix_turn_helix, arabinose operon control protein dqs_0905 SM00382 ATPases associated with a variety of cellular activities dqs_0910 SM00487 DEAD-like helicases superfamily dqs_0910 SM00490 helicase superfamily c-terminal domain dqs_0913 SM01057 Eukaryotic-type carbonic anhydrase dqs_0914 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_0920 SM00450 Rhodanese Homology Domain dqs_0925 SM00563 Phosphate acyltransferases dqs_0933 SM00878 Biotin carboxylase C-terminal domain dqs_0940 SM00749 bacterial OsmY and nodulation domain dqs_0959 SM00842 Cell division protein FtsA dqs_0960 SM00864 Tubulin/FtsZ family, GTPase domain dqs_0960 SM00865 Tubulin/FtsZ family, C-terminal domain dqs_0964 SM00957 SecA DEAD-like domain dqs_0964 SM00958 SecA preprotein cross-linking domain dqs_0967 SM00331 Sigma factor PP2C-like phosphatases dqs_0967 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain dqs_0968 SM00028 Tetratricopeptide repeats dqs_0968 SM00257 Lysin motif dqs_0969 SM00220 Serine/Threonine protein kinases, catalytic domain dqs_0969 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_0970 SM00240 Forkhead associated domain dqs_0976 SM01323 dqs_0976 dqs_0985 SM01091 Transporter associated domain dqs_0988 SM00977 TilS substrate C-terminal domain dqs_0989 SM00421 helix_turn_helix, Lux Regulon dqs_0989 SM00448 cheY-homologous receiver domain dqs_0990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_0990 SM00091 PAS domain dqs_0990 SM00387 Histidine kinase-like ATPases dqs_0990 SM00388 His Kinase A (phosphoacceptor) domain dqs_0995 SM00562 dqs_0995 dqs_0997 SM00028 Tetratricopeptide repeats dqs_1002 SM00564 beta-propeller repeat dqs_1003 SM00382 ATPases associated with a variety of cellular activities dqs_1006 SM00244 prohibitin homologues dqs_1007 SM00244 prohibitin homologues dqs_1010 SM00788 Adenylosuccinate synthetase dqs_1013 SM00316 Ribosomal protein S1-like RNA-binding domain dqs_1013 SM00357 Cold shock protein domain dqs_1013 SM00955 dqs_1013 dqs_1014 SM00967 RNA 2'-O ribose methyltransferase substrate binding dqs_1015 SM01012 dqs_1015 dqs_1018 SM00382 ATPases associated with a variety of cellular activities dqs_1021 SM00926 Molybdopterin oxidoreductase Fe4S4 domain dqs_1022 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_1024 SM00052 Putative diguanylate phosphodiesterase dqs_1024 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1024 SM00267 diguanylate cyclase dqs_1031 SM00382 ATPases associated with a variety of cellular activities dqs_1033 SM00493 dqs_1033 dqs_1046 SM00382 ATPases associated with a variety of cellular activities dqs_1047 SM00883 Chaperonin 10 Kd subunit dqs_1049 SM00448 cheY-homologous receiver domain dqs_1049 SM00862 Transcriptional regulatory protein, C terminal dqs_1050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_1050 SM00387 Histidine kinase-like ATPases dqs_1050 SM00388 His Kinase A (phosphoacceptor) domain dqs_1053 SM00448 cheY-homologous receiver domain dqs_1053 SM00862 Transcriptional regulatory protein, C terminal dqs_1072 SM00382 ATPases associated with a variety of cellular activities dqs_1082 SM00937 dqs_1082 dqs_1089 SM00100 Cyclic nucleotide-monophosphate binding domain dqs_1089 SM00220 Serine/Threonine protein kinases, catalytic domain dqs_1092 SM00448 cheY-homologous receiver domain dqs_1092 SM00850 LytTr DNA-binding domain dqs_1098 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_1098 SM00895 dqs_1098 dqs_1103 SM00331 Sigma factor PP2C-like phosphatases dqs_1103 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain dqs_1104 SM01002 Alanine dehydrogenase/PNT, C-terminal domain dqs_1104 SM01003 Alanine dehydrogenase/PNT, N-terminal domain dqs_1108 SM00052 Putative diguanylate phosphodiesterase dqs_1108 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1108 SM00091 PAS domain dqs_1108 SM00267 diguanylate cyclase dqs_1109 SM00487 DEAD-like helicases superfamily dqs_1109 SM00490 helicase superfamily c-terminal domain dqs_1120 SM00363 S4 RNA-binding domain dqs_1124 SM00822 dqs_1124 dqs_1125 SM00822 dqs_1125 dqs_1127 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_1137 SM00357 Cold shock protein domain dqs_1137 SM00382 ATPases associated with a variety of cellular activities dqs_1137 SM00959 Rho termination factor, N-terminal domain dqs_1140 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_1149 SM01329 dqs_1149 dqs_1150 SM00859 Semialdehyde dehydrogenase, NAD binding domain dqs_1167 SM00028 Tetratricopeptide repeats dqs_1168 SM00840 dqs_1168 dqs_1170 SM00271 DnaJ molecular chaperone homology domain dqs_1174 SM00434 DNA Topoisomerase IV dqs_1176 SM00830 Chorismate mutase type II dqs_1180 SM00316 Ribosomal protein S1-like RNA-binding domain dqs_1181 SM00411 bacterial (prokaryotic) histone like domain dqs_1183 SM00028 Tetratricopeptide repeats dqs_1184 SM00984 UDP binding domain dqs_1188 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain dqs_1193 SM00873 B3/4 domain dqs_1193 SM00874 tRNA synthetase B5 domain dqs_1193 SM00896 Ferredoxin-fold anticodon binding domain dqs_1194 SM00411 bacterial (prokaryotic) histone like domain dqs_1195 SM00422 helix_turn_helix, mercury resistance dqs_1199 SM00257 Lysin motif dqs_1202 SM00460 Transglutaminase/protease-like homologues dqs_1204 SM00382 ATPases associated with a variety of cellular activities dqs_1206 SM01130 dqs_1206 dqs_1209 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. dqs_1216 SM00382 ATPases associated with a variety of cellular activities dqs_1216 SM00962 SRP54-type protein, GTPase domain dqs_1220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_1220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_1223 SM00434 DNA Topoisomerase IV dqs_1226 SM00387 Histidine kinase-like ATPases dqs_1226 SM00433 TopoisomeraseII dqs_1229 SM00342 helix_turn_helix, arabinose operon control protein dqs_1238 SM00382 ATPases associated with a variety of cellular activities dqs_1239 SM00382 ATPases associated with a variety of cellular activities dqs_1243 SM00382 ATPases associated with a variety of cellular activities dqs_1243 SM01086 C-terminal, D2-small domain, of ClpB protein dqs_1245 SM00357 Cold shock protein domain dqs_1258 SM01329 dqs_1258 dqs_1260 SM00838 Elongation factor G C-terminus dqs_1260 SM00889 Elongation factor G, domain IV dqs_1278 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_1278 SM00895 dqs_1278 dqs_1287 SM00357 Cold shock protein domain dqs_1291 SM00219 Tyrosine kinase, catalytic domain dqs_1291 SM00331 Sigma factor PP2C-like phosphatases dqs_1291 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain dqs_1296 SM01235 dqs_1296 dqs_1300 SM00530 Helix-turn-helix XRE-family like proteins dqs_1304 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_1313 SM00861 Transketolase, pyrimidine binding domain dqs_1321 SM00904 Riboflavin kinase dqs_1323 SM00849 Metallo-beta-lactamase superfamily dqs_1325 SM00833 Cobalamin synthesis protein cobW C-terminal domain dqs_1326 SM00320 WD40 repeats dqs_1331 SM00382 ATPases associated with a variety of cellular activities dqs_1340 SM00382 ATPases associated with a variety of cellular activities dqs_1349 SM00382 ATPases associated with a variety of cellular activities dqs_1351 SM00382 ATPases associated with a variety of cellular activities dqs_1358 SM00646 dqs_1358 dqs_1361 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain dqs_1369 SM00267 diguanylate cyclase dqs_1369 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_1371 SM00220 Serine/Threonine protein kinases, catalytic domain dqs_1379 SM00255 Toll - interleukin 1 - resistance dqs_1379 SM00603 dqs_1379 dqs_1381 SM00271 DnaJ molecular chaperone homology domain dqs_1388 SM00382 ATPases associated with a variety of cellular activities dqs_1390 SM00382 ATPases associated with a variety of cellular activities dqs_1393 SM00052 Putative diguanylate phosphodiesterase dqs_1393 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1393 SM00091 PAS domain dqs_1393 SM00267 diguanylate cyclase dqs_1409 SM00220 Serine/Threonine protein kinases, catalytic domain dqs_1409 SM00331 Sigma factor PP2C-like phosphatases dqs_1409 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain dqs_1411 SM00855 Phosphoglycerate mutase family dqs_1412 SM00880 dqs_1412 dqs_1412 SM01118 dqs_1412 dqs_1436 SM00382 ATPases associated with a variety of cellular activities dqs_1438 SM00978 dqs_1438 dqs_1440 SM00342 helix_turn_helix, arabinose operon control protein dqs_1449 SM00062 Bacterial periplasmic substrate-binding proteins dqs_1452 SM00062 Bacterial periplasmic substrate-binding proteins dqs_1454 SM00382 ATPases associated with a variety of cellular activities dqs_1459 SM00822 dqs_1459 dqs_1473 SM00100 Cyclic nucleotide-monophosphate binding domain dqs_1473 SM00419 helix_turn_helix, cAMP Regulatory protein dqs_1474 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_1476 SM00422 helix_turn_helix, mercury resistance dqs_1479 SM00052 Putative diguanylate phosphodiesterase dqs_1479 SM00091 PAS domain dqs_1479 SM00267 diguanylate cyclase dqs_1479 SM01049 dqs_1479 dqs_1483 SM00938 Nitrogen regulatory protein P-II dqs_1484 SM00463 Small MutS-related domain dqs_1486 SM00100 Cyclic nucleotide-monophosphate binding domain dqs_1486 SM00419 helix_turn_helix, cAMP Regulatory protein dqs_1487 SM00843 dqs_1487 dqs_1489 SM00382 ATPases associated with a variety of cellular activities dqs_1492 SM00091 PAS domain dqs_1492 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_1492 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_1497 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1497 SM00091 PAS domain dqs_1497 SM00387 Histidine kinase-like ATPases dqs_1497 SM00388 His Kinase A (phosphoacceptor) domain dqs_1498 SM00421 helix_turn_helix, Lux Regulon dqs_1498 SM00448 cheY-homologous receiver domain dqs_1500 SM01001 AIR carboxylase dqs_1504 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain dqs_1505 SM00851 MGS-like domain dqs_1505 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain dqs_1508 SM01103 dqs_1508 dqs_1510 SM00382 ATPases associated with a variety of cellular activities dqs_1516 SM00382 ATPases associated with a variety of cellular activities dqs_1525 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_1526 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region dqs_1536 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_1537 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region dqs_1549 SM00387 Histidine kinase-like ATPases dqs_1551 SM00347 helix_turn_helix multiple antibiotic resistance protein dqs_1552 SM00849 Metallo-beta-lactamase superfamily dqs_1555 SM00382 ATPases associated with a variety of cellular activities dqs_1559 SM00478 endonuclease III dqs_1559 SM00525 dqs_1559 dqs_1561 SM00900 dqs_1561 dqs_1566 SM00507 HNH nucleases dqs_1568 SM00267 diguanylate cyclase dqs_1568 SM00448 cheY-homologous receiver domain dqs_1569 SM00052 Putative diguanylate phosphodiesterase dqs_1569 SM00267 diguanylate cyclase dqs_1569 SM00448 cheY-homologous receiver domain dqs_1574 SM00448 cheY-homologous receiver domain dqs_1575 SM00073 Histidine Phosphotransfer domain dqs_1575 SM00260 Two component signalling adaptor domain dqs_1575 SM00387 Histidine kinase-like ATPases dqs_1575 SM01231 dqs_1575 dqs_1576 SM00260 Two component signalling adaptor domain dqs_1577 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_1577 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_1578 SM00138 Methyltransferase, chemotaxis proteins dqs_1579 SM00448 cheY-homologous receiver domain dqs_1580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_1581 SM00260 Two component signalling adaptor domain dqs_1581 SM00448 cheY-homologous receiver domain dqs_1582 SM00260 Two component signalling adaptor domain dqs_1582 SM00448 cheY-homologous receiver domain dqs_1583 SM00448 cheY-homologous receiver domain dqs_1585 SM00073 Histidine Phosphotransfer domain dqs_1585 SM00260 Two component signalling adaptor domain dqs_1585 SM00387 Histidine kinase-like ATPases dqs_1585 SM01231 dqs_1585 dqs_1599 SM00052 Putative diguanylate phosphodiesterase dqs_1599 SM00267 diguanylate cyclase dqs_1601 SM00422 helix_turn_helix, mercury resistance dqs_1609 SM00052 Putative diguanylate phosphodiesterase dqs_1609 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_1612 SM00506 Appr-1"-p processing enzyme dqs_1613 SM00052 Putative diguanylate phosphodiesterase dqs_1613 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_1613 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1613 SM00091 PAS domain dqs_1613 SM00267 diguanylate cyclase dqs_1613 SM00448 cheY-homologous receiver domain dqs_1614 SM00448 cheY-homologous receiver domain dqs_1615 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1615 SM00091 PAS domain dqs_1615 SM00387 Histidine kinase-like ATPases dqs_1615 SM00388 His Kinase A (phosphoacceptor) domain dqs_1620 SM00937 dqs_1620 dqs_1623 SM00671 Sel1-like repeats. dqs_1624 SM00671 Sel1-like repeats. dqs_1626 SM00421 helix_turn_helix, Lux Regulon dqs_1626 SM00448 cheY-homologous receiver domain dqs_1627 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_1630 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_1633 SM00382 ATPases associated with a variety of cellular activities dqs_1635 SM00849 Metallo-beta-lactamase superfamily dqs_1641 SM00479 dqs_1641 dqs_1658 SM00052 Putative diguanylate phosphodiesterase dqs_1658 SM00267 diguanylate cyclase dqs_1661 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_1663 SM00861 Transketolase, pyrimidine binding domain dqs_1667 SM00052 Putative diguanylate phosphodiesterase dqs_1667 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1667 SM00091 PAS domain dqs_1667 SM00267 diguanylate cyclase dqs_1671 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_1671 SM00866 dqs_1671 dqs_1678 SM00861 Transketolase, pyrimidine binding domain dqs_1683 SM00487 DEAD-like helicases superfamily dqs_1683 SM00491 dqs_1683 dqs_1685 SM00852 Probable molybdopterin binding domain dqs_1689 SM00382 ATPases associated with a variety of cellular activities dqs_1689 SM01086 C-terminal, D2-small domain, of ClpB protein dqs_1690 SM00052 Putative diguanylate phosphodiesterase dqs_1690 SM00267 diguanylate cyclase dqs_1690 SM01079 dqs_1690 dqs_1703 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_1703 SM01240 dqs_1703 dqs_1707 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_1707 SM00387 Histidine kinase-like ATPases dqs_1707 SM00388 His Kinase A (phosphoacceptor) domain dqs_1707 SM00448 cheY-homologous receiver domain dqs_1710 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1710 SM00091 PAS domain dqs_1710 SM00387 Histidine kinase-like ATPases dqs_1710 SM00388 His Kinase A (phosphoacceptor) domain dqs_1722 SM00248 ankyrin repeats dqs_1725 SM00460 Transglutaminase/protease-like homologues dqs_1727 SM00460 Transglutaminase/protease-like homologues dqs_1730 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_1736 SM00487 DEAD-like helicases superfamily dqs_1736 SM00490 helicase superfamily c-terminal domain dqs_1737 SM00226 Low molecular weight phosphatase family dqs_1738 SM00316 Ribosomal protein S1-like RNA-binding domain dqs_1739 SM00363 S4 RNA-binding domain dqs_1749 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. dqs_1750 SM00822 dqs_1750 dqs_1752 SM00825 Beta-ketoacyl synthase dqs_1759 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_1767 SM00358 Double-stranded RNA binding motif dqs_1767 SM00535 Ribonuclease III family dqs_1773 SM00278 Helix-hairpin-helix DNA-binding motif class 1 dqs_1773 SM00465 GIY-YIG type nucleases (URI domain) dqs_1803 SM00869 Autotransporter beta-domain dqs_1809 SM00316 Ribosomal protein S1-like RNA-binding domain dqs_1809 SM00732 Likely ribonuclease with RNase H fold. dqs_1811 SM00881 CoA binding domain dqs_1812 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1812 SM00091 PAS domain dqs_1812 SM00387 Histidine kinase-like ATPases dqs_1812 SM00388 His Kinase A (phosphoacceptor) domain dqs_1814 SM00450 Rhodanese Homology Domain dqs_1817 SM00382 ATPases associated with a variety of cellular activities dqs_1821 SM00052 Putative diguanylate phosphodiesterase dqs_1821 SM00267 diguanylate cyclase dqs_1823 SM00487 DEAD-like helicases superfamily dqs_1823 SM00490 helicase superfamily c-terminal domain dqs_1823 SM00982 dqs_1823 dqs_1823 SM01058 CarD-like/TRCF domain dqs_1828 SM00419 helix_turn_helix, cAMP Regulatory protein dqs_1838 SM00954 Region found in RelA / SpoT proteins dqs_1842 SM00382 ATPases associated with a variety of cellular activities dqs_1849 SM00893 Electron transfer flavoprotein domain dqs_1850 SM00893 Electron transfer flavoprotein domain dqs_1858 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_1858 SM00387 Histidine kinase-like ATPases dqs_1858 SM00388 His Kinase A (phosphoacceptor) domain dqs_1859 SM00448 cheY-homologous receiver domain dqs_1859 SM00862 Transcriptional regulatory protein, C terminal dqs_1863 SM00986 Uracil DNA glycosylase superfamily dqs_1863 SM00987 UreE urease accessory protein, C-terminal domain dqs_1866 SM00382 ATPases associated with a variety of cellular activities dqs_1875 SM00642 Alpha-amylase domain dqs_1876 SM00642 Alpha-amylase domain dqs_1877 SM00642 Alpha-amylase domain dqs_1890 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen dqs_1898 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_1902 SM00749 bacterial OsmY and nodulation domain dqs_1903 SM00155 Phospholipase D. Active site motifs. dqs_1910 SM00822 dqs_1910 dqs_1913 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_1914 SM00749 bacterial OsmY and nodulation domain dqs_1925 SM00421 helix_turn_helix, Lux Regulon dqs_1927 SM00644 dqs_1927 dqs_1932 SM00155 Phospholipase D. Active site motifs. dqs_1935 SM00014 Acid phosphatase homologues dqs_1943 SM00642 Alpha-amylase domain dqs_1945 SM00642 Alpha-amylase domain dqs_1947 SM00642 Alpha-amylase domain dqs_1948 SM00642 Alpha-amylase domain dqs_1957 SM00822 dqs_1957 dqs_1961 SM00382 ATPases associated with a variety of cellular activities dqs_1961 SM00448 cheY-homologous receiver domain dqs_1966 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_1966 SM00091 PAS domain dqs_1966 SM00387 Histidine kinase-like ATPases dqs_1966 SM00388 His Kinase A (phosphoacceptor) domain dqs_1966 SM00448 cheY-homologous receiver domain dqs_1970 SM00382 ATPases associated with a variety of cellular activities dqs_1970 SM00448 cheY-homologous receiver domain dqs_1983 SM00478 endonuclease III dqs_1991 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_1992 SM00382 ATPases associated with a variety of cellular activities dqs_1992 SM00989 dqs_1992 dqs_2009 SM00859 Semialdehyde dehydrogenase, NAD binding domain dqs_2034 SM00052 Putative diguanylate phosphodiesterase dqs_2034 SM00267 diguanylate cyclase dqs_2034 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_2037 SM00382 ATPases associated with a variety of cellular activities dqs_2041 SM00631 dqs_2041 dqs_2048 SM00967 RNA 2'-O ribose methyltransferase substrate binding dqs_2055 SM00935 Outer membrane protein (OmpH-like) dqs_2057 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_2066 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_2069 SM00448 cheY-homologous receiver domain dqs_2070 SM00387 Histidine kinase-like ATPases dqs_2070 SM00388 His Kinase A (phosphoacceptor) domain dqs_2076 SM00893 Electron transfer flavoprotein domain dqs_2077 SM00893 Electron transfer flavoprotein domain dqs_2090 SM00347 helix_turn_helix multiple antibiotic resistance protein dqs_2091 SM00342 helix_turn_helix, arabinose operon control protein dqs_2094 SM00903 Flavin reductase like domain dqs_2098 SM00903 Flavin reductase like domain dqs_2100 SM00342 helix_turn_helix, arabinose operon control protein dqs_2104 SM00342 helix_turn_helix, arabinose operon control protein dqs_2109 SM00822 dqs_2109 dqs_2117 SM00903 Flavin reductase like domain dqs_2119 SM00342 helix_turn_helix, arabinose operon control protein dqs_2120 SM00342 helix_turn_helix, arabinose operon control protein dqs_2124 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_2124 SM00895 dqs_2124 dqs_2126 SM00829 Enoylreductase dqs_2128 SM00859 Semialdehyde dehydrogenase, NAD binding domain dqs_2147 SM00382 ATPases associated with a variety of cellular activities dqs_2148 SM00382 ATPases associated with a variety of cellular activities dqs_2150 SM01007 Class II Aldolase and Adducin N-terminal domain dqs_2152 SM00347 helix_turn_helix multiple antibiotic resistance protein dqs_2154 SM00838 Elongation factor G C-terminus dqs_2156 SM00278 Helix-hairpin-helix DNA-binding motif class 1 dqs_2156 SM00292 breast cancer carboxy-terminal domain dqs_2156 SM00532 Ligase N family dqs_2157 SM00771 ZipA, C-terminal domain (FtsZ-binding) dqs_2164 SM00448 cheY-homologous receiver domain dqs_2178 SM00533 DNA-binding domain of DNA mismatch repair MUTS family dqs_2178 SM00534 ATPase domain of DNA mismatch repair MUTS family dqs_2180 SM00479 dqs_2180 dqs_2183 SM00849 Metallo-beta-lactamase superfamily dqs_2184 SM00448 cheY-homologous receiver domain dqs_2185 SM00267 diguanylate cyclase dqs_2185 SM00448 cheY-homologous receiver domain dqs_2187 SM00382 ATPases associated with a variety of cellular activities dqs_2194 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_2198 SM00382 ATPases associated with a variety of cellular activities dqs_2198 SM00464 Found in ATP-dependent protease La (LON) dqs_2199 SM00382 ATPases associated with a variety of cellular activities dqs_2199 SM00994 ClpX C4-type zinc finger dqs_2199 SM01086 C-terminal, D2-small domain, of ClpB protein dqs_2202 SM00763 PrkA AAA domain dqs_2206 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_2215 SM00421 helix_turn_helix, Lux Regulon dqs_2235 SM00316 Ribosomal protein S1-like RNA-binding domain dqs_2235 SM00322 K homology RNA-binding domain dqs_2236 SM01387 dqs_2236 dqs_2240 SM00316 Ribosomal protein S1-like RNA-binding domain dqs_2242 SM00363 S4 RNA-binding domain dqs_2247 SM00481 DNA polymerase alpha chain like domain dqs_2253 SM00357 Cold shock protein domain dqs_2254 SM00487 DEAD-like helicases superfamily dqs_2254 SM00490 helicase superfamily c-terminal domain dqs_2258 SM01322 dqs_2258 dqs_2260 SM00267 diguanylate cyclase dqs_2264 SM00382 ATPases associated with a variety of cellular activities dqs_2275 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_2277 SM01192 dqs_2277 dqs_2277 SM01193 dqs_2277 dqs_2291 SM01211 dqs_2291 dqs_2292 SM00014 Acid phosphatase homologues dqs_2296 SM00014 Acid phosphatase homologues dqs_2304 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_2304 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_2331 SM00670 Large family of predicted nucleotide-binding domains dqs_2332 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_2333 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_2334 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_2335 SM00479 dqs_2335 dqs_2340 SM00382 ATPases associated with a variety of cellular activities dqs_2344 SM01092 CO dehydrogenase flavoprotein C-terminal domain dqs_2345 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain dqs_2347 SM00382 ATPases associated with a variety of cellular activities dqs_2355 SM00382 ATPases associated with a variety of cellular activities dqs_2358 SM00052 Putative diguanylate phosphodiesterase dqs_2358 SM00267 diguanylate cyclase dqs_2359 SM00646 dqs_2359 dqs_2360 SM00052 Putative diguanylate phosphodiesterase dqs_2360 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2360 SM00091 PAS domain dqs_2360 SM00267 diguanylate cyclase dqs_2361 SM00062 Bacterial periplasmic substrate-binding proteins dqs_2365 SM00984 UDP binding domain dqs_2392 SM00342 helix_turn_helix, arabinose operon control protein dqs_2393 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_2393 SM00895 dqs_2393 dqs_2394 SM00062 Bacterial periplasmic substrate-binding proteins dqs_2397 SM00382 ATPases associated with a variety of cellular activities dqs_2400 SM00244 prohibitin homologues dqs_2401 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_2401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_2411 SM00248 ankyrin repeats dqs_2411 SM00450 Rhodanese Homology Domain dqs_2414 SM00260 Two component signalling adaptor domain dqs_2420 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_2425 SM00342 helix_turn_helix, arabinose operon control protein dqs_2435 SM00382 ATPases associated with a variety of cellular activities dqs_2440 SM00642 Alpha-amylase domain dqs_2446 SM00382 ATPases associated with a variety of cellular activities dqs_2456 SM00267 diguanylate cyclase dqs_2456 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_2458 SM00382 ATPases associated with a variety of cellular activities dqs_2468 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_2468 SM00245 tail specific protease dqs_2481 SM00226 Low molecular weight phosphatase family dqs_2482 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor dqs_2483 SM00226 Low molecular weight phosphatase family dqs_2488 SM00342 helix_turn_helix, arabinose operon control protein dqs_2492 SM00091 PAS domain dqs_2492 SM00387 Histidine kinase-like ATPases dqs_2492 SM00388 His Kinase A (phosphoacceptor) domain dqs_2492 SM00448 cheY-homologous receiver domain dqs_2495 SM00883 Chaperonin 10 Kd subunit dqs_2502 SM00450 Rhodanese Homology Domain dqs_2503 SM00450 Rhodanese Homology Domain dqs_2509 SM00900 dqs_2509 dqs_2512 SM00450 Rhodanese Homology Domain dqs_2517 SM01007 Class II Aldolase and Adducin N-terminal domain dqs_2528 SM00382 ATPases associated with a variety of cellular activities dqs_2530 SM00062 Bacterial periplasmic substrate-binding proteins dqs_2532 SM00062 Bacterial periplasmic substrate-binding proteins dqs_2535 SM00062 Bacterial periplasmic substrate-binding proteins dqs_2536 SM00382 ATPases associated with a variety of cellular activities dqs_2541 SM00052 Putative diguanylate phosphodiesterase dqs_2546 SM00073 Histidine Phosphotransfer domain dqs_2546 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_2546 SM00387 Histidine kinase-like ATPases dqs_2546 SM00388 His Kinase A (phosphoacceptor) domain dqs_2546 SM00448 cheY-homologous receiver domain dqs_2547 SM00267 diguanylate cyclase dqs_2547 SM00448 cheY-homologous receiver domain dqs_2551 SM00344 helix_turn_helix ASNC type dqs_2552 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2552 SM00091 PAS domain dqs_2552 SM00267 diguanylate cyclase dqs_2554 SM00479 dqs_2554 dqs_2555 SM00448 cheY-homologous receiver domain dqs_2556 SM00387 Histidine kinase-like ATPases dqs_2556 SM00388 His Kinase A (phosphoacceptor) domain dqs_2562 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain dqs_2576 SM00859 Semialdehyde dehydrogenase, NAD binding domain dqs_2581 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_2581 SM00895 dqs_2581 dqs_2590 SM00382 ATPases associated with a variety of cellular activities dqs_2590 SM00989 dqs_2590 dqs_2591 SM00342 helix_turn_helix, arabinose operon control protein dqs_2593 SM00448 cheY-homologous receiver domain dqs_2593 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_2594 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2594 SM00091 PAS domain dqs_2594 SM00387 Histidine kinase-like ATPases dqs_2594 SM00388 His Kinase A (phosphoacceptor) domain dqs_2594 SM00448 cheY-homologous receiver domain dqs_2599 SM00448 cheY-homologous receiver domain dqs_2600 SM00091 PAS domain dqs_2600 SM00387 Histidine kinase-like ATPases dqs_2600 SM00388 His Kinase A (phosphoacceptor) domain dqs_2601 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2601 SM00091 PAS domain dqs_2601 SM00387 Histidine kinase-like ATPases dqs_2601 SM00388 His Kinase A (phosphoacceptor) domain dqs_2602 SM00421 helix_turn_helix, Lux Regulon dqs_2612 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_2621 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_2621 SM00382 ATPases associated with a variety of cellular activities dqs_2627 SM00382 ATPases associated with a variety of cellular activities dqs_2628 SM01116 dqs_2628 dqs_2630 SM00849 Metallo-beta-lactamase superfamily dqs_2635 SM00073 Histidine Phosphotransfer domain dqs_2635 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2635 SM00091 PAS domain dqs_2635 SM00387 Histidine kinase-like ATPases dqs_2635 SM00388 His Kinase A (phosphoacceptor) domain dqs_2635 SM00448 cheY-homologous receiver domain dqs_2637 SM00448 cheY-homologous receiver domain dqs_2637 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_2644 SM00893 Electron transfer flavoprotein domain dqs_2645 SM00893 Electron transfer flavoprotein domain dqs_2649 SM00822 dqs_2649 dqs_2654 SM00382 ATPases associated with a variety of cellular activities dqs_2655 SM00382 ATPases associated with a variety of cellular activities dqs_2662 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_2665 SM01006 Siderophore biosynthesis protein domain dqs_2668 SM00965 Secretin and TonB N terminus short domain dqs_2682 SM00052 Putative diguanylate phosphodiesterase dqs_2682 SM00091 PAS domain dqs_2682 SM00267 diguanylate cyclase dqs_2682 SM00387 Histidine kinase-like ATPases dqs_2682 SM00388 His Kinase A (phosphoacceptor) domain dqs_2682 SM00448 cheY-homologous receiver domain dqs_2683 SM00342 helix_turn_helix, arabinose operon control protein dqs_2687 SM00849 Metallo-beta-lactamase superfamily dqs_2705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_2705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_2714 SM00112 Cadherin repeats. dqs_2714 SM00736 Dystroglycan-type cadherin-like domains. dqs_2725 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_2727 SM00052 Putative diguanylate phosphodiesterase dqs_2727 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2727 SM00091 PAS domain dqs_2727 SM00267 diguanylate cyclase dqs_2735 SM00342 helix_turn_helix, arabinose operon control protein dqs_2736 SM00073 Histidine Phosphotransfer domain dqs_2736 SM00387 Histidine kinase-like ATPases dqs_2736 SM00388 His Kinase A (phosphoacceptor) domain dqs_2736 SM00448 cheY-homologous receiver domain dqs_2746 SM00220 Serine/Threonine protein kinases, catalytic domain dqs_2759 SM00028 Tetratricopeptide repeats dqs_2764 SM00357 Cold shock protein domain dqs_2769 SM01007 Class II Aldolase and Adducin N-terminal domain dqs_2773 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_2773 SM00267 diguanylate cyclase dqs_2779 SM00422 helix_turn_helix, mercury resistance dqs_2783 SM00267 diguanylate cyclase dqs_2784 SM00860 SMI1 / KNR4 family dqs_2795 SM00267 diguanylate cyclase dqs_2807 SM00271 DnaJ molecular chaperone homology domain dqs_2811 SM00867 YceI-like domain dqs_2813 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor dqs_2817 SM00421 helix_turn_helix, Lux Regulon dqs_2817 SM00448 cheY-homologous receiver domain dqs_2818 SM00387 Histidine kinase-like ATPases dqs_2818 SM00388 His Kinase A (phosphoacceptor) domain dqs_2820 SM00052 Putative diguanylate phosphodiesterase dqs_2820 SM00267 diguanylate cyclase dqs_2824 SM00945 ProQ/FINO family dqs_2826 SM00267 diguanylate cyclase dqs_2827 SM00267 diguanylate cyclase dqs_2838 SM00028 Tetratricopeptide repeats dqs_2847 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_2847 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2847 SM00091 PAS domain dqs_2847 SM00267 diguanylate cyclase dqs_2849 SM00382 ATPases associated with a variety of cellular activities dqs_2849 SM00448 cheY-homologous receiver domain dqs_2850 SM00387 Histidine kinase-like ATPases dqs_2850 SM00388 His Kinase A (phosphoacceptor) domain dqs_2854 SM00382 ATPases associated with a variety of cellular activities dqs_2867 SM00047 Lysozyme subfamily 2 dqs_2876 SM00858 dqs_2876 dqs_2880 SM00448 cheY-homologous receiver domain dqs_2880 SM00862 Transcriptional regulatory protein, C terminal dqs_2881 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_2881 SM00387 Histidine kinase-like ATPases dqs_2881 SM00388 His Kinase A (phosphoacceptor) domain dqs_2883 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2883 SM00091 PAS domain dqs_2883 SM00387 Histidine kinase-like ATPases dqs_2884 SM00421 helix_turn_helix, Lux Regulon dqs_2884 SM00448 cheY-homologous receiver domain dqs_2889 SM00450 Rhodanese Homology Domain dqs_2891 SM00363 S4 RNA-binding domain dqs_2903 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_2903 SM00387 Histidine kinase-like ATPases dqs_2903 SM00388 His Kinase A (phosphoacceptor) domain dqs_2905 SM00382 ATPases associated with a variety of cellular activities dqs_2905 SM00448 cheY-homologous receiver domain dqs_2906 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_2915 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain dqs_2920 SM00382 ATPases associated with a variety of cellular activities dqs_2927 SM00852 Probable molybdopterin binding domain dqs_2933 SM00855 Phosphoglycerate mutase family dqs_2934 SM00387 Histidine kinase-like ATPases dqs_2934 SM00388 His Kinase A (phosphoacceptor) domain dqs_2935 SM00448 cheY-homologous receiver domain dqs_2935 SM00862 Transcriptional regulatory protein, C terminal dqs_2936 SM00893 Electron transfer flavoprotein domain dqs_2937 SM00893 Electron transfer flavoprotein domain dqs_2945 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_2945 SM00245 tail specific protease dqs_2947 SM00855 Phosphoglycerate mutase family dqs_2948 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor dqs_2949 SM00450 Rhodanese Homology Domain dqs_2956 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_2956 SM00876 Biotin and Thiamin Synthesis associated domain dqs_2960 SM01004 Delta-aminolevulinic acid dehydratase dqs_2964 SM00852 Probable molybdopterin binding domain dqs_2968 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_2968 SM00091 PAS domain dqs_2968 SM00267 diguanylate cyclase dqs_2975 SM00861 Transketolase, pyrimidine binding domain dqs_2976 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain dqs_2983 SM00564 beta-propeller repeat dqs_2985 SM00382 ATPases associated with a variety of cellular activities dqs_2988 SM00267 diguanylate cyclase dqs_2999 SM00327 von Willebrand factor (vWF) type A domain dqs_3003 SM00327 von Willebrand factor (vWF) type A domain dqs_3005 SM00091 PAS domain dqs_3005 SM00267 diguanylate cyclase dqs_3009 SM00867 YceI-like domain dqs_3010 SM00867 YceI-like domain dqs_3013 SM00953 dqs_3013 dqs_3019 SM00052 Putative diguanylate phosphodiesterase dqs_3019 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_3019 SM00091 PAS domain dqs_3019 SM00267 diguanylate cyclase dqs_3022 SM00419 helix_turn_helix, cAMP Regulatory protein dqs_3024 SM00650 Ribosomal RNA adenine dimethylases dqs_3028 SM00587 ZnF_C4 abd HLH domain containing kinases domain dqs_3030 SM01011 Aminopeptidase P, N-terminal domain dqs_3034 SM00798 AICARFT/IMPCHase bienzyme dqs_3034 SM00851 MGS-like domain dqs_3035 SM01209 dqs_3035 dqs_3035 SM01210 dqs_3035 dqs_3050 SM00382 ATPases associated with a variety of cellular activities dqs_3063 SM00382 ATPases associated with a variety of cellular activities dqs_3070 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain dqs_3072 SM00382 ATPases associated with a variety of cellular activities dqs_3085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3085 SM00387 Histidine kinase-like ATPases dqs_3085 SM00388 His Kinase A (phosphoacceptor) domain dqs_3086 SM00448 cheY-homologous receiver domain dqs_3086 SM00862 Transcriptional regulatory protein, C terminal dqs_3091 SM00746 metallochaperone-like domain dqs_3104 SM01049 dqs_3104 dqs_3105 SM00421 helix_turn_helix, Lux Regulon dqs_3105 SM00448 cheY-homologous receiver domain dqs_3106 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3107 SM00564 beta-propeller repeat dqs_3110 SM00564 beta-propeller repeat dqs_3112 SM00849 Metallo-beta-lactamase superfamily dqs_3114 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3114 SM00387 Histidine kinase-like ATPases dqs_3115 SM00421 helix_turn_helix, Lux Regulon dqs_3115 SM00448 cheY-homologous receiver domain dqs_3116 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_3116 SM00897 FIST N domain dqs_3116 SM01204 dqs_3116 dqs_3121 SM00248 ankyrin repeats dqs_3141 SM00893 Electron transfer flavoprotein domain dqs_3142 SM00893 Electron transfer flavoprotein domain dqs_3145 SM00530 Helix-turn-helix XRE-family like proteins dqs_3146 SM01230 dqs_3146 dqs_3150 SM00938 Nitrogen regulatory protein P-II dqs_3154 SM00342 helix_turn_helix, arabinose operon control protein dqs_3157 SM00564 beta-propeller repeat dqs_3166 SM00382 ATPases associated with a variety of cellular activities dqs_3172 SM00926 Molybdopterin oxidoreductase Fe4S4 domain dqs_3173 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_3176 SM00829 Enoylreductase dqs_3180 SM00382 ATPases associated with a variety of cellular activities dqs_3181 SM00382 ATPases associated with a variety of cellular activities dqs_3189 SM00530 Helix-turn-helix XRE-family like proteins dqs_3195 SM00052 Putative diguanylate phosphodiesterase dqs_3195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_3195 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_3195 SM00091 PAS domain dqs_3195 SM00267 diguanylate cyclase dqs_3198 SM00344 helix_turn_helix ASNC type dqs_3202 SM00878 Biotin carboxylase C-terminal domain dqs_3217 SM00342 helix_turn_helix, arabinose operon control protein dqs_3219 SM00100 Cyclic nucleotide-monophosphate binding domain dqs_3219 SM00419 helix_turn_helix, cAMP Regulatory protein dqs_3228 SM00327 von Willebrand factor (vWF) type A domain dqs_3229 SM00100 Cyclic nucleotide-monophosphate binding domain dqs_3229 SM00419 helix_turn_helix, cAMP Regulatory protein dqs_3233 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_3240 SM00382 ATPases associated with a variety of cellular activities dqs_3241 SM00710 Parallel beta-helix repeats dqs_3241 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses dqs_3243 SM00900 dqs_3243 dqs_3258 SM00853 MutL C terminal dimerisation domain dqs_3258 SM01340 dqs_3258 dqs_3278 SM00116 Domain in cystathionine beta-synthase and other proteins. dqs_3281 SM00831 Cation transporter/ATPase, N-terminus dqs_3290 SM00448 cheY-homologous receiver domain dqs_3290 SM00862 Transcriptional regulatory protein, C terminal dqs_3291 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3291 SM00387 Histidine kinase-like ATPases dqs_3291 SM00388 His Kinase A (phosphoacceptor) domain dqs_3294 SM00917 LeuA allosteric (dimerisation) domain dqs_3302 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase dqs_3312 SM00267 diguanylate cyclase dqs_3312 SM00448 cheY-homologous receiver domain dqs_3313 SM00829 Enoylreductase dqs_3317 SM00382 ATPases associated with a variety of cellular activities dqs_3321 SM00671 Sel1-like repeats. dqs_3322 SM00984 UDP binding domain dqs_3323 SM00028 Tetratricopeptide repeats dqs_3324 SM00382 ATPases associated with a variety of cellular activities dqs_3324 SM00448 cheY-homologous receiver domain dqs_3325 SM00387 Histidine kinase-like ATPases dqs_3345 SM00481 DNA polymerase alpha chain like domain dqs_3346 SM00829 Enoylreductase dqs_3348 SM00919 Malic enzyme, NAD binding domain dqs_3348 SM01274 dqs_3348 dqs_3358 SM00528 Domain in histone-like proteins of HNS family dqs_3359 SM00905 Dihydroneopterin aldolase dqs_3360 SM01207 dqs_3360 dqs_3363 SM00400 zinc finger dqs_3363 SM00493 dqs_3363 dqs_3363 SM00766 DNA primase DnaG DnaB-binding dqs_3367 SM00852 Probable molybdopterin binding domain dqs_3369 SM00382 ATPases associated with a variety of cellular activities dqs_3369 SM00962 SRP54-type protein, GTPase domain dqs_3369 SM00963 SRP54-type protein, helical bundle domain dqs_3371 SM00382 ATPases associated with a variety of cellular activities dqs_3374 SM00834 Putative regulatory protein dqs_3377 SM00448 cheY-homologous receiver domain dqs_3408 SM00984 UDP binding domain dqs_3418 SM00382 ATPases associated with a variety of cellular activities dqs_3425 SM00382 ATPases associated with a variety of cellular activities dqs_3427 SM00849 Metallo-beta-lactamase superfamily dqs_3427 SM01027 Beta-Casp domain dqs_3446 SM00422 helix_turn_helix, mercury resistance dqs_3455 SM00829 Enoylreductase dqs_3456 SM00341 Helicase and RNase D C-terminal dqs_3456 SM00487 DEAD-like helicases superfamily dqs_3456 SM00490 helicase superfamily c-terminal domain dqs_3456 SM00956 dqs_3456 dqs_3466 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. dqs_3466 SM00382 ATPases associated with a variety of cellular activities dqs_3467 SM00849 Metallo-beta-lactamase superfamily dqs_3468 SM00240 Forkhead associated domain dqs_3469 SM00331 Sigma factor PP2C-like phosphatases dqs_3469 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain dqs_3470 SM00881 CoA binding domain dqs_3475 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_3487 SM00644 dqs_3487 dqs_3489 SM00028 Tetratricopeptide repeats dqs_3490 SM00382 ATPases associated with a variety of cellular activities dqs_3495 SM00382 ATPases associated with a variety of cellular activities dqs_3495 SM00448 cheY-homologous receiver domain dqs_3496 SM00387 Histidine kinase-like ATPases dqs_3496 SM00388 His Kinase A (phosphoacceptor) domain dqs_3500 SM01007 Class II Aldolase and Adducin N-terminal domain dqs_3518 SM00849 Metallo-beta-lactamase superfamily dqs_3520 SM00052 Putative diguanylate phosphodiesterase dqs_3520 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_3520 SM00091 PAS domain dqs_3520 SM00267 diguanylate cyclase dqs_3520 SM00448 cheY-homologous receiver domain dqs_3521 SM00448 cheY-homologous receiver domain dqs_3522 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_3522 SM00091 PAS domain dqs_3522 SM00387 Histidine kinase-like ATPases dqs_3522 SM00388 His Kinase A (phosphoacceptor) domain dqs_3530 SM00662 RNA polymerases D dqs_3531 SM00363 S4 RNA-binding domain dqs_3531 SM01390 dqs_3531 dqs_3535 SM00316 Ribosomal protein S1-like RNA-binding domain dqs_3545 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. dqs_3546 SM01374 dqs_3546 dqs_3550 SM00322 K homology RNA-binding domain dqs_3553 SM01382 dqs_3553 dqs_3553 SM01383 dqs_3553 dqs_3557 SM01403 dqs_3557 dqs_3559 SM00838 Elongation factor G C-terminus dqs_3559 SM00889 Elongation factor G, domain IV dqs_3562 SM00663 RNA polymerase I subunit A N-terminus dqs_3567 SM00649 Ribosomal protein L11/L12 dqs_3568 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. dqs_3568 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. dqs_3579 SM00421 helix_turn_helix, Lux Regulon dqs_3579 SM00448 cheY-homologous receiver domain dqs_3581 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3581 SM00387 Histidine kinase-like ATPases dqs_3581 SM00388 His Kinase A (phosphoacceptor) domain dqs_3581 SM00448 cheY-homologous receiver domain dqs_3585 SM00382 ATPases associated with a variety of cellular activities dqs_3589 SM00382 ATPases associated with a variety of cellular activities dqs_3596 SM00448 cheY-homologous receiver domain dqs_3597 SM00448 cheY-homologous receiver domain dqs_3598 SM00260 Two component signalling adaptor domain dqs_3599 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_3600 SM00073 Histidine Phosphotransfer domain dqs_3600 SM00260 Two component signalling adaptor domain dqs_3600 SM00387 Histidine kinase-like ATPases dqs_3600 SM00448 cheY-homologous receiver domain dqs_3600 SM01231 dqs_3600 dqs_3603 SM00732 Likely ribonuclease with RNase H fold. dqs_3607 SM01152 dqs_3607 dqs_3611 SM00382 ATPases associated with a variety of cellular activities dqs_3618 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_3618 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3620 SM00981 dqs_3620 dqs_3625 SM00926 Molybdopterin oxidoreductase Fe4S4 domain dqs_3635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3635 SM00387 Histidine kinase-like ATPases dqs_3635 SM00388 His Kinase A (phosphoacceptor) domain dqs_3636 SM00382 ATPases associated with a variety of cellular activities dqs_3636 SM00448 cheY-homologous receiver domain dqs_3641 SM00387 Histidine kinase-like ATPases dqs_3642 SM00052 Putative diguanylate phosphodiesterase dqs_3642 SM00091 PAS domain dqs_3642 SM00267 diguanylate cyclase dqs_3642 SM00448 cheY-homologous receiver domain dqs_3646 SM00988 UreE urease accessory protein, N-terminal domain dqs_3656 SM00382 ATPases associated with a variety of cellular activities dqs_3658 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor dqs_3665 SM00487 DEAD-like helicases superfamily dqs_3665 SM00490 helicase superfamily c-terminal domain dqs_3666 SM00917 LeuA allosteric (dimerisation) domain dqs_3669 SM00849 Metallo-beta-lactamase superfamily dqs_3670 SM00052 Putative diguanylate phosphodiesterase dqs_3670 SM00267 diguanylate cyclase dqs_3683 SM00345 helix_turn_helix gluconate operon transcriptional repressor dqs_3696 SM00382 ATPases associated with a variety of cellular activities dqs_3705 SM00855 Phosphoglycerate mutase family dqs_3715 SM00382 ATPases associated with a variety of cellular activities dqs_3739 SM00382 ATPases associated with a variety of cellular activities dqs_3743 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs dqs_3743 SM00474 3'-5' exonuclease dqs_3743 SM00475 5'-3' exonuclease dqs_3743 SM00482 DNA polymerase A domain dqs_3746 SM00986 Uracil DNA glycosylase superfamily dqs_3746 SM00987 UreE urease accessory protein, C-terminal domain dqs_3755 SM00316 Ribosomal protein S1-like RNA-binding domain dqs_3758 SM00448 cheY-homologous receiver domain dqs_3758 SM00862 Transcriptional regulatory protein, C terminal dqs_3759 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3759 SM00387 Histidine kinase-like ATPases dqs_3759 SM00388 His Kinase A (phosphoacceptor) domain dqs_3760 SM00054 EF-hand, calcium binding motif dqs_3763 SM00240 Forkhead associated domain dqs_3766 SM00829 Enoylreductase dqs_3770 SM00671 Sel1-like repeats. dqs_3777 SM00382 ATPases associated with a variety of cellular activities dqs_3788 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_3791 SM00965 Secretin and TonB N terminus short domain dqs_3795 SM00842 Cell division protein FtsA dqs_3797 SM01219 dqs_3797 dqs_3804 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family dqs_3806 SM00926 Molybdopterin oxidoreductase Fe4S4 domain dqs_3810 SM00052 Putative diguanylate phosphodiesterase dqs_3810 SM00267 diguanylate cyclase dqs_3810 SM00448 cheY-homologous receiver domain dqs_3811 SM00387 Histidine kinase-like ATPases dqs_3811 SM00388 His Kinase A (phosphoacceptor) domain dqs_3817 SM00448 cheY-homologous receiver domain dqs_3817 SM00862 Transcriptional regulatory protein, C terminal dqs_3818 SM00387 Histidine kinase-like ATPases dqs_3818 SM00388 His Kinase A (phosphoacceptor) domain dqs_3819 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. dqs_3827 SM00849 Metallo-beta-lactamase superfamily dqs_3828 SM00346 helix_turn_helix isocitrate lyase regulation dqs_3830 SM00073 Histidine Phosphotransfer domain dqs_3830 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_3830 SM00091 PAS domain dqs_3830 SM00387 Histidine kinase-like ATPases dqs_3830 SM00388 His Kinase A (phosphoacceptor) domain dqs_3830 SM00448 cheY-homologous receiver domain dqs_3831 SM00448 cheY-homologous receiver domain dqs_3831 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_3836 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_3836 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_3850 SM00342 helix_turn_helix, arabinose operon control protein dqs_3877 SM01018 B12 binding domain dqs_3884 SM00382 ATPases associated with a variety of cellular activities dqs_3885 SM00382 ATPases associated with a variety of cellular activities dqs_3887 SM00382 ATPases associated with a variety of cellular activities dqs_3890 SM00938 Nitrogen regulatory protein P-II dqs_3895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_3896 SM00382 ATPases associated with a variety of cellular activities dqs_3902 SM00342 helix_turn_helix, arabinose operon control protein dqs_3919 SM01060 dqs_3919 dqs_3921 SM00257 Lysin motif dqs_3925 SM00220 Serine/Threonine protein kinases, catalytic domain dqs_3928 SM00267 diguanylate cyclase dqs_3930 SM00382 ATPases associated with a variety of cellular activities dqs_3941 SM00530 Helix-turn-helix XRE-family like proteins dqs_3943 SM00382 ATPases associated with a variety of cellular activities dqs_3957 SM00382 ATPases associated with a variety of cellular activities dqs_3957 SM00448 cheY-homologous receiver domain dqs_3961 SM00267 diguanylate cyclase dqs_3962 SM00091 PAS domain dqs_3962 SM00387 Histidine kinase-like ATPases dqs_3962 SM00388 His Kinase A (phosphoacceptor) domain dqs_3963 SM00903 Flavin reductase like domain dqs_3964 SM00478 endonuclease III dqs_3965 SM00464 Found in ATP-dependent protease La (LON) dqs_3968 SM00342 helix_turn_helix, arabinose operon control protein dqs_3975 SM00849 Metallo-beta-lactamase superfamily dqs_3978 SM00382 ATPases associated with a variety of cellular activities dqs_3980 SM00420 helix_turn_helix, Deoxyribose operon repressor dqs_3980 SM01134 dqs_3980 dqs_3986 SM00382 ATPases associated with a variety of cellular activities dqs_3993 SM00052 Putative diguanylate phosphodiesterase dqs_3993 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) dqs_3993 SM00091 PAS domain dqs_3993 SM00267 diguanylate cyclase dqs_3994 SM00382 ATPases associated with a variety of cellular activities dqs_3999 SM00098 Alkaline phosphatase homologues dqs_4004 SM01329 dqs_4004 dqs_4009 SM00564 beta-propeller repeat dqs_4012 SM00861 Transketolase, pyrimidine binding domain dqs_4019 SM00382 ATPases associated with a variety of cellular activities dqs_4028 SM00240 Forkhead associated domain dqs_4029 SM00331 Sigma factor PP2C-like phosphatases dqs_4029 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain dqs_4032 SM00219 Tyrosine kinase, catalytic domain dqs_4047 SM00382 ATPases associated with a variety of cellular activities dqs_4047 SM01086 C-terminal, D2-small domain, of ClpB protein dqs_4051 SM00028 Tetratricopeptide repeats dqs_4052 SM00220 Serine/Threonine protein kinases, catalytic domain dqs_4053 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_4055 SM00825 Beta-ketoacyl synthase dqs_4058 SM00822 dqs_4058 dqs_4060 SM00859 Semialdehyde dehydrogenase, NAD binding domain dqs_4062 SM00563 Phosphate acyltransferases dqs_4067 SM00344 helix_turn_helix ASNC type dqs_4069 SM01005 Alanine racemase, C-terminal domain dqs_4071 SM00028 Tetratricopeptide repeats dqs_4079 SM00382 ATPases associated with a variety of cellular activities dqs_4080 SM00091 PAS domain dqs_4080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). dqs_4085 SM00926 Molybdopterin oxidoreductase Fe4S4 domain dqs_4088 SM00387 Histidine kinase-like ATPases dqs_4088 SM00388 His Kinase A (phosphoacceptor) domain dqs_4088 SM00448 cheY-homologous receiver domain dqs_4089 SM00448 cheY-homologous receiver domain dqs_4090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_4090 SM00387 Histidine kinase-like ATPases dqs_4090 SM00388 His Kinase A (phosphoacceptor) domain dqs_4091 SM00479 dqs_4091 dqs_4094 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. dqs_4094 SM00954 Region found in RelA / SpoT proteins dqs_4095 SM01409 dqs_4095 dqs_4096 SM00072 Guanylate kinase homologues. dqs_4100 SM00481 DNA polymerase alpha chain like domain dqs_4102 SM00422 helix_turn_helix, mercury resistance dqs_4104 SM00220 Serine/Threonine protein kinases, catalytic domain dqs_4105 SM00331 Sigma factor PP2C-like phosphatases dqs_4105 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain dqs_4108 SM00729 Elongator protein 3, MiaB family, Radical SAM dqs_4120 SM00947 Carbonic anhydrase dqs_4121 SM00487 DEAD-like helicases superfamily dqs_4121 SM00490 helicase superfamily c-terminal domain dqs_4125 SM00448 cheY-homologous receiver domain dqs_4126 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain dqs_4126 SM00387 Histidine kinase-like ATPases dqs_4126 SM00388 His Kinase A (phosphoacceptor) domain dqs_4133 SM01234 dqs_4133