dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 PIRSF PIRSF004749 1 176 2.0E-45 T 11-10-2018 IPR023635 Peptide deformylase dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 PRINTS PR01576 Peptide deformylase signature 109 127 9.3E-31 T 11-10-2018 IPR023635 Peptide deformylase dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 PRINTS PR01576 Peptide deformylase signature 97 108 9.3E-31 T 11-10-2018 IPR023635 Peptide deformylase dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 PRINTS PR01576 Peptide deformylase signature 33 62 9.3E-31 T 11-10-2018 IPR023635 Peptide deformylase dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 PRINTS PR01576 Peptide deformylase signature 128 157 9.3E-31 T 11-10-2018 IPR023635 Peptide deformylase dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 Hamap MF_00163 Peptide deformylase [def]. 1 170 27.377 T 11-10-2018 IPR023635 Peptide deformylase dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 Gene3D G3DSA:3.90.45.10 1 176 1.2E-63 T 11-10-2018 IPR036821 Peptide deformylase superfamily dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 Pfam PF01327 Polypeptide deformylase 3 158 1.9E-46 T 11-10-2018 IPR023635 Peptide deformylase dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 3 159 2.7E-34 T 11-10-2018 IPR023635 Peptide deformylase dqs_3753 3e49fae4bba3babf6756d52b95640d8c 177 SUPERFAMILY SSF56420 1 166 4.58E-59 T 11-10-2018 IPR036821 Peptide deformylase superfamily dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 Pfam PF00694 Aconitase C-terminal domain 699 828 1.4E-39 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 SUPERFAMILY SSF53732 16 633 1.44E-211 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 ProSitePatterns PS00450 Aconitase family signature 1. 434 450 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 ProSitePatterns PS01244 Aconitase family signature 2. 500 513 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 Pfam PF00330 Aconitase family (aconitate hydratase) 84 569 9.4E-175 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 Gene3D G3DSA:3.30.499.10 376 597 3.7E-93 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 Gene3D G3DSA:3.20.19.10 660 903 5.8E-99 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 438 449 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 281 294 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 295 308 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 176 184 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 219 234 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 205 218 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 152 165 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 375 389 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 PRINTS PR00415 Aconitase family signature 500 513 1.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 SUPERFAMILY SSF52016 642 902 9.22E-81 T 11-10-2018 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 Gene3D G3DSA:1.10.1440.20 598 658 6.4E-12 T 11-10-2018 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 Gene3D G3DSA:3.30.499.20 11 375 4.1E-154 T 11-10-2018 dqs_1656 7861d2af342de719cabb4a752a42a1ed 903 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 26 902 0.0 T 11-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 SMART SM00471 442 589 3.2E-5 T 11-10-2018 IPR003607 HD/PDEase domain dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 34 840 2.0E-244 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 861 311.603 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 PIRSF PIRSF006288 7 861 0.0 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 Gene3D G3DSA:3.30.70.260 789 861 1.2E-8 T 11-10-2018 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 SUPERFAMILY SSF81301 27 164 2.39E-19 T 11-10-2018 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 Pfam PF01966 HD domain 447 549 1.1E-11 T 11-10-2018 IPR006674 HD domain dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 Pfam PF01842 ACT domain 792 833 6.2E-7 T 11-10-2018 IPR002912 ACT domain dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 SUPERFAMILY SSF55021 789 845 3.21E-10 T 11-10-2018 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 Pfam PF01909 Nucleotidyltransferase domain 65 97 2.2E-4 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 SUPERFAMILY SSF109604 413 537 6.59E-16 T 11-10-2018 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 SUPERFAMILY SSF81593 191 305 2.98E-9 T 11-10-2018 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 Pfam PF08335 GlnD PII-uridylyltransferase 171 309 1.4E-36 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 SUPERFAMILY SSF55021 682 742 1.83E-8 T 11-10-2018 dqs_2066 4a3c92fccb454984c399aa70a0bf9a63 861 Gene3D G3DSA:1.10.3210.10 432 573 1.2E-9 T 11-10-2018 dqs_2120 ac41f0e1b221028c7778b620266f6ac1 333 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 282 327 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_2120 ac41f0e1b221028c7778b620266f6ac1 333 Gene3D G3DSA:1.10.10.60 229 333 5.3E-36 T 11-10-2018 dqs_2120 ac41f0e1b221028c7778b620266f6ac1 333 SUPERFAMILY SSF46689 230 279 1.0E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2120 ac41f0e1b221028c7778b620266f6ac1 333 Pfam PF14525 AraC-binding-like domain 30 208 7.6E-46 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like dqs_2120 ac41f0e1b221028c7778b620266f6ac1 333 SUPERFAMILY SSF46689 282 330 8.24E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2120 ac41f0e1b221028c7778b620266f6ac1 333 SMART SM00342 245 331 3.0E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2120 ac41f0e1b221028c7778b620266f6ac1 333 Pfam PF12833 Helix-turn-helix domain 251 333 3.6E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 Gene3D G3DSA:3.40.50.620 2 182 3.5E-55 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 272 4.7E-35 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 Gene3D G3DSA:3.40.50.1220 183 308 4.9E-57 T 11-10-2018 dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 Pfam PF01012 Electron transfer flavoprotein domain 4 166 7.4E-40 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 SUPERFAMILY SSF52467 188 307 3.65E-47 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 SUPERFAMILY SSF52402 3 183 1.26E-55 T 11-10-2018 dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 PIRSF PIRSF000089 1 308 1.9E-108 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 dqs_2076 23afaa244cc608789d706b0a955b6c1e 308 SMART SM00893 3 181 6.2E-55 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 Gene3D G3DSA:3.40.50.620 2 182 3.5E-55 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 272 4.7E-35 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 Gene3D G3DSA:3.40.50.1220 183 308 4.9E-57 T 11-10-2018 dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 Pfam PF01012 Electron transfer flavoprotein domain 4 166 7.4E-40 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 SUPERFAMILY SSF52467 188 307 3.65E-47 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 SUPERFAMILY SSF52402 3 183 1.26E-55 T 11-10-2018 dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 PIRSF PIRSF000089 1 308 1.9E-108 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 dqs_2644 23afaa244cc608789d706b0a955b6c1e 308 SMART SM00893 3 181 6.2E-55 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 275 288 - T 11-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 Pfam PF00231 ATP synthase 5 288 5.4E-94 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 289 1.5E-103 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 PRINTS PR00126 ATP synthase gamma subunit signature 75 94 3.4E-36 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 PRINTS PR00126 ATP synthase gamma subunit signature 267 288 3.4E-36 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 PRINTS PR00126 ATP synthase gamma subunit signature 169 186 3.4E-36 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 PRINTS PR00126 ATP synthase gamma subunit signature 236 255 3.4E-36 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 SUPERFAMILY SSF52943 2 289 1.07E-91 T 11-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 289 35.946 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 Gene3D G3DSA:3.40.1380.10 62 208 7.0E-103 T 11-10-2018 dqs_0167 1329e7be4a139a225846c45b50b2be51 289 Gene3D G3DSA:1.10.287.80 6 285 7.0E-103 T 11-10-2018 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Gene3D G3DSA:3.30.450.20 10 138 2.1E-9 T 11-10-2018 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SMART SM00448 561 673 9.9E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Gene3D G3DSA:3.40.50.2300 560 683 1.1E-23 T 11-10-2018 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Pfam PF12860 PAS fold 24 137 1.2E-37 T 11-10-2018 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SUPERFAMILY SSF55874 368 541 3.01E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 483 2.0E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 537 2.0E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 500 518 2.0E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 497 2.0E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 181 304 5.8E-17 T 11-10-2018 IPR000014 PAS domain dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SUPERFAMILY SSF52172 562 678 1.11E-23 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SMART SM00387 418 540 1.1E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 419 539 1.3E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SUPERFAMILY SSF55785 178 295 1.82E-21 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SUPERFAMILY SSF55785 30 142 3.56E-5 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Gene3D G3DSA:1.10.287.130 309 375 1.7E-18 T 11-10-2018 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Gene3D G3DSA:3.30.565.10 379 542 1.7E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SMART SM00086 255 297 7.5E-4 T 11-10-2018 IPR001610 PAC motif dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Pfam PF00072 Response regulator receiver domain 563 672 1.7E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SUPERFAMILY SSF47384 306 374 2.16E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Pfam PF08448 PAS fold 190 298 2.1E-18 T 11-10-2018 IPR013656 PAS fold-4 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SMART SM00091 18 84 37.0 T 11-10-2018 IPR000014 PAS domain dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SMART SM00091 184 250 3.7E-8 T 11-10-2018 IPR000014 PAS domain dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Pfam PF00512 His Kinase A (phospho-acceptor) domain 313 375 2.2E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 Gene3D G3DSA:3.30.450.20 174 308 1.8E-26 T 11-10-2018 dqs_0764 72dbfeb6654e4f67f7266042c04589f3 685 SMART SM00388 312 377 4.7E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2204 236f64299d6ac4bf3525a77d0897bd24 511 Pfam PF04293 SpoVR like protein 16 447 6.9E-176 T 11-10-2018 IPR007390 Sporulation stage V, protein R dqs_3659 577073ea59acb4c2c91fb65ed42ec7f7 184 Pfam PF12724 Flavodoxin domain 6 75 3.2E-10 T 11-10-2018 IPR026816 Flavodoxin domain dqs_3659 577073ea59acb4c2c91fb65ed42ec7f7 184 Gene3D G3DSA:3.40.50.360 1 184 4.3E-61 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_3659 577073ea59acb4c2c91fb65ed42ec7f7 184 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 dqs_3659 577073ea59acb4c2c91fb65ed42ec7f7 184 SUPERFAMILY SSF52218 1 183 2.88E-44 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1043 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 557 574 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 626 640 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 4.7E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Gene3D G3DSA:1.20.1640.10 518 1028 0.0 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 SUPERFAMILY SSF82714 182 272 1.57E-21 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 SUPERFAMILY SSF82693 570 674 1.94E-30 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 SUPERFAMILY SSF82714 728 812 6.67E-21 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Gene3D G3DSA:3.30.2090.10 726 814 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 SUPERFAMILY SSF82693 38 131 6.28E-27 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Pfam PF00873 AcrB/AcrD/AcrF family 1 1031 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 SUPERFAMILY SSF82866 296 497 6.15E-50 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 SUPERFAMILY SSF82693 677 861 8.89E-29 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Gene3D G3DSA:3.30.70.1440 674 870 0.0 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Gene3D G3DSA:3.30.70.1430 572 673 0.0 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 SUPERFAMILY SSF82866 836 1031 1.57E-43 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Gene3D G3DSA:3.30.70.1430 38 822 0.0 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 SUPERFAMILY SSF82693 135 330 1.75E-27 T 11-10-2018 dqs_0259 4e030efd2061eff8d6763dd44ea427f9 1052 Gene3D G3DSA:1.20.1640.10 8 517 0.0 T 11-10-2018 dqs_1393 985465af085981d811657f6d4c1085af 880 SUPERFAMILY SSF55073 447 604 3.4E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1393 985465af085981d811657f6d4c1085af 880 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 315 437 5.2E-21 T 11-10-2018 IPR000014 PAS domain dqs_1393 985465af085981d811657f6d4c1085af 880 PIRSF PIRSF005925 430 879 7.7E-142 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_1393 985465af085981d811657f6d4c1085af 880 PIRSF PIRSF005925 307 436 1.4E-11 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_1393 985465af085981d811657f6d4c1085af 880 SUPERFAMILY SSF141868 618 866 1.23E-91 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1393 985465af085981d811657f6d4c1085af 880 Gene3D G3DSA:3.30.70.270 441 615 1.3E-63 T 11-10-2018 dqs_1393 985465af085981d811657f6d4c1085af 880 SMART SM00086 389 431 5.7E-7 T 11-10-2018 IPR001610 PAC motif dqs_1393 985465af085981d811657f6d4c1085af 880 Pfam PF00563 EAL domain 620 854 7.5E-72 T 11-10-2018 IPR001633 EAL domain dqs_1393 985465af085981d811657f6d4c1085af 880 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 439 601 2.1E-42 T 11-10-2018 IPR000160 GGDEF domain dqs_1393 985465af085981d811657f6d4c1085af 880 Pfam PF00990 Diguanylate cyclase, GGDEF domain 442 598 4.9E-51 T 11-10-2018 IPR000160 GGDEF domain dqs_1393 985465af085981d811657f6d4c1085af 880 SMART SM00091 317 383 2.0E-6 T 11-10-2018 IPR000014 PAS domain dqs_1393 985465af085981d811657f6d4c1085af 880 Gene3D G3DSA:3.20.20.450 616 868 3.8E-103 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1393 985465af085981d811657f6d4c1085af 880 SMART SM00052 613 859 8.7E-120 T 11-10-2018 IPR001633 EAL domain dqs_1393 985465af085981d811657f6d4c1085af 880 Pfam PF13426 PAS domain 328 430 1.2E-15 T 11-10-2018 IPR000014 PAS domain dqs_1393 985465af085981d811657f6d4c1085af 880 Gene3D G3DSA:3.30.450.20 305 440 2.0E-35 T 11-10-2018 dqs_1393 985465af085981d811657f6d4c1085af 880 SUPERFAMILY SSF55785 325 428 5.23E-28 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1393 985465af085981d811657f6d4c1085af 880 SMART SM00267 431 603 3.9E-66 T 11-10-2018 IPR000160 GGDEF domain dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 Pfam PF00072 Response regulator receiver domain 4 112 3.0E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 SMART SM00448 2 112 2.0E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 SUPERFAMILY SSF46689 353 442 6.81E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 SUPERFAMILY SSF52172 1 185 2.7E-34 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 SMART SM00382 161 305 3.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 Pfam PF00158 Sigma-54 interaction domain 141 308 2.5E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 Gene3D G3DSA:1.10.8.60 312 387 7.1E-24 T 11-10-2018 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 Gene3D G3DSA:3.40.50.300 133 311 1.6E-64 T 11-10-2018 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 Gene3D G3DSA:3.40.50.2300 1 132 6.2E-26 T 11-10-2018 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 Gene3D G3DSA:1.10.10.60 399 439 2.4E-10 T 11-10-2018 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 Pfam PF02954 Bacterial regulatory protein, Fis family 401 441 1.8E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_1961 8df24e35ff1e1391f8eef3a5e96d7e73 475 SUPERFAMILY SSF52540 141 372 1.39E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3063 3f82ca4ff1ba53649f6c26e5a83f4ce8 237 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3063 3f82ca4ff1ba53649f6c26e5a83f4ce8 237 Pfam PF00005 ABC transporter 19 156 6.7E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3063 3f82ca4ff1ba53649f6c26e5a83f4ce8 237 SUPERFAMILY SSF52540 4 219 3.01E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3063 3f82ca4ff1ba53649f6c26e5a83f4ce8 237 SMART SM00382 28 215 4.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3063 3f82ca4ff1ba53649f6c26e5a83f4ce8 237 Gene3D G3DSA:3.40.50.300 4 233 7.8E-63 T 11-10-2018 dqs_3664 5ca4ebfbc0737e360f1b7fc41601d126 354 Pfam PF01435 Peptidase family M48 128 304 5.2E-10 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 Pfam PF00381 PTS HPr component phosphorylation site 4 82 7.1E-27 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 2.6E-31 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 SUPERFAMILY SSF55594 1 87 4.32E-29 T 11-10-2018 IPR035895 HPr-like superfamily dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 Gene3D G3DSA:3.30.1340.10 1 88 7.1E-31 T 11-10-2018 IPR035895 HPr-like superfamily dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 5.4E-17 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 5.4E-17 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like dqs_3932 bd579283d3b8dcfc5110bb475e40c3a5 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 5.4E-17 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like dqs_0378 732e311052bdf8788cac2835fff67f74 320 PIRSF PIRSF000441 133 308 3.3E-51 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 dqs_0378 732e311052bdf8788cac2835fff67f74 320 SUPERFAMILY SSF51161 117 303 1.25E-44 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_0378 732e311052bdf8788cac2835fff67f74 320 Gene3D G3DSA:1.10.3130.10 47 200 2.4E-45 T 11-10-2018 dqs_0378 732e311052bdf8788cac2835fff67f74 320 Gene3D G3DSA:2.160.10.10 201 316 2.1E-30 T 11-10-2018 dqs_0378 732e311052bdf8788cac2835fff67f74 320 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 260 294 2.1E-6 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_1237 5bc033ca32a96613443de81d806ba1da 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 296 1.7E-31 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 207 268 1.0E-19 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 Gene3D G3DSA:1.10.3090.10 178 422 1.5E-79 T 11-10-2018 dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 Pfam PF01743 Poly A polymerase head domain 54 180 1.2E-33 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 Pfam PF12626 Polymerase A arginine-rich C-terminus 321 438 4.5E-40 T 11-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 24 439 4.5E-146 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 18 440 35.64 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 SUPERFAMILY SSF81301 26 177 7.74E-40 T 11-10-2018 dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 Gene3D G3DSA:3.30.460.10 21 176 1.0E-56 T 11-10-2018 dqs_3272 b6980edea82cb91ad18b0cf6d0078e79 452 SUPERFAMILY SSF81891 178 410 1.57E-50 T 11-10-2018 dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 Pfam PF00072 Response regulator receiver domain 186 309 6.5E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 Gene3D G3DSA:3.40.50.2300 179 321 1.0E-22 T 11-10-2018 dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 SUPERFAMILY SSF50341 16 163 1.96E-30 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 Gene3D G3DSA:2.30.30.40 36 154 2.1E-29 T 11-10-2018 dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 PIRSF PIRSF002867 1 317 1.2E-102 T 11-10-2018 IPR024181 Chemotaxis response regulator CheV dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 Pfam PF01584 CheW-like domain 22 162 1.1E-34 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 SMART SM00448 184 309 1.3E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 SUPERFAMILY SSF52172 183 317 4.41E-23 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 Gene3D G3DSA:2.40.50.180 45 160 2.1E-29 T 11-10-2018 dqs_1581 0c4b8c86a32dac640bcbc5b074a3feec 321 SMART SM00260 19 160 3.9E-26 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 398 48.366 T 11-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 5 397 2.9E-120 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 Gene3D G3DSA:3.40.50.620 5 217 2.4E-74 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2891 a3bddfbf73a71d96999f34408857999b 399 Pfam PF01479 S4 domain 341 384 2.6E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 Pfam PF00579 tRNA synthetases class I (W and Y) 31 317 1.1E-76 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 SUPERFAMILY SSF52374 7 316 1.31E-99 T 11-10-2018 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 Gene3D G3DSA:3.10.290.10 327 397 3.5E-16 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 SUPERFAMILY SSF55174 320 398 4.06E-18 T 11-10-2018 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 5.0E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 5.0E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 5.0E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 5.0E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 SMART SM00363 337 399 2.6E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_2891 a3bddfbf73a71d96999f34408857999b 399 Gene3D G3DSA:1.10.240.10 218 326 3.0E-30 T 11-10-2018 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 SUPERFAMILY SSF47794 428 489 1.26E-13 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Gene3D G3DSA:3.30.300.20 279 348 7.7E-25 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 343 7.4E-123 T 11-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 SUPERFAMILY SSF54814 280 343 3.66E-15 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Pfam PF00575 S1 RNA binding domain 139 196 2.6E-4 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Gene3D G3DSA:2.40.50.140 139 199 1.9E-20 T 11-10-2018 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 439 488 2.9E-15 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 366 414 9.4E-19 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 SUPERFAMILY SSF47794 356 417 3.92E-16 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 SUPERFAMILY SSF50249 134 200 2.12E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Pfam PF14520 Helix-hairpin-helix domain 431 485 5.5E-9 T 11-10-2018 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Pfam PF08529 NusA N-terminal domain 4 126 1.7E-37 T 11-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Gene3D G3DSA:3.30.1480.10 1 131 4.0E-42 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Gene3D G3DSA:1.10.150.20 355 422 8.9E-28 T 11-10-2018 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Pfam PF13184 NusA-like KH domain 231 298 6.7E-25 T 11-10-2018 IPR025249 KH domain, NusA-like GO:0003723 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 SMART SM00316 135 201 2.3E-6 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 SUPERFAMILY SSF69705 1 128 1.57E-39 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Gene3D G3DSA:3.30.300.20 200 278 1.2E-30 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Gene3D G3DSA:1.10.150.20 430 488 3.0E-21 T 11-10-2018 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 411 29.457 T 11-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 dqs_2240 04fa863ddec314e964f4e0a384e8caac 491 SUPERFAMILY SSF54814 201 278 9.16E-29 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 Pfam PF00563 EAL domain 549 782 8.9E-68 T 11-10-2018 IPR001633 EAL domain dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 SUPERFAMILY SSF55781 45 172 2.18E-7 T 11-10-2018 dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 SUPERFAMILY SSF55781 209 365 5.67E-19 T 11-10-2018 dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 Gene3D G3DSA:3.30.70.270 368 533 2.4E-42 T 11-10-2018 dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 SMART SM00267 362 533 1.3E-39 T 11-10-2018 IPR000160 GGDEF domain dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 Pfam PF00990 Diguanylate cyclase, GGDEF domain 373 527 6.3E-34 T 11-10-2018 IPR000160 GGDEF domain dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 SUPERFAMILY SSF55073 378 530 4.71E-38 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 Pfam PF13185 GAF domain 208 354 1.8E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 Gene3D G3DSA:3.20.20.450 543 794 8.6E-95 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 370 528 1.6E-27 T 11-10-2018 IPR000160 GGDEF domain dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 SUPERFAMILY SSF141868 548 794 6.54E-85 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 Gene3D G3DSA:3.30.450.40 22 176 4.4E-8 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 SMART SM00052 542 787 1.7E-107 T 11-10-2018 IPR001633 EAL domain dqs_1658 b4f1a8255d0cb37e5990d521a6a19062 799 Gene3D G3DSA:3.30.450.40 181 367 1.9E-25 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 SMART SM00220 9 270 5.0E-48 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 Gene3D G3DSA:3.30.200.20 1 92 4.1E-21 T 11-10-2018 dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 PIRSF PIRSF000654 18 263 8.3E-25 T 11-10-2018 dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 15 38 - T 11-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 SMART SM00100 299 414 1.2E-17 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 Pfam PF00069 Protein kinase domain 9 260 2.2E-44 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 Gene3D G3DSA:1.10.510.10 94 284 1.5E-41 T 11-10-2018 dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 SUPERFAMILY SSF51206 291 414 5.63E-22 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 Pfam PF00027 Cyclic nucleotide-binding domain 320 397 1.6E-13 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 362 381 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 132 144 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 SUPERFAMILY SSF56112 6 269 2.7E-67 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_1089 621dc88d093a2a084e6ba8cc8a09c11c 428 Gene3D G3DSA:2.60.120.10 291 428 4.9E-24 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_0452 98212208b670078e824301e22388a921 245 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 233 2.9E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_0452 98212208b670078e824301e22388a921 245 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 24 126 1.9E-18 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 dqs_0452 98212208b670078e824301e22388a921 245 Gene3D G3DSA:1.10.3720.10 14 234 3.2E-44 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0452 98212208b670078e824301e22388a921 245 SUPERFAMILY SSF161098 23 218 5.23E-37 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 Gene3D G3DSA:1.10.3210.10 15 275 8.4E-63 T 11-10-2018 dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 SMART SM00448 335 448 4.5E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 Pfam PF08668 HDOD domain 18 211 4.0E-40 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 Gene3D G3DSA:3.30.70.270 472 648 6.3E-57 T 11-10-2018 dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 SUPERFAMILY SSF109604 12 283 1.22E-48 T 11-10-2018 dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 482 645 1.8E-51 T 11-10-2018 IPR000160 GGDEF domain dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 Pfam PF00990 Diguanylate cyclase, GGDEF domain 486 642 4.2E-45 T 11-10-2018 IPR000160 GGDEF domain dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 SUPERFAMILY SSF52172 334 481 4.98E-37 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 SMART SM00267 475 647 1.4E-61 T 11-10-2018 IPR000160 GGDEF domain dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 SUPERFAMILY SSF55073 491 645 4.71E-50 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 Gene3D G3DSA:3.40.50.2300 321 470 1.0E-33 T 11-10-2018 dqs_1568 b4dbb53c325b9a2ee4eeeee55bfa8e34 656 Pfam PF00072 Response regulator receiver domain 337 448 2.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3097 86f325fc42085002313d603d9ce2d0b6 188 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 166 3.4E-22 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_3097 86f325fc42085002313d603d9ce2d0b6 188 SUPERFAMILY SSF88946 8 92 3.66E-17 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_3097 86f325fc42085002313d603d9ce2d0b6 188 Pfam PF04542 Sigma-70 region 2 17 76 1.5E-12 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_3097 86f325fc42085002313d603d9ce2d0b6 188 SUPERFAMILY SSF88659 104 167 5.79E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_3097 86f325fc42085002313d603d9ce2d0b6 188 Gene3D G3DSA:1.10.1740.10 2 75 3.0E-16 T 11-10-2018 dqs_3097 86f325fc42085002313d603d9ce2d0b6 188 Pfam PF08281 Sigma-70, region 4 110 162 2.3E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_3097 86f325fc42085002313d603d9ce2d0b6 188 Gene3D G3DSA:1.10.10.10 106 169 2.4E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2373 9e7372e2c5b0411eefbde86585428748 288 SUPERFAMILY SSF160246 11 83 6.02E-14 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily dqs_2373 9e7372e2c5b0411eefbde86585428748 288 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 96 287 3.1E-33 T 11-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 dqs_2373 9e7372e2c5b0411eefbde86585428748 288 SUPERFAMILY SSF52540 117 287 2.63E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2373 9e7372e2c5b0411eefbde86585428748 288 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 119 172 2.6E-6 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_2373 9e7372e2c5b0411eefbde86585428748 288 TIGRFAM TIGR03029 EpsG: chain length determinant protein tyrosine kinase EpsG 15 286 3.1E-99 T 11-10-2018 IPR017479 Tyrosine-protein kinase, chain length determinant protein EpsG dqs_2373 9e7372e2c5b0411eefbde86585428748 288 Gene3D G3DSA:3.40.50.300 51 288 4.7E-50 T 11-10-2018 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SMART SM00490 830 914 3.1E-17 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 35 1113 27.168 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Gene3D G3DSA:3.40.50.300 546 785 1.0E-229 T 11-10-2018 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Gene3D G3DSA:3.40.50.300 482 993 1.0E-229 T 11-10-2018 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Gene3D G3DSA:3.40.50.11180 31 338 3.5E-111 T 11-10-2018 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Gene3D G3DSA:3.30.2060.10 135 220 3.5E-111 T 11-10-2018 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SUPERFAMILY SSF143517 998 1147 5.49E-38 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SUPERFAMILY SSF52540 527 787 2.34E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Pfam PF03461 TRCF domain 1013 1106 4.1E-27 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Pfam PF00271 Helicase conserved C-terminal domain 811 913 4.1E-16 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SUPERFAMILY SSF141259 477 552 3.4E-23 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SUPERFAMILY SSF52540 787 994 2.83E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SMART SM00487 604 794 2.1E-37 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SMART SM01058 483 580 2.3E-46 T 11-10-2018 IPR003711 CarD-like/TRCF domain dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SUPERFAMILY SSF52540 356 468 4.51E-22 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Gene3D G3DSA:3.40.50.11140 356 456 1.7E-9 T 11-10-2018 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 155 1085 0.0 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Gene3D G3DSA:2.30.30.840 487 545 1.0E-229 T 11-10-2018 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Gene3D G3DSA:3.90.1150.50 1009 1150 1.5E-38 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Pfam PF00270 DEAD/DEAH box helicase 609 766 5.0E-19 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SUPERFAMILY SSF52540 20 346 2.3E-95 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 SMART SM00982 1012 1112 4.8E-47 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 dqs_1823 60dd8dc5f4d5953bb9a4b879326e88ae 1150 Pfam PF02559 CarD-like/TRCF domain 484 579 2.8E-25 T 11-10-2018 IPR003711 CarD-like/TRCF domain dqs_3409 1129436457f1a3e14b034f62524f0ab8 403 Gene3D G3DSA:3.40.50.2000 1 215 1.8E-17 T 11-10-2018 dqs_3409 1129436457f1a3e14b034f62524f0ab8 403 Pfam PF13439 Glycosyltransferase Family 4 23 207 8.7E-12 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3409 1129436457f1a3e14b034f62524f0ab8 403 TIGRFAM TIGR03087 stp1: sugar transferase, PEP-CTERM/EpsH1 system associated 3 390 3.0E-151 T 11-10-2018 IPR017521 Sugar transferase, PEP-CTERM, Stp1 dqs_3409 1129436457f1a3e14b034f62524f0ab8 403 SUPERFAMILY SSF53756 2 388 4.32E-43 T 11-10-2018 dqs_3409 1129436457f1a3e14b034f62524f0ab8 403 Gene3D G3DSA:3.40.50.2000 216 372 1.2E-23 T 11-10-2018 dqs_3409 1129436457f1a3e14b034f62524f0ab8 403 Pfam PF13692 Glycosyl transferases group 1 219 355 4.1E-28 T 11-10-2018 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 SMART SM00382 252 395 3.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 445 454 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 318 333 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 Gene3D G3DSA:1.10.10.60 495 557 8.2E-10 T 11-10-2018 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 SMART SM00989 124 186 3.9E-26 T 11-10-2018 IPR004096 4-vinyl reductase, 4VR dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 256 269 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 Pfam PF06505 Activator of aromatic catabolism 13 113 2.4E-34 T 11-10-2018 IPR010523 Activator of aromatic catabolism dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 SUPERFAMILY SSF52540 231 463 3.84E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 Gene3D G3DSA:1.10.8.60 403 481 3.1E-22 T 11-10-2018 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 Pfam PF00158 Sigma-54 interaction domain 232 398 1.6E-68 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 Pfam PF02954 Bacterial regulatory protein, Fis family 516 555 1.3E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 Gene3D G3DSA:3.40.50.300 223 402 3.5E-64 T 11-10-2018 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 SUPERFAMILY SSF111126 48 183 4.34E-16 T 11-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 Pfam PF02830 V4R domain 125 186 3.4E-15 T 11-10-2018 IPR004096 4-vinyl reductase, 4VR dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 Gene3D G3DSA:3.30.1380.20 98 192 1.6E-7 T 11-10-2018 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 522 539 9.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 539 559 9.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 ProDom PD485437 REGULATOR TRANSCRIPTIONAL FIS-TYPE HELIX-TURN-HELIX ACTIVATOR PLASMID FAMILY PHENOL-DEGRADATIVE FIS SIGMA-54 31 140 2.0E-39 T 11-10-2018 IPR010523 Activator of aromatic catabolism dqs_1992 a5e4b40f89a32d67b0723f1040746d8b 561 SUPERFAMILY SSF46689 446 555 8.06E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 SUPERFAMILY SSF56014 407 549 6.02E-41 T 11-10-2018 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 452 550 4.8E-13 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 SUPERFAMILY SSF55124 1 126 2.76E-34 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 Gene3D G3DSA:3.30.413.10 119 318 1.4E-79 T 11-10-2018 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 109 3.3E-17 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 329 398 2.5E-14 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 Gene3D G3DSA:3.90.480.10 53 389 1.4E-79 T 11-10-2018 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 272 3.9E-45 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 Gene3D G3DSA:3.30.413.10 408 559 2.2E-35 T 11-10-2018 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 SUPERFAMILY SSF56014 120 285 7.98E-50 T 11-10-2018 dqs_0443 0c0222e19c980c96637a52803e13ebd5 560 SUPERFAMILY SSF55124 252 421 1.64E-25 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_3477 a3c30b8f79d1c614ac603b6660a3a09b 142 Pfam PF02416 mttA/Hcf106 family 5 53 6.2E-10 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 dqs_3477 a3c30b8f79d1c614ac603b6660a3a09b 142 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 5.7E-17 T 11-10-2018 dqs_3477 a3c30b8f79d1c614ac603b6660a3a09b 142 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 5.7E-17 T 11-10-2018 dqs_3477 a3c30b8f79d1c614ac603b6660a3a09b 142 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 5.7E-17 T 11-10-2018 dqs_3477 a3c30b8f79d1c614ac603b6660a3a09b 142 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 128 16.406 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 dqs_3477 a3c30b8f79d1c614ac603b6660a3a09b 142 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 75 1.6E-22 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 dqs_3172 db07a534d976a47602eb274e791d4756 961 SMART SM00926 264 321 3.8E-15 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3172 db07a534d976a47602eb274e791d4756 961 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 36 53 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3172 db07a534d976a47602eb274e791d4756 961 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 706 723 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 dqs_3172 db07a534d976a47602eb274e791d4756 961 Gene3D G3DSA:2.20.25.90 265 320 2.1E-17 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 5 80 4.5E-18 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 267 318 1.6E-12 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3172 db07a534d976a47602eb274e791d4756 961 Gene3D G3DSA:3.40.228.10 416 614 1.7E-176 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 Gene3D G3DSA:3.10.20.740 6 120 3.6E-23 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 Pfam PF13187 4Fe-4S dicluster domain 145 203 1.8E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3172 db07a534d976a47602eb274e791d4756 961 Pfam PF01568 Molydopterin dinucleotide binding domain 847 952 1.1E-27 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_3172 db07a534d976a47602eb274e791d4756 961 SUPERFAMILY SSF53706 260 792 5.37E-194 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 270 955 2.0E-216 T 11-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 dqs_3172 db07a534d976a47602eb274e791d4756 961 PIRSF PIRSF036643 2 959 0.0 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 Gene3D G3DSA:3.40.50.740 350 802 1.7E-176 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 SUPERFAMILY SSF54862 131 206 1.81E-15 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 Gene3D G3DSA:3.30.70.20 125 206 4.0E-20 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 SUPERFAMILY SSF50692 810 955 9.04E-42 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_3172 db07a534d976a47602eb274e791d4756 961 Pfam PF00384 Molybdopterin oxidoreductase 324 760 6.7E-87 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3172 db07a534d976a47602eb274e791d4756 961 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 189 200 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3172 db07a534d976a47602eb274e791d4756 961 Gene3D G3DSA:2.40.40.20 836 957 4.1E-39 T 11-10-2018 dqs_3172 db07a534d976a47602eb274e791d4756 961 SUPERFAMILY SSF54292 7 124 6.29E-30 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_3543 58e5b58768256120152d59c4c261eaaf 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 11-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3543 58e5b58768256120152d59c4c261eaaf 101 Gene3D G3DSA:4.10.830.10 41 101 4.2E-23 T 11-10-2018 dqs_3543 58e5b58768256120152d59c4c261eaaf 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 1.6E-26 T 11-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3543 58e5b58768256120152d59c4c261eaaf 101 SUPERFAMILY SSF57716 2 101 1.78E-36 T 11-10-2018 dqs_3543 58e5b58768256120152d59c4c261eaaf 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.841 T 11-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid dqs_1652 a0611f5641d10985abf14361cb0efe88 580 SUPERFAMILY SSF51735 292 428 1.3E-27 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1652 a0611f5641d10985abf14361cb0efe88 580 Pfam PF02254 TrkA-N domain 132 253 2.7E-19 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 dqs_1652 a0611f5641d10985abf14361cb0efe88 580 Pfam PF02254 TrkA-N domain 297 406 4.9E-19 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 dqs_1652 a0611f5641d10985abf14361cb0efe88 580 SUPERFAMILY SSF51735 131 277 5.79E-25 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1652 a0611f5641d10985abf14361cb0efe88 580 Pfam PF07885 Ion channel 24 104 1.4E-7 T 11-10-2018 IPR013099 Potassium channel domain dqs_1652 a0611f5641d10985abf14361cb0efe88 580 Gene3D G3DSA:1.10.287.70 14 120 1.3E-8 T 11-10-2018 dqs_1652 a0611f5641d10985abf14361cb0efe88 580 Gene3D G3DSA:3.40.50.720 283 419 1.0E-25 T 11-10-2018 dqs_1652 a0611f5641d10985abf14361cb0efe88 580 Gene3D G3DSA:3.40.50.720 126 269 4.1E-27 T 11-10-2018 dqs_1652 a0611f5641d10985abf14361cb0efe88 580 SUPERFAMILY SSF81324 7 151 6.15E-15 T 11-10-2018 dqs_1652 a0611f5641d10985abf14361cb0efe88 580 SUPERFAMILY SSF116726 495 537 3.79E-5 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 Gene3D G3DSA:3.40.30.60 364 507 1.3E-52 T 11-10-2018 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 PIRSF PIRSF005419 2 699 6.9E-250 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 17 695 1.7E-273 T 11-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 Gene3D G3DSA:1.10.490.80 599 695 4.9E-8 T 11-10-2018 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 Pfam PF00771 FHIPEP family 27 686 1.0E-274 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 143 166 - T 11-10-2018 IPR025505 FHIPEP conserved site dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 Gene3D G3DSA:1.10.8.540 508 595 1.9E-27 T 11-10-2018 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 71 90 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 34 47 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 238 252 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 157 175 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 187 204 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 dqs_1215 792b9b56b67b974f5fb8de75e825161e 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 138 154 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 dqs_2417 433084a599ef0cffe3658a44c1046b68 438 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 434 3.7E-82 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_2417 433084a599ef0cffe3658a44c1046b68 438 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 429 6.1E-74 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit dqs_2417 433084a599ef0cffe3658a44c1046b68 438 PIRSF PIRSF006066 5 438 1.1E-80 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_0113 0f9d52a3d5b129266e579ac42af11fbb 370 SUPERFAMILY SSF54001 157 280 6.87E-22 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_0113 0f9d52a3d5b129266e579ac42af11fbb 370 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 24 6.5E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_0113 0f9d52a3d5b129266e579ac42af11fbb 370 Pfam PF01841 Transglutaminase-like superfamily 161 279 2.7E-22 T 11-10-2018 IPR002931 Transglutaminase-like dqs_0113 0f9d52a3d5b129266e579ac42af11fbb 370 Gene3D G3DSA:3.10.620.30 126 288 3.8E-16 T 11-10-2018 dqs_0113 0f9d52a3d5b129266e579ac42af11fbb 370 SMART SM00460 207 281 1.4E-13 T 11-10-2018 IPR002931 Transglutaminase-like dqs_0739 b08fea1ca73afc7e585d9ed72ad0d445 155 Gene3D G3DSA:1.10.1130.10 56 123 6.4E-28 T 11-10-2018 dqs_0739 b08fea1ca73afc7e585d9ed72ad0d445 155 PIRSF PIRSF006105 1 152 1.5E-56 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB dqs_0739 b08fea1ca73afc7e585d9ed72ad0d445 155 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 15 136 6.5E-49 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB dqs_0739 b08fea1ca73afc7e585d9ed72ad0d445 155 SUPERFAMILY SSF48695 23 142 1.17E-43 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily dqs_0623 76b562a7c12ab685838f77bf70751b3c 346 PIRSF PIRSF016624 1 345 2.1E-70 T 11-10-2018 IPR012106 Protease, Mu phage/prophage I type dqs_0623 76b562a7c12ab685838f77bf70751b3c 346 Pfam PF10123 Mu-like prophage I protein 27 341 5.3E-91 T 11-10-2018 IPR012106 Protease, Mu phage/prophage I type dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SUPERFAMILY SSF55874 468 642 8.91E-51 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Gene3D G3DSA:3.30.450.20 273 404 8.0E-9 T 11-10-2018 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SUPERFAMILY SSF47384 400 480 1.29E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SUPERFAMILY SSF52172 656 781 1.42E-28 T 11-10-2018 IPR011006 CheY-like superfamily dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Gene3D G3DSA:1.20.120.160 943 1054 8.8E-12 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Gene3D G3DSA:3.40.50.2300 798 926 1.8E-40 T 11-10-2018 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Pfam PF00072 Response regulator receiver domain 660 775 3.4E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Pfam PF00072 Response regulator receiver domain 804 918 1.1E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Pfam PF12860 PAS fold 291 404 2.4E-16 T 11-10-2018 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 526 639 4.7E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Pfam PF00512 His Kinase A (phospho-acceptor) domain 415 479 3.3E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Gene3D G3DSA:3.40.50.12740 656 794 1.9E-31 T 11-10-2018 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 PRINTS PR00344 Bacterial sensor protein C-terminal signature 584 594 1.8E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 638 1.8E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 619 1.8E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 580 1.8E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SUPERFAMILY SSF55785 271 399 8.17E-11 T 11-10-2018 IPR035965 PAS domain superfamily dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Gene3D G3DSA:1.10.287.130 405 479 1.8E-25 T 11-10-2018 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SMART SM00388 414 479 1.0E-25 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SMART SM00387 526 641 1.3E-41 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SUPERFAMILY SSF52172 802 923 8.11E-40 T 11-10-2018 IPR011006 CheY-like superfamily dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SUPERFAMILY SSF47226 901 1034 1.11E-15 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 Gene3D G3DSA:3.30.565.10 480 642 2.4E-55 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SMART SM00448 657 775 6.1E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_4088 5251e01df1593ee7cb00bf18f781b1d2 1064 SMART SM00448 802 918 3.0E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0315 012c8a2f9ed95a66d429b916018bf561 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 33 144 1.6E-24 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 dqs_0315 012c8a2f9ed95a66d429b916018bf561 156 Gene3D G3DSA:3.10.129.10 17 156 1.0E-51 T 11-10-2018 dqs_0315 012c8a2f9ed95a66d429b916018bf561 156 Pfam PF03061 Thioesterase superfamily 64 136 5.7E-13 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 dqs_0315 012c8a2f9ed95a66d429b916018bf561 156 SUPERFAMILY SSF54637 14 141 2.77E-31 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_0315 012c8a2f9ed95a66d429b916018bf561 156 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 34 146 1.5E-49 T 11-10-2018 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 dqs_2117 78c26447c4fd81dbde8603951c1bd4fd 189 SUPERFAMILY SSF50475 30 182 2.55E-48 T 11-10-2018 dqs_2117 78c26447c4fd81dbde8603951c1bd4fd 189 SMART SM00903 38 183 5.6E-60 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_2117 78c26447c4fd81dbde8603951c1bd4fd 189 Gene3D G3DSA:2.30.110.10 19 189 5.1E-53 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_2117 78c26447c4fd81dbde8603951c1bd4fd 189 Pfam PF01613 Flavin reductase like domain 39 184 2.7E-37 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR00701 60kDa inner membrane protein signature 245 260 6.6E-76 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR00701 60kDa inner membrane protein signature 318 338 6.6E-76 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR00701 60kDa inner membrane protein signature 68 89 6.6E-76 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR00701 60kDa inner membrane protein signature 492 515 6.6E-76 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR00701 60kDa inner membrane protein signature 210 228 6.6E-76 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR00701 60kDa inner membrane protein signature 409 432 6.6E-76 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR00701 60kDa inner membrane protein signature 456 478 6.6E-76 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR00701 60kDa inner membrane protein signature 155 175 6.6E-76 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 1 528 23.94 T 11-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 Pfam PF14849 YidC periplasmic domain 62 336 6.1E-87 T 11-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain dqs_4132 e603a915a7cb4064f839904a213d1475 538 Gene3D G3DSA:2.70.98.90 59 327 2.4E-87 T 11-10-2018 IPR038221 YidC, periplasmic domain superfamily dqs_4132 e603a915a7cb4064f839904a213d1475 538 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 2 346 1.8E-108 T 11-10-2018 IPR028053 Membrane insertase YidC, N-terminal dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR01900 YidC translocation/secretion protein signature 462 477 2.0E-25 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR01900 YidC translocation/secretion protein signature 333 349 2.0E-25 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 PRINTS PR01900 YidC translocation/secretion protein signature 481 505 2.0E-25 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_4132 e603a915a7cb4064f839904a213d1475 538 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 347 526 5.6E-70 T 11-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_4132 e603a915a7cb4064f839904a213d1475 538 Pfam PF02096 60Kd inner membrane protein 348 525 9.1E-60 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 dqs_2356 5a95806e812b93b6a9baa46a95eeba4f 431 SUPERFAMILY SSF51556 70 373 1.36E-101 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_2356 5a95806e812b93b6a9baa46a95eeba4f 431 SUPERFAMILY SSF51338 28 87 4.32E-10 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_2356 5a95806e812b93b6a9baa46a95eeba4f 431 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 28 425 2.4E-182 T 11-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 dqs_2356 5a95806e812b93b6a9baa46a95eeba4f 431 Pfam PF01979 Amidohydrolase family 68 425 1.7E-67 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 dqs_2356 5a95806e812b93b6a9baa46a95eeba4f 431 Gene3D G3DSA:3.20.20.140 71 388 3.2E-182 T 11-10-2018 dqs_2356 5a95806e812b93b6a9baa46a95eeba4f 431 Gene3D G3DSA:2.30.40.10 8 423 3.2E-182 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 Gene3D G3DSA:3.40.50.1440 11 312 3.8E-104 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 SMART SM00864 13 200 1.5E-99 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 SUPERFAMILY SSF55307 199 314 5.49E-36 T 11-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 167 3.1E-34 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 329 33.825 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 SUPERFAMILY SSF52490 14 203 1.31E-61 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 PRINTS PR00423 Cell division protein FtsZ signature 184 206 2.4E-43 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 PRINTS PR00423 Cell division protein FtsZ signature 123 144 2.4E-43 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 PRINTS PR00423 Cell division protein FtsZ signature 95 115 2.4E-43 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 PRINTS PR00423 Cell division protein FtsZ signature 207 228 2.4E-43 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 316 3.8E-110 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 SMART SM00865 202 320 4.3E-47 T 11-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 dqs_0960 bac0a436a708cdba289007f1bf71b228 380 Pfam PF12327 FtsZ family, C-terminal domain 217 311 9.5E-28 T 11-10-2018 IPR024757 Cell division protein FtsZ, C-terminal dqs_1818 e95101eed9649cee594aeb6e65a987d4 276 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 230 249 6.8E-5 T 11-10-2018 dqs_1818 e95101eed9649cee594aeb6e65a987d4 276 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 156 166 6.8E-5 T 11-10-2018 dqs_1818 e95101eed9649cee594aeb6e65a987d4 276 Pfam PF12710 haloacid dehalogenase-like hydrolase 73 240 1.7E-24 T 11-10-2018 dqs_1818 e95101eed9649cee594aeb6e65a987d4 276 SUPERFAMILY SSF56784 66 272 3.8E-51 T 11-10-2018 IPR036412 HAD-like superfamily dqs_1818 e95101eed9649cee594aeb6e65a987d4 276 Pfam PF13284 Domain of unknown function (DUF4072) 3 42 4.7E-9 T 11-10-2018 IPR025138 Domain of unknown function DUF4072 dqs_1818 e95101eed9649cee594aeb6e65a987d4 276 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 68 273 7.7E-68 T 11-10-2018 dqs_1818 e95101eed9649cee594aeb6e65a987d4 276 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 71 242 4.8E-35 T 11-10-2018 dqs_1818 e95101eed9649cee594aeb6e65a987d4 276 Gene3D G3DSA:3.40.50.1000 16 276 2.4E-75 T 11-10-2018 IPR023214 HAD superfamily dqs_3644 f693a0a731d3220b0f85b525132e532d 207 SUPERFAMILY SSF52540 5 198 5.83E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3644 f693a0a731d3220b0f85b525132e532d 207 Hamap MF_01389 Urease accessory protein UreG [ureG]. 5 203 47.924 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 dqs_3644 f693a0a731d3220b0f85b525132e532d 207 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 7 202 1.2E-106 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 dqs_3644 f693a0a731d3220b0f85b525132e532d 207 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 179 1.3E-36 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain dqs_3644 f693a0a731d3220b0f85b525132e532d 207 PIRSF PIRSF005624 1 206 2.1E-48 T 11-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 dqs_3644 f693a0a731d3220b0f85b525132e532d 207 Gene3D G3DSA:3.40.50.300 6 203 2.8E-50 T 11-10-2018 dqs_2723 7eee42ee4a9d71bf2ad64703ce62d001 166 Pfam PF04542 Sigma-70 region 2 9 69 1.2E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_2723 7eee42ee4a9d71bf2ad64703ce62d001 166 Pfam PF08281 Sigma-70, region 4 99 149 1.7E-18 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_2723 7eee42ee4a9d71bf2ad64703ce62d001 166 Gene3D G3DSA:1.10.1740.10 3 63 2.1E-23 T 11-10-2018 dqs_2723 7eee42ee4a9d71bf2ad64703ce62d001 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 151 3.3E-25 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_2723 7eee42ee4a9d71bf2ad64703ce62d001 166 SUPERFAMILY SSF88659 96 154 8.97E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_2723 7eee42ee4a9d71bf2ad64703ce62d001 166 SUPERFAMILY SSF88946 7 86 4.32E-20 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_2723 7eee42ee4a9d71bf2ad64703ce62d001 166 Gene3D G3DSA:1.10.10.10 95 155 2.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2056 cccd338af891273032558a097c29930c 759 Gene3D G3DSA:3.10.20.310 259 334 1.4E-17 T 11-10-2018 dqs_2056 cccd338af891273032558a097c29930c 759 PIRSF PIRSF006076 1 759 5.5E-260 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 dqs_2056 cccd338af891273032558a097c29930c 759 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 15 759 3.3E-275 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 dqs_2056 cccd338af891273032558a097c29930c 759 Gene3D G3DSA:3.10.20.310 10 82 1.8E-21 T 11-10-2018 dqs_2056 cccd338af891273032558a097c29930c 759 Gene3D G3DSA:2.40.160.50 416 759 2.1E-114 T 11-10-2018 dqs_2056 cccd338af891273032558a097c29930c 759 Pfam PF07244 Surface antigen variable number repeat 338 412 1.4E-14 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 dqs_2056 cccd338af891273032558a097c29930c 759 Pfam PF07244 Surface antigen variable number repeat 257 335 2.5E-13 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 dqs_2056 cccd338af891273032558a097c29930c 759 Pfam PF07244 Surface antigen variable number repeat 84 163 1.9E-13 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 dqs_2056 cccd338af891273032558a097c29930c 759 Pfam PF07244 Surface antigen variable number repeat 167 254 1.8E-18 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 dqs_2056 cccd338af891273032558a097c29930c 759 Pfam PF07244 Surface antigen variable number repeat 16 81 3.6E-6 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 dqs_2056 cccd338af891273032558a097c29930c 759 Gene3D G3DSA:3.10.20.310 83 163 6.4E-19 T 11-10-2018 dqs_2056 cccd338af891273032558a097c29930c 759 Pfam PF01103 Surface antigen 439 759 2.1E-81 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 dqs_2056 cccd338af891273032558a097c29930c 759 Gene3D G3DSA:3.10.20.310 166 257 1.2E-24 T 11-10-2018 dqs_2056 cccd338af891273032558a097c29930c 759 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 759 25.826 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 dqs_2056 cccd338af891273032558a097c29930c 759 Gene3D G3DSA:3.10.20.310 339 415 1.1E-25 T 11-10-2018 dqs_1251 ef1c67d4bdc6e349fd22d21964f1871d 141 SUPERFAMILY SSF55811 7 127 3.38E-29 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_1251 ef1c67d4bdc6e349fd22d21964f1871d 141 Pfam PF00293 NUDIX domain 12 117 5.5E-22 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 dqs_1251 ef1c67d4bdc6e349fd22d21964f1871d 141 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 dqs_1251 ef1c67d4bdc6e349fd22d21964f1871d 141 PRINTS PR00502 NUDIX hydrolase family signature 49 64 1.3E-7 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 dqs_1251 ef1c67d4bdc6e349fd22d21964f1871d 141 PRINTS PR00502 NUDIX hydrolase family signature 35 49 1.3E-7 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 dqs_1251 ef1c67d4bdc6e349fd22d21964f1871d 141 Gene3D G3DSA:3.90.79.10 7 132 1.7E-30 T 11-10-2018 dqs_0159 8dde277b2959eaf659b4cffc43b8478f 712 Gene3D G3DSA:3.40.50.12780 196 612 4.2E-77 T 11-10-2018 dqs_0159 8dde277b2959eaf659b4cffc43b8478f 712 Gene3D G3DSA:3.30.300.30 614 711 3.5E-11 T 11-10-2018 dqs_0159 8dde277b2959eaf659b4cffc43b8478f 712 SMART SM00563 32 142 3.7E-23 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0159 8dde277b2959eaf659b4cffc43b8478f 712 Pfam PF00501 AMP-binding enzyme 216 617 1.5E-63 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_0159 8dde277b2959eaf659b4cffc43b8478f 712 Pfam PF01553 Acyltransferase 18 138 3.2E-17 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0159 8dde277b2959eaf659b4cffc43b8478f 712 SUPERFAMILY SSF69593 6 198 1.7E-23 T 11-10-2018 dqs_0159 8dde277b2959eaf659b4cffc43b8478f 712 ProSitePatterns PS00455 Putative AMP-binding domain signature. 373 384 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_0159 8dde277b2959eaf659b4cffc43b8478f 712 SUPERFAMILY SSF56801 200 710 8.5E-97 T 11-10-2018 dqs_0453 3c1924d33d4a172f0514916fdd9f9dd6 299 Gene3D G3DSA:3.40.190.10 132 227 1.8E-101 T 11-10-2018 dqs_0453 3c1924d33d4a172f0514916fdd9f9dd6 299 SUPERFAMILY SSF53850 1 270 1.23E-66 T 11-10-2018 dqs_0453 3c1924d33d4a172f0514916fdd9f9dd6 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 268 7.4E-54 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_0453 3c1924d33d4a172f0514916fdd9f9dd6 299 Gene3D G3DSA:3.40.190.10 28 273 1.8E-101 T 11-10-2018 dqs_0453 3c1924d33d4a172f0514916fdd9f9dd6 299 SMART SM00062 38 270 2.8E-59 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_0453 3c1924d33d4a172f0514916fdd9f9dd6 299 SMART SM00079 38 269 0.0043 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 dqs_1006 70ba8c3b73a58dbb3e7a6f5f027a0e4e 413 Gene3D G3DSA:3.30.479.30 149 256 4.4E-18 T 11-10-2018 dqs_1006 70ba8c3b73a58dbb3e7a6f5f027a0e4e 413 TIGRFAM TIGR01933 hflK: HflK protein 94 367 2.3E-95 T 11-10-2018 IPR010201 HflK GO:0016021 dqs_1006 70ba8c3b73a58dbb3e7a6f5f027a0e4e 413 SUPERFAMILY SSF117892 156 272 2.62E-18 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily dqs_1006 70ba8c3b73a58dbb3e7a6f5f027a0e4e 413 Pfam PF01145 SPFH domain / Band 7 family 96 280 5.1E-22 T 11-10-2018 IPR001107 Band 7 domain dqs_1006 70ba8c3b73a58dbb3e7a6f5f027a0e4e 413 Pfam PF12221 Bacterial membrane protein N terminal 1 50 1.2E-14 T 11-10-2018 IPR020980 Menbrane protein HflK, N-terminal dqs_1006 70ba8c3b73a58dbb3e7a6f5f027a0e4e 413 SMART SM00244 92 265 1.4E-24 T 11-10-2018 IPR001107 Band 7 domain dqs_0033 8d273b98811780c81f3b8ca256d89416 340 SUPERFAMILY SSF51735 157 256 7.51E-5 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0033 8d273b98811780c81f3b8ca256d89416 340 Pfam PF02625 XdhC and CoxI family 15 82 1.9E-23 T 11-10-2018 IPR003777 XdhC- CoxI dqs_0033 8d273b98811780c81f3b8ca256d89416 340 Gene3D G3DSA:3.40.50.720 163 311 3.9E-44 T 11-10-2018 dqs_0033 8d273b98811780c81f3b8ca256d89416 340 Pfam PF13478 XdhC Rossmann domain 164 305 8.6E-38 T 11-10-2018 IPR027051 XdhC Rossmann domain dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 SUPERFAMILY SSF52317 556 671 1.53E-17 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 SMART SM01060 41 429 2.2E-272 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 SUPERFAMILY SSF56634 33 528 1.03E-215 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 Pfam PF06628 Catalase-related immune-responsive 457 519 6.5E-22 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 371 379 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 Gene3D G3DSA:2.40.180.10 3 451 2.5E-202 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 PRINTS PR00067 Catalase signature 54 77 7.0E-68 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 PRINTS PR00067 Catalase signature 117 135 7.0E-68 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 PRINTS PR00067 Catalase signature 358 384 7.0E-68 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 PRINTS PR00067 Catalase signature 157 175 7.0E-68 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 PRINTS PR00067 Catalase signature 138 155 7.0E-68 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 PRINTS PR00067 Catalase signature 326 353 7.0E-68 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 PIRSF PIRSF038927 28 704 0.0 T 11-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 Gene3D G3DSA:1.20.1370.20 454 554 6.8E-32 T 11-10-2018 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 ProSitePatterns PS00438 Catalase proximal active site signature. 77 93 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 Gene3D G3DSA:3.40.50.880 557 703 3.0E-30 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3919 4d193e9be58b47a9f6db9b614ad21d38 704 Pfam PF00199 Catalase 41 425 1.9E-179 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 dqs_1482 72910a67b14be9570309361fac6ecce0 538 SUPERFAMILY SSF56317 5 237 1.28E-60 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily dqs_1482 72910a67b14be9570309361fac6ecce0 538 Pfam PF00795 Carbon-nitrogen hydrolase 7 231 1.6E-22 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 dqs_1482 72910a67b14be9570309361fac6ecce0 538 TIGRFAM TIGR00552 nadE: NAD+ synthetase 270 513 3.1E-58 T 11-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 dqs_1482 72910a67b14be9570309361fac6ecce0 538 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 5 536 29.387 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 dqs_1482 72910a67b14be9570309361fac6ecce0 538 PIRSF PIRSF006630 2 247 4.4E-75 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 dqs_1482 72910a67b14be9570309361fac6ecce0 538 PIRSF PIRSF006630 246 538 5.2E-116 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 dqs_1482 72910a67b14be9570309361fac6ecce0 538 Gene3D G3DSA:3.40.50.620 260 538 3.9E-117 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1482 72910a67b14be9570309361fac6ecce0 538 Gene3D G3DSA:3.60.110.10 1 248 1.2E-87 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily dqs_1482 72910a67b14be9570309361fac6ecce0 538 Pfam PF02540 NAD synthase 263 511 6.8E-73 T 11-10-2018 IPR022310 NAD/GMP synthase dqs_1482 72910a67b14be9570309361fac6ecce0 538 SUPERFAMILY SSF52402 253 520 3.45E-77 T 11-10-2018 dqs_1429 a2550d779a2b05ee844fa455be3a6232 338 Pfam PF06996 Type VI secretion, TssG 19 320 4.3E-90 T 11-10-2018 IPR010732 Type VI secretion, TssG-like dqs_1429 a2550d779a2b05ee844fa455be3a6232 338 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 320 1.2E-87 T 11-10-2018 IPR010732 Type VI secretion, TssG-like dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 SUPERFAMILY SSF47240 43 85 2.97E-5 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 338 352 8.4E-28 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 614 625 8.4E-28 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 490 504 8.4E-28 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 689 708 8.4E-28 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 636 646 8.4E-28 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 712 724 8.4E-28 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 492 498 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 Gene3D G3DSA:1.10.620.20 21 114 3.4E-7 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 Gene3D G3DSA:3.40.50.1000 471 740 3.9E-85 T 11-10-2018 IPR023214 HAD superfamily dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 Pfam PF04945 YHS domain 42 84 2.4E-13 T 11-10-2018 IPR007029 YHS domain dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 196 799 9.1E-168 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 Pfam PF00122 E1-E2 ATPase 288 469 5.6E-55 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 259 782 9.3E-82 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 SUPERFAMILY SSF81653 290 388 9.55E-27 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 Gene3D G3DSA:2.70.150.20 281 393 8.2E-42 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 Pfam PF00702 haloacid dehalogenase-like hydrolase 486 703 1.3E-36 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 Gene3D G3DSA:3.40.1110.10 501 621 3.9E-85 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 SUPERFAMILY SSF81665 256 786 1.96E-12 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 215 798 1.2E-176 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00943 Copper-transporting ATPase signature 762 776 1.1E-10 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00943 Copper-transporting ATPase signature 666 683 1.1E-10 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00943 Copper-transporting ATPase signature 200 219 1.1E-10 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00943 Copper-transporting ATPase signature 411 425 1.1E-10 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00943 Copper-transporting ATPase signature 257 276 1.1E-10 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00943 Copper-transporting ATPase signature 473 488 1.1E-10 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 PRINTS PR00943 Copper-transporting ATPase signature 277 295 1.1E-10 T 11-10-2018 dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 SMART SM00746 43 80 2.1E-5 T 11-10-2018 IPR011017 TRASH domain dqs_3091 32dfb45eae3d8a0110431ceb67131878 803 SUPERFAMILY SSF56784 488 796 5.89E-53 T 11-10-2018 IPR036412 HAD-like superfamily dqs_3391 5d7b2a7d5645da3e7228efa4ae3dc3c6 228 SUPERFAMILY SSF55729 70 187 2.02E-11 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3391 5d7b2a7d5645da3e7228efa4ae3dc3c6 228 Gene3D G3DSA:3.40.630.30 33 194 5.4E-11 T 11-10-2018 dqs_0184 834afecce253ee58c11f4d92dd58e1d6 305 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 12 277 2.8E-49 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 dqs_0184 834afecce253ee58c11f4d92dd58e1d6 305 Pfam PF04085 rod shape-determining protein MreC 131 274 3.0E-35 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 dqs_0184 834afecce253ee58c11f4d92dd58e1d6 305 PIRSF PIRSF038471 9 288 1.2E-70 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 dqs_0184 834afecce253ee58c11f4d92dd58e1d6 305 Gene3D G3DSA:2.40.10.340 128 273 5.3E-31 T 11-10-2018 dqs_0184 834afecce253ee58c11f4d92dd58e1d6 305 Gene3D G3DSA:2.40.10.350 187 262 5.3E-31 T 11-10-2018 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 102 228 6.2E-35 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 Gene3D G3DSA:1.10.287.90 26 97 1.3E-78 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 SUPERFAMILY SSF46626 252 341 5.7E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 SUPERFAMILY SSF49503 94 291 1.52E-50 T 11-10-2018 IPR008972 Cupredoxin dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 15 237 1.6E-58 T 11-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 Gene3D G3DSA:1.10.760.10 242 358 3.3E-30 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 173 221 - T 11-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 Gene3D G3DSA:2.60.40.420 98 237 1.3E-78 T 11-10-2018 IPR008972 Cupredoxin dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 8 86 1.1E-12 T 11-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 260 334 5.4E-13 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 SUPERFAMILY SSF81464 7 96 1.34E-25 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 PRINTS PR01166 Cytochrome c oxidase subunit II signature 76 96 2.7E-34 T 11-10-2018 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 PRINTS PR01166 Cytochrome c oxidase subunit II signature 210 227 2.7E-34 T 11-10-2018 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 PRINTS PR01166 Cytochrome c oxidase subunit II signature 64 76 2.7E-34 T 11-10-2018 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 PRINTS PR01166 Cytochrome c oxidase subunit II signature 148 169 2.7E-34 T 11-10-2018 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 PRINTS PR01166 Cytochrome c oxidase subunit II signature 98 117 2.7E-34 T 11-10-2018 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 PRINTS PR01166 Cytochrome c oxidase subunit II signature 172 192 2.7E-34 T 11-10-2018 dqs_3442 2f084365801eb5c9d4840c88aaffcea4 358 PRINTS PR01166 Cytochrome c oxidase subunit II signature 192 209 2.7E-34 T 11-10-2018 dqs_0631 c253e34246dabccbc722d3465b2708aa 828 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 154 228 1.2E-21 T 11-10-2018 IPR013491 Caudovirus, tape measure, N-terminal dqs_1667 db63a3373bf30211e56978791dbed086 828 SMART SM00086 76 118 0.083 T 11-10-2018 IPR001610 PAC motif dqs_1667 db63a3373bf30211e56978791dbed086 828 SMART SM00086 329 371 3.4E-4 T 11-10-2018 IPR001610 PAC motif dqs_1667 db63a3373bf30211e56978791dbed086 828 SMART SM00086 206 249 3.7 T 11-10-2018 IPR001610 PAC motif dqs_1667 db63a3373bf30211e56978791dbed086 828 Pfam PF00990 Diguanylate cyclase, GGDEF domain 382 539 3.5E-50 T 11-10-2018 IPR000160 GGDEF domain dqs_1667 db63a3373bf30211e56978791dbed086 828 Pfam PF00563 EAL domain 561 794 1.9E-72 T 11-10-2018 IPR001633 EAL domain dqs_1667 db63a3373bf30211e56978791dbed086 828 SUPERFAMILY SSF55785 115 247 1.17E-21 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1667 db63a3373bf30211e56978791dbed086 828 SUPERFAMILY SSF55785 9 121 9.18E-23 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1667 db63a3373bf30211e56978791dbed086 828 SUPERFAMILY SSF55785 262 369 8.38E-29 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1667 db63a3373bf30211e56978791dbed086 828 PIRSF PIRSF005925 250 376 1.8E-8 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_1667 db63a3373bf30211e56978791dbed086 828 PIRSF PIRSF005925 119 261 0.0042 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_1667 db63a3373bf30211e56978791dbed086 828 PIRSF PIRSF005925 369 828 3.3E-141 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_1667 db63a3373bf30211e56978791dbed086 828 PIRSF PIRSF005925 2 138 1.9 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_1667 db63a3373bf30211e56978791dbed086 828 Gene3D G3DSA:3.20.20.450 556 807 1.5E-99 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1667 db63a3373bf30211e56978791dbed086 828 SUPERFAMILY SSF141868 558 808 1.96E-88 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1667 db63a3373bf30211e56978791dbed086 828 Gene3D G3DSA:3.30.450.20 127 259 3.5E-23 T 11-10-2018 dqs_1667 db63a3373bf30211e56978791dbed086 828 SMART SM00267 371 543 3.3E-66 T 11-10-2018 IPR000160 GGDEF domain dqs_1667 db63a3373bf30211e56978791dbed086 828 Pfam PF13426 PAS domain 268 370 1.9E-15 T 11-10-2018 IPR000014 PAS domain dqs_1667 db63a3373bf30211e56978791dbed086 828 Gene3D G3DSA:3.30.450.20 260 380 2.6E-35 T 11-10-2018 dqs_1667 db63a3373bf30211e56978791dbed086 828 SUPERFAMILY SSF55073 387 544 5.81E-50 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1667 db63a3373bf30211e56978791dbed086 828 Gene3D G3DSA:3.30.70.270 381 555 4.5E-62 T 11-10-2018 dqs_1667 db63a3373bf30211e56978791dbed086 828 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 261 378 3.9E-19 T 11-10-2018 IPR000014 PAS domain dqs_1667 db63a3373bf30211e56978791dbed086 828 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 126 256 4.4E-17 T 11-10-2018 IPR000014 PAS domain dqs_1667 db63a3373bf30211e56978791dbed086 828 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 124 1.3E-17 T 11-10-2018 IPR000014 PAS domain dqs_1667 db63a3373bf30211e56978791dbed086 828 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 378 541 1.7E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_1667 db63a3373bf30211e56978791dbed086 828 SMART SM00091 130 197 1.9E-5 T 11-10-2018 IPR000014 PAS domain dqs_1667 db63a3373bf30211e56978791dbed086 828 SMART SM00091 257 323 6.8E-6 T 11-10-2018 IPR000014 PAS domain dqs_1667 db63a3373bf30211e56978791dbed086 828 SMART SM00091 4 70 1.2E-9 T 11-10-2018 IPR000014 PAS domain dqs_1667 db63a3373bf30211e56978791dbed086 828 Gene3D G3DSA:3.30.450.20 1 126 3.2E-23 T 11-10-2018 dqs_1667 db63a3373bf30211e56978791dbed086 828 Pfam PF08448 PAS fold 10 120 1.1E-18 T 11-10-2018 IPR013656 PAS fold-4 dqs_1667 db63a3373bf30211e56978791dbed086 828 Pfam PF08448 PAS fold 138 251 3.6E-15 T 11-10-2018 IPR013656 PAS fold-4 dqs_1667 db63a3373bf30211e56978791dbed086 828 SMART SM00052 553 799 5.2E-119 T 11-10-2018 IPR001633 EAL domain dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 SUPERFAMILY SSF53659 429 753 2.75E-82 T 11-10-2018 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 Gene3D G3DSA:3.40.50.10950 444 750 4.4E-85 T 11-10-2018 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 SUPERFAMILY SSF53223 10 161 5.4E-51 T 11-10-2018 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 SMART SM00919 163 400 2.7E-138 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 Pfam PF01515 Phosphate acetyl/butaryl transferase 429 750 2.7E-88 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 Gene3D G3DSA:3.40.50.10750 572 726 4.4E-85 T 11-10-2018 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 Gene3D G3DSA:3.40.50.10380 2 160 2.9E-65 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 PIRSF PIRSF036684 1 758 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 3.1E-25 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 SMART SM01274 18 151 5.4E-74 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 Gene3D G3DSA:3.40.50.720 161 443 6.4E-82 T 11-10-2018 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 3.2E-23 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 dqs_0891 e364123260abe96e2a6327971b0aaa0b 758 SUPERFAMILY SSF51735 163 452 9.85E-86 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 SMART SM00859 5 120 2.4E-5 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 Gene3D G3DSA:3.30.360.10 130 267 6.2E-122 T 11-10-2018 dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 117 5.6E-10 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 Gene3D G3DSA:3.40.50.720 5 286 6.2E-122 T 11-10-2018 dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 SUPERFAMILY SSF51735 1 154 2.93E-27 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 PIRSF PIRSF015689 1 299 3.3E-135 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 130 267 1.0E-62 T 11-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 304 144.314 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 3 292 5.6E-141 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2009 7b4e06fc7dcfa1c89286287954d32efb 304 SUPERFAMILY SSF55347 130 268 5.69E-58 T 11-10-2018 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 Pfam PF00072 Response regulator receiver domain 5 116 7.7E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 SMART SM00448 2 115 8.4E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 SMART SM00421 146 203 4.9E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 SUPERFAMILY SSF52172 1 131 4.55E-33 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0579 82708f415c099685dacc0540b4a62a0e 211 SUPERFAMILY SSF46894 143 209 6.46E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 2.3E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 2.3E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 2.3E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 Gene3D G3DSA:3.40.50.12740 3 209 1.2E-60 T 11-10-2018 dqs_0579 82708f415c099685dacc0540b4a62a0e 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 1.5E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1873 91142e9473143ea89a3b659aaabc074d 331 PIRSF PIRSF018005 8 330 2.0E-106 T 11-10-2018 IPR017804 Methyltransferase EgtD-like GO:0008168 dqs_1873 91142e9473143ea89a3b659aaabc074d 331 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 32 327 1.6E-117 T 11-10-2018 IPR035094 Histidine N-alpha-methyltransferase KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 dqs_1873 91142e9473143ea89a3b659aaabc074d 331 Gene3D G3DSA:3.40.50.150 58 228 5.5E-49 T 11-10-2018 dqs_1873 91142e9473143ea89a3b659aaabc074d 331 SUPERFAMILY SSF53335 56 319 8.34E-10 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1873 91142e9473143ea89a3b659aaabc074d 331 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 33 328 8.4E-104 T 11-10-2018 IPR019257 Histidine-specific methyltransferase, SAM-dependent dqs_2403 f48369e511d6ef518fe56753b1b0d830 286 SUPERFAMILY SSF109604 15 273 7.53E-42 T 11-10-2018 dqs_2403 f48369e511d6ef518fe56753b1b0d830 286 Gene3D G3DSA:1.10.3210.10 5 250 6.7E-41 T 11-10-2018 dqs_2403 f48369e511d6ef518fe56753b1b0d830 286 Pfam PF08668 HDOD domain 27 211 7.5E-31 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 11-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 Gene3D G3DSA:3.30.572.10 1 264 6.0E-132 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 Pfam PF00303 Thymidylate synthase 2 264 1.5E-124 T 11-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 1.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 1.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 1.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 1.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 SUPERFAMILY SSF55831 1 264 5.1E-130 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 40.991 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 3.2E-95 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_3334 493cc91de576ecf25163ecb58c0a1d18 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 9.2E-43 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_2540 2e256d65c25a9463581e7d98b480b4b0 728 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 181 1.1E-11 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_2540 2e256d65c25a9463581e7d98b480b4b0 728 SUPERFAMILY SSF56935 54 728 3.11E-73 T 11-10-2018 dqs_2540 2e256d65c25a9463581e7d98b480b4b0 728 Gene3D G3DSA:2.170.130.10 73 185 5.8E-10 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_2540 2e256d65c25a9463581e7d98b480b4b0 728 Pfam PF00593 TonB dependent receptor 288 727 7.0E-31 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_2540 2e256d65c25a9463581e7d98b480b4b0 728 Gene3D G3DSA:2.40.170.20 195 728 1.5E-51 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_3598 f7ca56c520e602e4f7bc47dc05e673de 170 Gene3D G3DSA:2.40.50.180 48 134 3.2E-9 T 11-10-2018 dqs_3598 f7ca56c520e602e4f7bc47dc05e673de 170 SMART SM00260 24 159 4.1E-4 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_3598 f7ca56c520e602e4f7bc47dc05e673de 170 SUPERFAMILY SSF50341 22 162 1.22E-22 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_3598 f7ca56c520e602e4f7bc47dc05e673de 170 Pfam PF01584 CheW-like domain 29 161 3.0E-16 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 Gene3D G3DSA:3.40.50.720 1 246 5.9E-83 T 11-10-2018 dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 245 3.6E-116 T 11-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 183 5.3E-5 T 11-10-2018 dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 2.8E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.8E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.8E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.8E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.8E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.8E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 SUPERFAMILY SSF51735 3 245 2.75E-82 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 Pfam PF00106 short chain dehydrogenase 4 195 7.5E-63 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.8E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 4.8E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1124 8d90231b3bc0b17258f39031402e3c42 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 4.8E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 270 6.7E-15 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 SUPERFAMILY SSF56645 38 281 1.44E-57 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 284 449 3.4E-28 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 157 4.4E-13 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 SUPERFAMILY SSF47203 283 456 1.77E-46 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 34 1.1E-12 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 467 585 1.2E-24 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 Gene3D G3DSA:1.10.540.10 29 158 1.5E-18 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 Gene3D G3DSA:2.40.110.10 160 289 3.7E-26 T 11-10-2018 dqs_2647 c2c73ac6679d012f267e989fa566e85a 595 Gene3D G3DSA:1.20.140.10 290 455 6.5E-50 T 11-10-2018 dqs_2334 96899706435738dd7a9f40133fdd3948 632 SUPERFAMILY SSF54631 171 287 9.6E-28 T 11-10-2018 dqs_2334 96899706435738dd7a9f40133fdd3948 632 SMART SM00116 242 290 6.0E-5 T 11-10-2018 IPR000644 CBS domain dqs_2334 96899706435738dd7a9f40133fdd3948 632 SMART SM00116 177 225 1.1 T 11-10-2018 IPR000644 CBS domain dqs_2334 96899706435738dd7a9f40133fdd3948 632 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 491 630 2.3E-40 T 11-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding dqs_2334 96899706435738dd7a9f40133fdd3948 632 Gene3D G3DSA:3.10.580.10 163 296 1.1E-30 T 11-10-2018 dqs_2334 96899706435738dd7a9f40133fdd3948 632 Gene3D G3DSA:2.60.120.10 12 159 1.3E-14 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_2334 96899706435738dd7a9f40133fdd3948 632 Pfam PF00027 Cyclic nucleotide-binding domain 45 128 9.8E-8 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_2334 96899706435738dd7a9f40133fdd3948 632 SUPERFAMILY SSF51206 15 153 4.71E-18 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_2334 96899706435738dd7a9f40133fdd3948 632 Pfam PF03445 Putative nucleotidyltransferase DUF294 315 454 1.9E-47 T 11-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 dqs_2334 96899706435738dd7a9f40133fdd3948 632 Pfam PF00571 CBS domain 171 221 4.1E-7 T 11-10-2018 IPR000644 CBS domain dqs_2334 96899706435738dd7a9f40133fdd3948 632 Pfam PF00571 CBS domain 235 288 2.6E-10 T 11-10-2018 IPR000644 CBS domain dqs_3138 ddf2895083b85374f33e353c9f6a8d05 273 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 6 262 5.1E-104 T 11-10-2018 IPR010247 N-formylglutamate deformylase dqs_3138 ddf2895083b85374f33e353c9f6a8d05 273 SUPERFAMILY SSF53187 2 266 2.45E-80 T 11-10-2018 dqs_3138 ddf2895083b85374f33e353c9f6a8d05 273 Gene3D G3DSA:3.40.630.40 2 268 4.5E-73 T 11-10-2018 dqs_3138 ddf2895083b85374f33e353c9f6a8d05 273 Pfam PF05013 N-formylglutamate amidohydrolase 14 235 2.5E-67 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase dqs_2073 89fac676e9c20cf9c54e99a74668d5c1 316 SUPERFAMILY SSF53850 25 315 1.64E-74 T 11-10-2018 dqs_2073 89fac676e9c20cf9c54e99a74668d5c1 316 Gene3D G3DSA:3.40.190.10 114 250 5.3E-98 T 11-10-2018 dqs_2073 89fac676e9c20cf9c54e99a74668d5c1 316 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 11 313 3.0E-111 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family dqs_2073 89fac676e9c20cf9c54e99a74668d5c1 316 Pfam PF16868 NMT1-like family 30 313 2.3E-92 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family dqs_2073 89fac676e9c20cf9c54e99a74668d5c1 316 Gene3D G3DSA:3.40.190.10 30 313 5.3E-98 T 11-10-2018 dqs_1757 2abf8615f7d27d2a828f4f8c5470797f 323 Pfam PF17188 MucB/RseB C-terminal domain 222 318 2.8E-22 T 11-10-2018 IPR033436 MucB/RseB, C-terminal dqs_1757 2abf8615f7d27d2a828f4f8c5470797f 323 Pfam PF03888 MucB/RseB N-terminal domain 27 202 3.3E-62 T 11-10-2018 IPR033434 MucB/RseB, N-terminal dqs_1757 2abf8615f7d27d2a828f4f8c5470797f 323 PIRSF PIRSF005427 1 323 7.1E-93 T 11-10-2018 IPR005588 MucB/RseB dqs_1757 2abf8615f7d27d2a828f4f8c5470797f 323 Gene3D G3DSA:2.50.20.10 28 202 5.4E-56 T 11-10-2018 dqs_1757 2abf8615f7d27d2a828f4f8c5470797f 323 Gene3D G3DSA:3.30.200.100 223 322 3.7E-16 T 11-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily dqs_0572 8532662ce0c77e9770fe611d086a12a5 500 SUPERFAMILY SSF53807 7 454 1.26E-141 T 11-10-2018 dqs_0572 8532662ce0c77e9770fe611d086a12a5 500 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 4 456 4.3E-210 T 11-10-2018 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0009399|GO:0065003 dqs_0572 8532662ce0c77e9770fe611d086a12a5 500 Gene3D G3DSA:3.40.50.12380 178 450 9.4E-114 T 11-10-2018 dqs_0572 8532662ce0c77e9770fe611d086a12a5 500 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 37 442 3.1E-109 T 11-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 dqs_0572 8532662ce0c77e9770fe611d086a12a5 500 Gene3D G3DSA:3.40.50.1980 24 177 3.2E-53 T 11-10-2018 dqs_0572 8532662ce0c77e9770fe611d086a12a5 500 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 122 136 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 dqs_0572 8532662ce0c77e9770fe611d086a12a5 500 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 55 62 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 dqs_0754 87589329474b95823cbc032339dfb130 721 Pfam PF02310 B12 binding domain 591 701 9.3E-14 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_0754 87589329474b95823cbc032339dfb130 721 SUPERFAMILY SSF52242 557 715 1.09E-55 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_0754 87589329474b95823cbc032339dfb130 721 Gene3D G3DSA:3.40.50.280 573 721 1.5E-48 T 11-10-2018 dqs_0754 87589329474b95823cbc032339dfb130 721 Gene3D G3DSA:3.20.20.240 6 568 5.2E-248 T 11-10-2018 dqs_0754 87589329474b95823cbc032339dfb130 721 SUPERFAMILY SSF51703 9 551 4.51E-229 T 11-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_0754 87589329474b95823cbc032339dfb130 721 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 35 556 2.3E-271 T 11-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_0754 87589329474b95823cbc032339dfb130 721 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 378 403 - T 11-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_0754 87589329474b95823cbc032339dfb130 721 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 588 717 2.0E-57 T 11-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_0754 87589329474b95823cbc032339dfb130 721 Pfam PF01642 Methylmalonyl-CoA mutase 37 549 7.9E-243 T 11-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 SMART SM00929 82 122 4.7E-15 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 Gene3D G3DSA:3.30.70.20 127 207 4.1E-6 T 11-10-2018 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 SUPERFAMILY SSF54292 5 123 3.44E-30 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 4 75 3.3E-18 T 11-10-2018 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 PIRSF PIRSF000309 1 233 3.0E-74 T 11-10-2018 IPR016214 NAD-reducing hydrogenase, HoxS gamma subunit MetaCyc: PWY-5382|MetaCyc: PWY-6758 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 97 109 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 82 121 4.8E-13 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 Pfam PF13459 4Fe-4S single cluster domain 138 204 1.8E-8 T 11-10-2018 dqs_1537 4ffd99c0478e25512c3c859c9a4237f2 234 Gene3D G3DSA:3.10.20.740 3 121 4.0E-34 T 11-10-2018 dqs_0096 3fc488d9248862626bdb206edecd669a 185 SUPERFAMILY SSF50249 127 184 2.06E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_0096 3fc488d9248862626bdb206edecd669a 185 SMART SM01185 67 120 7.0E-20 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 dqs_0096 3fc488d9248862626bdb206edecd669a 185 TIGRFAM TIGR00038 efp: translation elongation factor P 3 184 1.1E-65 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 dqs_0096 3fc488d9248862626bdb206edecd669a 185 Gene3D G3DSA:2.40.50.140 127 185 2.7E-27 T 11-10-2018 dqs_0096 3fc488d9248862626bdb206edecd669a 185 ProSitePatterns PS01275 Elongation factor P signature. 149 168 - T 11-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site dqs_0096 3fc488d9248862626bdb206edecd669a 185 Gene3D G3DSA:2.30.30.30 1 62 3.1E-19 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 dqs_0096 3fc488d9248862626bdb206edecd669a 185 Pfam PF09285 Elongation factor P, C-terminal 128 183 1.4E-23 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 dqs_0096 3fc488d9248862626bdb206edecd669a 185 SUPERFAMILY SSF50249 65 126 4.11E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_0096 3fc488d9248862626bdb206edecd669a 185 Gene3D G3DSA:2.40.50.140 64 126 3.7E-22 T 11-10-2018 dqs_0096 3fc488d9248862626bdb206edecd669a 185 SUPERFAMILY SSF50104 1 63 8.42E-17 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily dqs_0096 3fc488d9248862626bdb206edecd669a 185 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 120 1.3E-17 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 dqs_0096 3fc488d9248862626bdb206edecd669a 185 SMART SM00841 128 183 5.8E-27 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 dqs_0096 3fc488d9248862626bdb206edecd669a 185 PIRSF PIRSF005901 1 185 5.1E-59 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP dqs_0096 3fc488d9248862626bdb206edecd669a 185 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 1.7E-19 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like dqs_0096 3fc488d9248862626bdb206edecd669a 185 Hamap MF_00141 Elongation factor P [efp]. 1 184 47.75 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 SUPERFAMILY SSF51735 6 246 1.19E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 5.9E-27 T 11-10-2018 dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 6.2E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.2E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 6.2E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 6.2E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 6.2E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 6.2E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2012 907f08356e64bcd9a0374946e185ee3c 251 Gene3D G3DSA:3.40.50.720 1 247 8.3E-40 T 11-10-2018 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 151 3.0E-23 T 11-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 SUPERFAMILY SSF55257 5 229 1.18E-31 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 252 322 7.0E-35 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 SMART SM00662 21 230 4.7E-100 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 Gene3D G3DSA:3.30.1360.10 16 222 9.5E-81 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 246 304 1.3E-24 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 Gene3D G3DSA:1.10.150.20 241 324 6.7E-37 T 11-10-2018 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 27 224 5.0E-23 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 22 312 5.4E-106 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 Gene3D G3DSA:2.170.120.12 51 173 9.5E-81 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 SUPERFAMILY SSF56553 51 174 7.59E-39 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 3 313 35.406 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3530 ff3ea0baa4e3811cb58e3d2d6867550d 326 SUPERFAMILY SSF47789 247 320 1.31E-26 T 11-10-2018 dqs_2316 17f8a7c3386ded07ae42b7737466dee9 161 Gene3D G3DSA:3.30.70.860 3 160 4.6E-52 T 11-10-2018 IPR035571 UPF0234-like, C-terminal dqs_2316 17f8a7c3386ded07ae42b7737466dee9 161 SUPERFAMILY SSF89963 2 87 1.49E-25 T 11-10-2018 IPR036183 YajQ-like superfamily dqs_2316 17f8a7c3386ded07ae42b7737466dee9 161 Gene3D G3DSA:3.30.70.990 9 98 4.6E-52 T 11-10-2018 IPR035570 UPF0234, N-terminal dqs_2316 17f8a7c3386ded07ae42b7737466dee9 161 SUPERFAMILY SSF89963 88 161 2.43E-26 T 11-10-2018 IPR036183 YajQ-like superfamily dqs_2316 17f8a7c3386ded07ae42b7737466dee9 161 Pfam PF04461 Protein of unknown function (DUF520) 2 160 1.8E-60 T 11-10-2018 IPR007551 Protein of unknown function DUF520 dqs_2316 17f8a7c3386ded07ae42b7737466dee9 161 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 161 25.607 T 11-10-2018 IPR007551 Protein of unknown function DUF520 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 301 7.6E-59 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 SUPERFAMILY SSF51905 140 313 4.0E-28 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 100 109 1.1E-15 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 1.1E-15 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 167 1.1E-15 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 1.1E-15 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 Gene3D G3DSA:3.50.50.60 1 308 2.4E-101 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 160 1.8E-25 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 1.8E-25 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 1 14 1.8E-25 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 1.8E-25 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 1.8E-25 T 11-10-2018 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 SUPERFAMILY SSF51905 1 187 9.91E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2686 7365d70e2723344b0da3c6e3783283be 405 Pfam PF14759 Reductase C-terminal 320 401 9.5E-33 T 11-10-2018 IPR028202 Reductase, C-terminal dqs_2686 7365d70e2723344b0da3c6e3783283be 405 SUPERFAMILY SSF55424 313 402 1.92E-29 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_2686 7365d70e2723344b0da3c6e3783283be 405 Gene3D G3DSA:3.50.50.60 110 239 2.4E-101 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2686 7365d70e2723344b0da3c6e3783283be 405 Gene3D G3DSA:3.30.390.30 320 405 5.3E-35 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 504 574 6.0E-8 T 11-10-2018 IPR000014 PAS domain dqs_2601 b57e0e3c062036891c1374d16bd32574 822 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 320 446 5.0E-32 T 11-10-2018 IPR000014 PAS domain dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Gene3D G3DSA:3.30.565.10 668 817 2.4E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SUPERFAMILY SSF55785 436 565 2.44E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Pfam PF08447 PAS fold 476 561 1.2E-11 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Pfam PF08447 PAS fold 349 433 4.1E-17 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 708 816 3.4E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SMART SM00091 451 515 300.0 T 11-10-2018 IPR000014 PAS domain dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SMART SM00091 324 390 2.0E-11 T 11-10-2018 IPR000014 PAS domain dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Gene3D G3DSA:1.10.287.130 565 663 4.1E-16 T 11-10-2018 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Pfam PF00512 His Kinase A (phospho-acceptor) domain 600 666 3.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SMART SM00387 707 819 1.5E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Gene3D G3DSA:3.30.450.20 320 452 5.6E-31 T 11-10-2018 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SMART SM00388 598 666 1.2E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 PRINTS PR00344 Bacterial sensor protein C-terminal signature 803 816 6.2E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 PRINTS PR00344 Bacterial sensor protein C-terminal signature 746 760 6.2E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 PRINTS PR00344 Bacterial sensor protein C-terminal signature 764 774 6.2E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 PRINTS PR00344 Bacterial sensor protein C-terminal signature 779 797 6.2E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Gene3D G3DSA:3.30.450.20 453 519 3.3E-14 T 11-10-2018 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SMART SM00086 525 567 1.0E-6 T 11-10-2018 IPR001610 PAC motif dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SMART SM00086 397 439 2.1E-10 T 11-10-2018 IPR001610 PAC motif dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SUPERFAMILY SSF55874 667 816 5.5E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2601 b57e0e3c062036891c1374d16bd32574 822 Gene3D G3DSA:2.10.70.100 522 564 1.5E-11 T 11-10-2018 dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SUPERFAMILY SSF55785 311 436 5.15E-29 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2601 b57e0e3c062036891c1374d16bd32574 822 SUPERFAMILY SSF47384 582 666 2.16E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3887 53955d09d11cf537e0c081ad485e424b 499 Gene3D G3DSA:3.40.50.300 191 498 2.9E-53 T 11-10-2018 dqs_3887 53955d09d11cf537e0c081ad485e424b 499 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 393 3.3E-96 T 11-10-2018 IPR000523 Magnesium chelatase ChlI domain dqs_3887 53955d09d11cf537e0c081ad485e424b 499 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 1.1E-29 T 11-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain dqs_3887 53955d09d11cf537e0c081ad485e424b 499 SUPERFAMILY SSF54211 12 168 6.45E-30 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_3887 53955d09d11cf537e0c081ad485e424b 499 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 4.4E-44 T 11-10-2018 dqs_3887 53955d09d11cf537e0c081ad485e424b 499 SUPERFAMILY SSF52540 190 494 5.61E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3887 53955d09d11cf537e0c081ad485e424b 499 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 8 493 1.9E-184 T 11-10-2018 IPR004482 Mg chelatase-related protein dqs_3887 53955d09d11cf537e0c081ad485e424b 499 Gene3D G3DSA:3.30.230.10 35 168 1.6E-6 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_3887 53955d09d11cf537e0c081ad485e424b 499 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 4.5E-6 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 dqs_3887 53955d09d11cf537e0c081ad485e424b 499 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 340 352 4.5E-6 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 dqs_3887 53955d09d11cf537e0c081ad485e424b 499 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 288 302 4.5E-6 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 dqs_3887 53955d09d11cf537e0c081ad485e424b 499 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 316 329 4.5E-6 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 dqs_3887 53955d09d11cf537e0c081ad485e424b 499 SMART SM00382 210 370 7.3E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:3.30.70.1440 770 967 7.8E-138 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 533 1150 3.5E-212 T 11-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.6E-17 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.6E-17 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 1.6E-17 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 1.6E-17 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 SUPERFAMILY SSF82693 46 128 2.2E-20 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:3.30.70.1430 667 769 7.8E-138 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:1.20.1640.10 534 615 7.8E-138 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 SUPERFAMILY SSF82866 907 1145 9.42E-48 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:3.30.70.1320 135 326 3.2E-119 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 SUPERFAMILY SSF82693 137 325 3.4E-19 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 SUPERFAMILY SSF82714 822 907 2.09E-12 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Pfam PF00873 AcrB/AcrD/AcrF family 13 417 1.4E-100 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Pfam PF00873 AcrB/AcrD/AcrF family 527 1141 1.3E-126 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:3.30.2090.10 821 909 7.8E-138 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 SUPERFAMILY SSF82714 183 264 1.96E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:1.20.1640.10 15 417 3.2E-119 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:1.20.1640.10 616 1137 7.8E-138 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:3.30.70.1430 42 134 3.2E-119 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 SUPERFAMILY SSF82866 291 605 3.14E-35 T 11-10-2018 dqs_3090 88f762aa465169cac7839fde93dee8a4 1159 Gene3D G3DSA:3.30.2090.10 180 272 3.2E-119 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 Gene3D G3DSA:1.10.3090.10 122 370 3.0E-37 T 11-10-2018 dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 SUPERFAMILY SSF81891 121 356 4.05E-51 T 11-10-2018 dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 Gene3D G3DSA:3.30.460.10 1 121 1.0E-28 T 11-10-2018 dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 Hamap MF_01262 CCA-adding enzyme [cca]. 1 399 40.265 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 147 210 1.5E-12 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 405 50.679 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 Pfam PF01743 Poly A polymerase head domain 3 121 1.2E-17 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 SUPERFAMILY SSF81301 2 119 9.92E-32 T 11-10-2018 dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 Pfam PF01966 HD domain 227 307 6.5E-10 T 11-10-2018 IPR006674 HD domain dqs_0503 28e78faae52da4a7cd002a0d2d7dd3e3 412 PIRSF PIRSF000813 1 405 1.3E-182 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 204 221 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 362 380 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 157 175 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 99 117 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 78 97 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 427 443 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 250 269 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 133 150 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PRINTS PR00934 X-His dipeptidase (M25) signature 449 471 2.7E-67 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 Pfam PF07687 Peptidase dimerisation domain 206 288 1.9E-6 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 Gene3D G3DSA:3.40.630.10 364 483 6.2E-23 T 11-10-2018 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 Gene3D G3DSA:3.40.630.10 4 232 2.2E-56 T 11-10-2018 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 SUPERFAMILY SSF53187 9 479 3.71E-59 T 11-10-2018 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 PIRSF PIRSF016599 3 484 2.7E-173 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 481 5.5E-153 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 dqs_1374 7e9a180e3da13a3b04610a1d405c6a03 485 Pfam PF01546 Peptidase family M20/M25/M40 71 478 1.6E-17 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 dqs_0557 320ea080556cc6b8e5df7df0af88e32e 163 Pfam PF04319 NifZ domain 2 73 5.3E-30 T 11-10-2018 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 295 312 3.5E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 54 65 3.5E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 192 204 3.5E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 98 108 3.5E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 3.5E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 Gene3D G3DSA:2.40.160.10 11 356 7.0E-72 T 11-10-2018 IPR023614 Porin domain superfamily dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 PRINTS PR00184 Neisseria sp. porin signature 152 169 1.2E-7 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 PRINTS PR00184 Neisseria sp. porin signature 292 316 1.2E-7 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 PRINTS PR00184 Neisseria sp. porin signature 56 81 1.2E-7 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 SUPERFAMILY SSF56935 21 356 1.98E-62 T 11-10-2018 dqs_3429 4a06ca9ec9a0659f51e21903c648e789 356 Pfam PF13609 Gram-negative porin 7 320 5.8E-51 T 11-10-2018 dqs_3068 b7e49c57a31ca331a6843727c980d49b 83 Gene3D G3DSA:3.10.20.30 1 83 3.6E-12 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_3068 b7e49c57a31ca331a6843727c980d49b 83 Pfam PF02597 ThiS family 18 83 2.4E-11 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 dqs_3068 b7e49c57a31ca331a6843727c980d49b 83 SUPERFAMILY SSF54285 4 83 4.8E-12 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp dqs_2033 da0b0bbd0259467d7d01e0aab0e64d4c 307 Pfam PF04392 ABC transporter substrate binding protein 127 296 1.6E-10 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein dqs_2033 da0b0bbd0259467d7d01e0aab0e64d4c 307 Gene3D G3DSA:3.40.50.2300 127 259 3.5E-21 T 11-10-2018 dqs_1968 932e91545e00e4bd738073d066327c3a 463 Pfam PF04972 BON domain 240 307 4.0E-15 T 11-10-2018 IPR007055 BON domain dqs_3680 d3f2b56f45cae44eb12cf8199fc98369 322 Gene3D G3DSA:3.40.1010.10 1 117 8.7E-32 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 dqs_3680 d3f2b56f45cae44eb12cf8199fc98369 322 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 6 248 6.6E-97 T 11-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 dqs_3680 d3f2b56f45cae44eb12cf8199fc98369 322 SUPERFAMILY SSF53790 2 251 8.24E-58 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 dqs_3680 d3f2b56f45cae44eb12cf8199fc98369 322 Gene3D G3DSA:3.30.950.10 119 249 1.1E-52 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 dqs_3680 d3f2b56f45cae44eb12cf8199fc98369 322 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 215 3.8E-38 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 Gene3D G3DSA:3.40.50.300 4 279 4.9E-60 T 11-10-2018 dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 SMART SM00382 26 238 8.2E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 SMART SM00382 348 530 2.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 Pfam PF12848 ABC transporter 224 305 1.0E-21 T 11-10-2018 IPR032781 ABC-transporter extension domain dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 Pfam PF00005 ABC transporter 18 184 6.7E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 Pfam PF00005 ABC transporter 340 477 2.6E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 SUPERFAMILY SSF52540 7 237 1.39E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 Gene3D G3DSA:3.40.50.300 285 540 1.0E-53 T 11-10-2018 dqs_3930 b56a357c2cc2a329e6a96388cda60644 541 SUPERFAMILY SSF52540 312 534 2.74E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1751 10e772ef12dc5155de03646a4bee2280 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.69 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 dqs_1751 10e772ef12dc5155de03646a4bee2280 79 SUPERFAMILY SSF47336 1 77 1.22E-24 T 11-10-2018 IPR036736 ACP-like superfamily dqs_1751 10e772ef12dc5155de03646a4bee2280 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site dqs_1751 10e772ef12dc5155de03646a4bee2280 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 77 9.0E-4 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 dqs_1751 10e772ef12dc5155de03646a4bee2280 79 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.1E-17 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain dqs_1751 10e772ef12dc5155de03646a4bee2280 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 75 7.4E-36 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 dqs_1751 10e772ef12dc5155de03646a4bee2280 79 Gene3D G3DSA:1.10.1200.10 1 77 4.8E-31 T 11-10-2018 IPR036736 ACP-like superfamily dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 SUPERFAMILY SSF64518 129 659 2.48E-33 T 11-10-2018 dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 608 659 9.2E-6 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 335 2.3E-77 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 PRINTS PR01005 Flagellar hook-associated protein signature 123 143 2.8E-22 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 PRINTS PR01005 Flagellar hook-associated protein signature 49 71 2.8E-22 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 PRINTS PR01005 Flagellar hook-associated protein signature 405 422 2.8E-22 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 PRINTS PR01005 Flagellar hook-associated protein signature 156 180 2.8E-22 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 PRINTS PR01005 Flagellar hook-associated protein signature 260 282 2.8E-22 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 dqs_2866 7944cf1e365e69360c6bbad414df1abb 663 PRINTS PR01005 Flagellar hook-associated protein signature 11 34 2.8E-22 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 dqs_1993 efd3891d97a5c5792519e5429093ec41 105 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 82 7.5E-16 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_1993 efd3891d97a5c5792519e5429093ec41 105 Gene3D G3DSA:3.10.20.30 3 96 6.1E-21 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_1993 efd3891d97a5c5792519e5429093ec41 105 SUPERFAMILY SSF54292 3 91 3.41E-21 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_1993 efd3891d97a5c5792519e5429093ec41 105 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 6.3E-44 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 SUPERFAMILY SSF53901 271 392 6.29E-42 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 Gene3D G3DSA:3.40.47.10 8 276 3.6E-139 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 391 1.6E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 PIRSF PIRSF000429 1 393 2.0E-117 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 Pfam PF00108 Thiolase, N-terminal domain 6 261 9.9E-78 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 Gene3D G3DSA:3.40.47.10 129 389 3.6E-139 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2305 13fe9cd4f6627f914dcf8f99b035312b 393 SUPERFAMILY SSF53901 5 268 2.53E-73 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 SUPERFAMILY SSF90123 9 324 6.8E-72 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 Pfam PF00005 ABC transporter 356 505 1.2E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 Gene3D G3DSA:3.40.50.300 326 574 4.1E-94 T 11-10-2018 dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 Pfam PF00664 ABC transporter transmembrane region 23 292 2.9E-47 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 SUPERFAMILY SSF52540 332 572 8.67E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 8 571 3.8E-210 T 11-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 SMART SM00382 365 551 2.2E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2446 c84129aba531c9fe04d1213c504bdbaa 588 Gene3D G3DSA:1.20.1560.10 1 325 7.5E-77 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_2045 384d1f72bda557a9e5cad0eda0319f7e 254 Pfam PF00561 alpha/beta hydrolase fold 10 240 4.9E-19 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2045 384d1f72bda557a9e5cad0eda0319f7e 254 Gene3D G3DSA:3.40.50.1820 3 251 2.0E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2045 384d1f72bda557a9e5cad0eda0319f7e 254 SUPERFAMILY SSF53474 10 248 5.9E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2045 384d1f72bda557a9e5cad0eda0319f7e 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 198 212 7.2E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2045 384d1f72bda557a9e5cad0eda0319f7e 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 73 86 7.2E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2045 384d1f72bda557a9e5cad0eda0319f7e 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 87 100 7.2E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2258 dcd2c1505bf135e60ad56a06168f7883 182 SMART SM01322 1 175 2.1E-124 T 11-10-2018 IPR009822 YaeQ dqs_2258 dcd2c1505bf135e60ad56a06168f7883 182 PIRSF PIRSF011484 1 178 1.2E-73 T 11-10-2018 IPR009822 YaeQ dqs_2258 dcd2c1505bf135e60ad56a06168f7883 182 SUPERFAMILY SSF52980 2 177 6.97E-74 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 dqs_2258 dcd2c1505bf135e60ad56a06168f7883 182 Gene3D G3DSA:3.10.640.10 1 181 3.2E-79 T 11-10-2018 IPR038590 YaeQ superfamily dqs_2258 dcd2c1505bf135e60ad56a06168f7883 182 Pfam PF07152 YaeQ protein 1 172 4.0E-79 T 11-10-2018 IPR009822 YaeQ dqs_1325 b7cb1d9f1a4abe7ec4dd88bf45435edd 330 SMART SM00833 232 326 1.6E-14 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal dqs_1325 b7cb1d9f1a4abe7ec4dd88bf45435edd 330 SUPERFAMILY SSF52540 7 198 5.85E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1325 b7cb1d9f1a4abe7ec4dd88bf45435edd 330 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 184 2.3E-55 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain dqs_1325 b7cb1d9f1a4abe7ec4dd88bf45435edd 330 SUPERFAMILY SSF90002 234 325 2.62E-26 T 11-10-2018 dqs_1325 b7cb1d9f1a4abe7ec4dd88bf45435edd 330 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 235 325 1.6E-23 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal dqs_1325 b7cb1d9f1a4abe7ec4dd88bf45435edd 330 Gene3D G3DSA:3.40.50.300 6 203 4.8E-68 T 11-10-2018 dqs_1325 b7cb1d9f1a4abe7ec4dd88bf45435edd 330 Gene3D G3DSA:3.30.1220.10 215 327 3.9E-32 T 11-10-2018 IPR036627 CobW-like, C-terminal domain superfamily dqs_2640 8ebd2f19c79f2377d3329e36f2dc52e7 203 Gene3D G3DSA:1.10.357.10 8 203 4.8E-43 T 11-10-2018 dqs_2640 8ebd2f19c79f2377d3329e36f2dc52e7 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 64 2.1E-16 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2640 8ebd2f19c79f2377d3329e36f2dc52e7 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 3.9E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2640 8ebd2f19c79f2377d3329e36f2dc52e7 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 3.9E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2640 8ebd2f19c79f2377d3329e36f2dc52e7 203 SUPERFAMILY SSF48498 88 196 8.9E-10 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_2640 8ebd2f19c79f2377d3329e36f2dc52e7 203 SUPERFAMILY SSF46689 6 88 2.79E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2062 44bd6e5aa5cb2f8a2d27f8a647b9b520 238 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 44.713 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 dqs_2062 44bd6e5aa5cb2f8a2d27f8a647b9b520 238 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 7.1E-100 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 dqs_2062 44bd6e5aa5cb2f8a2d27f8a647b9b520 238 PIRSF PIRSF005650 1 238 9.2E-92 T 11-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 dqs_2062 44bd6e5aa5cb2f8a2d27f8a647b9b520 238 Pfam PF00696 Amino acid kinase family 7 215 9.7E-29 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 dqs_2062 44bd6e5aa5cb2f8a2d27f8a647b9b520 238 SUPERFAMILY SSF53633 5 237 7.07E-72 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_2062 44bd6e5aa5cb2f8a2d27f8a647b9b520 238 Gene3D G3DSA:3.40.1160.10 2 238 2.4E-79 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_3796 7436652e4a75f7b5df91a6ce1cf11324 790 SUPERFAMILY SSF56601 211 723 5.35E-125 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_3796 7436652e4a75f7b5df91a6ce1cf11324 790 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 706 8.0E-188 T 11-10-2018 dqs_3796 7436652e4a75f7b5df91a6ce1cf11324 790 Pfam PF17092 Penicillin-binding protein OB-like domain 319 420 2.7E-18 T 11-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_3796 7436652e4a75f7b5df91a6ce1cf11324 790 Pfam PF00905 Penicillin binding protein transpeptidase domain 423 692 2.0E-40 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 dqs_3796 7436652e4a75f7b5df91a6ce1cf11324 790 Pfam PF00912 Transglycosylase 55 229 1.3E-65 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_3796 7436652e4a75f7b5df91a6ce1cf11324 790 SUPERFAMILY SSF53955 42 250 1.72E-76 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_3796 7436652e4a75f7b5df91a6ce1cf11324 790 Gene3D G3DSA:2.40.50.140 348 418 1.1E-18 T 11-10-2018 dqs_3796 7436652e4a75f7b5df91a6ce1cf11324 790 Gene3D G3DSA:1.10.3810.10 49 244 7.4E-78 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 PIRSF PIRSF000151 1 419 4.3E-174 T 11-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 8 408 4.1E-147 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 SUPERFAMILY SSF53720 3 418 5.5E-116 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 Gene3D G3DSA:3.40.605.10 8 415 3.9E-167 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 418 41.162 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 325 346 - T 11-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 Gene3D G3DSA:3.40.309.10 221 376 3.9E-167 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 Pfam PF00171 Aldehyde dehydrogenase family 311 375 2.3E-8 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_3355 a5b109ee6aca18ebc1c192b8090885a6 419 Pfam PF00171 Aldehyde dehydrogenase family 6 272 2.8E-14 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_1375 fed9f854e3a8c8f3e7322d1e623692a4 175 Gene3D G3DSA:3.10.310.50 16 172 3.7E-43 T 11-10-2018 dqs_1375 fed9f854e3a8c8f3e7322d1e623692a4 175 Pfam PF04536 TPM domain 21 151 2.3E-12 T 11-10-2018 IPR007621 TPM domain dqs_2858 56169896394c2d01abe6e68d1014727a 336 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 9.1E-26 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 dqs_2858 56169896394c2d01abe6e68d1014727a 336 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 9.1E-26 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 dqs_2858 56169896394c2d01abe6e68d1014727a 336 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 9.1E-26 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 dqs_2858 56169896394c2d01abe6e68d1014727a 336 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 9.1E-26 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 dqs_2858 56169896394c2d01abe6e68d1014727a 336 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 320 2.3E-19 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) dqs_2858 56169896394c2d01abe6e68d1014727a 336 PIRSF PIRSF002888 2 329 2.4E-92 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 dqs_2858 56169896394c2d01abe6e68d1014727a 336 SUPERFAMILY SSF101801 250 324 5.1E-13 T 11-10-2018 IPR036429 SpoA-like superfamily dqs_2858 56169896394c2d01abe6e68d1014727a 336 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 318 2.7E-103 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 dqs_2858 56169896394c2d01abe6e68d1014727a 336 Pfam PF02154 Flagellar motor switch protein FliM 38 230 1.1E-68 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 dqs_2858 56169896394c2d01abe6e68d1014727a 336 SUPERFAMILY SSF103039 4 230 1.23E-19 T 11-10-2018 IPR028976 CheC-like superfamily dqs_2858 56169896394c2d01abe6e68d1014727a 336 Gene3D G3DSA:3.40.1550.10 44 231 9.3E-56 T 11-10-2018 IPR028976 CheC-like superfamily dqs_3055 344da54973ddb26f481841fd48c6de7e 337 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 2.0E-4 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3055 344da54973ddb26f481841fd48c6de7e 337 SUPERFAMILY SSF54523 13 76 6.04E-5 T 11-10-2018 dqs_3055 344da54973ddb26f481841fd48c6de7e 337 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3055 344da54973ddb26f481841fd48c6de7e 337 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 31 1.5E-6 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 306 479 4.1E-34 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 Gene3D G3DSA:3.30.450.20 6 126 2.5E-27 T 11-10-2018 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 265 294 2.7E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 426 455 2.7E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 407 2.7E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 SMART SM00283 251 512 9.0E-58 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 SUPERFAMILY SSF58104 216 512 1.31E-58 T 11-10-2018 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 SUPERFAMILY SSF55785 8 101 3.14E-28 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 Pfam PF08447 PAS fold 18 101 5.4E-15 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 Gene3D G3DSA:1.10.287.950 184 514 2.2E-60 T 11-10-2018 dqs_2332 6d2ed954422349ee940aaca5c4ea072c 515 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 101 4.1E-16 T 11-10-2018 IPR000014 PAS domain dqs_1513 e62c0b9f5372eaa3992bdac1cfe572e1 346 Gene3D G3DSA:3.40.190.10 101 277 1.4E-124 T 11-10-2018 dqs_1513 e62c0b9f5372eaa3992bdac1cfe572e1 346 PIRSF PIRSF002756 4 338 8.9E-109 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 dqs_1513 e62c0b9f5372eaa3992bdac1cfe572e1 346 SUPERFAMILY SSF53850 26 336 1.36E-101 T 11-10-2018 dqs_1513 e62c0b9f5372eaa3992bdac1cfe572e1 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 27 335 3.3E-129 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 dqs_1513 e62c0b9f5372eaa3992bdac1cfe572e1 346 Gene3D G3DSA:3.40.190.10 27 324 1.4E-124 T 11-10-2018 dqs_1513 e62c0b9f5372eaa3992bdac1cfe572e1 346 Pfam PF12849 PBP superfamily domain 23 306 7.4E-67 T 11-10-2018 IPR024370 PBP domain dqs_1615 a7deb8061597500767b351dd934cdae9 613 Gene3D G3DSA:3.30.565.10 453 612 4.4E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1615 a7deb8061597500767b351dd934cdae9 613 SMART SM00086 203 243 24.0 T 11-10-2018 IPR001610 PAC motif dqs_1615 a7deb8061597500767b351dd934cdae9 613 SMART SM00086 324 364 0.33 T 11-10-2018 IPR001610 PAC motif dqs_1615 a7deb8061597500767b351dd934cdae9 613 SMART SM00086 76 116 22.0 T 11-10-2018 IPR001610 PAC motif dqs_1615 a7deb8061597500767b351dd934cdae9 613 SUPERFAMILY SSF55785 259 373 1.23E-31 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1615 a7deb8061597500767b351dd934cdae9 613 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 498 612 4.5E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1615 a7deb8061597500767b351dd934cdae9 613 SMART SM00091 248 314 1.4E-12 T 11-10-2018 IPR000014 PAS domain dqs_1615 a7deb8061597500767b351dd934cdae9 613 SMART SM00091 4 70 1.8E-7 T 11-10-2018 IPR000014 PAS domain dqs_1615 a7deb8061597500767b351dd934cdae9 613 SMART SM00091 127 193 5.2E-10 T 11-10-2018 IPR000014 PAS domain dqs_1615 a7deb8061597500767b351dd934cdae9 613 Gene3D G3DSA:3.30.450.20 243 366 2.3E-33 T 11-10-2018 dqs_1615 a7deb8061597500767b351dd934cdae9 613 SUPERFAMILY SSF55785 138 251 2.65E-24 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1615 a7deb8061597500767b351dd934cdae9 613 Gene3D G3DSA:3.30.450.20 13 119 1.5E-17 T 11-10-2018 dqs_1615 a7deb8061597500767b351dd934cdae9 613 SMART SM00387 498 613 6.0E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1615 a7deb8061597500767b351dd934cdae9 613 SUPERFAMILY SSF47384 368 453 5.69E-24 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1615 a7deb8061597500767b351dd934cdae9 613 Gene3D G3DSA:3.30.450.20 120 240 2.6E-26 T 11-10-2018 dqs_1615 a7deb8061597500767b351dd934cdae9 613 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 610 5.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1615 a7deb8061597500767b351dd934cdae9 613 PRINTS PR00344 Bacterial sensor protein C-terminal signature 556 566 5.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1615 a7deb8061597500767b351dd934cdae9 613 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 552 5.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1615 a7deb8061597500767b351dd934cdae9 613 PRINTS PR00344 Bacterial sensor protein C-terminal signature 573 591 5.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1615 a7deb8061597500767b351dd934cdae9 613 Pfam PF13426 PAS domain 258 363 6.5E-18 T 11-10-2018 IPR000014 PAS domain dqs_1615 a7deb8061597500767b351dd934cdae9 613 SUPERFAMILY SSF55785 15 122 1.16E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1615 a7deb8061597500767b351dd934cdae9 613 Pfam PF00989 PAS fold 128 240 5.5E-12 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_1615 a7deb8061597500767b351dd934cdae9 613 Pfam PF00989 PAS fold 7 100 1.6E-13 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_1615 a7deb8061597500767b351dd934cdae9 613 Pfam PF00512 His Kinase A (phospho-acceptor) domain 385 452 1.3E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1615 a7deb8061597500767b351dd934cdae9 613 SUPERFAMILY SSF55874 441 610 2.23E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1615 a7deb8061597500767b351dd934cdae9 613 SMART SM00388 384 452 3.4E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1615 a7deb8061597500767b351dd934cdae9 613 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 247 371 6.1E-29 T 11-10-2018 IPR000014 PAS domain dqs_1615 a7deb8061597500767b351dd934cdae9 613 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 7 122 3.9E-19 T 11-10-2018 IPR000014 PAS domain dqs_1615 a7deb8061597500767b351dd934cdae9 613 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 126 249 7.5E-24 T 11-10-2018 IPR000014 PAS domain dqs_1615 a7deb8061597500767b351dd934cdae9 613 Gene3D G3DSA:1.10.287.130 370 452 3.0E-25 T 11-10-2018 dqs_4029 0a81898a890301dbf8e15fed1c9d4d93 256 SMART SM00332 1 242 2.9E-5 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_4029 0a81898a890301dbf8e15fed1c9d4d93 256 SUPERFAMILY SSF81606 4 243 1.83E-44 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_4029 0a81898a890301dbf8e15fed1c9d4d93 256 SMART SM00331 9 244 8.5E-14 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_4029 0a81898a890301dbf8e15fed1c9d4d93 256 Gene3D G3DSA:3.60.40.10 2 244 9.9E-46 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_4029 0a81898a890301dbf8e15fed1c9d4d93 256 Pfam PF13672 Protein phosphatase 2C 10 207 1.5E-17 T 11-10-2018 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 SUPERFAMILY SSF47928 3 106 9.81E-25 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 19.114 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 4.5E-43 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 175 1.4E-52 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 Gene3D G3DSA:1.10.520.20 2 106 1.6E-30 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 2.7E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 2.7E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 2.7E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 2.7E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0165 3ee08241017d87d717e91f321c5fdc08 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 2.7E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SMART SM00267 690 862 1.4E-54 T 11-10-2018 IPR000160 GGDEF domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SUPERFAMILY SSF141868 880 1121 3.27E-74 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Pfam PF08448 PAS fold 459 560 1.2E-7 T 11-10-2018 IPR013656 PAS fold-4 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SMART SM00086 519 559 54.0 T 11-10-2018 IPR001610 PAC motif dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SMART SM00086 648 690 0.068 T 11-10-2018 IPR001610 PAC motif dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Pfam PF00909 Ammonium Transporter Family 9 400 1.8E-111 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Gene3D G3DSA:3.20.20.450 863 1122 1.7E-89 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Gene3D G3DSA:1.10.3430.10 1 414 9.8E-128 T 11-10-2018 IPR029020 Ammonium/urea transporter dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SUPERFAMILY SSF111352 5 383 1.22E-98 T 11-10-2018 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Gene3D G3DSA:3.30.450.20 459 568 1.9E-14 T 11-10-2018 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Pfam PF00990 Diguanylate cyclase, GGDEF domain 701 858 5.5E-38 T 11-10-2018 IPR000160 GGDEF domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 ProSitePatterns PS01219 Ammonium transporters signature. 159 184 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Gene3D G3DSA:3.30.70.270 690 862 1.4E-50 T 11-10-2018 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 699 861 8.4E-41 T 11-10-2018 IPR000160 GGDEF domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Gene3D G3DSA:3.30.450.20 579 688 8.9E-24 T 11-10-2018 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SUPERFAMILY SSF55785 461 568 1.15E-14 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SUPERFAMILY SSF55785 556 688 5.23E-22 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Pfam PF00563 EAL domain 881 1115 4.3E-66 T 11-10-2018 IPR001633 EAL domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 453 566 3.9E-12 T 11-10-2018 IPR000014 PAS domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 578 697 8.3E-16 T 11-10-2018 IPR000014 PAS domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SMART SM00091 571 637 4.8E-7 T 11-10-2018 IPR000014 PAS domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SMART SM00091 450 515 0.0042 T 11-10-2018 IPR000014 PAS domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SMART SM00052 874 1120 4.1E-74 T 11-10-2018 IPR001633 EAL domain dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 SUPERFAMILY SSF55073 706 864 5.65E-46 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 TIGRFAM TIGR00836 amt: ammonium transporter 7 400 4.4E-114 T 11-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 dqs_3019 7c9a9eeeb57d50ca63ef81e4645f0a0d 1129 Pfam PF00989 PAS fold 577 687 1.2E-13 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_0126 470dd36bb6cf4c7ac50e0efb8ba931b1 498 SUPERFAMILY SSF53167 15 498 1.96E-151 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 dqs_0126 470dd36bb6cf4c7ac50e0efb8ba931b1 498 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 18 172 1.2E-53 T 11-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 dqs_0126 470dd36bb6cf4c7ac50e0efb8ba931b1 498 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 17 498 6.6E-194 T 11-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 dqs_0126 470dd36bb6cf4c7ac50e0efb8ba931b1 498 Gene3D G3DSA:3.40.50.1580 178 498 1.2E-101 T 11-10-2018 dqs_0126 470dd36bb6cf4c7ac50e0efb8ba931b1 498 Gene3D G3DSA:3.30.1730.10 12 177 5.8E-50 T 11-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 dqs_0126 470dd36bb6cf4c7ac50e0efb8ba931b1 498 Pfam PF01048 Phosphorylase superfamily 281 444 1.1E-12 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 dqs_0126 470dd36bb6cf4c7ac50e0efb8ba931b1 498 Hamap MF_01932 AMP nucleosidase [amn]. 9 498 61.901 T 11-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 dqs_3368 a32735b6b9813caa0f62f8aa4bcc861a 256 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 8 217 2.2E-23 T 11-10-2018 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 266 417 1.8E-31 T 11-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 Hamap MF_00303 Trigger factor [tig]. 4 423 19.666 T 11-10-2018 IPR005215 Trigger factor GO:0015031 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 SUPERFAMILY SSF102735 8 132 1.06E-31 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 TIGRFAM TIGR00115 tig: trigger factor 14 417 5.4E-134 T 11-10-2018 IPR005215 Trigger factor GO:0015031 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 Gene3D G3DSA:3.30.70.1050 1 118 4.7E-31 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 SUPERFAMILY SSF54534 92 244 5.5E-33 T 11-10-2018 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 Gene3D G3DSA:1.10.3120.10 119 421 5.0E-92 T 11-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 240 9.6E-14 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 SUPERFAMILY SSF109998 251 434 7.06E-46 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 Gene3D G3DSA:3.10.50.40 153 249 5.0E-92 T 11-10-2018 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 Pfam PF05697 Bacterial trigger factor protein (TF) 9 145 1.2E-32 T 11-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 dqs_2201 8fa23db71d0820d70f0fdb2b08ab53cd 437 PIRSF PIRSF003095 4 437 9.8E-117 T 11-10-2018 IPR005215 Trigger factor GO:0015031 dqs_3593 13fa6fe64450504dbdee4990193136d4 206 SUPERFAMILY SSF51391 5 200 6.41E-59 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 dqs_3593 13fa6fe64450504dbdee4990193136d4 206 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 8 196 6.1E-54 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 dqs_3593 13fa6fe64450504dbdee4990193136d4 206 Gene3D G3DSA:3.20.20.70 1 206 2.3E-58 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3593 13fa6fe64450504dbdee4990193136d4 206 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 6 206 25.023 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 dqs_3593 13fa6fe64450504dbdee4990193136d4 206 Pfam PF02581 Thiamine monophosphate synthase 8 188 9.2E-55 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 dqs_0112 2ba0d38e85f4b949076676611b3db5a0 175 Gene3D G3DSA:3.40.30.10 36 164 5.9E-27 T 11-10-2018 dqs_0112 2ba0d38e85f4b949076676611b3db5a0 175 Pfam PF08534 Redoxin 43 137 2.0E-13 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 dqs_0112 2ba0d38e85f4b949076676611b3db5a0 175 SUPERFAMILY SSF52833 44 161 1.9E-25 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0112 2ba0d38e85f4b949076676611b3db5a0 175 ProSitePatterns PS00194 Thioredoxin family active site. 54 72 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_4008 03f55cdd1649cac9c9f19c35611c3dbe 127 Gene3D G3DSA:1.10.760.10 26 126 9.5E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_4008 03f55cdd1649cac9c9f19c35611c3dbe 127 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 46 119 2.4E-16 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_4008 03f55cdd1649cac9c9f19c35611c3dbe 127 SUPERFAMILY SSF46626 7 125 8.04E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1769 943175093e79819a395359f6af49d410 243 Pfam PF02565 Recombination protein O C terminal 88 235 7.9E-23 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 dqs_1769 943175093e79819a395359f6af49d410 243 SUPERFAMILY SSF57863 91 226 7.32E-11 T 11-10-2018 IPR037278 ARFGAP/RecO-like zinc finger dqs_1769 943175093e79819a395359f6af49d410 243 TIGRFAM TIGR00613 reco: DNA repair protein RecO 12 240 1.7E-20 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 dqs_1769 943175093e79819a395359f6af49d410 243 Gene3D G3DSA:2.40.50.140 7 81 1.2E-29 T 11-10-2018 dqs_1769 943175093e79819a395359f6af49d410 243 SUPERFAMILY SSF50249 9 80 4.8E-13 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1769 943175093e79819a395359f6af49d410 243 Gene3D G3DSA:1.20.1440.120 85 242 4.0E-47 T 11-10-2018 dqs_1769 943175093e79819a395359f6af49d410 243 Hamap MF_00201 DNA repair protein RecO [recO]. 6 240 23.176 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 dqs_1769 943175093e79819a395359f6af49d410 243 Pfam PF11967 Recombination protein O N terminal 9 79 9.3E-21 T 11-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 Pfam PF11104 Type IV pilus assembly protein PilM; 16 356 1.9E-147 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 Gene3D G3DSA:3.30.420.40 193 320 4.9E-92 T 11-10-2018 dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 13 356 2.0E-103 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 SMART SM00842 14 182 1.0E-4 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 SUPERFAMILY SSF53067 14 179 2.75E-14 T 11-10-2018 dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 Gene3D G3DSA:3.30.420.40 16 354 4.9E-92 T 11-10-2018 dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 Gene3D G3DSA:3.30.1490.300 91 150 4.9E-92 T 11-10-2018 dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 SUPERFAMILY SSF53067 195 354 2.23E-27 T 11-10-2018 dqs_3795 cb57d2f211630c14b131157fa90fb35e 358 PIRSF PIRSF019169 2 357 1.5E-133 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM dqs_2215 5d75db98249f3bdb85fab5fc6a22b3dc 251 Gene3D G3DSA:1.10.10.10 106 247 1.6E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2215 5d75db98249f3bdb85fab5fc6a22b3dc 251 SUPERFAMILY SSF46894 169 243 8.16E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_2215 5d75db98249f3bdb85fab5fc6a22b3dc 251 ProSitePatterns PS00622 LuxR-type HTH domain signature. 197 224 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2215 5d75db98249f3bdb85fab5fc6a22b3dc 251 Pfam PF00196 Bacterial regulatory proteins, luxR family 182 234 5.8E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2215 5d75db98249f3bdb85fab5fc6a22b3dc 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 8.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2215 5d75db98249f3bdb85fab5fc6a22b3dc 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 8.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2215 5d75db98249f3bdb85fab5fc6a22b3dc 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 8.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2215 5d75db98249f3bdb85fab5fc6a22b3dc 251 SMART SM00421 180 237 1.7E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1016 f776199ddcc73b1a80c38a78897c43ac 419 Gene3D G3DSA:3.40.190.10 136 408 8.1E-125 T 11-10-2018 dqs_1016 f776199ddcc73b1a80c38a78897c43ac 419 Gene3D G3DSA:3.40.190.10 50 403 8.1E-125 T 11-10-2018 dqs_1016 f776199ddcc73b1a80c38a78897c43ac 419 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 10 34 2.7E-6 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_1016 f776199ddcc73b1a80c38a78897c43ac 419 SUPERFAMILY SSF53850 46 282 3.77E-29 T 11-10-2018 dqs_1016 f776199ddcc73b1a80c38a78897c43ac 419 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 11 39 2.7E-6 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_1016 f776199ddcc73b1a80c38a78897c43ac 419 Pfam PF13379 NMT1-like family 43 293 9.1E-104 T 11-10-2018 dqs_0032 819b956b11839899085a1202da42c082 735 Gene3D G3DSA:3.90.1170.50 189 312 1.3E-15 T 11-10-2018 dqs_0032 819b956b11839899085a1202da42c082 735 SMART SM01008 216 294 2.9E-25 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead dqs_0032 819b956b11839899085a1202da42c082 735 Gene3D G3DSA:3.30.365.10 346 441 9.5E-59 T 11-10-2018 dqs_0032 819b956b11839899085a1202da42c082 735 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 216 298 3.1E-4 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead dqs_0032 819b956b11839899085a1202da42c082 735 Gene3D G3DSA:3.30.365.10 45 188 7.4E-22 T 11-10-2018 dqs_0032 819b956b11839899085a1202da42c082 735 PIRSF PIRSF036389 1 735 4.2E-272 T 11-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related dqs_0032 819b956b11839899085a1202da42c082 735 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 319 557 2.7E-29 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 dqs_0032 819b956b11839899085a1202da42c082 735 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 48 199 2.3E-13 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 dqs_0032 819b956b11839899085a1202da42c082 735 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 600 684 1.5E-13 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 dqs_0032 819b956b11839899085a1202da42c082 735 SUPERFAMILY SSF56003 48 250 7.67E-47 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 dqs_0032 819b956b11839899085a1202da42c082 735 Gene3D G3DSA:3.30.365.10 322 556 9.5E-59 T 11-10-2018 dqs_0032 819b956b11839899085a1202da42c082 735 SUPERFAMILY SSF56003 317 729 5.36E-121 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 dqs_0032 819b956b11839899085a1202da42c082 735 Gene3D G3DSA:3.30.365.10 583 733 1.2E-38 T 11-10-2018 dqs_2252 9d3ac056a8e507ad40ac6f4ba9ab65d1 291 Gene3D G3DSA:1.10.1580.10 167 258 1.5E-19 T 11-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily dqs_2252 9d3ac056a8e507ad40ac6f4ba9ab65d1 291 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 1 265 6.8E-85 T 11-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis dqs_2252 9d3ac056a8e507ad40ac6f4ba9ab65d1 291 SUPERFAMILY SSF52540 3 179 8.36E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2252 9d3ac056a8e507ad40ac6f4ba9ab65d1 291 Gene3D G3DSA:3.40.50.300 3 166 2.6E-37 T 11-10-2018 dqs_2252 9d3ac056a8e507ad40ac6f4ba9ab65d1 291 Pfam PF01926 50S ribosome-binding GTPase 110 170 3.6E-14 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_2252 9d3ac056a8e507ad40ac6f4ba9ab65d1 291 PIRSF PIRSF006230 1 270 5.9E-79 T 11-10-2018 IPR016478 GTPase, MTG1 dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 Pfam PF00529 HlyD membrane-fusion protein of T1SS 27 410 1.9E-10 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 Gene3D G3DSA:2.40.420.20 351 442 1.5E-25 T 11-10-2018 dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 Gene3D G3DSA:2.40.30.170 271 345 3.7E-43 T 11-10-2018 dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 SUPERFAMILY SSF111369 129 350 4.71E-15 T 11-10-2018 dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 Gene3D G3DSA:2.40.50.320 443 525 8.0E-19 T 11-10-2018 dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 Gene3D G3DSA:2.40.50.100 130 270 3.7E-43 T 11-10-2018 dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 Pfam PF11604 Copper binding periplasmic protein CusF 449 515 3.8E-22 T 11-10-2018 IPR021647 Copper binding periplasmic protein CusF dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 115 343 4.4E-70 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 104 418 4.7E-46 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_3089 1a34e7acef91a2048928b8ae23acefa3 531 Gene3D G3DSA:1.10.287.470 166 226 3.7E-43 T 11-10-2018 dqs_3273 b4ec978a7238fa2e7f47a6781b3d540f 165 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 95 106 - T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 dqs_3273 b4ec978a7238fa2e7f47a6781b3d540f 165 SUPERFAMILY SSF55083 5 154 2.35E-48 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 dqs_3273 b4ec978a7238fa2e7f47a6781b3d540f 165 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 7 140 4.1E-39 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 dqs_3273 b4ec978a7238fa2e7f47a6781b3d540f 165 Gene3D G3DSA:3.30.70.560 5 164 1.4E-50 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 dqs_3273 b4ec978a7238fa2e7f47a6781b3d540f 165 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 8 140 1.8E-34 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 dqs_1682 f9c28824e578816ad515aa65a9fc7cc5 401 Gene3D G3DSA:3.40.50.300 48 218 3.2E-21 T 11-10-2018 dqs_1682 f9c28824e578816ad515aa65a9fc7cc5 401 SUPERFAMILY SSF52540 86 235 4.89E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1682 f9c28824e578816ad515aa65a9fc7cc5 401 Pfam PF03969 AFG1-like ATPase 46 395 9.0E-129 T 11-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 dqs_2779 05ff099a4909c9de4eb7bb16112970d5 145 SUPERFAMILY SSF46955 4 121 2.27E-26 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_2779 05ff099a4909c9de4eb7bb16112970d5 145 Pfam PF00376 MerR family regulatory protein 5 40 3.5E-12 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_2779 05ff099a4909c9de4eb7bb16112970d5 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 7.8E-6 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_2779 05ff099a4909c9de4eb7bb16112970d5 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 7.8E-6 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_2779 05ff099a4909c9de4eb7bb16112970d5 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 7.8E-6 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_2779 05ff099a4909c9de4eb7bb16112970d5 145 SMART SM00422 3 71 1.4E-12 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_2779 05ff099a4909c9de4eb7bb16112970d5 145 Pfam PF09278 MerR, DNA binding 45 104 2.7E-13 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding dqs_2779 05ff099a4909c9de4eb7bb16112970d5 145 Gene3D G3DSA:1.10.1660.10 1 120 7.5E-27 T 11-10-2018 dqs_2029 ede1d75891dacf67651b200b4b2c335d 181 Gene3D G3DSA:2.60.120.10 1 181 3.9E-76 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_2029 ede1d75891dacf67651b200b4b2c335d 181 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 175 3.0E-77 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 dqs_2029 ede1d75891dacf67651b200b4b2c335d 181 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 178 3.7E-84 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 dqs_2029 ede1d75891dacf67651b200b4b2c335d 181 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 175 6.7E-75 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 dqs_2029 ede1d75891dacf67651b200b4b2c335d 181 SUPERFAMILY SSF51182 1 178 8.5E-79 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3135 71945d1efd26d44d0da1fc53e7feb547 183 SUPERFAMILY SSF55166 65 182 7.85E-34 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 dqs_3135 71945d1efd26d44d0da1fc53e7feb547 183 Pfam PF05951 Bacterial protein of unknown function (DUF882) 35 181 4.1E-53 T 11-10-2018 IPR010275 Protein of unknown function DUF882 dqs_3135 71945d1efd26d44d0da1fc53e7feb547 183 Gene3D G3DSA:3.30.1380.10 71 183 9.2E-14 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 dqs_2583 6931942fb320a7027dde25dafc980f11 351 Pfam PF00175 Oxidoreductase NAD-binding domain 210 314 1.3E-16 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_2583 6931942fb320a7027dde25dafc980f11 351 SUPERFAMILY SSF63380 106 199 4.26E-24 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_2583 6931942fb320a7027dde25dafc980f11 351 Pfam PF00970 Oxidoreductase FAD-binding domain 115 198 4.2E-12 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_2583 6931942fb320a7027dde25dafc980f11 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 209 228 3.1E-30 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2583 6931942fb320a7027dde25dafc980f11 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 234 243 3.1E-30 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2583 6931942fb320a7027dde25dafc980f11 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 149 156 3.1E-30 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2583 6931942fb320a7027dde25dafc980f11 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 144 3.1E-30 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2583 6931942fb320a7027dde25dafc980f11 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 193 202 3.1E-30 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2583 6931942fb320a7027dde25dafc980f11 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 302 310 3.1E-30 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2583 6931942fb320a7027dde25dafc980f11 351 SUPERFAMILY SSF52343 204 335 4.85E-36 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2583 6931942fb320a7027dde25dafc980f11 351 Gene3D G3DSA:3.10.20.30 1 94 2.2E-25 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2583 6931942fb320a7027dde25dafc980f11 351 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 81 4.7E-16 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_2583 6931942fb320a7027dde25dafc980f11 351 Gene3D G3DSA:2.40.30.10 105 199 2.4E-24 T 11-10-2018 dqs_2583 6931942fb320a7027dde25dafc980f11 351 SUPERFAMILY SSF54292 1 89 2.75E-28 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2583 6931942fb320a7027dde25dafc980f11 351 Gene3D G3DSA:3.40.50.80 200 339 3.5E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Gene3D G3DSA:3.20.20.450 700 950 3.5E-100 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Pfam PF13426 PAS domain 411 513 8.7E-18 T 11-10-2018 IPR000014 PAS domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SMART SM00091 400 470 4.3E-8 T 11-10-2018 IPR000014 PAS domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SMART SM00091 275 345 0.79 T 11-10-2018 IPR000014 PAS domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 304 398 5.1E-11 T 11-10-2018 IPR000014 PAS domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 404 521 1.8E-22 T 11-10-2018 IPR000014 PAS domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Pfam PF00990 Diguanylate cyclase, GGDEF domain 525 683 8.2E-50 T 11-10-2018 IPR000160 GGDEF domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Gene3D G3DSA:3.30.450.20 296 396 7.5E-25 T 11-10-2018 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Pfam PF00072 Response regulator receiver domain 161 243 3.7E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Pfam PF00072 Response regulator receiver domain 4 107 1.0E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Gene3D G3DSA:3.40.50.2300 124 276 1.1E-20 T 11-10-2018 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SUPERFAMILY SSF141868 702 949 1.44E-87 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SUPERFAMILY SSF52172 132 275 4.7E-21 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SMART SM00267 514 687 2.6E-66 T 11-10-2018 IPR000160 GGDEF domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SUPERFAMILY SSF52172 1 123 4.84E-22 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SMART SM00086 350 392 2.3E-7 T 11-10-2018 IPR001610 PAC motif dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SMART SM00086 472 514 8.0E-6 T 11-10-2018 IPR001610 PAC motif dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Gene3D G3DSA:3.30.70.270 524 699 1.2E-61 T 11-10-2018 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Pfam PF00563 EAL domain 704 938 2.3E-70 T 11-10-2018 IPR001633 EAL domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Gene3D G3DSA:3.40.50.2300 1 123 3.5E-20 T 11-10-2018 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Gene3D G3DSA:3.30.450.20 397 523 5.0E-40 T 11-10-2018 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 Pfam PF08447 PAS fold 303 385 7.3E-20 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SMART SM00052 697 943 1.1E-113 T 11-10-2018 IPR001633 EAL domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SUPERFAMILY SSF55073 530 689 3.14E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SUPERFAMILY SSF55785 298 395 1.06E-20 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 PIRSF PIRSF005925 514 951 1.3E-139 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 PIRSF PIRSF005925 301 402 1.4 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 PIRSF PIRSF005925 396 522 2.5E-12 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SMART SM00448 1 116 1.6E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SMART SM00448 134 254 1.3E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 522 684 2.8E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_3520 e2e03427022f60aa6bb5bc0832062357 952 SUPERFAMILY SSF55785 409 511 8.54E-32 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3548 df2b6096919f450e0a237f52e77217ba 64 Pfam PF00831 Ribosomal L29 protein 4 60 1.7E-23 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3548 df2b6096919f450e0a237f52e77217ba 64 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.184 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3548 df2b6096919f450e0a237f52e77217ba 64 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 8.2E-22 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3548 df2b6096919f450e0a237f52e77217ba 64 SUPERFAMILY SSF46561 1 61 1.18E-21 T 11-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3548 df2b6096919f450e0a237f52e77217ba 64 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 11-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3548 df2b6096919f450e0a237f52e77217ba 64 Gene3D G3DSA:1.10.287.310 1 62 6.5E-28 T 11-10-2018 dqs_4124 cbb056d340108067a71802262812a742 467 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 4.8E-25 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 dqs_4124 cbb056d340108067a71802262812a742 467 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 4.8E-25 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 dqs_4124 cbb056d340108067a71802262812a742 467 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 4.8E-25 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 dqs_4124 cbb056d340108067a71802262812a742 467 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 4.8E-25 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 dqs_4124 cbb056d340108067a71802262812a742 467 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 4.8E-25 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 dqs_4124 cbb056d340108067a71802262812a742 467 SUPERFAMILY SSF116726 135 222 1.83E-11 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_4124 cbb056d340108067a71802262812a742 467 Gene3D G3DSA:3.40.50.720 232 365 5.2E-33 T 11-10-2018 dqs_4124 cbb056d340108067a71802262812a742 467 Pfam PF02254 TrkA-N domain 234 349 1.2E-21 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 dqs_4124 cbb056d340108067a71802262812a742 467 Pfam PF02254 TrkA-N domain 3 106 7.1E-26 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 dqs_4124 cbb056d340108067a71802262812a742 467 SUPERFAMILY SSF51735 232 375 1.27E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_4124 cbb056d340108067a71802262812a742 467 SUPERFAMILY SSF116726 363 455 1.44E-7 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_4124 cbb056d340108067a71802262812a742 467 Gene3D G3DSA:3.30.70.1450 366 467 5.9E-29 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_4124 cbb056d340108067a71802262812a742 467 SUPERFAMILY SSF51735 2 150 5.3E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_4124 cbb056d340108067a71802262812a742 467 Gene3D G3DSA:3.40.50.720 2 138 1.8E-43 T 11-10-2018 dqs_4124 cbb056d340108067a71802262812a742 467 Gene3D G3DSA:3.30.70.1450 139 230 1.8E-22 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_4124 cbb056d340108067a71802262812a742 467 Pfam PF02080 TrkA-C domain 161 224 3.7E-11 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 dqs_4124 cbb056d340108067a71802262812a742 467 Pfam PF02080 TrkA-C domain 388 460 5.8E-10 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 dqs_1718 e73b092f9d46be8d73e46c1cbf660128 206 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 196 4.9E-48 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 dqs_1718 e73b092f9d46be8d73e46c1cbf660128 206 SUPERFAMILY SSF52540 1 202 1.13E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1718 e73b092f9d46be8d73e46c1cbf660128 206 Pfam PF02223 Thymidylate kinase 9 196 1.4E-45 T 11-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 dqs_1718 e73b092f9d46be8d73e46c1cbf660128 206 Hamap MF_00165 Thymidylate kinase [tmk]. 5 204 29.197 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 dqs_1718 e73b092f9d46be8d73e46c1cbf660128 206 Gene3D G3DSA:3.40.50.300 1 204 7.5E-66 T 11-10-2018 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 245 310 8.8E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 Pfam PF00672 HAMP domain 193 239 5.9E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 SMART SM00388 244 310 2.3E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 SMART SM00387 353 464 5.4E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3085 8a0906000607f08e8c7d164a4913323b 465 SMART SM00304 190 243 1.7E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 SUPERFAMILY SSF55874 299 462 1.57E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3085 8a0906000607f08e8c7d164a4913323b 465 SUPERFAMILY SSF47384 227 311 7.85E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 Gene3D G3DSA:3.30.565.10 315 464 6.1E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3085 8a0906000607f08e8c7d164a4913323b 465 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 6 461 4.9E-150 T 11-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 Gene3D G3DSA:1.10.287.130 194 311 4.7E-23 T 11-10-2018 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 463 5.1E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3085 8a0906000607f08e8c7d164a4913323b 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 443 2.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 418 2.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 2.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 2.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3085 8a0906000607f08e8c7d164a4913323b 465 SUPERFAMILY SSF158472 194 240 9.94E-5 T 11-10-2018 dqs_2321 722ead11b11592d67ff62798d08b0edc 396 Gene3D G3DSA:3.90.1150.10 2 373 1.0E-140 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2321 722ead11b11592d67ff62798d08b0edc 396 Gene3D G3DSA:3.40.640.10 47 295 1.0E-140 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2321 722ead11b11592d67ff62798d08b0edc 396 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 211 248 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_2321 722ead11b11592d67ff62798d08b0edc 396 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 4 382 3.0E-143 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 dqs_2321 722ead11b11592d67ff62798d08b0edc 396 SUPERFAMILY SSF53383 3 384 2.11E-124 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2321 722ead11b11592d67ff62798d08b0edc 396 PIRSF PIRSF000521 160 387 1.0E-36 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_2321 722ead11b11592d67ff62798d08b0edc 396 PIRSF PIRSF000521 1 145 1.6E-15 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_2321 722ead11b11592d67ff62798d08b0edc 396 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 3 387 69.521 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 dqs_2321 722ead11b11592d67ff62798d08b0edc 396 Pfam PF00202 Aminotransferase class-III 10 381 3.1E-115 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_0866 adb3cab754ce091edacdffab9afbda5b 215 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 1.7E-6 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_0866 adb3cab754ce091edacdffab9afbda5b 215 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_0866 adb3cab754ce091edacdffab9afbda5b 215 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 3.4E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_0866 adb3cab754ce091edacdffab9afbda5b 215 SUPERFAMILY SSF54523 8 94 1.8E-8 T 11-10-2018 dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 Pfam PF00571 CBS domain 230 286 4.5E-5 T 11-10-2018 IPR000644 CBS domain dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 Pfam PF00571 CBS domain 166 222 1.5E-6 T 11-10-2018 IPR000644 CBS domain dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 Gene3D G3DSA:1.25.60.10 37 161 5.2E-19 T 11-10-2018 IPR038076 MgtE, N-terminal domain superfamily dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 SMART SM00116 238 286 2.4 T 11-10-2018 IPR000644 CBS domain dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 SMART SM00116 173 226 0.15 T 11-10-2018 IPR000644 CBS domain dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 SMART SM00924 63 166 1.3E-35 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 Pfam PF03448 MgtE intracellular N domain 63 164 1.7E-25 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 Gene3D G3DSA:1.10.357.20 305 479 3.0E-46 T 11-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 Pfam PF01769 Divalent cation transporter 351 472 3.2E-25 T 11-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 SUPERFAMILY SSF161093 308 479 2.35E-47 T 11-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 Gene3D G3DSA:3.10.580.10 162 290 1.3E-39 T 11-10-2018 dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 TIGRFAM TIGR00400 mgtE: magnesium transporter 40 479 1.8E-85 T 11-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 SUPERFAMILY SSF158791 42 163 2.35E-28 T 11-10-2018 dqs_0774 81f5c7ff6491a72e6cfe6b3990078215 480 SUPERFAMILY SSF54631 165 305 5.37E-26 T 11-10-2018 dqs_3001 c3881615b1ecf0adcc36ca305110ab28 340 Gene3D G3DSA:1.10.8.300 206 323 2.0E-38 T 11-10-2018 dqs_3001 c3881615b1ecf0adcc36ca305110ab28 340 SUPERFAMILY SSF52540 21 298 6.74E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3001 c3881615b1ecf0adcc36ca305110ab28 340 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 47 177 4.8E-63 T 11-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 dqs_3001 c3881615b1ecf0adcc36ca305110ab28 340 PIRSF PIRSF002849 1 328 1.2E-131 T 11-10-2018 dqs_3001 c3881615b1ecf0adcc36ca305110ab28 340 Gene3D G3DSA:3.40.50.300 28 194 7.8E-45 T 11-10-2018 dqs_1533 ddbd4dea0c264555db6e35a54b32a958 491 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 13 477 1.1E-136 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 dqs_1533 ddbd4dea0c264555db6e35a54b32a958 491 Pfam PF00361 Proton-conducting membrane transporter 125 427 1.3E-74 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1533 ddbd4dea0c264555db6e35a54b32a958 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 421 440 9.1E-6 T 11-10-2018 dqs_1533 ddbd4dea0c264555db6e35a54b32a958 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 73 98 9.1E-6 T 11-10-2018 dqs_1533 ddbd4dea0c264555db6e35a54b32a958 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 308 320 9.1E-6 T 11-10-2018 dqs_1533 ddbd4dea0c264555db6e35a54b32a958 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 9.1E-6 T 11-10-2018 dqs_1533 ddbd4dea0c264555db6e35a54b32a958 491 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 478 18.012 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 dqs_1189 81854658293aa7f698f08f6a3701337c 156 Gene3D G3DSA:3.10.20.80 1 60 9.8E-28 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 dqs_1189 81854658293aa7f698f08f6a3701337c 156 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 154 7.9E-65 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 dqs_1189 81854658293aa7f698f08f6a3701337c 156 SUPERFAMILY SSF55200 69 154 1.05E-34 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 dqs_1189 81854658293aa7f698f08f6a3701337c 156 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 61 9.4E-27 T 11-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 dqs_1189 81854658293aa7f698f08f6a3701337c 156 Gene3D G3DSA:3.30.110.10 61 156 1.8E-38 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 dqs_1189 81854658293aa7f698f08f6a3701337c 156 SUPERFAMILY SSF54364 1 62 1.31E-24 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 dqs_1189 81854658293aa7f698f08f6a3701337c 156 ProSitePatterns PS00938 Initiation factor 3 signature. 43 56 - T 11-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 dqs_1189 81854658293aa7f698f08f6a3701337c 156 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 68 153 3.1E-39 T 11-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 dqs_1189 81854658293aa7f698f08f6a3701337c 156 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 155 27.174 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 dqs_3291 4375c359f0e04cf458a93588849087a7 428 Gene3D G3DSA:3.30.565.10 282 421 4.7E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3291 4375c359f0e04cf458a93588849087a7 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 380 7.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3291 4375c359f0e04cf458a93588849087a7 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 421 7.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3291 4375c359f0e04cf458a93588849087a7 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 352 366 7.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3291 4375c359f0e04cf458a93588849087a7 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 402 7.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3291 4375c359f0e04cf458a93588849087a7 428 SUPERFAMILY SSF55874 286 420 1.38E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3291 4375c359f0e04cf458a93588849087a7 428 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 420 7.5E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3291 4375c359f0e04cf458a93588849087a7 428 SMART SM00387 320 424 7.0E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3291 4375c359f0e04cf458a93588849087a7 428 SUPERFAMILY SSF47384 193 274 5.69E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3291 4375c359f0e04cf458a93588849087a7 428 SMART SM00304 155 209 4.7E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3291 4375c359f0e04cf458a93588849087a7 428 Gene3D G3DSA:1.10.287.130 160 276 2.1E-19 T 11-10-2018 dqs_3291 4375c359f0e04cf458a93588849087a7 428 SMART SM00388 210 276 4.2E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3291 4375c359f0e04cf458a93588849087a7 428 Pfam PF00512 His Kinase A (phospho-acceptor) domain 213 274 6.0E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2531 dc31f440e6e9173f012a8cb091820056 401 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 7 399 77.404 T 11-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 dqs_2531 dc31f440e6e9173f012a8cb091820056 401 SUPERFAMILY SSF51679 7 354 1.44E-97 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 dqs_2531 dc31f440e6e9173f012a8cb091820056 401 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 8 353 3.7E-188 T 11-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 dqs_2531 dc31f440e6e9173f012a8cb091820056 401 Pfam PF00296 Luciferase-like monooxygenase 8 329 1.1E-84 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 dqs_2531 dc31f440e6e9173f012a8cb091820056 401 Gene3D G3DSA:3.20.20.30 6 365 3.1E-147 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 SUPERFAMILY SSF51905 1 346 4.04E-63 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 48 58 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 184 209 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 148 157 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 47 62 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 351 372 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 316 323 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 438 458 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 287 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 416 431 3.2E-78 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 474 2.7E-161 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 Gene3D G3DSA:3.50.50.60 5 341 1.7E-113 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 336 2.8E-71 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 SUPERFAMILY SSF55424 351 473 3.09E-42 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PIRSF PIRSF000350 1 470 8.1E-82 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.1E-44 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 288 2.1E-44 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 301 323 2.1E-44 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 2.1E-44 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 184 202 2.1E-44 T 11-10-2018 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 Gene3D G3DSA:3.50.50.60 164 286 1.7E-113 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 355 464 1.1E-37 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 dqs_1680 2c8491f4831c9a762c4bbcbcb7b12d20 474 Gene3D G3DSA:3.30.390.30 354 474 2.8E-46 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_1341 52f9e4040f233ea5aee5e13e5743e92c 133 Gene3D G3DSA:3.10.180.10 1 130 3.9E-32 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1341 52f9e4040f233ea5aee5e13e5743e92c 133 ProSitePatterns PS00934 Glyoxalase I signature 1. 8 29 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 dqs_1341 52f9e4040f233ea5aee5e13e5743e92c 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 125 2.9E-14 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_1341 52f9e4040f233ea5aee5e13e5743e92c 133 SUPERFAMILY SSF54593 5 132 2.82E-30 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 241 352 7.3E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 Pfam PF00512 His Kinase A (phospho-acceptor) domain 138 195 1.4E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 SMART SM00387 240 355 2.0E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 SMART SM00388 137 202 1.7E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 SUPERFAMILY SSF47384 127 195 5.1E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 Pfam PF08448 PAS fold 18 109 3.5E-6 T 11-10-2018 IPR013656 PAS fold-4 dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 Gene3D G3DSA:3.30.450.20 16 120 1.8E-16 T 11-10-2018 dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 352 2.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 PRINTS PR00344 Bacterial sensor protein C-terminal signature 287 301 2.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 334 2.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 SUPERFAMILY SSF55785 18 105 2.09E-7 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 SUPERFAMILY SSF55874 205 352 2.75E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 Gene3D G3DSA:3.30.565.10 200 354 1.1E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0810 9b4f1e51baa3d73c026f45e9dad6f9f8 357 Gene3D G3DSA:1.10.287.130 140 197 1.3E-14 T 11-10-2018 dqs_3133 a0e9435ad57b3f53ad80c9ee7bac2d0d 715 Gene3D G3DSA:2.40.170.20 189 715 2.4E-144 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_3133 a0e9435ad57b3f53ad80c9ee7bac2d0d 715 Pfam PF00593 TonB dependent receptor 302 714 4.3E-57 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_3133 a0e9435ad57b3f53ad80c9ee7bac2d0d 715 SUPERFAMILY SSF56935 34 715 1.63E-141 T 11-10-2018 dqs_3133 a0e9435ad57b3f53ad80c9ee7bac2d0d 715 Pfam PF07715 TonB-dependent Receptor Plug Domain 80 179 5.8E-21 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_3133 a0e9435ad57b3f53ad80c9ee7bac2d0d 715 Gene3D G3DSA:2.170.130.10 56 188 1.8E-41 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_3133 a0e9435ad57b3f53ad80c9ee7bac2d0d 715 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 81 715 1.5E-118 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 dqs_3684 3b2854bddfb6523d7e9fa7bcedd47e47 269 SUPERFAMILY SSF53335 39 223 6.14E-29 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3684 3b2854bddfb6523d7e9fa7bcedd47e47 269 Gene3D G3DSA:3.40.50.150 73 230 9.4E-26 T 11-10-2018 dqs_3684 3b2854bddfb6523d7e9fa7bcedd47e47 269 Pfam PF13847 Methyltransferase domain 89 190 1.4E-12 T 11-10-2018 IPR025714 Methyltransferase domain dqs_3400 db66bc0a0a289f54a763b69406fea253 355 Gene3D G3DSA:3.40.50.2000 173 312 1.3E-21 T 11-10-2018 dqs_3400 db66bc0a0a289f54a763b69406fea253 355 Pfam PF13692 Glycosyl transferases group 1 177 306 1.4E-11 T 11-10-2018 dqs_3400 db66bc0a0a289f54a763b69406fea253 355 SUPERFAMILY SSF53756 1 342 8.64E-48 T 11-10-2018 dqs_3400 db66bc0a0a289f54a763b69406fea253 355 Pfam PF13579 Glycosyl transferase 4-like domain 43 153 4.5E-11 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3400 db66bc0a0a289f54a763b69406fea253 355 Gene3D G3DSA:3.40.50.2000 35 165 3.1E-12 T 11-10-2018 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 Gene3D G3DSA:3.40.47.10 132 394 9.9E-140 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 Pfam PF00108 Thiolase, N-terminal domain 9 267 1.1E-72 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 90 108 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 396 5.4E-136 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 ProSitePatterns PS00099 Thiolases active site. 379 392 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 Gene3D G3DSA:3.40.47.10 10 281 9.9E-140 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 SUPERFAMILY SSF53901 276 397 1.15E-39 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 ProSitePatterns PS00737 Thiolases signature 2. 344 360 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 Pfam PF02803 Thiolase, C-terminal domain 276 397 2.2E-41 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 PIRSF PIRSF000429 3 398 6.4E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_0480 e6db36a3fc4e54f3f5623308bf30b54c 398 SUPERFAMILY SSF53901 7 274 2.54E-72 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2725 bd1c53c1970a9037d3e6bfc2a0e1ecec 145 Gene3D G3DSA:3.10.580.10 1 135 1.9E-32 T 11-10-2018 dqs_2725 bd1c53c1970a9037d3e6bfc2a0e1ecec 145 Pfam PF00571 CBS domain 11 59 2.9E-7 T 11-10-2018 IPR000644 CBS domain dqs_2725 bd1c53c1970a9037d3e6bfc2a0e1ecec 145 Pfam PF00571 CBS domain 74 122 2.2E-9 T 11-10-2018 IPR000644 CBS domain dqs_2725 bd1c53c1970a9037d3e6bfc2a0e1ecec 145 SMART SM00116 81 128 1.1E-4 T 11-10-2018 IPR000644 CBS domain dqs_2725 bd1c53c1970a9037d3e6bfc2a0e1ecec 145 SMART SM00116 14 63 2.3E-6 T 11-10-2018 IPR000644 CBS domain dqs_2725 bd1c53c1970a9037d3e6bfc2a0e1ecec 145 SUPERFAMILY SSF54631 12 125 7.58E-27 T 11-10-2018 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 PIRSF PIRSF036480 4 291 6.1E-113 T 11-10-2018 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 8 290 2.2E-107 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 4 290 47.636 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 Gene3D G3DSA:3.30.70.260 3 94 2.5E-23 T 11-10-2018 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 Pfam PF00551 Formyl transferase 96 270 2.4E-38 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 SUPERFAMILY SSF53328 96 291 1.2E-62 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 Gene3D G3DSA:3.40.50.170 95 291 4.3E-75 T 11-10-2018 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 SUPERFAMILY SSF55021 6 92 2.75E-15 T 11-10-2018 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 9 35 5.8E-55 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 264 289 5.8E-55 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 242 264 5.8E-55 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 118 145 5.8E-55 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 dqs_3893 5335a43c716efff102d7c2489d3fabd8 291 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 96 118 5.8E-55 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 dqs_2155 41b4ee32430bb83629508433bcc79bce 301 SUPERFAMILY SSF53448 1 272 1.37E-62 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2155 41b4ee32430bb83629508433bcc79bce 301 Pfam PF00483 Nucleotidyl transferase 11 268 6.4E-29 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 dqs_2155 41b4ee32430bb83629508433bcc79bce 301 Gene3D G3DSA:3.90.550.10 1 296 1.2E-86 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2155 41b4ee32430bb83629508433bcc79bce 301 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 268 3.6E-110 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 Gene3D G3DSA:1.10.10.60 185 291 1.8E-23 T 11-10-2018 dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 SMART SM00342 203 286 1.8E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 SUPERFAMILY SSF51182 38 148 1.63E-9 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 Pfam PF12833 Helix-turn-helix domain 209 287 7.9E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 Pfam PF02311 AraC-like ligand binding domain 37 147 2.8E-5 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 5.4E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 5.4E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 SUPERFAMILY SSF46689 242 289 1.57E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2591 9463e86a7638fb22845ca855b70dfdba 292 Gene3D G3DSA:2.60.120.10 36 103 1.5E-5 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 SMART SM00382 226 369 5.8E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 SMART SM00065 36 183 1.4E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 Pfam PF02954 Bacterial regulatory protein, Fis family 474 508 7.4E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 Gene3D G3DSA:1.10.10.60 473 516 1.3E-10 T 11-10-2018 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 SUPERFAMILY SSF46689 418 512 2.73E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 SUPERFAMILY SSF55781 16 171 2.62E-18 T 11-10-2018 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 Gene3D G3DSA:1.10.8.60 378 454 3.6E-22 T 11-10-2018 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 Pfam PF01590 GAF domain 37 172 1.2E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 Gene3D G3DSA:3.30.450.40 18 185 4.5E-36 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 Gene3D G3DSA:3.40.50.300 193 377 1.3E-68 T 11-10-2018 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 Pfam PF00158 Sigma-54 interaction domain 206 372 6.5E-74 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 TIGRFAM TIGR01817 nifA: Nif-specific regulatory protein 20 450 5.1E-186 T 11-10-2018 IPR010113 Nif-specific regulatory protein GO:0003700|GO:0006355|GO:0009399 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 SUPERFAMILY SSF52540 205 446 4.06E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 476 493 1.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 493 513 1.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0529 bcc4e2146aa71716fd30d41c3f1a9812 517 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 418 427 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 PRINTS PR00340 P-II protein signature 83 103 9.5E-46 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 PRINTS PR00340 P-II protein signature 2 17 9.5E-46 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 PRINTS PR00340 P-II protein signature 52 75 9.5E-46 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 PRINTS PR00340 P-II protein signature 23 41 9.5E-46 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 SMART SM00938 4 105 1.4E-68 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 Gene3D G3DSA:3.30.70.120 1 112 1.6E-48 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 PIRSF PIRSF039144 1 112 1.1E-56 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 SUPERFAMILY SSF54913 1 112 6.99E-47 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta dqs_1483 edb182b1bd05a184a99db4c324f17cce 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.0E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_2094 4c6ac4a4dee75381fb2684e0a3573924 161 SMART SM00903 11 154 3.7E-62 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_2094 4c6ac4a4dee75381fb2684e0a3573924 161 Gene3D G3DSA:2.30.110.10 1 158 2.6E-51 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_2094 4c6ac4a4dee75381fb2684e0a3573924 161 Pfam PF01613 Flavin reductase like domain 12 153 2.0E-37 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_2094 4c6ac4a4dee75381fb2684e0a3573924 161 SUPERFAMILY SSF50475 2 153 8.83E-50 T 11-10-2018 dqs_2490 16e475869c073f485180f1a86008edc0 269 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 7 18 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2490 16e475869c073f485180f1a86008edc0 269 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 28 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2490 16e475869c073f485180f1a86008edc0 269 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2490 16e475869c073f485180f1a86008edc0 269 Gene3D G3DSA:3.40.190.10 146 239 2.5E-43 T 11-10-2018 dqs_2490 16e475869c073f485180f1a86008edc0 269 SUPERFAMILY SSF53850 75 267 1.5E-20 T 11-10-2018 dqs_2490 16e475869c073f485180f1a86008edc0 269 Pfam PF03466 LysR substrate binding domain 74 264 8.0E-21 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2490 16e475869c073f485180f1a86008edc0 269 Gene3D G3DSA:1.10.10.10 1 72 3.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2490 16e475869c073f485180f1a86008edc0 269 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 50 1.9E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2490 16e475869c073f485180f1a86008edc0 269 SUPERFAMILY SSF46785 1 96 1.92E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2490 16e475869c073f485180f1a86008edc0 269 Gene3D G3DSA:3.40.190.10 80 245 2.5E-43 T 11-10-2018 dqs_3624 5bd7f0b33e11958faa7fddec8763e786 202 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3624 5bd7f0b33e11958faa7fddec8763e786 202 Pfam PF13247 4Fe-4S dicluster domain 52 124 2.7E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3624 5bd7f0b33e11958faa7fddec8763e786 202 Gene3D G3DSA:3.30.70.20 61 119 7.9E-36 T 11-10-2018 dqs_3624 5bd7f0b33e11958faa7fddec8763e786 202 Gene3D G3DSA:3.30.70.20 5 168 7.9E-36 T 11-10-2018 dqs_3624 5bd7f0b33e11958faa7fddec8763e786 202 SUPERFAMILY SSF54862 3 181 5.34E-49 T 11-10-2018 dqs_3624 5bd7f0b33e11958faa7fddec8763e786 202 PRINTS PR00354 7Fe ferredoxin signature 82 99 4.2E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 dqs_3624 5bd7f0b33e11958faa7fddec8763e786 202 PRINTS PR00354 7Fe ferredoxin signature 65 75 4.2E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 dqs_3624 5bd7f0b33e11958faa7fddec8763e786 202 PRINTS PR00354 7Fe ferredoxin signature 55 65 4.2E-5 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 121 135 1.4E-28 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 81 94 1.4E-28 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 218 228 1.4E-28 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 48 62 1.4E-28 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00102 Ornithine carbamoyltransferase signature 280 291 1.4E-28 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 Gene3D G3DSA:3.40.50.1370 6 298 9.5E-112 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 4 302 76.232 T 11-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 5 145 9.1E-47 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 Gene3D G3DSA:3.40.50.1370 135 288 9.5E-112 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 SUPERFAMILY SSF53671 4 301 1.14E-101 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 266 289 3.7E-28 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 254 263 3.7E-28 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 132 143 3.7E-28 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 50 69 3.7E-28 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 50 57 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 5 301 3.7E-107 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 dqs_2320 46cf61f30b9aaf9c9031638cd5795b3e 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 151 299 2.1E-49 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 dqs_1475 4cfa4208da891aca899a1f723a08ab4e 238 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 8 217 5.5E-55 T 11-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain dqs_3946 39dd26624fb94e191102418f3d57f363 152 Gene3D G3DSA:3.40.30.10 3 136 5.7E-38 T 11-10-2018 dqs_3946 39dd26624fb94e191102418f3d57f363 152 Pfam PF07449 Hydrogenase-1 expression protein HyaE 12 120 3.3E-24 T 11-10-2018 IPR010893 [NiFe]-hydrogenase maturation factor HyaE dqs_3946 39dd26624fb94e191102418f3d57f363 152 PIRSF PIRSF038934 3 142 1.9E-54 T 11-10-2018 IPR010893 [NiFe]-hydrogenase maturation factor HyaE dqs_3946 39dd26624fb94e191102418f3d57f363 152 SUPERFAMILY SSF52833 10 134 5.47E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 Pfam PF12833 Helix-turn-helix domain 119 196 2.9E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 Gene3D G3DSA:3.30.160.70 189 281 1.0E-31 T 11-10-2018 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 284 363 9.3E-33 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 Gene3D G3DSA:1.10.10.10 282 367 2.0E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 PIRSF PIRSF000409 10 371 2.5E-138 T 11-10-2018 IPR016221 Bifunctional regulatory protein Ada dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 Pfam PF02805 Metal binding domain of Ada 25 88 2.4E-32 T 11-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 SMART SM00342 113 195 2.8E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 283 362 1.8E-34 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 333 339 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 SUPERFAMILY SSF46689 100 146 4.93E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 SUPERFAMILY SSF57884 21 105 4.97E-33 T 11-10-2018 IPR035451 Ada-like domain superfamily dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 Gene3D G3DSA:1.10.10.60 93 159 1.8E-19 T 11-10-2018 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 SUPERFAMILY SSF46767 282 363 1.11E-30 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 SUPERFAMILY SSF53155 202 281 4.71E-22 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 dqs_2425 dbcc5ed0ff1e69a2df162553f2cc6bec 382 Gene3D G3DSA:3.40.10.10 16 89 7.1E-32 T 11-10-2018 IPR035451 Ada-like domain superfamily dqs_2279 31251d816e251891caef7702e61d837a 546 Pfam PF06418 CTP synthase N-terminus 3 264 1.4E-126 T 11-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 dqs_2279 31251d816e251891caef7702e61d837a 546 SUPERFAMILY SSF52540 1 266 2.21E-122 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2279 31251d816e251891caef7702e61d837a 546 Hamap MF_01227 CTP synthase [pyrG]. 2 541 51.128 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 dqs_2279 31251d816e251891caef7702e61d837a 546 Gene3D G3DSA:3.40.50.300 1 284 3.4E-131 T 11-10-2018 dqs_2279 31251d816e251891caef7702e61d837a 546 TIGRFAM TIGR00337 PyrG: CTP synthase 1 536 1.5E-247 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 dqs_2279 31251d816e251891caef7702e61d837a 546 SUPERFAMILY SSF52317 288 540 2.37E-82 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_2279 31251d816e251891caef7702e61d837a 546 Pfam PF00117 Glutamine amidotransferase class-I 300 535 4.3E-55 T 11-10-2018 IPR017926 Glutamine amidotransferase dqs_2279 31251d816e251891caef7702e61d837a 546 Gene3D G3DSA:3.40.50.880 285 545 1.3E-98 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_2087 dcba918a266238f4bd68e1e7774511ad 281 Gene3D G3DSA:3.90.226.10 7 222 8.2E-62 T 11-10-2018 dqs_2087 dcba918a266238f4bd68e1e7774511ad 281 SUPERFAMILY SSF52096 25 280 1.17E-73 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_2087 dcba918a266238f4bd68e1e7774511ad 281 Gene3D G3DSA:1.10.12.10 223 281 7.4E-18 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_2087 dcba918a266238f4bd68e1e7774511ad 281 Pfam PF00378 Enoyl-CoA hydratase/isomerase 29 280 5.5E-41 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_2087 dcba918a266238f4bd68e1e7774511ad 281 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 121 141 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 dqs_3287 a02be7dfffd5ec1ed84a2cc0004b3894 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 1.7E-27 T 11-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 dqs_3287 a02be7dfffd5ec1ed84a2cc0004b3894 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 157 2.1E-64 T 11-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 dqs_3287 a02be7dfffd5ec1ed84a2cc0004b3894 163 Gene3D G3DSA:3.30.70.1150 83 163 2.3E-30 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal dqs_3287 a02be7dfffd5ec1ed84a2cc0004b3894 163 SUPERFAMILY SSF55021 79 162 1.21E-26 T 11-10-2018 dqs_3287 a02be7dfffd5ec1ed84a2cc0004b3894 163 Pfam PF13710 ACT domain 12 73 8.8E-17 T 11-10-2018 dqs_3287 a02be7dfffd5ec1ed84a2cc0004b3894 163 Gene3D G3DSA:3.30.70.260 1 78 1.7E-36 T 11-10-2018 dqs_3287 a02be7dfffd5ec1ed84a2cc0004b3894 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 4.0E-36 T 11-10-2018 dqs_3287 a02be7dfffd5ec1ed84a2cc0004b3894 163 SUPERFAMILY SSF55021 1 76 3.23E-23 T 11-10-2018 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 Pfam PF00512 His Kinase A (phospho-acceptor) domain 309 373 2.7E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 SMART SM00388 308 376 3.3E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 529 4.0E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 Gene3D G3DSA:1.10.287.130 296 376 7.1E-17 T 11-10-2018 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 SUPERFAMILY SSF55874 365 529 2.36E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 SMART SM00448 4 116 1.4E-8 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 SUPERFAMILY SSF52172 1 118 4.27E-23 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 Gene3D G3DSA:3.40.50.2300 1 117 8.3E-21 T 11-10-2018 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 Pfam PF00072 Response regulator receiver domain 6 107 6.7E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 SMART SM00387 418 531 6.4E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 486 3.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 528 3.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 472 3.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 509 3.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 Pfam PF13185 GAF domain 148 283 2.4E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 SMART SM00065 146 292 6.5E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 Gene3D G3DSA:3.30.565.10 381 535 1.2E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 SUPERFAMILY SSF47384 292 375 3.14E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 SUPERFAMILY SSF55781 150 294 3.27E-21 T 11-10-2018 dqs_1707 bc9740e8777482792605ab16a2f9c8ea 539 Gene3D G3DSA:3.30.450.40 122 295 2.4E-26 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_3586 213f08afc0af872307b035621a7891f6 440 SUPERFAMILY SSF53822 28 403 1.21E-52 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_3586 213f08afc0af872307b035621a7891f6 440 Pfam PF13458 Periplasmic binding protein 27 398 5.9E-82 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_3586 213f08afc0af872307b035621a7891f6 440 Gene3D G3DSA:3.40.50.2300 148 289 7.7E-90 T 11-10-2018 dqs_3586 213f08afc0af872307b035621a7891f6 440 Gene3D G3DSA:3.40.50.2300 37 361 7.7E-90 T 11-10-2018 dqs_2692 db03bf54307ddd8709bf60bbb685a052 331 Gene3D G3DSA:3.20.20.100 2 329 2.7E-107 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily dqs_2692 db03bf54307ddd8709bf60bbb685a052 331 Pfam PF00248 Aldo/keto reductase family 14 308 8.5E-71 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain dqs_2692 db03bf54307ddd8709bf60bbb685a052 331 PRINTS PR00069 Aldo-keto reductase signature 105 123 1.0E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_2692 db03bf54307ddd8709bf60bbb685a052 331 PRINTS PR00069 Aldo-keto reductase signature 41 65 1.0E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_2692 db03bf54307ddd8709bf60bbb685a052 331 PRINTS PR00069 Aldo-keto reductase signature 136 153 1.0E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_2692 db03bf54307ddd8709bf60bbb685a052 331 SUPERFAMILY SSF51430 1 316 2.49E-92 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily dqs_0193 bc165a374ef9089abe309ef7f980bd05 315 Pfam PF04055 Radical SAM superfamily 85 245 2.8E-13 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_0193 bc165a374ef9089abe309ef7f980bd05 315 SUPERFAMILY SSF102114 45 310 2.09E-69 T 11-10-2018 dqs_0193 bc165a374ef9089abe309ef7f980bd05 315 SMART SM00729 78 286 1.1E-10 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_0193 bc165a374ef9089abe309ef7f980bd05 315 Gene3D G3DSA:3.20.20.70 41 288 5.1E-21 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0193 bc165a374ef9089abe309ef7f980bd05 315 Hamap MF_00206 Lipoyl synthase [lipA]. 1 315 156.645 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 dqs_0193 bc165a374ef9089abe309ef7f980bd05 315 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 24 67 9.2E-9 T 11-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 dqs_0193 bc165a374ef9089abe309ef7f980bd05 315 PIRSF PIRSF005963 1 314 5.1E-131 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 dqs_0193 bc165a374ef9089abe309ef7f980bd05 315 TIGRFAM TIGR00510 lipA: lipoyl synthase 25 308 1.9E-128 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 dqs_3389 71df2ce66a3d0547d76981f57c9b3849 94 Pfam PF00550 Phosphopantetheine attachment site 18 89 3.6E-6 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain dqs_3389 71df2ce66a3d0547d76981f57c9b3849 94 SUPERFAMILY SSF47336 15 93 3.31E-12 T 11-10-2018 IPR036736 ACP-like superfamily dqs_3389 71df2ce66a3d0547d76981f57c9b3849 94 Gene3D G3DSA:1.10.1200.10 14 93 5.1E-20 T 11-10-2018 IPR036736 ACP-like superfamily dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 PRINTS PR00315 GTP-binding elongation factor signature 89 99 4.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 PRINTS PR00315 GTP-binding elongation factor signature 69 77 4.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 PRINTS PR00315 GTP-binding elongation factor signature 105 116 4.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 PRINTS PR00315 GTP-binding elongation factor signature 19 32 4.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 PRINTS PR00315 GTP-binding elongation factor signature 141 150 4.4E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 Pfam PF03144 Elongation factor Tu domain 2 321 387 5.5E-9 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 SUPERFAMILY SSF52540 13 279 1.02E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 8 533 50.859 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 Pfam PF00009 Elongation factor Tu GTP binding domain 17 279 5.9E-52 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 10 535 7.4E-225 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 Gene3D G3DSA:3.40.50.300 76 386 2.6E-105 T 11-10-2018 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 62 77 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 Gene3D G3DSA:3.30.70.3280 397 535 1.1E-44 T 11-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 SUPERFAMILY SSF50447 263 396 1.5E-27 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 18 152 9.5E-22 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 SUPERFAMILY SSF54980 399 472 5.76E-16 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 Pfam PF16658 Class II release factor RF3, C-terminal domain 394 520 4.0E-43 T 11-10-2018 IPR032090 Peptide chain release factor 3, C-terminal dqs_0090 337d54ab0d2ef8e2f60bc2fc1a814917 540 Gene3D G3DSA:3.40.50.300 114 277 2.6E-105 T 11-10-2018 dqs_2189 59c1a8b7dc8def95aec06def6c429ac6 169 Gene3D G3DSA:3.40.30.10 2 154 2.5E-40 T 11-10-2018 dqs_2189 59c1a8b7dc8def95aec06def6c429ac6 169 SUPERFAMILY SSF52833 2 154 3.52E-43 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2189 59c1a8b7dc8def95aec06def6c429ac6 169 Pfam PF00578 AhpC/TSA family 4 132 6.1E-33 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_2189 59c1a8b7dc8def95aec06def6c429ac6 169 PIRSF PIRSF000239 1 163 7.6E-22 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 SUPERFAMILY SSF50998 33 583 1.96E-168 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 Gene3D G3DSA:2.140.10.10 14 591 4.1E-239 T 11-10-2018 dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 256 277 - T 11-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 Gene3D G3DSA:1.10.760.10 593 688 5.4E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 37 554 2.1E-198 T 11-10-2018 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 SUPERFAMILY SSF46626 595 680 4.03E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 Pfam PF13360 PQQ-like domain 68 190 2.3E-13 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 Pfam PF13360 PQQ-like domain 458 526 9.9E-9 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 602 677 9.9E-12 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 SMART SM00564 134 166 1.2E-7 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 SMART SM00564 494 526 5.0E-5 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 SMART SM00564 258 311 39.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 SMART SM00564 84 115 1.2E-4 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_2983 98128ac62896162d942c5a8da64ac9fa 688 SMART SM00564 181 218 0.73 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3589 f918d9b6646667642bf4ca8a58afb77b 274 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 249 271 4.2E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_3589 f918d9b6646667642bf4ca8a58afb77b 274 SMART SM00382 48 249 1.6E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3589 f918d9b6646667642bf4ca8a58afb77b 274 Pfam PF00005 ABC transporter 39 200 8.4E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3589 f918d9b6646667642bf4ca8a58afb77b 274 Gene3D G3DSA:3.40.50.300 19 273 5.3E-59 T 11-10-2018 dqs_3589 f918d9b6646667642bf4ca8a58afb77b 274 SUPERFAMILY SSF52540 22 271 2.17E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4046 79c25d6cb6b0e7a0c54b7f4e2239d914 347 Pfam PF06996 Type VI secretion, TssG 17 314 1.6E-115 T 11-10-2018 IPR010732 Type VI secretion, TssG-like dqs_4046 79c25d6cb6b0e7a0c54b7f4e2239d914 347 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 17 314 1.5E-115 T 11-10-2018 IPR010732 Type VI secretion, TssG-like dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 Gene3D G3DSA:1.10.10.60 397 448 7.5E-9 T 11-10-2018 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 SUPERFAMILY SSF52172 7 189 1.99E-39 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 Gene3D G3DSA:1.10.8.60 316 395 2.7E-23 T 11-10-2018 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 SUPERFAMILY SSF46689 394 446 1.43E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 SMART SM00382 165 308 3.5E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 SUPERFAMILY SSF52540 147 388 1.08E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 Gene3D G3DSA:3.40.50.2300 4 133 9.6E-35 T 11-10-2018 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 SMART SM00448 7 118 5.8E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 169 182 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 Gene3D G3DSA:3.40.50.300 134 315 3.3E-63 T 11-10-2018 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 Pfam PF00158 Sigma-54 interaction domain 147 311 1.5E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_2905 f8f1a6d316d0f3d56f57db21c26bce79 465 Pfam PF00072 Response regulator receiver domain 10 118 2.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 410 2.4E-68 T 11-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.7E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 532 554 1.7E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 565 575 1.7E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 494 512 1.7E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.7E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.7E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.7E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 627 667 6.6E-7 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 424 580 2.4E-9 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Gene3D G3DSA:3.40.50.620 33 574 0.0 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Gene3D G3DSA:3.10.20.590 815 873 3.2E-21 T 11-10-2018 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Gene3D G3DSA:1.10.730.10 9 803 0.0 T 11-10-2018 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 SUPERFAMILY SSF47323 671 873 5.79E-30 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Gene3D G3DSA:3.90.740.10 227 421 0.0 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 SUPERFAMILY SSF52374 4 676 3.29E-155 T 11-10-2018 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 873 0.0 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Pfam PF09334 tRNA synthetases class I (M) 39 171 1.6E-18 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Gene3D G3DSA:3.10.330.110 575 637 0.0 T 11-10-2018 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 873 23.147 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 SUPERFAMILY SSF50677 226 422 1.05E-49 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3352 f9aec3bce8d169b2c90a9bc1a2f95a86 873 Pfam PF08264 Anticodon-binding domain of tRNA 716 833 1.6E-15 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 dqs_1671 490099e533aefede26ad8bc3aca993ae 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 4.3E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1671 490099e533aefede26ad8bc3aca993ae 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 4.3E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1671 490099e533aefede26ad8bc3aca993ae 242 SMART SM00345 15 74 1.6E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1671 490099e533aefede26ad8bc3aca993ae 242 Gene3D G3DSA:3.40.1410.10 83 241 1.7E-44 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily dqs_1671 490099e533aefede26ad8bc3aca993ae 242 Gene3D G3DSA:1.10.10.10 7 75 5.9E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1671 490099e533aefede26ad8bc3aca993ae 242 SUPERFAMILY SSF64288 63 240 3.61E-38 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily dqs_1671 490099e533aefede26ad8bc3aca993ae 242 Pfam PF07702 UTRA domain 99 232 1.6E-30 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 dqs_1671 490099e533aefede26ad8bc3aca993ae 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 6.5E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1671 490099e533aefede26ad8bc3aca993ae 242 SMART SM00866 94 236 1.8E-27 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 dqs_1671 490099e533aefede26ad8bc3aca993ae 242 SUPERFAMILY SSF46785 9 87 9.0E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 TIGRFAM TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL 19 510 1.6E-179 T 11-10-2018 IPR014285 Nitrogen fixation negative regulator NifL GO:0007165|GO:0009399 dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 142 1.2E-17 T 11-10-2018 IPR000014 PAS domain dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 455 8.9E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 491 8.9E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 510 8.9E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 469 8.9E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 Pfam PF13426 PAS domain 158 265 0.1 T 11-10-2018 IPR000014 PAS domain dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 Pfam PF13426 PAS domain 31 116 4.0E-13 T 11-10-2018 IPR000014 PAS domain dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 SUPERFAMILY SSF55785 133 264 4.71E-10 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 SUPERFAMILY SSF55785 25 133 1.92E-22 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 Gene3D G3DSA:3.30.450.20 153 281 3.6E-7 T 11-10-2018 dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 SMART SM00091 147 209 24.0 T 11-10-2018 IPR000014 PAS domain dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 SMART SM00091 19 89 1.1E-4 T 11-10-2018 IPR000014 PAS domain dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 400 510 2.4E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 Gene3D G3DSA:3.30.565.10 359 515 3.5E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 SUPERFAMILY SSF55874 360 512 1.44E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 SMART SM00387 400 513 7.0E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0528 badfd77a2496671a15ba2782dbbfbf8a 523 Gene3D G3DSA:3.30.450.20 19 152 2.0E-31 T 11-10-2018 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 SUPERFAMILY SSF81606 2 234 1.31E-40 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 Pfam PF00069 Protein kinase domain 278 518 3.7E-34 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 SUPERFAMILY SSF56112 255 527 6.34E-52 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_1291 3264507e70cc8812479a016c7eba1b66 573 Gene3D G3DSA:3.30.200.20 256 345 3.3E-8 T 11-10-2018 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 385 397 - T 11-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 SMART SM00331 13 233 1.7E-5 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 Pfam PF13672 Protein phosphatase 2C 14 191 2.5E-11 T 11-10-2018 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 SMART SM00332 1 231 2.8E-5 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 Gene3D G3DSA:3.60.40.10 1 236 2.5E-36 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 SMART SM00219 266 522 7.4E-4 T 11-10-2018 IPR020635 Tyrosine-protein kinase, catalytic domain GO:0004713|GO:0006468 dqs_1291 3264507e70cc8812479a016c7eba1b66 573 Gene3D G3DSA:1.10.510.10 347 540 3.7E-37 T 11-10-2018 dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 Gene3D G3DSA:1.10.510.10 82 279 2.4E-43 T 11-10-2018 dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 Pfam PF00069 Protein kinase domain 9 248 1.1E-53 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 SMART SM00220 8 263 3.0E-58 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 Gene3D G3DSA:3.30.200.20 6 81 5.2E-20 T 11-10-2018 dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 Gene3D G3DSA:3.30.450.40 629 790 9.1E-20 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 126 138 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 Pfam PF08668 HDOD domain 293 482 9.1E-37 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 SUPERFAMILY SSF109604 281 558 9.1E-49 T 11-10-2018 dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 SUPERFAMILY SSF55781 628 788 3.49E-11 T 11-10-2018 dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 SUPERFAMILY SSF56112 5 285 3.1E-69 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_1371 ae3ca5ad0c5f9fb23fa032b10d30075f 790 Gene3D G3DSA:1.10.3210.10 283 563 4.9E-50 T 11-10-2018 dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 Gene3D G3DSA:3.40.50.1220 187 358 1.9E-60 T 11-10-2018 dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 SUPERFAMILY SSF52467 185 360 1.33E-63 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 5.9E-57 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 3 565 3.7E-252 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 539 2.5E-46 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 Gene3D G3DSA:3.40.50.970 1 185 2.9E-71 T 11-10-2018 dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 SUPERFAMILY SSF52518 366 567 2.4E-66 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 328 1.2E-43 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 SUPERFAMILY SSF52518 2 181 8.25E-63 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_3286 2b94aa20058f3e0b3d7035b149116033 570 Gene3D G3DSA:3.40.50.970 360 569 1.5E-65 T 11-10-2018 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 Gene3D G3DSA:3.40.50.300 1 205 6.5E-71 T 11-10-2018 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site dqs_3571 fe35279c9b65724db52851ae3773df9a 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 7.7E-16 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 Gene3D G3DSA:2.40.30.10 208 336 6.1E-54 T 11-10-2018 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 Gene3D G3DSA:2.40.30.10 340 395 2.1E-29 T 11-10-2018 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 6.9E-33 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal dqs_3571 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 SUPERFAMILY SSF50447 207 303 1.96E-31 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_3571 fe35279c9b65724db52851ae3773df9a 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 61.109 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 SUPERFAMILY SSF50465 304 396 2.76E-36 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal dqs_3571 fe35279c9b65724db52851ae3773df9a 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 3.6E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 7.4E-234 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.5E-59 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3571 fe35279c9b65724db52851ae3773df9a 396 SUPERFAMILY SSF52540 5 221 2.14E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3558 fe35279c9b65724db52851ae3773df9a 396 Gene3D G3DSA:3.40.50.300 1 205 6.5E-71 T 11-10-2018 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site dqs_3558 fe35279c9b65724db52851ae3773df9a 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 7.7E-16 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 Gene3D G3DSA:2.40.30.10 208 336 6.1E-54 T 11-10-2018 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 Gene3D G3DSA:2.40.30.10 340 395 2.1E-29 T 11-10-2018 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 6.9E-33 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal dqs_3558 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.6E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 SUPERFAMILY SSF50447 207 303 1.96E-31 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_3558 fe35279c9b65724db52851ae3773df9a 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 61.109 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 SUPERFAMILY SSF50465 304 396 2.76E-36 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal dqs_3558 fe35279c9b65724db52851ae3773df9a 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 3.6E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 7.4E-234 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.5E-59 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3558 fe35279c9b65724db52851ae3773df9a 396 SUPERFAMILY SSF52540 5 221 2.14E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0240 9ee88305a37574df97146802f0a0e040 381 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 80 247 6.4E-13 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_0240 9ee88305a37574df97146802f0a0e040 381 Gene3D G3DSA:2.40.50.100 99 232 9.8E-14 T 11-10-2018 dqs_0240 9ee88305a37574df97146802f0a0e040 381 Gene3D G3DSA:1.10.287.470 135 200 9.8E-14 T 11-10-2018 dqs_0240 9ee88305a37574df97146802f0a0e040 381 SUPERFAMILY SSF111369 103 244 3.79E-8 T 11-10-2018 dqs_0240 9ee88305a37574df97146802f0a0e040 381 Gene3D G3DSA:2.40.420.20 308 381 2.1E-9 T 11-10-2018 dqs_0240 9ee88305a37574df97146802f0a0e040 381 Gene3D G3DSA:2.40.30.170 233 247 9.8E-14 T 11-10-2018 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 18 40 - T 11-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 Pfam PF00186 Dihydrofolate reductase 7 163 2.4E-57 T 11-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 SUPERFAMILY SSF53597 7 164 1.96E-54 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 PRINTS PR00070 Dihydrofolate reductase signature 95 109 1.0E-16 T 11-10-2018 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 PRINTS PR00070 Dihydrofolate reductase signature 45 56 1.0E-16 T 11-10-2018 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 PRINTS PR00070 Dihydrofolate reductase signature 32 40 1.0E-16 T 11-10-2018 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 PRINTS PR00070 Dihydrofolate reductase signature 18 28 1.0E-16 T 11-10-2018 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 PIRSF PIRSF000194 1 164 1.0E-61 T 11-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 dqs_3335 67512073fcafcc8273dd5c1a53120af1 164 Gene3D G3DSA:3.40.430.10 6 164 6.0E-57 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 dqs_2127 7a84cffd514629defda6113e4e34019f 342 SUPERFAMILY SSF89000 290 339 1.1E-15 T 11-10-2018 dqs_2127 7a84cffd514629defda6113e4e34019f 342 Pfam PF07836 DmpG-like communication domain 276 337 9.1E-30 T 11-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2127 7a84cffd514629defda6113e4e34019f 342 Gene3D G3DSA:3.20.20.70 4 270 1.4E-85 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2127 7a84cffd514629defda6113e4e34019f 342 Pfam PF00682 HMGL-like 8 264 8.5E-58 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 dqs_2127 7a84cffd514629defda6113e4e34019f 342 SUPERFAMILY SSF51569 6 276 1.72E-67 T 11-10-2018 dqs_2127 7a84cffd514629defda6113e4e34019f 342 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 342 216.487 T 11-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2127 7a84cffd514629defda6113e4e34019f 342 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 274 331 5.0E-26 T 11-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2127 7a84cffd514629defda6113e4e34019f 342 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 7 339 1.7E-170 T 11-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2127 7a84cffd514629defda6113e4e34019f 342 Gene3D G3DSA:1.10.8.60 277 342 3.6E-30 T 11-10-2018 dqs_1357 511c8da1075368bc3e08f1cce762e311 381 SUPERFAMILY SSF50969 43 370 1.26E-42 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like dqs_1357 511c8da1075368bc3e08f1cce762e311 381 TIGRFAM TIGR03907 QH_beta: quinohemoprotein amine dehydrogenase, beta subunit 42 381 1.1E-161 T 11-10-2018 IPR023879 Quinohemoprotein amine dehydrogenase, beta subunit dqs_1357 511c8da1075368bc3e08f1cce762e311 381 Gene3D G3DSA:2.130.10.10 32 381 5.4E-125 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_3511 0caebb97788cc5e6c4c8d11ca899440b 166 Pfam PF02600 Disulfide bond formation protein DsbB 9 158 1.4E-42 T 11-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 dqs_3511 0caebb97788cc5e6c4c8d11ca899440b 166 Gene3D G3DSA:1.20.1550.10 2 166 4.7E-51 T 11-10-2018 IPR023380 DsbB-like superfamily dqs_3511 0caebb97788cc5e6c4c8d11ca899440b 166 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 4 166 23.465 T 11-10-2018 IPR022920 Disulphide bond formation protein DsbB dqs_3511 0caebb97788cc5e6c4c8d11ca899440b 166 SUPERFAMILY SSF158442 12 160 9.15E-41 T 11-10-2018 IPR023380 DsbB-like superfamily dqs_2991 0f4ed223ca47dd16cc1414c438c77ffd 477 Gene3D G3DSA:3.40.605.10 10 469 1.2E-165 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_2991 0f4ed223ca47dd16cc1414c438c77ffd 477 Gene3D G3DSA:3.40.309.10 250 441 1.2E-165 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_2991 0f4ed223ca47dd16cc1414c438c77ffd 477 SUPERFAMILY SSF53720 3 472 5.24E-155 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_2991 0f4ed223ca47dd16cc1414c438c77ffd 477 Pfam PF00171 Aldehyde dehydrogenase family 14 471 6.0E-159 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_2991 0f4ed223ca47dd16cc1414c438c77ffd 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_2600 fe6c8e094223072633eee10715459495 575 SUPERFAMILY SSF55785 214 326 5.53E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2600 fe6c8e094223072633eee10715459495 575 SMART SM00388 348 416 3.1E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2600 fe6c8e094223072633eee10715459495 575 SUPERFAMILY SSF47384 334 413 6.67E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2600 fe6c8e094223072633eee10715459495 575 PRINTS PR00344 Bacterial sensor protein C-terminal signature 514 524 1.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2600 fe6c8e094223072633eee10715459495 575 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 566 1.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2600 fe6c8e094223072633eee10715459495 575 PRINTS PR00344 Bacterial sensor protein C-terminal signature 496 510 1.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2600 fe6c8e094223072633eee10715459495 575 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 547 1.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2600 fe6c8e094223072633eee10715459495 575 Pfam PF00512 His Kinase A (phospho-acceptor) domain 349 412 7.8E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2600 fe6c8e094223072633eee10715459495 575 SMART SM00091 203 269 0.0029 T 11-10-2018 IPR000014 PAS domain dqs_2600 fe6c8e094223072633eee10715459495 575 Gene3D G3DSA:3.30.450.20 193 334 6.5E-21 T 11-10-2018 dqs_2600 fe6c8e094223072633eee10715459495 575 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 457 568 5.7E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2600 fe6c8e094223072633eee10715459495 575 Gene3D G3DSA:3.30.565.10 418 568 3.3E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2600 fe6c8e094223072633eee10715459495 575 Pfam PF08448 PAS fold 212 319 1.5E-19 T 11-10-2018 IPR013656 PAS fold-4 dqs_2600 fe6c8e094223072633eee10715459495 575 Pfam PF13493 Domain of unknown function (DUF4118) 96 195 1.2E-10 T 11-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain dqs_2600 fe6c8e094223072633eee10715459495 575 SUPERFAMILY SSF55874 418 568 4.58E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2600 fe6c8e094223072633eee10715459495 575 SMART SM00387 457 569 7.0E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2600 fe6c8e094223072633eee10715459495 575 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 203 323 1.0E-11 T 11-10-2018 IPR000014 PAS domain dqs_2600 fe6c8e094223072633eee10715459495 575 Gene3D G3DSA:1.10.287.130 335 416 5.3E-12 T 11-10-2018 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 Gene3D G3DSA:3.10.20.30 400 473 7.8E-31 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 Gene3D G3DSA:3.30.70.260 648 728 3.0E-15 T 11-10-2018 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 SMART SM00471 60 172 3.3E-11 T 11-10-2018 IPR003607 HD/PDEase domain dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 SMART SM00954 254 364 1.2E-63 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 SUPERFAMILY SSF109604 23 208 1.02E-70 T 11-10-2018 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 SUPERFAMILY SSF55021 652 722 4.2E-8 T 11-10-2018 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 Pfam PF02824 TGS domain 407 466 1.4E-18 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 Pfam PF13328 HD domain 45 194 1.7E-51 T 11-10-2018 IPR003607 HD/PDEase domain dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 Gene3D G3DSA:3.30.460.10 212 344 2.5E-45 T 11-10-2018 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 Pfam PF13291 ACT domain 648 724 2.5E-19 T 11-10-2018 IPR002912 ACT domain dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 45 722 1.2E-232 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 Pfam PF04607 Region found in RelA / SpoT proteins 254 364 2.4E-34 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 SUPERFAMILY SSF81301 200 411 2.45E-62 T 11-10-2018 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 Gene3D G3DSA:1.10.3210.10 21 209 6.6E-78 T 11-10-2018 dqs_4094 b55ab2b19ce4394c2ba831126b8c9de1 732 SUPERFAMILY SSF81271 394 466 6.54E-22 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 85 1.4E-12 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 Pfam PF00970 Oxidoreductase FAD-binding domain 113 202 7.0E-18 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 SUPERFAMILY SSF54292 5 104 2.1E-24 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 251 262 3.8E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 310 318 3.8E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 3.8E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 154 161 3.8E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 Gene3D G3DSA:3.10.20.30 3 94 1.6E-20 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_1335 4890ef502558b118adb32ebe78c60f68 347 Gene3D G3DSA:3.40.50.80 206 346 7.1E-34 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_1335 4890ef502558b118adb32ebe78c60f68 347 Pfam PF00175 Oxidoreductase NAD-binding domain 215 323 3.9E-20 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 Gene3D G3DSA:2.40.30.10 102 201 8.9E-27 T 11-10-2018 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 137 149 3.4E-21 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 310 318 3.4E-21 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 214 233 3.4E-21 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 239 248 3.4E-21 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 154 161 3.4E-21 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 198 207 3.4E-21 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_1335 4890ef502558b118adb32ebe78c60f68 347 SUPERFAMILY SSF52343 207 343 5.24E-37 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_1335 4890ef502558b118adb32ebe78c60f68 347 SUPERFAMILY SSF63380 107 207 1.07E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_3037 70d083ae4683d7cf1cb7be401f70db32 586 SUPERFAMILY SSF52091 458 565 5.1E-14 T 11-10-2018 IPR036513 STAS domain superfamily dqs_3037 70d083ae4683d7cf1cb7be401f70db32 586 Pfam PF01740 STAS domain 460 543 2.0E-11 T 11-10-2018 IPR002645 STAS domain dqs_3037 70d083ae4683d7cf1cb7be401f70db32 586 Pfam PF00916 Sulfate permease family 34 396 2.3E-87 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 dqs_3037 70d083ae4683d7cf1cb7be401f70db32 586 Gene3D G3DSA:3.30.750.24 444 570 2.6E-19 T 11-10-2018 IPR036513 STAS domain superfamily dqs_3037 70d083ae4683d7cf1cb7be401f70db32 586 TIGRFAM TIGR00815 sulP: sulfate permease 20 543 3.6E-116 T 11-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 PRINTS PR00342 Rhesus blood group protein signature 348 366 8.0E-8 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 PRINTS PR00342 Rhesus blood group protein signature 166 182 8.0E-8 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 PRINTS PR00342 Rhesus blood group protein signature 293 315 8.0E-8 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 PRINTS PR00342 Rhesus blood group protein signature 262 280 8.0E-8 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 Pfam PF00909 Ammonium Transporter Family 67 466 2.6E-123 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 ProSitePatterns PS01219 Ammonium transporters signature. 223 248 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 TIGRFAM TIGR00836 amt: ammonium transporter 65 466 6.9E-135 T 11-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 SUPERFAMILY SSF111352 61 447 2.09E-126 T 11-10-2018 dqs_3891 2ac6608c2ceb743197eb37aee5a7daba 468 Gene3D G3DSA:1.10.3430.10 40 468 3.1E-140 T 11-10-2018 IPR029020 Ammonium/urea transporter dqs_0625 89986122edccff04d0fdc64a87566528 298 Pfam PF10124 Mu-like prophage major head subunit gpT 8 297 7.4E-109 T 11-10-2018 IPR018774 Bacteriophage Mu, GpT dqs_0952 e6ac96129d5d23a822e4158b242d013f 362 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 360 23.694 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0952 e6ac96129d5d23a822e4158b242d013f 362 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 3.3E-5 T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0952 e6ac96129d5d23a822e4158b242d013f 362 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0952 e6ac96129d5d23a822e4158b242d013f 362 Pfam PF00953 Glycosyl transferase family 4 99 285 4.8E-33 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 dqs_0952 e6ac96129d5d23a822e4158b242d013f 362 ProSitePatterns PS01348 MraY family signature 2. 190 201 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0952 e6ac96129d5d23a822e4158b242d013f 362 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 362 1.6E-130 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_3048 06fd04d2f1f565cca71586e2774e690a 213 SUPERFAMILY SSF46689 14 85 1.8E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3048 06fd04d2f1f565cca71586e2774e690a 213 SUPERFAMILY SSF48498 96 210 1.78E-9 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_3048 06fd04d2f1f565cca71586e2774e690a 213 Pfam PF09209 Domain of unknown function (DUF1956) 102 205 2.2E-5 T 11-10-2018 IPR015292 Transcription regulator YbiH, C-terminal dqs_3048 06fd04d2f1f565cca71586e2774e690a 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 3.0E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_3048 06fd04d2f1f565cca71586e2774e690a 213 Gene3D G3DSA:1.10.357.10 13 213 1.8E-36 T 11-10-2018 dqs_2444 51ee51bc9c160f1a08a8178e56499a44 483 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 47 207 6.7E-34 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SMART SM00086 201 242 20.0 T 11-10-2018 IPR001610 PAC motif dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SMART SM00086 517 559 0.42 T 11-10-2018 IPR001610 PAC motif dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 433 565 1.8E-19 T 11-10-2018 IPR000014 PAS domain dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Gene3D G3DSA:3.20.20.450 743 993 5.8E-105 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Pfam PF13185 GAF domain 270 416 1.3E-23 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 567 728 6.4E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SUPERFAMILY SSF55781 238 417 3.05E-23 T 11-10-2018 dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SMART SM00065 258 425 0.0016 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SUPERFAMILY SSF141868 746 993 1.31E-95 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Gene3D G3DSA:3.30.450.40 254 420 2.3E-27 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SUPERFAMILY SSF55073 575 731 1.22E-55 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 PIRSF PIRSF005925 434 561 3.0 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 PIRSF PIRSF005925 545 1000 3.0E-151 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 PIRSF PIRSF005925 132 434 5.1E-7 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SMART SM00267 559 730 8.8E-73 T 11-10-2018 IPR000160 GGDEF domain dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Gene3D G3DSA:3.30.70.270 569 742 8.9E-66 T 11-10-2018 dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Pfam PF00989 PAS fold 436 556 3.4E-10 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SUPERFAMILY SSF55785 120 240 2.09E-14 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SUPERFAMILY SSF55785 423 557 1.05E-16 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Gene3D G3DSA:3.30.450.20 116 253 2.0E-15 T 11-10-2018 dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SMART SM00091 436 503 2.0E-10 T 11-10-2018 IPR000014 PAS domain dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SMART SM00091 130 196 3.7 T 11-10-2018 IPR000014 PAS domain dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Pfam PF00990 Diguanylate cyclase, GGDEF domain 570 725 9.4E-52 T 11-10-2018 IPR000160 GGDEF domain dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 SMART SM00052 740 986 1.5E-123 T 11-10-2018 IPR001633 EAL domain dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Pfam PF00563 EAL domain 746 981 1.6E-75 T 11-10-2018 IPR001633 EAL domain dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Gene3D G3DSA:3.30.450.20 433 568 3.3E-22 T 11-10-2018 dqs_3195 018ae1c4c536f124569a81659e2293ee 1006 Pfam PF08448 PAS fold 136 244 5.6E-13 T 11-10-2018 IPR013656 PAS fold-4 dqs_1595 a76c86733f4d1416df4ce2aaf2cc084f 257 Pfam PF02348 Cytidylyltransferase 6 227 8.1E-56 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 dqs_1595 a76c86733f4d1416df4ce2aaf2cc084f 257 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 3 247 5.2E-90 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 dqs_1595 a76c86733f4d1416df4ce2aaf2cc084f 257 SUPERFAMILY SSF53448 5 252 3.29E-61 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1595 a76c86733f4d1416df4ce2aaf2cc084f 257 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 2 254 43.306 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 dqs_1595 a76c86733f4d1416df4ce2aaf2cc084f 257 Gene3D G3DSA:3.90.550.10 2 254 1.3E-96 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 Pfam PF02830 V4R domain 123 184 1.3E-18 T 11-10-2018 IPR004096 4-vinyl reductase, 4VR dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 SUPERFAMILY SSF52540 230 472 4.48E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 Gene3D G3DSA:1.10.10.60 506 557 5.3E-11 T 11-10-2018 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 Gene3D G3DSA:3.30.1380.20 34 188 2.1E-7 T 11-10-2018 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 443 452 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 ProDom PD485437 REGULATOR TRANSCRIPTIONAL FIS-TYPE HELIX-TURN-HELIX ACTIVATOR PLASMID FAMILY PHENOL-DEGRADATIVE FIS SIGMA-54 9 137 4.0E-40 T 11-10-2018 IPR010523 Activator of aromatic catabolism dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 Pfam PF02954 Bacterial regulatory protein, Fis family 514 554 5.2E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 SMART SM00382 250 393 7.6E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 SUPERFAMILY SSF111126 14 179 2.56E-14 T 11-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 SUPERFAMILY SSF46689 443 554 9.41E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 Gene3D G3DSA:3.40.50.300 218 400 2.0E-65 T 11-10-2018 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 Pfam PF06505 Activator of aromatic catabolism 11 111 3.1E-39 T 11-10-2018 IPR010523 Activator of aromatic catabolism dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 Gene3D G3DSA:1.10.8.60 401 466 9.4E-22 T 11-10-2018 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 538 558 1.6E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 521 538 1.6E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 SMART SM00989 122 184 1.1E-26 T 11-10-2018 IPR004096 4-vinyl reductase, 4VR dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 Pfam PF00158 Sigma-54 interaction domain 230 396 8.1E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 316 331 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_2590 54cc84d801b0c075e4a0a36393c54da6 566 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 254 267 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 Gene3D G3DSA:3.40.50.150 75 269 3.0E-60 T 11-10-2018 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 PIRSF PIRSF000410 1 270 4.6E-96 T 11-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 Pfam PF03705 CheR methyltransferase, all-alpha domain 10 59 2.1E-14 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 SUPERFAMILY SSF53335 76 260 3.38E-55 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 SMART SM00138 8 267 7.3E-90 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 SUPERFAMILY SSF47757 4 75 1.05E-18 T 11-10-2018 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 Pfam PF01739 CheR methyltransferase, SAM binding domain 76 260 1.3E-55 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 Gene3D G3DSA:1.10.155.10 1 74 8.5E-22 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 PRINTS PR00996 Glutamate methyltransferase family signature 209 223 1.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 PRINTS PR00996 Glutamate methyltransferase family signature 104 124 1.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 PRINTS PR00996 Glutamate methyltransferase family signature 69 81 1.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 PRINTS PR00996 Glutamate methyltransferase family signature 228 251 1.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 1.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_0414 24c2f6c0e08c4e040bdec73addbe3df3 274 PRINTS PR00996 Glutamate methyltransferase family signature 137 153 1.2E-39 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SMART SM00387 387 498 4.0E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Gene3D G3DSA:3.40.50.2300 509 643 6.7E-20 T 11-10-2018 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Pfam PF00512 His Kinase A (phospho-acceptor) domain 279 343 1.9E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Gene3D G3DSA:3.30.450.20 9 145 3.3E-21 T 11-10-2018 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SUPERFAMILY SSF47384 266 343 8.63E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 388 497 7.5E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SUPERFAMILY SSF55785 135 257 2.09E-19 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Pfam PF00072 Response regulator receiver domain 516 626 7.3E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 142 264 1.8E-13 T 11-10-2018 IPR000014 PAS domain dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SMART SM00448 514 626 6.7E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Gene3D G3DSA:1.10.287.130 256 341 3.1E-19 T 11-10-2018 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SUPERFAMILY SSF52172 512 638 8.82E-23 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SUPERFAMILY SSF55874 333 496 8.64E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SUPERFAMILY SSF55785 12 127 1.15E-13 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Gene3D G3DSA:3.30.565.10 350 502 4.6E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SMART SM00388 279 343 1.4E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 451 1.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 495 1.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 437 1.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 476 1.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SMART SM00091 19 85 8.7E-4 T 11-10-2018 IPR000014 PAS domain dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 SMART SM00091 146 211 3.5 T 11-10-2018 IPR000014 PAS domain dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Pfam PF08448 PAS fold 153 261 6.2E-16 T 11-10-2018 IPR013656 PAS fold-4 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Pfam PF08448 PAS fold 29 135 3.1E-9 T 11-10-2018 IPR013656 PAS fold-4 dqs_2492 8ead4bdbe2d7760fc88bba74648ab0a3 646 Gene3D G3DSA:3.30.450.20 146 255 2.0E-27 T 11-10-2018 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Gene3D G3DSA:3.30.565.10 341 506 1.3E-49 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SUPERFAMILY SSF55874 331 503 1.01E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Gene3D G3DSA:3.40.50.2300 669 787 3.0E-41 T 11-10-2018 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 504 9.2E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SUPERFAMILY SSF52172 520 646 6.26E-27 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Gene3D G3DSA:3.40.50.12740 523 668 5.3E-28 T 11-10-2018 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Gene3D G3DSA:1.20.120.160 813 924 2.1E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SUPERFAMILY SSF47384 263 343 6.67E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Pfam PF01627 Hpt domain 834 903 5.1E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SMART SM00304 191 244 5.0E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SMART SM00387 389 505 4.6E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 483 2.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 444 2.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 458 2.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 502 2.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Gene3D G3DSA:1.10.287.130 241 340 3.3E-30 T 11-10-2018 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SMART SM00073 823 922 0.0077 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Pfam PF00672 HAMP domain 191 241 1.5E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SMART SM00448 523 641 1.8E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SMART SM00448 672 783 7.2E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Pfam PF17152 Periplasmic sensor domain 50 119 5.4E-13 T 11-10-2018 IPR033417 Periplasmic sensor domain CHASE8 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Pfam PF00512 His Kinase A (phospho-acceptor) domain 277 342 5.7E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SUPERFAMILY SSF47226 766 912 3.66E-19 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SMART SM00388 277 342 1.6E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 SUPERFAMILY SSF52172 670 788 2.42E-40 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Pfam PF00072 Response regulator receiver domain 525 639 8.8E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2546 2ce8d4428084a4f72ab34cc9113be041 1012 Pfam PF00072 Response regulator receiver domain 674 782 1.2E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3160 69fb2232e5264633092e24f9c27e7b03 94 SUPERFAMILY SSF54909 3 80 8.59E-20 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_3160 69fb2232e5264633092e24f9c27e7b03 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 8 79 2.0E-14 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain dqs_3160 69fb2232e5264633092e24f9c27e7b03 94 Gene3D G3DSA:3.30.70.100 1 92 1.8E-19 T 11-10-2018 dqs_0384 2a94a45a8b2fd234af359665e568e0ab 172 Pfam PF02036 SCP-2 sterol transfer family 75 161 9.0E-15 T 11-10-2018 IPR003033 SCP2 sterol-binding domain dqs_0384 2a94a45a8b2fd234af359665e568e0ab 172 SUPERFAMILY SSF55718 64 166 2.59E-17 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily dqs_0384 2a94a45a8b2fd234af359665e568e0ab 172 Gene3D G3DSA:3.30.1050.10 75 163 1.3E-5 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 Pfam PF02954 Bacterial regulatory protein, Fis family 308 347 1.0E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 Gene3D G3DSA:1.10.10.60 299 349 1.4E-9 T 11-10-2018 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 330 350 7.5E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 313 330 7.5E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 SMART SM00382 47 189 5.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 Gene3D G3DSA:1.10.8.60 198 273 1.7E-22 T 11-10-2018 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 SUPERFAMILY SSF46689 239 349 2.24E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 112 127 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 51 64 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 Gene3D G3DSA:3.40.50.300 14 197 8.5E-64 T 11-10-2018 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 Pfam PF00158 Sigma-54 interaction domain 28 192 2.5E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 SUPERFAMILY SSF52540 28 268 9.55E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2458 a11d0cd45b29a7faabc033f78c1cec17 362 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 239 248 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_1145 77a95f07b58fd6324efbef1a96912633 396 PIRSF PIRSF004925 10 395 1.1E-103 T 11-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter dqs_1145 77a95f07b58fd6324efbef1a96912633 396 Gene3D G3DSA:1.20.1250.20 11 193 3.9E-21 T 11-10-2018 dqs_1145 77a95f07b58fd6324efbef1a96912633 396 SUPERFAMILY SSF103473 13 385 4.05E-45 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_1145 77a95f07b58fd6324efbef1a96912633 396 Gene3D G3DSA:1.20.1250.20 207 384 5.2E-41 T 11-10-2018 dqs_1145 77a95f07b58fd6324efbef1a96912633 396 Pfam PF12832 MFS_1 like family 13 366 2.1E-73 T 11-10-2018 IPR024989 Major facilitator superfamily associated domain dqs_1826 9efdefc7c5456c50a11bac31287591df 357 Pfam PF04055 Radical SAM superfamily 80 229 4.5E-14 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_1826 9efdefc7c5456c50a11bac31287591df 357 Gene3D G3DSA:3.20.20.70 66 286 6.5E-34 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1826 9efdefc7c5456c50a11bac31287591df 357 SUPERFAMILY SSF102114 45 315 4.12E-41 T 11-10-2018 dqs_1826 9efdefc7c5456c50a11bac31287591df 357 PIRSF PIRSF004869 1 313 8.2E-92 T 11-10-2018 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted dqs_1826 9efdefc7c5456c50a11bac31287591df 357 TIGRFAM TIGR04337 AmmeMemoSam_rS: AmmeMemoRadiSam system radical SAM enzyme 5 353 6.3E-195 T 11-10-2018 IPR027596 AmmeMemoRadiSam system radical SAM enzyme dqs_1826 9efdefc7c5456c50a11bac31287591df 357 Pfam PF13353 4Fe-4S single cluster domain 72 166 1.3E-5 T 11-10-2018 dqs_3895 303dbc80017ba13c836265b0cb6c326d 401 SMART SM00471 159 295 5.5E-8 T 11-10-2018 IPR003607 HD/PDEase domain dqs_3895 303dbc80017ba13c836265b0cb6c326d 401 TIGRFAM TIGR00277 HDIG: HDIG domain 163 254 2.5E-7 T 11-10-2018 IPR006675 HDIG domain dqs_3895 303dbc80017ba13c836265b0cb6c326d 401 Pfam PF13487 HD domain 215 275 7.9E-16 T 11-10-2018 dqs_3895 303dbc80017ba13c836265b0cb6c326d 401 SUPERFAMILY SSF109604 156 325 1.96E-33 T 11-10-2018 dqs_3895 303dbc80017ba13c836265b0cb6c326d 401 Gene3D G3DSA:1.10.3210.10 2 327 4.0E-75 T 11-10-2018 dqs_3895 303dbc80017ba13c836265b0cb6c326d 401 Pfam PF11871 Domain of unknown function (DUF3391) 5 131 3.2E-33 T 11-10-2018 IPR021812 Protein of unknown function DUF3391 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 SUPERFAMILY SSF48150 4 211 1.57E-72 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 37 171 7.1E-19 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 SMART SM00525 189 209 9.1E-5 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 TIGRFAM TIGR01083 nth: endonuclease III 8 197 7.2E-82 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 SMART SM00478 41 188 3.0E-57 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 190 206 1.7E-5 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 Pfam PF00633 Helix-hairpin-helix motif 102 130 4.3E-9 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 Gene3D G3DSA:1.10.340.30 24 135 5.5E-76 T 11-10-2018 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 Hamap MF_00942 Endonuclease III [nth]. 3 212 37.53 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 Gene3D G3DSA:1.10.1670.10 14 206 5.5E-76 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 dqs_1559 90bc2458f287f693a053ed71acd67ec7 213 PIRSF PIRSF001435 1 213 1.0E-49 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 SUPERFAMILY SSF82693 136 326 4.19E-20 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Gene3D G3DSA:3.30.70.1430 558 650 0.0 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Gene3D G3DSA:3.30.70.1320 134 328 0.0 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 SUPERFAMILY SSF82693 40 134 3.14E-26 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Gene3D G3DSA:1.20.1640.10 504 1003 0.0 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 SUPERFAMILY SSF82866 787 1011 2.49E-51 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Pfam PF00873 AcrB/AcrD/AcrF family 4 1006 6.4E-300 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 359 380 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 606 620 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 7.8E-77 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Gene3D G3DSA:3.30.70.1440 651 846 0.0 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 SUPERFAMILY SSF82866 305 493 4.71E-48 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 SUPERFAMILY SSF82714 702 787 8.24E-19 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 SUPERFAMILY SSF82714 182 266 1.44E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Gene3D G3DSA:3.30.2090.10 178 271 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Gene3D G3DSA:3.30.70.1430 40 797 0.0 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 SUPERFAMILY SSF82693 556 650 1.1E-20 T 11-10-2018 dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Gene3D G3DSA:3.30.2090.10 701 789 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3266 74f13c1aa353f4cf71a605676ceb4f75 1027 Gene3D G3DSA:1.20.1640.10 10 503 0.0 T 11-10-2018 dqs_3156 31639e80e423ab5dc9fe9add228e9551 486 SUPERFAMILY SSF53720 7 483 1.02E-168 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_3156 31639e80e423ab5dc9fe9add228e9551 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_3156 31639e80e423ab5dc9fe9add228e9551 486 Gene3D G3DSA:3.40.605.10 13 480 1.3E-184 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_3156 31639e80e423ab5dc9fe9add228e9551 486 Pfam PF00171 Aldehyde dehydrogenase family 17 482 1.6E-171 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_3156 31639e80e423ab5dc9fe9add228e9551 486 Gene3D G3DSA:3.40.309.10 263 452 1.3E-184 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_3156 31639e80e423ab5dc9fe9add228e9551 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 286 297 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 dqs_3312 bc16690699428bdd5562d189d6517865 398 SMART SM00448 11 126 9.1E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3312 bc16690699428bdd5562d189d6517865 398 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 147 310 6.0E-20 T 11-10-2018 IPR000160 GGDEF domain dqs_3312 bc16690699428bdd5562d189d6517865 398 SUPERFAMILY SSF52172 10 152 3.7E-30 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3312 bc16690699428bdd5562d189d6517865 398 SUPERFAMILY SSF55073 156 310 1.7E-21 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3312 bc16690699428bdd5562d189d6517865 398 Pfam PF00072 Response regulator receiver domain 13 126 1.2E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3312 bc16690699428bdd5562d189d6517865 398 Gene3D G3DSA:3.40.50.2300 2 145 4.4E-27 T 11-10-2018 dqs_3312 bc16690699428bdd5562d189d6517865 398 SMART SM00267 139 312 9.5E-18 T 11-10-2018 IPR000160 GGDEF domain dqs_3312 bc16690699428bdd5562d189d6517865 398 Gene3D G3DSA:3.30.70.270 146 316 2.8E-26 T 11-10-2018 dqs_3312 bc16690699428bdd5562d189d6517865 398 Pfam PF00990 Diguanylate cyclase, GGDEF domain 152 308 5.4E-19 T 11-10-2018 IPR000160 GGDEF domain dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 1.7E-137 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 SUPERFAMILY SSF52540 151 337 4.28E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 PIRSF PIRSF002401 1 378 7.1E-133 T 11-10-2018 IPR035101 GTP-binding protein, Obg-type dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 11-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.6E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.6E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.6E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.6E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 SUPERFAMILY SSF82051 2 158 1.24E-54 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 Gene3D G3DSA:3.40.50.300 159 340 5.5E-52 T 11-10-2018 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 Pfam PF01926 50S ribosome-binding GTPase 161 285 2.3E-25 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 Gene3D G3DSA:2.70.210.12 1 158 6.5E-58 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 Hamap MF_01454 GTPase Obg [obg]. 2 334 47.469 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 dqs_3301 874b5b6b2a1320f942d75a6cb3e71e84 393 Pfam PF01018 GTP1/OBG 5 158 3.3E-56 T 11-10-2018 IPR006169 GTP1/OBG domain dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 SUPERFAMILY SSF47384 350 427 8.83E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 SUPERFAMILY SSF55874 416 587 5.76E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 Gene3D G3DSA:1.10.287.130 337 424 8.0E-17 T 11-10-2018 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 530 5.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 563 5.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 570 583 5.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 544 5.2E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 41 281 1.4E-30 T 11-10-2018 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 Pfam PF00512 His Kinase A (phospho-acceptor) domain 360 426 7.4E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 Gene3D G3DSA:3.40.190.10 41 272 3.1E-13 T 11-10-2018 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 SUPERFAMILY SSF53850 37 283 1.24E-14 T 11-10-2018 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 SMART SM00388 359 429 2.4E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 SMART SM00387 471 586 1.4E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 472 583 7.5E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 Gene3D G3DSA:3.30.565.10 433 588 3.7E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2818 f8bd11136f0c1dc85f44f21f59e021eb 601 Gene3D G3DSA:3.40.190.10 126 242 3.1E-13 T 11-10-2018 dqs_1479 632027bd88d9a305862dade73ca573a7 947 SMART SM00267 499 671 5.4E-64 T 11-10-2018 IPR000160 GGDEF domain dqs_1479 632027bd88d9a305862dade73ca573a7 947 SUPERFAMILY SSF141868 686 933 9.55E-91 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1479 632027bd88d9a305862dade73ca573a7 947 Gene3D G3DSA:3.30.70.270 510 683 1.8E-61 T 11-10-2018 dqs_1479 632027bd88d9a305862dade73ca573a7 947 SMART SM01049 58 152 1.7E-21 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_1479 632027bd88d9a305862dade73ca573a7 947 Gene3D G3DSA:3.20.20.450 684 936 4.0E-102 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1479 632027bd88d9a305862dade73ca573a7 947 Pfam PF00563 EAL domain 688 922 5.2E-71 T 11-10-2018 IPR001633 EAL domain dqs_1479 632027bd88d9a305862dade73ca573a7 947 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 506 670 4.6E-41 T 11-10-2018 IPR000160 GGDEF domain dqs_1479 632027bd88d9a305862dade73ca573a7 947 Pfam PF13426 PAS domain 397 497 2.7E-11 T 11-10-2018 IPR000014 PAS domain dqs_1479 632027bd88d9a305862dade73ca573a7 947 Pfam PF08269 Cache domain 23 314 3.2E-60 T 11-10-2018 IPR004010 Double Cache domain 2 dqs_1479 632027bd88d9a305862dade73ca573a7 947 Gene3D G3DSA:3.30.450.20 61 209 2.1E-35 T 11-10-2018 dqs_1479 632027bd88d9a305862dade73ca573a7 947 Gene3D G3DSA:3.30.450.20 210 323 1.1E-5 T 11-10-2018 dqs_1479 632027bd88d9a305862dade73ca573a7 947 SMART SM00091 386 451 6.8E-5 T 11-10-2018 IPR000014 PAS domain dqs_1479 632027bd88d9a305862dade73ca573a7 947 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 391 504 9.5E-15 T 11-10-2018 IPR000014 PAS domain dqs_1479 632027bd88d9a305862dade73ca573a7 947 Gene3D G3DSA:3.30.450.20 386 509 5.1E-23 T 11-10-2018 dqs_1479 632027bd88d9a305862dade73ca573a7 947 SMART SM00052 681 927 5.4E-119 T 11-10-2018 IPR001633 EAL domain dqs_1479 632027bd88d9a305862dade73ca573a7 947 SUPERFAMILY SSF55073 515 673 5.81E-50 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1479 632027bd88d9a305862dade73ca573a7 947 Pfam PF00990 Diguanylate cyclase, GGDEF domain 510 667 1.3E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_1479 632027bd88d9a305862dade73ca573a7 947 SUPERFAMILY SSF55785 397 507 5.39E-20 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 Pfam PF13180 PDZ domain 266 356 1.6E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 Gene3D G3DSA:2.30.42.10 260 366 8.0E-25 T 11-10-2018 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 SUPERFAMILY SSF50156 223 347 9.2E-22 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 SUPERFAMILY SSF50156 381 470 7.06E-8 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 6.8E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 PRINTS PR00834 HtrA/DegQ protease family signature 219 236 6.8E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 PRINTS PR00834 HtrA/DegQ protease family signature 163 187 6.8E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 PRINTS PR00834 HtrA/DegQ protease family signature 197 214 6.8E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 PRINTS PR00834 HtrA/DegQ protease family signature 305 317 6.8E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 6.8E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 31 467 9.8E-140 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 Pfam PF13365 Trypsin-like peptidase domain 93 226 2.5E-34 T 11-10-2018 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 Gene3D G3DSA:2.30.42.10 379 472 1.2E-10 T 11-10-2018 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 SMART SM00228 379 461 0.0036 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 SMART SM00228 265 347 1.9E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 SUPERFAMILY SSF50494 29 256 9.95E-65 T 11-10-2018 IPR009003 Peptidase S1, PA clan dqs_1759 54e76175124077de50fb2e4e4714a6ed 472 Gene3D G3DSA:2.40.10.120 29 258 8.2E-80 T 11-10-2018 dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 SMART SM00086 494 536 5.5E-4 T 11-10-2018 IPR001610 PAC motif dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 SMART SM00091 547 614 0.0013 T 11-10-2018 IPR000014 PAS domain dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 836 1001 1.5E-51 T 11-10-2018 IPR000160 GGDEF domain dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Gene3D G3DSA:3.30.70.270 838 1003 2.5E-56 T 11-10-2018 dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Gene3D G3DSA:3.30.450.40 672 837 5.4E-5 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Pfam PF11845 Protein of unknown function (DUF3365) 15 190 1.2E-21 T 11-10-2018 IPR021796 Protein of unknown function DUF3365 dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Pfam PF00990 Diguanylate cyclase, GGDEF domain 840 997 6.1E-45 T 11-10-2018 IPR000160 GGDEF domain dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Pfam PF13185 GAF domain 265 400 2.9E-20 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Gene3D G3DSA:3.30.450.20 536 668 3.2E-11 T 11-10-2018 dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Gene3D G3DSA:3.30.450.20 411 484 3.1E-6 T 11-10-2018 dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 SMART SM00267 829 1002 6.1E-61 T 11-10-2018 IPR000160 GGDEF domain dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Gene3D G3DSA:2.10.70.100 491 535 3.7E-7 T 11-10-2018 dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 SUPERFAMILY SSF55781 702 840 4.49E-7 T 11-10-2018 dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 Gene3D G3DSA:3.30.450.40 264 405 2.3E-5 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 SUPERFAMILY SSF55785 542 639 5.23E-7 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 SUPERFAMILY SSF55785 403 534 2.44E-10 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 SUPERFAMILY SSF55073 845 1000 2.12E-45 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2552 1dd2644a03faaa8b4883201586edb2b5 1005 SUPERFAMILY SSF55781 270 412 1.41E-8 T 11-10-2018 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 SUPERFAMILY SSF52374 3 654 1.81E-132 T 11-10-2018 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 923 20.795 T 11-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 646 3.5E-192 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 SUPERFAMILY SSF50677 201 401 2.83E-49 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 Pfam PF08264 Anticodon-binding domain of tRNA 691 844 1.6E-27 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 Pfam PF06827 Zinc finger found in FPG and IleRS 894 920 3.0E-9 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 SUPERFAMILY SSF47323 658 922 2.06E-67 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 Gene3D G3DSA:1.10.730.20 646 923 1.0E-86 T 11-10-2018 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 Gene3D G3DSA:3.40.50.620 25 635 1.3E-222 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 529 542 3.2E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 399 414 3.2E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 235 258 3.2E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 567 576 3.2E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 3.2E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 Gene3D G3DSA:3.90.740.10 192 406 1.3E-222 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 dqs_1320 0bdc07ae2db6b46614c546f41395ebb1 932 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 845 1.0E-260 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 dqs_1571 a34781b82672c6e21e1d4a82acb117d1 184 Pfam PF05280 Flagellar transcriptional activator (FlhC) 1 172 5.5E-82 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 dqs_1571 a34781b82672c6e21e1d4a82acb117d1 184 PIRSF PIRSF003159 1 181 1.7E-91 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 dqs_1571 a34781b82672c6e21e1d4a82acb117d1 184 SUPERFAMILY SSF160930 6 160 3.27E-62 T 11-10-2018 dqs_1571 a34781b82672c6e21e1d4a82acb117d1 184 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 1 171 7.0E-64 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 dqs_1571 a34781b82672c6e21e1d4a82acb117d1 184 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 1 184 44.424 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 dqs_1956 00828f24837d0617456c6d97fd6740cd 218 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 19 166 8.4E-34 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 dqs_1956 00828f24837d0617456c6d97fd6740cd 218 PIRSF PIRSF004682 12 203 6.0E-52 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 dqs_1956 00828f24837d0617456c6d97fd6740cd 218 Pfam PF13242 HAD-hyrolase-like 122 193 1.2E-14 T 11-10-2018 dqs_1956 00828f24837d0617456c6d97fd6740cd 218 Gene3D G3DSA:3.40.50.1000 11 196 3.9E-50 T 11-10-2018 IPR023214 HAD superfamily dqs_1956 00828f24837d0617456c6d97fd6740cd 218 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 20 167 1.3E-28 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 dqs_1956 00828f24837d0617456c6d97fd6740cd 218 SUPERFAMILY SSF56784 19 193 5.86E-46 T 11-10-2018 IPR036412 HAD-like superfamily dqs_1990 8f80ebe27bbc9499c7fca2d064ed031f 149 Gene3D G3DSA:3.40.50.620 1 145 7.6E-32 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1990 8f80ebe27bbc9499c7fca2d064ed031f 149 Pfam PF00582 Universal stress protein family 1 145 8.8E-27 T 11-10-2018 IPR006016 UspA dqs_1990 8f80ebe27bbc9499c7fca2d064ed031f 149 SUPERFAMILY SSF52402 1 145 6.03E-32 T 11-10-2018 dqs_1990 8f80ebe27bbc9499c7fca2d064ed031f 149 PRINTS PR01438 Universal stress protein signature 105 117 8.1E-14 T 11-10-2018 IPR006015 Universal stress protein A dqs_1990 8f80ebe27bbc9499c7fca2d064ed031f 149 PRINTS PR01438 Universal stress protein signature 123 145 8.1E-14 T 11-10-2018 IPR006015 Universal stress protein A dqs_1990 8f80ebe27bbc9499c7fca2d064ed031f 149 PRINTS PR01438 Universal stress protein signature 2 20 8.1E-14 T 11-10-2018 IPR006015 Universal stress protein A dqs_2255 aaaaf09d4ec6d8646f52e64dfa25af6b 208 SUPERFAMILY SSF52266 27 202 1.83E-33 T 11-10-2018 dqs_2255 aaaaf09d4ec6d8646f52e64dfa25af6b 208 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 190 2.6E-22 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain dqs_2255 aaaaf09d4ec6d8646f52e64dfa25af6b 208 Gene3D G3DSA:3.40.50.1110 30 205 1.5E-41 T 11-10-2018 IPR036514 SGNH hydrolase superfamily dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 Gene3D G3DSA:3.40.1190.10 91 312 5.3E-58 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 SUPERFAMILY SSF53623 95 307 1.96E-51 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 Pfam PF02875 Mur ligase family, glutamate ligase domain 310 362 6.9E-9 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 SUPERFAMILY SSF53244 309 446 3.92E-36 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 Pfam PF01225 Mur ligase family, catalytic domain 2 99 5.9E-19 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 447 58.024 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 Gene3D G3DSA:3.90.190.20 313 448 4.7E-26 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 446 1.3E-211 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 SUPERFAMILY SSF51984 1 90 1.96E-21 T 11-10-2018 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 Gene3D G3DSA:3.40.50.720 1 90 8.2E-36 T 11-10-2018 dqs_0939 e1d0c0fcf779dbc9bf94eee9fc82f3c4 448 Pfam PF08245 Mur ligase middle domain 108 290 8.1E-24 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 132 146 3.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 203 220 3.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 166 184 3.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 232 243 3.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 254 263 3.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 284 38.432 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 Pfam PF01039 Carboxyl transferase domain 108 243 1.1E-15 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 286 1.6E-121 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 SUPERFAMILY SSF52096 28 286 1.26E-84 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_1157 2e6b95dcb13b1bcfb642151dfbf094de 290 Gene3D G3DSA:3.90.226.10 28 288 1.4E-84 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 8 936 3.1E-289 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:3.40.50.300 1502 1853 2.9E-130 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:3.40.50.300 10 590 9.2E-222 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:1.20.1580.10 94 487 9.2E-222 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:3.30.190.20 134 235 9.2E-222 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 SMART SM00382 1003 1450 4.3 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 SMART SM00382 628 933 1.0 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 SMART SM00382 1518 1823 3.9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 SUPERFAMILY SSF52540 8 564 2.36E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 SUPERFAMILY SSF52540 985 1455 1.4E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 ProSitePatterns PS00211 ABC transporters family signature. 1373 1387 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 ProSitePatterns PS00211 ABC transporters family signature. 1731 1745 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:3.40.50.300 1255 1483 1.1E-55 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:3.40.50.300 973 1088 6.9E-25 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 SUPERFAMILY SSF52540 615 923 3.68E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:1.20.1580.10 1593 1731 2.9E-130 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:1.20.1580.10 691 829 3.9E-128 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:3.40.50.300 612 948 3.9E-128 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:1.10.8.280 286 394 9.2E-222 T 11-10-2018 dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 SUPERFAMILY SSF52540 1500 1826 7.44E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0098 65344995b50e3acaab0ed8ea613ece11 1869 Gene3D G3DSA:3.30.190.20 1105 1229 1.2E-28 T 11-10-2018 dqs_0120 bc4bc550cc66b78c1e89a4596d4575bd 292 SUPERFAMILY SSF51182 14 287 1.11E-74 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_0120 bc4bc550cc66b78c1e89a4596d4575bd 292 Pfam PF02678 Pirin 20 124 2.8E-31 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 dqs_0120 bc4bc550cc66b78c1e89a4596d4575bd 292 PIRSF PIRSF006232 3 283 2.5E-85 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 dqs_0120 bc4bc550cc66b78c1e89a4596d4575bd 292 Gene3D G3DSA:2.60.120.10 14 270 6.0E-68 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_0120 bc4bc550cc66b78c1e89a4596d4575bd 292 Gene3D G3DSA:2.60.120.10 146 245 6.0E-68 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_0120 bc4bc550cc66b78c1e89a4596d4575bd 292 Pfam PF05726 Pirin C-terminal cupin domain 177 274 5.7E-24 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 dqs_3602 cc3ac7ee9b70e3ff461c5545686c5c1b 188 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 6 188 37.854 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 dqs_3602 cc3ac7ee9b70e3ff461c5545686c5c1b 188 Gene3D G3DSA:3.40.1740.10 4 188 1.3E-67 T 11-10-2018 dqs_3602 cc3ac7ee9b70e3ff461c5545686c5c1b 188 Pfam PF02622 Uncharacterized ACR, COG1678 17 175 4.7E-47 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 dqs_3602 cc3ac7ee9b70e3ff461c5545686c5c1b 188 SUPERFAMILY SSF143456 7 188 2.09E-64 T 11-10-2018 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Pfam PF13426 PAS domain 31 132 1.5E-15 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 276 405 6.3E-11 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 19 140 7.6E-22 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 402 526 1.2E-11 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 170 265 3.2E-9 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Gene3D G3DSA:3.30.450.20 144 212 1.0E-22 T 11-10-2018 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 PRINTS PR00344 Bacterial sensor protein C-terminal signature 722 740 9.6E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 PRINTS PR00344 Bacterial sensor protein C-terminal signature 688 702 9.6E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 PRINTS PR00344 Bacterial sensor protein C-terminal signature 706 716 9.6E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 PRINTS PR00344 Bacterial sensor protein C-terminal signature 746 759 9.6E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SUPERFAMILY SSF55785 395 516 4.35E-18 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00091 280 348 0.16 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00091 406 472 0.0015 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00091 145 213 0.0011 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00091 19 85 0.0013 T 11-10-2018 IPR000014 PAS domain dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00448 785 899 7.9E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Pfam PF00072 Response regulator receiver domain 787 899 3.6E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Gene3D G3DSA:3.40.50.12740 784 915 7.2E-38 T 11-10-2018 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Gene3D G3DSA:3.30.450.20 272 394 2.9E-30 T 11-10-2018 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 652 759 6.9E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Gene3D G3DSA:3.30.450.20 15 143 1.0E-32 T 11-10-2018 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SUPERFAMILY SSF55874 595 758 1.57E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SUPERFAMILY SSF55785 130 258 6.98E-21 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Gene3D G3DSA:3.30.450.20 400 518 2.8E-17 T 11-10-2018 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Pfam PF08448 PAS fold 413 520 7.4E-9 T 11-10-2018 IPR013656 PAS fold-4 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SUPERFAMILY SSF55785 30 130 8.03E-31 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Pfam PF00512 His Kinase A (phospho-acceptor) domain 540 606 1.3E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00388 540 606 3.9E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Pfam PF08447 PAS fold 305 392 3.3E-19 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Pfam PF08447 PAS fold 168 255 1.1E-20 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00086 219 261 2.4E-7 T 11-10-2018 IPR001610 PAC motif dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00086 91 133 6.2E-8 T 11-10-2018 IPR001610 PAC motif dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00086 478 520 17.0 T 11-10-2018 IPR001610 PAC motif dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00086 355 398 8.6E-9 T 11-10-2018 IPR001610 PAC motif dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SMART SM00387 651 762 2.5E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SUPERFAMILY SSF47384 526 607 3.14E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Gene3D G3DSA:2.10.70.100 215 262 2.1E-21 T 11-10-2018 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SUPERFAMILY SSF55785 287 400 1.92E-20 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 SUPERFAMILY SSF52172 785 905 1.99E-34 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Gene3D G3DSA:1.10.287.130 519 604 5.1E-27 T 11-10-2018 dqs_2594 03c976235220a6eef5d7b628e7af18d0 916 Gene3D G3DSA:3.30.565.10 605 762 1.4E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 Pfam PF00106 short chain dehydrogenase 11 198 1.4E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 SUPERFAMILY SSF51735 5 263 1.18E-61 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 5.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 5.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 5.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 5.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 5.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 8.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1889 eecfdb84394d7d771131cc521e71dca3 314 Gene3D G3DSA:3.40.50.720 2 271 1.1E-63 T 11-10-2018 dqs_0330 f42541a7b0e2b465a53481b2f4058a40 155 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 5 137 20.629 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 dqs_0330 f42541a7b0e2b465a53481b2f4058a40 155 Pfam PF01029 NusB family 8 133 3.7E-30 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 dqs_0330 f42541a7b0e2b465a53481b2f4058a40 155 Gene3D G3DSA:1.10.940.10 2 140 1.6E-40 T 11-10-2018 IPR035926 NusB-like superfamily dqs_0330 f42541a7b0e2b465a53481b2f4058a40 155 SUPERFAMILY SSF48013 5 137 2.88E-38 T 11-10-2018 IPR035926 NusB-like superfamily dqs_0330 f42541a7b0e2b465a53481b2f4058a40 155 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 7 135 1.8E-37 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 dqs_2186 8e5cc1263a208de48047428dd5b8be40 482 Pfam PF01476 LysM domain 332 364 0.0016 T 11-10-2018 IPR018392 LysM domain dqs_2186 8e5cc1263a208de48047428dd5b8be40 482 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 123 151 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 dqs_2186 8e5cc1263a208de48047428dd5b8be40 482 SUPERFAMILY SSF53955 102 253 1.46E-39 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_2186 8e5cc1263a208de48047428dd5b8be40 482 Gene3D G3DSA:3.10.350.10 275 316 8.3E-9 T 11-10-2018 IPR036779 LysM domain superfamily dqs_2186 8e5cc1263a208de48047428dd5b8be40 482 Gene3D G3DSA:3.10.350.10 317 375 8.3E-9 T 11-10-2018 IPR036779 LysM domain superfamily dqs_2186 8e5cc1263a208de48047428dd5b8be40 482 Pfam PF01464 Transglycosylase SLT domain 112 210 6.9E-24 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 dqs_2186 8e5cc1263a208de48047428dd5b8be40 482 SUPERFAMILY SSF54106 329 375 2.75E-6 T 11-10-2018 dqs_2186 8e5cc1263a208de48047428dd5b8be40 482 Gene3D G3DSA:1.10.530.10 101 246 2.1E-29 T 11-10-2018 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 Pfam PF00672 HAMP domain 179 228 4.0E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 SUPERFAMILY SSF158472 179 229 3.4E-5 T 11-10-2018 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 436 1.7E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 SUPERFAMILY SSF47384 216 286 5.89E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 377 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 416 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 435 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 391 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 SMART SM00388 232 290 1.4E-5 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 SUPERFAMILY SSF55874 292 439 2.1E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 SMART SM00304 179 231 4.1E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 Gene3D G3DSA:1.10.287.130 183 291 1.6E-19 T 11-10-2018 dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 SMART SM00387 329 438 3.6E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2881 d1c70743a6075a894a40ed09ef9b21a8 444 Gene3D G3DSA:3.30.565.10 295 441 1.7E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Gene3D G3DSA:3.30.450.20 821 946 4.3E-18 T 11-10-2018 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00086 894 936 3.9E-8 T 11-10-2018 IPR001610 PAC motif dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00086 1016 1058 0.001 T 11-10-2018 IPR001610 PAC motif dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00086 368 408 8.5 T 11-10-2018 IPR001610 PAC motif dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00086 605 645 4.6 T 11-10-2018 IPR001610 PAC motif dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00086 487 527 50.0 T 11-10-2018 IPR001610 PAC motif dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SUPERFAMILY SSF55785 950 1056 3.21E-30 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SUPERFAMILY SSF55073 1074 1230 8.63E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Pfam PF08448 PAS fold 835 937 5.9E-12 T 11-10-2018 IPR013656 PAS fold-4 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Pfam PF08448 PAS fold 317 409 3.3E-5 T 11-10-2018 IPR013656 PAS fold-4 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SUPERFAMILY SSF55785 524 643 2.09E-20 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SUPERFAMILY SSF55785 427 536 5.86E-24 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SUPERFAMILY SSF55781 673 819 2.62E-16 T 11-10-2018 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Gene3D G3DSA:3.30.450.20 947 1067 2.1E-34 T 11-10-2018 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00065 672 818 2.4E-5 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 1065 1228 5.7E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00091 416 482 5.7E-8 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00091 535 600 1.6E-4 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00091 944 1010 2.5E-10 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00091 297 363 4.3 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00091 822 889 1.5 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SUPERFAMILY SSF55785 813 934 4.01E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Gene3D G3DSA:3.30.450.20 291 405 9.9E-12 T 11-10-2018 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SMART SM00267 1058 1230 2.9E-69 T 11-10-2018 IPR000160 GGDEF domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 819 943 9.2E-10 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 294 415 3.1E-12 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 534 650 4.9E-17 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 939 1065 7.6E-21 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 421 534 1.5E-20 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 SUPERFAMILY SSF55785 316 417 5.17E-14 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Pfam PF01590 GAF domain 673 808 3.3E-8 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Pfam PF13426 PAS domain 549 644 1.5E-9 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Pfam PF13426 PAS domain 427 525 7.8E-11 T 11-10-2018 IPR000014 PAS domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Pfam PF00989 PAS fold 951 1055 2.2E-16 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Gene3D G3DSA:3.30.450.40 648 820 9.0E-18 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Gene3D G3DSA:3.30.450.20 406 523 1.5E-28 T 11-10-2018 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Gene3D G3DSA:3.30.450.20 524 642 3.3E-26 T 11-10-2018 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Pfam PF00990 Diguanylate cyclase, GGDEF domain 1069 1225 2.8E-50 T 11-10-2018 IPR000160 GGDEF domain dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Pfam PF05231 MASE1 16 291 1.1E-32 T 11-10-2018 IPR007895 MASE1 dqs_2847 4c33dc287d932b342baabe7b7ee59809 1255 Gene3D G3DSA:3.30.70.270 1068 1240 5.0E-61 T 11-10-2018 dqs_3824 7794dcdf66b7ecd9ded47128e2d1008e 177 Gene3D G3DSA:3.10.180.10 1 163 1.5E-32 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3824 7794dcdf66b7ecd9ded47128e2d1008e 177 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 113 132 - T 11-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 dqs_3824 7794dcdf66b7ecd9ded47128e2d1008e 177 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 133 1.4E-14 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_3824 7794dcdf66b7ecd9ded47128e2d1008e 177 SUPERFAMILY SSF54593 1 139 1.13E-34 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3788 413e8ebcdad98765a99dc03ecfef6856 373 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 26 158 1.1E-53 T 11-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 dqs_3788 413e8ebcdad98765a99dc03ecfef6856 373 Gene3D G3DSA:1.10.3210.10 1 368 4.4E-129 T 11-10-2018 dqs_3788 413e8ebcdad98765a99dc03ecfef6856 373 SUPERFAMILY SSF109604 14 367 4.82E-87 T 11-10-2018 dqs_3788 413e8ebcdad98765a99dc03ecfef6856 373 Pfam PF13286 Phosphohydrolase-associated domain 280 365 1.9E-26 T 11-10-2018 IPR026875 Phosphohydrolase-associated domain dqs_3788 413e8ebcdad98765a99dc03ecfef6856 373 SMART SM00471 59 203 3.8E-11 T 11-10-2018 IPR003607 HD/PDEase domain dqs_3788 413e8ebcdad98765a99dc03ecfef6856 373 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 3 367 37.684 T 11-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 dqs_3788 413e8ebcdad98765a99dc03ecfef6856 373 Pfam PF01966 HD domain 63 192 2.1E-15 T 11-10-2018 IPR006674 HD domain dqs_0475 26dbf3435dbb253531ac79bdd56a63e6 490 Pfam PF00108 Thiolase, N-terminal domain 66 340 6.2E-57 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 dqs_0475 26dbf3435dbb253531ac79bdd56a63e6 490 ProSitePatterns PS00737 Thiolases signature 2. 433 449 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 dqs_0475 26dbf3435dbb253531ac79bdd56a63e6 490 Pfam PF02803 Thiolase, C-terminal domain 349 487 4.9E-36 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 dqs_0475 26dbf3435dbb253531ac79bdd56a63e6 490 ProSitePatterns PS00099 Thiolases active site. 470 483 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 dqs_0475 26dbf3435dbb253531ac79bdd56a63e6 490 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 68 487 4.1E-125 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_0475 26dbf3435dbb253531ac79bdd56a63e6 490 SUPERFAMILY SSF53901 349 487 7.78E-34 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0475 26dbf3435dbb253531ac79bdd56a63e6 490 SUPERFAMILY SSF53901 65 348 2.05E-64 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2720 feba147a20780036a65be8fcd41cb0ba 470 Pfam PF04972 BON domain 325 392 3.7E-15 T 11-10-2018 IPR007055 BON domain dqs_3010 f4f629dc1cc2bcb93987e039a5bbd303 192 Pfam PF04264 YceI-like domain 28 189 4.5E-39 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like dqs_3010 f4f629dc1cc2bcb93987e039a5bbd303 192 Gene3D G3DSA:2.40.128.110 26 192 1.8E-49 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily dqs_3010 f4f629dc1cc2bcb93987e039a5bbd303 192 SMART SM00867 27 190 5.6E-64 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like dqs_3010 f4f629dc1cc2bcb93987e039a5bbd303 192 SUPERFAMILY SSF101874 25 191 6.93E-53 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily dqs_2368 94d458d11989e3a73e3d55e419fca542 383 Gene3D G3DSA:3.40.50.2000 208 363 1.5E-133 T 11-10-2018 dqs_2368 94d458d11989e3a73e3d55e419fca542 383 SUPERFAMILY SSF53756 34 373 1.57E-13 T 11-10-2018 dqs_2368 94d458d11989e3a73e3d55e419fca542 383 Gene3D G3DSA:3.40.50.11010 20 369 1.5E-133 T 11-10-2018 dqs_1358 2c7a8710d4563ae13714428bed7b02b1 463 SUPERFAMILY SSF53187 228 448 4.08E-56 T 11-10-2018 dqs_1358 2c7a8710d4563ae13714428bed7b02b1 463 Gene3D G3DSA:2.60.40.3500 51 168 3.4E-30 T 11-10-2018 dqs_1358 2c7a8710d4563ae13714428bed7b02b1 463 Pfam PF11741 AMIN domain 62 165 8.2E-23 T 11-10-2018 IPR021731 AMIN domain dqs_1358 2c7a8710d4563ae13714428bed7b02b1 463 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 230 445 7.2E-50 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 dqs_1358 2c7a8710d4563ae13714428bed7b02b1 463 Gene3D G3DSA:3.40.630.40 216 456 7.7E-82 T 11-10-2018 dqs_1358 2c7a8710d4563ae13714428bed7b02b1 463 SMART SM00646 290 445 7.8E-64 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 dqs_1629 33ae945eef635a74d359405470143321 358 Gene3D G3DSA:3.30.70.2130 96 212 2.2E-6 T 11-10-2018 dqs_1629 33ae945eef635a74d359405470143321 358 PIRSF PIRSF015283 1 335 7.5E-97 T 11-10-2018 IPR016631 Regulatory, RpfE dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.9E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.9E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.9E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 Pfam PF00106 short chain dehydrogenase 12 195 6.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 Gene3D G3DSA:3.40.50.720 9 254 3.0E-60 T 11-10-2018 dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 SUPERFAMILY SSF51735 11 251 4.45E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0395 5e3e2023c083f40ce1f20d72819d0267 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_3641 68f628ba748c89597769466d136c1748 667 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 556 664 2.0E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3641 68f628ba748c89597769466d136c1748 667 Gene3D G3DSA:3.30.565.10 509 662 1.0E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3641 68f628ba748c89597769466d136c1748 667 Gene3D G3DSA:1.10.287.130 451 508 1.0E-30 T 11-10-2018 dqs_3641 68f628ba748c89597769466d136c1748 667 SUPERFAMILY SSF55874 508 663 3.93E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3641 68f628ba748c89597769466d136c1748 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 609 1.3E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3641 68f628ba748c89597769466d136c1748 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 643 1.3E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3641 68f628ba748c89597769466d136c1748 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 649 662 1.3E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3641 68f628ba748c89597769466d136c1748 667 SMART SM00387 553 665 1.4E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 SUPERFAMILY SSF46785 182 261 1.86E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 225 240 5.7E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 225 5.7E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 Gene3D G3DSA:1.10.10.10 181 263 1.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 SUPERFAMILY SSF51206 41 178 1.83E-26 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 Pfam PF13545 Crp-like helix-turn-helix domain 184 258 1.7E-19 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 Pfam PF00027 Cyclic nucleotide-binding domain 65 149 1.6E-13 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 Gene3D G3DSA:2.60.120.10 59 179 2.1E-39 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 SMART SM00419 203 251 1.1E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1473 767addcd3d1ad085b2c6221d8cc0aa4c 266 SMART SM00100 46 164 6.8E-8 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 Gene3D G3DSA:3.40.50.1240 1 248 3.1E-87 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 141 214 9.4E-5 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 127 1.8E-30 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 PIRSF PIRSF000709 140 246 0.0061 T 11-10-2018 dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 PIRSF PIRSF000709 2 110 8.4E-7 T 11-10-2018 dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 SMART SM00855 3 189 1.5E-26 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 3 246 3.3E-117 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 228 45.373 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 11-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 dqs_2947 a5a61bbe5dc8556fb2356e3dcb900391 249 SUPERFAMILY SSF53254 1 244 1.94E-76 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_3575 cca7d8c0fc1663f1a028aed4c0af87a4 469 Gene3D G3DSA:1.10.45.10 424 464 1.1E-13 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 dqs_3575 cca7d8c0fc1663f1a028aed4c0af87a4 469 SUPERFAMILY SSF56176 11 223 1.82E-70 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_3575 cca7d8c0fc1663f1a028aed4c0af87a4 469 Pfam PF01565 FAD binding domain 49 186 6.9E-38 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 dqs_3575 cca7d8c0fc1663f1a028aed4c0af87a4 469 SUPERFAMILY SSF55103 226 467 3.92E-75 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 dqs_3575 cca7d8c0fc1663f1a028aed4c0af87a4 469 Pfam PF02913 FAD linked oxidases, C-terminal domain 223 463 2.0E-65 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 dqs_3575 cca7d8c0fc1663f1a028aed4c0af87a4 469 Gene3D G3DSA:3.30.70.2740 342 423 1.1E-12 T 11-10-2018 dqs_3575 cca7d8c0fc1663f1a028aed4c0af87a4 469 Gene3D G3DSA:3.30.465.40 24 239 2.5E-74 T 11-10-2018 dqs_4068 7bfaa2a3f7a013f9d8bddc75f928c5e6 437 SUPERFAMILY SSF54373 274 364 7.46E-19 T 11-10-2018 dqs_4068 7bfaa2a3f7a013f9d8bddc75f928c5e6 437 Gene3D G3DSA:3.50.50.60 1 76 8.6E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4068 7bfaa2a3f7a013f9d8bddc75f928c5e6 437 Gene3D G3DSA:3.30.9.10 134 366 1.3E-55 T 11-10-2018 dqs_4068 7bfaa2a3f7a013f9d8bddc75f928c5e6 437 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 415 48.463 T 11-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 dqs_4068 7bfaa2a3f7a013f9d8bddc75f928c5e6 437 SUPERFAMILY SSF51905 1 423 6.86E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4068 7bfaa2a3f7a013f9d8bddc75f928c5e6 437 Pfam PF01266 FAD dependent oxidoreductase 2 402 2.4E-72 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_4068 7bfaa2a3f7a013f9d8bddc75f928c5e6 437 Gene3D G3DSA:3.50.50.60 104 408 1.3E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 233 245 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 97 116 1.9E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 77 97 1.9E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 230 255 1.9E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 185 205 1.9E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 58 77 1.9E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 206 227 1.9E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 56 65 7.9E-30 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 156 168 7.9E-30 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 246 256 7.9E-30 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 116 128 7.9E-30 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 178 190 7.9E-30 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 128 142 7.9E-30 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 185 200 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 Pfam PF00813 FliP family 60 252 9.2E-80 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 dqs_2861 f99c496444b49f319bfb82b4cebee13c 258 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 60 256 1.5E-88 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 dqs_0655 c8b790374b13727cc2c3366f04af55c1 275 SMART SM00363 27 90 6.6E-5 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0655 c8b790374b13727cc2c3366f04af55c1 275 PIRSF PIRSF005578 23 275 3.3E-92 T 11-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 dqs_0655 c8b790374b13727cc2c3366f04af55c1 275 Pfam PF01479 S4 domain 28 69 5.8E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0655 c8b790374b13727cc2c3366f04af55c1 275 Gene3D G3DSA:3.10.290.10 26 86 2.1E-17 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_0655 c8b790374b13727cc2c3366f04af55c1 275 SUPERFAMILY SSF55174 28 74 6.33E-9 T 11-10-2018 dqs_0655 c8b790374b13727cc2c3366f04af55c1 275 Gene3D G3DSA:3.40.50.150 87 275 4.1E-67 T 11-10-2018 dqs_0655 c8b790374b13727cc2c3366f04af55c1 275 Pfam PF01728 FtsJ-like methyltransferase 84 270 5.9E-18 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 dqs_0655 c8b790374b13727cc2c3366f04af55c1 275 SUPERFAMILY SSF53335 84 272 2.08E-21 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 195 2.2E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 1.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 1.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 1.1E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 SUPERFAMILY SSF46894 131 196 2.24E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 Gene3D G3DSA:1.10.10.10 133 197 1.6E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 Gene3D G3DSA:3.40.50.2300 1 130 5.6E-45 T 11-10-2018 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 SMART SM00421 139 196 3.5E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 Pfam PF00072 Response regulator receiver domain 8 115 6.7E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 SUPERFAMILY SSF52172 8 153 2.13E-31 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0989 2d1a672c69d3007374674ae51d5f583d 201 SMART SM00448 4 115 1.9E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 Pfam PF07729 FCD domain 99 230 8.8E-22 T 11-10-2018 IPR011711 GntR, C-terminal dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 Gene3D G3DSA:1.20.120.530 97 240 1.4E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 Gene3D G3DSA:1.10.10.10 1 74 1.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 SMART SM00345 15 74 3.8E-26 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 4.9E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 4.9E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 SUPERFAMILY SSF46785 10 77 2.94E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 SMART SM00895 99 231 3.3E-20 T 11-10-2018 IPR011711 GntR, C-terminal dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 SUPERFAMILY SSF48008 98 236 2.62E-22 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_1278 d277efa5adbb663c3cb2aae6d12bd742 260 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.6E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1894 b06f32b530903c8ec054ee82be7cae7b 423 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 17 300 9.8E-26 T 11-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 dqs_1894 b06f32b530903c8ec054ee82be7cae7b 423 SUPERFAMILY SSF55931 16 411 1.77E-40 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 dqs_1894 b06f32b530903c8ec054ee82be7cae7b 423 Gene3D G3DSA:3.30.590.20 14 413 1.4E-68 T 11-10-2018 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 Gene3D G3DSA:2.30.42.10 101 188 2.5E-91 T 11-10-2018 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 Gene3D G3DSA:3.90.226.10 189 377 2.5E-91 T 11-10-2018 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 SUPERFAMILY SSF52096 38 384 7.62E-79 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 SUPERFAMILY SSF50156 91 184 3.1E-20 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 54 384 7.4E-102 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 Pfam PF13180 PDZ domain 101 180 9.0E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 SMART SM00245 174 380 1.9E-71 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 Pfam PF03572 Peptidase family S41 200 379 3.1E-56 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 SMART SM00228 101 172 3.8E-16 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2945 719a5274bb1c2bacb8b10bd75c8bd9be 459 Gene3D G3DSA:3.30.750.44 47 355 2.5E-91 T 11-10-2018 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Gene3D G3DSA:3.30.310.50 374 450 2.7E-22 T 11-10-2018 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 SUPERFAMILY SSF53738 263 370 2.67E-31 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 377 444 1.3E-15 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 446 7.8E-184 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Gene3D G3DSA:3.40.120.10 179 365 3.2E-62 T 11-10-2018 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Gene3D G3DSA:3.40.120.10 2 160 4.0E-47 T 11-10-2018 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 101 110 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 SUPERFAMILY SSF53738 161 261 1.57E-29 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 100 114 1.4E-12 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 239 254 1.4E-12 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 179 198 1.4E-12 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 SUPERFAMILY SSF53738 2 186 1.73E-46 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 162 259 1.2E-19 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 SUPERFAMILY SSF55957 361 446 1.05E-21 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 370 2.4E-31 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 448 47.567 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 139 5.5E-41 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_1512 96ffc92eb3a39c02d0c295cd4abdb987 451 Gene3D G3DSA:3.40.120.10 262 343 3.2E-62 T 11-10-2018 dqs_1230 8546abc28b1ca9c4f8acea958ffae070 526 Gene3D G3DSA:3.50.50.60 4 92 1.7E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1230 8546abc28b1ca9c4f8acea958ffae070 526 Gene3D G3DSA:3.50.50.60 185 326 8.4E-16 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1230 8546abc28b1ca9c4f8acea958ffae070 526 Pfam PF01593 Flavin containing amine oxidoreductase 16 339 1.1E-12 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 dqs_1230 8546abc28b1ca9c4f8acea958ffae070 526 SUPERFAMILY SSF51905 1 524 2.88E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 SUPERFAMILY SSF54373 459 546 6.28E-8 T 11-10-2018 dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 Gene3D G3DSA:3.40.50.150 6 237 2.0E-97 T 11-10-2018 dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 246 629 1.9E-118 T 11-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 Gene3D G3DSA:3.30.9.10 330 547 7.0E-118 T 11-10-2018 dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 SUPERFAMILY SSF51905 245 627 2.4E-29 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 Pfam PF01266 FAD dependent oxidoreductase 246 601 4.7E-42 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 Gene3D G3DSA:3.50.50.60 244 626 7.0E-118 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 109 228 1.0E-38 T 11-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 dqs_1605 8fe899f56be594b2d22c9a778f247dd6 635 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 4 626 26.551 T 11-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 dqs_1037 12b520952c8bcefad1846b1a27868ab5 198 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 72 1.2E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_1037 12b520952c8bcefad1846b1a27868ab5 198 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 182 4.3E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal dqs_1037 12b520952c8bcefad1846b1a27868ab5 198 Gene3D G3DSA:1.20.1050.10 80 182 9.3E-75 T 11-10-2018 dqs_1037 12b520952c8bcefad1846b1a27868ab5 198 SUPERFAMILY SSF52833 1 101 5.91E-26 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1037 12b520952c8bcefad1846b1a27868ab5 198 Gene3D G3DSA:3.40.30.10 2 190 9.3E-75 T 11-10-2018 dqs_1037 12b520952c8bcefad1846b1a27868ab5 198 SUPERFAMILY SSF47616 73 197 9.24E-26 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_0662 febc6b35b46ac9cb59cb099ac30b7ac5 277 Gene3D G3DSA:3.10.310.10 117 263 3.4E-100 T 11-10-2018 dqs_0662 febc6b35b46ac9cb59cb099ac30b7ac5 277 SUPERFAMILY SSF54506 2 276 1.2E-52 T 11-10-2018 dqs_0662 febc6b35b46ac9cb59cb099ac30b7ac5 277 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 38.88 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 dqs_0662 febc6b35b46ac9cb59cb099ac30b7ac5 277 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 11-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 dqs_0662 febc6b35b46ac9cb59cb099ac30b7ac5 277 Gene3D G3DSA:3.10.310.10 5 272 3.4E-100 T 11-10-2018 dqs_0662 febc6b35b46ac9cb59cb099ac30b7ac5 277 Pfam PF01678 Diaminopimelate epimerase 5 124 6.5E-34 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 dqs_0662 febc6b35b46ac9cb59cb099ac30b7ac5 277 Pfam PF01678 Diaminopimelate epimerase 154 268 2.2E-28 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 dqs_0662 febc6b35b46ac9cb59cb099ac30b7ac5 277 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 275 6.3E-91 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 Gene3D G3DSA:3.30.540.10 1 143 1.8E-52 T 11-10-2018 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR01959 SuhB family inositol monophosphatase signature 159 185 4.6E-29 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 4.6E-29 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR01959 SuhB family inositol monophosphatase signature 107 126 4.6E-29 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR01959 SuhB family inositol monophosphatase signature 201 213 4.6E-29 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 Pfam PF00459 Inositol monophosphatase family 2 257 1.8E-71 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 SUPERFAMILY SSF56655 1 264 2.23E-89 T 11-10-2018 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 180 201 2.4E-62 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 2.4E-62 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 211 235 2.4E-62 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 84 100 2.4E-62 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 133 156 2.4E-62 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.4E-62 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 84 97 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 214 228 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 dqs_2176 21ba2a85a59fc207bde80649dad0adb3 270 Gene3D G3DSA:3.40.190.80 144 268 2.4E-38 T 11-10-2018 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 SUPERFAMILY SSF50249 37 195 1.79E-52 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 SUPERFAMILY SSF55681 467 686 3.18E-47 T 11-10-2018 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Gene3D G3DSA:3.30.56.10 404 476 3.3E-24 T 11-10-2018 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 SMART SM00896 699 792 1.7E-40 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 786 44.696 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Gene3D G3DSA:2.40.50.140 39 154 7.4E-72 T 11-10-2018 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 SMART SM00873 212 385 1.1E-91 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 792 6.5E-242 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Pfam PF01588 Putative tRNA binding domain 45 144 4.0E-25 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Gene3D G3DSA:3.30.56.10 7 180 7.4E-72 T 11-10-2018 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 SUPERFAMILY SSF46955 404 475 6.5E-18 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 SUPERFAMILY SSF56037 198 393 3.4E-71 T 11-10-2018 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Pfam PF03147 Ferredoxin-fold anticodon binding domain 699 792 3.2E-27 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Pfam PF03484 tRNA synthetase B5 domain 406 471 1.7E-16 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Gene3D G3DSA:3.30.930.10 488 688 1.5E-56 T 11-10-2018 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Gene3D G3DSA:3.30.70.380 700 792 7.1E-28 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Pfam PF03483 B3/4 domain 212 385 1.9E-68 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 SMART SM00874 403 471 1.2E-26 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 SUPERFAMILY SSF54991 695 792 1.31E-26 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 dqs_1193 7ea10d7fcf5b6778b6ec5d3ecfb026dd 796 Gene3D G3DSA:3.50.40.10 198 394 2.3E-74 T 11-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 dqs_1829 754ab193cb6a96b3e197c926eba848c6 188 TIGRFAM TIGR04335 AmmeMemoSam_A: AmmeMemoRadiSam system protein A 12 182 2.5E-58 T 11-10-2018 IPR027623 AmmeMemoRadiSam system protein A dqs_1829 754ab193cb6a96b3e197c926eba848c6 188 SUPERFAMILY SSF143447 5 184 2.62E-55 T 11-10-2018 IPR036071 AMMECR1 domain superfamily dqs_1829 754ab193cb6a96b3e197c926eba848c6 188 Pfam PF01871 AMMECR1 15 182 3.7E-47 T 11-10-2018 IPR002733 AMMECR1 domain dqs_1829 754ab193cb6a96b3e197c926eba848c6 188 Gene3D G3DSA:3.30.1490.150 110 182 2.1E-48 T 11-10-2018 dqs_1829 754ab193cb6a96b3e197c926eba848c6 188 Gene3D G3DSA:3.30.700.20 11 109 2.1E-48 T 11-10-2018 IPR027485 AMMECR1, N-terminal dqs_1829 754ab193cb6a96b3e197c926eba848c6 188 TIGRFAM TIGR00296 TIGR00296: uncharacterized protein, PH0010 family 7 183 4.8E-30 T 11-10-2018 IPR023473 AMMECR1 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 SUPERFAMILY SSF56300 108 450 2.53E-72 T 11-10-2018 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 Gene3D G3DSA:3.90.780.10 455 663 1.3E-45 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 Pfam PF02872 5'-nucleotidase, C-terminal domain 452 625 7.0E-34 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 Pfam PF00149 Calcineurin-like phosphoesterase 112 366 8.1E-11 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 SUPERFAMILY SSF55816 450 660 6.02E-42 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 Gene3D G3DSA:3.60.21.10 102 430 4.0E-68 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 PRINTS PR01607 Apyrase family signature 380 400 8.8E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 PRINTS PR01607 Apyrase family signature 519 542 8.8E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 PRINTS PR01607 Apyrase family signature 599 618 8.8E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 PRINTS PR01607 Apyrase family signature 316 333 8.8E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 PRINTS PR01607 Apyrase family signature 110 128 8.8E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_1606 040d496b85ec50f1fb4b3100b24de10d 665 PRINTS PR01607 Apyrase family signature 349 372 8.8E-26 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 dqs_0781 1081802cced7b27b135888fcd5acbed2 274 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 264 17.959 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 dqs_0781 1081802cced7b27b135888fcd5acbed2 274 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 257 6.5E-80 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 dqs_0781 1081802cced7b27b135888fcd5acbed2 274 Pfam PF02673 Bacitracin resistance protein BacA 9 259 7.3E-85 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 dqs_2740 759959c70658c1e7de089b6f40d159f1 555 Gene3D G3DSA:3.40.50.300 322 553 4.8E-47 T 11-10-2018 dqs_2740 759959c70658c1e7de089b6f40d159f1 555 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.3E-147 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 dqs_2740 759959c70658c1e7de089b6f40d159f1 555 Gene3D G3DSA:3.40.50.300 1 269 6.4E-43 T 11-10-2018 dqs_2740 759959c70658c1e7de089b6f40d159f1 555 SUPERFAMILY SSF52540 3 507 1.01E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2740 759959c70658c1e7de089b6f40d159f1 555 PIRSF PIRSF003128 1 554 1.3E-144 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 dqs_2740 759959c70658c1e7de089b6f40d159f1 555 SUPERFAMILY SSF52540 1 222 7.73E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2740 759959c70658c1e7de089b6f40d159f1 555 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 510 1.2E-17 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 SMART SM01005 229 352 1.9E-62 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 SUPERFAMILY SSF50621 223 350 4.88E-43 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 Pfam PF00842 Alanine racemase, C-terminal domain 229 346 1.2E-38 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 Pfam PF01168 Alanine racemase, N-terminal domain 8 218 2.8E-71 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 Gene3D G3DSA:3.20.20.10 10 216 1.1E-128 T 11-10-2018 IPR029066 PLP-binding barrel dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 Hamap MF_01201 Alanine racemase. 1 352 35.256 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 Gene3D G3DSA:2.40.37.10 8 347 1.1E-128 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 120 132 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 245 260 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 283 300 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 154 165 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 262 277 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 60 78 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 335 348 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 25 41 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 PRINTS PR00992 Alanine racemase signature 191 218 4.3E-65 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 SUPERFAMILY SSF51419 8 230 3.14E-71 T 11-10-2018 IPR029066 PLP-binding barrel dqs_4069 f1cdacda41a1083e91a7c5ea7b212c73 353 TIGRFAM TIGR00492 alr: alanine racemase 2 346 1.6E-108 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_0440 0a9920f6c357e49b4dbff64934830bf4 304 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 32 258 1.4E-44 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 dqs_0440 0a9920f6c357e49b4dbff64934830bf4 304 SUPERFAMILY SSF52402 9 212 8.15E-63 T 11-10-2018 dqs_0440 0a9920f6c357e49b4dbff64934830bf4 304 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 12 304 1.2E-123 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 dqs_0440 0a9920f6c357e49b4dbff64934830bf4 304 PIRSF PIRSF002936 3 304 1.8E-139 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 dqs_0440 0a9920f6c357e49b4dbff64934830bf4 304 Gene3D G3DSA:3.40.50.620 10 214 1.5E-54 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1772 93d92d9b1cb278c208c0cfe41f47ffb0 377 Gene3D G3DSA:3.20.20.300 4 331 3.3E-111 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 dqs_1772 93d92d9b1cb278c208c0cfe41f47ffb0 377 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 246 263 - T 11-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 dqs_1772 93d92d9b1cb278c208c0cfe41f47ffb0 377 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 12 353 50.818 T 11-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 dqs_1772 93d92d9b1cb278c208c0cfe41f47ffb0 377 SUPERFAMILY SSF51445 12 309 4.11E-79 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1772 93d92d9b1cb278c208c0cfe41f47ffb0 377 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 14 298 2.3E-71 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 dqs_3523 5b6dd9e163d1e8bd2a2da59672e0483f 322 SUPERFAMILY SSF53850 29 308 3.84E-29 T 11-10-2018 dqs_3523 5b6dd9e163d1e8bd2a2da59672e0483f 322 Gene3D G3DSA:3.40.190.10 61 264 3.0E-32 T 11-10-2018 dqs_3523 5b6dd9e163d1e8bd2a2da59672e0483f 322 Pfam PF13379 NMT1-like family 28 228 6.1E-13 T 11-10-2018 dqs_3523 5b6dd9e163d1e8bd2a2da59672e0483f 322 Gene3D G3DSA:3.40.190.10 106 203 3.0E-32 T 11-10-2018 dqs_3480 c4d79decf27b212dc21e9ad27d165648 131 Gene3D G3DSA:3.10.20.400 2 98 1.6E-40 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 dqs_3480 c4d79decf27b212dc21e9ad27d165648 131 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 111 33.151 T 11-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 dqs_3480 c4d79decf27b212dc21e9ad27d165648 131 SUPERFAMILY SSF141734 6 120 4.58E-50 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 dqs_3480 c4d79decf27b212dc21e9ad27d165648 131 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 107 1.6E-36 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 dqs_3480 c4d79decf27b212dc21e9ad27d165648 131 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 111 5.0E-25 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 dqs_3879 30653ac5ff162d6ff4da47c6b9277779 162 Pfam PF04355 SmpA / OmlA family 86 153 2.4E-6 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 dqs_3879 30653ac5ff162d6ff4da47c6b9277779 162 Gene3D G3DSA:3.30.1450.10 85 161 3.1E-5 T 11-10-2018 IPR037873 BamE-like dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 6.8E-49 T 11-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.5E-59 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 SUPERFAMILY SSF54686 1 134 2.09E-53 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 Gene3D G3DSA:3.90.1170.10 1 136 2.7E-55 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.652 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.4E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.4E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.4E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3549 2a4ea8b2f29a8372d54cb9364d751101 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.4E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_2631 f5198d1a9b7113c25f7bea07af3f68a8 423 ProSitePatterns PS00216 Sugar transport proteins signature 1. 77 93 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 dqs_2631 f5198d1a9b7113c25f7bea07af3f68a8 423 SUPERFAMILY SSF103473 26 411 1.09E-53 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2631 f5198d1a9b7113c25f7bea07af3f68a8 423 Gene3D G3DSA:1.20.1250.20 225 413 5.9E-27 T 11-10-2018 dqs_2631 f5198d1a9b7113c25f7bea07af3f68a8 423 Gene3D G3DSA:1.20.1250.20 15 199 9.8E-19 T 11-10-2018 dqs_2631 f5198d1a9b7113c25f7bea07af3f68a8 423 Pfam PF07690 Major Facilitator Superfamily 27 215 8.6E-18 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_2631 f5198d1a9b7113c25f7bea07af3f68a8 423 Pfam PF07690 Major Facilitator Superfamily 246 412 1.5E-19 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_0695 c7496ceded8e57ac6602a1d91f1fefea 265 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 255 4.1E-76 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 dqs_0695 c7496ceded8e57ac6602a1d91f1fefea 265 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 4 257 1.2E-76 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 dqs_0695 c7496ceded8e57ac6602a1d91f1fefea 265 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 139 151 - T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 dqs_0695 c7496ceded8e57ac6602a1d91f1fefea 265 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 262 18.863 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 dqs_0206 833e15d63b4b8604932d9412cc9d353a 303 Gene3D G3DSA:3.40.50.720 21 174 4.7E-19 T 11-10-2018 dqs_0206 833e15d63b4b8604932d9412cc9d353a 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 22 300 7.2E-53 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 dqs_0206 833e15d63b4b8604932d9412cc9d353a 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 177 297 1.0E-30 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain dqs_0206 833e15d63b4b8604932d9412cc9d353a 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 22 144 1.3E-13 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain dqs_0206 833e15d63b4b8604932d9412cc9d353a 303 SUPERFAMILY SSF51735 22 154 2.05E-9 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0206 833e15d63b4b8604932d9412cc9d353a 303 Gene3D G3DSA:1.10.1040.10 177 302 7.4E-31 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_0206 833e15d63b4b8604932d9412cc9d353a 303 SUPERFAMILY SSF48179 178 298 9.86E-30 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_1466 605fc8f7894899ad5009ecafdf8ad242 474 Pfam PF13746 4Fe-4S dicluster domain 214 319 1.8E-44 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_1466 605fc8f7894899ad5009ecafdf8ad242 474 Gene3D G3DSA:2.60.40.10 357 473 1.4E-23 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_1466 605fc8f7894899ad5009ecafdf8ad242 474 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 355 473 2.5E-31 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain dqs_1466 605fc8f7894899ad5009ecafdf8ad242 474 Pfam PF12801 4Fe-4S binding domain 90 131 2.9E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_1466 605fc8f7894899ad5009ecafdf8ad242 474 SUPERFAMILY SSF54862 100 363 1.53E-33 T 11-10-2018 dqs_1466 605fc8f7894899ad5009ecafdf8ad242 474 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 36 471 7.4E-158 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 dqs_1466 605fc8f7894899ad5009ecafdf8ad242 474 Gene3D G3DSA:3.30.70.20 212 289 2.7E-5 T 11-10-2018 dqs_1466 605fc8f7894899ad5009ecafdf8ad242 474 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 267 278 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_0481 44e1433959aeda5c7512ceccaf3d706e 266 Gene3D G3DSA:1.10.12.10 209 264 3.6E-18 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_0481 44e1433959aeda5c7512ceccaf3d706e 266 SUPERFAMILY SSF52096 2 265 1.87E-78 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0481 44e1433959aeda5c7512ceccaf3d706e 266 Gene3D G3DSA:3.90.226.10 1 206 1.5E-62 T 11-10-2018 dqs_0481 44e1433959aeda5c7512ceccaf3d706e 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 265 5.2E-53 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_2158 7a8e465dbc0c105662195ceb44650f33 1178 SUPERFAMILY SSF52540 2 1169 1.78E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2158 7a8e465dbc0c105662195ceb44650f33 1178 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1159 8.1E-64 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal dqs_2158 7a8e465dbc0c105662195ceb44650f33 1178 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1166 0.0 T 11-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 dqs_2158 7a8e465dbc0c105662195ceb44650f33 1178 Pfam PF06470 SMC proteins Flexible Hinge Domain 522 624 8.7E-7 T 11-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 dqs_2158 7a8e465dbc0c105662195ceb44650f33 1178 PIRSF PIRSF005719 1 1175 3.6E-238 T 11-10-2018 IPR024704 Structural maintenance of chromosomes protein dqs_2158 7a8e465dbc0c105662195ceb44650f33 1178 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1168 22.181 T 11-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 dqs_2158 7a8e465dbc0c105662195ceb44650f33 1178 Gene3D G3DSA:3.40.50.300 863 1175 8.7E-49 T 11-10-2018 dqs_2158 7a8e465dbc0c105662195ceb44650f33 1178 Gene3D G3DSA:3.40.50.300 1 223 1.8E-46 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 14 672 6.8E-244 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Gene3D G3DSA:2.40.50.140 325 396 4.6E-34 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SMART SM00292 603 680 5.3E-16 T 11-10-2018 IPR001357 BRCT domain dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SMART SM00278 456 475 4.9 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SMART SM00278 554 573 14.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SMART SM00278 490 509 3.8 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SMART SM00278 522 541 240.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 608 676 1.7E-15 T 11-10-2018 IPR001357 BRCT domain dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SUPERFAMILY SSF56091 5 323 3.06E-113 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 PIRSF PIRSF001604 4 682 1.1E-234 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Pfam PF12826 Helix-hairpin-helix motif 520 583 6.5E-24 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 417 444 1.1E-11 T 11-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 7 325 2.0E-114 T 11-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SMART SM00532 6 458 1.6E-241 T 11-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Hamap MF_01588 DNA ligase [ligA]. 5 677 54.739 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SUPERFAMILY SSF52113 605 685 2.76E-21 T 11-10-2018 IPR036420 BRCT domain superfamily dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Gene3D G3DSA:3.30.470.90 72 324 8.4E-91 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Gene3D G3DSA:3.40.50.10190 593 679 2.6E-29 T 11-10-2018 IPR036420 BRCT domain superfamily dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Gene3D G3DSA:1.10.287.610 5 71 9.4E-31 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SUPERFAMILY SSF50249 325 405 5.31E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Gene3D G3DSA:1.10.150.20 442 515 5.8E-31 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 329 404 1.9E-35 T 11-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Gene3D G3DSA:1.10.150.20 516 592 1.5E-30 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 123 152 - T 11-10-2018 IPR018239 NAD-dependent DNA ligase, active site dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Pfam PF14520 Helix-hairpin-helix domain 458 511 2.3E-5 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 Gene3D G3DSA:2.20.70.80 398 441 5.8E-12 T 11-10-2018 dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 338 353 - T 11-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site dqs_2156 7ce33884208d8fc48acd133a82aaa297 693 SUPERFAMILY SSF47781 417 594 1.56E-62 T 11-10-2018 IPR010994 RuvA domain 2-like dqs_3994 521778e23011c22f674c00406770bd8f 653 SMART SM00382 193 511 0.0042 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3994 521778e23011c22f674c00406770bd8f 653 SUPERFAMILY SSF52540 307 645 1.86E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3994 521778e23011c22f674c00406770bd8f 653 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 45 646 3.9E-144 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 dqs_3994 521778e23011c22f674c00406770bd8f 653 Gene3D G3DSA:3.40.50.300 137 369 1.1E-61 T 11-10-2018 dqs_3994 521778e23011c22f674c00406770bd8f 653 Pfam PF13538 UvrD-like helicase C-terminal domain 575 620 4.5E-14 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain dqs_3994 521778e23011c22f674c00406770bd8f 653 SUPERFAMILY SSF52540 125 337 8.99E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3994 521778e23011c22f674c00406770bd8f 653 Gene3D G3DSA:3.40.50.300 510 635 3.0E-23 T 11-10-2018 dqs_3994 521778e23011c22f674c00406770bd8f 653 Gene3D G3DSA:3.40.50.300 395 509 9.8E-17 T 11-10-2018 dqs_3994 521778e23011c22f674c00406770bd8f 653 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 644 47.398 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 dqs_3994 521778e23011c22f674c00406770bd8f 653 Gene3D G3DSA:1.10.10.1020 9 136 3.6E-5 T 11-10-2018 dqs_3994 521778e23011c22f674c00406770bd8f 653 Pfam PF13604 AAA domain 184 351 1.6E-29 T 11-10-2018 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 Gene3D G3DSA:3.40.430.10 140 361 2.4E-70 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 SUPERFAMILY SSF53597 149 360 5.53E-59 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 PIRSF PIRSF006769 3 362 8.4E-128 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 SUPERFAMILY SSF53927 7 148 2.17E-48 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 150 360 7.6E-59 T 11-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 11 355 4.6E-120 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 92 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 Gene3D G3DSA:3.40.140.10 2 139 1.9E-45 T 11-10-2018 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 Pfam PF01872 RibD C-terminal domain 151 355 1.2E-47 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 dqs_2942 439f8e1ee23d10f258710d32f1494cf7 363 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 103 2.4E-19 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain dqs_3738 475f10677f1ea7b32bf623bc650f34f2 829 Gene3D G3DSA:1.25.40.10 476 676 8.1E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3738 475f10677f1ea7b32bf623bc650f34f2 829 SUPERFAMILY SSF53335 3 174 1.22E-22 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3738 475f10677f1ea7b32bf623bc650f34f2 829 SUPERFAMILY SSF53335 228 378 2.41E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3738 475f10677f1ea7b32bf623bc650f34f2 829 Gene3D G3DSA:3.40.50.150 229 390 2.6E-32 T 11-10-2018 dqs_3738 475f10677f1ea7b32bf623bc650f34f2 829 Gene3D G3DSA:3.40.50.150 2 172 9.2E-26 T 11-10-2018 dqs_3738 475f10677f1ea7b32bf623bc650f34f2 829 Pfam PF08241 Methyltransferase domain 243 341 4.9E-18 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_3738 475f10677f1ea7b32bf623bc650f34f2 829 Pfam PF08241 Methyltransferase domain 41 127 1.2E-16 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_0507 989c9ce2a2da53b03ee92b7dd87c95f3 197 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 17 190 1.6E-18 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase dqs_0507 989c9ce2a2da53b03ee92b7dd87c95f3 197 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 17 190 1.7E-34 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase dqs_0507 989c9ce2a2da53b03ee92b7dd87c95f3 197 PIRSF PIRSF006806 11 193 8.2E-22 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase dqs_0507 989c9ce2a2da53b03ee92b7dd87c95f3 197 SUPERFAMILY SSF100950 16 194 1.67E-40 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_0507 989c9ce2a2da53b03ee92b7dd87c95f3 197 Gene3D G3DSA:3.40.50.10420 13 197 2.5E-37 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 SUPERFAMILY SSF55874 483 642 1.57E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 PRINTS PR00344 Bacterial sensor protein C-terminal signature 593 603 2.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 PRINTS PR00344 Bacterial sensor protein C-terminal signature 630 643 2.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 624 2.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 PRINTS PR00344 Bacterial sensor protein C-terminal signature 575 589 2.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 Gene3D G3DSA:3.30.450.20 81 202 1.8E-65 T 11-10-2018 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 SUPERFAMILY SSF47384 422 490 7.65E-8 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 SMART SM00387 535 646 1.4E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 PIRSF PIRSF036431 18 653 5.1E-189 T 11-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 Gene3D G3DSA:1.10.287.130 401 488 1.2E-14 T 11-10-2018 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 Gene3D G3DSA:3.30.450.20 69 320 1.8E-65 T 11-10-2018 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 Gene3D G3DSA:3.30.565.10 495 647 2.1E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 SMART SM00388 425 493 0.0023 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 SUPERFAMILY SSF103190 79 212 1.39E-19 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 Pfam PF02743 Cache domain 71 237 9.3E-12 T 11-10-2018 IPR033479 Double Cache domain 1 dqs_0459 1d59e8ec01deade136751b1e5ec52eb7 653 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 536 643 6.3E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PIRSF PIRSF000361 108 416 3.7E-75 T 11-10-2018 IPR015701 Ferredoxin--NADP reductase GO:0016491|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 Gene3D G3DSA:3.30.70.20 15 95 3.2E-12 T 11-10-2018 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 SUPERFAMILY SSF63380 132 269 6.07E-39 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 Pfam PF00037 4Fe-4S binding domain 16 37 9.6E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 Pfam PF00037 4Fe-4S binding domain 44 66 1.1E-4 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 Pfam PF00175 Oxidoreductase NAD-binding domain 277 383 1.4E-13 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 50 61 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 SUPERFAMILY SSF54862 14 76 4.44E-18 T 11-10-2018 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PIRSF PIRSF501177 1 416 2.1E-217 T 11-10-2018 IPR017634 Benzoyl-CoA oxygenase/reductase, BoxA protein KEGG: 00362+1.14.13.208|MetaCyc: PWY-1361 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 TIGRFAM TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein 10 416 3.5E-229 T 11-10-2018 IPR017634 Benzoyl-CoA oxygenase/reductase, BoxA protein KEGG: 00362+1.14.13.208|MetaCyc: PWY-1361 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 211 9.3E-19 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 240 249 9.3E-19 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 181 191 9.3E-19 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 304 313 9.3E-19 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 346 362 9.3E-19 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 370 378 9.3E-19 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 276 295 9.3E-19 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 Gene3D G3DSA:3.40.50.80 262 416 2.2E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 21 32 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 Gene3D G3DSA:2.40.30.10 126 261 3.2E-41 T 11-10-2018 dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 SUPERFAMILY SSF52343 265 416 7.46E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_3192 bb6fb42e1f9d578a7eb3ddbe99dcd4b8 416 Pfam PF00970 Oxidoreductase FAD-binding domain 201 264 2.6E-4 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_1260 22098752ccab8a89a68271b450299fb7 681 SUPERFAMILY SSF54980 585 674 1.49E-16 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_1260 22098752ccab8a89a68271b450299fb7 681 Gene3D G3DSA:3.40.50.300 10 365 1.7E-69 T 11-10-2018 dqs_1260 22098752ccab8a89a68271b450299fb7 681 Pfam PF00009 Elongation factor Tu GTP binding domain 8 259 1.3E-27 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_1260 22098752ccab8a89a68271b450299fb7 681 Pfam PF14492 Elongation Factor G, domain II 387 453 1.6E-17 T 11-10-2018 dqs_1260 22098752ccab8a89a68271b450299fb7 681 Gene3D G3DSA:3.30.70.240 586 657 1.3E-66 T 11-10-2018 dqs_1260 22098752ccab8a89a68271b450299fb7 681 Pfam PF03764 Elongation factor G, domain IV 461 579 9.4E-40 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 dqs_1260 22098752ccab8a89a68271b450299fb7 681 SMART SM00889 462 580 2.7E-57 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 dqs_1260 22098752ccab8a89a68271b450299fb7 681 SUPERFAMILY SSF54980 386 463 3.06E-14 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_1260 22098752ccab8a89a68271b450299fb7 681 SUPERFAMILY SSF50447 243 380 1.3E-20 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_1260 22098752ccab8a89a68271b450299fb7 681 SMART SM00838 582 670 3.0E-10 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like dqs_1260 22098752ccab8a89a68271b450299fb7 681 Gene3D G3DSA:3.30.230.10 466 669 1.3E-66 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_1260 22098752ccab8a89a68271b450299fb7 681 Gene3D G3DSA:3.40.50.300 17 257 1.7E-69 T 11-10-2018 dqs_1260 22098752ccab8a89a68271b450299fb7 681 SUPERFAMILY SSF52540 6 259 5.51E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1260 22098752ccab8a89a68271b450299fb7 681 SUPERFAMILY SSF54211 461 581 7.59E-39 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_1260 22098752ccab8a89a68271b450299fb7 681 Pfam PF00679 Elongation factor G C-terminus 583 669 1.0E-18 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like dqs_1260 22098752ccab8a89a68271b450299fb7 681 Gene3D G3DSA:3.30.70.870 387 461 1.7E-18 T 11-10-2018 dqs_1900 ef619e2683b3bd3fe9183d8476111a16 53 PIRSF PIRSF036466 1 53 2.5E-22 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 dqs_1900 ef619e2683b3bd3fe9183d8476111a16 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 51 20.669 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 dqs_1900 ef619e2683b3bd3fe9183d8476111a16 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 2.7E-16 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 dqs_0483 2ba3d84fcfebe8fe2937308d69b02dc6 429 Gene3D G3DSA:3.40.640.10 8 288 1.9E-103 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_0483 2ba3d84fcfebe8fe2937308d69b02dc6 429 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 424 2.9E-196 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 dqs_0483 2ba3d84fcfebe8fe2937308d69b02dc6 429 SUPERFAMILY SSF53383 7 424 6.6E-130 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_0483 2ba3d84fcfebe8fe2937308d69b02dc6 429 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 423 7.8E-141 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_0483 2ba3d84fcfebe8fe2937308d69b02dc6 429 PIRSF PIRSF001434 1 426 1.7E-128 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_0483 2ba3d84fcfebe8fe2937308d69b02dc6 429 Gene3D G3DSA:3.90.1150.10 292 429 6.0E-53 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_0483 2ba3d84fcfebe8fe2937308d69b02dc6 429 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 201 215 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_2830 6885a0460094727794f232299de3e2f7 404 Gene3D G3DSA:3.40.50.20 30 79 1.1E-19 T 11-10-2018 dqs_2830 6885a0460094727794f232299de3e2f7 404 SUPERFAMILY SSF56059 90 275 1.45E-21 T 11-10-2018 dqs_2830 6885a0460094727794f232299de3e2f7 404 Gene3D G3DSA:3.30.470.20 160 257 1.1E-19 T 11-10-2018 dqs_2830 6885a0460094727794f232299de3e2f7 404 SUPERFAMILY SSF56784 294 387 2.84E-5 T 11-10-2018 IPR036412 HAD-like superfamily dqs_2830 6885a0460094727794f232299de3e2f7 404 Gene3D G3DSA:3.30.1490.20 80 159 1.1E-19 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_1988 9d25f709188a03ac7cee5b6c22d20236 371 Pfam PF14870 Photosynthesis system II assembly factor YCF48 91 135 3.6E-6 T 11-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain dqs_1988 9d25f709188a03ac7cee5b6c22d20236 371 Pfam PF14870 Photosynthesis system II assembly factor YCF48 169 249 6.4E-10 T 11-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain dqs_1988 9d25f709188a03ac7cee5b6c22d20236 371 Gene3D G3DSA:2.130.10.10 178 354 2.5E-12 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_1988 9d25f709188a03ac7cee5b6c22d20236 371 Gene3D G3DSA:2.130.10.10 42 160 8.9E-10 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_1988 9d25f709188a03ac7cee5b6c22d20236 371 SUPERFAMILY SSF110296 54 331 6.41E-42 T 11-10-2018 dqs_2764 1c8b2e7a625e4da6920880156312705e 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.2E-31 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_2764 1c8b2e7a625e4da6920880156312705e 67 Gene3D G3DSA:2.40.50.140 1 65 1.0E-30 T 11-10-2018 dqs_2764 1c8b2e7a625e4da6920880156312705e 67 PRINTS PR00050 Cold shock protein signature 25 34 4.5E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_2764 1c8b2e7a625e4da6920880156312705e 67 PRINTS PR00050 Cold shock protein signature 4 19 4.5E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_2764 1c8b2e7a625e4da6920880156312705e 67 PRINTS PR00050 Cold shock protein signature 40 58 4.5E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_2764 1c8b2e7a625e4da6920880156312705e 67 SUPERFAMILY SSF50249 1 66 2.57E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_2764 1c8b2e7a625e4da6920880156312705e 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site dqs_2764 1c8b2e7a625e4da6920880156312705e 67 SMART SM00357 3 67 4.5E-32 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 dqs_2764 1c8b2e7a625e4da6920880156312705e 67 PIRSF PIRSF002599 1 67 1.2E-24 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 dqs_4122 b0be6224bdfc54c3d5ad692237175d1b 358 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 346 8.2E-127 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 dqs_4122 b0be6224bdfc54c3d5ad692237175d1b 358 Gene3D G3DSA:3.20.20.210 1 358 1.3E-156 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 dqs_4122 b0be6224bdfc54c3d5ad692237175d1b 358 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 1.3E-135 T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 dqs_4122 b0be6224bdfc54c3d5ad692237175d1b 358 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 dqs_4122 b0be6224bdfc54c3d5ad692237175d1b 358 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.08 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 dqs_4122 b0be6224bdfc54c3d5ad692237175d1b 358 SUPERFAMILY SSF51726 4 352 5.06E-119 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 dqs_4122 b0be6224bdfc54c3d5ad692237175d1b 358 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 397 9.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 9.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 411 9.2E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 SMART SM00304 183 236 2.6E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 Gene3D G3DSA:1.10.287.130 187 303 1.9E-16 T 11-10-2018 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 SMART SM00387 347 456 1.3E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 449 3.2E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 Gene3D G3DSA:3.30.565.10 308 453 3.1E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 SUPERFAMILY SSF158472 185 235 1.44E-5 T 11-10-2018 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 SMART SM00388 237 303 9.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 Pfam PF00672 HAMP domain 185 233 2.8E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 SUPERFAMILY SSF47384 220 303 7.85E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0469 a8bfc2396985d05243a07d7c5692ce3f 462 SUPERFAMILY SSF55874 294 452 7.33E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1209 87c6420adfa980ce358eec63387c0e20 371 SMART SM00558 95 221 1.4E-5 T 11-10-2018 IPR003347 JmjC domain dqs_1209 87c6420adfa980ce358eec63387c0e20 371 SUPERFAMILY SSF51197 4 290 2.2E-72 T 11-10-2018 dqs_1209 87c6420adfa980ce358eec63387c0e20 371 Gene3D G3DSA:2.60.120.650 1 206 1.6E-76 T 11-10-2018 dqs_1209 87c6420adfa980ce358eec63387c0e20 371 Pfam PF08007 Cupin superfamily protein 11 308 1.2E-86 T 11-10-2018 IPR003347 JmjC domain dqs_1209 87c6420adfa980ce358eec63387c0e20 371 Gene3D G3DSA:1.10.10.2510 207 365 8.7E-23 T 11-10-2018 dqs_3592 b04fd41265da41ffa292bfe242487ea3 424 Gene3D G3DSA:3.90.1150.10 8 418 1.8E-176 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3592 b04fd41265da41ffa292bfe242487ea3 424 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 5 422 2.5E-184 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 dqs_3592 b04fd41265da41ffa292bfe242487ea3 424 SUPERFAMILY SSF53383 3 423 1.85E-131 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_3592 b04fd41265da41ffa292bfe242487ea3 424 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 4 423 104.238 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 dqs_3592 b04fd41265da41ffa292bfe242487ea3 424 Gene3D G3DSA:3.40.640.10 70 318 1.8E-176 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_3592 b04fd41265da41ffa292bfe242487ea3 424 Pfam PF00202 Aminotransferase class-III 33 390 6.1E-72 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_3592 b04fd41265da41ffa292bfe242487ea3 424 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 271 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 Pfam PF07478 D-ala D-ala ligase C-terminus 108 297 4.6E-49 T 11-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 Gene3D G3DSA:3.30.470.20 88 297 7.1E-68 T 11-10-2018 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 244 272 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 Pfam PF01820 D-ala D-ala ligase N-terminus 7 89 3.8E-19 T 11-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 SUPERFAMILY SSF52440 7 99 1.63E-31 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_0957 658b466583cba95bdfba90cdab80ef51 304 SUPERFAMILY SSF56059 100 300 2.69E-56 T 11-10-2018 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 Gene3D G3DSA:3.40.50.20 1 87 7.6E-32 T 11-10-2018 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 7 301 9.1E-97 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 Gene3D G3DSA:3.30.1490.20 114 179 7.1E-68 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 PIRSF PIRSF039102 4 49 8.7E-8 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 PIRSF PIRSF039102 44 303 1.2E-76 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 6 302 33.303 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0957 658b466583cba95bdfba90cdab80ef51 304 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 66 77 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_2287 dccc3cc463bb2b28a92db8afd77ffd58 156 SUPERFAMILY SSF52833 33 151 1.69E-11 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2287 dccc3cc463bb2b28a92db8afd77ffd58 156 Gene3D G3DSA:3.40.30.10 18 153 1.3E-8 T 11-10-2018 dqs_3739 26a2937c9789bbb5c6dfc987623d460f 467 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3739 26a2937c9789bbb5c6dfc987623d460f 467 Pfam PF14524 Wzt C-terminal domain 300 453 8.3E-19 T 11-10-2018 IPR029439 Wzt, C-terminal dqs_3739 26a2937c9789bbb5c6dfc987623d460f 467 Pfam PF00005 ABC transporter 53 185 2.9E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3739 26a2937c9789bbb5c6dfc987623d460f 467 SUPERFAMILY SSF52540 46 244 3.11E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3739 26a2937c9789bbb5c6dfc987623d460f 467 SMART SM00382 62 252 4.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 Pfam PF02954 Bacterial regulatory protein, Fis family 624 665 5.8E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 Gene3D G3DSA:3.40.50.300 345 528 1.2E-57 T 11-10-2018 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 Gene3D G3DSA:1.10.10.60 619 667 1.0E-14 T 11-10-2018 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 SMART SM00382 378 521 4.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 382 395 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 SUPERFAMILY SSF46689 571 667 6.66E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 Gene3D G3DSA:3.30.450.40 50 235 8.3E-55 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 Gene3D G3DSA:1.10.8.60 529 608 2.4E-24 T 11-10-2018 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 Pfam PF00158 Sigma-54 interaction domain 358 524 2.4E-58 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 571 580 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 631 648 3.7E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 648 668 3.7E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 Pfam PF01590 GAF domain 136 234 1.1E-8 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1340 a0a7879416a96f0cfd42bd56326ed359 686 SUPERFAMILY SSF52540 357 601 3.73E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 Pfam PF03466 LysR substrate binding domain 93 311 1.9E-28 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 Gene3D G3DSA:3.40.190.10 176 280 2.0E-56 T 11-10-2018 dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 SUPERFAMILY SSF46785 4 87 3.58E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 Gene3D G3DSA:1.10.10.10 7 94 2.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 SUPERFAMILY SSF53850 95 313 1.18E-33 T 11-10-2018 dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 9.8E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 Gene3D G3DSA:3.40.190.10 105 307 2.0E-56 T 11-10-2018 dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3761 ec9810d42b7a1365cf00d195a2172c0a 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Hamap MF_00204 UvrABC system protein B [uvrB]. 21 681 43.364 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Gene3D G3DSA:3.40.50.300 432 613 8.9E-50 T 11-10-2018 dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Pfam PF12344 Ultra-violet resistance protein B 569 611 5.5E-21 T 11-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 SUPERFAMILY SSF46600 635 681 3.79E-11 T 11-10-2018 IPR036876 UVR domain superfamily dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 SUPERFAMILY SSF52540 22 432 7.24E-133 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Gene3D G3DSA:3.40.50.300 14 258 2.5E-71 T 11-10-2018 dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 SUPERFAMILY SSF52540 55 599 1.25E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Pfam PF04851 Type III restriction enzyme, res subunit 35 156 6.2E-9 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Pfam PF02151 UvrB/uvrC motif 648 680 1.3E-7 T 11-10-2018 IPR001943 UVR domain GO:0005515 dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Pfam PF00271 Helicase conserved C-terminal domain 453 561 1.5E-18 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Gene3D G3DSA:3.40.50.300 286 431 2.2E-51 T 11-10-2018 dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 23 679 0.0 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 SMART SM00490 477 563 8.3E-20 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 SMART SM00487 27 443 1.6E-26 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_1736 8467a1e1bce39d6f4a11a691a00f17f1 691 Gene3D G3DSA:4.10.860.10 631 686 1.6E-17 T 11-10-2018 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 Pfam PF00682 HMGL-like 41 319 4.2E-75 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 5 555 4.0E-229 T 11-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 Gene3D G3DSA:3.30.160.270 383 553 1.1E-49 T 11-10-2018 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 SUPERFAMILY SSF110921 451 554 2.22E-27 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 SUPERFAMILY SSF89000 394 443 1.33E-14 T 11-10-2018 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 249 262 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 46 62 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 SMART SM00917 428 555 8.5E-24 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 6 556 53.437 T 11-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 SUPERFAMILY SSF51569 28 336 7.91E-103 T 11-10-2018 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 Pfam PF08502 LeuA allosteric (dimerisation) domain 428 554 2.6E-20 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3666 0379f6cb4a6786c85ea353efc9dc27d0 572 Gene3D G3DSA:3.20.20.70 22 382 8.1E-158 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 57 1.3E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 Gene3D G3DSA:1.10.10.10 1 85 7.0E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 Pfam PF03466 LysR substrate binding domain 83 288 1.0E-41 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 SUPERFAMILY SSF46785 1 79 5.05E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 6.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 13 24 6.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 34 6.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 SUPERFAMILY SSF53850 85 289 3.14E-39 T 11-10-2018 dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 Gene3D G3DSA:3.40.190.10 86 283 1.0E-56 T 11-10-2018 dqs_1666 dcc9babc25c1f5f1d8dffd9eeaaf280d 295 Gene3D G3DSA:3.40.190.10 160 265 1.0E-56 T 11-10-2018 dqs_2503 ed5ad39cba2325515c64bd655fcb2068 150 Pfam PF00581 Rhodanese-like domain 29 126 5.2E-7 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2503 ed5ad39cba2325515c64bd655fcb2068 150 SUPERFAMILY SSF52821 23 149 1.44E-16 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2503 ed5ad39cba2325515c64bd655fcb2068 150 Gene3D G3DSA:3.40.250.10 21 150 9.5E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2503 ed5ad39cba2325515c64bd655fcb2068 150 SMART SM00450 28 134 9.4E-5 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_1343 49abe64701fa0a5e3cb46808dea90285 521 Gene3D G3DSA:3.50.50.60 203 335 1.9E-9 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1343 49abe64701fa0a5e3cb46808dea90285 521 Gene3D G3DSA:3.50.50.60 428 520 1.1E-12 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1343 49abe64701fa0a5e3cb46808dea90285 521 SUPERFAMILY SSF51905 12 516 1.48E-61 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1343 49abe64701fa0a5e3cb46808dea90285 521 Pfam PF00732 GMC oxidoreductase 13 302 2.3E-21 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 dqs_1343 49abe64701fa0a5e3cb46808dea90285 521 SUPERFAMILY SSF54373 289 457 3.92E-14 T 11-10-2018 dqs_1343 49abe64701fa0a5e3cb46808dea90285 521 Pfam PF05199 GMC oxidoreductase 389 507 1.8E-21 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 dqs_1343 49abe64701fa0a5e3cb46808dea90285 521 Gene3D G3DSA:3.50.50.60 11 168 6.0E-17 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3377 cd05d3ad4ba0197e3d8d4ae746cb1bc7 550 SUPERFAMILY SSF52172 5 139 6.4E-24 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3377 cd05d3ad4ba0197e3d8d4ae746cb1bc7 550 Gene3D G3DSA:3.40.50.2300 3 133 9.0E-21 T 11-10-2018 dqs_3377 cd05d3ad4ba0197e3d8d4ae746cb1bc7 550 SMART SM00448 7 123 9.6E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3377 cd05d3ad4ba0197e3d8d4ae746cb1bc7 550 SUPERFAMILY SSF48452 139 292 1.34E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3377 cd05d3ad4ba0197e3d8d4ae746cb1bc7 550 Pfam PF00072 Response regulator receiver domain 9 122 3.9E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3377 cd05d3ad4ba0197e3d8d4ae746cb1bc7 550 Gene3D G3DSA:1.25.40.10 136 388 4.6E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3377 cd05d3ad4ba0197e3d8d4ae746cb1bc7 550 Pfam PF13432 Tetratricopeptide repeat 170 224 1.2E-5 T 11-10-2018 dqs_0893 fcbebe2bf74f53f7a4568ec48865d11f 280 SUPERFAMILY SSF56601 24 263 2.28E-56 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_0893 fcbebe2bf74f53f7a4568ec48865d11f 280 Gene3D G3DSA:3.40.710.10 6 278 3.6E-62 T 11-10-2018 dqs_0893 fcbebe2bf74f53f7a4568ec48865d11f 280 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 131 144 3.1E-13 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 dqs_0893 fcbebe2bf74f53f7a4568ec48865d11f 280 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 104 121 3.1E-13 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 dqs_0893 fcbebe2bf74f53f7a4568ec48865d11f 280 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 54 65 3.1E-13 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 dqs_0893 fcbebe2bf74f53f7a4568ec48865d11f 280 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 23 246 1.7E-55 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 dqs_0127 7a7cdbcfc84a1db17a2504df3d20b9f8 255 Gene3D G3DSA:3.40.50.300 2 247 2.5E-57 T 11-10-2018 dqs_0127 7a7cdbcfc84a1db17a2504df3d20b9f8 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 246 3.1E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_0127 7a7cdbcfc84a1db17a2504df3d20b9f8 255 SMART SM00382 30 232 4.9E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0127 7a7cdbcfc84a1db17a2504df3d20b9f8 255 Pfam PF00005 ABC transporter 22 177 1.3E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0127 7a7cdbcfc84a1db17a2504df3d20b9f8 255 SUPERFAMILY SSF52540 4 246 9.63E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 Gene3D G3DSA:3.20.20.70 454 797 1.3E-120 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 SUPERFAMILY SSF56235 19 444 6.18E-155 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 Gene3D G3DSA:2.160.20.60 1257 1556 2.8E-110 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 Pfam PF00310 Glutamine amidotransferases class-II 19 442 7.4E-188 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 Gene3D G3DSA:3.20.20.70 798 1253 7.3E-207 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 SUPERFAMILY SSF69336 1254 1545 4.84E-93 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 Pfam PF01645 Conserved region in glutamate synthase 815 1205 1.6E-156 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 Gene3D G3DSA:3.60.20.10 19 453 1.7E-184 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 SUPERFAMILY SSF51395 466 1241 1.38E-263 T 11-10-2018 dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 Pfam PF04898 Glutamate synthase central domain 471 754 3.6E-110 T 11-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 dqs_3787 0f7002e44777cf252518ed7b2df93dde 1557 Pfam PF01493 GXGXG motif 1285 1470 6.0E-80 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 dqs_3914 7b7afe1fd3cc63f0e0bf94fbcb1070db 481 Pfam PF13281 Domain of unknown function (DUF4071) 271 363 1.2E-7 T 11-10-2018 IPR025136 Domain of unknown function DUF4071 dqs_3914 7b7afe1fd3cc63f0e0bf94fbcb1070db 481 Gene3D G3DSA:1.25.40.10 232 437 1.6E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1863 c8efb136793ec82671ae42289d4b3c05 272 SMART SM00986 114 261 4.4E-44 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_1863 c8efb136793ec82671ae42289d4b3c05 272 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 100 266 1.5E-63 T 11-10-2018 IPR005273 Uracil-DNA glycosylase family 4 dqs_1863 c8efb136793ec82671ae42289d4b3c05 272 Pfam PF03167 Uracil DNA glycosylase superfamily 114 260 3.5E-47 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_1863 c8efb136793ec82671ae42289d4b3c05 272 SUPERFAMILY SSF52141 90 269 1.31E-64 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_1863 c8efb136793ec82671ae42289d4b3c05 272 Gene3D G3DSA:3.40.470.10 89 271 2.5E-73 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_1863 c8efb136793ec82671ae42289d4b3c05 272 SMART SM00987 114 261 4.4E-44 T 11-10-2018 dqs_4106 f4304e7475a00149f39ff22afa80112e 239 SUPERFAMILY SSF55666 151 236 4.45E-27 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_4106 f4304e7475a00149f39ff22afa80112e 239 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 4.4E-23 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_4106 f4304e7475a00149f39ff22afa80112e 239 SUPERFAMILY SSF54211 1 181 4.25E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_4106 f4304e7475a00149f39ff22afa80112e 239 Pfam PF03725 3' exoribonuclease family, domain 2 158 223 1.0E-11 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_4106 f4304e7475a00149f39ff22afa80112e 239 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 1.0E-117 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 dqs_4106 f4304e7475a00149f39ff22afa80112e 239 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 11-10-2018 IPR018336 Ribonuclease PH, conserved site dqs_4106 f4304e7475a00149f39ff22afa80112e 239 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 45.77 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 dqs_4106 f4304e7475a00149f39ff22afa80112e 239 Gene3D G3DSA:3.30.230.70 9 237 4.2E-63 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_1035 02f906d403ffe527a3654a270e2ea72a 422 Gene3D G3DSA:1.20.810.10 1 422 1.1E-158 T 11-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 dqs_1035 02f906d403ffe527a3654a270e2ea72a 422 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 288 397 6.3E-43 T 11-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 dqs_1035 02f906d403ffe527a3654a270e2ea72a 422 Pfam PF00033 Cytochrome b/b6/petB 27 222 2.9E-64 T 11-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 dqs_1035 02f906d403ffe527a3654a270e2ea72a 422 SUPERFAMILY SSF81648 291 410 2.62E-30 T 11-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 dqs_1035 02f906d403ffe527a3654a270e2ea72a 422 PIRSF PIRSF038885 1 422 3.4E-155 T 11-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 dqs_1035 02f906d403ffe527a3654a270e2ea72a 422 SUPERFAMILY SSF81342 11 290 3.45E-97 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 dqs_4086 c54acd13f8926f9cfdf81832e24144e0 84 Hamap MF_02200 Chaperone NapD [napD]. 1 78 15.474 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly dqs_4086 c54acd13f8926f9cfdf81832e24144e0 84 Gene3D G3DSA:3.30.70.920 1 71 1.8E-14 T 11-10-2018 dqs_4086 c54acd13f8926f9cfdf81832e24144e0 84 Pfam PF03927 NapD protein 1 77 1.8E-22 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly dqs_3123 2118e06a47dd9dc50d5699bbfce7bb7b 181 Gene3D G3DSA:3.40.430.10 6 179 1.3E-43 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 dqs_3123 2118e06a47dd9dc50d5699bbfce7bb7b 181 Pfam PF01872 RibD C-terminal domain 7 168 2.6E-14 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 dqs_3123 2118e06a47dd9dc50d5699bbfce7bb7b 181 SUPERFAMILY SSF53597 4 180 6.15E-36 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 dqs_3032 4f149fb8f268010f087e590cc722ebde 347 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 322 49.05 T 11-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 dqs_3032 4f149fb8f268010f087e590cc722ebde 347 Pfam PF01207 Dihydrouridine synthase (Dus) 14 315 4.0E-106 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 dqs_3032 4f149fb8f268010f087e590cc722ebde 347 PIRSF PIRSF006621 2 328 6.8E-104 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 dqs_3032 4f149fb8f268010f087e590cc722ebde 347 Gene3D G3DSA:1.10.1200.80 253 330 9.2E-13 T 11-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 dqs_3032 4f149fb8f268010f087e590cc722ebde 347 Gene3D G3DSA:3.20.20.70 6 249 4.1E-78 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3032 4f149fb8f268010f087e590cc722ebde 347 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 dqs_3032 4f149fb8f268010f087e590cc722ebde 347 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 6 320 1.9E-120 T 11-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 dqs_3032 4f149fb8f268010f087e590cc722ebde 347 SUPERFAMILY SSF51395 10 319 3.48E-90 T 11-10-2018 dqs_2985 46074770c5efb00f862bc43423b31c23 629 Pfam PF02954 Bacterial regulatory protein, Fis family 586 625 1.0E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2985 46074770c5efb00f862bc43423b31c23 629 Pfam PF00158 Sigma-54 interaction domain 332 493 1.8E-62 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_2985 46074770c5efb00f862bc43423b31c23 629 Gene3D G3DSA:3.40.50.300 318 499 1.3E-59 T 11-10-2018 dqs_2985 46074770c5efb00f862bc43423b31c23 629 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 351 364 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_2985 46074770c5efb00f862bc43423b31c23 629 SUPERFAMILY SSF55781 69 208 8.83E-6 T 11-10-2018 dqs_2985 46074770c5efb00f862bc43423b31c23 629 Gene3D G3DSA:1.10.8.60 500 572 1.0E-13 T 11-10-2018 dqs_2985 46074770c5efb00f862bc43423b31c23 629 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 591 608 9.1E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2985 46074770c5efb00f862bc43423b31c23 629 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 608 628 9.1E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2985 46074770c5efb00f862bc43423b31c23 629 Gene3D G3DSA:3.30.450.40 24 209 5.3E-36 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_2985 46074770c5efb00f862bc43423b31c23 629 SUPERFAMILY SSF52540 335 566 1.16E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2985 46074770c5efb00f862bc43423b31c23 629 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 414 429 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_2985 46074770c5efb00f862bc43423b31c23 629 SUPERFAMILY SSF46689 537 626 1.25E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2985 46074770c5efb00f862bc43423b31c23 629 Gene3D G3DSA:1.10.10.60 573 626 8.3E-14 T 11-10-2018 dqs_2985 46074770c5efb00f862bc43423b31c23 629 SMART SM00382 347 491 1.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0602 0991e70ebb4e6707404b905670ee78e7 171 SUPERFAMILY SSF55846 5 155 4.97E-26 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_0602 0991e70ebb4e6707404b905670ee78e7 171 SMART SM00644 2 148 6.6E-4 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_0602 0991e70ebb4e6707404b905670ee78e7 171 Gene3D G3DSA:3.40.80.10 3 160 1.8E-31 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_0602 0991e70ebb4e6707404b905670ee78e7 171 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 5 148 2.1E-18 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_1983 847727a941a471093d63e097d28d136c 229 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 54 195 2.0E-13 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 dqs_1983 847727a941a471093d63e097d28d136c 229 SUPERFAMILY SSF48150 45 212 3.31E-40 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 dqs_1983 847727a941a471093d63e097d28d136c 229 Gene3D G3DSA:1.10.1670.40 21 211 3.9E-66 T 11-10-2018 dqs_1983 847727a941a471093d63e097d28d136c 229 SMART SM00478 58 214 1.7E-14 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 dqs_1983 847727a941a471093d63e097d28d136c 229 Gene3D G3DSA:1.10.340.30 46 161 3.9E-66 T 11-10-2018 dqs_1712 95630ed0b451c59af23ad4b190226a70 159 Pfam PF03734 L,D-transpeptidase catalytic domain 3 157 1.7E-18 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 dqs_1712 95630ed0b451c59af23ad4b190226a70 159 Gene3D G3DSA:2.40.440.10 1 159 1.1E-29 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like dqs_1712 95630ed0b451c59af23ad4b190226a70 159 SUPERFAMILY SSF141523 2 157 3.66E-24 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 SUPERFAMILY SSF69189 268 360 2.94E-24 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 SUPERFAMILY SSF56601 3 268 5.52E-83 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 Gene3D G3DSA:3.40.710.10 17 267 1.2E-86 T 11-10-2018 dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 Gene3D G3DSA:2.60.410.10 268 357 3.2E-29 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 SMART SM00936 268 358 2.4E-33 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 268 357 1.4E-21 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 54 65 6.6E-18 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 134 147 6.6E-18 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 107 124 6.6E-18 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 dqs_0189 e32ed6b7ef2ba7b6e09b9f0a83d72e50 376 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 23 248 5.2E-80 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 dqs_2047 5910bf7d588053ef495eaf246084dadd 228 Gene3D G3DSA:3.40.50.300 8 225 4.5E-69 T 11-10-2018 dqs_2047 5910bf7d588053ef495eaf246084dadd 228 PIRSF PIRSF006755 6 224 1.7E-68 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 dqs_2047 5910bf7d588053ef495eaf246084dadd 228 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 11 181 1.3E-48 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 dqs_2047 5910bf7d588053ef495eaf246084dadd 228 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 7 221 29.508 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 dqs_2047 5910bf7d588053ef495eaf246084dadd 228 Pfam PF13500 AAA domain 10 216 5.4E-40 T 11-10-2018 dqs_2047 5910bf7d588053ef495eaf246084dadd 228 SUPERFAMILY SSF52540 9 225 2.46E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3554 f92f097ef7c8cef38e4c2560dbcfb5b6 101 Gene3D G3DSA:3.30.70.330 3 101 3.7E-34 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily dqs_3554 f92f097ef7c8cef38e4c2560dbcfb5b6 101 Pfam PF00276 Ribosomal protein L23 11 97 4.1E-29 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 dqs_3554 f92f097ef7c8cef38e4c2560dbcfb5b6 101 SUPERFAMILY SSF54189 5 95 3.96E-29 T 11-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3554 f92f097ef7c8cef38e4c2560dbcfb5b6 101 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 10 100 22.21 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 dqs_1967 b40721ec8e30803d0f7c131812d8d480 306 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 40 291 1.3E-21 T 11-10-2018 IPR017039 Virulence factor BrkB dqs_1967 b40721ec8e30803d0f7c131812d8d480 306 Pfam PF03631 Virulence factor BrkB 40 292 2.2E-45 T 11-10-2018 IPR017039 Virulence factor BrkB dqs_1967 b40721ec8e30803d0f7c131812d8d480 306 PIRSF PIRSF035875 15 297 3.5E-54 T 11-10-2018 IPR017039 Virulence factor BrkB dqs_1001 672232ac4dbe4d768541a86edb3933b9 214 SUPERFAMILY SSF48452 54 194 2.12E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1001 672232ac4dbe4d768541a86edb3933b9 214 Gene3D G3DSA:1.25.40.10 54 167 1.0E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1001 672232ac4dbe4d768541a86edb3933b9 214 PIRSF PIRSF006170 2 214 1.0E-51 T 11-10-2018 IPR026039 Uncharacterised protein family UPF0070 dqs_1001 672232ac4dbe4d768541a86edb3933b9 214 Pfam PF09976 Tetratricopeptide repeat-like domain 16 213 7.6E-63 T 11-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 Gene3D G3DSA:3.40.190.10 162 269 6.4E-59 T 11-10-2018 dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 3.6E-23 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 SUPERFAMILY SSF53850 91 296 2.44E-32 T 11-10-2018 dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 Gene3D G3DSA:1.10.10.10 1 90 2.4E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 Gene3D G3DSA:3.40.190.10 91 287 6.4E-59 T 11-10-2018 dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 Pfam PF03466 LysR substrate binding domain 87 293 3.5E-36 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1985 2a523d4f7a27d562321613fb7cf94213 303 SUPERFAMILY SSF46785 1 86 5.32E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2437 9437c4a2e65638252c54ef9a3ea71110 476 Gene3D G3DSA:1.20.1250.20 268 470 1.0E-18 T 11-10-2018 dqs_2437 9437c4a2e65638252c54ef9a3ea71110 476 SUPERFAMILY SSF103473 12 470 5.62E-66 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2437 9437c4a2e65638252c54ef9a3ea71110 476 Gene3D G3DSA:1.20.1720.10 25 267 1.3E-36 T 11-10-2018 dqs_2437 9437c4a2e65638252c54ef9a3ea71110 476 Pfam PF07690 Major Facilitator Superfamily 30 420 1.1E-43 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_2437 9437c4a2e65638252c54ef9a3ea71110 476 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 26 436 5.4E-74 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 dqs_1612 049cde683bad62cd04e4c7526b33c4ac 172 Pfam PF01661 Macro domain 21 133 8.6E-43 T 11-10-2018 IPR002589 Macro domain dqs_1612 049cde683bad62cd04e4c7526b33c4ac 172 SMART SM00506 4 133 1.8E-45 T 11-10-2018 IPR002589 Macro domain dqs_1612 049cde683bad62cd04e4c7526b33c4ac 172 Gene3D G3DSA:3.40.220.10 1 171 6.6E-73 T 11-10-2018 dqs_1612 049cde683bad62cd04e4c7526b33c4ac 172 SUPERFAMILY SSF52949 5 168 8.75E-64 T 11-10-2018 dqs_2662 b761233513d301d6730268ba01a31068 641 Gene3D G3DSA:3.80.30.20 366 546 2.0E-12 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe dqs_2662 b761233513d301d6730268ba01a31068 641 SUPERFAMILY SSF102114 345 536 4.9E-24 T 11-10-2018 dqs_2662 b761233513d301d6730268ba01a31068 641 Pfam PF04055 Radical SAM superfamily 371 532 9.0E-9 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_2662 b761233513d301d6730268ba01a31068 641 SUPERFAMILY SSF52242 213 290 7.06E-6 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_2662 b761233513d301d6730268ba01a31068 641 SMART SM00729 368 581 7.1E-14 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_2662 b761233513d301d6730268ba01a31068 641 Pfam PF02310 B12 binding domain 215 294 4.0E-7 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 Gene3D G3DSA:2.40.30.110 279 363 2.7E-28 T 11-10-2018 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 Gene3D G3DSA:3.30.1360.120 9 235 3.8E-85 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 5 358 2.9E-122 T 11-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 SUPERFAMILY SSF101790 274 360 3.92E-23 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 Gene3D G3DSA:4.10.1250.10 236 278 4.1E-20 T 11-10-2018 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 PIRSF PIRSF006487 1 362 7.7E-82 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 Gene3D G3DSA:3.30.70.1400 54 143 3.8E-85 T 11-10-2018 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 Hamap MF_00259 Aminomethyltransferase [gcvT]. 4 358 43.559 T 11-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 SUPERFAMILY SSF103025 4 276 3.14E-95 T 11-10-2018 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 266 352 1.3E-16 T 11-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 dqs_1402 d1f4a1314224bb84b708455a69ce3a9d 363 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 258 2.9E-87 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain dqs_0002 b255be0fc8eb33596e7f743178f01563 369 SUPERFAMILY SSF55979 6 120 1.3E-24 T 11-10-2018 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 SMART SM00480 18 365 1.8E-126 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 Pfam PF02767 DNA polymerase III beta subunit, central domain 132 246 1.7E-28 T 11-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 Gene3D G3DSA:3.10.150.10 127 250 4.8E-36 T 11-10-2018 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 5 368 4.2E-100 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 PIRSF PIRSF000804 2 369 3.6E-114 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 Gene3D G3DSA:3.10.150.10 3 123 9.1E-37 T 11-10-2018 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 6 120 1.6E-30 T 11-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 SUPERFAMILY SSF55979 128 247 2.14E-26 T 11-10-2018 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 SUPERFAMILY SSF55979 248 369 4.49E-38 T 11-10-2018 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 Gene3D G3DSA:3.10.150.10 251 369 7.4E-39 T 11-10-2018 dqs_0002 b255be0fc8eb33596e7f743178f01563 369 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 249 368 9.5E-36 T 11-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 dqs_3311 686119df3dbfa44215b586826d47ebe1 630 Gene3D G3DSA:3.40.50.12780 32 495 1.1E-93 T 11-10-2018 dqs_3311 686119df3dbfa44215b586826d47ebe1 630 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 4 58 3.8E-22 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 dqs_3311 686119df3dbfa44215b586826d47ebe1 630 ProSitePatterns PS00455 Putative AMP-binding domain signature. 239 250 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_3311 686119df3dbfa44215b586826d47ebe1 630 SUPERFAMILY SSF56801 2 627 4.45E-155 T 11-10-2018 dqs_3311 686119df3dbfa44215b586826d47ebe1 630 Gene3D G3DSA:3.30.300.30 498 630 1.3E-27 T 11-10-2018 dqs_3311 686119df3dbfa44215b586826d47ebe1 630 TIGRFAM TIGR02316 propion_prpE: propionate--CoA ligase 3 628 0.0 T 11-10-2018 IPR012694 Propionate--CoA ligase GO:0019629|GO:0050218 KEGG: 00640+6.2.1.17|MetaCyc: PWY-3941|MetaCyc: PWY-5104|MetaCyc: PWY-5747 dqs_3311 686119df3dbfa44215b586826d47ebe1 630 Pfam PF13193 AMP-binding enzyme C-terminal domain 511 594 2.0E-24 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_3311 686119df3dbfa44215b586826d47ebe1 630 Pfam PF00501 AMP-binding enzyme 60 502 6.3E-74 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_2149 289fceb39e40d7626d9f2068853a912b 336 Pfam PF02558 Ketopantoate reductase PanE/ApbA 9 174 2.0E-25 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain dqs_2149 289fceb39e40d7626d9f2068853a912b 336 Gene3D G3DSA:1.10.1040.10 201 330 3.6E-35 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_2149 289fceb39e40d7626d9f2068853a912b 336 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 202 320 6.3E-25 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain dqs_2149 289fceb39e40d7626d9f2068853a912b 336 SUPERFAMILY SSF51735 8 184 5.1E-15 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2149 289fceb39e40d7626d9f2068853a912b 336 Gene3D G3DSA:3.40.50.720 5 198 6.7E-67 T 11-10-2018 dqs_2149 289fceb39e40d7626d9f2068853a912b 336 SUPERFAMILY SSF48179 202 321 5.1E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 SUPERFAMILY SSF52540 2 205 1.2E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 PRINTS PR00315 GTP-binding elongation factor signature 90 101 2.3E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 PRINTS PR00315 GTP-binding elongation factor signature 126 135 2.3E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 PRINTS PR00315 GTP-binding elongation factor signature 6 19 2.3E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 PRINTS PR00315 GTP-binding elongation factor signature 74 84 2.3E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 PRINTS PR00315 GTP-binding elongation factor signature 49 57 2.3E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Gene3D G3DSA:3.30.70.3380 368 478 2.3E-41 T 11-10-2018 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 SUPERFAMILY SSF50447 165 288 7.49E-30 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Gene3D G3DSA:3.30.70.2570 479 553 2.5E-32 T 11-10-2018 IPR038363 LepA, C-terminal domain superfamily dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 SUPERFAMILY SSF54980 292 370 3.6E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 175 1.0E-18 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Pfam PF03144 Elongation factor Tu domain 2 205 275 1.7E-9 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Gene3D G3DSA:3.40.50.300 1 185 1.1E-72 T 11-10-2018 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Gene3D G3DSA:2.40.30.10 186 285 1.1E-33 T 11-10-2018 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Pfam PF00679 Elongation factor G C-terminus 399 484 5.0E-21 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 308.711 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Gene3D G3DSA:3.30.70.870 286 367 9.0E-36 T 11-10-2018 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 TIGRFAM TIGR01393 lepA: elongation factor 4 3 595 3.2E-302 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Pfam PF00009 Elongation factor Tu GTP binding domain 3 181 5.3E-54 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 SUPERFAMILY SSF54980 399 493 1.1E-24 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_1764 62870ac938d0635f0a3a41822cea57ce 598 Pfam PF06421 GTP-binding protein LepA C-terminus 488 593 6.1E-50 T 11-10-2018 IPR013842 GTP-binding protein LepA, C-terminal dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 SUPERFAMILY SSF54814 189 304 2.88E-41 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 Gene3D G3DSA:3.40.50.300 15 191 2.7E-46 T 11-10-2018 dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 Pfam PF01926 50S ribosome-binding GTPase 19 132 2.7E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 Pfam PF07650 KH domain 216 291 4.8E-19 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 Gene3D G3DSA:3.30.300.20 193 304 2.8E-39 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 TIGRFAM TIGR00436 era: GTP-binding protein Era 17 286 4.1E-86 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 SUPERFAMILY SSF52540 19 210 2.68E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 16 174 2.5E-33 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_1768 4675b3390c56305dcde1e3337a98d2c7 304 Hamap MF_00367 GTPase Era [era]. 14 303 36.039 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1433 10c3cbe3c6cf1f3f8bb8ab892d1183be 112 SUPERFAMILY SSF57783 3 35 4.08E-14 T 11-10-2018 dqs_1433 10c3cbe3c6cf1f3f8bb8ab892d1183be 112 Pfam PF03831 PhnA domain 45 112 7.2E-35 T 11-10-2018 IPR013988 PhnA protein, C-terminal dqs_1433 10c3cbe3c6cf1f3f8bb8ab892d1183be 112 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 3 112 2.1E-50 T 11-10-2018 IPR004624 PhnA protein dqs_1433 10c3cbe3c6cf1f3f8bb8ab892d1183be 112 Gene3D G3DSA:2.30.30.40 43 112 3.9E-36 T 11-10-2018 dqs_1433 10c3cbe3c6cf1f3f8bb8ab892d1183be 112 Gene3D G3DSA:2.20.25.10 1 42 2.9E-19 T 11-10-2018 dqs_1433 10c3cbe3c6cf1f3f8bb8ab892d1183be 112 SUPERFAMILY SSF82057 40 112 1.14E-29 T 11-10-2018 dqs_1433 10c3cbe3c6cf1f3f8bb8ab892d1183be 112 Pfam PF08274 PhnA Zinc-Ribbon 3 32 2.8E-16 T 11-10-2018 IPR013987 PhnA protein, N-terminal dqs_2488 5119bbeb74fa8c6fd5a06540e7f8462a 286 Gene3D G3DSA:1.10.10.60 166 261 2.5E-16 T 11-10-2018 dqs_2488 5119bbeb74fa8c6fd5a06540e7f8462a 286 SMART SM00342 171 257 1.6E-11 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2488 5119bbeb74fa8c6fd5a06540e7f8462a 286 Pfam PF12833 Helix-turn-helix domain 177 257 3.2E-15 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_4113 43df50688d9a51fb682251b9e9645dcd 67 Gene3D G3DSA:3.10.20.30 3 67 4.2E-21 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_4113 43df50688d9a51fb682251b9e9645dcd 67 SUPERFAMILY SSF54285 2 67 1.6E-18 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp dqs_4113 43df50688d9a51fb682251b9e9645dcd 67 Pfam PF02597 ThiS family 4 67 8.0E-17 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 dqs_4113 43df50688d9a51fb682251b9e9645dcd 67 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 4 67 5.3E-23 T 11-10-2018 IPR010035 ThiS, thiamine-biosynthesis dqs_0988 f173caf91bbe235b1a138395825c32f2 448 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 9 305 22.093 T 11-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 Pfam PF11734 TilS substrate C-terminal domain 364 428 9.3E-19 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 24 205 3.8E-45 T 11-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 Pfam PF09179 TilS substrate binding domain 248 313 4.6E-9 T 11-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 364 401 7.2E-9 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 Gene3D G3DSA:3.40.50.620 11 235 6.9E-67 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_0988 f173caf91bbe235b1a138395825c32f2 448 SUPERFAMILY SSF52402 18 235 1.79E-55 T 11-10-2018 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 Pfam PF01171 PP-loop family 24 202 2.3E-46 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 SMART SM00977 358 431 8.9E-19 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 SUPERFAMILY SSF82829 239 317 3.27E-13 T 11-10-2018 dqs_0988 f173caf91bbe235b1a138395825c32f2 448 SUPERFAMILY SSF56037 325 433 2.43E-20 T 11-10-2018 dqs_3317 9eed4269204511e170374f796c3ed100 636 Pfam PF00005 ABC transporter 336 469 1.2E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3317 9eed4269204511e170374f796c3ed100 636 SUPERFAMILY SSF52540 314 510 1.56E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3317 9eed4269204511e170374f796c3ed100 636 Gene3D G3DSA:3.40.50.300 10 279 1.5E-65 T 11-10-2018 dqs_3317 9eed4269204511e170374f796c3ed100 636 Pfam PF16326 ABC transporter C-terminal domain 562 630 1.8E-21 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 dqs_3317 9eed4269204511e170374f796c3ed100 636 SMART SM00382 344 515 2.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3317 9eed4269204511e170374f796c3ed100 636 SMART SM00382 28 230 3.0E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3317 9eed4269204511e170374f796c3ed100 636 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3317 9eed4269204511e170374f796c3ed100 636 Pfam PF12848 ABC transporter 224 297 4.2E-10 T 11-10-2018 IPR032781 ABC-transporter extension domain dqs_3317 9eed4269204511e170374f796c3ed100 636 Pfam PF00005 ABC transporter 19 185 3.3E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3317 9eed4269204511e170374f796c3ed100 636 Gene3D G3DSA:1.10.287.380 553 636 2.0E-25 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 dqs_3317 9eed4269204511e170374f796c3ed100 636 SUPERFAMILY SSF52540 4 231 1.01E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3317 9eed4269204511e170374f796c3ed100 636 Gene3D G3DSA:3.40.50.300 281 545 5.4E-63 T 11-10-2018 dqs_4077 cae11bd3b4939b69cf41681492d376ea 258 Pfam PF01578 Cytochrome C assembly protein 32 189 5.2E-25 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 dqs_4077 cae11bd3b4939b69cf41681492d376ea 258 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 50 67 1.1E-40 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4077 cae11bd3b4939b69cf41681492d376ea 258 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 161 187 1.1E-40 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4077 cae11bd3b4939b69cf41681492d376ea 258 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 126 146 1.1E-40 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4077 cae11bd3b4939b69cf41681492d376ea 258 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 67 87 1.1E-40 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4077 cae11bd3b4939b69cf41681492d376ea 258 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 105 125 1.1E-40 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4077 cae11bd3b4939b69cf41681492d376ea 258 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 50 232 2.1E-63 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 SMART SM00994 11 50 4.1E-24 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 9 411 9.9E-206 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 SMART SM01086 316 410 9.8E-33 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 Pfam PF06689 ClpX C4-type zinc finger 12 48 3.7E-20 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 414 53.704 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 SUPERFAMILY SSF52540 62 401 4.63E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 316 387 1.0E-13 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 Gene3D G3DSA:3.30.50.30 2 51 8.4E-25 T 11-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 Gene3D G3DSA:1.10.8.60 315 421 2.2E-39 T 11-10-2018 dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 SUPERFAMILY SSF57716 12 47 8.98E-12 T 11-10-2018 dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 Gene3D G3DSA:3.40.50.300 57 314 4.1E-110 T 11-10-2018 dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 SMART SM00382 112 332 2.7E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2199 bf05245f60ac7b4a6d7c440f455ef057 422 Pfam PF07724 AAA domain (Cdc48 subfamily) 113 309 6.4E-50 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 TIGRFAM TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC 8 514 8.5E-241 T 11-10-2018 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC GO:0008691|GO:0010124 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 Gene3D G3DSA:3.30.750.190 298 424 1.0E-90 T 11-10-2018 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 13 191 7.2E-60 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 SUPERFAMILY SSF48179 427 510 2.04E-17 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 SUPERFAMILY SSF48179 193 300 2.81E-32 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 SUPERFAMILY SSF51735 13 193 1.4E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 Gene3D G3DSA:1.10.1040.50 198 506 1.0E-90 T 11-10-2018 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 Gene3D G3DSA:3.40.50.720 11 197 6.3E-67 T 11-10-2018 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 428 506 1.2E-13 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_0314 f920fb791a79c44fb68aa5e75c786a83 515 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 194 291 2.0E-30 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_3107 b90143e78c32dab6f5db201e6df42551 625 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 276 297 - T 11-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 dqs_3107 b90143e78c32dab6f5db201e6df42551 625 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 27 591 4.5E-216 T 11-10-2018 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 dqs_3107 b90143e78c32dab6f5db201e6df42551 625 Gene3D G3DSA:2.140.10.10 29 621 1.8E-228 T 11-10-2018 dqs_3107 b90143e78c32dab6f5db201e6df42551 625 SMART SM00564 91 123 3.7E-5 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3107 b90143e78c32dab6f5db201e6df42551 625 SMART SM00564 531 563 4.1E-8 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3107 b90143e78c32dab6f5db201e6df42551 625 SMART SM00564 457 522 76.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3107 b90143e78c32dab6f5db201e6df42551 625 SMART SM00564 190 229 290.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3107 b90143e78c32dab6f5db201e6df42551 625 SMART SM00564 141 172 3.2E-6 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3107 b90143e78c32dab6f5db201e6df42551 625 Pfam PF01011 PQQ enzyme repeat 537 573 9.4E-11 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_3107 b90143e78c32dab6f5db201e6df42551 625 Pfam PF13360 PQQ-like domain 76 235 4.2E-14 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_3107 b90143e78c32dab6f5db201e6df42551 625 SUPERFAMILY SSF50998 40 614 1.96E-130 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily dqs_1691 0bdea50303947b0c29f4a87ab9c1d891 632 Pfam PF13616 PPIC-type PPIASE domain 263 368 4.5E-26 T 11-10-2018 dqs_1691 0bdea50303947b0c29f4a87ab9c1d891 632 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 306 327 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 dqs_1691 0bdea50303947b0c29f4a87ab9c1d891 632 SUPERFAMILY SSF109998 39 294 4.32E-36 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily dqs_1691 0bdea50303947b0c29f4a87ab9c1d891 632 Pfam PF13624 SurA N-terminal domain 1 161 1.1E-47 T 11-10-2018 dqs_1691 0bdea50303947b0c29f4a87ab9c1d891 632 Gene3D G3DSA:3.10.50.40 265 369 2.0E-37 T 11-10-2018 dqs_1691 0bdea50303947b0c29f4a87ab9c1d891 632 Gene3D G3DSA:1.10.4030.30 40 209 8.3E-13 T 11-10-2018 dqs_1691 0bdea50303947b0c29f4a87ab9c1d891 632 Gene3D G3DSA:1.10.4030.30 239 379 2.0E-37 T 11-10-2018 dqs_1691 0bdea50303947b0c29f4a87ab9c1d891 632 SUPERFAMILY SSF54534 257 367 1.37E-28 T 11-10-2018 dqs_0892 1a98ab00b2bbae54083b807454097752 378 Pfam PF01734 Patatin-like phospholipase 10 222 3.4E-22 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 dqs_0892 1a98ab00b2bbae54083b807454097752 378 SUPERFAMILY SSF52151 6 235 2.35E-46 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase dqs_0892 1a98ab00b2bbae54083b807454097752 378 Gene3D G3DSA:3.40.1090.10 3 139 2.5E-17 T 11-10-2018 dqs_0526 890b6792da46c27c18565970e5161601 175 Pfam PF04060 Putative Fe-S cluster 42 73 9.8E-11 T 11-10-2018 IPR007202 4Fe-4S domain GO:0051536 dqs_0526 890b6792da46c27c18565970e5161601 175 SUPERFAMILY SSF54862 35 169 2.23E-24 T 11-10-2018 dqs_0526 890b6792da46c27c18565970e5161601 175 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 173 1.9E-55 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 dqs_0526 890b6792da46c27c18565970e5161601 175 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 1 162 23.027 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 dqs_0526 890b6792da46c27c18565970e5161601 175 Pfam PF14697 4Fe-4S dicluster domain 103 156 3.8E-14 T 11-10-2018 dqs_0526 890b6792da46c27c18565970e5161601 175 Gene3D G3DSA:3.20.20.20 32 105 4.2E-11 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_0526 890b6792da46c27c18565970e5161601 175 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 140 151 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_0526 890b6792da46c27c18565970e5161601 175 PIRSF PIRSF005784 1 175 3.1E-55 T 11-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 dqs_0526 890b6792da46c27c18565970e5161601 175 Gene3D G3DSA:3.30.70.20 106 158 1.2E-12 T 11-10-2018 dqs_2538 b702d79cf6fb7efc10f07af0b3f401dd 242 Gene3D G3DSA:3.40.30.10 100 238 1.7E-13 T 11-10-2018 dqs_2538 b702d79cf6fb7efc10f07af0b3f401dd 242 SUPERFAMILY SSF52833 104 223 3.9E-11 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2538 b702d79cf6fb7efc10f07af0b3f401dd 242 Pfam PF13098 Thioredoxin-like domain 114 206 1.5E-11 T 11-10-2018 IPR012336 Thioredoxin-like fold dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 SUPERFAMILY SSF58104 236 544 2.7E-72 T 11-10-2018 dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 Gene3D G3DSA:1.10.287.950 216 545 1.1E-68 T 11-10-2018 dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 SUPERFAMILY SSF55785 22 115 1.12E-26 T 11-10-2018 IPR035965 PAS domain superfamily dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 345 512 1.0E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 SMART SM00283 283 544 1.7E-77 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 SMART SM00091 9 76 2.0E-4 T 11-10-2018 IPR000014 PAS domain dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 25 113 1.9E-15 T 11-10-2018 IPR000014 PAS domain dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 Gene3D G3DSA:3.30.450.20 2 142 3.4E-25 T 11-10-2018 dqs_4080 b2254413ed53448cb48f4879d0c5f218 545 Pfam PF08447 PAS fold 33 115 1.1E-14 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 169 397 7.0E-79 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 Gene3D G3DSA:4.10.320.10 104 152 9.4E-11 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 Gene3D G3DSA:2.40.50.100 2 99 4.4E-23 T 11-10-2018 dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 SUPERFAMILY SSF51230 1 91 6.41E-26 T 11-10-2018 IPR011053 Single hybrid motif dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 Pfam PF02817 e3 binding domain 114 145 1.1E-11 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 SUPERFAMILY SSF47005 110 149 4.84E-9 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 SUPERFAMILY SSF52777 170 399 2.45E-86 T 11-10-2018 dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 400 2.0E-168 T 11-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 Pfam PF00364 Biotin-requiring enzyme 4 76 1.0E-18 T 11-10-2018 IPR000089 Biotin/lipoyl attachment dqs_1679 e7c545b5442086de9ea03b8367c7b1f5 400 Gene3D G3DSA:3.30.559.10 168 400 4.1E-93 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 13 958 25.352 T 11-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 Pfam PF02347 Glycine cleavage system P-protein 478 741 8.9E-7 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 Pfam PF02347 Glycine cleavage system P-protein 21 444 1.6E-173 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 SUPERFAMILY SSF53383 21 444 1.2E-101 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 Gene3D G3DSA:3.40.640.10 100 358 2.4E-103 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 Gene3D G3DSA:3.40.640.10 522 754 4.4E-60 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 22 952 0.0 T 11-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 SUPERFAMILY SSF53383 470 953 2.64E-95 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1400 c068345dbb6958d36f6c03d72ff0072c 959 Gene3D G3DSA:3.90.1150.10 766 904 1.2E-39 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 SUPERFAMILY SSF53092 11 183 3.66E-52 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 357 369 - T 11-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 Pfam PF05195 Aminopeptidase P, N-terminal domain 15 131 7.0E-35 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 SMART SM01011 10 145 3.8E-63 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 Pfam PF00557 Metallopeptidase family M24 190 421 1.7E-65 T 11-10-2018 IPR000994 Peptidase M24 dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 Gene3D G3DSA:3.40.350.10 12 180 4.0E-49 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 PRINTS PR00599 Methionine aminopeptidase-1 signature 380 392 7.8E-8 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 PRINTS PR00599 Methionine aminopeptidase-1 signature 240 253 7.8E-8 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 PRINTS PR00599 Methionine aminopeptidase-1 signature 262 278 7.8E-8 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 Gene3D G3DSA:3.90.230.10 181 447 7.1E-102 T 11-10-2018 dqs_3030 efc4a5ddb815f4be5dc8529e801d5ecb 448 SUPERFAMILY SSF55920 184 444 4.71E-87 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like dqs_1913 f721894501e59543e71c68dcff117f7a 472 SMART SM00228 378 455 0.59 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_1913 f721894501e59543e71c68dcff117f7a 472 SMART SM00228 270 350 2.7E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_1913 f721894501e59543e71c68dcff117f7a 472 Pfam PF13180 PDZ domain 270 358 1.9E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_1913 f721894501e59543e71c68dcff117f7a 472 Gene3D G3DSA:2.30.42.10 396 467 3.1E-7 T 11-10-2018 dqs_1913 f721894501e59543e71c68dcff117f7a 472 PRINTS PR00834 HtrA/DegQ protease family signature 309 321 1.4E-44 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1913 f721894501e59543e71c68dcff117f7a 472 PRINTS PR00834 HtrA/DegQ protease family signature 168 192 1.4E-44 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1913 f721894501e59543e71c68dcff117f7a 472 PRINTS PR00834 HtrA/DegQ protease family signature 128 148 1.4E-44 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1913 f721894501e59543e71c68dcff117f7a 472 PRINTS PR00834 HtrA/DegQ protease family signature 202 219 1.4E-44 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1913 f721894501e59543e71c68dcff117f7a 472 PRINTS PR00834 HtrA/DegQ protease family signature 106 118 1.4E-44 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1913 f721894501e59543e71c68dcff117f7a 472 PRINTS PR00834 HtrA/DegQ protease family signature 224 241 1.4E-44 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_1913 f721894501e59543e71c68dcff117f7a 472 SUPERFAMILY SSF50156 228 347 3.42E-18 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_1913 f721894501e59543e71c68dcff117f7a 472 SUPERFAMILY SSF50156 406 464 3.68E-8 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_1913 f721894501e59543e71c68dcff117f7a 472 Pfam PF13365 Trypsin-like peptidase domain 97 231 1.5E-33 T 11-10-2018 dqs_1913 f721894501e59543e71c68dcff117f7a 472 SUPERFAMILY SSF50494 40 262 5.38E-58 T 11-10-2018 IPR009003 Peptidase S1, PA clan dqs_1913 f721894501e59543e71c68dcff117f7a 472 Gene3D G3DSA:2.40.10.120 39 263 6.7E-72 T 11-10-2018 dqs_1913 f721894501e59543e71c68dcff117f7a 472 Gene3D G3DSA:2.30.42.10 265 367 4.3E-21 T 11-10-2018 dqs_3053 42e87d93ee9c2319f1e78cdec50d62be 143 SUPERFAMILY SSF54523 1 104 2.12E-15 T 11-10-2018 dqs_3053 42e87d93ee9c2319f1e78cdec50d62be 143 Pfam PF12019 Type II transport protein GspH 31 139 1.2E-13 T 11-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 dqs_3053 42e87d93ee9c2319f1e78cdec50d62be 143 Gene3D G3DSA:3.30.700.10 1 141 3.8E-11 T 11-10-2018 dqs_2962 a9233d147570e64261da16e2fb7c12b6 208 SUPERFAMILY SSF46626 21 107 2.28E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2962 a9233d147570e64261da16e2fb7c12b6 208 Gene3D G3DSA:1.10.760.10 27 109 1.2E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2962 a9233d147570e64261da16e2fb7c12b6 208 Gene3D G3DSA:1.10.760.10 114 208 4.0E-25 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2962 a9233d147570e64261da16e2fb7c12b6 208 SUPERFAMILY SSF46626 117 206 4.07E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2962 a9233d147570e64261da16e2fb7c12b6 208 Pfam PF00034 Cytochrome c 27 106 1.6E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2962 a9233d147570e64261da16e2fb7c12b6 208 Pfam PF00034 Cytochrome c 123 203 2.4E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2962 a9233d147570e64261da16e2fb7c12b6 208 PIRSF PIRSF000005 1 208 9.3E-61 T 11-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 dqs_0656 cc6d544228330c266f94adddce34ec95 469 SMART SM00997 230 389 7.3E-115 T 11-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 dqs_0656 cc6d544228330c266f94adddce34ec95 469 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 10 461 2.5E-189 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 dqs_0656 cc6d544228330c266f94adddce34ec95 469 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 5 461 49.169 T 11-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 dqs_0656 cc6d544228330c266f94adddce34ec95 469 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 252 268 - T 11-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 dqs_0656 cc6d544228330c266f94adddce34ec95 469 SMART SM00996 9 468 0.0 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 dqs_0656 cc6d544228330c266f94adddce34ec95 469 SUPERFAMILY SSF51735 230 389 1.13E-80 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0656 cc6d544228330c266f94adddce34ec95 469 Gene3D G3DSA:3.40.50.720 232 389 4.8E-240 T 11-10-2018 dqs_0656 cc6d544228330c266f94adddce34ec95 469 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 230 389 7.3E-83 T 11-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 dqs_0656 cc6d544228330c266f94adddce34ec95 469 Gene3D G3DSA:3.40.50.1480 10 469 4.8E-240 T 11-10-2018 dqs_0656 cc6d544228330c266f94adddce34ec95 469 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 81 95 - T 11-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 dqs_0656 cc6d544228330c266f94adddce34ec95 469 SUPERFAMILY SSF52283 7 469 4.65E-116 T 11-10-2018 dqs_0656 cc6d544228330c266f94adddce34ec95 469 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 9 468 2.2E-147 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 dqs_0656 cc6d544228330c266f94adddce34ec95 469 PIRSF PIRSF001109 1 469 8.6E-192 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 dqs_3347 d8694686cd24af51696f82c69dc7e6df 390 Pfam PF02253 Phospholipase A1 173 388 2.7E-40 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 dqs_3347 d8694686cd24af51696f82c69dc7e6df 390 PRINTS PR01486 Bacterial phospholipase A1 protein signature 169 186 1.0E-15 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 dqs_3347 d8694686cd24af51696f82c69dc7e6df 390 PRINTS PR01486 Bacterial phospholipase A1 protein signature 360 380 1.0E-15 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 dqs_3347 d8694686cd24af51696f82c69dc7e6df 390 PRINTS PR01486 Bacterial phospholipase A1 protein signature 299 317 1.0E-15 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 dqs_3347 d8694686cd24af51696f82c69dc7e6df 390 PRINTS PR01486 Bacterial phospholipase A1 protein signature 247 261 1.0E-15 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 dqs_3347 d8694686cd24af51696f82c69dc7e6df 390 SUPERFAMILY SSF56931 153 389 2.88E-61 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 dqs_3347 d8694686cd24af51696f82c69dc7e6df 390 Gene3D G3DSA:2.40.230.10 153 390 8.6E-59 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 dqs_2360 3944c1e37791a48e55132ba8346de583 889 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 341 456 2.3E-15 T 11-10-2018 IPR000014 PAS domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 216 334 1.1E-14 T 11-10-2018 IPR000014 PAS domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 SUPERFAMILY SSF55785 325 448 6.11E-27 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2360 3944c1e37791a48e55132ba8346de583 889 Pfam PF00990 Diguanylate cyclase, GGDEF domain 461 619 9.4E-50 T 11-10-2018 IPR000160 GGDEF domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 SMART SM00052 633 879 6.1E-100 T 11-10-2018 IPR001633 EAL domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 SUPERFAMILY SSF55073 466 625 4.39E-48 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2360 3944c1e37791a48e55132ba8346de583 889 Pfam PF00563 EAL domain 639 874 3.1E-69 T 11-10-2018 IPR001633 EAL domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 SMART SM00267 450 623 2.2E-66 T 11-10-2018 IPR000160 GGDEF domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 SMART SM00086 408 450 0.051 T 11-10-2018 IPR001610 PAC motif dqs_2360 3944c1e37791a48e55132ba8346de583 889 SMART SM00086 291 328 0.56 T 11-10-2018 IPR001610 PAC motif dqs_2360 3944c1e37791a48e55132ba8346de583 889 SMART SM00091 336 402 1.7E-8 T 11-10-2018 IPR000014 PAS domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 SMART SM00091 219 285 0.56 T 11-10-2018 IPR000014 PAS domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 Pfam PF08448 PAS fold 228 330 1.5E-13 T 11-10-2018 IPR013656 PAS fold-4 dqs_2360 3944c1e37791a48e55132ba8346de583 889 Gene3D G3DSA:3.30.450.20 205 338 3.4E-21 T 11-10-2018 dqs_2360 3944c1e37791a48e55132ba8346de583 889 SUPERFAMILY SSF141868 638 884 1.7E-80 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2360 3944c1e37791a48e55132ba8346de583 889 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 459 622 3.1E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 SUPERFAMILY SSF55785 207 326 2.44E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2360 3944c1e37791a48e55132ba8346de583 889 Gene3D G3DSA:3.20.20.450 635 886 6.8E-91 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2360 3944c1e37791a48e55132ba8346de583 889 Gene3D G3DSA:3.30.450.20 339 463 2.5E-30 T 11-10-2018 dqs_2360 3944c1e37791a48e55132ba8346de583 889 Pfam PF13426 PAS domain 347 449 1.6E-11 T 11-10-2018 IPR000014 PAS domain dqs_2360 3944c1e37791a48e55132ba8346de583 889 Gene3D G3DSA:3.30.70.270 464 634 2.5E-57 T 11-10-2018 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 Gene3D G3DSA:1.10.520.10 433 732 3.1E-153 T 11-10-2018 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 480 506 5.8E-56 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 50 63 5.8E-56 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 24 46 5.8E-56 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 265 288 5.8E-56 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 65 90 5.8E-56 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 18 732 0.0 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00458 Haem peroxidase superfamily signature 166 178 5.6E-19 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00458 Haem peroxidase superfamily signature 257 272 5.6E-19 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00458 Haem peroxidase superfamily signature 148 165 5.6E-19 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00458 Haem peroxidase superfamily signature 88 102 5.6E-19 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 PRINTS PR00458 Haem peroxidase superfamily signature 316 331 5.6E-19 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 SUPERFAMILY SSF48113 430 732 2.06E-116 T 11-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 Gene3D G3DSA:1.10.520.10 20 430 1.0E-222 T 11-10-2018 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 ProSitePatterns PS00436 Peroxidases active site signature. 88 99 - T 11-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 Pfam PF00141 Peroxidase 80 395 4.5E-47 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 Pfam PF00141 Peroxidase 402 707 4.8E-42 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 Hamap MF_01961 Catalase-peroxidase [katG]. 2 733 43.139 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 SUPERFAMILY SSF48113 16 429 4.42E-155 T 11-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 Gene3D G3DSA:1.10.420.20 189 397 1.0E-222 T 11-10-2018 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 Gene3D G3DSA:1.10.420.10 588 708 3.1E-153 T 11-10-2018 dqs_3125 9a160cb6449fcef8930997106894fc3f 733 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 257 267 - T 11-10-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 dqs_2693 e2fa567b76bfc41ac865f4e93da45daf 319 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 124 1.1E-22 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 dqs_2693 e2fa567b76bfc41ac865f4e93da45daf 319 Gene3D G3DSA:3.40.50.720 5 297 1.4E-54 T 11-10-2018 dqs_2693 e2fa567b76bfc41ac865f4e93da45daf 319 SUPERFAMILY SSF51735 2 144 8.03E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2693 e2fa567b76bfc41ac865f4e93da45daf 319 Gene3D G3DSA:3.30.360.10 125 307 1.4E-54 T 11-10-2018 dqs_2693 e2fa567b76bfc41ac865f4e93da45daf 319 SUPERFAMILY SSF55347 129 261 4.36E-11 T 11-10-2018 dqs_4003 a5ca8f09b13bcabf4fd818e374167c49 306 Gene3D G3DSA:3.40.190.10 95 292 2.2E-63 T 11-10-2018 dqs_4003 a5ca8f09b13bcabf4fd818e374167c49 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_4003 a5ca8f09b13bcabf4fd818e374167c49 306 SUPERFAMILY SSF46785 7 87 2.83E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_4003 a5ca8f09b13bcabf4fd818e374167c49 306 Gene3D G3DSA:1.10.10.10 6 92 1.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_4003 a5ca8f09b13bcabf4fd818e374167c49 306 SUPERFAMILY SSF53850 93 295 1.81E-41 T 11-10-2018 dqs_4003 a5ca8f09b13bcabf4fd818e374167c49 306 Gene3D G3DSA:3.40.190.10 166 267 2.2E-63 T 11-10-2018 dqs_4003 a5ca8f09b13bcabf4fd818e374167c49 306 Pfam PF03466 LysR substrate binding domain 93 295 1.8E-41 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3413 8d986d7ee154b76025be57ad655fd8f3 391 Pfam PF00534 Glycosyl transferases group 1 196 355 7.0E-37 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_3413 8d986d7ee154b76025be57ad655fd8f3 391 Pfam PF13439 Glycosyltransferase Family 4 17 178 1.3E-18 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3413 8d986d7ee154b76025be57ad655fd8f3 391 TIGRFAM TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated 5 377 2.1E-161 T 11-10-2018 IPR017522 Sugar transferase, PEP-CTERM, Stp2 dqs_3413 8d986d7ee154b76025be57ad655fd8f3 391 SUPERFAMILY SSF53756 8 375 7.42E-81 T 11-10-2018 dqs_3413 8d986d7ee154b76025be57ad655fd8f3 391 Gene3D G3DSA:3.40.50.2000 174 360 2.4E-71 T 11-10-2018 dqs_3413 8d986d7ee154b76025be57ad655fd8f3 391 Gene3D G3DSA:3.40.50.2000 17 370 2.4E-71 T 11-10-2018 dqs_0388 45390176efafe8e453765fa736f49622 706 SUPERFAMILY SSF52768 14 304 1.03E-64 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily dqs_0388 45390176efafe8e453765fa736f49622 706 ProSitePatterns PS01053 Arginase family signature. 233 254 - T 11-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 dqs_0388 45390176efafe8e453765fa736f49622 706 Pfam PF00491 Arginase family 14 302 9.3E-52 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 dqs_0388 45390176efafe8e453765fa736f49622 706 Gene3D G3DSA:3.40.640.10 361 611 1.5E-138 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_0388 45390176efafe8e453765fa736f49622 706 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 312 701 1.8E-147 T 11-10-2018 IPR010164 Ornithine aminotransferase GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|Reactome: R-HSA-70614 dqs_0388 45390176efafe8e453765fa736f49622 706 Gene3D G3DSA:3.90.1150.10 316 692 1.5E-138 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_0388 45390176efafe8e453765fa736f49622 706 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 526 563 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_0388 45390176efafe8e453765fa736f49622 706 PRINTS PR00116 Arginase signature 178 196 4.0E-27 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 dqs_0388 45390176efafe8e453765fa736f49622 706 PRINTS PR00116 Arginase signature 230 259 4.0E-27 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 dqs_0388 45390176efafe8e453765fa736f49622 706 PRINTS PR00116 Arginase signature 265 279 4.0E-27 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 dqs_0388 45390176efafe8e453765fa736f49622 706 PRINTS PR00116 Arginase signature 126 153 4.0E-27 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 dqs_0388 45390176efafe8e453765fa736f49622 706 PRINTS PR00116 Arginase signature 102 117 4.0E-27 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 dqs_0388 45390176efafe8e453765fa736f49622 706 Gene3D G3DSA:3.40.800.10 11 315 2.0E-75 T 11-10-2018 dqs_0388 45390176efafe8e453765fa736f49622 706 SUPERFAMILY SSF53383 310 702 1.04E-122 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_0388 45390176efafe8e453765fa736f49622 706 Pfam PF00202 Aminotransferase class-III 319 701 1.3E-110 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF13432 Tetratricopeptide repeat 144 205 0.0077 T 11-10-2018 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF13432 Tetratricopeptide repeat 450 511 8.1E-6 T 11-10-2018 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF13432 Tetratricopeptide repeat 43 97 1.4E-4 T 11-10-2018 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF13432 Tetratricopeptide repeat 213 275 2.5E-6 T 11-10-2018 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF13432 Tetratricopeptide repeat 622 682 3.2E-7 T 11-10-2018 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SUPERFAMILY SSF48452 143 311 1.18E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF14559 Tetratricopeptide repeat 864 918 2.2E-6 T 11-10-2018 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF14559 Tetratricopeptide repeat 524 568 2.5E-7 T 11-10-2018 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 411 444 8.7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 377 410 16.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 819 851 350.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 616 649 41.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 309 342 1.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 173 206 180.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 479 512 5.2E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 650 683 1.7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 139 172 21.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 718 751 170.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 207 240 0.027 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 275 308 130.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 70 103 99.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 852 885 270.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SMART SM00028 547 581 160.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF13181 Tetratricopeptide repeat 310 341 0.032 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Pfam PF13181 Tetratricopeptide repeat 381 409 0.12 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Gene3D G3DSA:1.25.40.10 569 915 1.8E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Gene3D G3DSA:1.25.40.10 28 373 1.5E-46 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 Gene3D G3DSA:1.25.40.10 374 568 2.1E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SUPERFAMILY SSF48452 435 746 2.84E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 TIGRFAM TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein 24 911 2.7E-256 T 11-10-2018 IPR014266 PEP-CTERM system TPR-repeat lipoprotein, putative dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SUPERFAMILY SSF48452 36 128 3.8E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SUPERFAMILY SSF48452 289 456 6.61E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3323 e1d999b5405b540d55637f8bfc8bee6e 933 SUPERFAMILY SSF48452 761 911 3.25E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0297 0df5cb1711f3f87d6d4031c1f6af2d05 355 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 72 209 1.4E-10 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal dqs_0297 0df5cb1711f3f87d6d4031c1f6af2d05 355 Gene3D G3DSA:3.40.47.10 16 220 2.7E-12 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0297 0df5cb1711f3f87d6d4031c1f6af2d05 355 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 219 318 1.5E-15 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal dqs_0297 0df5cb1711f3f87d6d4031c1f6af2d05 355 Gene3D G3DSA:3.40.47.10 221 325 2.1E-16 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0297 0df5cb1711f3f87d6d4031c1f6af2d05 355 SUPERFAMILY SSF53901 69 349 3.8E-25 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_1055 d11e0e73568ab716db188f256fefb371 479 Gene3D G3DSA:1.10.443.10 222 400 2.0E-25 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 dqs_1055 d11e0e73568ab716db188f256fefb371 479 SUPERFAMILY SSF56349 138 390 3.83E-41 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 dqs_1055 d11e0e73568ab716db188f256fefb371 479 Gene3D G3DSA:1.10.150.130 123 221 4.8E-6 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal dqs_1055 d11e0e73568ab716db188f256fefb371 479 Pfam PF00589 Phage integrase family 246 384 1.3E-15 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 dqs_1007 076ea7cc70871273587c4ff695e638ef 293 PIRSF PIRSF005651 1 293 1.0E-97 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 dqs_1007 076ea7cc70871273587c4ff695e638ef 293 Pfam PF01145 SPFH domain / Band 7 family 25 201 2.3E-30 T 11-10-2018 IPR001107 Band 7 domain dqs_1007 076ea7cc70871273587c4ff695e638ef 293 TIGRFAM TIGR01932 hflC: HflC protein 142 285 2.0E-48 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 dqs_1007 076ea7cc70871273587c4ff695e638ef 293 SUPERFAMILY SSF117892 53 191 3.66E-31 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily dqs_1007 076ea7cc70871273587c4ff695e638ef 293 SMART SM00244 21 185 4.8E-32 T 11-10-2018 IPR001107 Band 7 domain dqs_1007 076ea7cc70871273587c4ff695e638ef 293 PRINTS PR00721 Stomatin signature 161 179 6.9E-5 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_1007 076ea7cc70871273587c4ff695e638ef 293 PRINTS PR00721 Stomatin signature 77 98 6.9E-5 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_1007 076ea7cc70871273587c4ff695e638ef 293 PRINTS PR00721 Stomatin signature 180 201 6.9E-5 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_1007 076ea7cc70871273587c4ff695e638ef 293 Gene3D G3DSA:3.30.479.30 50 187 5.8E-26 T 11-10-2018 dqs_2299 8ccf86f2cbfeee2bb1426b809ec7b063 314 Gene3D G3DSA:2.70.70.10 155 313 2.8E-47 T 11-10-2018 IPR011055 Duplicated hybrid motif dqs_2299 8ccf86f2cbfeee2bb1426b809ec7b063 314 Pfam PF01551 Peptidase family M23 213 307 1.3E-31 T 11-10-2018 IPR016047 Peptidase M23 dqs_2299 8ccf86f2cbfeee2bb1426b809ec7b063 314 SUPERFAMILY SSF51261 176 311 4.45E-53 T 11-10-2018 IPR011055 Duplicated hybrid motif dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 Gene3D G3DSA:3.40.640.10 64 304 4.9E-162 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 Pfam PF00155 Aminotransferase class I and II 31 396 9.2E-80 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 Gene3D G3DSA:3.90.1150.10 9 396 4.9E-162 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 SUPERFAMILY SSF53383 3 401 4.57E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 PRINTS PR00799 Aspartate aminotransferase signature 210 222 1.3E-38 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 PRINTS PR00799 Aspartate aminotransferase signature 179 198 1.3E-38 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 PRINTS PR00799 Aspartate aminotransferase signature 345 363 1.3E-38 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 PRINTS PR00799 Aspartate aminotransferase signature 277 302 1.3E-38 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 dqs_1735 28c3863948f2c2063c93bd35ea3c212e 402 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 247 260 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 dqs_2177 e5310f0a0e4ba576c2d6c17ee3da1142 177 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 33 173 1.9E-33 T 11-10-2018 IPR019587 Polyketide cyclase/dehydrase dqs_2177 e5310f0a0e4ba576c2d6c17ee3da1142 177 SUPERFAMILY SSF55961 33 172 1.22E-29 T 11-10-2018 dqs_2177 e5310f0a0e4ba576c2d6c17ee3da1142 177 Gene3D G3DSA:3.30.530.20 31 175 9.1E-41 T 11-10-2018 IPR023393 START-like domain superfamily dqs_3263 c12437ecdcd19fed302e7b3c7a2c564a 320 SUPERFAMILY SSF52540 13 238 1.4E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3263 c12437ecdcd19fed302e7b3c7a2c564a 320 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 11 319 28.065 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 dqs_3263 c12437ecdcd19fed302e7b3c7a2c564a 320 Gene3D G3DSA:1.10.20.140 118 190 3.6E-94 T 11-10-2018 dqs_3263 c12437ecdcd19fed302e7b3c7a2c564a 320 Gene3D G3DSA:3.40.50.300 15 289 3.6E-94 T 11-10-2018 dqs_3263 c12437ecdcd19fed302e7b3c7a2c564a 320 Pfam PF01715 IPP transferase 45 288 1.5E-81 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 dqs_3263 c12437ecdcd19fed302e7b3c7a2c564a 320 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 289 5.6E-88 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 dqs_3263 c12437ecdcd19fed302e7b3c7a2c564a 320 SUPERFAMILY SSF52540 13 157 1.47E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1639 02fad1173fe3e20ba227e04d51c73bd7 309 SUPERFAMILY SSF50249 17 73 7.8E-6 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1639 02fad1173fe3e20ba227e04d51c73bd7 309 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 50 295 5.5E-61 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 dqs_1639 02fad1173fe3e20ba227e04d51c73bd7 309 Pfam PF03193 RsgA GTPase 70 238 1.8E-44 T 11-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 dqs_1639 02fad1173fe3e20ba227e04d51c73bd7 309 Gene3D G3DSA:1.10.40.50 239 306 1.5E-23 T 11-10-2018 dqs_1639 02fad1173fe3e20ba227e04d51c73bd7 309 SUPERFAMILY SSF52540 85 300 1.41E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1639 02fad1173fe3e20ba227e04d51c73bd7 309 Gene3D G3DSA:2.40.50.140 14 70 2.3E-8 T 11-10-2018 dqs_1639 02fad1173fe3e20ba227e04d51c73bd7 309 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 16 303 33.326 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 dqs_1639 02fad1173fe3e20ba227e04d51c73bd7 309 Gene3D G3DSA:3.40.50.300 73 238 1.9E-34 T 11-10-2018 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 SMART SM00260 476 610 9.3E-24 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Pfam PF01584 CheW-like domain 489 612 5.1E-20 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 SMART SM00073 7 104 8.2E-23 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 462 2.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 481 2.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 2.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 SUPERFAMILY SSF50341 483 610 1.44E-23 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Gene3D G3DSA:2.40.50.180 507 567 1.0E-24 T 11-10-2018 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 229 296 3.4E-10 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Gene3D G3DSA:1.10.287.560 228 296 1.1E-12 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Gene3D G3DSA:1.20.120.160 5 143 2.3E-33 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 SMART SM01231 228 296 5.5E-13 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 SUPERFAMILY SSF47384 229 297 3.73E-8 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Gene3D G3DSA:2.30.30.40 484 605 1.0E-24 T 11-10-2018 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Pfam PF01627 Hpt domain 9 98 1.6E-16 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 SMART SM00387 341 484 1.6E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 483 3.7E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 SUPERFAMILY SSF55874 299 482 6.16E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 SUPERFAMILY SSF47226 7 129 4.58E-29 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_1585 d2c3045c675ba5ab80feca3483b2dc1d 634 Gene3D G3DSA:3.30.565.10 297 483 4.2E-57 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2894 95752f55f8b9dc481a6b6f59aff88eb7 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 11-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 dqs_2894 95752f55f8b9dc481a6b6f59aff88eb7 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.3E-45 T 11-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 dqs_2894 95752f55f8b9dc481a6b6f59aff88eb7 130 SUPERFAMILY SSF54211 5 130 7.21E-47 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_2894 95752f55f8b9dc481a6b6f59aff88eb7 130 Gene3D G3DSA:3.30.230.10 1 130 3.9E-51 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_2894 95752f55f8b9dc481a6b6f59aff88eb7 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 32.856 T 11-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 Pfam PF00106 short chain dehydrogenase 4 197 7.6E-65 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 245 2.7E-120 T 11-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.2E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.2E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.2E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.2E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 1.2E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.2E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 SUPERFAMILY SSF51735 3 245 6.67E-83 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 184 1.6E-4 T 11-10-2018 dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 9.5E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 9.5E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 9.5E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1125 b9eec5a7c1874a4921269a7ffe813578 246 Gene3D G3DSA:3.40.50.720 1 246 1.4E-83 T 11-10-2018 dqs_3538 94f7f52d044bb531c27a127bbf5abf48 60 ProSitePatterns PS00634 Ribosomal protein L30 signature. 24 56 - T 11-10-2018 IPR018038 Ribosomal protein L30, conserved site dqs_3538 94f7f52d044bb531c27a127bbf5abf48 60 PIRSF PIRSF002211 1 60 4.1E-28 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3538 94f7f52d044bb531c27a127bbf5abf48 60 Pfam PF00327 Ribosomal protein L30p/L7e 6 56 5.0E-19 T 11-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain dqs_3538 94f7f52d044bb531c27a127bbf5abf48 60 Gene3D G3DSA:3.30.1390.20 2 59 1.8E-25 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily dqs_3538 94f7f52d044bb531c27a127bbf5abf48 60 SUPERFAMILY SSF55129 4 59 6.8E-21 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily dqs_3538 94f7f52d044bb531c27a127bbf5abf48 60 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 3 60 21.298 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3538 94f7f52d044bb531c27a127bbf5abf48 60 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 6 59 1.9E-25 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 Gene3D G3DSA:1.25.40.20 70 269 1.2E-40 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 Pfam PF12796 Ankyrin repeats (3 copies) 98 159 4.1E-7 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 Pfam PF13857 Ankyrin repeats (many copies) 184 238 1.5E-7 T 11-10-2018 dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 SUPERFAMILY SSF48403 100 262 1.22E-34 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 SMART SM00248 230 263 4500.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 SMART SM00248 128 157 0.0098 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 SMART SM00248 95 124 880.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 SMART SM00248 197 226 8.0E-4 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_3121 60da22ccf8291417058b5098a5cbd52b 273 SMART SM00248 161 193 76.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_0489 8aef2fdae1a16d32d63ad5d27f349795 189 Pfam PF04345 Chorismate lyase 23 181 8.5E-23 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 dqs_0489 8aef2fdae1a16d32d63ad5d27f349795 189 SUPERFAMILY SSF64288 10 181 2.62E-40 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily dqs_0489 8aef2fdae1a16d32d63ad5d27f349795 189 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 8 184 27.437 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 dqs_0489 8aef2fdae1a16d32d63ad5d27f349795 189 Gene3D G3DSA:3.40.1410.10 3 182 2.6E-45 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily dqs_0836 be2d80a13a863d01d62b9d5f12a8d1b0 85 Pfam PF00037 4Fe-4S binding domain 4 25 2.6E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_0836 be2d80a13a863d01d62b9d5f12a8d1b0 85 Gene3D G3DSA:3.30.70.20 2 81 8.3E-35 T 11-10-2018 dqs_0836 be2d80a13a863d01d62b9d5f12a8d1b0 85 SUPERFAMILY SSF54862 4 74 8.03E-20 T 11-10-2018 dqs_0836 be2d80a13a863d01d62b9d5f12a8d1b0 85 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_2879 888d6fd1b8155307efc8f0e5fff5af5e 179 Pfam PF07813 LTXXQ motif family protein 53 144 2.0E-14 T 11-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 SUPERFAMILY SSF53955 237 416 6.03E-34 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 298 326 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 Gene3D G3DSA:1.10.530.10 273 435 6.2E-30 T 11-10-2018 dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 Pfam PF01464 Transglycosylase SLT domain 281 391 4.0E-20 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 SUPERFAMILY SSF53850 33 254 6.44E-29 T 11-10-2018 dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 Gene3D G3DSA:3.40.190.10 116 211 3.7E-36 T 11-10-2018 dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 Gene3D G3DSA:3.40.190.10 31 247 3.7E-36 T 11-10-2018 dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 SMART SM00062 32 255 4.9E-12 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_1449 795d057cd8b9e7a9949554b0620dea8f 462 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 253 8.2E-21 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 11-10-2018 IPR014762 DNA mismatch repair, conserved site dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 SMART SM01340 205 323 5.4E-60 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 SMART SM00853 435 577 3.3E-54 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 2 617 27.664 T 11-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 SUPERFAMILY SSF55874 2 203 4.06E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 Gene3D G3DSA:3.30.565.10 2 203 2.5E-60 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 205 322 4.9E-37 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 125 2.4E-11 T 11-10-2018 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 Gene3D G3DSA:3.30.1370.100 477 572 2.4E-56 T 11-10-2018 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 Gene3D G3DSA:3.30.230.10 210 322 4.2E-37 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 3 303 2.3E-87 T 11-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 SUPERFAMILY SSF118116 431 619 5.36E-59 T 11-10-2018 IPR037198 MutL, C-terminal domain superfamily dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 Gene3D G3DSA:2.30.42.20 437 614 2.4E-56 T 11-10-2018 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 Pfam PF08676 MutL C terminal dimerisation domain 431 577 7.3E-47 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 dqs_3258 ffecd566b76dc09b908e72f82f32493f 621 SUPERFAMILY SSF54211 192 323 4.17E-37 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 Gene3D G3DSA:3.30.230.10 4 162 2.7E-51 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 SUPERFAMILY SSF54211 11 161 1.37E-42 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 PIRSF PIRSF010376 7 280 2.2E-84 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 11 277 1.1E-76 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 Pfam PF00288 GHMP kinases N terminal domain 90 147 3.2E-9 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 8 274 31.683 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 SUPERFAMILY SSF55060 164 279 3.21E-32 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 Gene3D G3DSA:3.30.70.890 164 281 1.9E-30 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily dqs_0831 65a9014e117b7d7e55e49b08a49d2e7a 282 Pfam PF08544 GHMP kinases C terminal 218 257 5.0E-5 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain dqs_0328 eee804b18a90874c25e1eef7090382b7 91 SMART SM00411 1 90 1.3E-40 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_0328 eee804b18a90874c25e1eef7090382b7 91 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 dqs_0328 eee804b18a90874c25e1eef7090382b7 91 SUPERFAMILY SSF47729 1 90 3.68E-30 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 dqs_0328 eee804b18a90874c25e1eef7090382b7 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.4E-31 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_0328 eee804b18a90874c25e1eef7090382b7 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.6E-15 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_0328 eee804b18a90874c25e1eef7090382b7 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.6E-15 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_0328 eee804b18a90874c25e1eef7090382b7 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.6E-15 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_0328 eee804b18a90874c25e1eef7090382b7 91 Gene3D G3DSA:4.10.520.10 1 91 3.9E-34 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 Pfam PF08386 TAP-like protein 185 267 7.5E-7 T 11-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 PRINTS PR00412 Epoxide hydrolase signature 50 65 2.0E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 PRINTS PR00412 Epoxide hydrolase signature 93 106 2.0E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 PRINTS PR00412 Epoxide hydrolase signature 243 265 2.0E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 PRINTS PR00412 Epoxide hydrolase signature 107 120 2.0E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 SUPERFAMILY SSF53474 4 267 1.89E-54 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 Gene3D G3DSA:3.40.50.1820 5 269 3.0E-57 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 5.7E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 208 222 5.7E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 5.7E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 5.7E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1545 253b6e19041b702d2b4c20ece4df82f7 269 Pfam PF00561 alpha/beta hydrolase fold 24 141 8.2E-24 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2399 99cbee1139fb16290cf7f41c67c36caa 146 SUPERFAMILY SSF141322 75 145 1.1E-6 T 11-10-2018 dqs_2399 99cbee1139fb16290cf7f41c67c36caa 146 Pfam PF01957 NfeD-like C-terminal, partner-binding 7 145 4.2E-14 T 11-10-2018 IPR002810 NfeD-like, C-terminal domain dqs_2399 99cbee1139fb16290cf7f41c67c36caa 146 Gene3D G3DSA:2.40.50.140 79 146 1.5E-6 T 11-10-2018 dqs_0560 39fe0d244cd4d960b71d1199eef0bc1c 282 Gene3D G3DSA:2.160.10.10 83 201 5.2E-38 T 11-10-2018 dqs_0560 39fe0d244cd4d960b71d1199eef0bc1c 282 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 124 1.7E-4 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_0560 39fe0d244cd4d960b71d1199eef0bc1c 282 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 3.2E-6 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_0560 39fe0d244cd4d960b71d1199eef0bc1c 282 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 22 182 4.6E-74 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 dqs_0560 39fe0d244cd4d960b71d1199eef0bc1c 282 SUPERFAMILY SSF51161 17 186 4.16E-55 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_0560 39fe0d244cd4d960b71d1199eef0bc1c 282 PIRSF PIRSF000441 15 245 5.4E-90 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 dqs_0560 39fe0d244cd4d960b71d1199eef0bc1c 282 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 142 170 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 dqs_0560 39fe0d244cd4d960b71d1199eef0bc1c 282 Gene3D G3DSA:1.10.3130.10 7 82 6.7E-22 T 11-10-2018 dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 Gene3D G3DSA:1.10.10.10 1 86 1.0E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 Gene3D G3DSA:3.40.190.10 88 290 4.8E-62 T 11-10-2018 dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 SUPERFAMILY SSF46785 2 83 1.57E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.1E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 SUPERFAMILY SSF53850 88 291 3.8E-40 T 11-10-2018 dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 Gene3D G3DSA:3.40.190.10 169 265 4.8E-62 T 11-10-2018 dqs_1705 c9665d0bb0bf4cdff894d3eaeeca8e29 294 Pfam PF03466 LysR substrate binding domain 94 291 5.6E-29 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 5 276 7.0E-139 T 11-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 ProSitePatterns PS00692 NifH/frxC family signature 2. 127 140 - T 11-10-2018 IPR030655 NifH/chlL conserved site dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 Gene3D G3DSA:3.40.50.300 3 278 7.3E-75 T 11-10-2018 dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 ProSitePatterns PS00746 NifH/frxC family signature 1. 89 101 - T 11-10-2018 IPR030655 NifH/chlL conserved site dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 5 279 1.3E-142 T 11-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 PRINTS PR00091 Nitrogenase component II signature 10 23 9.0E-38 T 11-10-2018 dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 PRINTS PR00091 Nitrogenase component II signature 32 47 9.0E-38 T 11-10-2018 dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 PRINTS PR00091 Nitrogenase component II signature 87 101 9.0E-38 T 11-10-2018 dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 PRINTS PR00091 Nitrogenase component II signature 126 141 9.0E-38 T 11-10-2018 dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 Hamap MF_00533 Nitrogenase iron protein [nifH]. 4 277 52.383 T 11-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 SUPERFAMILY SSF52540 7 281 1.38E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0548 0e5933d6b48e4950b6520fcb6295987b 297 PIRSF PIRSF000363 3 279 2.1E-125 T 11-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 dqs_2239 8e986828e6b243ce89cc366a536de040 940 SUPERFAMILY SSF52540 434 607 2.0E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2239 8e986828e6b243ce89cc366a536de040 940 ProSitePatterns PS01176 Initiation factor 2 signature. 891 913 - T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 dqs_2239 8e986828e6b243ce89cc366a536de040 940 SUPERFAMILY SSF46955 3 51 1.83E-10 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_2239 8e986828e6b243ce89cc366a536de040 940 Gene3D G3DSA:3.40.50.300 437 611 1.3E-69 T 11-10-2018 dqs_2239 8e986828e6b243ce89cc366a536de040 940 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 60 98 1.1E-14 T 11-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial dqs_2239 8e986828e6b243ce89cc366a536de040 940 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 444 599 1.2E-31 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_2239 8e986828e6b243ce89cc366a536de040 940 SUPERFAMILY SSF50447 842 938 5.3E-34 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_2239 8e986828e6b243ce89cc366a536de040 940 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 5.6E-8 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal dqs_2239 8e986828e6b243ce89cc366a536de040 940 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 363 414 1.9E-15 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal dqs_2239 8e986828e6b243ce89cc366a536de040 940 Pfam PF11987 Translation-initiation factor 2 725 830 8.3E-39 T 11-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 dqs_2239 8e986828e6b243ce89cc366a536de040 940 Gene3D G3DSA:2.40.30.10 612 730 2.6E-38 T 11-10-2018 dqs_2239 8e986828e6b243ce89cc366a536de040 940 Gene3D G3DSA:3.40.50.10050 734 841 1.0E-38 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily dqs_2239 8e986828e6b243ce89cc366a536de040 940 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 938 17.544 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 dqs_2239 8e986828e6b243ce89cc366a536de040 940 Pfam PF00009 Elongation factor Tu GTP binding domain 445 601 4.4E-34 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_2239 8e986828e6b243ce89cc366a536de040 940 SUPERFAMILY SSF50447 613 695 1.68E-25 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_2239 8e986828e6b243ce89cc366a536de040 940 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 358 940 3.7E-261 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 dqs_2239 8e986828e6b243ce89cc366a536de040 940 Gene3D G3DSA:2.40.30.10 842 939 1.3E-33 T 11-10-2018 dqs_2239 8e986828e6b243ce89cc366a536de040 940 SUPERFAMILY SSF52156 718 847 1.96E-38 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily dqs_0108 5bb3f50eb7e7616113880e1739fb3cde 342 SUPERFAMILY SSF54106 34 82 1.31E-6 T 11-10-2018 dqs_0108 5bb3f50eb7e7616113880e1739fb3cde 342 SMART SM00257 34 83 1.4E-4 T 11-10-2018 IPR018392 LysM domain dqs_0108 5bb3f50eb7e7616113880e1739fb3cde 342 Gene3D G3DSA:3.10.350.10 33 80 2.4E-14 T 11-10-2018 IPR036779 LysM domain superfamily dqs_0108 5bb3f50eb7e7616113880e1739fb3cde 342 Pfam PF01476 LysM domain 35 81 1.4E-12 T 11-10-2018 IPR018392 LysM domain dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 SUPERFAMILY SSF51735 1 194 1.31E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 7.4E-134 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 5.1E-32 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 Gene3D G3DSA:3.40.50.720 1 202 2.0E-79 T 11-10-2018 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 SMART SM00984 320 424 4.2E-54 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 Gene3D G3DSA:1.20.5.100 203 234 7.7E-19 T 11-10-2018 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 187 2.5E-61 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 Gene3D G3DSA:3.40.50.720 235 440 1.7E-80 T 11-10-2018 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 SUPERFAMILY SSF48179 204 301 3.57E-32 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 3.3E-37 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 PIRSF PIRSF000124 1 439 8.8E-147 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 SUPERFAMILY SSF52413 305 435 2.75E-39 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 dqs_1184 76d6101a7d5b1398f9b20d90b9a67239 440 PIRSF PIRSF500134 1 440 1.2E-186 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 dqs_1046 ab8efec50d1456cbb1be29b8f14d5180 264 Gene3D G3DSA:3.40.50.300 1 254 9.5E-55 T 11-10-2018 dqs_1046 ab8efec50d1456cbb1be29b8f14d5180 264 Pfam PF00005 ABC transporter 22 177 6.0E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1046 ab8efec50d1456cbb1be29b8f14d5180 264 SUPERFAMILY SSF52540 1 232 8.95E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1046 ab8efec50d1456cbb1be29b8f14d5180 264 SMART SM00382 31 226 1.3E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1046 ab8efec50d1456cbb1be29b8f14d5180 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0813 f3deb508ecbb3be6b352ce622badd1a2 392 Gene3D G3DSA:3.30.70.1350 222 304 8.6E-22 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 dqs_0813 f3deb508ecbb3be6b352ce622badd1a2 392 Gene3D G3DSA:1.20.1510.10 22 221 3.6E-55 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily dqs_0813 f3deb508ecbb3be6b352ce622badd1a2 392 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 304 5.7E-66 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 dqs_0813 f3deb508ecbb3be6b352ce622badd1a2 392 Pfam PF01545 Cation efflux family 28 220 1.7E-37 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 dqs_0813 f3deb508ecbb3be6b352ce622badd1a2 392 SUPERFAMILY SSF161111 23 222 2.75E-46 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily dqs_0813 f3deb508ecbb3be6b352ce622badd1a2 392 SUPERFAMILY SSF160240 224 304 1.28E-20 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 dqs_0813 f3deb508ecbb3be6b352ce622badd1a2 392 Pfam PF16916 Dimerisation domain of Zinc Transporter 225 303 3.3E-24 T 11-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain dqs_3643 d70af6b6c1f085e9184edfafbf58a22f 102 SUPERFAMILY SSF46626 28 101 2.95E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3643 d70af6b6c1f085e9184edfafbf58a22f 102 Gene3D G3DSA:1.10.760.10 22 102 1.5E-34 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3643 d70af6b6c1f085e9184edfafbf58a22f 102 PRINTS PR00606 Class ID cytochrome C signature 90 100 7.5E-26 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3643 d70af6b6c1f085e9184edfafbf58a22f 102 PRINTS PR00606 Class ID cytochrome C signature 63 76 7.5E-26 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3643 d70af6b6c1f085e9184edfafbf58a22f 102 PRINTS PR00606 Class ID cytochrome C signature 78 88 7.5E-26 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3643 d70af6b6c1f085e9184edfafbf58a22f 102 PRINTS PR00606 Class ID cytochrome C signature 40 53 7.5E-26 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3643 d70af6b6c1f085e9184edfafbf58a22f 102 PRINTS PR00606 Class ID cytochrome C signature 25 38 7.5E-26 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3643 d70af6b6c1f085e9184edfafbf58a22f 102 Pfam PF00034 Cytochrome c 25 102 8.6E-7 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1453 e99c906db4848da73e6031782cc617ed 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 6.3E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1453 e99c906db4848da73e6031782cc617ed 311 Gene3D G3DSA:3.40.190.10 167 267 1.8E-91 T 11-10-2018 dqs_1453 e99c906db4848da73e6031782cc617ed 311 SUPERFAMILY SSF53850 91 298 1.74E-43 T 11-10-2018 dqs_1453 e99c906db4848da73e6031782cc617ed 311 Pfam PF03466 LysR substrate binding domain 89 292 6.7E-44 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1453 e99c906db4848da73e6031782cc617ed 311 Gene3D G3DSA:1.10.10.10 1 86 8.5E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1453 e99c906db4848da73e6031782cc617ed 311 Gene3D G3DSA:3.40.190.10 91 303 1.8E-91 T 11-10-2018 dqs_1453 e99c906db4848da73e6031782cc617ed 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 8.0E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1453 e99c906db4848da73e6031782cc617ed 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 8.0E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1453 e99c906db4848da73e6031782cc617ed 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 8.0E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1453 e99c906db4848da73e6031782cc617ed 311 SUPERFAMILY SSF46785 12 112 1.48E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_4100 5e1558050918eec7eabf7783304c1253 1064 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 7 1009 2.2E-151 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_4100 5e1558050918eec7eabf7783304c1253 1064 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 300 727 2.6E-139 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_4100 5e1558050918eec7eabf7783304c1253 1064 SUPERFAMILY SSF89550 6 218 1.2E-8 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 dqs_4100 5e1558050918eec7eabf7783304c1253 1064 Pfam PF02811 PHP domain 8 150 7.2E-12 T 11-10-2018 IPR004013 PHP domain GO:0003824 dqs_4100 5e1558050918eec7eabf7783304c1253 1064 Pfam PF14579 Helix-hairpin-helix motif 801 896 4.5E-23 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_4100 5e1558050918eec7eabf7783304c1253 1064 Gene3D G3DSA:3.20.20.140 1 278 1.2E-49 T 11-10-2018 dqs_4100 5e1558050918eec7eabf7783304c1253 1064 SMART SM00481 7 99 5.8E-8 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal dqs_4100 5e1558050918eec7eabf7783304c1253 1064 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 6 1064 13.724 T 11-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_4100 5e1558050918eec7eabf7783304c1253 1064 Pfam PF01336 OB-fold nucleic acid binding domain 974 1046 1.7E-6 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 dqs_2487 a2e821662da4ac183c711ac7fe0f0cee 497 Pfam PF01425 Amidase 28 477 1.6E-97 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2487 a2e821662da4ac183c711ac7fe0f0cee 497 PIRSF PIRSF001221 451 489 0.0053 T 11-10-2018 dqs_2487 a2e821662da4ac183c711ac7fe0f0cee 497 PIRSF PIRSF001221 3 411 2.2E-40 T 11-10-2018 dqs_2487 a2e821662da4ac183c711ac7fe0f0cee 497 SUPERFAMILY SSF75304 4 487 1.3E-118 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2487 a2e821662da4ac183c711ac7fe0f0cee 497 Gene3D G3DSA:3.90.1300.10 2 489 1.6E-121 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2700 46ff3e8cddd7e6a6b0eb714be0a4d036 454 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 dqs_2700 46ff3e8cddd7e6a6b0eb714be0a4d036 454 Gene3D G3DSA:1.20.1250.20 19 441 3.0E-63 T 11-10-2018 dqs_2700 46ff3e8cddd7e6a6b0eb714be0a4d036 454 ProSitePatterns PS00216 Sugar transport proteins signature 1. 79 95 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 dqs_2700 46ff3e8cddd7e6a6b0eb714be0a4d036 454 Pfam PF07690 Major Facilitator Superfamily 30 398 1.2E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_2700 46ff3e8cddd7e6a6b0eb714be0a4d036 454 SUPERFAMILY SSF103473 8 433 6.02E-75 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 Gene3D G3DSA:3.40.50.720 5 286 7.6E-123 T 11-10-2018 dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 PIRSF PIRSF015689 1 297 2.9E-132 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 SUPERFAMILY SSF51735 1 154 7.57E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 3 292 7.3E-143 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 116 1.0E-9 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 306 150.154 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 SMART SM00859 5 120 6.3E-5 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 SUPERFAMILY SSF55347 130 268 2.75E-60 T 11-10-2018 dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 130 267 4.8E-65 T 11-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2128 9f965bb7b0677550298a0343a0fa8f1c 306 Gene3D G3DSA:3.30.360.10 130 267 7.6E-123 T 11-10-2018 dqs_0107 acd2af8399a90f70c10307bb368f8bf8 372 Gene3D G3DSA:3.40.50.450 3 292 1.6E-106 T 11-10-2018 dqs_0107 acd2af8399a90f70c10307bb368f8bf8 372 Gene3D G3DSA:1.10.10.10 298 370 1.0E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0107 acd2af8399a90f70c10307bb368f8bf8 372 SUPERFAMILY SSF102405 82 291 6.56E-45 T 11-10-2018 dqs_0107 acd2af8399a90f70c10307bb368f8bf8 372 Pfam PF02481 DNA recombination-mediator protein A 74 281 3.9E-75 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 dqs_0107 acd2af8399a90f70c10307bb368f8bf8 372 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 71 290 4.3E-75 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 dqs_1748 a03bf486d095ab929143f8c0668de0ac 321 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 321 70.273 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 dqs_1748 a03bf486d095ab929143f8c0668de0ac 321 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 3 320 1.2E-123 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 dqs_1748 a03bf486d095ab929143f8c0668de0ac 321 SUPERFAMILY SSF53901 4 319 1.44E-73 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_1748 a03bf486d095ab929143f8c0668de0ac 321 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 109 186 9.1E-35 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 dqs_1748 a03bf486d095ab929143f8c0668de0ac 321 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 232 320 1.0E-36 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 dqs_1748 a03bf486d095ab929143f8c0668de0ac 321 Gene3D G3DSA:3.40.47.10 1 321 6.9E-132 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 Gene3D G3DSA:3.30.70.3270 371 510 6.0E-11 T 11-10-2018 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 Gene3D G3DSA:3.40.50.11540 145 295 2.1E-16 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 519 166.872 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 422 433 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 SUPERFAMILY SSF142019 98 305 8.24E-60 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 140 286 1.0E-53 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 SUPERFAMILY SSF46548 338 451 4.19E-18 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 Pfam PF13375 RnfC Barrel sandwich hybrid domain 20 116 2.3E-31 T 11-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 19 451 1.7E-167 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 Pfam PF10531 SLBB domain 298 346 4.5E-15 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0525 a5600a6958c926b524ce2bb6a6e0566a 519 Pfam PF12838 4Fe-4S dicluster domain 383 435 2.9E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 529 1023 5.7E-204 T 11-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 Pfam PF00171 Aldehyde dehydrogenase family 582 1023 1.2E-104 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 SUPERFAMILY SSF53720 569 1024 1.06E-114 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 SUPERFAMILY SSF51730 186 536 1.53E-116 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 PIRSF PIRSF000197 2 1221 0.0 T 11-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 828 839 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 Gene3D G3DSA:3.20.20.220 12 106 6.6E-7 T 11-10-2018 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 Gene3D G3DSA:3.20.20.220 140 528 1.2E-141 T 11-10-2018 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 SUPERFAMILY SSF81935 12 185 1.1E-58 T 11-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 Gene3D G3DSA:3.40.309.10 803 995 1.8E-135 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 72 183 2.1E-46 T 11-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 Gene3D G3DSA:3.40.605.10 576 1022 1.8E-135 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_3904 a4e2f09b94c3f08d907ce61b06cce7b4 1221 Pfam PF01619 Proline dehydrogenase 194 493 7.7E-96 T 11-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 dqs_3876 beff641c0b54297aded4c33852bf834f 218 SUPERFAMILY SSF56349 2 212 9.42E-43 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 dqs_3876 beff641c0b54297aded4c33852bf834f 218 Pfam PF00589 Phage integrase family 5 204 6.9E-45 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 dqs_3876 beff641c0b54297aded4c33852bf834f 218 TIGRFAM TIGR02249 integrase_gron: integron integrase 1 218 1.2E-98 T 11-10-2018 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 dqs_3876 beff641c0b54297aded4c33852bf834f 218 Gene3D G3DSA:1.10.443.10 1 207 5.0E-63 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 Gene3D G3DSA:2.70.150.10 28 237 1.2E-290 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 613 733 3.6E-35 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 93 355 7.3E-43 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 Pfam PF00702 haloacid dehalogenase-like hydrolase 332 656 1.2E-20 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 SMART SM00831 13 87 2.3E-30 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 Pfam PF00689 Cation transporting ATPase, C-terminus 727 899 2.0E-43 T 11-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 498 516 1.7E-17 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 614 630 1.7E-17 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 642 658 1.7E-17 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 674 699 1.7E-17 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 Pfam PF00122 E1-E2 ATPase 122 315 1.2E-53 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 SUPERFAMILY SSF81665 15 904 7.32E-124 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 Gene3D G3DSA:1.20.1110.10 65 897 1.2E-290 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 SUPERFAMILY SSF56784 333 747 4.21E-63 T 11-10-2018 IPR036412 HAD-like superfamily dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 337 343 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 SUPERFAMILY SSF81660 342 545 2.78E-48 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 Gene3D G3DSA:3.40.50.1000 332 687 1.2E-290 T 11-10-2018 IPR023214 HAD superfamily dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 SUPERFAMILY SSF81653 124 233 1.01E-30 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 Pfam PF00690 Cation transporter/ATPase, N-terminus 17 81 3.5E-16 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 Gene3D G3DSA:3.40.1110.10 345 548 1.2E-290 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 642 661 2.6E-40 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 563 573 2.6E-40 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 335 349 2.6E-40 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 666 678 2.6E-40 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 541 552 2.6E-40 T 11-10-2018 dqs_3281 60ce26c15ae3029c7df5845d3e0e1334 916 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 172 186 2.6E-40 T 11-10-2018 dqs_0970 5c99d675f411ebdc3074df353c7d9646 173 Gene3D G3DSA:2.60.200.20 28 139 3.5E-27 T 11-10-2018 dqs_0970 5c99d675f411ebdc3074df353c7d9646 173 Pfam PF00498 FHA domain 66 128 8.1E-17 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_0970 5c99d675f411ebdc3074df353c7d9646 173 SUPERFAMILY SSF49879 44 143 1.78E-25 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 dqs_0970 5c99d675f411ebdc3074df353c7d9646 173 SMART SM00240 64 114 1.4E-9 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00086 368 410 1.2E-8 T 11-10-2018 IPR001610 PAC motif dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00086 494 537 28.0 T 11-10-2018 IPR001610 PAC motif dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00073 1105 1200 0.0011 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SUPERFAMILY SSF47226 1056 1191 8.64E-15 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00388 557 622 6.7E-27 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 669 786 2.7E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Gene3D G3DSA:1.10.287.130 537 620 6.9E-30 T 11-10-2018 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Gene3D G3DSA:3.30.450.20 423 536 2.5E-22 T 11-10-2018 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SUPERFAMILY SSF47384 541 623 5.49E-23 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 PRINTS PR00344 Bacterial sensor protein C-terminal signature 730 740 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 PRINTS PR00344 Bacterial sensor protein C-terminal signature 771 784 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 PRINTS PR00344 Bacterial sensor protein C-terminal signature 712 726 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 PRINTS PR00344 Bacterial sensor protein C-terminal signature 747 765 1.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Gene3D G3DSA:3.40.50.2300 953 1077 2.9E-40 T 11-10-2018 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Gene3D G3DSA:1.20.120.160 1096 1202 2.2E-10 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SUPERFAMILY SSF52172 957 1078 1.27E-37 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Pfam PF01627 Hpt domain 1120 1194 1.2E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SUPERFAMILY SSF55785 308 410 1.22E-31 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Pfam PF00072 Response regulator receiver domain 810 924 3.5E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Pfam PF00072 Response regulator receiver domain 961 1071 1.9E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Gene3D G3DSA:3.30.450.20 302 422 3.3E-37 T 11-10-2018 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SUPERFAMILY SSF55874 611 783 4.32E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SUPERFAMILY SSF52172 805 930 8.4E-29 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00448 959 1073 3.1E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00448 807 925 2.4E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Pfam PF13426 PAS domain 307 409 4.1E-18 T 11-10-2018 IPR000014 PAS domain dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Gene3D G3DSA:3.40.50.12740 809 952 5.6E-31 T 11-10-2018 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Pfam PF00512 His Kinase A (phospho-acceptor) domain 557 622 1.3E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00091 296 365 1.3E-4 T 11-10-2018 IPR000014 PAS domain dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00091 422 489 5.3E-8 T 11-10-2018 IPR000014 PAS domain dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Pfam PF08448 PAS fold 428 539 5.4E-15 T 11-10-2018 IPR013656 PAS fold-4 dqs_3830 0d5a0633f850646690d126c6485ed937 1209 Gene3D G3DSA:3.30.565.10 621 790 1.2E-52 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SMART SM00387 669 787 8.3E-42 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3830 0d5a0633f850646690d126c6485ed937 1209 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 421 544 3.0E-19 T 11-10-2018 IPR000014 PAS domain dqs_3830 0d5a0633f850646690d126c6485ed937 1209 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 309 417 1.1E-20 T 11-10-2018 IPR000014 PAS domain dqs_3830 0d5a0633f850646690d126c6485ed937 1209 SUPERFAMILY SSF55785 407 535 1.56E-23 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 Gene3D G3DSA:3.30.470.20 118 297 8.0E-106 T 11-10-2018 dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 SUPERFAMILY SSF56059 127 313 7.28E-57 T 11-10-2018 dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 Gene3D G3DSA:3.30.1490.20 140 204 8.0E-106 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 127 299 2.1E-70 T 11-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 TIGRFAM TIGR01380 glut_syn: glutathione synthase 5 314 2.1E-123 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 5 123 1.8E-42 T 11-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 SUPERFAMILY SSF52440 5 125 5.18E-41 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 Gene3D G3DSA:3.40.50.20 10 117 8.0E-106 T 11-10-2018 dqs_3906 9ad04074d19e074be7e43bf34171cc54 318 Hamap MF_00162 Glutathione synthetase [gshB]. 1 318 151.227 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 dqs_1360 0436d30b4b86cfb57da2511293c1dfb2 352 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1360 0436d30b4b86cfb57da2511293c1dfb2 352 Pfam PF13484 4Fe-4S double cluster binding domain 192 256 3.4E-19 T 11-10-2018 dqs_1360 0436d30b4b86cfb57da2511293c1dfb2 352 Pfam PF08331 Domain of unknown function (DUF1730) 64 141 1.6E-25 T 11-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 dqs_1360 0436d30b4b86cfb57da2511293c1dfb2 352 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 16 349 1.1E-147 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 dqs_1360 0436d30b4b86cfb57da2511293c1dfb2 352 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 9 315 47.878 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 dqs_1360 0436d30b4b86cfb57da2511293c1dfb2 352 SUPERFAMILY SSF54862 169 321 2.85E-17 T 11-10-2018 dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Pfam PF08448 PAS fold 610 722 4.8E-7 T 11-10-2018 IPR013656 PAS fold-4 dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SUPERFAMILY SSF55785 589 719 1.1E-15 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Pfam PF13426 PAS domain 488 590 6.4E-16 T 11-10-2018 IPR000014 PAS domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Pfam PF00990 Diguanylate cyclase, GGDEF domain 732 889 1.6E-45 T 11-10-2018 IPR000160 GGDEF domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Gene3D G3DSA:3.30.450.20 472 602 4.2E-37 T 11-10-2018 dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Pfam PF08447 PAS fold 376 462 5.6E-14 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SUPERFAMILY SSF55073 737 895 1.1E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SMART SM00267 721 893 1.8E-65 T 11-10-2018 IPR000160 GGDEF domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Gene3D G3DSA:3.30.450.20 346 465 2.4E-26 T 11-10-2018 dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Gene3D G3DSA:3.30.70.270 730 898 1.8E-59 T 11-10-2018 dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SMART SM00091 477 544 3.5E-6 T 11-10-2018 IPR000014 PAS domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SMART SM00091 604 674 0.0039 T 11-10-2018 IPR000014 PAS domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SMART SM00091 353 421 5.3 T 11-10-2018 IPR000014 PAS domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 728 893 5.7E-51 T 11-10-2018 IPR000160 GGDEF domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Gene3D G3DSA:3.30.450.20 47 165 1.5E-7 T 11-10-2018 dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 Gene3D G3DSA:3.30.450.20 603 729 1.8E-18 T 11-10-2018 dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SUPERFAMILY SSF55785 341 466 2.44E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 476 599 1.2E-17 T 11-10-2018 IPR000014 PAS domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 349 473 1.3E-6 T 11-10-2018 IPR000014 PAS domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 602 728 3.0E-6 T 11-10-2018 IPR000014 PAS domain dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SMART SM00086 550 592 1.9E-9 T 11-10-2018 IPR001610 PAC motif dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SMART SM00086 427 469 0.044 T 11-10-2018 IPR001610 PAC motif dqs_0508 ce3ca956224d0c89fbbc09d5ba2196c0 901 SUPERFAMILY SSF55785 489 600 1.57E-24 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1389 12cface9ff839697cb852a8480ac39d0 380 Pfam PF02405 Permease MlaE 165 373 2.9E-68 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 dqs_1389 12cface9ff839697cb852a8480ac39d0 380 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 142 374 1.1E-66 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria dqs_3929 49a88ddebf760e19ba21ab64dfd29408 163 Pfam PF00583 Acetyltransferase (GNAT) family 55 144 2.2E-14 T 11-10-2018 IPR000182 GNAT domain dqs_3929 49a88ddebf760e19ba21ab64dfd29408 163 Gene3D G3DSA:3.40.630.30 5 151 9.4E-27 T 11-10-2018 dqs_3929 49a88ddebf760e19ba21ab64dfd29408 163 SUPERFAMILY SSF55729 12 162 1.03E-26 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_1752 ced4b9419855de8f6d95434146671c7a 411 PIRSF PIRSF000447 1 411 1.1E-182 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 dqs_1752 ced4b9419855de8f6d95434146671c7a 411 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 409 2.2E-193 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 dqs_1752 ced4b9419855de8f6d95434146671c7a 411 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 368 7.7E-33 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal dqs_1752 ced4b9419855de8f6d95434146671c7a 411 Gene3D G3DSA:3.40.47.10 257 400 7.4E-47 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_1752 ced4b9419855de8f6d95434146671c7a 411 SMART SM00825 Beta-ketoacyl synthase 6 411 4.3E-16 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain dqs_1752 ced4b9419855de8f6d95434146671c7a 411 SUPERFAMILY SSF53901 4 252 4.19E-81 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_1752 ced4b9419855de8f6d95434146671c7a 411 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site dqs_1752 ced4b9419855de8f6d95434146671c7a 411 Gene3D G3DSA:3.40.47.10 1 255 3.3E-97 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_1752 ced4b9419855de8f6d95434146671c7a 411 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 3.8E-63 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal dqs_1752 ced4b9419855de8f6d95434146671c7a 411 SUPERFAMILY SSF53901 214 410 1.66E-66 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2846 3ccae10e3b022cf4e64c9845ae19e417 259 Pfam PF07238 PilZ domain 129 246 6.0E-13 T 11-10-2018 IPR009875 PilZ domain GO:0035438 dqs_2846 3ccae10e3b022cf4e64c9845ae19e417 259 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 16 255 33.812 T 11-10-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 dqs_2846 3ccae10e3b022cf4e64c9845ae19e417 259 Pfam PF07317 Flagellar regulator YcgR 21 127 6.5E-30 T 11-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal dqs_2846 3ccae10e3b022cf4e64c9845ae19e417 259 Gene3D G3DSA:2.40.10.220 130 250 2.7E-28 T 11-10-2018 dqs_1319 075568b1fcbc5853a814f0bca53523b6 176 ProSitePatterns PS00855 Signal peptidases II signature. 109 121 - T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 dqs_1319 075568b1fcbc5853a814f0bca53523b6 176 TIGRFAM TIGR00077 lspA: signal peptidase II 18 163 1.8E-45 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 dqs_1319 075568b1fcbc5853a814f0bca53523b6 176 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 142 158 3.8E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 dqs_1319 075568b1fcbc5853a814f0bca53523b6 176 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 106 121 3.8E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 dqs_1319 075568b1fcbc5853a814f0bca53523b6 176 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 59 67 3.8E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 dqs_1319 075568b1fcbc5853a814f0bca53523b6 176 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 13 167 16.281 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 dqs_1319 075568b1fcbc5853a814f0bca53523b6 176 Pfam PF01252 Signal peptidase (SPase) II 22 161 2.3E-38 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 Pfam PF02503 Polyphosphate kinase middle domain 130 331 9.8E-64 T 11-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 SUPERFAMILY SSF56024 324 504 1.6E-58 T 11-10-2018 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 Gene3D G3DSA:3.30.870.10 326 509 3.2E-73 T 11-10-2018 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 SUPERFAMILY SSF56024 510 684 5.16E-67 T 11-10-2018 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 SUPERFAMILY SSF140356 12 116 4.84E-36 T 11-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 PIRSF PIRSF015589 2 692 7.6E-274 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 Gene3D G3DSA:3.30.1840.10 8 322 5.8E-105 T 11-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 15 685 8.1E-293 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 Gene3D G3DSA:3.30.870.10 510 689 3.8E-62 T 11-10-2018 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 Pfam PF13089 Polyphosphate kinase N-terminal domain 15 120 1.1E-35 T 11-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 SUPERFAMILY SSF143724 118 323 3.14E-67 T 11-10-2018 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 Hamap MF_00347 Polyphosphate kinase [ppk]. 12 691 27.984 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 dqs_1839 5feaad43a1c9a464720df973b60f36c1 693 Pfam PF13090 Polyphosphate kinase C-terminal domain 340 681 8.9E-149 T 11-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 dqs_1590 220805fa22b9345b3bd2e37cf0495afd 459 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 17 452 27.979 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 dqs_1590 220805fa22b9345b3bd2e37cf0495afd 459 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 21 365 1.2E-122 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 dqs_1590 220805fa22b9345b3bd2e37cf0495afd 459 Pfam PF02601 Exonuclease VII, large subunit 136 449 3.1E-91 T 11-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 dqs_1590 220805fa22b9345b3bd2e37cf0495afd 459 Pfam PF13742 OB-fold nucleic acid binding domain 20 112 2.0E-29 T 11-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 dqs_0191 c56074ffdd77f5f3d814b159754fc83a 93 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 5 93 23.039 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 dqs_0191 c56074ffdd77f5f3d814b159754fc83a 93 Gene3D G3DSA:3.30.70.260 7 93 6.0E-32 T 11-10-2018 dqs_0191 c56074ffdd77f5f3d814b159754fc83a 93 SUPERFAMILY SSF117991 9 93 1.57E-27 T 11-10-2018 IPR027471 YbeD-like domain superfamily dqs_0191 c56074ffdd77f5f3d814b159754fc83a 93 Pfam PF04359 Protein of unknown function (DUF493) 11 93 2.9E-33 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 dqs_0007 d980f34fa4420363cf146dd0a63ac435 248 Gene3D G3DSA:3.30.2010.10 137 230 7.7E-16 T 11-10-2018 dqs_0007 d980f34fa4420363cf146dd0a63ac435 248 Pfam PF01863 Protein of unknown function DUF45 24 228 2.1E-56 T 11-10-2018 IPR002725 Protein of unknown function DUF45 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 SUPERFAMILY SSF82693 147 319 2.46E-14 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 SUPERFAMILY SSF82693 43 128 2.2E-22 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Gene3D G3DSA:1.20.1640.10 512 1015 2.1E-254 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Gene3D G3DSA:3.30.70.1430 42 808 2.1E-254 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Gene3D G3DSA:3.30.70.1440 663 858 2.1E-254 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Pfam PF00873 AcrB/AcrD/AcrF family 5 1018 4.2E-244 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 SUPERFAMILY SSF82714 186 267 7.72E-15 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 SUPERFAMILY SSF82866 795 1021 4.05E-42 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 SUPERFAMILY SSF82866 294 500 6.15E-36 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1022 1.8E-227 T 11-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Gene3D G3DSA:3.30.2090.10 183 274 2.1E-254 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Gene3D G3DSA:1.20.1640.10 13 511 2.1E-254 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Gene3D G3DSA:3.30.70.1320 135 328 2.1E-254 T 11-10-2018 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 5.3E-33 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 PRINTS PR00702 Acriflavin resistance protein family signature 548 565 5.3E-33 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 5.3E-33 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 5.3E-33 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 5.3E-33 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 5.3E-33 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 5.3E-33 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Gene3D G3DSA:3.30.2090.10 714 800 2.1E-254 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 SUPERFAMILY SSF82714 713 796 1.2E-10 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0241 de45919bd483d20ac216c2496f14b9c9 1043 Gene3D G3DSA:3.30.70.1430 565 662 2.1E-254 T 11-10-2018 dqs_4052 31951b59698cce49c185ff5faee8eb68 476 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 39 - T 11-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 dqs_4052 31951b59698cce49c185ff5faee8eb68 476 Gene3D G3DSA:1.10.510.10 95 278 5.1E-44 T 11-10-2018 dqs_4052 31951b59698cce49c185ff5faee8eb68 476 SUPERFAMILY SSF56112 6 264 4.53E-71 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_4052 31951b59698cce49c185ff5faee8eb68 476 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 132 144 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 dqs_4052 31951b59698cce49c185ff5faee8eb68 476 SMART SM00220 10 271 1.2E-60 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_4052 31951b59698cce49c185ff5faee8eb68 476 Pfam PF00069 Protein kinase domain 10 217 2.0E-48 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_4052 31951b59698cce49c185ff5faee8eb68 476 Gene3D G3DSA:3.30.200.20 2 92 3.1E-30 T 11-10-2018 dqs_0714 0ebaa4c03cfc50f45c2644b510c5f98f 120 SUPERFAMILY SSF141371 4 118 2.16E-34 T 11-10-2018 dqs_0714 0ebaa4c03cfc50f45c2644b510c5f98f 120 Gene3D G3DSA:2.40.10.220 1 120 4.3E-39 T 11-10-2018 dqs_0714 0ebaa4c03cfc50f45c2644b510c5f98f 120 PIRSF PIRSF028141 1 119 2.1E-38 T 11-10-2018 IPR027021 Cyclic di-GMP binding protein, PA4608 type dqs_0714 0ebaa4c03cfc50f45c2644b510c5f98f 120 Pfam PF07238 PilZ domain 5 101 2.8E-14 T 11-10-2018 IPR009875 PilZ domain GO:0035438 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 PRINTS PR00344 Bacterial sensor protein C-terminal signature 632 646 2.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 679 2.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 PRINTS PR00344 Bacterial sensor protein C-terminal signature 650 660 2.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 SMART SM00388 483 555 6.7E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 Gene3D G3DSA:1.10.287.130 478 552 1.6E-11 T 11-10-2018 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 Gene3D G3DSA:1.20.1480.50 266 354 4.5E-10 T 11-10-2018 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 SUPERFAMILY SSF55874 556 697 3.14E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 SMART SM00387 593 701 6.5E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 SMART SM00304 299 351 7.0E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 SUPERFAMILY SSF47384 478 554 3.53E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 Pfam PF00672 HAMP domain 299 347 1.6E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 593 699 6.6E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 SUPERFAMILY SSF158472 299 348 9.68E-9 T 11-10-2018 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 SUPERFAMILY SSF55785 357 473 3.24E-10 T 11-10-2018 IPR035965 PAS domain superfamily dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 Gene3D G3DSA:3.30.450.20 355 477 5.9E-7 T 11-10-2018 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 Pfam PF00512 His Kinase A (phospho-acceptor) domain 486 553 1.4E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 Gene3D G3DSA:3.30.565.10 557 702 3.3E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_4126 1b915341df5d0f15ea95094156ef2e82 706 PIRSF PIRSF037532 1 704 3.1E-230 T 11-10-2018 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator dqs_0556 a8da77ee968253614ff3bd4ce02d9d32 285 Gene3D G3DSA:1.10.4030.30 42 249 1.7E-35 T 11-10-2018 dqs_0556 a8da77ee968253614ff3bd4ce02d9d32 285 Gene3D G3DSA:3.10.50.40 136 239 1.7E-35 T 11-10-2018 dqs_0556 a8da77ee968253614ff3bd4ce02d9d32 285 TIGRFAM TIGR02933 nifM_nitrog: nitrogen fixation protein NifM 6 274 1.7E-69 T 11-10-2018 IPR014282 Nitrogen fixation protein NifM dqs_0556 a8da77ee968253614ff3bd4ce02d9d32 285 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 177 197 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 dqs_0556 a8da77ee968253614ff3bd4ce02d9d32 285 SUPERFAMILY SSF109998 4 163 1.45E-11 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily dqs_0556 a8da77ee968253614ff3bd4ce02d9d32 285 SUPERFAMILY SSF54534 129 235 3.53E-25 T 11-10-2018 dqs_0556 a8da77ee968253614ff3bd4ce02d9d32 285 Pfam PF00639 PPIC-type PPIASE domain 142 236 1.5E-21 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 SUPERFAMILY SSF52540 487 717 6.48E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 Pfam PF00005 ABC transporter 510 659 6.7E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 Pfam PF00664 ABC transporter transmembrane region 182 441 5.2E-22 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 Gene3D G3DSA:3.90.70.10 23 149 1.6E-31 T 11-10-2018 dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 SUPERFAMILY SSF90123 166 476 1.83E-50 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 SMART SM00382 519 705 8.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 28 722 4.8E-301 T 11-10-2018 IPR017750 ATPase, type I secretion system dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 Gene3D G3DSA:1.20.1560.10 166 477 1.8E-51 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_0715 7ca2a57846fef9ba37aa31ba72c958e8 728 Gene3D G3DSA:3.40.50.300 484 723 6.8E-83 T 11-10-2018 dqs_2353 4ff64ebeae094767d1efdadaba0c4f38 208 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 201 2.3E-45 T 11-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 dqs_2353 4ff64ebeae094767d1efdadaba0c4f38 208 Gene3D G3DSA:1.10.1760.20 1 200 1.5E-32 T 11-10-2018 dqs_1760 8ff38ed6753c654c2aedb107d35fd9a4 85 SUPERFAMILY SSF52833 6 76 2.37E-14 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1760 8ff38ed6753c654c2aedb107d35fd9a4 85 Gene3D G3DSA:3.40.30.10 1 78 3.6E-19 T 11-10-2018 dqs_1760 8ff38ed6753c654c2aedb107d35fd9a4 85 Pfam PF05768 Glutaredoxin-like domain (DUF836) 7 76 1.5E-11 T 11-10-2018 IPR008554 Glutaredoxin-like dqs_0966 9279d9fe2f1e685adae245f4802704de 413 Gene3D G3DSA:3.60.70.12 12 279 6.4E-88 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 dqs_0966 9279d9fe2f1e685adae245f4802704de 413 SUPERFAMILY SSF56266 16 410 3.27E-134 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 dqs_0966 9279d9fe2f1e685adae245f4802704de 413 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 413 158.587 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 dqs_0966 9279d9fe2f1e685adae245f4802704de 413 Gene3D G3DSA:3.10.20.340 280 413 3.4E-41 T 11-10-2018 dqs_0966 9279d9fe2f1e685adae245f4802704de 413 Pfam PF01960 ArgJ family 22 413 6.6E-140 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 dqs_0966 9279d9fe2f1e685adae245f4802704de 413 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 16 413 1.0E-124 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 dqs_0966 9279d9fe2f1e685adae245f4802704de 413 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 24 411 3.0E-179 T 11-10-2018 dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 1.5E-13 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 91 99 1.5E-13 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 100 109 1.5E-13 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 139 7.8E-45 T 11-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 SUPERFAMILY SSF81330 12 135 1.83E-34 T 11-10-2018 IPR036019 Gated mechanosensitive channel dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 140 9.9E-44 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 11-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 140 24.365 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 dqs_3974 a370c934e4b31b3d13d4a39807515bc3 141 Gene3D G3DSA:1.10.1200.120 3 141 4.1E-42 T 11-10-2018 IPR036019 Gated mechanosensitive channel dqs_2442 201ff8c71634240556f6016c1780d9b7 592 Gene3D G3DSA:3.40.50.300 370 586 1.1E-18 T 11-10-2018 dqs_2442 201ff8c71634240556f6016c1780d9b7 592 Gene3D G3DSA:1.20.1560.10 26 353 2.5E-8 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_2442 201ff8c71634240556f6016c1780d9b7 592 SUPERFAMILY SSF52540 375 576 1.09E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2442 201ff8c71634240556f6016c1780d9b7 592 SUPERFAMILY SSF90123 35 351 2.62E-19 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_2442 201ff8c71634240556f6016c1780d9b7 592 Pfam PF06472 ABC transporter transmembrane region 2 15 272 1.3E-43 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 SUPERFAMILY SSF82282 8 402 5.36E-116 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Pfam PF00809 Pterin binding enzyme 363 600 8.4E-57 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 SUPERFAMILY SSF56507 912 1233 6.02E-125 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Gene3D G3DSA:1.10.1240.10 654 745 8.1E-37 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Gene3D G3DSA:3.20.20.20 343 648 5.1E-127 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 947 1219 2.5E-125 T 11-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 SUPERFAMILY SSF47644 656 747 8.63E-27 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Gene3D G3DSA:3.20.20.330 2 342 9.8E-127 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Gene3D G3DSA:1.10.288.10 946 1103 2.5E-135 T 11-10-2018 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Pfam PF02574 Homocysteine S-methyltransferase 18 328 4.6E-77 T 11-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Pfam PF02607 B12 binding domain 663 740 2.5E-25 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 SMART SM01018 661 748 4.9E-43 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Gene3D G3DSA:3.40.50.280 754 905 3.6E-55 T 11-10-2018 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 PIRSF PIRSF000381 2 1206 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Pfam PF02310 B12 binding domain 758 848 6.1E-20 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 SUPERFAMILY SSF52242 753 904 2.88E-47 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 Gene3D G3DSA:3.10.196.10 918 1233 2.5E-135 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 SUPERFAMILY SSF51717 359 626 3.92E-91 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3877 688dbce89944dfac0f65b78b37a3569a 1233 TIGRFAM TIGR02082 metH: methionine synthase 14 1203 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_1102 514b9add911c5da86bbb27964b3d62df 414 Pfam PF12838 4Fe-4S dicluster domain 24 89 3.3E-13 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_1102 514b9add911c5da86bbb27964b3d62df 414 Pfam PF02754 Cysteine-rich domain 307 390 1.6E-10 T 11-10-2018 IPR004017 Cysteine-rich domain dqs_1102 514b9add911c5da86bbb27964b3d62df 414 Pfam PF02754 Cysteine-rich domain 173 255 4.6E-8 T 11-10-2018 IPR004017 Cysteine-rich domain dqs_1102 514b9add911c5da86bbb27964b3d62df 414 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1102 514b9add911c5da86bbb27964b3d62df 414 PIRSF PIRSF000139 6 411 2.8E-107 T 11-10-2018 dqs_1102 514b9add911c5da86bbb27964b3d62df 414 SUPERFAMILY SSF54862 21 119 2.85E-21 T 11-10-2018 dqs_1102 514b9add911c5da86bbb27964b3d62df 414 Gene3D G3DSA:1.10.1060.10 2 107 7.7E-11 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_1541 91cf6c51dc6894e693485e0acc2f2792 285 SUPERFAMILY SSF109604 7 268 1.19E-61 T 11-10-2018 dqs_1541 91cf6c51dc6894e693485e0acc2f2792 285 Pfam PF08668 HDOD domain 14 204 1.5E-57 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_1541 91cf6c51dc6894e693485e0acc2f2792 285 Gene3D G3DSA:1.10.3210.10 2 273 4.7E-68 T 11-10-2018 dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 Pfam PF00128 Alpha amylase, catalytic domain 36 394 1.6E-68 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 SUPERFAMILY SSF51445 12 470 8.92E-123 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 Gene3D G3DSA:3.90.1200.10 832 1105 9.1E-59 T 11-10-2018 dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 Gene3D G3DSA:3.20.20.80 13 465 1.1E-214 T 11-10-2018 dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 13 558 1.1E-277 T 11-10-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622|MetaCyc: PWY-7900 dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 Pfam PF16657 Maltogenic Amylase, C-terminal domain 473 554 2.6E-24 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 SMART SM00642 21 420 1.8E-91 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 SUPERFAMILY SSF51011 475 558 2.32E-14 T 11-10-2018 dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 SUPERFAMILY SSF56112 869 1100 2.38E-11 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 Gene3D G3DSA:2.60.40.1180 473 568 2.9E-32 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 600 1100 4.7E-133 T 11-10-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain dqs_1877 3998792aa3c19f5c51c832c7855f4021 1106 Gene3D G3DSA:3.90.400.10 111 181 1.1E-214 T 11-10-2018 dqs_3460 d7e66da126f24bc12b520ac7d14efd3d 264 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 264 35.831 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 dqs_3460 d7e66da126f24bc12b520ac7d14efd3d 264 Gene3D G3DSA:3.20.20.70 1 264 1.3E-101 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3460 d7e66da126f24bc12b520ac7d14efd3d 264 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 261 1.3E-92 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 dqs_3460 d7e66da126f24bc12b520ac7d14efd3d 264 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 11-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 dqs_3460 d7e66da126f24bc12b520ac7d14efd3d 264 SUPERFAMILY SSF51366 12 263 2.59E-84 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 dqs_1870 d4d8c0505dec23b7c70881be8050c8bb 377 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 101 299 2.0E-22 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 dqs_1870 d4d8c0505dec23b7c70881be8050c8bb 377 Gene3D G3DSA:3.40.50.2000 187 363 1.4E-35 T 11-10-2018 dqs_1870 d4d8c0505dec23b7c70881be8050c8bb 377 SUPERFAMILY SSF53756 22 360 2.98E-62 T 11-10-2018 dqs_1870 d4d8c0505dec23b7c70881be8050c8bb 377 Gene3D G3DSA:3.40.50.2000 17 144 2.3E-14 T 11-10-2018 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.1E-18 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.1E-18 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.1E-18 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.1E-18 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 PIRSF PIRSF001535 1 581 2.6E-269 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 468 3.3E-46 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 580 40.953 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 SUPERFAMILY SSF52954 473 579 7.69E-31 T 11-10-2018 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 SUPERFAMILY SSF55826 218 399 2.09E-33 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 Pfam PF03129 Anticodon binding domain 484 575 1.1E-17 T 11-10-2018 IPR004154 Anticodon-binding dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 Pfam PF04073 Aminoacyl-tRNA editing domain 257 387 1.1E-28 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 SUPERFAMILY SSF55681 10 487 9.76E-104 T 11-10-2018 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 Gene3D G3DSA:3.90.960.10 240 398 1.2E-235 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 573 6.0E-226 T 11-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 Gene3D G3DSA:3.30.930.10 11 474 1.2E-235 T 11-10-2018 dqs_2900 7b77dad72bc9e26b9bac1c79dd786948 581 Gene3D G3DSA:3.40.50.800 5 562 1.2E-235 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 34 407 9.1E-130 T 11-10-2018 IPR026464 Nitrous oxide reductase family maturation protein NosD dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SUPERFAMILY SSF51126 28 393 1.51E-61 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 Pfam PF05048 Periplasmic copper-binding protein (NosD) 146 370 1.3E-59 T 11-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 Gene3D G3DSA:2.160.20.10 20 347 4.2E-28 T 11-10-2018 IPR012334 Pectin lyase fold dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 260 293 5.8E-7 T 11-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 274 316 6.3E-5 T 11-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 87 115 410.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 303 340 5100.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 258 279 67.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 169 190 3800.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 117 138 1400.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 235 257 530.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 280 301 650.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 191 212 1400.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00710 139 168 47.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00722 195 354 56.0 T 11-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain dqs_3241 deebba2fd0210809376e9b624dde2e3c 425 SMART SM00722 41 189 3.6E-7 T 11-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 Gene3D G3DSA:3.40.50.720 1 264 5.5E-58 T 11-10-2018 dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 187 0.0013 T 11-10-2018 dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 SUPERFAMILY SSF51735 4 255 3.04E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1910 1220c235cdc75b482e0863119f6fa4a2 334 Pfam PF00106 short chain dehydrogenase 5 191 4.3E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1250 46128bbb2bef7bf26c5008cc3f77d5f0 149 Pfam PF00692 dUTPase 18 147 6.7E-37 T 11-10-2018 IPR029054 dUTPase-like dqs_1250 46128bbb2bef7bf26c5008cc3f77d5f0 149 Gene3D G3DSA:2.70.40.10 1 149 5.1E-49 T 11-10-2018 IPR036157 dUTPase-like superfamily dqs_1250 46128bbb2bef7bf26c5008cc3f77d5f0 149 TIGRFAM TIGR00576 dut: dUTP diphosphatase 15 148 6.9E-46 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 dqs_1250 46128bbb2bef7bf26c5008cc3f77d5f0 149 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 148 32.644 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 dqs_1250 46128bbb2bef7bf26c5008cc3f77d5f0 149 SUPERFAMILY SSF51283 6 148 2.22E-50 T 11-10-2018 IPR036157 dUTPase-like superfamily dqs_1570 291f92a67508afa87e600e2f63b5b72d 107 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 10 91 8.0E-18 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 dqs_1570 291f92a67508afa87e600e2f63b5b72d 107 Gene3D G3DSA:1.10.4000.10 2 107 1.0E-33 T 11-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily dqs_1570 291f92a67508afa87e600e2f63b5b72d 107 SUPERFAMILY SSF63592 4 97 2.35E-28 T 11-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily dqs_1570 291f92a67508afa87e600e2f63b5b72d 107 Pfam PF05247 Flagellar transcriptional activator (FlhD) 3 101 3.3E-38 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 dqs_1570 291f92a67508afa87e600e2f63b5b72d 107 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 1 104 20.007 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 SUPERFAMILY SSF159127 1 69 6.54E-24 T 11-10-2018 IPR037254 HupF/HypC superfamily dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 11-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 68 1.6E-24 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 Gene3D G3DSA:2.40.50.970 1 72 2.4E-27 T 11-10-2018 IPR037254 HupF/HypC superfamily dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 Pfam PF01455 HupF/HypC family 1 66 2.5E-27 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 39 55 1.4E-20 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.4E-20 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 57 69 1.4E-20 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3954 6d174fb84fccffe9f53408a78e6ee0d7 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 18 34 1.4E-20 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_2760 d3b4315da9dd845535dc18398bbc1cd6 125 Gene3D G3DSA:2.60.120.10 2 121 4.2E-31 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_2760 d3b4315da9dd845535dc18398bbc1cd6 125 PRINTS PR00655 Auxin binding protein signature 18 38 9.5E-9 T 11-10-2018 IPR000526 Auxin-binding protein GO:0010011 dqs_2760 d3b4315da9dd845535dc18398bbc1cd6 125 PRINTS PR00655 Auxin binding protein signature 41 65 9.5E-9 T 11-10-2018 IPR000526 Auxin-binding protein GO:0010011 dqs_2760 d3b4315da9dd845535dc18398bbc1cd6 125 Pfam PF02041 Auxin binding protein 9 113 4.1E-17 T 11-10-2018 IPR000526 Auxin-binding protein GO:0010011 dqs_2760 d3b4315da9dd845535dc18398bbc1cd6 125 SUPERFAMILY SSF51182 6 105 4.58E-22 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3025 628c7b7e0ad183264cb0350b56602998 330 SUPERFAMILY SSF53659 5 324 3.04E-105 T 11-10-2018 dqs_3025 628c7b7e0ad183264cb0350b56602998 330 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 33 318 3.6E-105 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 dqs_3025 628c7b7e0ad183264cb0350b56602998 330 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 4 325 36.092 T 11-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 dqs_3025 628c7b7e0ad183264cb0350b56602998 330 Gene3D G3DSA:3.40.718.10 3 325 2.9E-118 T 11-10-2018 dqs_3025 628c7b7e0ad183264cb0350b56602998 330 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7 322 3.1E-123 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 dqs_2664 94295092222fb5e73e3a84acbe79cffd 612 Gene3D G3DSA:1.10.274.90 7 145 6.4E-48 T 11-10-2018 dqs_2664 94295092222fb5e73e3a84acbe79cffd 612 Pfam PF06276 Ferric iron reductase FhuF-like transporter 429 586 1.3E-37 T 11-10-2018 IPR022770 Ferric iron reductase FhuF domain dqs_2664 94295092222fb5e73e3a84acbe79cffd 612 Pfam PF04183 IucA / IucC family 157 407 5.8E-71 T 11-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 dqs_2664 94295092222fb5e73e3a84acbe79cffd 612 Gene3D G3DSA:1.10.510.40 396 605 3.5E-71 T 11-10-2018 dqs_0355 4f0fba770f43b8b210b45291346151ee 220 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 190 2.4E-14 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_0355 4f0fba770f43b8b210b45291346151ee 220 SUPERFAMILY SSF52540 4 217 5.16E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0355 4f0fba770f43b8b210b45291346151ee 220 PIRSF PIRSF009320 4 219 1.3E-36 T 11-10-2018 dqs_0355 4f0fba770f43b8b210b45291346151ee 220 Gene3D G3DSA:3.40.50.300 5 217 2.4E-45 T 11-10-2018 dqs_2637 7523713a1782b50646e53a0c08c4cc97 384 SUPERFAMILY SSF52172 10 150 1.99E-40 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2637 7523713a1782b50646e53a0c08c4cc97 384 Gene3D G3DSA:1.10.3210.10 156 384 2.4E-72 T 11-10-2018 dqs_2637 7523713a1782b50646e53a0c08c4cc97 384 SUPERFAMILY SSF109604 168 369 5.97E-35 T 11-10-2018 dqs_2637 7523713a1782b50646e53a0c08c4cc97 384 Pfam PF13487 HD domain 240 322 3.6E-17 T 11-10-2018 dqs_2637 7523713a1782b50646e53a0c08c4cc97 384 Pfam PF00072 Response regulator receiver domain 18 128 7.8E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2637 7523713a1782b50646e53a0c08c4cc97 384 Gene3D G3DSA:3.40.50.2300 5 147 4.1E-39 T 11-10-2018 dqs_2637 7523713a1782b50646e53a0c08c4cc97 384 SMART SM00471 177 340 7.2E-9 T 11-10-2018 IPR003607 HD/PDEase domain dqs_2637 7523713a1782b50646e53a0c08c4cc97 384 SMART SM00448 15 128 1.3E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1077 84c3628bcb9d7e6295a4bf203e07e248 118 Pfam PF13276 HTH-like domain 18 73 3.2E-7 T 11-10-2018 IPR025948 HTH-like domain dqs_0424 44a985b66ea937da31b2a3a51916cbfa 228 PIRSF PIRSF006293 4 228 3.3E-76 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 dqs_0424 44a985b66ea937da31b2a3a51916cbfa 228 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 7 210 9.6E-59 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 dqs_0424 44a985b66ea937da31b2a3a51916cbfa 228 Pfam PF06508 Queuosine biosynthesis protein QueC 6 217 2.4E-76 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 dqs_0424 44a985b66ea937da31b2a3a51916cbfa 228 Gene3D G3DSA:3.40.50.620 5 226 7.5E-74 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_0424 44a985b66ea937da31b2a3a51916cbfa 228 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 5 223 55.983 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 dqs_0424 44a985b66ea937da31b2a3a51916cbfa 228 SUPERFAMILY SSF52402 6 225 7.28E-67 T 11-10-2018 dqs_0848 6773a3ecf032c038804a761747da47ae 449 Pfam PF04055 Radical SAM superfamily 150 326 3.5E-29 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_0848 6773a3ecf032c038804a761747da47ae 449 Pfam PF00919 Uncharacterized protein family UPF0004 3 103 1.1E-29 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 dqs_0848 6773a3ecf032c038804a761747da47ae 449 Gene3D G3DSA:3.40.50.12160 2 135 5.4E-33 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily dqs_0848 6773a3ecf032c038804a761747da47ae 449 SMART SM00729 146 365 2.6E-59 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_0848 6773a3ecf032c038804a761747da47ae 449 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 3 444 1.8E-175 T 11-10-2018 dqs_0848 6773a3ecf032c038804a761747da47ae 449 Pfam PF01938 TRAM domain 379 445 8.2E-18 T 11-10-2018 IPR002792 TRAM domain dqs_0848 6773a3ecf032c038804a761747da47ae 449 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 150 170 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 dqs_0848 6773a3ecf032c038804a761747da47ae 449 SUPERFAMILY SSF102114 128 372 9.29E-60 T 11-10-2018 dqs_0848 6773a3ecf032c038804a761747da47ae 449 Gene3D G3DSA:3.80.30.20 144 381 2.2E-81 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe dqs_0848 6773a3ecf032c038804a761747da47ae 449 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 442 5.0E-147 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 dqs_0848 6773a3ecf032c038804a761747da47ae 449 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 2 446 72.613 T 11-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Pfam PF01799 [2Fe-2S] binding domain 96 169 2.2E-30 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 SMART SM01092 386 487 2.1E-31 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Gene3D G3DSA:3.30.43.10 214 263 2.2E-17 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 SUPERFAMILY SSF56176 203 376 8.03E-50 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Gene3D G3DSA:3.30.390.50 386 487 2.9E-29 T 11-10-2018 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 54 62 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Gene3D G3DSA:3.30.465.10 264 376 2.1E-31 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 PIRSF PIRSF036557 14 499 2.2E-193 T 11-10-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 SUPERFAMILY SSF54292 16 100 1.48E-16 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 386 486 2.2E-31 T 11-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Gene3D G3DSA:3.10.20.30 13 102 4.1E-26 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 17 487 9.2E-191 T 11-10-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 SUPERFAMILY SSF55447 384 490 3.79E-32 T 11-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Gene3D G3DSA:1.10.150.120 103 175 5.6E-33 T 11-10-2018 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 212 376 2.3E-45 T 11-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 SUPERFAMILY SSF47741 108 181 3.79E-33 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily dqs_2344 e442dd3d0abd22ae4957e20ba2476f8e 508 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 21 68 5.9E-4 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_1267 a5b62d6ccdec0ef55da9eccbf6b4e305 534 SUPERFAMILY SSF51645 7 533 2.75E-185 T 11-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 dqs_1267 a5b62d6ccdec0ef55da9eccbf6b4e305 534 ProSitePatterns PS00510 Malate synthase signature. 266 281 - T 11-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 dqs_1267 a5b62d6ccdec0ef55da9eccbf6b4e305 534 Pfam PF01274 Malate synthase 12 533 4.4E-197 T 11-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 dqs_1267 a5b62d6ccdec0ef55da9eccbf6b4e305 534 PIRSF PIRSF001363 2 534 3.0E-244 T 11-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 dqs_1267 a5b62d6ccdec0ef55da9eccbf6b4e305 534 Gene3D G3DSA:1.20.1220.12 412 533 6.6E-46 T 11-10-2018 dqs_1267 a5b62d6ccdec0ef55da9eccbf6b4e305 534 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 24 533 4.4E-225 T 11-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 dqs_1267 a5b62d6ccdec0ef55da9eccbf6b4e305 534 Gene3D G3DSA:3.20.20.360 6 399 6.9E-182 T 11-10-2018 dqs_3993 60c363a0374741c3a72241977521f196 689 SUPERFAMILY SSF55073 262 417 7.14E-52 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3993 60c363a0374741c3a72241977521f196 689 Pfam PF13426 PAS domain 147 245 1.1E-6 T 11-10-2018 IPR000014 PAS domain dqs_3993 60c363a0374741c3a72241977521f196 689 Pfam PF13426 PAS domain 23 121 9.4E-6 T 11-10-2018 IPR000014 PAS domain dqs_3993 60c363a0374741c3a72241977521f196 689 SMART SM00086 82 122 1.4 T 11-10-2018 IPR001610 PAC motif dqs_3993 60c363a0374741c3a72241977521f196 689 SMART SM00086 206 246 40.0 T 11-10-2018 IPR001610 PAC motif dqs_3993 60c363a0374741c3a72241977521f196 689 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 255 416 1.4E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_3993 60c363a0374741c3a72241977521f196 689 Pfam PF00563 EAL domain 433 668 1.3E-73 T 11-10-2018 IPR001633 EAL domain dqs_3993 60c363a0374741c3a72241977521f196 689 SMART SM00267 246 417 2.7E-69 T 11-10-2018 IPR000160 GGDEF domain dqs_3993 60c363a0374741c3a72241977521f196 689 SMART SM00052 427 673 2.5E-118 T 11-10-2018 IPR001633 EAL domain dqs_3993 60c363a0374741c3a72241977521f196 689 SUPERFAMILY SSF55785 27 131 9.02E-14 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3993 60c363a0374741c3a72241977521f196 689 Gene3D G3DSA:3.20.20.450 429 682 2.3E-101 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3993 60c363a0374741c3a72241977521f196 689 SUPERFAMILY SSF141868 432 681 1.57E-90 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3993 60c363a0374741c3a72241977521f196 689 SMART SM00091 134 200 2.3E-7 T 11-10-2018 IPR000014 PAS domain dqs_3993 60c363a0374741c3a72241977521f196 689 SMART SM00091 10 77 1.4 T 11-10-2018 IPR000014 PAS domain dqs_3993 60c363a0374741c3a72241977521f196 689 Gene3D G3DSA:3.30.450.20 120 243 6.2E-21 T 11-10-2018 dqs_3993 60c363a0374741c3a72241977521f196 689 Gene3D G3DSA:3.30.450.20 13 119 9.8E-11 T 11-10-2018 dqs_3993 60c363a0374741c3a72241977521f196 689 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 130 252 1.3E-18 T 11-10-2018 IPR000014 PAS domain dqs_3993 60c363a0374741c3a72241977521f196 689 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 32 125 9.6E-9 T 11-10-2018 IPR000014 PAS domain dqs_3993 60c363a0374741c3a72241977521f196 689 Pfam PF00990 Diguanylate cyclase, GGDEF domain 257 412 5.6E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_3993 60c363a0374741c3a72241977521f196 689 PIRSF PIRSF005925 235 688 2.1E-153 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_3993 60c363a0374741c3a72241977521f196 689 PIRSF PIRSF005925 20 193 1.6 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase dqs_3993 60c363a0374741c3a72241977521f196 689 SUPERFAMILY SSF55785 120 243 2.9E-22 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3993 60c363a0374741c3a72241977521f196 689 Gene3D G3DSA:3.30.70.270 250 421 1.2E-60 T 11-10-2018 dqs_0229 eb34e9fe617f7c65480030ca84a008d6 494 Gene3D G3DSA:3.40.605.10 18 483 1.4E-150 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_0229 eb34e9fe617f7c65480030ca84a008d6 494 Pfam PF00171 Aldehyde dehydrogenase family 28 486 6.9E-140 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_0229 eb34e9fe617f7c65480030ca84a008d6 494 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_0229 eb34e9fe617f7c65480030ca84a008d6 494 SUPERFAMILY SSF53720 9 490 1.57E-147 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_0229 eb34e9fe617f7c65480030ca84a008d6 494 Gene3D G3DSA:3.40.309.10 263 456 1.4E-150 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 SUPERFAMILY SSF52540 5 629 2.58E-161 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 Pfam PF13361 UvrD-like helicase C-terminal domain 270 606 3.5E-69 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 Gene3D G3DSA:1.10.486.10 376 537 3.4E-117 T 11-10-2018 dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 Pfam PF00580 UvrD/REP helicase N-terminal domain 5 116 5.4E-32 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 Pfam PF00580 UvrD/REP helicase N-terminal domain 126 264 1.5E-37 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 Gene3D G3DSA:1.10.10.160 107 182 2.9E-90 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 Gene3D G3DSA:3.40.50.300 273 625 3.4E-117 T 11-10-2018 dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 3 658 38.237 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 dqs_0195 ae16d0917ee85ebe4fc48a0e49c78f24 664 Gene3D G3DSA:3.40.50.300 5 266 2.9E-90 T 11-10-2018 dqs_3712 fc237f96e1724713fdb894f669ada090 249 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 40 207 1.2E-18 T 11-10-2018 dqs_3712 fc237f96e1724713fdb894f669ada090 249 Gene3D G3DSA:1.10.510.10 130 187 3.2E-6 T 11-10-2018 dqs_3712 fc237f96e1724713fdb894f669ada090 249 SUPERFAMILY SSF56112 34 241 1.64E-15 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_0666 30bd06a990d777071401ad8ec7ce8535 395 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 172 348 2.8E-23 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 dqs_0666 30bd06a990d777071401ad8ec7ce8535 395 SUPERFAMILY SSF88697 1 69 1.28E-15 T 11-10-2018 IPR015947 PUA-like superfamily dqs_0666 30bd06a990d777071401ad8ec7ce8535 395 SMART SM00359 2 87 5.4E-12 T 11-10-2018 IPR002478 PUA domain GO:0003723 dqs_0666 30bd06a990d777071401ad8ec7ce8535 395 SUPERFAMILY SSF53335 78 391 1.67E-68 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0666 30bd06a990d777071401ad8ec7ce8535 395 Gene3D G3DSA:3.30.750.80 72 180 5.4E-37 T 11-10-2018 dqs_0666 30bd06a990d777071401ad8ec7ce8535 395 Gene3D G3DSA:3.40.50.150 181 395 2.7E-68 T 11-10-2018 dqs_0666 30bd06a990d777071401ad8ec7ce8535 395 Gene3D G3DSA:2.30.130.10 1 70 5.4E-27 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 SUPERFAMILY SSF55874 400 582 2.1E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Gene3D G3DSA:2.40.50.180 607 664 3.8E-33 T 11-10-2018 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 SUPERFAMILY SSF50341 583 709 1.44E-29 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Pfam PF01584 CheW-like domain 589 711 1.7E-23 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Gene3D G3DSA:3.30.565.10 399 583 1.2E-57 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Gene3D G3DSA:1.10.287.560 338 398 3.3E-9 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 446 583 2.4E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 SMART SM01231 338 398 2.2E-12 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 SMART SM00073 1 98 6.1E-29 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 SUPERFAMILY SSF47226 1 122 1.26E-29 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Gene3D G3DSA:2.30.30.40 584 705 3.8E-33 T 11-10-2018 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 SMART SM00260 576 709 9.5E-29 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 339 397 3.7E-8 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Gene3D G3DSA:1.20.120.160 1 129 7.7E-36 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 Pfam PF01627 Hpt domain 3 90 1.6E-16 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 PRINTS PR00344 Bacterial sensor protein C-terminal signature 544 562 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 502 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 538 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 PRINTS PR00344 Bacterial sensor protein C-terminal signature 568 581 1.7E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 SMART SM00387 443 584 9.4E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0418 9c7f33190df2b941046d7eaac7896b67 731 SUPERFAMILY SSF47384 339 399 2.82E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2184 3ba5e0623607b68b2e7aeecdb591f73c 128 Gene3D G3DSA:3.40.50.12740 7 127 8.6E-35 T 11-10-2018 dqs_2184 3ba5e0623607b68b2e7aeecdb591f73c 128 SMART SM00448 6 118 1.2E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2184 3ba5e0623607b68b2e7aeecdb591f73c 128 SUPERFAMILY SSF52172 6 123 1.57E-36 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2184 3ba5e0623607b68b2e7aeecdb591f73c 128 Pfam PF00072 Response regulator receiver domain 8 118 6.9E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0008 21c451ec973c9a0d7be026ea9f289171 526 SMART SM00953 281 446 2.2E-12 T 11-10-2018 IPR014914 RES domain dqs_0008 21c451ec973c9a0d7be026ea9f289171 526 Pfam PF08808 RES domain 293 441 5.4E-23 T 11-10-2018 IPR014914 RES domain dqs_0179 779ef6ec2b819684052f294ae2abc505 486 SUPERFAMILY SSF89095 303 409 7.19E-31 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 dqs_0179 779ef6ec2b819684052f294ae2abc505 486 Gene3D G3DSA:1.10.10.410 424 485 1.8E-26 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal dqs_0179 779ef6ec2b819684052f294ae2abc505 486 SMART SM00845 334 484 6.5E-80 T 11-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 dqs_0179 779ef6ec2b819684052f294ae2abc505 486 Gene3D G3DSA:1.10.150.380 303 423 1.1E-30 T 11-10-2018 dqs_0179 779ef6ec2b819684052f294ae2abc505 486 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 5 485 37.21 T 11-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 dqs_0179 779ef6ec2b819684052f294ae2abc505 486 Pfam PF02637 GatB domain 335 484 2.7E-51 T 11-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 dqs_0179 779ef6ec2b819684052f294ae2abc505 486 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 150 164 - T 11-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 dqs_0179 779ef6ec2b819684052f294ae2abc505 486 SUPERFAMILY SSF55931 7 302 7.19E-117 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 dqs_0179 779ef6ec2b819684052f294ae2abc505 486 Pfam PF02934 GatB/GatE catalytic domain 8 293 3.5E-109 T 11-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 dqs_0179 779ef6ec2b819684052f294ae2abc505 486 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 5 484 1.6E-164 T 11-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 dqs_1177 dbfd9cf36e5feb2caab70bfe2b058d8a 365 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 364 61.111 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 dqs_1177 dbfd9cf36e5feb2caab70bfe2b058d8a 365 SUPERFAMILY SSF53383 16 364 5.64E-85 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1177 dbfd9cf36e5feb2caab70bfe2b058d8a 365 Gene3D G3DSA:3.40.640.10 49 273 2.5E-115 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_1177 dbfd9cf36e5feb2caab70bfe2b058d8a 365 Gene3D G3DSA:3.90.1150.10 25 358 2.5E-115 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_1177 dbfd9cf36e5feb2caab70bfe2b058d8a 365 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 11 362 4.3E-108 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 dqs_1177 dbfd9cf36e5feb2caab70bfe2b058d8a 365 Pfam PF00155 Aminotransferase class I and II 36 355 9.6E-55 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_3468 72a3133db57aa7d525876d952f83a952 254 Gene3D G3DSA:2.60.200.20 141 253 4.6E-6 T 11-10-2018 dqs_3468 72a3133db57aa7d525876d952f83a952 254 SUPERFAMILY SSF49879 171 251 1.11E-8 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 dqs_3468 72a3133db57aa7d525876d952f83a952 254 Gene3D G3DSA:2.60.200.20 3 98 5.4E-25 T 11-10-2018 dqs_3468 72a3133db57aa7d525876d952f83a952 254 SMART SM00240 22 72 1.9E-15 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_3468 72a3133db57aa7d525876d952f83a952 254 SUPERFAMILY SSF49879 3 96 3.83E-27 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 dqs_3468 72a3133db57aa7d525876d952f83a952 254 Pfam PF00498 FHA domain 24 86 3.8E-19 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 1 364 8.9E-184 T 11-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 SUPERFAMILY SSF51735 1 138 2.46E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 1 113 1.0E-18 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 PIRSF PIRSF000148 1 366 1.4E-54 T 11-10-2018 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 SMART SM00859 1 113 1.4E-17 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 258 272 - T 11-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 SUPERFAMILY SSF55347 125 351 3.87E-73 T 11-10-2018 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 Gene3D G3DSA:3.30.360.10 126 347 8.1E-135 T 11-10-2018 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 135 350 2.4E-50 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 dqs_1150 ca403fd63e53b5613fd0106eafa6b95e 366 Gene3D G3DSA:3.40.50.720 1 353 8.1E-135 T 11-10-2018 dqs_2999 3033b6e6f18b9f4e66d3317fdbd13f54 343 Pfam PF13519 von Willebrand factor type A domain 89 177 3.4E-16 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_2999 3033b6e6f18b9f4e66d3317fdbd13f54 343 Pfam PF00092 von Willebrand factor type A domain 218 301 9.7E-7 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_2999 3033b6e6f18b9f4e66d3317fdbd13f54 343 SMART SM00327 86 308 8.4E-17 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_2999 3033b6e6f18b9f4e66d3317fdbd13f54 343 Pfam PF07584 Aerotolerance regulator N-terminal 1 76 1.6E-7 T 11-10-2018 IPR024163 Aerotolerance regulator, N-terminal dqs_2999 3033b6e6f18b9f4e66d3317fdbd13f54 343 Gene3D G3DSA:3.40.50.410 83 305 3.6E-45 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_2999 3033b6e6f18b9f4e66d3317fdbd13f54 343 SUPERFAMILY SSF53300 89 304 6.57E-28 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_3677 495192031d9e770caf1c2fb2e67d62db 319 Gene3D G3DSA:3.30.950.10 191 312 8.8E-22 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 dqs_3677 495192031d9e770caf1c2fb2e67d62db 319 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 63 274 8.2E-39 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 dqs_3677 495192031d9e770caf1c2fb2e67d62db 319 Gene3D G3DSA:3.40.1010.10 60 190 1.6E-25 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 dqs_3677 495192031d9e770caf1c2fb2e67d62db 319 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 62 292 3.1E-68 T 11-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 dqs_3677 495192031d9e770caf1c2fb2e67d62db 319 SUPERFAMILY SSF53790 59 299 3.05E-41 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 dqs_3190 f41bff4ca13d749817d2c746d574380f 554 Gene3D G3DSA:3.90.226.10 12 554 2.0E-293 T 11-10-2018 dqs_3190 f41bff4ca13d749817d2c746d574380f 554 TIGRFAM TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase 12 554 6.7E-299 T 11-10-2018 IPR017633 Benzoyl-CoA-dihydrodiol lyase KEGG: 00362+4.1.2.44|MetaCyc: PWY-1361 dqs_3190 f41bff4ca13d749817d2c746d574380f 554 SUPERFAMILY SSF52096 20 241 3.89E-32 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_3190 f41bff4ca13d749817d2c746d574380f 554 SUPERFAMILY SSF52096 302 541 4.04E-15 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_3190 f41bff4ca13d749817d2c746d574380f 554 Gene3D G3DSA:3.90.226.10 263 489 2.0E-293 T 11-10-2018 dqs_3190 f41bff4ca13d749817d2c746d574380f 554 Pfam PF00378 Enoyl-CoA hydratase/isomerase 53 240 2.1E-22 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_3461 4b0e477b65f0fd3a3fe3f9a126e3e56a 345 SUPERFAMILY SSF52418 78 341 6.54E-95 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_3461 4b0e477b65f0fd3a3fe3f9a126e3e56a 345 Pfam PF00591 Glycosyl transferase family, a/b domain 78 328 5.3E-93 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_3461 4b0e477b65f0fd3a3fe3f9a126e3e56a 345 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 66 1.5E-11 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_3461 4b0e477b65f0fd3a3fe3f9a126e3e56a 345 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 9 338 1.3E-121 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 dqs_3461 4b0e477b65f0fd3a3fe3f9a126e3e56a 345 SUPERFAMILY SSF47648 4 70 2.22E-16 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_3461 4b0e477b65f0fd3a3fe3f9a126e3e56a 345 Gene3D G3DSA:1.20.970.10 1 72 1.3E-31 T 11-10-2018 dqs_3461 4b0e477b65f0fd3a3fe3f9a126e3e56a 345 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 7 338 36.853 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 dqs_3461 4b0e477b65f0fd3a3fe3f9a126e3e56a 345 Gene3D G3DSA:3.40.1030.10 76 343 1.8E-106 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 Gene3D G3DSA:3.40.50.2300 5 147 1.2E-20 T 11-10-2018 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 PIRSF PIRSF009393 1 747 2.9E-277 T 11-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 Gene3D G3DSA:3.90.1150.10 457 628 8.6E-70 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 149 582 2.1E-148 T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 SUPERFAMILY SSF53383 149 602 2.12E-119 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 Gene3D G3DSA:3.90.100.10 629 746 2.5E-41 T 11-10-2018 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 609 733 2.6E-46 T 11-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 390 404 - T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 20 143 2.8E-37 T 11-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 Gene3D G3DSA:3.40.640.10 149 454 1.5E-96 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_3336 334bb251d550c6a243b39de58d3d01a7 747 SUPERFAMILY SSF55904 604 742 4.58E-45 T 11-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 dqs_2275 65b2263241e5d86eb793d5f1ca6bed23 143 Pfam PF00571 CBS domain 14 57 6.4E-7 T 11-10-2018 IPR000644 CBS domain dqs_2275 65b2263241e5d86eb793d5f1ca6bed23 143 Pfam PF00571 CBS domain 73 123 3.8E-10 T 11-10-2018 IPR000644 CBS domain dqs_2275 65b2263241e5d86eb793d5f1ca6bed23 143 SUPERFAMILY SSF54631 4 122 6.82E-28 T 11-10-2018 dqs_2275 65b2263241e5d86eb793d5f1ca6bed23 143 SMART SM00116 79 126 1.2E-8 T 11-10-2018 IPR000644 CBS domain dqs_2275 65b2263241e5d86eb793d5f1ca6bed23 143 SMART SM00116 14 61 1.8E-5 T 11-10-2018 IPR000644 CBS domain dqs_2275 65b2263241e5d86eb793d5f1ca6bed23 143 Gene3D G3DSA:3.10.580.10 2 139 1.1E-34 T 11-10-2018 dqs_1465 faacc593597897ebde3eefcf15308ece 297 SUPERFAMILY SSF46626 59 208 4.36E-33 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1465 faacc593597897ebde3eefcf15308ece 297 Gene3D G3DSA:1.20.58.1490 5 101 6.3E-29 T 11-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily dqs_1465 faacc593597897ebde3eefcf15308ece 297 SUPERFAMILY SSF46626 214 295 1.03E-25 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1465 faacc593597897ebde3eefcf15308ece 297 PIRSF PIRSF000006 5 297 4.6E-95 T 11-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III dqs_1465 faacc593597897ebde3eefcf15308ece 297 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 40 85 2.9E-21 T 11-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal dqs_1465 faacc593597897ebde3eefcf15308ece 297 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 129 202 7.3E-14 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1465 faacc593597897ebde3eefcf15308ece 297 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 215 290 2.6E-13 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1465 faacc593597897ebde3eefcf15308ece 297 Gene3D G3DSA:1.10.760.10 183 270 2.0E-76 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1465 faacc593597897ebde3eefcf15308ece 297 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 36 296 2.9E-87 T 11-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III dqs_1465 faacc593597897ebde3eefcf15308ece 297 Gene3D G3DSA:1.10.760.10 104 293 2.0E-76 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 262 819 3.5E-159 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 Gene3D G3DSA:3.40.1110.10 533 648 7.0E-74 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 Gene3D G3DSA:3.40.50.1000 503 769 7.0E-74 T 11-10-2018 IPR023214 HAD superfamily dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 ProSitePatterns PS01229 Hypothetical cof family signature 2. 717 739 - T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 SUPERFAMILY SSF81665 289 795 1.96E-15 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 296 798 1.6E-77 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 19 101 2.7E-26 T 11-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 Pfam PF00122 E1-E2 ATPase 329 501 1.2E-45 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 522 536 3.2E-24 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 717 736 3.2E-24 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 374 388 3.2E-24 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 663 673 3.2E-24 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 740 752 3.2E-24 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 244 820 9.4E-151 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 Pfam PF00702 haloacid dehalogenase-like hydrolase 518 730 2.4E-35 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 SUPERFAMILY SSF55008 103 178 2.62E-18 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 SUPERFAMILY SSF56784 521 817 1.7E-49 T 11-10-2018 IPR036412 HAD-like superfamily dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 Pfam PF00403 Heavy-metal-associated domain 112 170 4.0E-10 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 524 530 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 Gene3D G3DSA:3.30.70.100 106 190 2.1E-14 T 11-10-2018 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 SUPERFAMILY SSF81653 336 424 1.02E-21 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 dqs_1460 6b8c980cad231ee4a90a80e22405acd5 827 Gene3D G3DSA:2.70.150.20 317 428 5.4E-32 T 11-10-2018 dqs_3978 5d80ad84e941972e001236942c2844a2 339 Gene3D G3DSA:3.40.50.300 2 253 1.9E-76 T 11-10-2018 dqs_3978 5d80ad84e941972e001236942c2844a2 339 Pfam PF00005 ABC transporter 18 160 1.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3978 5d80ad84e941972e001236942c2844a2 339 Pfam PF08402 TOBE domain 266 331 2.7E-9 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 dqs_3978 5d80ad84e941972e001236942c2844a2 339 SUPERFAMILY SSF52540 3 242 4.14E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3978 5d80ad84e941972e001236942c2844a2 339 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3978 5d80ad84e941972e001236942c2844a2 339 SUPERFAMILY SSF50331 252 330 2.27E-10 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_3978 5d80ad84e941972e001236942c2844a2 339 SMART SM00382 27 210 2.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2789 14698722708e95ec1984636cab6e6d95 253 SUPERFAMILY SSF53335 4 206 1.07E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2789 14698722708e95ec1984636cab6e6d95 253 Gene3D G3DSA:3.40.50.150 9 251 1.1E-92 T 11-10-2018 dqs_2789 14698722708e95ec1984636cab6e6d95 253 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 253 42.753 T 11-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 dqs_2789 14698722708e95ec1984636cab6e6d95 253 Gene3D G3DSA:1.10.150.290 132 234 1.1E-92 T 11-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 dqs_2789 14698722708e95ec1984636cab6e6d95 253 Pfam PF13649 Methyltransferase domain 35 124 6.7E-20 T 11-10-2018 dqs_1315 29c8c94ea7e55ec214141cdb7607a859 84 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 64 1.1E-24 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 dqs_1315 29c8c94ea7e55ec214141cdb7607a859 84 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 10 50 8.0E-9 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 dqs_1315 29c8c94ea7e55ec214141cdb7607a859 84 PIRSF PIRSF006488 1 82 9.6E-25 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 dqs_1315 29c8c94ea7e55ec214141cdb7607a859 84 Pfam PF02609 Exonuclease VII small subunit 11 61 2.4E-22 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 dqs_1315 29c8c94ea7e55ec214141cdb7607a859 84 SUPERFAMILY SSF116842 5 69 6.8E-21 T 11-10-2018 dqs_1315 29c8c94ea7e55ec214141cdb7607a859 84 Gene3D G3DSA:1.10.287.1040 5 78 9.2E-26 T 11-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 dqs_1315 29c8c94ea7e55ec214141cdb7607a859 84 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 15.561 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 dqs_3963 2ce1e9c08f9a9a3bb98d600b1e4b9c2e 164 SUPERFAMILY SSF50475 13 163 3.63E-44 T 11-10-2018 dqs_3963 2ce1e9c08f9a9a3bb98d600b1e4b9c2e 164 Pfam PF01613 Flavin reductase like domain 21 163 7.5E-34 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_3963 2ce1e9c08f9a9a3bb98d600b1e4b9c2e 164 Gene3D G3DSA:2.30.110.10 2 164 7.6E-46 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_3963 2ce1e9c08f9a9a3bb98d600b1e4b9c2e 164 SMART SM00903 19 162 1.2E-56 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_3200 d23748d0a33cac75803bb65c5e8d1b2d 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 465 540 2.1E-17 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_3200 d23748d0a33cac75803bb65c5e8d1b2d 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 206 217 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_3200 d23748d0a33cac75803bb65c5e8d1b2d 562 Gene3D G3DSA:3.40.50.12780 6 447 8.4E-119 T 11-10-2018 dqs_3200 d23748d0a33cac75803bb65c5e8d1b2d 562 SUPERFAMILY SSF56801 16 551 1.16E-159 T 11-10-2018 dqs_3200 d23748d0a33cac75803bb65c5e8d1b2d 562 Pfam PF00501 AMP-binding enzyme 24 456 1.1E-108 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_3200 d23748d0a33cac75803bb65c5e8d1b2d 562 Gene3D G3DSA:3.30.300.30 450 556 1.8E-33 T 11-10-2018 dqs_0208 f3fb5f9c1efd6960fd255fd3375f4b82 132 SMART SM00528 72 117 9.2E-10 T 11-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 dqs_0208 f3fb5f9c1efd6960fd255fd3375f4b82 132 Gene3D G3DSA:4.10.430.10 66 121 1.8E-12 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 dqs_0208 f3fb5f9c1efd6960fd255fd3375f4b82 132 Pfam PF00816 H-NS histone family 12 110 4.1E-22 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 dqs_0208 f3fb5f9c1efd6960fd255fd3375f4b82 132 SUPERFAMILY SSF81273 75 115 2.0E-10 T 11-10-2018 dqs_3545 7ab4a13daac4d2c1863eddf9dffde5ac 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 11-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3545 7ab4a13daac4d2c1863eddf9dffde5ac 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 102 7.1E-38 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3545 7ab4a13daac4d2c1863eddf9dffde5ac 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 97 21.121 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3545 7ab4a13daac4d2c1863eddf9dffde5ac 105 SMART SM00739 3 30 0.0014 T 11-10-2018 IPR005824 KOW dqs_3545 7ab4a13daac4d2c1863eddf9dffde5ac 105 SUPERFAMILY SSF50104 3 101 3.01E-32 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily dqs_3545 7ab4a13daac4d2c1863eddf9dffde5ac 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 101 1.2E-25 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3545 7ab4a13daac4d2c1863eddf9dffde5ac 105 Gene3D G3DSA:2.30.30.30 1 104 1.7E-37 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 dqs_2910 29a229f8aa5854970a37b9f057fdb281 306 Pfam PF01063 Amino-transferase class IV 37 266 2.4E-50 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 dqs_2910 29a229f8aa5854970a37b9f057fdb281 306 Gene3D G3DSA:3.20.10.10 132 305 8.1E-52 T 11-10-2018 dqs_2910 29a229f8aa5854970a37b9f057fdb281 306 SUPERFAMILY SSF56752 1 303 4.58E-100 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 dqs_2910 29a229f8aa5854970a37b9f057fdb281 306 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 306 5.9E-136 T 11-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 dqs_2910 29a229f8aa5854970a37b9f057fdb281 306 Gene3D G3DSA:3.30.470.10 2 130 6.6E-40 T 11-10-2018 dqs_2106 0a3e0ef4f02aaaddc2b597e674f97dd3 790 Pfam PF03176 MMPL family 570 765 9.4E-19 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_2106 0a3e0ef4f02aaaddc2b597e674f97dd3 790 Pfam PF03176 MMPL family 50 279 2.1E-6 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_2106 0a3e0ef4f02aaaddc2b597e674f97dd3 790 Gene3D G3DSA:1.20.1640.10 598 770 3.2E-10 T 11-10-2018 dqs_2106 0a3e0ef4f02aaaddc2b597e674f97dd3 790 SUPERFAMILY SSF82866 553 768 1.96E-30 T 11-10-2018 dqs_2106 0a3e0ef4f02aaaddc2b597e674f97dd3 790 Gene3D G3DSA:1.20.1640.10 185 383 1.4E-5 T 11-10-2018 dqs_2106 0a3e0ef4f02aaaddc2b597e674f97dd3 790 SUPERFAMILY SSF82866 160 377 2.49E-24 T 11-10-2018 dqs_2153 dd8bda3392b10eafd783847b0fcf0182 246 Pfam PF01048 Phosphorylase superfamily 2 242 1.2E-46 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 dqs_2153 dd8bda3392b10eafd783847b0fcf0182 246 Gene3D G3DSA:3.40.50.1580 1 245 1.1E-80 T 11-10-2018 dqs_2153 dd8bda3392b10eafd783847b0fcf0182 246 SUPERFAMILY SSF53167 1 244 3.48E-81 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 dqs_2153 dd8bda3392b10eafd783847b0fcf0182 246 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 1 245 32.077 T 11-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 dqs_4083 8c9159e9b511504c52c9596672b44cf7 331 SUPERFAMILY SSF54862 142 323 1.81E-17 T 11-10-2018 dqs_4083 8c9159e9b511504c52c9596672b44cf7 331 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 68 323 2.1E-102 T 11-10-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family dqs_4083 8c9159e9b511504c52c9596672b44cf7 331 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 270 281 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_4083 8c9159e9b511504c52c9596672b44cf7 331 Pfam PF12801 4Fe-4S binding domain 227 256 3.8E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_4083 8c9159e9b511504c52c9596672b44cf7 331 Pfam PF12801 4Fe-4S binding domain 130 172 9.8E-14 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_4083 8c9159e9b511504c52c9596672b44cf7 331 Gene3D G3DSA:1.10.1060.10 261 329 1.8E-5 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 PRINTS PR00409 Phthalate dioxygenase reductase family signature 264 278 1.4E-7 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 PRINTS PR00409 Phthalate dioxygenase reductase family signature 368 376 1.4E-7 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 PRINTS PR00409 Phthalate dioxygenase reductase family signature 286 305 1.4E-7 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 SUPERFAMILY SSF52343 265 398 7.2E-20 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 Gene3D G3DSA:2.40.30.10 176 274 2.5E-14 T 11-10-2018 dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 Gene3D G3DSA:3.40.50.80 281 403 3.4E-21 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 SUPERFAMILY SSF63380 192 276 4.84E-17 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 Pfam PF08022 FAD-binding domain 200 274 5.6E-6 T 11-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 dqs_0338 dccb2c1bfe0936e9463d165057a79acd 403 Pfam PF01794 Ferric reductase like transmembrane component 4 138 3.2E-16 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 Gene3D G3DSA:3.30.70.270 4 164 5.1E-67 T 11-10-2018 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 Pfam PF00817 impB/mucB/samB family 8 154 2.8E-52 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 SUPERFAMILY SSF56672 1 234 8.81E-95 T 11-10-2018 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 Gene3D G3DSA:3.30.1490.100 237 349 2.4E-21 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 Gene3D G3DSA:2.30.40.20 21 73 5.1E-67 T 11-10-2018 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 Hamap MF_01113 DNA polymerase IV [dinB]. 1 351 36.506 T 11-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 Pfam PF11799 impB/mucB/samB family C-terminal domain 234 336 6.3E-5 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 Pfam PF11798 IMS family HHH motif 166 197 1.0E-7 T 11-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 SUPERFAMILY SSF100879 241 340 3.92E-20 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 dqs_2921 037ce6f34d00b099dea7140544a17dd8 357 Gene3D G3DSA:1.10.150.20 166 229 6.8E-21 T 11-10-2018 dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 SMART SM00448 5 128 3.4E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 Gene3D G3DSA:3.40.50.2300 2 134 6.0E-29 T 11-10-2018 dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 PIRSF PIRSF000876 2 365 4.9E-135 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 SUPERFAMILY SSF52172 3 109 2.85E-27 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 Gene3D G3DSA:3.40.50.180 171 364 1.1E-76 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 Pfam PF01339 CheB methylesterase 181 359 2.9E-61 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 SUPERFAMILY SSF52738 176 363 2.48E-72 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 364 41.196 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 dqs_0413 3ed9c72a5b52cfbb3e1c6ff511b36b58 365 Pfam PF00072 Response regulator receiver domain 7 109 2.5E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1205 27a5ba9dacb023f4e33f7c97b9455810 308 Pfam PF00850 Histone deacetylase domain 21 305 3.7E-81 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1205 27a5ba9dacb023f4e33f7c97b9455810 308 SUPERFAMILY SSF52768 2 307 3.21E-105 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily dqs_1205 27a5ba9dacb023f4e33f7c97b9455810 308 PRINTS PR01270 Histone deacetylase superfamily signature 123 146 5.6E-18 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1205 27a5ba9dacb023f4e33f7c97b9455810 308 PRINTS PR01270 Histone deacetylase superfamily signature 157 172 5.6E-18 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1205 27a5ba9dacb023f4e33f7c97b9455810 308 PRINTS PR01270 Histone deacetylase superfamily signature 235 245 5.6E-18 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1205 27a5ba9dacb023f4e33f7c97b9455810 308 Gene3D G3DSA:3.40.800.20 1 308 3.2E-119 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1244 5cc060a6fb669ad708ab93cbb5a9f2b0 102 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 2 97 29.037 T 11-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS dqs_1244 5cc060a6fb669ad708ab93cbb5a9f2b0 102 Gene3D G3DSA:3.30.1390.10 1 102 5.0E-42 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like dqs_1244 5cc060a6fb669ad708ab93cbb5a9f2b0 102 SUPERFAMILY SSF54736 17 101 4.39E-33 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like dqs_1244 5cc060a6fb669ad708ab93cbb5a9f2b0 102 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 20 97 3.7E-34 T 11-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 dqs_2833 68171f15902fef746c2cbb86b5f45acc 434 Pfam PF13714 Phosphoenolpyruvate phosphomutase 150 407 4.7E-65 T 11-10-2018 dqs_2833 68171f15902fef746c2cbb86b5f45acc 434 Pfam PF01467 Cytidylyltransferase-like 11 133 7.0E-14 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 dqs_2833 68171f15902fef746c2cbb86b5f45acc 434 TIGRFAM TIGR02320 PEP_mutase: phosphoenolpyruvate mutase 150 433 4.6E-122 T 11-10-2018 IPR012698 Phosphoenolpyruvate phosphomutase, core GO:0050188 KEGG: 00440+5.4.2.9|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7419|MetaCyc: PWY-7510|MetaCyc: PWY-7769 dqs_2833 68171f15902fef746c2cbb86b5f45acc 434 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 66 7.3E-14 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 dqs_2833 68171f15902fef746c2cbb86b5f45acc 434 Gene3D G3DSA:3.20.20.60 143 434 5.2E-69 T 11-10-2018 dqs_2833 68171f15902fef746c2cbb86b5f45acc 434 SUPERFAMILY SSF52374 4 133 3.34E-21 T 11-10-2018 dqs_2833 68171f15902fef746c2cbb86b5f45acc 434 Gene3D G3DSA:3.40.50.620 3 139 1.4E-28 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2833 68171f15902fef746c2cbb86b5f45acc 434 SUPERFAMILY SSF51621 95 430 4.92E-66 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 SMART SM00382 63 198 4.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 SUPERFAMILY SSF52540 32 263 4.95E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 352 185.965 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 265 338 2.7E-33 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 Gene3D G3DSA:3.40.50.300 30 193 8.1E-40 T 11-10-2018 dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 35 338 2.8E-148 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 262 343 1.0E-36 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 21 247 2.0E-119 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 SUPERFAMILY SSF46785 268 342 1.9E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 Gene3D G3DSA:1.10.10.10 269 346 2.7E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0669 c0e8f101d63e9dd3ce5ed9c9c6689d35 352 Gene3D G3DSA:1.10.8.60 194 268 6.9E-32 T 11-10-2018 dqs_0190 91e8a095d8f8cfad5ccc7e9e7ad7a9b0 285 Gene3D G3DSA:3.30.470.10 1 119 2.5E-35 T 11-10-2018 dqs_0190 91e8a095d8f8cfad5ccc7e9e7ad7a9b0 285 SUPERFAMILY SSF56752 3 277 1.7E-74 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 dqs_0190 91e8a095d8f8cfad5ccc7e9e7ad7a9b0 285 Pfam PF01063 Amino-transferase class IV 30 252 1.4E-42 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 dqs_0190 91e8a095d8f8cfad5ccc7e9e7ad7a9b0 285 Gene3D G3DSA:3.20.10.10 121 283 2.6E-51 T 11-10-2018 dqs_3071 9478026fe609ad1c2b85d42df1def78a 158 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 86 97 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3071 9478026fe609ad1c2b85d42df1def78a 158 SUPERFAMILY SSF54862 4 137 1.34E-39 T 11-10-2018 dqs_3071 9478026fe609ad1c2b85d42df1def78a 158 Pfam PF13247 4Fe-4S dicluster domain 49 134 1.8E-13 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3071 9478026fe609ad1c2b85d42df1def78a 158 Gene3D G3DSA:3.30.70.20 5 145 2.8E-24 T 11-10-2018 dqs_3071 9478026fe609ad1c2b85d42df1def78a 158 Gene3D G3DSA:3.30.70.20 59 112 2.8E-24 T 11-10-2018 dqs_3071 9478026fe609ad1c2b85d42df1def78a 158 Pfam PF00037 4Fe-4S binding domain 6 22 6.3E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Gene3D G3DSA:1.20.50.20 360 409 1.2E-6 T 11-10-2018 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Pfam PF10410 DnaB-helicase binding domain of primase 364 414 4.9E-11 T 11-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 SMART SM00400 33 87 2.5E-33 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 SUPERFAMILY SSF56731 112 413 9.02E-106 T 11-10-2018 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Gene3D G3DSA:1.10.860.10 458 599 1.5E-18 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Gene3D G3DSA:3.90.580.10 1 99 2.4E-38 T 11-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 SUPERFAMILY SSF57783 1 96 9.18E-37 T 11-10-2018 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 SMART SM00493 251 322 1.1E-17 T 11-10-2018 IPR006171 TOPRIM domain dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Pfam PF08275 DNA primase catalytic core, N-terminal domain 122 243 3.9E-40 T 11-10-2018 IPR013264 DNA primase, catalytic core, N-terminal dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Gene3D G3DSA:3.90.980.10 105 232 4.2E-42 T 11-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily dqs_3363 e3814214604e14ba4ac19ad95543315e 606 SUPERFAMILY SSF117023 461 595 3.92E-23 T 11-10-2018 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 SMART SM00766 463 591 5.0E-21 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 TIGRFAM TIGR01391 dnaG: DNA primase 1 409 1.5E-144 T 11-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Pfam PF08278 DNA primase DnaG DnaB-binding 466 590 3.1E-24 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Hamap MF_00974 DNA primase [dnaG]. 1 592 28.616 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Gene3D G3DSA:3.40.1360.10 233 359 4.3E-42 T 11-10-2018 dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Pfam PF13662 Toprim domain 253 317 3.5E-17 T 11-10-2018 IPR006171 TOPRIM domain dqs_3363 e3814214604e14ba4ac19ad95543315e 606 Pfam PF01807 CHC2 zinc finger 3 97 6.9E-38 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 dqs_3532 580a0198f076ac806c9ef58d5398807b 129 SUPERFAMILY SSF53137 14 129 1.05E-47 T 11-10-2018 dqs_3532 580a0198f076ac806c9ef58d5398807b 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 11-10-2018 IPR018102 Ribosomal S11, conserved site dqs_3532 580a0198f076ac806c9ef58d5398807b 129 Gene3D G3DSA:3.30.420.80 1 129 1.9E-56 T 11-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3532 580a0198f076ac806c9ef58d5398807b 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 2.3E-56 T 11-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3532 580a0198f076ac806c9ef58d5398807b 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.805 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 dqs_3532 580a0198f076ac806c9ef58d5398807b 129 PIRSF PIRSF002131 1 129 6.4E-53 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 dqs_3532 580a0198f076ac806c9ef58d5398807b 129 Pfam PF00411 Ribosomal protein S11 19 128 1.6E-50 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 dqs_3627 8489fc57df038acd8a41186637d382ff 207 Pfam PF02613 Nitrate reductase delta subunit 57 174 9.2E-24 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone dqs_3627 8489fc57df038acd8a41186637d382ff 207 SUPERFAMILY SSF89155 16 206 9.16E-44 T 11-10-2018 IPR036411 TorD-like superfamily dqs_3627 8489fc57df038acd8a41186637d382ff 207 Gene3D G3DSA:1.10.3480.10 13 206 1.0E-33 T 11-10-2018 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 SMART SM00889 485 603 3.4E-77 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Pfam PF14492 Elongation Factor G, domain II 409 482 3.7E-34 T 11-10-2018 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Gene3D G3DSA:3.30.70.240 609 680 9.1E-93 T 11-10-2018 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Pfam PF00679 Elongation factor G C-terminus 605 691 2.9E-32 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Gene3D G3DSA:3.30.230.10 489 693 9.1E-93 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 1.7E-31 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Gene3D G3DSA:2.40.30.10 294 405 4.8E-45 T 11-10-2018 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Pfam PF03144 Elongation factor Tu domain 2 329 396 1.1E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 698 0.0 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Gene3D G3DSA:3.40.50.300 1 293 6.1E-110 T 11-10-2018 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Hamap MF_00054_B Elongation factor G [fusA]. 6 697 112.356 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Gene3D G3DSA:3.30.70.870 410 488 1.2E-32 T 11-10-2018 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 SUPERFAMILY SSF52540 6 288 3.46E-104 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 SUPERFAMILY SSF54980 608 695 1.58E-30 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 SUPERFAMILY SSF54980 409 486 2.73E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 2.5E-64 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 PRINTS PR00315 GTP-binding elongation factor signature 137 146 4.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 PRINTS PR00315 GTP-binding elongation factor signature 101 112 4.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 PRINTS PR00315 GTP-binding elongation factor signature 85 95 4.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 SUPERFAMILY SSF50447 255 407 1.27E-34 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 SUPERFAMILY SSF54211 484 604 1.74E-47 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 Pfam PF03764 Elongation factor G, domain IV 484 603 4.7E-49 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 dqs_3559 6b3c319636f891dc93fcefc97c5aa92b 698 SMART SM00838 605 693 1.6E-55 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like dqs_2530 15a39374b84e6a6e56da75fd55b33cfd 328 Gene3D G3DSA:1.10.8.450 254 286 5.3E-98 T 11-10-2018 dqs_2530 15a39374b84e6a6e56da75fd55b33cfd 328 Gene3D G3DSA:3.40.190.10 123 222 5.3E-98 T 11-10-2018 dqs_2530 15a39374b84e6a6e56da75fd55b33cfd 328 Pfam PF09084 NMT1/THI5 like 86 263 6.8E-14 T 11-10-2018 IPR015168 SsuA/THI5-like dqs_2530 15a39374b84e6a6e56da75fd55b33cfd 328 SUPERFAMILY SSF53850 41 284 3.23E-47 T 11-10-2018 dqs_2530 15a39374b84e6a6e56da75fd55b33cfd 328 Gene3D G3DSA:3.40.190.10 42 317 5.3E-98 T 11-10-2018 dqs_2530 15a39374b84e6a6e56da75fd55b33cfd 328 SMART SM00062 41 259 1.2E-14 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_2530 15a39374b84e6a6e56da75fd55b33cfd 328 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 42 317 1.0E-59 T 11-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 dqs_3950 6d6549d020f298cd36d60233acb89500 368 SUPERFAMILY SSF56762 31 358 1.12E-31 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3950 6d6549d020f298cd36d60233acb89500 368 Gene3D G3DSA:1.10.645.10 197 358 1.7E-15 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 SMART SM01134 72 238 4.9E-60 T 11-10-2018 dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 SUPERFAMILY SSF100950 75 236 6.98E-30 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 Pfam PF00455 DeoR C terminal sensor domain 75 236 7.1E-45 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 SMART SM00420 6 58 8.4E-11 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 SUPERFAMILY SSF46785 4 59 1.1E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.9E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.9E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 dqs_3980 16bdb6c43011bf2aadaec5fed91c73ad 258 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 6.2E-13 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Gene3D G3DSA:3.30.70.1430 46 837 1.6E-247 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Gene3D G3DSA:3.30.70.1440 690 889 1.6E-247 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Gene3D G3DSA:3.30.2090.10 185 274 1.6E-247 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 SUPERFAMILY SSF82693 143 329 7.85E-16 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 SUPERFAMILY SSF82866 305 494 5.23E-35 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 SUPERFAMILY SSF82866 825 1048 3.53E-45 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 SUPERFAMILY SSF82693 593 668 4.97E-5 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 SUPERFAMILY SSF82714 743 829 3.66E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Gene3D G3DSA:3.30.2090.10 741 829 1.6E-247 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Pfam PF00873 AcrB/AcrD/AcrF family 12 1042 1.6E-159 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 SUPERFAMILY SSF82693 46 142 5.76E-21 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Gene3D G3DSA:1.20.1640.10 16 510 1.6E-247 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 PRINTS PR00702 Acriflavin resistance protein family signature 44 62 3.3E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 PRINTS PR00702 Acriflavin resistance protein family signature 443 466 3.3E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 3.3E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 3.3E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 PRINTS PR00702 Acriflavin resistance protein family signature 16 40 3.3E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.3E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Gene3D G3DSA:3.30.70.1430 591 689 1.6E-247 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Gene3D G3DSA:3.30.70.1320 142 332 1.6E-247 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 Gene3D G3DSA:1.20.1640.10 536 1041 1.6E-247 T 11-10-2018 dqs_0918 2151dc16bab6e3944f01c1603e651147 1072 SUPERFAMILY SSF82714 191 271 2.22E-12 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0580 23c1e46a89b4b90d483d0e757813b828 353 Gene3D G3DSA:3.40.50.1820 59 328 2.0E-43 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0580 23c1e46a89b4b90d483d0e757813b828 353 SUPERFAMILY SSF53474 65 137 7.02E-16 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0580 23c1e46a89b4b90d483d0e757813b828 353 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 67 261 1.8E-33 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 dqs_0580 23c1e46a89b4b90d483d0e757813b828 353 SUPERFAMILY SSF53474 157 341 3.35E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0580 23c1e46a89b4b90d483d0e757813b828 353 Pfam PF10503 Esterase PHB depolymerase 67 258 2.5E-48 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 Gene3D G3DSA:3.40.50.620 4 185 1.2E-64 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 Pfam PF01687 Riboflavin kinase 183 306 6.7E-37 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 Gene3D G3DSA:2.40.30.30 187 312 7.4E-38 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 SUPERFAMILY SSF82114 173 309 1.05E-42 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 PIRSF PIRSF004491 1 313 6.1E-102 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 17 306 6.9E-96 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 SUPERFAMILY SSF52374 15 174 4.79E-39 T 11-10-2018 dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 SMART SM00904 182 307 4.0E-61 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 dqs_1321 00e62858e865985fc7e73355c0dd09b7 332 Pfam PF06574 FAD synthetase 12 165 3.0E-54 T 11-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 SMART SM01086 335 431 3.5E-18 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 2.5E-202 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 98 5.5E-6 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 Gene3D G3DSA:1.10.8.60 335 440 7.5E-35 T 11-10-2018 dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 42.611 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 405 1.1E-4 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 SUPERFAMILY SSF52540 3 438 4.26E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 SMART SM00382 49 332 4.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0435 d9fb7ba7d988642b1b5b909838c43df9 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 191 329 2.8E-39 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_3920 22c7ee46b39a3ac26087416fb1cb0b06 428 SUPERFAMILY SSF51338 1 406 7.29E-17 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_3920 22c7ee46b39a3ac26087416fb1cb0b06 428 Gene3D G3DSA:3.20.20.140 53 360 1.3E-160 T 11-10-2018 dqs_3920 22c7ee46b39a3ac26087416fb1cb0b06 428 Gene3D G3DSA:2.30.40.10 8 404 1.3E-160 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_3920 22c7ee46b39a3ac26087416fb1cb0b06 428 SUPERFAMILY SSF51556 52 371 5.61E-107 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_3920 22c7ee46b39a3ac26087416fb1cb0b06 428 Pfam PF07969 Amidohydrolase family 40 400 6.0E-49 T 11-10-2018 IPR013108 Amidohydrolase 3 dqs_0243 8f1a6a1fc8bfcbb8a35d931834ffd153 723 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 80 723 2.2E-116 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 dqs_0243 8f1a6a1fc8bfcbb8a35d931834ffd153 723 Pfam PF00593 TonB dependent receptor 254 720 1.8E-68 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_0243 8f1a6a1fc8bfcbb8a35d931834ffd153 723 Gene3D G3DSA:2.170.130.10 61 190 2.6E-30 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_0243 8f1a6a1fc8bfcbb8a35d931834ffd153 723 Pfam PF07715 TonB-dependent Receptor Plug Domain 79 181 2.0E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_0243 8f1a6a1fc8bfcbb8a35d931834ffd153 723 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 59 - T 11-10-2018 IPR010916 TonB box, conserved site dqs_0243 8f1a6a1fc8bfcbb8a35d931834ffd153 723 SUPERFAMILY SSF56935 42 723 5.23E-140 T 11-10-2018 dqs_0243 8f1a6a1fc8bfcbb8a35d931834ffd153 723 Gene3D G3DSA:2.40.170.20 191 723 4.6E-137 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 SUPERFAMILY SSF82693 556 653 8.11E-16 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Gene3D G3DSA:1.20.1640.10 10 503 1.6E-299 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Gene3D G3DSA:3.30.70.1440 655 852 1.6E-299 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Gene3D G3DSA:3.30.2090.10 179 269 1.6E-299 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 SUPERFAMILY SSF82693 136 324 7.85E-23 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 SUPERFAMILY SSF82693 667 836 3.14E-7 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 SUPERFAMILY SSF82714 707 790 4.71E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 SUPERFAMILY SSF82866 817 1014 1.44E-45 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Gene3D G3DSA:1.20.1640.10 504 1010 1.6E-299 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 SUPERFAMILY SSF82866 290 490 4.71E-48 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Gene3D G3DSA:3.30.70.1430 40 802 1.6E-299 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Gene3D G3DSA:3.30.70.1430 558 654 1.6E-299 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Pfam PF00873 AcrB/AcrD/AcrF family 4 1013 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Gene3D G3DSA:3.30.70.1320 133 326 1.6E-299 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 SUPERFAMILY SSF82693 40 133 1.78E-23 T 11-10-2018 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 Gene3D G3DSA:3.30.2090.10 706 794 1.6E-299 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 SUPERFAMILY SSF82714 183 266 2.49E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2464 5e0bc8ad9f31bec52b36ae3ff59d6dff 1034 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 4.0E-82 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 Pfam PF01476 LysM domain 111 157 8.9E-6 T 11-10-2018 IPR018392 LysM domain dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 SUPERFAMILY SSF48452 192 329 7.59E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 SMART SM00028 280 313 0.06 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 SMART SM00028 232 265 0.095 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 SMART SM00257 110 157 7.2E-5 T 11-10-2018 IPR018392 LysM domain dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 Gene3D G3DSA:3.10.350.10 105 161 7.8E-8 T 11-10-2018 IPR036779 LysM domain superfamily dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 Gene3D G3DSA:1.25.40.10 175 334 1.5E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 SUPERFAMILY SSF54106 108 157 7.85E-5 T 11-10-2018 dqs_0968 4ced7c5d418fe908c2c8cc3d855fc897 339 Pfam PF07719 Tetratricopeptide repeat 282 312 3.9E-5 T 11-10-2018 IPR013105 Tetratricopeptide repeat 2 dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 TIGRFAM TIGR01752 flav_long: flavodoxin 4 170 1.7E-49 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 Pfam PF00258 Flavodoxin 6 163 5.0E-24 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 PIRSF PIRSF038996 1 175 7.7E-55 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 PRINTS PR00369 Flavodoxin signature 5 18 4.0E-5 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 PRINTS PR00369 Flavodoxin signature 53 64 4.0E-5 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 PRINTS PR00369 Flavodoxin signature 84 94 4.0E-5 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 SUPERFAMILY SSF52218 3 170 3.39E-39 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 Gene3D G3DSA:3.40.50.360 3 174 7.8E-41 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_1028 ccafb8458a7718e9ae1745f56e80e10c 177 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 PRINTS PR00344 Bacterial sensor protein C-terminal signature 870 888 1.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 PRINTS PR00344 Bacterial sensor protein C-terminal signature 836 850 1.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 PRINTS PR00344 Bacterial sensor protein C-terminal signature 894 907 1.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 PRINTS PR00344 Bacterial sensor protein C-terminal signature 854 864 1.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 Gene3D G3DSA:3.30.565.10 757 912 7.6E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2556 b959001e30f5fa19900c406e0a31841a 915 Gene3D G3DSA:1.20.1730.10 31 485 2.5E-11 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily dqs_2556 b959001e30f5fa19900c406e0a31841a 915 SMART SM00388 685 752 1.3E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 Pfam PF00512 His Kinase A (phospho-acceptor) domain 686 752 1.6E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 Gene3D G3DSA:1.10.287.130 668 754 1.1E-23 T 11-10-2018 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 SUPERFAMILY SSF47384 670 753 1.37E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2556 b959001e30f5fa19900c406e0a31841a 915 SUPERFAMILY SSF55874 741 908 2.75E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2556 b959001e30f5fa19900c406e0a31841a 915 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 799 909 8.2E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2556 b959001e30f5fa19900c406e0a31841a 915 SMART SM00387 798 910 2.3E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1716 d14331440960ba00510f59a3d5c5eef6 342 Gene3D G3DSA:3.30.1360.120 12 339 1.9E-61 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 dqs_1716 d14331440960ba00510f59a3d5c5eef6 342 PIRSF PIRSF006487 8 340 1.9E-15 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 dqs_1716 d14331440960ba00510f59a3d5c5eef6 342 SUPERFAMILY SSF103025 20 260 2.83E-59 T 11-10-2018 dqs_1716 d14331440960ba00510f59a3d5c5eef6 342 Pfam PF01571 Aminomethyltransferase folate-binding domain 25 219 9.6E-15 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain dqs_1716 d14331440960ba00510f59a3d5c5eef6 342 SUPERFAMILY SSF101790 262 341 3.86E-13 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal dqs_1716 d14331440960ba00510f59a3d5c5eef6 342 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 244 319 4.2E-7 T 11-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 dqs_1716 d14331440960ba00510f59a3d5c5eef6 342 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 205 269 1.5E-26 T 11-10-2018 IPR017703 YgfZ/GcvT conserved site dqs_3962 e300937a0affe63c6d1fc355988529d0 461 Gene3D G3DSA:3.30.565.10 303 459 1.5E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3962 e300937a0affe63c6d1fc355988529d0 461 Pfam PF08448 PAS fold 70 180 4.5E-12 T 11-10-2018 IPR013656 PAS fold-4 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 SMART SM00091 64 130 3.8E-6 T 11-10-2018 IPR000014 PAS domain dqs_3962 e300937a0affe63c6d1fc355988529d0 461 Gene3D G3DSA:1.10.287.130 189 297 1.6E-25 T 11-10-2018 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 SMART SM00387 342 458 3.6E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3962 e300937a0affe63c6d1fc355988529d0 461 Gene3D G3DSA:3.30.450.20 70 188 1.3E-17 T 11-10-2018 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 455 2.2E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 401 2.2E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 2.2E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 415 2.2E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 SUPERFAMILY SSF55785 54 172 3.07E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3962 e300937a0affe63c6d1fc355988529d0 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 207 276 7.2E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 61 185 8.9E-11 T 11-10-2018 IPR000014 PAS domain dqs_3962 e300937a0affe63c6d1fc355988529d0 461 SMART SM00388 207 302 3.3E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 SUPERFAMILY SSF47384 202 245 3.92E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3962 e300937a0affe63c6d1fc355988529d0 461 SUPERFAMILY SSF55874 288 456 3.41E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3962 e300937a0affe63c6d1fc355988529d0 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 457 3.9E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Pfam PF00512 His Kinase A (phospho-acceptor) domain 370 434 1.0E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Gene3D G3DSA:1.10.287.130 336 434 2.8E-19 T 11-10-2018 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SMART SM00091 98 164 0.016 T 11-10-2018 IPR000014 PAS domain dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SMART SM00091 220 288 0.098 T 11-10-2018 IPR000014 PAS domain dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Gene3D G3DSA:3.30.450.20 85 219 1.3E-19 T 11-10-2018 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Gene3D G3DSA:3.30.450.20 220 289 7.9E-17 T 11-10-2018 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SUPERFAMILY SSF55785 228 340 7.5E-21 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Pfam PF08448 PAS fold 104 210 2.7E-16 T 11-10-2018 IPR013656 PAS fold-4 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 585 2.9E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SMART SM00388 368 436 8.2E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Pfam PF08447 PAS fold 243 330 5.3E-20 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SMART SM00387 477 588 1.3E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 216 344 1.3E-11 T 11-10-2018 IPR000014 PAS domain dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 95 215 3.6E-10 T 11-10-2018 IPR000014 PAS domain dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SUPERFAMILY SSF55785 89 206 3.38E-14 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SMART SM00086 165 208 32.0 T 11-10-2018 IPR001610 PAC motif dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SMART SM00086 295 337 2.7E-7 T 11-10-2018 IPR001610 PAC motif dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SUPERFAMILY SSF47384 354 435 2.75E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Gene3D G3DSA:2.10.70.100 292 335 5.7E-15 T 11-10-2018 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 Gene3D G3DSA:3.30.565.10 439 586 1.3E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 SUPERFAMILY SSF55874 425 584 8.38E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 529 9.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 9.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1710 5ca741f4a0d4e1919927acd1ee4c3d87 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 585 9.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3614 ef5fbb022fccb32ba5b60e221f278516 706 SUPERFAMILY SSF53474 32 232 1.39E-5 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 Pfam PF00691 OmpA family 124 217 5.8E-22 T 11-10-2018 IPR006665 OmpA-like domain dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 PRINTS PR01022 Outer membrane protein A signature 113 128 1.1E-7 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 PRINTS PR01022 Outer membrane protein A signature 179 198 1.1E-7 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 PRINTS PR01022 Outer membrane protein A signature 213 226 1.1E-7 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 ProSitePatterns PS01068 OmpA-like domain. 157 201 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 SUPERFAMILY SSF103088 117 234 2.75E-35 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 Gene3D G3DSA:3.30.1330.60 100 238 1.8E-49 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 PRINTS PR01021 OMPA domain signature 125 147 9.6E-21 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 PRINTS PR01021 OMPA domain signature 155 170 9.6E-21 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_2748 fe740966a053f80f59e138f2b1daf8e0 238 PRINTS PR01021 OMPA domain signature 170 186 9.6E-21 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_3766 d4959288c2908189d9887bb23e6d473e 370 Gene3D G3DSA:3.40.50.720 175 313 2.0E-154 T 11-10-2018 dqs_3766 d4959288c2908189d9887bb23e6d473e 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 155 3.6E-25 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 dqs_3766 d4959288c2908189d9887bb23e6d473e 370 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 dqs_3766 d4959288c2908189d9887bb23e6d473e 370 Gene3D G3DSA:3.90.180.10 7 365 2.0E-154 T 11-10-2018 dqs_3766 d4959288c2908189d9887bb23e6d473e 370 SUPERFAMILY SSF51735 161 334 3.31E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3766 d4959288c2908189d9887bb23e6d473e 370 SUPERFAMILY SSF50129 320 370 2.26E-10 T 11-10-2018 IPR011032 GroES-like superfamily dqs_3766 d4959288c2908189d9887bb23e6d473e 370 SUPERFAMILY SSF50129 2 185 2.28E-74 T 11-10-2018 IPR011032 GroES-like superfamily dqs_3766 d4959288c2908189d9887bb23e6d473e 370 Pfam PF00107 Zinc-binding dehydrogenase 198 325 2.4E-24 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 dqs_3766 d4959288c2908189d9887bb23e6d473e 370 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 7.1E-223 T 11-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 dqs_3766 d4959288c2908189d9887bb23e6d473e 370 SMART SM00829 11 368 0.007 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 Pfam PF00023 Ankyrin repeat 224 255 3.6E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 Gene3D G3DSA:3.40.250.10 13 119 1.3E-16 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 SUPERFAMILY SSF48403 138 273 4.04E-30 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 SMART SM00450 24 119 1.6E-10 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 SMART SM00248 224 253 0.014 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 SMART SM00248 158 187 0.27 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 SMART SM00248 191 220 0.0074 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 Pfam PF12796 Ankyrin repeats (3 copies) 137 221 8.8E-10 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 Pfam PF00581 Rhodanese-like domain 35 115 6.5E-10 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 SUPERFAMILY SSF52821 6 116 1.31E-20 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2411 ebed1eb9319713caa4ad5b0af6dd4cb5 279 Gene3D G3DSA:1.25.40.20 120 279 2.3E-32 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 SMART SM00448 22 133 9.7E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 Gene3D G3DSA:3.40.50.300 151 333 2.7E-63 T 11-10-2018 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 Gene3D G3DSA:3.40.50.2300 22 140 1.9E-29 T 11-10-2018 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 Pfam PF00158 Sigma-54 interaction domain 163 329 6.1E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 SUPERFAMILY SSF52172 22 208 1.24E-38 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 SUPERFAMILY SSF46689 375 461 2.06E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 Pfam PF00072 Response regulator receiver domain 24 133 1.5E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 SUPERFAMILY SSF52540 162 393 3.27E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 Gene3D G3DSA:1.10.10.60 406 459 2.0E-14 T 11-10-2018 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 SMART SM00382 183 326 7.5E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 Gene3D G3DSA:1.10.8.60 334 405 3.9E-18 T 11-10-2018 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 376 385 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 Pfam PF02954 Bacterial regulatory protein, Fis family 419 459 6.5E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3636 db441de58ad8e81f9da6446cc86e597b 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 249 264 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 7 505 2.2E-254 T 11-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 SUPERFAMILY SSF55021 412 505 9.16E-27 T 11-10-2018 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 309 4.8E-82 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 Gene3D G3DSA:3.40.50.1100 17 320 3.3E-143 T 11-10-2018 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 Gene3D G3DSA:3.40.50.1100 53 149 3.3E-143 T 11-10-2018 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 Gene3D G3DSA:3.40.1020.10 331 506 2.0E-74 T 11-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 421 505 1.9E-22 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 322 411 2.8E-25 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 45 58 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 SUPERFAMILY SSF55021 329 415 8.79E-28 T 11-10-2018 dqs_0510 403d6914af2b0317ef8242c3f4a834c6 506 SUPERFAMILY SSF53686 7 358 5.24E-104 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Pfam PF08448 PAS fold 498 606 5.6E-20 T 11-10-2018 IPR013656 PAS fold-4 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Pfam PF08448 PAS fold 341 451 2.1E-10 T 11-10-2018 IPR013656 PAS fold-4 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SMART SM00086 411 453 7.5 T 11-10-2018 IPR001610 PAC motif dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SMART SM00086 563 604 16.0 T 11-10-2018 IPR001610 PAC motif dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SMART SM00388 631 698 2.0E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Gene3D G3DSA:1.10.287.130 620 698 3.0E-20 T 11-10-2018 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SUPERFAMILY SSF55785 480 602 6.46E-21 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 744 855 9.4E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 PRINTS PR00344 Bacterial sensor protein C-terminal signature 781 795 6.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 PRINTS PR00344 Bacterial sensor protein C-terminal signature 799 809 6.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 PRINTS PR00344 Bacterial sensor protein C-terminal signature 841 854 6.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 PRINTS PR00344 Bacterial sensor protein C-terminal signature 816 834 6.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SMART SM00091 490 557 3.4E-6 T 11-10-2018 IPR000014 PAS domain dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SMART SM00091 334 399 0.015 T 11-10-2018 IPR000014 PAS domain dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SMART SM00448 880 995 2.5E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SUPERFAMILY SSF52172 881 1002 3.98E-20 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 333 451 3.5E-6 T 11-10-2018 IPR000014 PAS domain dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 486 611 3.9E-20 T 11-10-2018 IPR000014 PAS domain dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Gene3D G3DSA:3.30.450.20 476 614 5.7E-30 T 11-10-2018 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SMART SM00387 744 857 1.9E-41 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Pfam PF00512 His Kinase A (phospho-acceptor) domain 631 697 3.2E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SUPERFAMILY SSF47384 617 699 4.9E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Gene3D G3DSA:3.30.565.10 699 859 2.3E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SUPERFAMILY SSF55874 687 855 1.11E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Gene3D G3DSA:3.40.50.2300 879 1014 2.3E-20 T 11-10-2018 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Gene3D G3DSA:3.30.450.20 323 450 6.9E-17 T 11-10-2018 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 Pfam PF00072 Response regulator receiver domain 883 995 3.4E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1966 35d5cfd5a8f6ab2d577c2675d5034514 1014 SUPERFAMILY SSF55785 322 451 1.36E-15 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Gene3D G3DSA:3.40.50.261 135 294 4.0E-54 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 SUPERFAMILY SSF52210 134 300 3.66E-44 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Gene3D G3DSA:3.30.470.20 491 702 3.8E-77 T 11-10-2018 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 SUPERFAMILY SSF52210 299 456 1.57E-47 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Pfam PF13549 ATP-grasp domain 483 704 4.1E-84 T 11-10-2018 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Gene3D G3DSA:3.40.630.30 721 890 5.8E-40 T 11-10-2018 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Pfam PF13380 CoA binding domain 14 139 3.0E-24 T 11-10-2018 IPR003781 CoA-binding GO:0048037 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Pfam PF00583 Acetyltransferase (GNAT) family 788 875 8.3E-7 T 11-10-2018 IPR000182 GNAT domain dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 156 293 4.8E-52 T 11-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain dqs_1811 609632c94868b63fe274c0097eae2c1e 895 SUPERFAMILY SSF55729 737 881 4.43E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Gene3D G3DSA:3.40.50.261 298 465 3.4E-58 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Gene3D G3DSA:3.30.1490.20 509 586 3.8E-77 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 SUPERFAMILY SSF51735 3 144 1.73E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1811 609632c94868b63fe274c0097eae2c1e 895 Gene3D G3DSA:3.40.50.720 5 134 1.2E-42 T 11-10-2018 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 SUPERFAMILY SSF56059 489 706 8.11E-43 T 11-10-2018 dqs_1811 609632c94868b63fe274c0097eae2c1e 895 SMART SM00881 10 105 6.9E-36 T 11-10-2018 IPR003781 CoA-binding GO:0048037 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Gene3D G3DSA:3.40.50.2300 411 550 2.8E-15 T 11-10-2018 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Pfam PF08447 PAS fold 59 144 3.8E-9 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Gene3D G3DSA:1.10.287.130 147 234 9.4E-31 T 11-10-2018 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SMART SM00073 731 828 5.1E-5 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Gene3D G3DSA:3.30.565.10 235 400 4.4E-54 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Pfam PF01627 Hpt domain 740 824 1.4E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 352 4.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 4.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 377 4.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 396 4.5E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Pfam PF00512 His Kinase A (phospho-acceptor) domain 171 236 1.2E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SUPERFAMILY SSF52172 569 697 1.32E-40 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SUPERFAMILY SSF47384 157 237 1.18E-23 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Gene3D G3DSA:1.20.120.160 720 827 1.1E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Gene3D G3DSA:3.40.50.2300 564 696 9.5E-46 T 11-10-2018 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Gene3D G3DSA:3.30.450.20 26 146 7.7E-18 T 11-10-2018 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SUPERFAMILY SSF52172 412 533 2.28E-18 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SUPERFAMILY SSF55785 44 152 6.28E-13 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SMART SM00387 283 399 2.6E-41 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Pfam PF00072 Response regulator receiver domain 572 693 1.2E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Pfam PF00072 Response regulator receiver domain 423 532 5.6E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SMART SM00388 171 236 6.4E-27 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SUPERFAMILY SSF55874 225 397 3.41E-48 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SMART SM00448 570 692 3.5E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SMART SM00448 414 532 5.5E-8 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 SUPERFAMILY SSF47226 675 818 1.26E-22 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_2736 ad56c77a0e5367c147e3798f53395a03 831 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 283 398 2.0E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_4045 824fcf8a6416fde746c39c1ebf881c75 623 PIRSF PIRSF028304 1 623 1.1E-189 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like dqs_4045 824fcf8a6416fde746c39c1ebf881c75 623 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 622 5.4E-196 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like dqs_4045 824fcf8a6416fde746c39c1ebf881c75 623 Pfam PF05947 Type VI secretion system, TssF 6 621 8.7E-222 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like dqs_2519 9912f3d2816658bba5b273fadf28b34c 420 Gene3D G3DSA:3.20.20.30 11 415 6.3E-104 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 dqs_2519 9912f3d2816658bba5b273fadf28b34c 420 Pfam PF00296 Luciferase-like monooxygenase 8 381 2.4E-76 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 dqs_2519 9912f3d2816658bba5b273fadf28b34c 420 SUPERFAMILY SSF51679 21 407 8.36E-80 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SUPERFAMILY SSF48452 451 884 4.07E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SUPERFAMILY SSF48452 1374 1565 2.1E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:3.40.50.11380 295 645 8.9E-143 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:1.25.40.10 686 947 7.1E-35 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:1.25.40.10 1353 1609 3.4E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:1.25.40.10 126 242 3.1E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:1.25.40.10 21 125 2.5E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:3.40.50.2000 1810 1988 1.1E-135 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:3.40.50.2000 1138 1316 1.5E-141 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:3.40.50.2000 460 638 8.9E-143 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13432 Tetratricopeptide repeat 798 860 8.6E-8 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13432 Tetratricopeptide repeat 162 216 0.0017 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13432 Tetratricopeptide repeat 1374 1425 2.4E-6 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13432 Tetratricopeptide repeat 23 78 1.7E-4 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13432 Tetratricopeptide repeat 1516 1560 1.7E-4 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13432 Tetratricopeptide repeat 699 758 1.1E-4 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 1465 1498 24.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 49 82 300.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 151 184 46.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 185 218 9.7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 826 859 27.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 83 116 37.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 1431 1464 40.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 1533 1566 0.0022 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 860 893 380.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 1397 1430 4.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 758 791 0.027 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 724 757 9.4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 1499 1532 72.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SMART SM00028 792 825 100.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:3.40.50.11380 971 1323 1.5E-141 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 SUPERFAMILY SSF48452 24 215 1.83E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Gene3D G3DSA:3.40.50.11380 1643 1994 1.1E-135 T 11-10-2018 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13844 Glycosyl transferase family 41 1652 1800 3.1E-37 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13844 Glycosyl transferase family 41 461 655 2.1E-52 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13844 Glycosyl transferase family 41 980 1132 5.2E-43 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13844 Glycosyl transferase family 41 1811 2006 1.6E-52 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13844 Glycosyl transferase family 41 302 454 4.5E-40 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 dqs_3489 0eceb90f8d60b52e8451706b8bbf0fd0 2021 Pfam PF13844 Glycosyl transferase family 41 1141 1333 2.6E-50 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 dqs_0476 98721ca05b5567973e48cef544cd1667 678 SUPERFAMILY SSF48179 599 654 3.91E-8 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_0476 98721ca05b5567973e48cef544cd1667 678 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 491 580 2.9E-20 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_0476 98721ca05b5567973e48cef544cd1667 678 Gene3D G3DSA:1.10.1040.50 494 674 9.4E-41 T 11-10-2018 dqs_0476 98721ca05b5567973e48cef544cd1667 678 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 313 488 1.7E-45 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_0476 98721ca05b5567973e48cef544cd1667 678 Pfam PF00378 Enoyl-CoA hydratase/isomerase 35 209 1.4E-26 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_0476 98721ca05b5567973e48cef544cd1667 678 Gene3D G3DSA:3.90.226.10 11 305 1.9E-64 T 11-10-2018 dqs_0476 98721ca05b5567973e48cef544cd1667 678 SUPERFAMILY SSF51735 312 490 1.08E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0476 98721ca05b5567973e48cef544cd1667 678 SUPERFAMILY SSF48179 490 582 8.5E-26 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_0476 98721ca05b5567973e48cef544cd1667 678 Gene3D G3DSA:3.40.50.720 306 493 1.0E-51 T 11-10-2018 dqs_0476 98721ca05b5567973e48cef544cd1667 678 SUPERFAMILY SSF52096 11 259 3.02E-50 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_2367 7def804df7cc4f764f7d437067a82058 490 Pfam PF13440 Polysaccharide biosynthesis protein 34 327 2.0E-47 T 11-10-2018 dqs_2039 906e23cf091c56de36c1c999b6f485de 277 TIGRFAM TIGR03465 HpnD: squalene synthase HpnD 10 275 3.2E-121 T 11-10-2018 IPR017828 Squalene synthase HpnD-like GO:0016117|GO:0016767 dqs_2039 906e23cf091c56de36c1c999b6f485de 277 Pfam PF00494 Squalene/phytoene synthase 13 264 2.1E-82 T 11-10-2018 dqs_2039 906e23cf091c56de36c1c999b6f485de 277 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 152 177 - T 11-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 dqs_2039 906e23cf091c56de36c1c999b6f485de 277 Gene3D G3DSA:1.10.600.10 2 272 7.9E-91 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily dqs_2039 906e23cf091c56de36c1c999b6f485de 277 SUPERFAMILY SSF48576 3 276 4.32E-94 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily dqs_0688 2500c6aecc86ea0d66b80022070c55d3 240 Gene3D G3DSA:3.90.850.10 18 237 9.1E-74 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_0688 2500c6aecc86ea0d66b80022070c55d3 240 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 31 234 1.7E-45 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 dqs_0688 2500c6aecc86ea0d66b80022070c55d3 240 SUPERFAMILY SSF56529 26 235 8.24E-62 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_1381 7082c610166888f7331f365438db9abe 337 Gene3D G3DSA:2.10.230.10 115 171 6.5E-23 T 11-10-2018 dqs_1381 7082c610166888f7331f365438db9abe 337 Gene3D G3DSA:2.60.260.20 218 294 5.3E-10 T 11-10-2018 dqs_1381 7082c610166888f7331f365438db9abe 337 SUPERFAMILY SSF49493 224 305 4.71E-6 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 dqs_1381 7082c610166888f7331f365438db9abe 337 Pfam PF01556 DnaJ C terminal domain 91 290 2.1E-16 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal dqs_1381 7082c610166888f7331f365438db9abe 337 PRINTS PR00625 DnaJ domain signature 4 22 1.6E-8 T 11-10-2018 IPR001623 DnaJ domain dqs_1381 7082c610166888f7331f365438db9abe 337 PRINTS PR00625 DnaJ domain signature 38 58 1.6E-8 T 11-10-2018 IPR001623 DnaJ domain dqs_1381 7082c610166888f7331f365438db9abe 337 PRINTS PR00625 DnaJ domain signature 22 37 1.6E-8 T 11-10-2018 IPR001623 DnaJ domain dqs_1381 7082c610166888f7331f365438db9abe 337 SUPERFAMILY SSF49493 82 232 1.96E-14 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 dqs_1381 7082c610166888f7331f365438db9abe 337 SUPERFAMILY SSF57938 107 174 9.81E-12 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily dqs_1381 7082c610166888f7331f365438db9abe 337 SMART SM00271 1 58 5.1E-17 T 11-10-2018 IPR001623 DnaJ domain dqs_1381 7082c610166888f7331f365438db9abe 337 SUPERFAMILY SSF46565 2 54 5.1E-16 T 11-10-2018 IPR036869 Chaperone J-domain superfamily dqs_1381 7082c610166888f7331f365438db9abe 337 Gene3D G3DSA:1.10.287.110 1 60 1.2E-16 T 11-10-2018 IPR036869 Chaperone J-domain superfamily dqs_1381 7082c610166888f7331f365438db9abe 337 Pfam PF00226 DnaJ domain 2 53 4.5E-14 T 11-10-2018 IPR001623 DnaJ domain dqs_1381 7082c610166888f7331f365438db9abe 337 Gene3D G3DSA:2.60.260.20 85 212 6.5E-23 T 11-10-2018 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 SMART SM00283 445 678 1.2E-67 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 SMART SM00304 210 262 3.4E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 SMART SM00304 301 353 2.2 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 SMART SM00304 392 444 0.0036 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 SUPERFAMILY SSF58104 412 679 3.27E-63 T 11-10-2018 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 Gene3D G3DSA:1.20.1480.50 172 266 2.0E-13 T 11-10-2018 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 Gene3D G3DSA:1.10.287.950 391 680 2.5E-71 T 11-10-2018 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 Pfam PF00672 HAMP domain 210 257 3.0E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 505 662 9.7E-35 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 180 9.8E-20 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain dqs_0417 2a05deb5e3b6664eaf82775bb7cc515f 724 SUPERFAMILY SSF158472 210 261 2.62E-7 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 15 829 5.3E-289 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Gene3D G3DSA:3.30.230.10 246 425 8.0E-69 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Pfam PF00204 DNA gyrase B 246 423 3.6E-57 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 SMART SM00387 41 201 1.6E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 12 829 98.013 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Gene3D G3DSA:3.40.50.670 431 603 1.7E-73 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 759 818 3.3E-29 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Gene3D G3DSA:3.30.565.10 12 245 3.2E-89 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 160 2.7E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 798 814 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 15 25 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 221 234 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 782 794 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 407 427 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 245 267 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 503 512 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 393 407 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 206 221 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 275 293 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR01159 DNA gyrase subunit B signature 345 361 9.9E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 ProSitePatterns PS00177 DNA topoisomerase II signature. 455 463 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 SUPERFAMILY SSF55874 15 241 2.1E-65 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0003 99b4970edba89b969405b8ddf0168c79 829 SUPERFAMILY SSF56719 427 819 2.48E-86 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 SUPERFAMILY SSF54211 246 425 2.09E-54 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Pfam PF01751 Toprim domain 452 564 7.0E-19 T 11-10-2018 IPR006171 TOPRIM domain dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 301 314 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 520 536 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 45 60 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 453 467 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 127 141 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 538 555 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 558 570 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 80 93 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 PRINTS PR00418 DNA topoisomerase II family signature 761 777 3.2E-68 T 11-10-2018 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 SMART SM00433 45 822 3.8E-254 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_0003 99b4970edba89b969405b8ddf0168c79 829 Gene3D G3DSA:3.40.50.670 716 828 1.0E-25 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 Pfam PF02357 Transcription termination factor nusG 3 108 4.5E-29 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 Gene3D G3DSA:3.30.70.940 1 117 1.1E-48 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 11-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 5.7E-70 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 SMART SM00739 123 150 8.2E-4 T 11-10-2018 IPR005824 KOW dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 Gene3D G3DSA:2.30.30.30 118 176 3.4E-24 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 25.73 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 SUPERFAMILY SSF82679 3 113 2.88E-40 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 SMART SM00738 2 111 2.6E-51 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 8.2E-20 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 8.2E-20 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 8.2E-20 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 dqs_3568 48e40374394945c4c38f8a112fd9f78b 177 SUPERFAMILY SSF50104 121 176 1.0E-18 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily dqs_3309 eb98d24b7576c2421188205eed9a6fec 404 Pfam PF02687 FtsX-like permease family 295 395 1.6E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_3309 eb98d24b7576c2421188205eed9a6fec 404 Pfam PF12704 MacB-like periplasmic core domain 17 238 3.7E-17 T 11-10-2018 IPR025857 MacB-like periplasmic core domain dqs_1049 bd8feff05de4341dcd5e55ad394023a1 228 SUPERFAMILY SSF52172 1 123 6.69E-39 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1049 bd8feff05de4341dcd5e55ad394023a1 228 SMART SM00862 144 217 2.1E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_1049 bd8feff05de4341dcd5e55ad394023a1 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 217 3.2E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_1049 bd8feff05de4341dcd5e55ad394023a1 228 SUPERFAMILY SSF46894 118 218 1.64E-25 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_1049 bd8feff05de4341dcd5e55ad394023a1 228 Gene3D G3DSA:1.10.10.10 122 227 1.9E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1049 bd8feff05de4341dcd5e55ad394023a1 228 Gene3D G3DSA:3.40.50.2300 1 121 4.3E-38 T 11-10-2018 dqs_1049 bd8feff05de4341dcd5e55ad394023a1 228 Pfam PF00072 Response regulator receiver domain 3 112 3.3E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1049 bd8feff05de4341dcd5e55ad394023a1 228 SMART SM00448 1 112 4.1E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1981 bb4281e9d6a482cfd47edefdb31e7200 460 Gene3D G3DSA:1.10.760.10 336 460 1.3E-22 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1981 bb4281e9d6a482cfd47edefdb31e7200 460 SUPERFAMILY SSF48695 228 383 4.44E-5 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily dqs_1981 bb4281e9d6a482cfd47edefdb31e7200 460 SUPERFAMILY SSF46626 346 460 6.19E-24 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_4037 607c9115b6ed1e50e2f3c2faadca21bf 172 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 19 152 3.3E-37 T 11-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN dqs_4037 607c9115b6ed1e50e2f3c2faadca21bf 172 Gene3D G3DSA:2.60.40.4150 30 172 1.5E-40 T 11-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily dqs_4037 607c9115b6ed1e50e2f3c2faadca21bf 172 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 10 155 1.5E-38 T 11-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN dqs_1633 d9d9d9696a962532960ba26542c01080 235 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 9 234 2.3E-97 T 11-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 dqs_1633 d9d9d9696a962532960ba26542c01080 235 SMART SM00382 45 233 1.8E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1633 d9d9d9696a962532960ba26542c01080 235 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1633 d9d9d9696a962532960ba26542c01080 235 Pfam PF00005 ABC transporter 38 184 1.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1633 d9d9d9696a962532960ba26542c01080 235 Gene3D G3DSA:3.40.50.300 7 235 7.7E-61 T 11-10-2018 dqs_1633 d9d9d9696a962532960ba26542c01080 235 SUPERFAMILY SSF52540 10 235 6.65E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Pfam PF08448 PAS fold 22 145 5.2E-10 T 11-10-2018 IPR013656 PAS fold-4 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Pfam PF08448 PAS fold 619 719 2.0E-14 T 11-10-2018 IPR013656 PAS fold-4 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SMART SM00091 613 679 3.1E-9 T 11-10-2018 IPR000014 PAS domain dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SMART SM00091 16 82 0.0034 T 11-10-2018 IPR000014 PAS domain dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SMART SM00448 476 588 1.2E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SMART SM00267 714 886 5.5E-62 T 11-10-2018 IPR000160 GGDEF domain dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Pfam PF00563 EAL domain 902 1134 9.7E-68 T 11-10-2018 IPR001633 EAL domain dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Pfam PF00512 His Kinase A (phospho-acceptor) domain 201 267 2.7E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 722 884 2.3E-46 T 11-10-2018 IPR000160 GGDEF domain dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Gene3D G3DSA:3.30.450.20 607 717 2.4E-26 T 11-10-2018 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Gene3D G3DSA:3.20.20.450 899 1148 3.2E-94 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SUPERFAMILY SSF47384 185 268 6.08E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Gene3D G3DSA:3.30.450.20 16 150 2.6E-31 T 11-10-2018 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SMART SM00052 896 1139 5.6E-109 T 11-10-2018 IPR001633 EAL domain dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SUPERFAMILY SSF55874 256 422 3.8E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SUPERFAMILY SSF52172 475 634 1.21E-38 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 613 723 1.6E-13 T 11-10-2018 IPR000014 PAS domain dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Gene3D G3DSA:3.30.565.10 268 425 1.5E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Pfam PF00072 Response regulator receiver domain 478 588 2.1E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Gene3D G3DSA:1.10.287.130 186 267 5.9E-23 T 11-10-2018 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SUPERFAMILY SSF55073 730 887 2.07E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SUPERFAMILY SSF55785 604 716 1.54E-16 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SUPERFAMILY SSF55785 17 143 1.68E-9 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Gene3D G3DSA:3.40.50.2300 466 605 1.4E-38 T 11-10-2018 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Pfam PF00990 Diguanylate cyclase, GGDEF domain 725 881 8.0E-52 T 11-10-2018 IPR000160 GGDEF domain dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 402 3.1E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 421 3.1E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 PRINTS PR00344 Bacterial sensor protein C-terminal signature 349 363 3.1E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 377 3.1E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 319 422 3.0E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SMART SM00387 313 424 9.4E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SUPERFAMILY SSF141868 901 1147 5.1E-83 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 Gene3D G3DSA:3.30.70.270 720 898 2.2E-62 T 11-10-2018 dqs_2682 4d00fc88217a8c243c6007eaa9b58fb5 1149 SMART SM00388 200 267 1.4E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 Gene3D G3DSA:2.20.28.10 3 63 3.6E-25 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 80 102 8.2E-14 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 220 245 8.2E-14 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 347 354 8.2E-14 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 Pfam PF00301 Rubredoxin 12 57 7.6E-22 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 Gene3D G3DSA:3.50.50.60 184 318 1.8E-66 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2624 53a05f8220fa019cfef071635f9c2657 449 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 81 354 1.1E-40 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 Gene3D G3DSA:3.50.50.60 82 354 1.8E-66 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2624 53a05f8220fa019cfef071635f9c2657 449 SUPERFAMILY SSF51905 60 381 2.04E-33 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 220 238 6.4E-18 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 6.4E-18 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 81 100 6.4E-18 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 332 354 6.4E-18 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 SUPERFAMILY SSF57802 8 62 2.52E-20 T 11-10-2018 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 ProSitePatterns PS00202 Rubredoxin signature. 41 51 - T 11-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00163 Rubredoxin signature 11 27 3.1E-8 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_2624 53a05f8220fa019cfef071635f9c2657 449 PRINTS PR00163 Rubredoxin signature 41 57 3.1E-8 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 1.3E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 Pfam PF03466 LysR substrate binding domain 93 291 3.0E-26 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 Gene3D G3DSA:3.40.190.290 95 290 1.3E-35 T 11-10-2018 dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 SUPERFAMILY SSF53850 93 295 5.58E-32 T 11-10-2018 dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 SUPERFAMILY SSF46785 7 115 2.99E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2497 e0164bfa889b0e774e786520b6b08ddc 298 Gene3D G3DSA:1.10.10.10 8 88 4.1E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1522 cd99b4e73cfd42b8e7e0d7c8d0376df3 201 SUPERFAMILY SSF143243 8 183 5.1E-56 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1522 cd99b4e73cfd42b8e7e0d7c8d0376df3 201 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 87 148 1.0E-23 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1522 cd99b4e73cfd42b8e7e0d7c8d0376df3 201 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 31 159 3.1E-39 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1522 cd99b4e73cfd42b8e7e0d7c8d0376df3 201 Gene3D G3DSA:3.30.460.80 1 140 7.2E-43 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1522 cd99b4e73cfd42b8e7e0d7c8d0376df3 201 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 33 161 1.1E-41 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1522 cd99b4e73cfd42b8e7e0d7c8d0376df3 201 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 121 142 - T 11-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1522 cd99b4e73cfd42b8e7e0d7c8d0376df3 201 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 8 168 34.09 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0616 1ad8acc0d9daeaa4e00049243d9241c4 546 Gene3D G3DSA:3.40.50.300 31 263 5.5E-11 T 11-10-2018 dqs_0616 1ad8acc0d9daeaa4e00049243d9241c4 546 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 377 512 1.0E-31 T 11-10-2018 IPR006517 Archaeophage PsiM2, terminase large subunit dqs_1126 23f9b5fc4900412058c33b2ee49859a6 209 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 6 112 3.0E-44 T 11-10-2018 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 dqs_1126 23f9b5fc4900412058c33b2ee49859a6 209 Pfam PF05233 PHB accumulation regulatory domain 71 110 1.9E-18 T 11-10-2018 IPR007897 PHB accumulation regulatory dqs_1126 23f9b5fc4900412058c33b2ee49859a6 209 Pfam PF05233 PHB accumulation regulatory domain 125 161 4.6E-15 T 11-10-2018 IPR007897 PHB accumulation regulatory dqs_1126 23f9b5fc4900412058c33b2ee49859a6 209 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 7 66 1.4E-30 T 11-10-2018 IPR012909 PHA accumulation regulator DNA-binding, N-terminal dqs_3474 8d82e21d3a89ec6409bbe50fbb1441f6 251 SUPERFAMILY SSF102705 1 250 3.27E-72 T 11-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily dqs_3474 8d82e21d3a89ec6409bbe50fbb1441f6 251 Gene3D G3DSA:3.40.1390.30 97 222 2.1E-74 T 11-10-2018 dqs_3474 8d82e21d3a89ec6409bbe50fbb1441f6 251 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 250 7.5E-58 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 dqs_3474 8d82e21d3a89ec6409bbe50fbb1441f6 251 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 238 6.4E-52 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 dqs_3474 8d82e21d3a89ec6409bbe50fbb1441f6 251 Gene3D G3DSA:3.40.1390.30 17 236 2.1E-74 T 11-10-2018 dqs_3451 92e940d85438eee66eeba70a88262d53 439 Pfam PF13347 MFS/sugar transport protein 26 420 1.2E-56 T 11-10-2018 dqs_3451 92e940d85438eee66eeba70a88262d53 439 Gene3D G3DSA:1.20.1250.20 20 209 3.6E-10 T 11-10-2018 dqs_3451 92e940d85438eee66eeba70a88262d53 439 Gene3D G3DSA:1.20.1250.20 228 427 1.1E-6 T 11-10-2018 dqs_3451 92e940d85438eee66eeba70a88262d53 439 SUPERFAMILY SSF103473 23 421 7.72E-26 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 885 977 2.4E-13 T 11-10-2018 IPR010221 VCBS repeat dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 458 543 2.0E-15 T 11-10-2018 IPR010221 VCBS repeat dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1031 1107 4.9E-13 T 11-10-2018 IPR010221 VCBS repeat dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 759 841 1.2E-5 T 11-10-2018 IPR010221 VCBS repeat dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SUPERFAMILY SSF49313 1380 1482 1.04E-5 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 Gene3D G3DSA:2.60.40.60 1815 1921 9.3E-12 T 11-10-2018 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 Gene3D G3DSA:2.60.40.60 1385 1493 1.7E-9 T 11-10-2018 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 Gene3D G3DSA:2.60.40.60 1600 1706 6.2E-12 T 11-10-2018 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 Gene3D G3DSA:2.60.40.60 1922 2027 3.4E-10 T 11-10-2018 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 Gene3D G3DSA:2.60.40.60 1494 1599 6.5E-12 T 11-10-2018 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 Gene3D G3DSA:2.60.40.60 1707 1814 8.7E-12 T 11-10-2018 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SUPERFAMILY SSF49313 1480 1598 1.28E-8 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SMART SM00112 1832 1916 0.021 T 11-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SMART SM00112 1511 1595 0.026 T 11-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SMART SM00112 1404 1488 0.15 T 11-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SMART SM00112 1939 2023 0.16 T 11-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SMART SM00112 1725 1809 0.021 T 11-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SMART SM00112 1618 1702 0.026 T 11-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SUPERFAMILY SSF49313 1695 1812 5.3E-9 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SUPERFAMILY SSF141072 1249 1381 1.57E-11 T 11-10-2018 IPR038081 CalX-like domain superfamily dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SMART SM00736 2103 2204 9.5E-8 T 11-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SUPERFAMILY SSF49313 1802 1919 5.69E-9 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SUPERFAMILY SSF49313 2106 2198 9.42E-16 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SUPERFAMILY SSF49313 1908 2025 6.28E-9 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 SUPERFAMILY SSF49313 1587 1705 7.26E-9 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 dqs_2714 fd2469e282d24c42c2166df6de0364c4 2239 Gene3D G3DSA:2.60.40.10 2097 2202 1.0E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_2542 ca183b1e85181817c4c0c7f2b4651515 202 SUPERFAMILY SSF53474 2 161 1.09E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2542 ca183b1e85181817c4c0c7f2b4651515 202 Pfam PF06821 Serine hydrolase 4 164 7.7E-57 T 11-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 dqs_2542 ca183b1e85181817c4c0c7f2b4651515 202 Gene3D G3DSA:3.40.50.1820 1 172 3.7E-54 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1481 4bc65198039c202dfd4202ffa015d9dc 378 SUPERFAMILY SSF55729 177 347 5.55E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_1481 4bc65198039c202dfd4202ffa015d9dc 378 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 13 375 3.0E-149 T 11-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition dqs_1481 4bc65198039c202dfd4202ffa015d9dc 378 Gene3D G3DSA:3.40.630.30 160 328 5.1E-7 T 11-10-2018 dqs_2426 992b8bdbdf767ece9c9a412449398edf 221 SUPERFAMILY SSF51197 21 217 4.39E-61 T 11-10-2018 dqs_2426 992b8bdbdf767ece9c9a412449398edf 221 Gene3D G3DSA:2.60.120.590 19 220 1.2E-58 T 11-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily dqs_2426 992b8bdbdf767ece9c9a412449398edf 221 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 36 216 2.8E-53 T 11-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like dqs_0310 d1b1670f79670bb9240fe7576d2ec683 114 Pfam PF07883 Cupin domain 51 107 3.6E-7 T 11-10-2018 IPR013096 Cupin 2, conserved barrel dqs_0310 d1b1670f79670bb9240fe7576d2ec683 114 SUPERFAMILY SSF51182 33 111 8.91E-17 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_0310 d1b1670f79670bb9240fe7576d2ec683 114 Gene3D G3DSA:2.60.120.10 19 112 4.3E-32 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_1390 68020dad148aef27df7c6c0f2229914a 554 Pfam PF00005 ABC transporter 23 190 1.3E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1390 68020dad148aef27df7c6c0f2229914a 554 Pfam PF12848 ABC transporter 229 305 5.7E-11 T 11-10-2018 IPR032781 ABC-transporter extension domain dqs_1390 68020dad148aef27df7c6c0f2229914a 554 Gene3D G3DSA:3.40.50.300 1 284 2.6E-80 T 11-10-2018 dqs_1390 68020dad148aef27df7c6c0f2229914a 554 Pfam PF00005 ABC transporter 339 472 3.5E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1390 68020dad148aef27df7c6c0f2229914a 554 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 552 4.0E-284 T 11-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 dqs_1390 68020dad148aef27df7c6c0f2229914a 554 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1390 68020dad148aef27df7c6c0f2229914a 554 Gene3D G3DSA:3.40.50.300 285 553 7.4E-72 T 11-10-2018 dqs_1390 68020dad148aef27df7c6c0f2229914a 554 SMART SM00382 347 525 1.0E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1390 68020dad148aef27df7c6c0f2229914a 554 SMART SM00382 31 235 2.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1390 68020dad148aef27df7c6c0f2229914a 554 SUPERFAMILY SSF52540 16 241 6.25E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1390 68020dad148aef27df7c6c0f2229914a 554 SUPERFAMILY SSF52540 301 514 1.93E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2804 dbe62b3763a6ed3ca97eb6b3931d3f77 109 SUPERFAMILY SSF52833 13 99 2.08E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2804 dbe62b3763a6ed3ca97eb6b3931d3f77 109 Pfam PF00085 Thioredoxin 20 99 5.4E-12 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 dqs_2804 dbe62b3763a6ed3ca97eb6b3931d3f77 109 Gene3D G3DSA:3.40.30.10 1 105 1.7E-22 T 11-10-2018 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 SUPERFAMILY SSF54980 398 512 1.77E-32 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 SUPERFAMILY SSF54980 302 387 6.47E-14 T 11-10-2018 IPR035647 EF-G domain III/V-like dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 SUPERFAMILY SSF52540 4 206 7.08E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 Gene3D G3DSA:3.40.50.300 2 198 1.5E-67 T 11-10-2018 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 SUPERFAMILY SSF50447 151 299 7.95E-31 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 598 1.8E-293 T 11-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 Gene3D G3DSA:2.40.30.10 199 299 1.1E-30 T 11-10-2018 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 Gene3D G3DSA:2.40.50.250 482 598 5.9E-131 T 11-10-2018 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 6.9E-56 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 Gene3D G3DSA:3.30.70.240 389 481 5.9E-131 T 11-10-2018 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 Pfam PF00679 Elongation factor G C-terminus 396 482 5.6E-25 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 PRINTS PR00315 GTP-binding elongation factor signature 123 132 2.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 PRINTS PR00315 GTP-binding elongation factor signature 87 98 2.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 PRINTS PR00315 GTP-binding elongation factor signature 51 59 2.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 PRINTS PR00315 GTP-binding elongation factor signature 71 81 2.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 PRINTS PR00315 GTP-binding elongation factor signature 7 20 2.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 SMART SM00838 395 483 1.2E-4 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 Pfam PF03144 Elongation factor Tu domain 2 220 289 6.9E-11 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 Gene3D G3DSA:3.30.70.870 306 589 5.9E-131 T 11-10-2018 dqs_2154 27acbf4edf1db57fe0ff2e456728be01 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 152 1.8E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_1408 1dfef8cf74034519dd31a7f2bdd5d6a1 404 SUPERFAMILY SSF103473 7 391 3.4E-55 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_1408 1dfef8cf74034519dd31a7f2bdd5d6a1 404 Gene3D G3DSA:1.20.1250.20 3 189 7.8E-38 T 11-10-2018 dqs_1408 1dfef8cf74034519dd31a7f2bdd5d6a1 404 Pfam PF07690 Major Facilitator Superfamily 24 350 4.9E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_1408 1dfef8cf74034519dd31a7f2bdd5d6a1 404 Gene3D G3DSA:1.20.1250.20 197 394 1.4E-48 T 11-10-2018 dqs_2208 fcbbfcc6a3157c7e7a82497858e6ca2b 282 Gene3D G3DSA:3.20.20.70 122 269 1.6E-110 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2208 fcbbfcc6a3157c7e7a82497858e6ca2b 282 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 114 278 4.5E-59 T 11-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 dqs_2208 fcbbfcc6a3157c7e7a82497858e6ca2b 282 SUPERFAMILY SSF54675 4 112 4.71E-31 T 11-10-2018 dqs_2208 fcbbfcc6a3157c7e7a82497858e6ca2b 282 Gene3D G3DSA:3.90.1170.20 10 278 1.6E-110 T 11-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 dqs_2208 fcbbfcc6a3157c7e7a82497858e6ca2b 282 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 15 278 2.7E-95 T 11-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 dqs_2208 fcbbfcc6a3157c7e7a82497858e6ca2b 282 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 23 111 4.4E-26 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 dqs_2208 fcbbfcc6a3157c7e7a82497858e6ca2b 282 PIRSF PIRSF006250 5 282 2.3E-95 T 11-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 dqs_2208 fcbbfcc6a3157c7e7a82497858e6ca2b 282 SUPERFAMILY SSF51690 114 278 9.81E-60 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 dqs_0680 60892400f255b5b83875cdf5160b945e 656 Pfam PF00005 ABC transporter 39 187 6.4E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0680 60892400f255b5b83875cdf5160b945e 656 Pfam PF02687 FtsX-like permease family 563 649 3.9E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_0680 60892400f255b5b83875cdf5160b945e 656 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0680 60892400f255b5b83875cdf5160b945e 656 Gene3D G3DSA:3.40.50.300 17 276 2.5E-69 T 11-10-2018 dqs_0680 60892400f255b5b83875cdf5160b945e 656 SUPERFAMILY SSF52540 19 243 1.73E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0680 60892400f255b5b83875cdf5160b945e 656 SMART SM00382 48 235 4.5E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0680 60892400f255b5b83875cdf5160b945e 656 Pfam PF12704 MacB-like periplasmic core domain 283 501 2.5E-35 T 11-10-2018 IPR025857 MacB-like periplasmic core domain dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 Gene3D G3DSA:3.40.50.1980 29 177 4.8E-48 T 11-10-2018 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00690 Adhesin family signature 59 72 2.1E-26 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00690 Adhesin family signature 72 89 2.1E-26 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00690 Adhesin family signature 28 46 2.1E-26 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00690 Adhesin family signature 244 262 2.1E-26 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00690 Adhesin family signature 270 289 2.1E-26 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00690 Adhesin family signature 191 212 2.1E-26 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 Pfam PF01297 Zinc-uptake complex component A periplasmic 31 302 3.1E-81 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00691 Adhesin B signature 240 257 3.4E-26 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00691 Adhesin B signature 28 49 3.4E-26 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00691 Adhesin B signature 262 280 3.4E-26 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00691 Adhesin B signature 283 301 3.4E-26 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00691 Adhesin B signature 133 152 3.4E-26 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00691 Adhesin B signature 53 71 3.4E-26 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00691 Adhesin B signature 72 91 3.4E-26 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 PRINTS PR00691 Adhesin B signature 191 208 3.4E-26 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 SUPERFAMILY SSF53807 27 304 2.35E-85 T 11-10-2018 dqs_0709 91ba3145a0b6f3f8c42554ecdabdeab7 309 Gene3D G3DSA:3.40.50.1980 180 306 5.0E-44 T 11-10-2018 dqs_3848 110c961158739905c6558bba4df8301c 153 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 111 153 8.0E-8 T 11-10-2018 dqs_3848 110c961158739905c6558bba4df8301c 153 Gene3D G3DSA:1.20.120.1630 5 153 8.0E-22 T 11-10-2018 dqs_3848 110c961158739905c6558bba4df8301c 153 Pfam PF04191 Phospholipid methyltransferase 53 141 3.9E-10 T 11-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 dqs_3758 98c0efbb4702ccaa6349db82f1d4beb4 238 Pfam PF00072 Response regulator receiver domain 5 113 6.4E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3758 98c0efbb4702ccaa6349db82f1d4beb4 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 232 6.9E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_3758 98c0efbb4702ccaa6349db82f1d4beb4 238 SUPERFAMILY SSF46894 135 234 2.58E-22 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_3758 98c0efbb4702ccaa6349db82f1d4beb4 238 SMART SM00862 154 232 2.6E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_3758 98c0efbb4702ccaa6349db82f1d4beb4 238 Gene3D G3DSA:1.10.10.10 127 236 1.5E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3758 98c0efbb4702ccaa6349db82f1d4beb4 238 Gene3D G3DSA:3.40.50.2300 1 126 5.4E-37 T 11-10-2018 dqs_3758 98c0efbb4702ccaa6349db82f1d4beb4 238 SUPERFAMILY SSF52172 2 126 3.56E-41 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3758 98c0efbb4702ccaa6349db82f1d4beb4 238 SMART SM00448 3 113 6.9E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2774 99229b8d456fca89ad996b96c871245c 133 SUPERFAMILY SSF51316 1 111 2.09E-32 T 11-10-2018 IPR011057 Mss4-like superfamily dqs_2774 99229b8d456fca89ad996b96c871245c 133 Gene3D G3DSA:2.170.150.70 5 124 5.4E-34 T 11-10-2018 dqs_2774 99229b8d456fca89ad996b96c871245c 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 106 1.3E-15 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 dqs_0965 d2b2e1fa3bc799d846e7b195cdf299e5 493 SUPERFAMILY SSF109604 30 287 2.1E-44 T 11-10-2018 dqs_0965 d2b2e1fa3bc799d846e7b195cdf299e5 493 Pfam PF08668 HDOD domain 35 226 3.4E-33 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_0965 d2b2e1fa3bc799d846e7b195cdf299e5 493 Gene3D G3DSA:1.10.3210.10 30 273 1.8E-42 T 11-10-2018 dqs_0965 d2b2e1fa3bc799d846e7b195cdf299e5 493 Gene3D G3DSA:3.30.450.40 327 485 2.6E-15 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_0965 d2b2e1fa3bc799d846e7b195cdf299e5 493 SUPERFAMILY SSF55781 324 482 2.84E-12 T 11-10-2018 dqs_0158 e4578310aa3a704d5371022bf84ad21b 416 SUPERFAMILY SSF51556 116 368 6.81E-24 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_0158 e4578310aa3a704d5371022bf84ad21b 416 Gene3D G3DSA:3.20.20.140 121 383 5.1E-33 T 11-10-2018 dqs_0158 e4578310aa3a704d5371022bf84ad21b 416 Pfam PF04909 Amidohydrolase 162 349 5.4E-13 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 dqs_3279 363e24cb6db7d45bc94976612faff599 894 SUPERFAMILY SSF63737 6 195 1.7E-36 T 11-10-2018 dqs_3279 363e24cb6db7d45bc94976612faff599 894 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 566 893 4.8E-114 T 11-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal dqs_3279 363e24cb6db7d45bc94976612faff599 894 Pfam PF01433 Peptidase family M1 domain 210 453 2.6E-57 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 dqs_3279 363e24cb6db7d45bc94976612faff599 894 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 893 0.0 T 11-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 dqs_3279 363e24cb6db7d45bc94976612faff599 894 SUPERFAMILY SSF55486 207 462 2.05E-69 T 11-10-2018 dqs_3279 363e24cb6db7d45bc94976612faff599 894 Gene3D G3DSA:1.10.390.10 282 457 1.1E-65 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily dqs_3279 363e24cb6db7d45bc94976612faff599 894 Gene3D G3DSA:2.60.40.1840 458 563 8.3E-33 T 11-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily dqs_3279 363e24cb6db7d45bc94976612faff599 894 Gene3D G3DSA:1.10.1740.60 198 281 1.1E-35 T 11-10-2018 dqs_3279 363e24cb6db7d45bc94976612faff599 894 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 315 327 1.9E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 dqs_3279 363e24cb6db7d45bc94976612faff599 894 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 260 270 1.9E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 dqs_3279 363e24cb6db7d45bc94976612faff599 894 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 178 193 1.9E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 dqs_3279 363e24cb6db7d45bc94976612faff599 894 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 296 311 1.9E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 dqs_3279 363e24cb6db7d45bc94976612faff599 894 Gene3D G3DSA:1.25.50.10 565 894 4.1E-109 T 11-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily dqs_3279 363e24cb6db7d45bc94976612faff599 894 Gene3D G3DSA:2.60.40.1730 16 196 4.3E-63 T 11-10-2018 dqs_3279 363e24cb6db7d45bc94976612faff599 894 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 458 562 4.2E-29 T 11-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold dqs_0187 b4f247d496d64287fc0393b58f4bbea2 378 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 20 373 3.7E-124 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0187 b4f247d496d64287fc0393b58f4bbea2 378 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 333 357 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0187 b4f247d496d64287fc0393b58f4bbea2 378 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 14 378 25.823 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0187 b4f247d496d64287fc0393b58f4bbea2 378 Pfam PF01098 Cell cycle protein 30 373 4.0E-98 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_1641 c0da28a4171061037013212f466adb8b 182 SMART SM00479 7 180 5.1E-21 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_1641 c0da28a4171061037013212f466adb8b 182 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 43.916 T 11-10-2018 IPR022894 Oligoribonuclease GO:0000175 dqs_1641 c0da28a4171061037013212f466adb8b 182 Gene3D G3DSA:3.30.420.10 1 181 1.8E-73 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_1641 c0da28a4171061037013212f466adb8b 182 SUPERFAMILY SSF53098 2 180 4.22E-50 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_1641 c0da28a4171061037013212f466adb8b 182 Pfam PF00929 Exonuclease 9 169 3.3E-31 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 Gene3D G3DSA:3.40.50.720 1 206 8.1E-57 T 11-10-2018 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 SMART SM00984 317 426 8.4E-15 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 SUPERFAMILY SSF51735 1 193 2.66E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 401 3.2E-106 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 Gene3D G3DSA:3.40.50.720 235 438 5.7E-61 T 11-10-2018 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 298 4.0E-28 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 SUPERFAMILY SSF48179 204 299 9.52E-27 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 189 2.6E-48 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 PIRSF PIRSF500134 1 412 4.9E-99 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 PIRSF PIRSF000124 1 438 1.4E-110 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 363 7.7E-11 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 Gene3D G3DSA:1.20.5.170 207 234 5.7E-13 T 11-10-2018 dqs_3408 27b20e31b3e71ab6197a442e46cc7a71 438 SUPERFAMILY SSF52413 312 430 1.44E-19 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 dqs_2211 b297512aaaa60e144052c83700d7ebfc 442 Pfam PF00155 Aminotransferase class I and II 69 425 1.2E-46 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_2211 b297512aaaa60e144052c83700d7ebfc 442 Gene3D G3DSA:3.90.1150.10 55 432 1.6E-136 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2211 b297512aaaa60e144052c83700d7ebfc 442 SUPERFAMILY SSF53383 36 434 3.46E-96 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2211 b297512aaaa60e144052c83700d7ebfc 442 Gene3D G3DSA:3.40.640.10 87 328 1.6E-136 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2172 6d69f80fc559f918ce15c5a81c9becba 382 PIRSF PIRSF005572 3 378 6.8E-122 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 dqs_2172 6d69f80fc559f918ce15c5a81c9becba 382 Gene3D G3DSA:1.10.260.50 16 277 9.9E-131 T 11-10-2018 dqs_2172 6d69f80fc559f918ce15c5a81c9becba 382 Gene3D G3DSA:3.40.640.10 62 234 9.9E-131 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2172 6d69f80fc559f918ce15c5a81c9becba 382 Gene3D G3DSA:3.90.1150.10 6 367 9.9E-131 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2172 6d69f80fc559f918ce15c5a81c9becba 382 Pfam PF00266 Aminotransferase class-V 6 363 4.9E-63 T 11-10-2018 IPR000192 Aminotransferase class V domain dqs_2172 6d69f80fc559f918ce15c5a81c9becba 382 SUPERFAMILY SSF53383 5 368 1.04E-92 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2172 6d69f80fc559f918ce15c5a81c9becba 382 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 192 211 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site dqs_3539 e707746ae574b6a24c86fee0648bc507 174 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 171 33.307 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 dqs_3539 e707746ae574b6a24c86fee0648bc507 174 SUPERFAMILY SSF54211 87 167 7.33E-26 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_3539 e707746ae574b6a24c86fee0648bc507 174 Gene3D G3DSA:3.30.160.20 9 81 5.6E-25 T 11-10-2018 dqs_3539 e707746ae574b6a24c86fee0648bc507 174 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 18 171 8.7E-61 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 dqs_3539 e707746ae574b6a24c86fee0648bc507 174 Pfam PF03719 Ribosomal protein S5, C-terminal domain 95 165 4.2E-29 T 11-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 dqs_3539 e707746ae574b6a24c86fee0648bc507 174 SUPERFAMILY SSF54768 16 84 1.67E-20 T 11-10-2018 dqs_3539 e707746ae574b6a24c86fee0648bc507 174 ProSitePatterns PS00585 Ribosomal protein S5 signature. 36 68 - T 11-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site dqs_3539 e707746ae574b6a24c86fee0648bc507 174 Gene3D G3DSA:3.30.230.10 82 174 1.1E-35 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_3539 e707746ae574b6a24c86fee0648bc507 174 Pfam PF00333 Ribosomal protein S5, N-terminal domain 19 82 1.2E-23 T 11-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 dqs_2317 fcef1c7d92a61a122efadc10f5c29484 107 SUPERFAMILY SSF51182 14 106 4.95E-32 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2317 fcef1c7d92a61a122efadc10f5c29484 107 Pfam PF06865 Protein of unknown function (DUF1255) 15 106 6.7E-36 T 11-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 dqs_2317 fcef1c7d92a61a122efadc10f5c29484 107 Gene3D G3DSA:2.60.120.10 2 107 3.5E-40 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_2317 fcef1c7d92a61a122efadc10f5c29484 107 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 13 107 27.39 T 11-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 SUPERFAMILY SSF54292 3 92 4.59E-19 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 Pfam PF00970 Oxidoreductase FAD-binding domain 101 190 1.3E-12 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 35 43 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 77 3.3E-13 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 Gene3D G3DSA:3.40.50.80 191 327 1.6E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 Gene3D G3DSA:3.10.20.30 1 95 1.3E-18 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 SUPERFAMILY SSF63380 95 189 1.46E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 SUPERFAMILY SSF52343 194 325 5.76E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 Gene3D G3DSA:2.40.30.10 96 188 7.4E-24 T 11-10-2018 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 PRINTS PR00410 Phenol hydroxylase reductase family signature 185 194 7.6E-18 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 PRINTS PR00410 Phenol hydroxylase reductase family signature 201 220 7.6E-18 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 PRINTS PR00410 Phenol hydroxylase reductase family signature 126 138 7.6E-18 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 PRINTS PR00410 Phenol hydroxylase reductase family signature 142 149 7.6E-18 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 PRINTS PR00410 Phenol hydroxylase reductase family signature 226 235 7.6E-18 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 PRINTS PR00410 Phenol hydroxylase reductase family signature 291 299 7.6E-18 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2674 6df4aa487ad269043dcf0a8a651520a7 328 Pfam PF00175 Oxidoreductase NAD-binding domain 203 304 3.8E-18 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_1496 2a3aa665e3558c837127916e57e557ac 401 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 72 90 1.0E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1496 2a3aa665e3558c837127916e57e557ac 401 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 1.0E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1496 2a3aa665e3558c837127916e57e557ac 401 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 1.0E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1496 2a3aa665e3558c837127916e57e557ac 401 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 266 284 1.0E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1496 2a3aa665e3558c837127916e57e557ac 401 Gene3D G3DSA:3.40.50.2300 32 356 5.3E-78 T 11-10-2018 dqs_1496 2a3aa665e3558c837127916e57e557ac 401 Pfam PF13458 Periplasmic binding protein 30 385 4.8E-63 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_1496 2a3aa665e3558c837127916e57e557ac 401 SUPERFAMILY SSF53822 31 393 3.26E-82 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_1496 2a3aa665e3558c837127916e57e557ac 401 Gene3D G3DSA:3.40.50.2300 156 284 5.3E-78 T 11-10-2018 dqs_2254 5b0931007aa08281b41652fd8178927c 650 SMART SM00487 24 222 7.0E-61 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_2254 5b0931007aa08281b41652fd8178927c 650 Pfam PF03880 DbpA RNA binding domain 495 565 2.9E-20 T 11-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain dqs_2254 5b0931007aa08281b41652fd8178927c 650 Gene3D G3DSA:3.40.50.300 1 205 4.7E-74 T 11-10-2018 dqs_2254 5b0931007aa08281b41652fd8178927c 650 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site dqs_2254 5b0931007aa08281b41652fd8178927c 650 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 1 567 44.606 T 11-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 dqs_2254 5b0931007aa08281b41652fd8178927c 650 SMART SM00490 259 340 7.2E-34 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_2254 5b0931007aa08281b41652fd8178927c 650 Gene3D G3DSA:3.40.50.300 206 372 5.0E-50 T 11-10-2018 dqs_2254 5b0931007aa08281b41652fd8178927c 650 Pfam PF00271 Helicase conserved C-terminal domain 230 340 3.1E-30 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_2254 5b0931007aa08281b41652fd8178927c 650 Gene3D G3DSA:3.30.70.330 494 567 2.7E-11 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily dqs_2254 5b0931007aa08281b41652fd8178927c 650 SUPERFAMILY SSF52540 73 362 2.62E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2254 5b0931007aa08281b41652fd8178927c 650 Pfam PF00270 DEAD/DEAH box helicase 30 194 1.4E-45 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 259 363 1.5E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 Pfam PF00512 His Kinase A (phospho-acceptor) domain 158 217 1.3E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 Gene3D G3DSA:3.30.565.10 224 366 1.4E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 SMART SM00387 256 365 1.9E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 SUPERFAMILY SSF55874 217 363 2.88E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 SUPERFAMILY SSF47384 141 217 2.16E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 PRINTS PR00344 Bacterial sensor protein C-terminal signature 349 362 8.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 PRINTS PR00344 Bacterial sensor protein C-terminal signature 308 318 8.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 8.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 PRINTS PR00344 Bacterial sensor protein C-terminal signature 290 304 8.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 Gene3D G3DSA:1.10.287.130 108 219 5.6E-21 T 11-10-2018 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 SMART SM00304 104 156 3.8E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 SMART SM00388 157 218 4.2E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3759 9b47c48b08d9adb7bb5342262de72608 366 Pfam PF00672 HAMP domain 104 153 2.4E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 Gene3D G3DSA:3.30.450.20 128 232 1.4E-18 T 11-10-2018 dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 SUPERFAMILY SSF55785 254 377 6.63E-15 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 389 550 3.7E-45 T 11-10-2018 IPR000160 GGDEF domain dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 Gene3D G3DSA:3.30.70.270 385 555 6.2E-57 T 11-10-2018 dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 SMART SM00091 111 179 8.2E-5 T 11-10-2018 IPR000014 PAS domain dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 SMART SM00091 260 325 2.3E-4 T 11-10-2018 IPR000014 PAS domain dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 258 383 4.5E-7 T 11-10-2018 IPR000014 PAS domain dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 112 234 7.5E-13 T 11-10-2018 IPR000014 PAS domain dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 Pfam PF08447 PAS fold 135 216 6.1E-13 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 SMART SM00267 379 551 6.2E-57 T 11-10-2018 IPR000160 GGDEF domain dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 Pfam PF00990 Diguanylate cyclase, GGDEF domain 390 547 4.4E-46 T 11-10-2018 IPR000160 GGDEF domain dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 SMART SM00086 185 227 0.0056 T 11-10-2018 IPR001610 PAC motif dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 Pfam PF12860 PAS fold 267 382 2.5E-8 T 11-10-2018 dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 SUPERFAMILY SSF55073 395 550 2.28E-48 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 Gene3D G3DSA:3.30.450.20 252 384 1.4E-15 T 11-10-2018 dqs_2968 e970ad4badbd12dc1a3030b288ece15a 579 SUPERFAMILY SSF55785 118 229 7.73E-19 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3411 ea64235708a8553492b9135b704c993b 405 Gene3D G3DSA:3.40.50.2000 185 371 4.5E-68 T 11-10-2018 dqs_3411 ea64235708a8553492b9135b704c993b 405 SUPERFAMILY SSF53756 2 390 1.83E-77 T 11-10-2018 dqs_3411 ea64235708a8553492b9135b704c993b 405 Pfam PF00534 Glycosyl transferases group 1 201 359 4.3E-29 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_3411 ea64235708a8553492b9135b704c993b 405 Gene3D G3DSA:3.40.50.2000 7 388 4.5E-68 T 11-10-2018 dqs_3411 ea64235708a8553492b9135b704c993b 405 TIGRFAM TIGR04063 stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family 2 392 1.3E-196 T 11-10-2018 IPR024004 Glycosyltransferase family 1, Daro2409 family dqs_3411 ea64235708a8553492b9135b704c993b 405 Pfam PF13579 Glycosyl transferase 4-like domain 15 183 1.3E-26 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3985 1c623af65c6bfb2cf9a46c33e7300b91 367 Gene3D G3DSA:3.40.190.10 201 285 4.2E-6 T 11-10-2018 dqs_3985 1c623af65c6bfb2cf9a46c33e7300b91 367 Pfam PF12727 PBP superfamily domain 138 325 2.6E-49 T 11-10-2018 IPR024370 PBP domain dqs_3985 1c623af65c6bfb2cf9a46c33e7300b91 367 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 80 5.4E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3985 1c623af65c6bfb2cf9a46c33e7300b91 367 Gene3D G3DSA:3.40.190.10 140 200 4.2E-6 T 11-10-2018 dqs_3985 1c623af65c6bfb2cf9a46c33e7300b91 367 SUPERFAMILY SSF46785 14 131 3.13E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3985 1c623af65c6bfb2cf9a46c33e7300b91 367 Gene3D G3DSA:1.10.10.10 2 115 1.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3985 1c623af65c6bfb2cf9a46c33e7300b91 367 SUPERFAMILY SSF53850 196 345 8.05E-17 T 11-10-2018 dqs_3450 ba0989c2b9c4751dcd6aa3b8f2011a76 194 Pfam PF16036 Chalcone isomerase-like 36 188 3.7E-10 T 11-10-2018 IPR016087 Chalcone isomerase GO:0016872 dqs_2612 f3e000f657a207b6eee27a76796e609c 467 SMART SM00345 7 66 2.0E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2612 f3e000f657a207b6eee27a76796e609c 467 Gene3D G3DSA:3.90.1150.10 99 465 3.8E-102 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2612 f3e000f657a207b6eee27a76796e609c 467 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 3.4E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2612 f3e000f657a207b6eee27a76796e609c 467 Gene3D G3DSA:3.40.640.10 142 360 3.8E-102 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2612 f3e000f657a207b6eee27a76796e609c 467 SUPERFAMILY SSF53383 94 466 1.9E-94 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2612 f3e000f657a207b6eee27a76796e609c 467 Gene3D G3DSA:1.10.10.10 1 98 4.4E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2612 f3e000f657a207b6eee27a76796e609c 467 SUPERFAMILY SSF46785 2 70 1.05E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2612 f3e000f657a207b6eee27a76796e609c 467 Pfam PF00155 Aminotransferase class I and II 146 462 7.2E-30 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 ProSitePatterns PS00211 ABC transporters family signature. 438 452 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 Pfam PF00005 ABC transporter 328 466 3.9E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 Pfam PF00005 ABC transporter 19 178 2.5E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 SMART SM00382 26 223 3.1E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 SMART SM00382 337 510 1.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 SUPERFAMILY SSF52540 295 521 9.69E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 SUPERFAMILY SSF52540 2 257 2.42E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 Gene3D G3DSA:3.40.50.300 5 274 4.4E-55 T 11-10-2018 dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 Pfam PF16326 ABC transporter C-terminal domain 572 635 1.1E-9 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 Pfam PF12848 ABC transporter 217 296 9.0E-29 T 11-10-2018 IPR032781 ABC-transporter extension domain dqs_3896 7dd47f391564bc6da9158fdeaa2d5e2a 643 Gene3D G3DSA:3.40.50.300 275 547 1.5E-55 T 11-10-2018 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 262 270 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 236 375 1.6E-69 T 11-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 Gene3D G3DSA:3.30.300.10 12 273 5.1E-181 T 11-10-2018 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 119 129 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 SUPERFAMILY SSF55973 236 386 1.14E-69 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 SUPERFAMILY SSF55973 117 235 3.92E-52 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 Gene3D G3DSA:3.30.300.10 6 236 5.1E-181 T 11-10-2018 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 Pfam PF02772 S-adenosylmethionine synthetase, central domain 117 234 8.3E-47 T 11-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 PIRSF PIRSF000497 1 387 5.6E-175 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 SUPERFAMILY SSF55973 4 111 3.37E-45 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 Gene3D G3DSA:3.30.300.10 103 378 5.1E-181 T 11-10-2018 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 386 57.779 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 385 1.6E-185 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_0658 c98e8be0e16d3b300cdab56f4acbeb19 388 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 101 5.0E-41 T 11-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 dqs_3268 4d06fcd03dddd7697551ab60be7e16b6 352 Pfam PF02769 AIR synthase related protein, C-terminal domain 182 347 3.9E-38 T 11-10-2018 IPR010918 PurM-like, C-terminal domain dqs_3268 4d06fcd03dddd7697551ab60be7e16b6 352 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 12 340 7.5E-138 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3268 4d06fcd03dddd7697551ab60be7e16b6 352 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 12 350 46.691 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3268 4d06fcd03dddd7697551ab60be7e16b6 352 SUPERFAMILY SSF56042 176 348 5.08E-59 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_3268 4d06fcd03dddd7697551ab60be7e16b6 352 Gene3D G3DSA:3.30.1330.10 11 175 3.5E-69 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_3268 4d06fcd03dddd7697551ab60be7e16b6 352 SUPERFAMILY SSF55326 12 175 1.94E-53 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_3268 4d06fcd03dddd7697551ab60be7e16b6 352 Gene3D G3DSA:3.90.650.10 176 352 1.7E-68 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_3268 4d06fcd03dddd7697551ab60be7e16b6 352 Pfam PF00586 AIR synthase related protein, N-terminal domain 65 169 4.6E-16 T 11-10-2018 IPR016188 PurM-like, N-terminal domain dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 SUPERFAMILY SSF55874 312 476 7.86E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 SUPERFAMILY SSF47384 243 320 7.85E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 SMART SM00388 257 322 2.2E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 Gene3D G3DSA:3.30.565.10 321 476 8.9E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 Gene3D G3DSA:3.30.450.20 27 169 2.8E-5 T 11-10-2018 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 Gene3D G3DSA:1.10.287.130 211 320 1.5E-15 T 11-10-2018 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 SMART SM00387 367 476 9.2E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 432 8.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 456 8.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 418 8.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 475 8.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 321 6.4E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 SUPERFAMILY SSF103190 96 177 5.49E-8 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_0772 a3fb598275ebacdf6d9ca5c618d3c5ea 476 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 368 475 3.6E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3154 e9cfc82c49e5eec3d36c04ef88fd1dd7 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 260 303 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_3154 e9cfc82c49e5eec3d36c04ef88fd1dd7 311 Pfam PF12833 Helix-turn-helix domain 230 309 5.5E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3154 e9cfc82c49e5eec3d36c04ef88fd1dd7 311 Gene3D G3DSA:1.10.10.60 207 310 1.0E-28 T 11-10-2018 dqs_3154 e9cfc82c49e5eec3d36c04ef88fd1dd7 311 SMART SM00342 224 307 4.9E-29 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3154 e9cfc82c49e5eec3d36c04ef88fd1dd7 311 Pfam PF14525 AraC-binding-like domain 19 193 3.5E-27 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like dqs_3154 e9cfc82c49e5eec3d36c04ef88fd1dd7 311 SUPERFAMILY SSF46689 259 309 1.16E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3154 e9cfc82c49e5eec3d36c04ef88fd1dd7 311 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 276 291 2.2E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_3154 e9cfc82c49e5eec3d36c04ef88fd1dd7 311 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 291 307 2.2E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_1622 7fea94f00c6d4db378c51cfbde11e4e8 142 PRINTS PR00332 Histidine triad family signature 96 106 4.4E-16 T 11-10-2018 IPR001310 Histidine triad (HIT) protein dqs_1622 7fea94f00c6d4db378c51cfbde11e4e8 142 PRINTS PR00332 Histidine triad family signature 29 47 4.4E-16 T 11-10-2018 IPR001310 Histidine triad (HIT) protein dqs_1622 7fea94f00c6d4db378c51cfbde11e4e8 142 PRINTS PR00332 Histidine triad family signature 8 24 4.4E-16 T 11-10-2018 IPR001310 Histidine triad (HIT) protein dqs_1622 7fea94f00c6d4db378c51cfbde11e4e8 142 SUPERFAMILY SSF54197 1 134 8.04E-38 T 11-10-2018 IPR036265 HIT-like superfamily dqs_1622 7fea94f00c6d4db378c51cfbde11e4e8 142 Gene3D G3DSA:3.30.428.10 1 138 8.1E-40 T 11-10-2018 IPR036265 HIT-like superfamily dqs_1622 7fea94f00c6d4db378c51cfbde11e4e8 142 Pfam PF01230 HIT domain 14 109 9.2E-27 T 11-10-2018 IPR001310 Histidine triad (HIT) protein dqs_2870 cfff70ccb5ea9836401780016cdc7010 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 6.2E-50 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G dqs_2870 cfff70ccb5ea9836401780016cdc7010 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 146 243 4.8E-28 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G dqs_2870 cfff70ccb5ea9836401780016cdc7010 260 Pfam PF00460 Flagella basal body rod protein 5 35 3.2E-13 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 dqs_2870 cfff70ccb5ea9836401780016cdc7010 260 SUPERFAMILY SSF117143 92 222 3.01E-34 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like dqs_2870 cfff70ccb5ea9836401780016cdc7010 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 260 8.3E-25 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain dqs_2870 cfff70ccb5ea9836401780016cdc7010 260 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site dqs_2870 cfff70ccb5ea9836401780016cdc7010 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 1.8E-113 T 11-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 dqs_1875 4b38421102779a16b0369999a1836144 637 Gene3D G3DSA:2.60.40.10 7 124 3.7E-34 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_1875 4b38421102779a16b0369999a1836144 637 SUPERFAMILY SSF51011 527 629 5.2E-35 T 11-10-2018 dqs_1875 4b38421102779a16b0369999a1836144 637 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 532 628 3.6E-21 T 11-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 dqs_1875 4b38421102779a16b0369999a1836144 637 SUPERFAMILY SSF51445 87 520 2.98E-107 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1875 4b38421102779a16b0369999a1836144 637 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 33 111 1.6E-15 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 dqs_1875 4b38421102779a16b0369999a1836144 637 SUPERFAMILY SSF81296 41 112 1.54E-9 T 11-10-2018 IPR014756 Immunoglobulin E-set dqs_1875 4b38421102779a16b0369999a1836144 637 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 17 626 3.7E-260 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 dqs_1875 4b38421102779a16b0369999a1836144 637 SMART SM00642 154 504 6.0E-5 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1875 4b38421102779a16b0369999a1836144 637 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 9 630 42.579 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 dqs_1875 4b38421102779a16b0369999a1836144 637 PIRSF PIRSF000463 3 634 1.5E-264 T 11-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 dqs_1875 4b38421102779a16b0369999a1836144 637 Gene3D G3DSA:2.60.40.1180 527 632 9.4E-37 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta dqs_1875 4b38421102779a16b0369999a1836144 637 Gene3D G3DSA:3.20.20.80 127 526 5.4E-159 T 11-10-2018 dqs_1875 4b38421102779a16b0369999a1836144 637 Pfam PF00128 Alpha amylase, catalytic domain 180 252 1.4E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_2251 7e86fb28d3de2f88f4a702413bd845d7 501 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_2251 7e86fb28d3de2f88f4a702413bd845d7 501 SUPERFAMILY SSF53720 17 484 1.7E-126 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_2251 7e86fb28d3de2f88f4a702413bd845d7 501 Pfam PF00171 Aldehyde dehydrogenase family 20 478 3.6E-122 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_2251 7e86fb28d3de2f88f4a702413bd845d7 501 Gene3D G3DSA:3.40.309.10 256 450 9.7E-134 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_2251 7e86fb28d3de2f88f4a702413bd845d7 501 Gene3D G3DSA:3.40.605.10 22 475 9.7E-134 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 SUPERFAMILY SSF56719 30 523 5.49E-180 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 7 843 24.51 T 11-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 SMART SM00434 11 500 9.7E-293 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 SUPERFAMILY SSF101904 534 850 7.06E-112 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Gene3D G3DSA:2.120.10.90 532 843 5.8E-127 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 539 586 3.9E-11 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 694 739 1.0E-13 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 589 638 1.2E-9 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 689 1.1E-7 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 745 792 7.0E-14 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 795 836 4.0E-9 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Gene3D G3DSA:3.90.199.10 33 522 1.3E-225 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Gene3D G3DSA:1.10.268.10 371 494 1.3E-225 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Gene3D G3DSA:3.30.1360.40 236 334 1.3E-225 T 11-10-2018 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 507 1.5E-153 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_1174 d9ec30aaedec7218ae08dd9195b787a0 877 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 10 842 0.0 T 11-10-2018 dqs_0477 399b0738973cd50fa32573afe09f8aa8 134 Pfam PF03061 Thioesterase superfamily 31 103 6.4E-17 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 dqs_0477 399b0738973cd50fa32573afe09f8aa8 134 Gene3D G3DSA:3.10.129.10 6 134 1.8E-35 T 11-10-2018 dqs_0477 399b0738973cd50fa32573afe09f8aa8 134 SUPERFAMILY SSF54637 12 133 1.29E-34 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_1256 8e7261ea18d382a347b011e3c9e357d7 589 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 14 573 1.4E-251 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 dqs_1256 8e7261ea18d382a347b011e3c9e357d7 589 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 6 577 45.253 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 dqs_1256 8e7261ea18d382a347b011e3c9e357d7 589 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 12 576 0.0 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 dqs_1256 8e7261ea18d382a347b011e3c9e357d7 589 PIRSF PIRSF000719 6 581 5.2E-228 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 dqs_3518 0942992ed5a7347b59d09c8cffa49a30 321 Gene3D G3DSA:3.60.15.10 8 266 1.6E-58 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3518 0942992ed5a7347b59d09c8cffa49a30 321 SUPERFAMILY SSF56281 7 261 8.78E-50 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3518 0942992ed5a7347b59d09c8cffa49a30 321 SMART SM00849 23 228 1.6E-27 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3518 0942992ed5a7347b59d09c8cffa49a30 321 Pfam PF00753 Metallo-beta-lactamase superfamily 25 197 2.7E-25 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3618 94e74686f5196e9c7e7c7f1e034fec71 491 Gene3D G3DSA:1.10.287.950 144 397 5.8E-45 T 11-10-2018 dqs_3618 94e74686f5196e9c7e7c7f1e034fec71 491 SMART SM00304 61 114 1.4E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3618 94e74686f5196e9c7e7c7f1e034fec71 491 Gene3D G3DSA:1.10.287.130 61 125 1.5E-5 T 11-10-2018 dqs_3618 94e74686f5196e9c7e7c7f1e034fec71 491 Pfam PF13682 Chemoreceptor zinc-binding domain 374 442 7.3E-10 T 11-10-2018 IPR025991 Chemoreceptor zinc-binding domain dqs_3618 94e74686f5196e9c7e7c7f1e034fec71 491 SMART SM00283 140 425 5.0E-23 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3618 94e74686f5196e9c7e7c7f1e034fec71 491 Pfam PF00672 HAMP domain 63 110 3.1E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3618 94e74686f5196e9c7e7c7f1e034fec71 491 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 203 357 2.0E-32 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3618 94e74686f5196e9c7e7c7f1e034fec71 491 SUPERFAMILY SSF58104 89 365 1.07E-49 T 11-10-2018 dqs_1472 2fb6b45d118d1401468032686b8188e9 577 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 88 255 5.8E-59 T 11-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 dqs_1472 2fb6b45d118d1401468032686b8188e9 577 SUPERFAMILY SSF53474 211 500 1.64E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1472 2fb6b45d118d1401468032686b8188e9 577 Gene3D G3DSA:3.40.50.1820 211 334 5.4E-10 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_4050 47db0afce9a27917f027dceb526d813f 378 Gene3D G3DSA:3.20.20.190 5 342 9.6E-14 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 dqs_4050 47db0afce9a27917f027dceb526d813f 378 SUPERFAMILY SSF51695 9 345 1.83E-26 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 SUPERFAMILY SSF53901 3 275 1.73E-75 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 Pfam PF02803 Thiolase, C-terminal domain 275 399 6.9E-46 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 1.4E-129 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 400 1.3E-219 T 11-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 Gene3D G3DSA:3.40.47.10 6 281 5.1E-150 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 SUPERFAMILY SSF53901 276 399 1.93E-46 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 Gene3D G3DSA:3.40.47.10 141 397 5.1E-150 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 PIRSF PIRSF000429 1 400 4.1E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_0323 a1d2510ad88cd2b6a4da29c6f7f1295a 400 Pfam PF00108 Thiolase, N-terminal domain 4 267 6.2E-68 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 Gene3D G3DSA:3.40.50.720 7 92 2.8E-31 T 11-10-2018 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 404 1.4E-19 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 Pfam PF01225 Mur ligase family, catalytic domain 7 104 2.0E-27 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 7 456 2.1E-164 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 SUPERFAMILY SSF53623 91 311 1.72E-71 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 Gene3D G3DSA:3.40.1190.10 94 310 2.6E-79 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 Pfam PF08245 Mur ligase middle domain 110 293 5.6E-29 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 SUPERFAMILY SSF53244 312 459 1.11E-44 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 Gene3D G3DSA:3.90.190.20 311 467 7.7E-44 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 SUPERFAMILY SSF51984 6 92 3.92E-29 T 11-10-2018 dqs_0956 a69236004f2694e3490b34c8fa7f8ed0 467 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 5 466 43.447 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_1411 c2603fbc2a108f1b611bd0e9f4ae5ddd 150 SMART SM00855 2 106 2.0E-5 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_1411 c2603fbc2a108f1b611bd0e9f4ae5ddd 150 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 68 6.3E-10 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_1411 c2603fbc2a108f1b611bd0e9f4ae5ddd 150 SUPERFAMILY SSF53254 3 130 3.14E-20 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_1411 c2603fbc2a108f1b611bd0e9f4ae5ddd 150 Gene3D G3DSA:3.40.50.1240 1 143 1.3E-28 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_1411 c2603fbc2a108f1b611bd0e9f4ae5ddd 150 PIRSF PIRSF000709 2 72 1.2E-5 T 11-10-2018 dqs_0840 80a3fcd45aa88ac18abfa784b1512874 488 Gene3D G3DSA:3.30.830.10 275 469 3.1E-53 T 11-10-2018 dqs_0840 80a3fcd45aa88ac18abfa784b1512874 488 SUPERFAMILY SSF63411 53 271 1.04E-63 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 dqs_0840 80a3fcd45aa88ac18abfa784b1512874 488 Pfam PF00675 Insulinase (Peptidase family M16) 67 212 1.3E-29 T 11-10-2018 IPR011765 Peptidase M16, N-terminal dqs_0840 80a3fcd45aa88ac18abfa784b1512874 488 Gene3D G3DSA:3.30.830.10 50 273 3.0E-85 T 11-10-2018 dqs_0840 80a3fcd45aa88ac18abfa784b1512874 488 SUPERFAMILY SSF63411 283 469 2.0E-34 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 dqs_0840 80a3fcd45aa88ac18abfa784b1512874 488 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 87 110 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 dqs_0840 80a3fcd45aa88ac18abfa784b1512874 488 Pfam PF05193 Peptidase M16 inactive domain 222 402 7.3E-28 T 11-10-2018 IPR007863 Peptidase M16, C-terminal dqs_3262 a657eeccbf944423354421e0eed053e0 298 Gene3D G3DSA:3.30.470.30 69 169 4.3E-52 T 11-10-2018 dqs_3262 a657eeccbf944423354421e0eed053e0 298 Gene3D G3DSA:2.40.50.140 229 297 2.3E-8 T 11-10-2018 dqs_3262 a657eeccbf944423354421e0eed053e0 298 Pfam PF14743 DNA ligase OB-like domain 231 295 4.6E-28 T 11-10-2018 IPR029319 DNA ligase, OB-like domain dqs_3262 a657eeccbf944423354421e0eed053e0 298 Gene3D G3DSA:3.30.1490.70 51 208 4.3E-52 T 11-10-2018 dqs_3262 a657eeccbf944423354421e0eed053e0 298 SUPERFAMILY SSF56091 43 215 1.98E-32 T 11-10-2018 dqs_3262 a657eeccbf944423354421e0eed053e0 298 SUPERFAMILY SSF50249 191 295 4.97E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_2719 1348a5790118d9034b87dd1aa014afb8 265 SUPERFAMILY SSF56235 2 241 8.99E-36 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_2719 1348a5790118d9034b87dd1aa014afb8 265 Gene3D G3DSA:3.60.20.10 2 210 2.1E-25 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_2719 1348a5790118d9034b87dd1aa014afb8 265 PIRSF PIRSF009120 1 251 2.9E-116 T 11-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 dqs_1091 7647481439314bc03611d3e8bf4914af 341 Gene3D G3DSA:3.30.565.10 206 336 1.5E-11 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1091 7647481439314bc03611d3e8bf4914af 341 Pfam PF06580 Histidine kinase 145 223 3.3E-20 T 11-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 dqs_1091 7647481439314bc03611d3e8bf4914af 341 SUPERFAMILY SSF55874 206 336 3.01E-7 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3960 a7ffd352445870720a2d1de5280d392a 483 Gene3D G3DSA:1.10.645.10 1 483 1.9E-123 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3960 a7ffd352445870720a2d1de5280d392a 483 Pfam PF00374 Nickel-dependent hydrogenase 38 115 4.9E-20 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 dqs_3960 a7ffd352445870720a2d1de5280d392a 483 Pfam PF00374 Nickel-dependent hydrogenase 143 483 6.5E-52 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 dqs_3960 a7ffd352445870720a2d1de5280d392a 483 SUPERFAMILY SSF56762 3 483 1.7E-126 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3960 a7ffd352445870720a2d1de5280d392a 483 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 38 63 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 SUPERFAMILY SSF75620 12 353 3.14E-134 T 11-10-2018 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 1.2E-159 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 Pfam PF00472 RF-1 domain 215 321 1.4E-41 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 SMART SM00937 63 178 6.0E-64 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 Pfam PF03462 PCRF domain 14 203 2.7E-69 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 Gene3D G3DSA:3.30.160.20 210 297 8.8E-97 T 11-10-2018 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.851 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 dqs_1082 82c357e788bc4e967230b67f65c87b29 361 Gene3D G3DSA:3.30.70.1660 112 341 8.8E-97 T 11-10-2018 dqs_2182 4fea1d5a6a2648f271c83ee8cec34bec 254 SUPERFAMILY SSF53335 78 192 5.44E-14 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2182 4fea1d5a6a2648f271c83ee8cec34bec 254 Pfam PF08241 Methyltransferase domain 78 126 2.4E-8 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_2182 4fea1d5a6a2648f271c83ee8cec34bec 254 Gene3D G3DSA:3.40.50.150 46 179 2.7E-17 T 11-10-2018 dqs_4012 407e13ed53aafbb8229b30d381ed0cc8 345 Pfam PF02780 Transketolase, C-terminal domain 208 331 3.5E-35 T 11-10-2018 IPR033248 Transketolase, C-terminal domain dqs_4012 407e13ed53aafbb8229b30d381ed0cc8 345 SMART SM00861 10 185 2.1E-65 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_4012 407e13ed53aafbb8229b30d381ed0cc8 345 Gene3D G3DSA:3.40.50.970 8 206 1.2E-86 T 11-10-2018 dqs_4012 407e13ed53aafbb8229b30d381ed0cc8 345 SUPERFAMILY SSF52518 8 218 3.48E-69 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_4012 407e13ed53aafbb8229b30d381ed0cc8 345 Pfam PF02779 Transketolase, pyrimidine binding domain 10 182 1.1E-50 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_4012 407e13ed53aafbb8229b30d381ed0cc8 345 Gene3D G3DSA:3.40.50.920 207 341 8.6E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_4012 407e13ed53aafbb8229b30d381ed0cc8 345 SUPERFAMILY SSF52922 203 339 6.15E-39 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_3605 8039b56429da802c2349655f2f5433ee 319 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 59 66 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 13 317 8.0E-91 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3605 8039b56429da802c2349655f2f5433ee 319 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 170 315 2.5E-24 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 Gene3D G3DSA:3.40.50.1370 149 296 7.3E-87 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 Gene3D G3DSA:3.40.50.1370 19 312 7.3E-87 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 13 161 3.8E-37 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 SUPERFAMILY SSF53671 12 316 6.81E-91 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00101 Aspartate carbamoyltransferase signature 148 165 2.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00101 Aspartate carbamoyltransferase signature 49 71 2.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00101 Aspartate carbamoyltransferase signature 87 96 2.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00101 Aspartate carbamoyltransferase signature 298 312 2.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00101 Aspartate carbamoyltransferase signature 274 279 2.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00101 Aspartate carbamoyltransferase signature 233 242 2.2E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 149 160 2.4E-17 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 59 78 2.4E-17 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 279 2.4E-17 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 282 305 2.4E-17 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 dqs_3605 8039b56429da802c2349655f2f5433ee 319 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 12 319 40.18 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3610 4fd11c92248ac9a59a0dd341be1cc757 237 SUPERFAMILY SSF51419 1 224 5.1E-82 T 11-10-2018 IPR029066 PLP-binding barrel dqs_3610 4fd11c92248ac9a59a0dd341be1cc757 237 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 226 1.6E-73 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 dqs_3610 4fd11c92248ac9a59a0dd341be1cc757 237 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 225 33.266 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 dqs_3610 4fd11c92248ac9a59a0dd341be1cc757 237 Pfam PF01168 Alanine racemase, N-terminal domain 7 227 1.3E-31 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 dqs_3610 4fd11c92248ac9a59a0dd341be1cc757 237 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 76 90 - T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 dqs_3610 4fd11c92248ac9a59a0dd341be1cc757 237 PIRSF PIRSF004848 1 232 6.7E-76 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 dqs_3610 4fd11c92248ac9a59a0dd341be1cc757 237 Gene3D G3DSA:3.20.20.10 1 233 2.1E-91 T 11-10-2018 IPR029066 PLP-binding barrel dqs_2283 f3a1e9b4bc4c38afd75edf471acaa9a8 135 Pfam PF13279 Thioesterase-like superfamily 15 131 2.7E-16 T 11-10-2018 dqs_2283 f3a1e9b4bc4c38afd75edf471acaa9a8 135 Gene3D G3DSA:3.10.129.10 1 135 9.8E-40 T 11-10-2018 dqs_2283 f3a1e9b4bc4c38afd75edf471acaa9a8 135 SUPERFAMILY SSF54637 6 132 9.92E-37 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_0326 3301d02a92b5355f47b379be1891bcf9 597 Gene3D G3DSA:3.40.50.300 346 595 5.5E-60 T 11-10-2018 dqs_0326 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF00005 ABC transporter 366 523 1.8E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0326 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 306 1.6E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_0326 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 572 594 4.7E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_0326 3301d02a92b5355f47b379be1891bcf9 597 SUPERFAMILY SSF52540 348 593 6.01E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0326 3301d02a92b5355f47b379be1891bcf9 597 SMART SM00382 374 572 2.6E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2147 3301d02a92b5355f47b379be1891bcf9 597 Gene3D G3DSA:3.40.50.300 346 595 5.5E-60 T 11-10-2018 dqs_2147 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF00005 ABC transporter 366 523 1.8E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2147 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 306 1.6E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_2147 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 572 594 4.7E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_2147 3301d02a92b5355f47b379be1891bcf9 597 SUPERFAMILY SSF52540 348 593 6.01E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2147 3301d02a92b5355f47b379be1891bcf9 597 SMART SM00382 374 572 2.6E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2655 3301d02a92b5355f47b379be1891bcf9 597 Gene3D G3DSA:3.40.50.300 346 595 5.5E-60 T 11-10-2018 dqs_2655 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF00005 ABC transporter 366 523 1.8E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2655 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 306 1.6E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_2655 3301d02a92b5355f47b379be1891bcf9 597 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 572 594 4.7E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_2655 3301d02a92b5355f47b379be1891bcf9 597 SUPERFAMILY SSF52540 348 593 6.01E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2655 3301d02a92b5355f47b379be1891bcf9 597 SMART SM00382 374 572 2.6E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 SUPERFAMILY SSF55681 159 498 3.64E-114 T 11-10-2018 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 Pfam PF00152 tRNA synthetases class II (D, K and N) 160 497 3.5E-82 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 19 500 44.102 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 SUPERFAMILY SSF50249 11 152 4.07E-45 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 Gene3D G3DSA:2.40.50.140 13 151 7.1E-43 T 11-10-2018 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 212 228 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 382 398 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 196 206 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 259 276 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 241 254 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 14 499 9.0E-201 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 Gene3D G3DSA:3.30.930.10 155 500 1.6E-127 T 11-10-2018 dqs_1610 6c56f9e9879e2c02e58097226e56bd9b 500 Pfam PF01336 OB-fold nucleic acid binding domain 66 143 6.8E-18 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 dqs_0562 c08a52ce7e1fcbc765cf6f68e04c59be 407 SUPERFAMILY SSF53383 8 379 4.21E-106 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_0562 c08a52ce7e1fcbc765cf6f68e04c59be 407 Gene3D G3DSA:3.40.640.10 20 261 1.5E-144 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_0562 c08a52ce7e1fcbc765cf6f68e04c59be 407 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 9 388 1.0E-191 T 11-10-2018 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 dqs_0562 c08a52ce7e1fcbc765cf6f68e04c59be 407 Gene3D G3DSA:3.90.1150.10 9 378 1.5E-144 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_0562 c08a52ce7e1fcbc765cf6f68e04c59be 407 Pfam PF00266 Aminotransferase class-V 9 371 4.6E-92 T 11-10-2018 IPR000192 Aminotransferase class V domain dqs_0562 c08a52ce7e1fcbc765cf6f68e04c59be 407 PIRSF PIRSF005572 6 386 4.2E-130 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 dqs_0562 c08a52ce7e1fcbc765cf6f68e04c59be 407 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 198 217 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site dqs_0729 6f78f2a5db05b16e284f28275501d252 634 Gene3D G3DSA:1.20.1560.10 34 350 4.6E-19 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_0729 6f78f2a5db05b16e284f28275501d252 634 Pfam PF00005 ABC transporter 384 537 1.2E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0729 6f78f2a5db05b16e284f28275501d252 634 ProSitePatterns PS00211 ABC transporters family signature. 509 523 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0729 6f78f2a5db05b16e284f28275501d252 634 Gene3D G3DSA:3.40.50.300 353 611 8.5E-90 T 11-10-2018 dqs_0729 6f78f2a5db05b16e284f28275501d252 634 SUPERFAMILY SSF52540 352 607 7.46E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0729 6f78f2a5db05b16e284f28275501d252 634 SMART SM00382 392 583 7.0E-21 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0729 6f78f2a5db05b16e284f28275501d252 634 SUPERFAMILY SSF90123 24 349 7.06E-44 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_0729 6f78f2a5db05b16e284f28275501d252 634 Pfam PF00664 ABC transporter transmembrane region 48 307 2.6E-10 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 Gene3D G3DSA:3.10.50.30 78 158 1.0E-28 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 SUPERFAMILY SSF54534 83 157 6.15E-23 T 11-10-2018 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 5.1E-31 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 32.461 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 84 157 6.0E-28 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 2.2E-55 T 11-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 Gene3D G3DSA:1.10.287.180 1 75 1.1E-30 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 PIRSF PIRSF006092 1 158 7.7E-51 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 SUPERFAMILY SSF46557 3 77 1.83E-27 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 dqs_1506 fcaa811ae83ee3f7163ee3be8899928a 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 SUPERFAMILY SSF54631 56 189 1.64E-28 T 11-10-2018 dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 SUPERFAMILY SSF56176 195 275 5.18E-22 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 Gene3D G3DSA:3.10.580.10 40 186 4.5E-49 T 11-10-2018 dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 Pfam PF03471 Transporter associated domain 199 272 7.2E-22 T 11-10-2018 IPR005170 Transporter-associated domain dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 SMART SM01091 195 273 1.1E-28 T 11-10-2018 IPR005170 Transporter-associated domain dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 SMART SM00116 69 118 3.5 T 11-10-2018 IPR000644 CBS domain dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 SMART SM00116 130 178 4.1 T 11-10-2018 IPR000644 CBS domain dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 Pfam PF00571 CBS domain 127 178 1.3E-5 T 11-10-2018 IPR000644 CBS domain dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 Pfam PF00571 CBS domain 61 118 9.2E-5 T 11-10-2018 IPR000644 CBS domain dqs_0851 d22578dc38eb5328f6f118a27c73559b 281 Gene3D G3DSA:3.30.465.10 187 273 2.7E-29 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 dqs_0354 6f8fa2232dd4b3104e53871134344bd4 274 Pfam PF00797 N-acetyltransferase 24 255 1.2E-71 T 11-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 dqs_0354 6f8fa2232dd4b3104e53871134344bd4 274 SUPERFAMILY SSF54001 4 257 1.55E-78 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_0354 6f8fa2232dd4b3104e53871134344bd4 274 Gene3D G3DSA:2.40.128.150 88 184 1.3E-88 T 11-10-2018 dqs_0354 6f8fa2232dd4b3104e53871134344bd4 274 Gene3D G3DSA:3.30.2140.10 6 253 1.3E-88 T 11-10-2018 dqs_0354 6f8fa2232dd4b3104e53871134344bd4 274 PRINTS PR01543 Arylamine N-acetyltransferase signature 72 94 1.2E-11 T 11-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 dqs_0354 6f8fa2232dd4b3104e53871134344bd4 274 PRINTS PR01543 Arylamine N-acetyltransferase signature 24 47 1.2E-11 T 11-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 dqs_0354 6f8fa2232dd4b3104e53871134344bd4 274 PRINTS PR01543 Arylamine N-acetyltransferase signature 48 71 1.2E-11 T 11-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 dqs_0354 6f8fa2232dd4b3104e53871134344bd4 274 PRINTS PR01543 Arylamine N-acetyltransferase signature 105 130 1.2E-11 T 11-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 321 534 3.6E-52 T 11-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 Gene3D G3DSA:3.90.226.10 312 534 1.3E-157 T 11-10-2018 dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 SUPERFAMILY SSF52096 47 278 2.73E-19 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 Gene3D G3DSA:3.90.226.10 87 308 1.3E-157 T 11-10-2018 dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 17 598 1.2E-154 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 SUPERFAMILY SSF52096 317 523 6.63E-41 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 PIRSF PIRSF001217 9 606 1.3E-191 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 Pfam PF01343 Peptidase family S49 131 287 1.3E-26 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 Pfam PF01343 Peptidase family S49 386 536 5.5E-46 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 dqs_4110 da4c4fa56b472df107bc8c11b2b80b20 606 Gene3D G3DSA:3.40.1750.10 179 492 1.3E-157 T 11-10-2018 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SUPERFAMILY SSF55785 269 398 3.32E-10 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Gene3D G3DSA:3.30.450.20 146 210 1.6E-12 T 11-10-2018 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SUPERFAMILY SSF55785 399 530 1.47E-19 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SUPERFAMILY SSF55785 30 142 5.64E-23 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Gene3D G3DSA:2.10.70.100 220 265 1.0E-6 T 11-10-2018 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Gene3D G3DSA:3.30.70.270 534 704 3.2E-52 T 11-10-2018 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00267 532 704 2.5E-51 T 11-10-2018 IPR000160 GGDEF domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Gene3D G3DSA:3.30.450.20 15 145 4.5E-27 T 11-10-2018 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 539 704 3.9E-41 T 11-10-2018 IPR000160 GGDEF domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Pfam PF00563 EAL domain 724 957 2.1E-60 T 11-10-2018 IPR001633 EAL domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00052 716 962 1.2E-59 T 11-10-2018 IPR001633 EAL domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Pfam PF00989 PAS fold 419 529 2.4E-15 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Pfam PF00989 PAS fold 18 129 1.8E-13 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Pfam PF08447 PAS fold 168 256 1.0E-12 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SUPERFAMILY SSF55073 548 704 2.3E-44 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00091 282 353 3.4 T 11-10-2018 IPR000014 PAS domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00091 17 83 1.1E-5 T 11-10-2018 IPR000014 PAS domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00091 413 478 5.0E-7 T 11-10-2018 IPR000014 PAS domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00091 145 213 0.0038 T 11-10-2018 IPR000014 PAS domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SUPERFAMILY SSF141868 723 961 2.09E-67 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Gene3D G3DSA:3.30.450.20 421 530 2.2E-20 T 11-10-2018 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Gene3D G3DSA:3.20.20.450 705 962 4.8E-78 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SUPERFAMILY SSF55785 150 266 1.01E-16 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Pfam PF00990 Diguanylate cyclase, GGDEF domain 543 700 1.3E-40 T 11-10-2018 IPR000160 GGDEF domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Gene3D G3DSA:3.30.450.20 274 414 7.0E-13 T 11-10-2018 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 Pfam PF08448 PAS fold 288 400 5.1E-5 T 11-10-2018 IPR013656 PAS fold-4 dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 142 269 2.5E-9 T 11-10-2018 IPR000014 PAS domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 419 536 4.3E-13 T 11-10-2018 IPR000014 PAS domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 14 137 1.5E-21 T 11-10-2018 IPR000014 PAS domain dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00086 490 532 0.91 T 11-10-2018 IPR001610 PAC motif dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00086 220 263 0.42 T 11-10-2018 IPR001610 PAC motif dqs_2727 d63c1612ea3507f466e7e72ab7994e7b 962 SMART SM00086 91 133 0.057 T 11-10-2018 IPR001610 PAC motif dqs_0872 897921d421faca76ad4d81d14a8a6503 401 Pfam PF00482 Type II secretion system (T2SS), protein F 66 188 3.5E-23 T 11-10-2018 IPR018076 Type II secretion system F domain dqs_0872 897921d421faca76ad4d81d14a8a6503 401 Pfam PF00482 Type II secretion system (T2SS), protein F 270 389 1.0E-22 T 11-10-2018 IPR018076 Type II secretion system F domain dqs_0872 897921d421faca76ad4d81d14a8a6503 401 Gene3D G3DSA:1.20.81.30 54 165 9.2E-23 T 11-10-2018 dqs_0872 897921d421faca76ad4d81d14a8a6503 401 Gene3D G3DSA:1.20.81.30 252 362 2.5E-24 T 11-10-2018 dqs_0872 897921d421faca76ad4d81d14a8a6503 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 364 378 1.7E-7 T 11-10-2018 IPR003004 GspF/PilC family dqs_0872 897921d421faca76ad4d81d14a8a6503 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 380 399 1.7E-7 T 11-10-2018 IPR003004 GspF/PilC family dqs_0872 897921d421faca76ad4d81d14a8a6503 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 62 74 1.7E-7 T 11-10-2018 IPR003004 GspF/PilC family dqs_0872 897921d421faca76ad4d81d14a8a6503 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 160 188 1.7E-7 T 11-10-2018 IPR003004 GspF/PilC family dqs_0390 7f96443133df7369ef8b07dc3eeec4ee 689 SUPERFAMILY SSF56935 40 689 2.75E-94 T 11-10-2018 dqs_0390 7f96443133df7369ef8b07dc3eeec4ee 689 Gene3D G3DSA:2.170.130.10 52 168 1.1E-27 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_0390 7f96443133df7369ef8b07dc3eeec4ee 689 Gene3D G3DSA:2.40.170.20 170 689 1.1E-60 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_0390 7f96443133df7369ef8b07dc3eeec4ee 689 Pfam PF00593 TonB dependent receptor 310 688 7.7E-40 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_0390 7f96443133df7369ef8b07dc3eeec4ee 689 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 158 4.8E-17 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_0935 df6d1983e0ee74b3ce7dce05270cf181 150 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 149 1.7E-56 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 dqs_0935 df6d1983e0ee74b3ce7dce05270cf181 150 SUPERFAMILY SSF51230 75 149 9.16E-25 T 11-10-2018 IPR011053 Single hybrid motif dqs_0935 df6d1983e0ee74b3ce7dce05270cf181 150 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 106 123 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0935 df6d1983e0ee74b3ce7dce05270cf181 150 Pfam PF00364 Biotin-requiring enzyme 77 149 4.5E-24 T 11-10-2018 IPR000089 Biotin/lipoyl attachment dqs_0935 df6d1983e0ee74b3ce7dce05270cf181 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 79 92 2.1E-17 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 dqs_0935 df6d1983e0ee74b3ce7dce05270cf181 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 111 124 2.1E-17 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 dqs_0935 df6d1983e0ee74b3ce7dce05270cf181 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 96 110 2.1E-17 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 dqs_0935 df6d1983e0ee74b3ce7dce05270cf181 150 Gene3D G3DSA:2.40.50.100 73 149 3.2E-31 T 11-10-2018 dqs_0982 f8ecabb3a5ceb60969e9bc085a58e91e 113 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 5 98 1.2E-5 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 dqs_0982 f8ecabb3a5ceb60969e9bc085a58e91e 113 SUPERFAMILY SSF69754 1 93 4.97E-12 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like dqs_0982 f8ecabb3a5ceb60969e9bc085a58e91e 113 Gene3D G3DSA:3.30.160.100 3 104 1.1E-6 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like dqs_3204 c828b648a9d48b5c401ed8ac825f20e9 535 SUPERFAMILY SSF52096 25 269 9.37E-75 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_3204 c828b648a9d48b5c401ed8ac825f20e9 535 Pfam PF01039 Carboxyl transferase domain 48 525 8.0E-149 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 dqs_3204 c828b648a9d48b5c401ed8ac825f20e9 535 SUPERFAMILY SSF52096 237 517 2.18E-85 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_3204 c828b648a9d48b5c401ed8ac825f20e9 535 Gene3D G3DSA:3.90.226.10 275 535 2.9E-100 T 11-10-2018 dqs_3204 c828b648a9d48b5c401ed8ac825f20e9 535 Gene3D G3DSA:3.90.226.10 1 271 9.6E-102 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 2.6E-29 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 PRINTS PR00702 Acriflavin resistance protein family signature 488 511 2.6E-29 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 PRINTS PR00702 Acriflavin resistance protein family signature 408 432 2.6E-29 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 PRINTS PR00702 Acriflavin resistance protein family signature 380 401 2.6E-29 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 PRINTS PR00702 Acriflavin resistance protein family signature 17 41 2.6E-29 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 PRINTS PR00702 Acriflavin resistance protein family signature 45 63 2.6E-29 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Gene3D G3DSA:3.30.70.1320 143 348 1.1E-233 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 SUPERFAMILY SSF82693 585 700 6.8E-11 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 SUPERFAMILY SSF82866 313 515 1.2E-36 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Gene3D G3DSA:3.30.70.1430 589 699 1.1E-233 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Gene3D G3DSA:3.30.70.1440 700 923 1.1E-233 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Gene3D G3DSA:3.30.2090.10 189 280 1.1E-233 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 SUPERFAMILY SSF82866 841 1079 9.16E-41 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Pfam PF00873 AcrB/AcrD/AcrF family 905 1074 4.2E-31 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Pfam PF00873 AcrB/AcrD/AcrF family 14 860 9.7E-118 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 SUPERFAMILY SSF82693 47 137 2.44E-18 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Gene3D G3DSA:1.20.1640.10 530 1072 1.1E-233 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 SUPERFAMILY SSF82714 193 275 4.71E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Gene3D G3DSA:3.30.2090.10 748 842 1.1E-233 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Gene3D G3DSA:3.30.70.1430 47 850 1.1E-233 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 SUPERFAMILY SSF82693 149 345 7.59E-10 T 11-10-2018 dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 SUPERFAMILY SSF82714 747 837 2.49E-8 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_3514 5613c1243421a4df7ed7e1cbc1645c36 1092 Gene3D G3DSA:1.20.1640.10 21 529 1.1E-233 T 11-10-2018 dqs_3166 592951960588702a88873fadfafe3d9e 442 Gene3D G3DSA:1.10.8.60 311 388 9.4E-21 T 11-10-2018 dqs_3166 592951960588702a88873fadfafe3d9e 442 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 421 441 7.2E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3166 592951960588702a88873fadfafe3d9e 442 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 404 421 7.2E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3166 592951960588702a88873fadfafe3d9e 442 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_3166 592951960588702a88873fadfafe3d9e 442 SUPERFAMILY SSF52540 140 381 2.22E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3166 592951960588702a88873fadfafe3d9e 442 SUPERFAMILY SSF52172 22 185 4.97E-6 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3166 592951960588702a88873fadfafe3d9e 442 Pfam PF00158 Sigma-54 interaction domain 141 306 1.2E-68 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_3166 592951960588702a88873fadfafe3d9e 442 SMART SM00382 160 304 2.0E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3166 592951960588702a88873fadfafe3d9e 442 SUPERFAMILY SSF46689 351 440 1.61E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3166 592951960588702a88873fadfafe3d9e 442 Gene3D G3DSA:3.40.50.300 135 310 7.2E-62 T 11-10-2018 dqs_3166 592951960588702a88873fadfafe3d9e 442 Pfam PF02954 Bacterial regulatory protein, Fis family 399 433 2.2E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3166 592951960588702a88873fadfafe3d9e 442 Gene3D G3DSA:1.10.10.60 389 442 3.4E-16 T 11-10-2018 dqs_3074 ce7778d5ff4a2f9a256a6766160fe4c0 287 Gene3D G3DSA:3.40.190.10 25 94 4.0E-6 T 11-10-2018 dqs_3074 ce7778d5ff4a2f9a256a6766160fe4c0 287 SUPERFAMILY SSF53850 36 279 5.68E-21 T 11-10-2018 dqs_3074 ce7778d5ff4a2f9a256a6766160fe4c0 287 Gene3D G3DSA:3.40.190.10 152 241 2.6E-11 T 11-10-2018 dqs_3074 ce7778d5ff4a2f9a256a6766160fe4c0 287 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 125 279 5.1E-11 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_3074 ce7778d5ff4a2f9a256a6766160fe4c0 287 Gene3D G3DSA:3.40.190.10 242 278 2.6E-11 T 11-10-2018 dqs_0677 d4b8d389a2624dd96aa8e2ad1f8f4de2 227 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 227 41.924 T 11-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 dqs_0677 d4b8d389a2624dd96aa8e2ad1f8f4de2 227 SUPERFAMILY SSF51197 4 178 1.65E-6 T 11-10-2018 dqs_0677 d4b8d389a2624dd96aa8e2ad1f8f4de2 227 Gene3D G3DSA:2.60.120.620 1 178 5.1E-38 T 11-10-2018 dqs_0677 d4b8d389a2624dd96aa8e2ad1f8f4de2 227 SMART SM00702 1 177 6.4E-13 T 11-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 dqs_0677 d4b8d389a2624dd96aa8e2ad1f8f4de2 227 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 176 2.9E-13 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 dqs_0677 d4b8d389a2624dd96aa8e2ad1f8f4de2 227 Gene3D G3DSA:4.10.860.20 180 227 2.7E-18 T 11-10-2018 dqs_1563 d7051b488d636e05c17df17527bdb335 552 SUPERFAMILY SSF46548 317 425 5.93E-19 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_1563 d7051b488d636e05c17df17527bdb335 552 Pfam PF13375 RnfC Barrel sandwich hybrid domain 7 108 7.9E-31 T 11-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain dqs_1563 d7051b488d636e05c17df17527bdb335 552 Pfam PF13237 4Fe-4S dicluster domain 361 414 9.7E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_1563 d7051b488d636e05c17df17527bdb335 552 Gene3D G3DSA:1.10.1060.10 360 430 6.2E-13 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_1563 d7051b488d636e05c17df17527bdb335 552 Gene3D G3DSA:3.40.50.11540 136 249 7.6E-10 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1563 d7051b488d636e05c17df17527bdb335 552 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 403 414 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1563 d7051b488d636e05c17df17527bdb335 552 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 5 433 3.3E-160 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 dqs_1563 d7051b488d636e05c17df17527bdb335 552 Pfam PF10531 SLBB domain 285 332 6.2E-13 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1563 d7051b488d636e05c17df17527bdb335 552 SUPERFAMILY SSF142019 87 291 4.05E-55 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1563 d7051b488d636e05c17df17527bdb335 552 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 552 177.563 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 dqs_1563 d7051b488d636e05c17df17527bdb335 552 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 132 273 4.3E-44 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0752 830b34b2f0c162ebf19f356c7470601d 431 Pfam PF03471 Transporter associated domain 349 427 1.0E-20 T 11-10-2018 IPR005170 Transporter-associated domain dqs_0752 830b34b2f0c162ebf19f356c7470601d 431 SUPERFAMILY SSF54631 202 337 3.07E-21 T 11-10-2018 dqs_0752 830b34b2f0c162ebf19f356c7470601d 431 SMART SM01091 348 428 6.1E-30 T 11-10-2018 IPR005170 Transporter-associated domain dqs_0752 830b34b2f0c162ebf19f356c7470601d 431 Pfam PF01595 Domain of unknown function DUF21 8 199 3.8E-39 T 11-10-2018 IPR002550 CNNM, transmembrane domain dqs_0752 830b34b2f0c162ebf19f356c7470601d 431 Gene3D G3DSA:3.10.580.10 196 349 1.2E-31 T 11-10-2018 dqs_0752 830b34b2f0c162ebf19f356c7470601d 431 SUPERFAMILY SSF56176 346 428 9.27E-23 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_0752 830b34b2f0c162ebf19f356c7470601d 431 Pfam PF00571 CBS domain 286 334 3.9E-4 T 11-10-2018 IPR000644 CBS domain dqs_0752 830b34b2f0c162ebf19f356c7470601d 431 Gene3D G3DSA:3.30.465.10 350 428 8.5E-30 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 Pfam PF16448 LapD/MoxY periplasmic domain 23 144 8.9E-44 T 11-10-2018 IPR032244 LapD/MoxY, periplasmic domain dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 SUPERFAMILY SSF141868 407 635 4.84E-44 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 SMART SM00052 400 637 9.8E-12 T 11-10-2018 IPR001633 EAL domain dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 Gene3D G3DSA:3.30.70.270 218 405 7.1E-15 T 11-10-2018 dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 Gene3D G3DSA:3.30.1040.50 100 148 5.9E-18 T 11-10-2018 dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 Pfam PF00563 EAL domain 408 634 7.3E-40 T 11-10-2018 IPR001633 EAL domain dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 Pfam PF00990 Diguanylate cyclase, GGDEF domain 235 344 1.5E-8 T 11-10-2018 IPR000160 GGDEF domain dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 Gene3D G3DSA:3.20.20.450 406 637 2.5E-47 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 SUPERFAMILY SSF55073 239 341 3.61E-9 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 SMART SM00304 170 221 5.5E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0721 a621ff6ad081e0ed120b6ee9427b52fb 637 SMART SM00267 223 389 1.9E-4 T 11-10-2018 IPR000160 GGDEF domain dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 SUPERFAMILY SSF81624 2 139 3.27E-40 T 11-10-2018 IPR035937 MutM-like, N-terminal dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 219 1.2E-22 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 Gene3D G3DSA:1.10.8.50 132 271 3.0E-43 T 11-10-2018 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 269 7.6E-83 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 SMART SM01232 130 222 1.9E-43 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 SUPERFAMILY SSF46946 131 222 2.36E-27 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 Pfam PF06827 Zinc finger found in FPG and IleRS 242 270 6.8E-10 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 SUPERFAMILY SSF57716 218 270 1.03E-16 T 11-10-2018 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 ProSitePatterns PS01242 Zinc finger FPG-type signature. 245 269 - T 11-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 SMART SM00898 2 115 2.2E-51 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 270 42.384 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 1.4E-31 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 dqs_0834 6f2f9563b67d963f3e2cb784f7427fcf 272 Gene3D G3DSA:3.20.190.10 2 125 4.0E-35 T 11-10-2018 IPR035937 MutM-like, N-terminal dqs_1186 d1d9b53e27be18fb1e486763b520b245 264 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 48 261 1.5E-93 T 11-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like dqs_1186 d1d9b53e27be18fb1e486763b520b245 264 Gene3D G3DSA:3.30.420.10 28 219 1.0E-18 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_1186 d1d9b53e27be18fb1e486763b520b245 264 SUPERFAMILY SSF53098 4 233 6.79E-44 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_2937 ae4878810b15852aeae16651a216b0e1 360 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 231 311 3.7E-35 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 dqs_2937 ae4878810b15852aeae16651a216b0e1 360 SUPERFAMILY SSF52467 230 348 2.85E-47 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_2937 ae4878810b15852aeae16651a216b0e1 360 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 293 319 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 dqs_2937 ae4878810b15852aeae16651a216b0e1 360 Gene3D G3DSA:3.40.50.620 21 225 3.6E-61 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2937 ae4878810b15852aeae16651a216b0e1 360 Gene3D G3DSA:3.40.50.1220 226 358 7.3E-54 T 11-10-2018 dqs_2937 ae4878810b15852aeae16651a216b0e1 360 SUPERFAMILY SSF52402 23 222 3.77E-48 T 11-10-2018 dqs_2937 ae4878810b15852aeae16651a216b0e1 360 Pfam PF01012 Electron transfer flavoprotein domain 25 207 8.0E-39 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2937 ae4878810b15852aeae16651a216b0e1 360 SMART SM00893 25 217 5.9E-40 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2937 ae4878810b15852aeae16651a216b0e1 360 PIRSF PIRSF000089 21 354 2.9E-111 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 dqs_2355 f2f3204c01f6af9a2b4d79fac68cc912 211 SMART SM00382 26 209 6.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2355 f2f3204c01f6af9a2b4d79fac68cc912 211 SUPERFAMILY SSF52540 2 205 1.33E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2355 f2f3204c01f6af9a2b4d79fac68cc912 211 Pfam PF00005 ABC transporter 20 164 1.7E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2355 f2f3204c01f6af9a2b4d79fac68cc912 211 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2355 f2f3204c01f6af9a2b4d79fac68cc912 211 Gene3D G3DSA:3.40.50.300 2 208 1.9E-51 T 11-10-2018 dqs_1366 fb2ce0db544909e0deb733940e680414 646 Pfam PF12392 Collagenase 393 507 1.3E-21 T 11-10-2018 IPR020988 Peptidase U32, collagenase dqs_1366 fb2ce0db544909e0deb733940e680414 646 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 dqs_1366 fb2ce0db544909e0deb733940e680414 646 Pfam PF01136 Peptidase family U32 78 306 5.4E-71 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 dqs_2393 4bd75e0562b420391e2074bc559182fa 226 SUPERFAMILY SSF48008 90 218 1.91E-29 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_2393 4bd75e0562b420391e2074bc559182fa 226 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 4.4E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2393 4bd75e0562b420391e2074bc559182fa 226 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 4.4E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2393 4bd75e0562b420391e2074bc559182fa 226 Pfam PF07729 FCD domain 90 211 8.0E-29 T 11-10-2018 IPR011711 GntR, C-terminal dqs_2393 4bd75e0562b420391e2074bc559182fa 226 SUPERFAMILY SSF46785 5 71 1.93E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2393 4bd75e0562b420391e2074bc559182fa 226 SMART SM00895 89 213 2.0E-24 T 11-10-2018 IPR011711 GntR, C-terminal dqs_2393 4bd75e0562b420391e2074bc559182fa 226 Gene3D G3DSA:1.20.120.530 88 217 3.8E-30 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_2393 4bd75e0562b420391e2074bc559182fa 226 Gene3D G3DSA:1.10.10.10 2 71 1.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2393 4bd75e0562b420391e2074bc559182fa 226 SMART SM00345 8 67 2.3E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2393 4bd75e0562b420391e2074bc559182fa 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 67 2.8E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2132 c69f299627170971cfa600fb2996baa3 446 SUPERFAMILY SSF50022 23 163 1.05E-34 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2132 c69f299627170971cfa600fb2996baa3 446 SUPERFAMILY SSF55961 183 417 2.59E-56 T 11-10-2018 dqs_2132 c69f299627170971cfa600fb2996baa3 446 Pfam PF00355 Rieske [2Fe-2S] domain 45 124 2.1E-17 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_2132 c69f299627170971cfa600fb2996baa3 446 Gene3D G3DSA:3.90.380.10 18 416 2.7E-271 T 11-10-2018 dqs_2132 c69f299627170971cfa600fb2996baa3 446 Pfam PF11723 Homotrimeric ring hydroxylase 161 410 2.4E-68 T 11-10-2018 IPR021028 Homotrimeric ring hydroxylase, catalytic domain KEGG: 00621+1.14.12.22|MetaCyc: PWY-6550 dqs_2132 c69f299627170971cfa600fb2996baa3 446 Gene3D G3DSA:3.30.1880.20 44 159 2.7E-271 T 11-10-2018 dqs_2132 c69f299627170971cfa600fb2996baa3 446 Gene3D G3DSA:2.20.25.580 84 444 2.7E-271 T 11-10-2018 dqs_2116 c69f299627170971cfa600fb2996baa3 446 SUPERFAMILY SSF50022 23 163 1.05E-34 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2116 c69f299627170971cfa600fb2996baa3 446 SUPERFAMILY SSF55961 183 417 2.59E-56 T 11-10-2018 dqs_2116 c69f299627170971cfa600fb2996baa3 446 Pfam PF00355 Rieske [2Fe-2S] domain 45 124 2.1E-17 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_2116 c69f299627170971cfa600fb2996baa3 446 Gene3D G3DSA:3.90.380.10 18 416 2.7E-271 T 11-10-2018 dqs_2116 c69f299627170971cfa600fb2996baa3 446 Pfam PF11723 Homotrimeric ring hydroxylase 161 410 2.4E-68 T 11-10-2018 IPR021028 Homotrimeric ring hydroxylase, catalytic domain KEGG: 00621+1.14.12.22|MetaCyc: PWY-6550 dqs_2116 c69f299627170971cfa600fb2996baa3 446 Gene3D G3DSA:3.30.1880.20 44 159 2.7E-271 T 11-10-2018 dqs_2116 c69f299627170971cfa600fb2996baa3 446 Gene3D G3DSA:2.20.25.580 84 444 2.7E-271 T 11-10-2018 dqs_0642 9b1c28255971a0666f8f42ec5a645274 106 SUPERFAMILY SSF117782 1 105 4.32E-39 T 11-10-2018 IPR035439 UPF0145 domain superfamily dqs_0642 9b1c28255971a0666f8f42ec5a645274 106 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 25.059 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 dqs_0642 9b1c28255971a0666f8f42ec5a645274 106 Gene3D G3DSA:3.30.110.70 2 106 4.8E-43 T 11-10-2018 dqs_0642 9b1c28255971a0666f8f42ec5a645274 106 Pfam PF01906 Putative heavy-metal-binding 1 104 1.1E-40 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 dqs_1578 0f452c07afbc2793674f400428213a4f 317 Pfam PF01739 CheR methyltransferase, SAM binding domain 119 308 5.0E-57 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal dqs_1578 0f452c07afbc2793674f400428213a4f 317 Pfam PF03705 CheR methyltransferase, all-alpha domain 54 106 2.0E-17 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal dqs_1578 0f452c07afbc2793674f400428213a4f 317 PIRSF PIRSF000410 36 315 1.1E-95 T 11-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR dqs_1578 0f452c07afbc2793674f400428213a4f 317 PRINTS PR00996 Glutamate methyltransferase family signature 112 124 1.8E-42 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_1578 0f452c07afbc2793674f400428213a4f 317 PRINTS PR00996 Glutamate methyltransferase family signature 181 197 1.8E-42 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_1578 0f452c07afbc2793674f400428213a4f 317 PRINTS PR00996 Glutamate methyltransferase family signature 253 267 1.8E-42 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_1578 0f452c07afbc2793674f400428213a4f 317 PRINTS PR00996 Glutamate methyltransferase family signature 75 88 1.8E-42 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_1578 0f452c07afbc2793674f400428213a4f 317 PRINTS PR00996 Glutamate methyltransferase family signature 147 167 1.8E-42 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_1578 0f452c07afbc2793674f400428213a4f 317 PRINTS PR00996 Glutamate methyltransferase family signature 272 295 1.8E-42 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_1578 0f452c07afbc2793674f400428213a4f 317 Gene3D G3DSA:1.10.155.10 42 117 4.5E-25 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily dqs_1578 0f452c07afbc2793674f400428213a4f 317 SUPERFAMILY SSF53335 119 310 4.04E-56 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1578 0f452c07afbc2793674f400428213a4f 317 SMART SM00138 53 313 2.5E-97 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 dqs_1578 0f452c07afbc2793674f400428213a4f 317 Gene3D G3DSA:3.40.50.150 118 313 1.2E-65 T 11-10-2018 dqs_1578 0f452c07afbc2793674f400428213a4f 317 SUPERFAMILY SSF47757 46 118 1.7E-20 T 11-10-2018 dqs_0704 358277683d1d23e512f7768b2c0418e6 159 SUPERFAMILY SSF88697 1 149 4.64E-59 T 11-10-2018 IPR015947 PUA-like superfamily dqs_0704 358277683d1d23e512f7768b2c0418e6 159 Pfam PF01878 EVE domain 2 148 3.0E-52 T 11-10-2018 IPR002740 EVE domain dqs_0704 358277683d1d23e512f7768b2c0418e6 159 Gene3D G3DSA:3.10.590.10 1 152 7.5E-62 T 11-10-2018 dqs_2041 cfd83bb8278be90c921485b103fe4fdf 374 SMART SM00631 113 322 0.0013 T 11-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 dqs_2041 cfd83bb8278be90c921485b103fe4fdf 374 Pfam PF00246 Zinc carboxypeptidase 128 342 1.8E-22 T 11-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 dqs_2041 cfd83bb8278be90c921485b103fe4fdf 374 Gene3D G3DSA:3.40.630.10 114 373 9.0E-66 T 11-10-2018 dqs_2041 cfd83bb8278be90c921485b103fe4fdf 374 SUPERFAMILY SSF53187 105 371 4.96E-57 T 11-10-2018 dqs_2041 cfd83bb8278be90c921485b103fe4fdf 374 Gene3D G3DSA:2.60.40.3120 1 113 6.6E-44 T 11-10-2018 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 Gene3D G3DSA:3.90.640.10 229 316 3.2E-164 T 11-10-2018 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 Gene3D G3DSA:1.20.1270.10 524 607 1.1E-27 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 SUPERFAMILY SSF53067 187 382 8.64E-67 T 11-10-2018 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 SUPERFAMILY SSF100934 507 605 6.02E-21 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 Pfam PF00012 Hsp70 protein 4 603 3.5E-264 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 2.0E-294 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 Gene3D G3DSA:3.30.420.40 5 379 3.2E-164 T 11-10-2018 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 Gene3D G3DSA:2.60.34.10 383 523 5.2E-66 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 637 37.29 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 Gene3D G3DSA:3.30.420.40 180 366 3.2E-164 T 11-10-2018 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 SUPERFAMILY SSF53067 4 184 6.8E-64 T 11-10-2018 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 SUPERFAMILY SSF100920 384 540 6.8E-63 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 334 350 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 365 385 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 198 208 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 469 485 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_1171 c844c6dc01eee2a559d826ad13e98b5a 641 PRINTS PR00301 70kDa heat shock protein signature 388 407 1.1E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_3650 fad9ca140a11d3d8611d4829b26629ac 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 35.461 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3650 fad9ca140a11d3d8611d4829b26629ac 100 Gene3D G3DSA:3.30.280.10 1 100 3.2E-48 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3650 fad9ca140a11d3d8611d4829b26629ac 100 Pfam PF00547 Urease, gamma subunit 1 99 1.2E-47 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3650 fad9ca140a11d3d8611d4829b26629ac 100 PIRSF PIRSF001223 1 100 1.9E-51 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3650 fad9ca140a11d3d8611d4829b26629ac 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 1.1E-54 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3650 fad9ca140a11d3d8611d4829b26629ac 100 SUPERFAMILY SSF54111 1 99 2.88E-47 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3650 fad9ca140a11d3d8611d4829b26629ac 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 3.0E-41 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3989 3368df846da33a2f72311c2ef438f891 275 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 27 115 2.3E-30 T 11-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal dqs_3989 3368df846da33a2f72311c2ef438f891 275 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 29 91 3.0E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3989 3368df846da33a2f72311c2ef438f891 275 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 206 272 2.6E-16 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 dqs_3989 3368df846da33a2f72311c2ef438f891 275 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 135 202 1.4E-21 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 dqs_3989 3368df846da33a2f72311c2ef438f891 275 Pfam PF03459 TOBE domain 209 271 3.3E-12 T 11-10-2018 IPR005116 Transport-associated OB, type 1 dqs_3989 3368df846da33a2f72311c2ef438f891 275 Pfam PF03459 TOBE domain 137 200 2.5E-19 T 11-10-2018 IPR005116 Transport-associated OB, type 1 dqs_3989 3368df846da33a2f72311c2ef438f891 275 PIRSF PIRSF005763 8 275 5.6E-100 T 11-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 dqs_3989 3368df846da33a2f72311c2ef438f891 275 SUPERFAMILY SSF46785 16 115 9.07E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3989 3368df846da33a2f72311c2ef438f891 275 SUPERFAMILY SSF50331 206 273 3.4E-17 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_3989 3368df846da33a2f72311c2ef438f891 275 Gene3D G3DSA:2.40.50.100 135 201 6.9E-24 T 11-10-2018 dqs_3989 3368df846da33a2f72311c2ef438f891 275 SUPERFAMILY SSF50331 135 203 3.89E-20 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_3989 3368df846da33a2f72311c2ef438f891 275 Gene3D G3DSA:2.40.50.100 203 274 3.3E-23 T 11-10-2018 dqs_3989 3368df846da33a2f72311c2ef438f891 275 Gene3D G3DSA:1.10.10.10 7 123 9.8E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3414 698b7b39e0d59ce83f5e937991523f11 516 TIGRFAM TIGR03109 exosortase_1: exosortase A 27 288 4.4E-93 T 11-10-2018 IPR017540 Exosortase 1 dqs_3414 698b7b39e0d59ce83f5e937991523f11 516 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 37 286 1.0E-57 T 11-10-2018 IPR019127 Exosortase dqs_3414 698b7b39e0d59ce83f5e937991523f11 516 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 343 501 2.6E-21 T 11-10-2018 IPR014263 Methanolan biosynthesis EpsI dqs_3414 698b7b39e0d59ce83f5e937991523f11 516 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 193 282 1.4E-20 T 11-10-2018 IPR026392 Exosortase/Archaeosortase domain dqs_3414 698b7b39e0d59ce83f5e937991523f11 516 TIGRFAM TIGR02602 8TM_EpsH: exosortase 51 286 7.0E-74 T 11-10-2018 IPR013426 Exosortase, EpsH-like dqs_3414 698b7b39e0d59ce83f5e937991523f11 516 Pfam PF11984 Protein of unknown function (DUF3485) 311 502 4.0E-30 T 11-10-2018 IPR014263 Methanolan biosynthesis EpsI dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 SUPERFAMILY SSF52540 10 255 4.87E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 SMART SM00382 34 233 4.0E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 SMART SM00382 310 501 1.2E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 504 587 1.6E-10 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 Pfam PF00005 ABC transporter 301 453 2.5E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 ProSitePatterns PS00211 ABC transporters family signature. 425 439 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 Gene3D G3DSA:3.40.50.300 276 596 3.8E-75 T 11-10-2018 dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 Gene3D G3DSA:3.40.50.300 9 275 3.0E-72 T 11-10-2018 dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 Pfam PF00005 ABC transporter 26 183 7.5E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 504 568 2.8E-13 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 282 0.12 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 dqs_0235 0bd2794cc9af75df45022c24ae0d4598 597 SUPERFAMILY SSF52540 277 521 7.07E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 Hamap MF_00318 Enolase [eno]. 2 411 44.305 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 Pfam PF03952 Enolase, N-terminal domain 4 133 4.8E-59 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 PRINTS PR00148 Enolase signature 107 123 6.5E-41 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 PRINTS PR00148 Enolase signature 311 322 6.5E-41 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 PRINTS PR00148 Enolase signature 334 348 6.5E-41 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 PRINTS PR00148 Enolase signature 161 174 6.5E-41 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 PRINTS PR00148 Enolase signature 37 51 6.5E-41 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 PRINTS PR00148 Enolase signature 363 380 6.5E-41 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 SMART SM01192 139 425 4.6E-215 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 Gene3D G3DSA:3.20.20.120 128 429 5.7E-132 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 Gene3D G3DSA:3.30.390.10 1 127 3.5E-56 T 11-10-2018 IPR029017 Enolase-like, N-terminal dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 SMART SM01193 4 134 6.1E-95 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 SUPERFAMILY SSF54826 4 136 1.06E-55 T 11-10-2018 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 PIRSF PIRSF001400 1 425 7.6E-188 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 423 3.1E-129 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 425 1.3E-204 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 ProSitePatterns PS00164 Enolase signature. 334 347 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2277 49f9ed0c114e7da9bd3d1dcd2bf0c5e3 429 SUPERFAMILY SSF51604 139 426 6.51E-126 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily dqs_3221 6ac9937b7b5bc818cf0669044404bb4e 78 SUPERFAMILY SSF64307 7 74 2.62E-9 T 11-10-2018 IPR036868 TusA-like domain superfamily dqs_3221 6ac9937b7b5bc818cf0669044404bb4e 78 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 10 75 6.7E-19 T 11-10-2018 IPR018720 Domain of unknown function DUF2249 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SMART SM00065 175 323 5.5E-6 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SMART SM00065 365 519 9.0E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SUPERFAMILY SSF55073 660 818 2.82E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Gene3D G3DSA:3.30.70.270 654 829 1.1E-63 T 11-10-2018 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Gene3D G3DSA:3.30.450.40 171 322 3.1E-24 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 530 651 3.1E-22 T 11-10-2018 IPR000014 PAS domain dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SUPERFAMILY SSF55781 158 331 1.33E-21 T 11-10-2018 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Gene3D G3DSA:3.30.450.40 348 512 3.4E-28 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SMART SM00267 644 816 8.8E-67 T 11-10-2018 IPR000160 GGDEF domain dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Gene3D G3DSA:3.40.50.2300 1 125 1.4E-30 T 11-10-2018 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SUPERFAMILY SSF55781 330 508 2.4E-27 T 11-10-2018 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SMART SM00091 527 596 1.1E-4 T 11-10-2018 IPR000014 PAS domain dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SUPERFAMILY SSF52172 1 124 9.68E-31 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Pfam PF00072 Response regulator receiver domain 4 116 2.1E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SMART SM00052 826 1072 2.3E-123 T 11-10-2018 IPR001633 EAL domain dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Gene3D G3DSA:3.20.20.450 830 1081 3.2E-108 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SUPERFAMILY SSF55785 546 644 2.9E-25 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 651 814 1.0E-45 T 11-10-2018 IPR000160 GGDEF domain dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Gene3D G3DSA:3.30.450.20 513 653 8.8E-39 T 11-10-2018 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Pfam PF00563 EAL domain 832 1067 1.9E-76 T 11-10-2018 IPR001633 EAL domain dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SMART SM00448 2 116 2.0E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Pfam PF13426 PAS domain 539 643 5.4E-20 T 11-10-2018 IPR000014 PAS domain dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SUPERFAMILY SSF141868 831 1079 2.75E-96 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Pfam PF00990 Diguanylate cyclase, GGDEF domain 655 812 4.1E-51 T 11-10-2018 IPR000160 GGDEF domain dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 SMART SM00086 602 644 4.3E-9 T 11-10-2018 IPR001610 PAC motif dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Pfam PF13185 GAF domain 174 312 1.2E-12 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1613 d1ef8941e19ae33338487493cf4b9a77 1089 Pfam PF13185 GAF domain 365 508 2.0E-21 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2091 75ac8d444cdbb5c80996317ebbb087e9 335 Pfam PF12833 Helix-turn-helix domain 249 330 8.3E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2091 75ac8d444cdbb5c80996317ebbb087e9 335 SUPERFAMILY SSF46689 227 277 3.23E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2091 75ac8d444cdbb5c80996317ebbb087e9 335 Pfam PF14525 AraC-binding-like domain 27 206 1.8E-41 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like dqs_2091 75ac8d444cdbb5c80996317ebbb087e9 335 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 280 325 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_2091 75ac8d444cdbb5c80996317ebbb087e9 335 SUPERFAMILY SSF46689 283 329 6.27E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2091 75ac8d444cdbb5c80996317ebbb087e9 335 Gene3D G3DSA:1.10.10.60 227 334 6.0E-34 T 11-10-2018 dqs_2091 75ac8d444cdbb5c80996317ebbb087e9 335 SMART SM00342 243 329 6.3E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3955 6edf3cfef108c4fd80ea6812d4e5875b 380 Gene3D G3DSA:1.10.10.2140 321 372 1.7E-24 T 11-10-2018 dqs_3955 6edf3cfef108c4fd80ea6812d4e5875b 380 Pfam PF01924 Hydrogenase formation hypA family 12 370 1.7E-151 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 dqs_3955 6edf3cfef108c4fd80ea6812d4e5875b 380 PIRSF PIRSF005622 1 375 2.1E-152 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 dqs_3955 6edf3cfef108c4fd80ea6812d4e5875b 380 Gene3D G3DSA:3.40.50.11740 61 307 1.7E-102 T 11-10-2018 dqs_3955 6edf3cfef108c4fd80ea6812d4e5875b 380 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 372 2.6E-139 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 dqs_3955 6edf3cfef108c4fd80ea6812d4e5875b 380 Gene3D G3DSA:3.40.50.11750 26 266 1.7E-102 T 11-10-2018 dqs_3655 6f9851e33f3eaf0354775e443b4b2fa1 344 Gene3D G3DSA:3.40.190.10 117 222 5.3E-62 T 11-10-2018 dqs_3655 6f9851e33f3eaf0354775e443b4b2fa1 344 Gene3D G3DSA:3.40.190.10 36 311 5.3E-62 T 11-10-2018 dqs_3655 6f9851e33f3eaf0354775e443b4b2fa1 344 SUPERFAMILY SSF53850 33 275 2.77E-33 T 11-10-2018 dqs_3655 6f9851e33f3eaf0354775e443b4b2fa1 344 Pfam PF09084 NMT1/THI5 like 47 261 1.3E-41 T 11-10-2018 IPR015168 SsuA/THI5-like dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 329 2.3E-55 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 Gene3D G3DSA:3.50.50.100 3 411 1.3E-95 T 11-10-2018 dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 192 4.2E-9 T 11-10-2018 dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 4.2E-9 T 11-10-2018 dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 4.2E-9 T 11-10-2018 dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 SUPERFAMILY SSF51905 1 329 9.98E-31 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.1E-19 T 11-10-2018 dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 113 131 3.1E-19 T 11-10-2018 dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 3.1E-19 T 11-10-2018 dqs_1984 a9262c9ba23053be70d7e068c4332af1 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 3.1E-19 T 11-10-2018 dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Pfam PF02769 AIR synthase related protein, C-terminal domain 832 982 2.0E-10 T 11-10-2018 IPR010918 PurM-like, C-terminal domain dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Pfam PF02769 AIR synthase related protein, C-terminal domain 428 586 5.8E-30 T 11-10-2018 IPR010918 PurM-like, C-terminal domain dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Gene3D G3DSA:3.90.650.10 812 998 1.7E-28 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 SUPERFAMILY SSF109736 156 221 1.03E-22 T 11-10-2018 dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 4 1313 21.025 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Gene3D G3DSA:3.90.650.10 417 602 2.4E-57 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 SUPERFAMILY SSF82697 4 153 1.1E-42 T 11-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 SUPERFAMILY SSF55326 617 811 4.19E-66 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Gene3D G3DSA:3.40.50.880 999 1313 1.9E-129 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 7 1312 0.0 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 SUPERFAMILY SSF52317 1054 1312 1.49E-91 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 SUPERFAMILY SSF55326 222 421 9.07E-63 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Gene3D G3DSA:3.30.1330.10 215 416 1.2E-42 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 SUPERFAMILY SSF56042 820 1050 1.36E-45 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Gene3D G3DSA:1.10.8.750 154 214 1.3E-29 T 11-10-2018 dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1057 1312 5.9E-103 T 11-10-2018 dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 Gene3D G3DSA:3.30.1330.10 621 803 5.4E-23 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 SUPERFAMILY SSF56042 428 651 2.24E-54 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_2291 012139bc438f695cf3126cdb33fa64f8 1313 SMART SM01211 1057 1312 4.3E-146 T 11-10-2018 dqs_1317 94cafe0648620d480aea7f7ada95c420 312 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 4 286 38.504 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 dqs_1317 94cafe0648620d480aea7f7ada95c420 312 Gene3D G3DSA:3.40.1010.20 9 282 3.0E-114 T 11-10-2018 dqs_1317 94cafe0648620d480aea7f7ada95c420 312 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 5 284 1.6E-103 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 dqs_1317 94cafe0648620d480aea7f7ada95c420 312 Pfam PF02401 LytB protein 6 283 6.1E-94 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 dqs_1317 94cafe0648620d480aea7f7ada95c420 312 Gene3D G3DSA:3.40.50.11270 15 99 3.0E-114 T 11-10-2018 dqs_1317 94cafe0648620d480aea7f7ada95c420 312 Gene3D G3DSA:3.40.1010.20 100 196 3.0E-114 T 11-10-2018 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 Gene3D G3DSA:2.10.109.10 56 252 2.9E-74 T 11-10-2018 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 ProSitePatterns PS00761 Signal peptidases I signature 3. 217 230 - T 11-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 Pfam PF00717 Peptidase S24-like 64 146 1.5E-20 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 ProSitePatterns PS00501 Signal peptidases I serine active site. 67 74 - T 11-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 ProSitePatterns PS00760 Signal peptidases I lysine active site. 124 136 - T 11-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 58 74 1.3E-24 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 122 134 1.3E-24 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 212 231 1.3E-24 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 Gene3D G3DSA:2.170.230.10 133 211 2.9E-74 T 11-10-2018 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 SUPERFAMILY SSF51306 56 258 5.75E-69 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 44 252 2.8E-48 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 dqs_1765 1d11c5aae63ec2e79e86e08899a362c6 262 Pfam PF10502 Signal peptidase, peptidase S26 210 249 1.1E-4 T 11-10-2018 IPR019533 Peptidase S26 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 SUPERFAMILY SSF52540 10 197 6.9E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 12 463 5.6E-155 T 11-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Gene3D G3DSA:1.10.10.10 343 523 1.3E-51 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 SMART SM00956 412 515 4.9E-55 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Gene3D G3DSA:3.40.50.300 2 208 2.4E-78 T 11-10-2018 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 SMART SM00341 534 606 3.5E-10 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 11 606 4.5E-245 T 11-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Pfam PF16124 RecQ zinc-binding 344 405 2.8E-18 T 11-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 SUPERFAMILY SSF47819 535 606 9.38E-23 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Pfam PF09382 RQC domain 407 519 1.4E-41 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Gene3D G3DSA:1.10.150.80 538 607 1.0E-23 T 11-10-2018 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Pfam PF00270 DEAD/DEAH box helicase 26 188 4.0E-17 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Pfam PF00271 Helicase conserved C-terminal domain 227 331 1.6E-15 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Gene3D G3DSA:3.40.50.300 209 341 7.7E-38 T 11-10-2018 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 Pfam PF00570 HRDC domain 540 604 2.3E-22 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 SMART SM00490 251 332 1.2E-24 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 SMART SM00487 18 218 1.5E-27 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_3456 9d4ccc7af737990490dd7ed368d6a1a5 608 SUPERFAMILY SSF52540 208 455 5.05E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0678 d608a9e064f55ed5b8442e0cf5aabaca 373 SUPERFAMILY SSF51395 18 368 5.19E-94 T 11-10-2018 dqs_0678 d608a9e064f55ed5b8442e0cf5aabaca 373 PIRSF PIRSF000138 4 373 2.7E-117 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 dqs_0678 d608a9e064f55ed5b8442e0cf5aabaca 373 Gene3D G3DSA:3.20.20.70 16 372 2.2E-128 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0678 d608a9e064f55ed5b8442e0cf5aabaca 373 Pfam PF01070 FMN-dependent dehydrogenase 29 368 8.4E-121 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 dqs_3996 40f8805becaae30a3ea12e17453fe5bb 687 SUPERFAMILY SSF56935 24 641 6.59E-76 T 11-10-2018 dqs_3996 40f8805becaae30a3ea12e17453fe5bb 687 Gene3D G3DSA:2.40.170.20 158 651 2.2E-33 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_3996 40f8805becaae30a3ea12e17453fe5bb 687 Pfam PF00593 TonB dependent receptor 259 641 5.4E-16 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_3996 40f8805becaae30a3ea12e17453fe5bb 687 Gene3D G3DSA:2.170.130.10 19 150 9.9E-29 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_3996 40f8805becaae30a3ea12e17453fe5bb 687 Pfam PF07715 TonB-dependent Receptor Plug Domain 35 145 1.2E-20 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_0146 d3f840e98d5323871259980f0bbde9c2 432 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 38 394 1.7E-152 T 11-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like dqs_0146 d3f840e98d5323871259980f0bbde9c2 432 Gene3D G3DSA:3.40.50.2300 153 385 1.9E-149 T 11-10-2018 dqs_0146 d3f840e98d5323871259980f0bbde9c2 432 SUPERFAMILY SSF53822 37 403 6.73E-98 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_0146 d3f840e98d5323871259980f0bbde9c2 432 Pfam PF13433 Periplasmic binding protein domain 38 398 2.7E-161 T 11-10-2018 dqs_0146 d3f840e98d5323871259980f0bbde9c2 432 Gene3D G3DSA:3.40.50.2300 40 366 1.9E-149 T 11-10-2018 dqs_3969 5ea3e52298c63c64e8e92557b29e80f1 313 Pfam PF02574 Homocysteine S-methyltransferase 17 310 3.6E-39 T 11-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 dqs_3969 5ea3e52298c63c64e8e92557b29e80f1 313 SUPERFAMILY SSF82282 7 313 4.58E-58 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 dqs_3969 5ea3e52298c63c64e8e92557b29e80f1 313 Gene3D G3DSA:3.20.20.330 9 309 1.4E-31 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 dqs_3449 47c94e327fbe829dadf800ef9011b530 427 Pfam PF02353 Mycolic acid cyclopropane synthetase 149 420 2.7E-83 T 11-10-2018 dqs_3449 47c94e327fbe829dadf800ef9011b530 427 PIRSF PIRSF003085 35 427 4.8E-126 T 11-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 dqs_3449 47c94e327fbe829dadf800ef9011b530 427 Gene3D G3DSA:3.40.50.150 153 427 8.3E-101 T 11-10-2018 dqs_3449 47c94e327fbe829dadf800ef9011b530 427 SUPERFAMILY SSF53335 154 425 6.59E-77 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2761 f42984d091e64828a777f2839f0a1a77 298 Gene3D G3DSA:1.10.10.10 3 88 1.1E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2761 f42984d091e64828a777f2839f0a1a77 298 Pfam PF03466 LysR substrate binding domain 88 289 8.7E-46 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2761 f42984d091e64828a777f2839f0a1a77 298 Gene3D G3DSA:3.40.190.10 91 290 2.8E-65 T 11-10-2018 dqs_2761 f42984d091e64828a777f2839f0a1a77 298 SUPERFAMILY SSF53850 90 295 1.1E-45 T 11-10-2018 dqs_2761 f42984d091e64828a777f2839f0a1a77 298 SUPERFAMILY SSF46785 3 112 5.81E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2761 f42984d091e64828a777f2839f0a1a77 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 8.7E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2761 f42984d091e64828a777f2839f0a1a77 298 Gene3D G3DSA:3.40.190.10 163 264 2.8E-65 T 11-10-2018 dqs_2071 11fcae74b2fe6372d6ffd3e78b3a9c7c 138 Pfam PF08905 Domain of unknown function (DUF1850) 19 108 1.5E-23 T 11-10-2018 IPR015001 Protein of unknown function DUF1850 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 PRINTS PR00143 Citrate synthase signature 381 395 1.7E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 PRINTS PR00143 Citrate synthase signature 297 317 1.7E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 PRINTS PR00143 Citrate synthase signature 361 377 1.7E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 PRINTS PR00143 Citrate synthase signature 166 179 1.7E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 PRINTS PR00143 Citrate synthase signature 220 235 1.7E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 PRINTS PR00143 Citrate synthase signature 242 270 1.7E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 SUPERFAMILY SSF48256 5 430 4.58E-164 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 Pfam PF00285 Citrate synthase, C-terminal domain 49 413 1.1E-130 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 Gene3D G3DSA:1.10.580.10 58 413 3.9E-143 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 Gene3D G3DSA:2.20.28.60 2 51 5.6E-21 T 11-10-2018 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 14 424 1.7E-235 T 11-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 dqs_1677 d79857d2404ea0d139e46347f55cc485 431 Gene3D G3DSA:1.10.230.10 269 378 3.9E-143 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain dqs_1677 d79857d2404ea0d139e46347f55cc485 431 PIRSF PIRSF001369 38 431 2.5E-161 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type dqs_3341 157c3d409ee0bba00155d4f9e53e9789 563 Pfam PF00916 Sulfate permease family 21 371 5.8E-89 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 dqs_3341 157c3d409ee0bba00155d4f9e53e9789 563 Gene3D G3DSA:3.30.750.24 432 552 3.1E-26 T 11-10-2018 IPR036513 STAS domain superfamily dqs_3341 157c3d409ee0bba00155d4f9e53e9789 563 SUPERFAMILY SSF52091 447 548 1.47E-16 T 11-10-2018 IPR036513 STAS domain superfamily dqs_3341 157c3d409ee0bba00155d4f9e53e9789 563 Pfam PF01740 STAS domain 443 546 4.4E-14 T 11-10-2018 IPR002645 STAS domain dqs_3012 332c611f465633829f2f8eea04ecc5e4 311 Pfam PF01259 SAICAR synthetase 16 282 3.6E-97 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3012 332c611f465633829f2f8eea04ecc5e4 311 Gene3D G3DSA:3.30.200.20 5 104 5.0E-32 T 11-10-2018 dqs_3012 332c611f465633829f2f8eea04ecc5e4 311 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 13 307 24.712 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3012 332c611f465633829f2f8eea04ecc5e4 311 Gene3D G3DSA:3.30.470.20 106 263 1.7E-55 T 11-10-2018 dqs_3012 332c611f465633829f2f8eea04ecc5e4 311 ProSitePatterns PS01058 SAICAR synthetase signature 2. 219 227 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3012 332c611f465633829f2f8eea04ecc5e4 311 ProSitePatterns PS01057 SAICAR synthetase signature 1. 106 120 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3012 332c611f465633829f2f8eea04ecc5e4 311 SUPERFAMILY SSF56104 6 309 1.63E-99 T 11-10-2018 dqs_3012 332c611f465633829f2f8eea04ecc5e4 311 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 16 307 2.1E-75 T 11-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 dqs_0911 4cde0c6b985da5f96e575c6700d857e3 638 Gene3D G3DSA:3.20.20.540 222 535 6.9E-152 T 11-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 dqs_0911 4cde0c6b985da5f96e575c6700d857e3 638 Pfam PF01964 Radical SAM ThiC family 139 599 4.9E-199 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 dqs_0911 4cde0c6b985da5f96e575c6700d857e3 638 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 138 603 1.2E-215 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 dqs_0911 4cde0c6b985da5f96e575c6700d857e3 638 Pfam PF13667 ThiC-associated domain 21 98 1.3E-33 T 11-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 dqs_0911 4cde0c6b985da5f96e575c6700d857e3 638 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 138 604 99.598 T 11-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 SUPERFAMILY SSF55681 242 525 1.4E-97 T 11-10-2018 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 SMART SM00863 169 218 3.1E-25 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 34.148 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Gene3D G3DSA:3.30.980.10 69 221 5.2E-66 T 11-10-2018 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 169 218 6.0E-16 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Pfam PF02824 TGS domain 4 61 4.6E-9 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Gene3D G3DSA:3.10.20.30 3 63 9.2E-23 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 627 2.3E-222 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Gene3D G3DSA:3.30.54.20 130 186 5.2E-66 T 11-10-2018 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Pfam PF03129 Anticodon binding domain 540 625 2.6E-19 T 11-10-2018 IPR004154 Anticodon-binding dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 SUPERFAMILY SSF81271 3 61 2.01E-15 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 6.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 6.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 6.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 6.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 6.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 320 528 1.0E-44 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Gene3D G3DSA:3.40.50.800 531 635 5.9E-28 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 Gene3D G3DSA:3.30.930.10 222 530 3.8E-127 T 11-10-2018 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 SUPERFAMILY SSF52954 528 633 2.42E-29 T 11-10-2018 dqs_1188 3a2afbc80757c496dbb422dcb383e6f1 638 SUPERFAMILY SSF55186 64 240 2.35E-69 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 Pfam PF03561 Allantoicase repeat 32 178 1.9E-48 T 11-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 Pfam PF03561 Allantoicase repeat 201 341 6.4E-43 T 11-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 SUPERFAMILY SSF49785 22 181 1.53E-59 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 SUPERFAMILY SSF49785 191 344 1.06E-50 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 Hamap MF_00813 Probable allantoicase [alc]. 1 344 46.622 T 11-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 Gene3D G3DSA:2.60.120.260 15 182 1.3E-61 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 Gene3D G3DSA:2.60.120.260 184 346 7.0E-52 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 TIGRFAM TIGR02961 allantoicase: allantoicase 23 342 7.0E-135 T 11-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 dqs_1293 031ea28c8e7a5d0a72871875a64c4429 346 PIRSF PIRSF016516 11 345 1.2E-135 T 11-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 SUPERFAMILY SSF55729 276 402 6.83E-22 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 427 200.412 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 SUPERFAMILY SSF53633 2 278 3.01E-66 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 2 427 5.2E-169 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 Pfam PF00583 Acetyltransferase (GNAT) family 318 393 4.3E-11 T 11-10-2018 IPR000182 GNAT domain dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 Gene3D G3DSA:3.40.630.30 282 427 1.6E-39 T 11-10-2018 dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 Gene3D G3DSA:3.40.1160.10 1 279 8.1E-84 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 Pfam PF00696 Amino acid kinase family 14 253 3.0E-34 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 dqs_2969 369d28632a531f3b8c1a1a16f6ebc064 427 PIRSF PIRSF000423 1 427 4.4E-182 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 SUPERFAMILY SSF46689 382 482 4.21E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 193 206 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 SMART SM00448 10 121 2.3E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 Gene3D G3DSA:3.40.50.300 161 340 1.1E-60 T 11-10-2018 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 Pfam PF00158 Sigma-54 interaction domain 175 336 1.7E-63 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 Gene3D G3DSA:3.40.50.2300 9 145 2.3E-33 T 11-10-2018 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 382 391 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 Pfam PF02954 Bacterial regulatory protein, Fis family 440 480 1.6E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 Gene3D G3DSA:1.10.8.60 341 421 3.4E-19 T 11-10-2018 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 Pfam PF00072 Response regulator receiver domain 12 121 1.4E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 255 270 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 Gene3D G3DSA:1.10.10.60 422 484 5.3E-13 T 11-10-2018 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 463 483 1.2E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 463 1.2E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 SMART SM00382 189 332 2.2E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 SUPERFAMILY SSF52172 11 212 7.12E-36 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3957 3b777f62c8a3bfe2d4e67d6bf92804c8 485 SUPERFAMILY SSF52540 175 411 1.66E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SMART SM00387 449 559 3.9E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SMART SM00388 340 408 9.8E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 Gene3D G3DSA:3.30.565.10 409 558 2.6E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 79 189 8.0E-7 T 11-10-2018 IPR000014 PAS domain dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 190 314 4.4E-20 T 11-10-2018 IPR000014 PAS domain dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 516 1.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 502 1.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 539 1.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 558 1.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 Gene3D G3DSA:1.10.287.130 306 406 5.1E-18 T 11-10-2018 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SMART SM00086 267 309 6.8E-7 T 11-10-2018 IPR001610 PAC motif dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SMART SM00086 141 182 0.14 T 11-10-2018 IPR001610 PAC motif dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 Gene3D G3DSA:3.30.450.20 192 305 2.9E-25 T 11-10-2018 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 Gene3D G3DSA:3.30.450.20 71 191 2.8E-15 T 11-10-2018 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SUPERFAMILY SSF55785 80 191 1.5E-13 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 Pfam PF00989 PAS fold 195 306 5.6E-18 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SUPERFAMILY SSF55785 180 307 5.48E-29 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 Pfam PF08448 PAS fold 79 183 6.1E-5 T 11-10-2018 IPR013656 PAS fold-4 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SMART SM00091 66 136 300.0 T 11-10-2018 IPR000014 PAS domain dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SMART SM00091 194 260 2.1E-10 T 11-10-2018 IPR000014 PAS domain dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 Pfam PF00512 His Kinase A (phospho-acceptor) domain 342 406 1.5E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SUPERFAMILY SSF55874 407 557 4.98E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 SUPERFAMILY SSF47384 326 407 2.35E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1812 fd33b667a6f4e623dcfa406f3e912115 559 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 451 557 1.1E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0436 37262193d527a6ae56128847f2498c34 290 Pfam PF03547 Membrane transport protein 9 143 2.2E-7 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 dqs_0436 37262193d527a6ae56128847f2498c34 290 Pfam PF03547 Membrane transport protein 153 284 1.6E-10 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 dqs_1412 971521a9ae93b65de7e26e17f56e6e65 497 SMART SM01118 2 201 4.1E-35 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 dqs_1412 971521a9ae93b65de7e26e17f56e6e65 497 Gene3D G3DSA:2.40.320.10 1 198 1.1E-28 T 11-10-2018 dqs_1412 971521a9ae93b65de7e26e17f56e6e65 497 Gene3D G3DSA:1.40.20.10 208 489 7.4E-54 T 11-10-2018 IPR038186 CHAD domain superfamily dqs_1412 971521a9ae93b65de7e26e17f56e6e65 497 Pfam PF05235 CHAD domain 231 451 1.1E-43 T 11-10-2018 IPR007899 CHAD domain dqs_1412 971521a9ae93b65de7e26e17f56e6e65 497 SUPERFAMILY SSF55154 1 212 1.8E-42 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 dqs_1412 971521a9ae93b65de7e26e17f56e6e65 497 SMART SM00880 226 486 1.3E-61 T 11-10-2018 IPR007899 CHAD domain dqs_1412 971521a9ae93b65de7e26e17f56e6e65 497 Pfam PF01928 CYTH domain 3 195 2.8E-26 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 dqs_2135 dcbd074dccb45eb27755ca6d16e084da 734 SUPERFAMILY SSF52518 22 237 5.89E-29 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2135 dcbd074dccb45eb27755ca6d16e084da 734 SUPERFAMILY SSF52518 415 649 4.21E-35 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2135 dcbd074dccb45eb27755ca6d16e084da 734 Gene3D G3DSA:3.40.50.970 3 203 6.7E-25 T 11-10-2018 dqs_2135 dcbd074dccb45eb27755ca6d16e084da 734 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 456 600 1.6E-19 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 dqs_2135 dcbd074dccb45eb27755ca6d16e084da 734 Gene3D G3DSA:3.40.50.970 439 627 2.4E-14 T 11-10-2018 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 PRINTS PR00151 Porphobilinogen deaminase signature 152 169 1.3E-45 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 PRINTS PR00151 Porphobilinogen deaminase signature 85 104 1.3E-45 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 PRINTS PR00151 Porphobilinogen deaminase signature 54 74 1.3E-45 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 PRINTS PR00151 Porphobilinogen deaminase signature 133 150 1.3E-45 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 PRINTS PR00151 Porphobilinogen deaminase signature 239 256 1.3E-45 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 235 304 3.7E-18 T 11-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 Gene3D G3DSA:3.40.190.10 112 211 4.0E-79 T 11-10-2018 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 15 221 7.1E-74 T 11-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 15 306 4.3E-104 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 PIRSF PIRSF001438 1 316 4.9E-116 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 SUPERFAMILY SSF53850 14 227 1.45E-80 T 11-10-2018 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 240 256 - T 11-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 SUPERFAMILY SSF54782 229 314 2.88E-25 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 Gene3D G3DSA:3.30.160.40 231 315 6.6E-28 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 14 306 37.304 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1094 910b8bd31b9d3c012b4a6897d8b6612c 316 Gene3D G3DSA:3.40.190.10 15 216 4.0E-79 T 11-10-2018 dqs_0521 f1ca811396ec6777f288310bca9b710e 93 Hamap MF_00460 Protein RnfH [rnfH]. 1 91 21.632 T 11-10-2018 IPR005346 RnfH protein dqs_0521 f1ca811396ec6777f288310bca9b710e 93 Pfam PF03658 RnfH family Ubiquitin 1 83 3.6E-32 T 11-10-2018 IPR005346 RnfH protein dqs_0521 f1ca811396ec6777f288310bca9b710e 93 SUPERFAMILY SSF54285 1 75 8.18E-25 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp dqs_0521 f1ca811396ec6777f288310bca9b710e 93 Gene3D G3DSA:3.10.20.280 1 85 5.1E-27 T 11-10-2018 IPR037021 RnfH superfamily dqs_3417 bf13c8ae6339d1b73d9e0c5d6512592e 385 Gene3D G3DSA:3.40.50.2000 202 352 8.0E-54 T 11-10-2018 dqs_3417 bf13c8ae6339d1b73d9e0c5d6512592e 385 SUPERFAMILY SSF53756 11 376 4.93E-110 T 11-10-2018 dqs_3417 bf13c8ae6339d1b73d9e0c5d6512592e 385 Gene3D G3DSA:3.40.50.2000 4 200 1.4E-71 T 11-10-2018 dqs_3417 bf13c8ae6339d1b73d9e0c5d6512592e 385 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 36 372 1.3E-101 T 11-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 dqs_3417 bf13c8ae6339d1b73d9e0c5d6512592e 385 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 11 350 7.5E-90 T 11-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 dqs_2030 ec671a57a7914a04b99fb0fe45f3c4d2 294 Pfam PF00483 Nucleotidyl transferase 5 241 9.8E-67 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 dqs_2030 ec671a57a7914a04b99fb0fe45f3c4d2 294 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 5 289 1.1E-153 T 11-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 dqs_2030 ec671a57a7914a04b99fb0fe45f3c4d2 294 SUPERFAMILY SSF53448 4 290 2.05E-90 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2030 ec671a57a7914a04b99fb0fe45f3c4d2 294 Gene3D G3DSA:3.90.550.10 2 294 2.4E-83 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0307 96368ec5fa597edb0dcc0b8cbed00537 604 Pfam PF00144 Beta-lactamase 61 383 2.2E-57 T 11-10-2018 IPR001466 Beta-lactamase-related dqs_0307 96368ec5fa597edb0dcc0b8cbed00537 604 Gene3D G3DSA:3.40.710.10 53 383 6.3E-72 T 11-10-2018 dqs_0307 96368ec5fa597edb0dcc0b8cbed00537 604 SUPERFAMILY SSF56601 54 380 1.04E-71 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_0316 a1d2c209c46bd3b53d9efe5b676d1c63 440 SUPERFAMILY SSF56801 23 411 3.53E-66 T 11-10-2018 dqs_0316 a1d2c209c46bd3b53d9efe5b676d1c63 440 PIRSF PIRSF006444 4 439 3.0E-211 T 11-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 dqs_0316 a1d2c209c46bd3b53d9efe5b676d1c63 440 Gene3D G3DSA:3.30.300.30 331 438 1.3E-29 T 11-10-2018 dqs_0316 a1d2c209c46bd3b53d9efe5b676d1c63 440 Gene3D G3DSA:3.40.50.12780 3 330 2.8E-143 T 11-10-2018 dqs_0316 a1d2c209c46bd3b53d9efe5b676d1c63 440 Pfam PF14535 AMP-binding enzyme C-terminal domain 339 437 1.1E-24 T 11-10-2018 IPR028154 AMP-dependent ligase, C-terminal dqs_0316 a1d2c209c46bd3b53d9efe5b676d1c63 440 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 15 437 2.6E-235 T 11-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 dqs_0316 a1d2c209c46bd3b53d9efe5b676d1c63 440 Pfam PF00501 AMP-binding enzyme 86 293 8.7E-18 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 Pfam PF13394 4Fe-4S single cluster domain 26 84 7.0E-6 T 11-10-2018 dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 Gene3D G3DSA:3.20.20.70 18 291 2.1E-42 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 Pfam PF04055 Radical SAM superfamily 22 176 3.8E-23 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 Pfam PF13186 Iron-sulfur cluster-binding domain 246 312 1.1E-7 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 382 190.668 T 11-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 PIRSF PIRSF037420 2 358 1.1E-111 T 11-10-2018 IPR017200 Coenzyme PQQ synthesis protein E dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 12 357 3.5E-160 T 11-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 SUPERFAMILY SSF102114 15 321 1.96E-73 T 11-10-2018 dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 253 339 5.2E-8 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain dqs_1304 acb064b0f6d63e92ca226a320daaf882 384 SMART SM00729 17 223 0.001 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_1185 203f9f3a326ea4c25626232e9c693639 296 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 7 283 5.0E-67 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme dqs_1185 203f9f3a326ea4c25626232e9c693639 296 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 dqs_1185 203f9f3a326ea4c25626232e9c693639 296 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 294 1.4E-118 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 dqs_1185 203f9f3a326ea4c25626232e9c693639 296 Gene3D G3DSA:3.40.50.1100 37 142 5.2E-108 T 11-10-2018 dqs_1185 203f9f3a326ea4c25626232e9c693639 296 TIGRFAM TIGR01138 cysM: cysteine synthase B 5 294 5.8E-139 T 11-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 dqs_1185 203f9f3a326ea4c25626232e9c693639 296 Gene3D G3DSA:3.40.50.1100 10 290 5.2E-108 T 11-10-2018 dqs_1185 203f9f3a326ea4c25626232e9c693639 296 SUPERFAMILY SSF53686 3 291 2.49E-91 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 Gene3D G3DSA:1.10.10.1100 367 440 3.9E-18 T 11-10-2018 dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 215 231 3.9E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 3.9E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 3.9E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 Gene3D G3DSA:3.50.50.60 120 260 5.2E-34 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 Gene3D G3DSA:3.50.50.60 6 307 5.2E-34 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 SUPERFAMILY SSF51905 4 328 2.09E-34 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 306 6.0E-21 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 Pfam PF04324 BFD-like [2Fe-2S] binding domain 378 430 2.4E-7 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 4.5E-10 T 11-10-2018 dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.5E-10 T 11-10-2018 dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 284 306 4.5E-10 T 11-10-2018 dqs_0224 b020cb57a8571e9a9bb3cb62576daa55 460 PIRSF PIRSF037495 1 459 1.3E-135 T 11-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 SUPERFAMILY SSF46689 345 440 4.48E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 Pfam PF08448 PAS fold 15 114 6.0E-16 T 11-10-2018 IPR013656 PAS fold-4 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 SUPERFAMILY SSF52540 133 374 3.51E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 Pfam PF02954 Bacterial regulatory protein, Fis family 400 439 4.3E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 220 235 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 158 171 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 Gene3D G3DSA:1.10.8.60 305 379 1.4E-21 T 11-10-2018 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 Gene3D G3DSA:3.40.50.300 127 304 1.5E-61 T 11-10-2018 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 344 353 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 SMART SM00382 154 297 9.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 SUPERFAMILY SSF55785 10 116 2.28E-11 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 Pfam PF00158 Sigma-54 interaction domain 134 300 1.4E-65 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 Gene3D G3DSA:1.10.10.60 399 441 9.6E-7 T 11-10-2018 dqs_1349 3ebab4b01af8aebf46a6dccbee8251b1 454 Gene3D G3DSA:3.30.450.20 5 118 3.7E-12 T 11-10-2018 dqs_0345 a09033f48ac72e5749f9b1559a2e92a4 442 SUPERFAMILY SSF52151 39 433 1.62E-27 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase dqs_0345 a09033f48ac72e5749f9b1559a2e92a4 442 Pfam PF01734 Patatin-like phospholipase 41 319 3.3E-23 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 dqs_0345 a09033f48ac72e5749f9b1559a2e92a4 442 Gene3D G3DSA:3.40.1090.10 22 365 1.9E-33 T 11-10-2018 dqs_0402 d0858381af84da1dde5bb4b0d8958957 147 SMART SM00422 7 74 5.3E-20 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_0402 d0858381af84da1dde5bb4b0d8958957 147 Gene3D G3DSA:1.10.1660.10 1 144 9.7E-27 T 11-10-2018 dqs_0402 d0858381af84da1dde5bb4b0d8958957 147 Pfam PF13411 MerR HTH family regulatory protein 7 72 2.9E-16 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_0402 d0858381af84da1dde5bb4b0d8958957 147 SUPERFAMILY SSF46955 7 122 4.03E-25 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 Gene3D G3DSA:3.50.50.60 289 410 3.6E-121 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 SUPERFAMILY SSF55424 479 602 6.7E-40 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 Gene3D G3DSA:3.30.390.30 482 603 3.2E-47 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 136 158 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 444 451 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 286 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 312 337 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 566 586 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 544 559 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 184 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 479 500 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 415 1.9E-69 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 483 590 4.2E-36 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 Gene3D G3DSA:2.40.50.100 2 82 1.2E-22 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 Pfam PF00364 Biotin-requiring enzyme 5 75 2.1E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 SUPERFAMILY SSF51230 2 87 3.14E-23 T 11-10-2018 IPR011053 Single hybrid motif dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 134 597 5.5E-147 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 135 464 1.1E-55 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 SUPERFAMILY SSF51905 133 474 8.84E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 292 2.8E-37 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 429 451 2.8E-37 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 156 2.8E-37 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 312 330 2.8E-37 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 400 416 2.8E-37 T 11-10-2018 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 Gene3D G3DSA:3.50.50.60 135 469 3.6E-121 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 170 180 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 dqs_1493 1d3f1a411dc36a2411558e8abcfdf9ea 608 PIRSF PIRSF000350 30 602 5.7E-82 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 dqs_2162 f65be24d8218d57c678e4901775dbe14 380 Gene3D G3DSA:3.40.630.10 11 366 1.0E-129 T 11-10-2018 dqs_2162 f65be24d8218d57c678e4901775dbe14 380 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 6 379 52.654 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 dqs_2162 f65be24d8218d57c678e4901775dbe14 380 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 9 376 9.5E-164 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 dqs_2162 f65be24d8218d57c678e4901775dbe14 380 Pfam PF01546 Peptidase family M20/M25/M40 66 375 1.8E-44 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 dqs_2162 f65be24d8218d57c678e4901775dbe14 380 Gene3D G3DSA:3.30.70.360 183 296 1.0E-129 T 11-10-2018 dqs_2162 f65be24d8218d57c678e4901775dbe14 380 SUPERFAMILY SSF53187 8 377 6.29E-64 T 11-10-2018 dqs_2162 f65be24d8218d57c678e4901775dbe14 380 Pfam PF07687 Peptidase dimerisation domain 179 286 6.9E-26 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain dqs_2162 f65be24d8218d57c678e4901775dbe14 380 SUPERFAMILY SSF55031 183 292 1.08E-29 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain dqs_0052 76920116f47a2a7e597e243dc3bfa76a 197 Pfam PF06577 Protein of unknown function (DUF1134) 39 197 1.6E-73 T 11-10-2018 IPR008325 Uncharacterised conserved protein UCP033924 dqs_3289 51340ceb76caa91bd5e69319bff4e9c2 264 Pfam PF01066 CDP-alcohol phosphatidyltransferase 22 85 2.7E-13 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 dqs_3289 51340ceb76caa91bd5e69319bff4e9c2 264 Gene3D G3DSA:1.20.120.1760 7 142 9.9E-16 T 11-10-2018 dqs_3289 51340ceb76caa91bd5e69319bff4e9c2 264 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 63 85 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 dqs_3289 51340ceb76caa91bd5e69319bff4e9c2 264 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 29 189 3.0E-33 T 11-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 dqs_2331 5ffb2e9fee5727cfcb556acfc5826cd7 485 SUPERFAMILY SSF88723 30 181 2.94E-10 T 11-10-2018 IPR029060 PIN-like domain superfamily dqs_2331 5ffb2e9fee5727cfcb556acfc5826cd7 485 Pfam PF02562 PhoH-like protein 272 476 5.0E-54 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 dqs_2331 5ffb2e9fee5727cfcb556acfc5826cd7 485 Gene3D G3DSA:3.40.50.1010 25 179 1.9E-24 T 11-10-2018 dqs_2331 5ffb2e9fee5727cfcb556acfc5826cd7 485 SMART SM00670 29 164 5.4E-15 T 11-10-2018 IPR002716 PIN domain dqs_2331 5ffb2e9fee5727cfcb556acfc5826cd7 485 Pfam PF13638 PIN domain 31 176 2.3E-40 T 11-10-2018 IPR002716 PIN domain dqs_2331 5ffb2e9fee5727cfcb556acfc5826cd7 485 SUPERFAMILY SSF52540 271 463 8.04E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2331 5ffb2e9fee5727cfcb556acfc5826cd7 485 Gene3D G3DSA:3.40.50.300 270 484 4.4E-66 T 11-10-2018 dqs_2057 7d350fd0f684245c1af641b91598857a 454 SUPERFAMILY SSF50156 198 290 1.45E-15 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_2057 7d350fd0f684245c1af641b91598857a 454 Gene3D G3DSA:2.30.42.10 221 307 3.3E-23 T 11-10-2018 dqs_2057 7d350fd0f684245c1af641b91598857a 454 Gene3D G3DSA:2.30.42.10 127 220 1.5E-15 T 11-10-2018 dqs_2057 7d350fd0f684245c1af641b91598857a 454 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 7 452 1.8E-115 T 11-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 dqs_2057 7d350fd0f684245c1af641b91598857a 454 Pfam PF13180 PDZ domain 228 288 1.3E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2057 7d350fd0f684245c1af641b91598857a 454 Pfam PF02163 Peptidase family M50 10 439 1.4E-81 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 dqs_2057 7d350fd0f684245c1af641b91598857a 454 SMART SM00228 115 187 0.32 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2057 7d350fd0f684245c1af641b91598857a 454 SMART SM00228 196 280 7.3E-6 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2057 7d350fd0f684245c1af641b91598857a 454 SUPERFAMILY SSF50156 86 184 4.07E-10 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_0807 ca77df05fa40ac76dd05799703bad4bc 245 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 237 1.1E-27 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 dqs_0807 ca77df05fa40ac76dd05799703bad4bc 245 SUPERFAMILY SSF53067 1 113 4.53E-23 T 11-10-2018 dqs_0807 ca77df05fa40ac76dd05799703bad4bc 245 SUPERFAMILY SSF53067 115 238 4.96E-31 T 11-10-2018 dqs_0807 ca77df05fa40ac76dd05799703bad4bc 245 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 242 19.073 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 dqs_0807 ca77df05fa40ac76dd05799703bad4bc 245 Pfam PF03309 Type III pantothenate kinase 2 195 1.1E-55 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 dqs_0807 ca77df05fa40ac76dd05799703bad4bc 245 Gene3D G3DSA:3.30.420.490 117 230 8.5E-70 T 11-10-2018 dqs_0807 ca77df05fa40ac76dd05799703bad4bc 245 Gene3D G3DSA:3.30.420.40 3 235 8.5E-70 T 11-10-2018 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 SUPERFAMILY SSF88723 1 165 7.85E-55 T 11-10-2018 IPR029060 PIN-like domain superfamily dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 SMART SM00482 676 882 2.5E-115 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 SMART SM00474 321 507 1.4E-32 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Gene3D G3DSA:1.10.150.20 169 241 1.6E-90 T 11-10-2018 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 SMART SM00475 1 256 3.3E-119 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Pfam PF00476 DNA polymerase family A 542 916 9.1E-150 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 TIGRFAM TIGR00593 pola: DNA polymerase I 4 918 7.3E-275 T 11-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Gene3D G3DSA:3.40.50.1010 4 272 1.6E-90 T 11-10-2018 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Gene3D G3DSA:3.30.70.370 654 914 2.6E-108 T 11-10-2018 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 ProSitePatterns PS00447 DNA polymerase family A signature. 744 763 - T 11-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Gene3D G3DSA:1.10.150.20 699 842 2.6E-108 T 11-10-2018 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Gene3D G3DSA:1.20.1060.10 533 648 1.2E-39 T 11-10-2018 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Gene3D G3DSA:3.30.420.10 320 532 8.2E-65 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Pfam PF01612 3'-5' exonuclease 326 507 2.4E-37 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 SMART SM00279 168 203 8.0E-13 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 165 1.3E-49 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 SUPERFAMILY SSF47807 166 278 7.78E-32 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 SUPERFAMILY SSF56672 513 918 2.45E-153 T 11-10-2018 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 259 1.4E-27 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 SUPERFAMILY SSF53098 325 507 2.7E-53 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 645 667 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 781 792 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 803 814 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 835 851 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 744 769 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 690 713 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 720 733 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 668 683 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3743 ad75de0e9ba39f0823c42b24ba493a57 918 PRINTS PR00868 DNA-polymerase family A (pol I) signature 865 878 4.6E-76 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_0896 399c9e680092501b4750bafcdd505d15 316 Gene3D G3DSA:3.40.50.720 96 284 4.4E-111 T 11-10-2018 dqs_0896 399c9e680092501b4750bafcdd505d15 316 SUPERFAMILY SSF52283 11 135 2.98E-29 T 11-10-2018 dqs_0896 399c9e680092501b4750bafcdd505d15 316 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 193 215 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site dqs_0896 399c9e680092501b4750bafcdd505d15 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 285 9.8E-55 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 dqs_0896 399c9e680092501b4750bafcdd505d15 316 Gene3D G3DSA:3.40.50.720 24 313 4.4E-111 T 11-10-2018 dqs_0896 399c9e680092501b4750bafcdd505d15 316 SUPERFAMILY SSF51735 100 286 2.66E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0896 399c9e680092501b4750bafcdd505d15 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 313 7.4E-24 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 34 593 8.5E-183 T 11-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 Gene3D G3DSA:3.20.70.20 10 600 5.3E-193 T 11-10-2018 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 Pfam PF02867 Ribonucleotide reductase, barrel domain 93 585 5.3E-144 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 SUPERFAMILY SSF51998 16 605 1.19E-174 T 11-10-2018 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 PRINTS PR01183 Ribonucleotide reductase large chain signature 293 304 2.7E-25 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 PRINTS PR01183 Ribonucleotide reductase large chain signature 397 420 2.7E-25 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 PRINTS PR01183 Ribonucleotide reductase large chain signature 369 391 2.7E-25 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 PRINTS PR01183 Ribonucleotide reductase large chain signature 331 354 2.7E-25 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 PRINTS PR01183 Ribonucleotide reductase large chain signature 174 193 2.7E-25 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 dqs_1535 6fd30a0bdb90519fc6fc27c6d6a19f4f 958 PRINTS PR01183 Ribonucleotide reductase large chain signature 453 480 2.7E-25 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 dqs_3422 9df115c4bc070a8f1f478e77dcec4e8c 173 Gene3D G3DSA:3.10.560.10 82 170 3.1E-17 T 11-10-2018 dqs_3422 9df115c4bc070a8f1f478e77dcec4e8c 173 Pfam PF02563 Polysaccharide biosynthesis/export protein 6 79 1.8E-20 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 dqs_3422 9df115c4bc070a8f1f478e77dcec4e8c 173 TIGRFAM TIGR03027 pepcterm_export: putative polysaccharide export protein, PEP-CTERM sytem-associated 10 173 3.3E-76 T 11-10-2018 IPR017477 PEP-CTERM, putative polysaccharide export protein dqs_3422 9df115c4bc070a8f1f478e77dcec4e8c 173 Gene3D G3DSA:3.30.1950.10 15 81 1.1E-11 T 11-10-2018 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 SUPERFAMILY SSF52172 8 191 1.57E-30 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 360 369 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 Gene3D G3DSA:1.10.10.60 397 451 1.2E-14 T 11-10-2018 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 Pfam PF00158 Sigma-54 interaction domain 149 313 2.8E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 SUPERFAMILY SSF46689 360 448 6.05E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 233 248 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 SUPERFAMILY SSF52540 147 388 5.6E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 Gene3D G3DSA:1.10.8.60 318 396 2.6E-22 T 11-10-2018 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 Pfam PF00072 Response regulator receiver domain 9 118 9.7E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 Gene3D G3DSA:3.40.50.2300 2 139 1.1E-23 T 11-10-2018 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 Gene3D G3DSA:3.40.50.300 140 317 1.9E-64 T 11-10-2018 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 Pfam PF02954 Bacterial regulatory protein, Fis family 406 441 2.1E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 TIGRFAM TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor 8 449 1.2E-228 T 11-10-2018 IPR014264 Signal transduction response regulator, PEP-CTERM system, putative dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 SMART SM00382 167 310 9.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 SMART SM00448 6 120 1.4E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 449 3.2E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3324 fe5969eba79433164ee0440ffbaefd63 452 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 412 429 3.2E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2887 c7f0d002c2eb1f4a5013b4ee3f216f31 281 SUPERFAMILY SSF103481 176 277 1.28E-11 T 11-10-2018 dqs_2887 c7f0d002c2eb1f4a5013b4ee3f216f31 281 SUPERFAMILY SSF103481 35 133 2.09E-15 T 11-10-2018 dqs_2887 c7f0d002c2eb1f4a5013b4ee3f216f31 281 Pfam PF00892 EamA-like transporter family 3 131 5.9E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_2887 c7f0d002c2eb1f4a5013b4ee3f216f31 281 Pfam PF00892 EamA-like transporter family 141 273 8.6E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0415 8ad92060158b28b54ee8c45af742b169 196 Pfam PF03975 CheD chemotactic sensory transduction 58 162 1.6E-26 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 dqs_0415 8ad92060158b28b54ee8c45af742b169 196 SUPERFAMILY SSF64438 18 168 1.01E-43 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic dqs_0415 8ad92060158b28b54ee8c45af742b169 196 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 11 166 26.127 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 dqs_0415 8ad92060158b28b54ee8c45af742b169 196 Gene3D G3DSA:3.30.1330.200 14 172 2.9E-45 T 11-10-2018 IPR038592 CheD-like superfamily dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 Gene3D G3DSA:3.30.499.10 407 534 2.0E-148 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 Gene3D G3DSA:1.25.40.310 1 161 1.1E-66 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 857 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 SUPERFAMILY SSF52016 163 374 2.75E-65 T 11-10-2018 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 SUPERFAMILY SSF53732 382 857 1.44E-142 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 Gene3D G3DSA:3.40.1060.10 387 686 2.0E-148 T 11-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 ProSitePatterns PS00450 Aconitase family signature 1. 707 724 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 384 2.2E-92 T 11-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 Gene3D G3DSA:3.20.19.10 163 363 6.7E-68 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 SUPERFAMILY SSF74778 2 160 7.19E-66 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 Pfam PF00330 Aconitase family (aconitate hydratase) 473 822 3.7E-36 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 PIRSF PIRSF036687 1 863 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 1.1E-63 T 11-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 dqs_1657 a18ac50c8376278f738e9501e1278a9a 865 Gene3D G3DSA:3.30.499.10 688 865 3.5E-65 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 dqs_3024 464328e667b1339c35c1b518491fe5e2 265 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 11-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 dqs_3024 464328e667b1339c35c1b518491fe5e2 265 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 9 258 3.1E-82 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 dqs_3024 464328e667b1339c35c1b518491fe5e2 265 Gene3D G3DSA:3.40.50.150 2 192 9.9E-65 T 11-10-2018 dqs_3024 464328e667b1339c35c1b518491fe5e2 265 SMART SM00650 25 193 1.2E-79 T 11-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 dqs_3024 464328e667b1339c35c1b518491fe5e2 265 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 260 56.31 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 dqs_3024 464328e667b1339c35c1b518491fe5e2 265 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 259 3.1E-58 T 11-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm dqs_3024 464328e667b1339c35c1b518491fe5e2 265 Gene3D G3DSA:1.10.8.100 198 265 4.3E-24 T 11-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 dqs_3024 464328e667b1339c35c1b518491fe5e2 265 SUPERFAMILY SSF53335 7 259 1.12E-76 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_4114 ee07df3083af23b8780fae08a8777f33 375 Gene3D G3DSA:1.10.1740.110 184 289 2.0E-137 T 11-10-2018 dqs_4114 ee07df3083af23b8780fae08a8777f33 375 Gene3D G3DSA:3.40.50.1820 23 359 2.0E-137 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_4114 ee07df3083af23b8780fae08a8777f33 375 PIRSF PIRSF000443 1 375 5.9E-137 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 dqs_4114 ee07df3083af23b8780fae08a8777f33 375 Pfam PF00561 alpha/beta hydrolase fold 48 358 9.5E-36 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_4114 ee07df3083af23b8780fae08a8777f33 375 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 18 368 7.2E-139 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 dqs_4114 ee07df3083af23b8780fae08a8777f33 375 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 2 371 29.439 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 dqs_4114 ee07df3083af23b8780fae08a8777f33 375 SUPERFAMILY SSF53474 12 372 2.03E-104 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1149 7fe32dd0561ec4185330140334d4cb49 354 SUPERFAMILY SSF53659 1 354 2.69E-123 T 11-10-2018 dqs_1149 7fe32dd0561ec4185330140334d4cb49 354 Gene3D G3DSA:3.40.718.10 1 354 6.4E-153 T 11-10-2018 dqs_1149 7fe32dd0561ec4185330140334d4cb49 354 SMART SM01329 2 350 5.1E-209 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 dqs_1149 7fe32dd0561ec4185330140334d4cb49 354 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 241 260 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 dqs_1149 7fe32dd0561ec4185330140334d4cb49 354 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 2 350 1.0E-134 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 dqs_1149 7fe32dd0561ec4185330140334d4cb49 354 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 2 349 8.1E-156 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 dqs_1149 7fe32dd0561ec4185330140334d4cb49 354 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 1 354 52.493 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 dqs_0042 282647945a792c59c7c593198c5c0a3b 162 SUPERFAMILY SSF51182 29 151 4.8E-29 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_0042 282647945a792c59c7c593198c5c0a3b 162 Pfam PF12973 ChrR Cupin-like domain 36 122 9.7E-16 T 11-10-2018 IPR025979 ChrR-like cupin domain dqs_0042 282647945a792c59c7c593198c5c0a3b 162 Gene3D G3DSA:2.60.120.10 25 162 9.4E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 SMART SM00098 55 515 9.4E-160 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 Gene3D G3DSA:3.40.720.10 25 521 1.1E-176 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 PRINTS PR00113 Alkaline phosphatase signature 54 74 2.6E-47 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 PRINTS PR00113 Alkaline phosphatase signature 110 125 2.6E-47 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 PRINTS PR00113 Alkaline phosphatase signature 159 179 2.6E-47 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 PRINTS PR00113 Alkaline phosphatase signature 308 337 2.6E-47 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 PRINTS PR00113 Alkaline phosphatase signature 218 228 2.6E-47 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 Pfam PF00245 Alkaline phosphatase 54 514 4.3E-126 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 dqs_3999 78f734d47078513bb1d0b687f09a5dbb 524 SUPERFAMILY SSF53649 29 515 5.23E-151 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 dqs_2958 883712ea217dbef7b34dd81e54a67a07 218 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 9 189 4.8E-54 T 11-10-2018 IPR010237 Pyrimidine 5-nucleotidase dqs_2958 883712ea217dbef7b34dd81e54a67a07 218 Gene3D G3DSA:1.10.150.450 21 77 2.4E-9 T 11-10-2018 dqs_2958 883712ea217dbef7b34dd81e54a67a07 218 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 10 189 5.8E-18 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_2958 883712ea217dbef7b34dd81e54a67a07 218 SUPERFAMILY SSF56784 9 199 5.32E-33 T 11-10-2018 IPR036412 HAD-like superfamily dqs_2958 883712ea217dbef7b34dd81e54a67a07 218 Gene3D G3DSA:3.40.50.1000 78 216 5.4E-27 T 11-10-2018 IPR023214 HAD superfamily dqs_2958 883712ea217dbef7b34dd81e54a67a07 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 189 2.4E-13 T 11-10-2018 dqs_1099 390c82ff1e4024fd831c3efa92406bd2 499 Gene3D G3DSA:3.30.465.40 25 251 7.3E-62 T 11-10-2018 dqs_1099 390c82ff1e4024fd831c3efa92406bd2 499 SUPERFAMILY SSF55103 204 474 2.13E-75 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 dqs_1099 390c82ff1e4024fd831c3efa92406bd2 499 Pfam PF01565 FAD binding domain 56 194 4.3E-39 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 dqs_1099 390c82ff1e4024fd831c3efa92406bd2 499 SUPERFAMILY SSF56176 20 231 3.97E-68 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_1099 390c82ff1e4024fd831c3efa92406bd2 499 Gene3D G3DSA:3.30.70.2740 350 431 1.5E-7 T 11-10-2018 dqs_1099 390c82ff1e4024fd831c3efa92406bd2 499 Pfam PF02913 FAD linked oxidases, C-terminal domain 231 470 1.3E-65 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 dqs_2782 5808f3bd598235cefa85790fb78ca6fb 178 SUPERFAMILY SSF48452 2 174 4.55E-66 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2782 5808f3bd598235cefa85790fb78ca6fb 178 Pfam PF06041 Bacterial protein of unknown function (DUF924) 5 175 5.3E-60 T 11-10-2018 IPR010323 Protein of unknown function DUF924 dqs_2782 5808f3bd598235cefa85790fb78ca6fb 178 Gene3D G3DSA:1.25.40.10 78 178 1.9E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2782 5808f3bd598235cefa85790fb78ca6fb 178 Gene3D G3DSA:1.20.58.320 1 77 7.2E-26 T 11-10-2018 dqs_2695 76573de62f2b70f83b9878f1981b2d02 146 Gene3D G3DSA:1.10.700.10 2 128 1.0E-59 T 11-10-2018 IPR036622 Dioxygenase LigAB, LigA subunit superfamily dqs_2695 76573de62f2b70f83b9878f1981b2d02 146 Pfam PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit 27 112 6.3E-38 T 11-10-2018 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit dqs_2695 76573de62f2b70f83b9878f1981b2d02 146 TIGRFAM TIGR02792 PCA_ligA: protocatechuate 4,5-dioxygenase, alpha subunit 7 123 8.3E-73 T 11-10-2018 IPR014159 Protocatechuate 4,5-dioxygenase, alpha subunit KEGG: 00362+1.13.11.8|KEGG: 00624+1.13.11.8|KEGG: 00627+1.13.11.8|MetaCyc: PWY-6216|MetaCyc: PWY-6217 dqs_2695 76573de62f2b70f83b9878f1981b2d02 146 SUPERFAMILY SSF48076 4 127 3.01E-53 T 11-10-2018 IPR036622 Dioxygenase LigAB, LigA subunit superfamily dqs_1439 99c88f458ddc7f3c9d0149d4ccdea1e7 284 SUPERFAMILY SSF53335 36 261 1.34E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1439 99c88f458ddc7f3c9d0149d4ccdea1e7 284 Pfam PF13649 Methyltransferase domain 63 155 2.3E-19 T 11-10-2018 dqs_1439 99c88f458ddc7f3c9d0149d4ccdea1e7 284 Gene3D G3DSA:3.40.50.150 21 261 7.3E-32 T 11-10-2018 dqs_0634 c167b679cd8760e8a4eef1c6ab095d1c 391 Pfam PF07676 WD40-like Beta Propeller Repeat 255 272 0.26 T 11-10-2018 IPR011659 WD40-like Beta Propeller dqs_0634 c167b679cd8760e8a4eef1c6ab095d1c 391 SUPERFAMILY SSF50969 5 300 1.33E-40 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like dqs_0634 c167b679cd8760e8a4eef1c6ab095d1c 391 Pfam PF08662 Eukaryotic translation initiation factor eIF2A 85 199 1.3E-5 T 11-10-2018 IPR013979 Translation initiation factor, beta propellor-like domain dqs_0634 c167b679cd8760e8a4eef1c6ab095d1c 391 Gene3D G3DSA:2.130.10.10 127 321 3.9E-18 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_0634 c167b679cd8760e8a4eef1c6ab095d1c 391 Gene3D G3DSA:2.120.10.30 19 123 2.8E-10 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like dqs_3145 0f1e67e7edc7fb497b6a6e95e5582d9d 200 Pfam PF07883 Cupin domain 130 192 8.2E-12 T 11-10-2018 IPR013096 Cupin 2, conserved barrel dqs_3145 0f1e67e7edc7fb497b6a6e95e5582d9d 200 Gene3D G3DSA:2.60.120.10 89 193 9.2E-24 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3145 0f1e67e7edc7fb497b6a6e95e5582d9d 200 Pfam PF01381 Helix-turn-helix 20 72 2.9E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_3145 0f1e67e7edc7fb497b6a6e95e5582d9d 200 SUPERFAMILY SSF47413 14 79 1.64E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_3145 0f1e67e7edc7fb497b6a6e95e5582d9d 200 SUPERFAMILY SSF51182 67 198 5.34E-26 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3145 0f1e67e7edc7fb497b6a6e95e5582d9d 200 Gene3D G3DSA:1.10.260.40 10 88 3.2E-18 T 11-10-2018 dqs_3145 0f1e67e7edc7fb497b6a6e95e5582d9d 200 SMART SM00530 19 74 3.2E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_2669 af09a14d99d89603b64262e42c702c58 338 Pfam PF04773 FecR protein 131 223 6.2E-17 T 11-10-2018 IPR006860 FecR protein dqs_2669 af09a14d99d89603b64262e42c702c58 338 Pfam PF16220 Domain of unknown function (DUF4880) 24 65 2.6E-13 T 11-10-2018 IPR032623 FecR, N-terminal dqs_2669 af09a14d99d89603b64262e42c702c58 338 Gene3D G3DSA:2.60.120.1440 121 257 3.5E-18 T 11-10-2018 dqs_2669 af09a14d99d89603b64262e42c702c58 338 PIRSF PIRSF018266 16 336 1.2E-85 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component dqs_0012 2a872abf8c592dc984d3757fa8ec07fc 294 SUPERFAMILY SSF52540 3 162 1.64E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0012 2a872abf8c592dc984d3757fa8ec07fc 294 Pfam PF05621 Bacterial TniB protein 3 215 4.8E-19 T 11-10-2018 IPR008868 Bacterial TniB dqs_0012 2a872abf8c592dc984d3757fa8ec07fc 294 Gene3D G3DSA:3.40.50.300 2 151 1.3E-8 T 11-10-2018 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 SUPERFAMILY SSF56645 2 238 3.93E-87 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 PIRSF PIRSF016578 3 191 6.0E-13 T 11-10-2018 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 PIRSF PIRSF016578 212 376 4.1E-13 T 11-10-2018 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 2.4E-53 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 SUPERFAMILY SSF47203 226 375 7.57E-61 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 Gene3D G3DSA:1.10.540.10 1 118 4.2E-44 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 116 2.7E-38 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 1.1E-27 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 Gene3D G3DSA:2.40.110.10 119 231 9.9E-45 T 11-10-2018 dqs_0405 d8e195d10548f220324e1b7a93949edf 377 Gene3D G3DSA:1.20.140.10 232 377 4.4E-59 T 11-10-2018 dqs_3416 9fe7ea018f6e2cbde6c9131fc0ba4973 286 SUPERFAMILY SSF88713 15 261 1.36E-44 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 dqs_3416 9fe7ea018f6e2cbde6c9131fc0ba4973 286 TIGRFAM TIGR03006 pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily 14 282 9.2E-137 T 11-10-2018 IPR014344 PEP-CTERM locus, polysaccharide deactylase dqs_3416 9fe7ea018f6e2cbde6c9131fc0ba4973 286 Pfam PF11959 Domain of unknown function (DUF3473) 156 282 9.3E-55 T 11-10-2018 IPR022560 Domain of unknown function DUF3473 dqs_3416 9fe7ea018f6e2cbde6c9131fc0ba4973 286 Gene3D G3DSA:3.20.20.370 5 272 1.5E-46 T 11-10-2018 dqs_3416 9fe7ea018f6e2cbde6c9131fc0ba4973 286 Pfam PF01522 Polysaccharide deacetylase 46 154 1.6E-19 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 PRINTS PR00340 P-II protein signature 2 17 4.9E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 PRINTS PR00340 P-II protein signature 23 41 4.9E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 PRINTS PR00340 P-II protein signature 52 75 4.9E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 PRINTS PR00340 P-II protein signature 83 103 4.9E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 SMART SM00938 4 105 5.4E-62 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 SUPERFAMILY SSF54913 1 112 1.72E-43 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 PIRSF PIRSF039144 1 112 4.6E-52 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 Gene3D G3DSA:3.30.70.120 1 112 1.7E-44 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal dqs_3150 74be2648f768549c94fbd8e0f31a7940 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 8.0E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3660 b5cd9b3d690ffc08b284a844e6f7eda7 492 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 490 212.235 T 11-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 dqs_3660 b5cd9b3d690ffc08b284a844e6f7eda7 492 SUPERFAMILY SSF52540 6 240 1.17E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3660 b5cd9b3d690ffc08b284a844e6f7eda7 492 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 7 482 7.3E-144 T 11-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 dqs_3660 b5cd9b3d690ffc08b284a844e6f7eda7 492 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 232 1.8E-23 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_3660 b5cd9b3d690ffc08b284a844e6f7eda7 492 Gene3D G3DSA:3.40.50.880 256 394 1.2E-16 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3660 b5cd9b3d690ffc08b284a844e6f7eda7 492 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 256 439 2.2E-57 T 11-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 dqs_3660 b5cd9b3d690ffc08b284a844e6f7eda7 492 Gene3D G3DSA:3.40.50.300 3 241 7.6E-56 T 11-10-2018 dqs_3660 b5cd9b3d690ffc08b284a844e6f7eda7 492 SUPERFAMILY SSF52317 255 449 2.37E-39 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 SUPERFAMILY SSF55781 317 461 2.67E-11 T 11-10-2018 dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 SUPERFAMILY SSF55874 541 675 7.99E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 Gene3D G3DSA:3.30.450.40 300 462 5.8E-8 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 571 676 2.1E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 SMART SM00387 569 677 1.1E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 TIGRFAM TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase 6 674 4.5E-255 T 11-10-2018 IPR014265 Signal transduction histidine kinase, PEP-CTERM system, putative dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 Gene3D G3DSA:3.30.565.10 530 674 4.0E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 655 4.9E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 607 621 4.9E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 636 4.9E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 674 4.9E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3325 495e4ebcaae8a82dfe5b1ff9768fac49 692 Gene3D G3DSA:1.10.287.130 472 529 4.0E-31 T 11-10-2018 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 154 161 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 SMART SM00846 3 156 2.8E-86 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 Gene3D G3DSA:3.30.360.10 155 319 3.0E-147 T 11-10-2018 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 177 193 3.9E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 3.9E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 273 288 3.9E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 150 168 3.9E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 233 250 3.9E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 329 2.3E-129 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 SUPERFAMILY SSF51735 1 182 1.62E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 PIRSF PIRSF000149 1 338 2.0E-138 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 161 317 3.7E-69 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 106 1.2E-33 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 Gene3D G3DSA:3.40.50.720 4 329 3.0E-147 T 11-10-2018 dqs_2976 88a19103749b1181ebefd95c5d984c5d 338 SUPERFAMILY SSF55347 156 318 2.77E-73 T 11-10-2018 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 SUPERFAMILY SSF52096 27 209 1.76E-76 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 106 117 - T 11-10-2018 IPR018215 ClpP, Ser active site dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 18 207 3.5E-107 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 Gene3D G3DSA:3.90.226.10 10 211 5.2E-85 T 11-10-2018 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 128 141 - T 11-10-2018 IPR033135 ClpP, histidine active site dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 19 209 45.085 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 PRINTS PR00127 Clp protease catalytic subunit P signature 184 203 1.2E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 PRINTS PR00127 Clp protease catalytic subunit P signature 35 50 1.2E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 PRINTS PR00127 Clp protease catalytic subunit P signature 106 123 1.2E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 PRINTS PR00127 Clp protease catalytic subunit P signature 127 146 1.2E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 PRINTS PR00127 Clp protease catalytic subunit P signature 75 95 1.2E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 dqs_2200 1d71ba858f04af9fb92ee320087da88c 212 Pfam PF00574 Clp protease 29 208 1.2E-89 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 SUPERFAMILY SSF52242 11 150 2.75E-40 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 Pfam PF02310 B12 binding domain 20 123 3.9E-10 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 722 1086 2.1E-91 T 11-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 SUPERFAMILY SSF51703 509 1084 2.22E-150 T 11-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 Pfam PF01642 Methylmalonyl-CoA mutase 563 1082 1.9E-146 T 11-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 SUPERFAMILY SSF52540 157 468 9.87E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 Gene3D G3DSA:3.20.20.240 552 1084 1.9E-183 T 11-10-2018 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 Gene3D G3DSA:3.40.50.300 203 411 1.7E-60 T 11-10-2018 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 Pfam PF03308 ArgK protein 176 469 8.6E-43 T 11-10-2018 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 Hamap MF_02050 Fused isobutyryl-CoA mutase [icmF]. 18 1088 17.01 T 11-10-2018 IPR033669 Fused isobutyryl-CoA mutase GO:0003924|GO:0005525|GO:0006637|GO:0031419|GO:0034784|GO:0047727 dqs_0766 a0ac332d85c51bdbd3d2e97543d72bb8 1088 Gene3D G3DSA:3.40.50.280 14 157 4.1E-58 T 11-10-2018 dqs_0091 3a139bffd6a8618872ad7975d9688deb 175 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 56 171 2.4E-26 T 11-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal dqs_0091 3a139bffd6a8618872ad7975d9688deb 175 SUPERFAMILY SSF50630 59 162 2.39E-17 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily dqs_0091 3a139bffd6a8618872ad7975d9688deb 175 Gene3D G3DSA:2.40.70.10 52 172 1.6E-31 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily dqs_0091 3a139bffd6a8618872ad7975d9688deb 175 Pfam PF13975 gag-polyprotein putative aspartyl protease 69 157 4.0E-22 T 11-10-2018 dqs_2171 e24bceadde86acc045de87ebbb8da082 403 PIRSF PIRSF005572 3 383 1.5E-137 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 dqs_2171 e24bceadde86acc045de87ebbb8da082 403 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 196 215 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site dqs_2171 e24bceadde86acc045de87ebbb8da082 403 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 2 403 4.5E-228 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 dqs_2171 e24bceadde86acc045de87ebbb8da082 403 Gene3D G3DSA:3.40.640.10 17 261 1.0E-165 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2171 e24bceadde86acc045de87ebbb8da082 403 Pfam PF00266 Aminotransferase class-V 6 367 2.7E-89 T 11-10-2018 IPR000192 Aminotransferase class V domain dqs_2171 e24bceadde86acc045de87ebbb8da082 403 Gene3D G3DSA:3.90.1150.10 6 374 1.0E-165 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2171 e24bceadde86acc045de87ebbb8da082 403 SUPERFAMILY SSF53383 5 390 1.97E-115 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2171 e24bceadde86acc045de87ebbb8da082 403 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 2 394 55.21 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 dqs_1220 328c6874cf48026c455b094964cffee2 540 SMART SM00283 264 539 1.4E-45 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1220 328c6874cf48026c455b094964cffee2 540 Pfam PF00672 HAMP domain 213 250 1.1E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1220 328c6874cf48026c455b094964cffee2 540 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 347 506 6.7E-35 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1220 328c6874cf48026c455b094964cffee2 540 SMART SM00304 211 263 9.2E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1220 328c6874cf48026c455b094964cffee2 540 Gene3D G3DSA:1.10.287.950 210 540 1.6E-62 T 11-10-2018 dqs_1220 328c6874cf48026c455b094964cffee2 540 SUPERFAMILY SSF58104 231 540 6.28E-57 T 11-10-2018 dqs_0024 9b453741fa9dc010bcef8240ee732597 185 Pfam PF00258 Flavodoxin 7 169 5.7E-24 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 dqs_0024 9b453741fa9dc010bcef8240ee732597 185 TIGRFAM TIGR01752 flav_long: flavodoxin 3 176 3.3E-53 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 dqs_0024 9b453741fa9dc010bcef8240ee732597 185 SUPERFAMILY SSF52218 1 177 4.97E-38 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_0024 9b453741fa9dc010bcef8240ee732597 185 Gene3D G3DSA:3.40.50.360 1 180 5.0E-43 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_0024 9b453741fa9dc010bcef8240ee732597 185 PIRSF PIRSF038996 1 181 1.9E-50 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 dqs_0734 1efcc9b3db1c41a96fff8d71bb8c9cbf 452 SUPERFAMILY SSF52799 299 440 2.26E-18 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like dqs_0734 1efcc9b3db1c41a96fff8d71bb8c9cbf 452 Pfam PF00782 Dual specificity phosphatase, catalytic domain 366 440 4.1E-7 T 11-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 dqs_0734 1efcc9b3db1c41a96fff8d71bb8c9cbf 452 SMART SM00195 311 446 0.0056 T 11-10-2018 IPR020422 Dual specificity protein phosphatase domain GO:0006470|GO:0008138 dqs_0734 1efcc9b3db1c41a96fff8d71bb8c9cbf 452 Gene3D G3DSA:3.90.190.10 301 446 8.2E-15 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 357 646 2.0E-4 T 11-10-2018 dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 489 671 2.4E-39 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 Gene3D G3DSA:1.10.287.950 378 706 3.8E-60 T 11-10-2018 dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 73 178 8.7E-16 T 11-10-2018 IPR029095 NarX-like, N-terminal dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 542 569 1.6E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 465 494 1.6E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 619 648 1.6E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 571 600 1.6E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 SUPERFAMILY SSF58104 405 706 1.83E-62 T 11-10-2018 dqs_3599 7893dc7500c6f82537c3dcc91bdca4a2 706 SMART SM00283 444 705 1.1E-76 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3269 349c9348c64b4464c66dd7183e2948b6 372 Pfam PF01594 AI-2E family transporter 16 341 1.0E-60 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like dqs_3687 e73e2b7ab2c8913a56b9dac3490dff1b 431 Gene3D G3DSA:3.40.1080.20 290 430 2.5E-61 T 11-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily dqs_3687 e73e2b7ab2c8913a56b9dac3490dff1b 431 SUPERFAMILY SSF100950 190 427 2.81E-66 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_3687 e73e2b7ab2c8913a56b9dac3490dff1b 431 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 6 182 1.0E-14 T 11-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 dqs_3687 e73e2b7ab2c8913a56b9dac3490dff1b 431 SUPERFAMILY SSF100950 5 223 4.19E-46 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_3687 e73e2b7ab2c8913a56b9dac3490dff1b 431 Gene3D G3DSA:3.40.1080.10 2 184 3.3E-55 T 11-10-2018 dqs_3687 e73e2b7ab2c8913a56b9dac3490dff1b 431 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 272 425 1.3E-63 T 11-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain dqs_3687 e73e2b7ab2c8913a56b9dac3490dff1b 431 Gene3D G3DSA:3.30.750.70 185 289 7.0E-41 T 11-10-2018 dqs_1353 28d5edc40eac13db2e76ad97ddef1369 441 Pfam PF04820 Tryptophan halogenase 64 344 2.2E-8 T 11-10-2018 IPR006905 Flavin-dependent halogenase dqs_1353 28d5edc40eac13db2e76ad97ddef1369 441 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 257 272 7.7E-5 T 11-10-2018 dqs_1353 28d5edc40eac13db2e76ad97ddef1369 441 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 272 288 7.7E-5 T 11-10-2018 dqs_1353 28d5edc40eac13db2e76ad97ddef1369 441 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 7.7E-5 T 11-10-2018 dqs_1353 28d5edc40eac13db2e76ad97ddef1369 441 Gene3D G3DSA:3.50.50.60 1 364 4.8E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1353 28d5edc40eac13db2e76ad97ddef1369 441 SUPERFAMILY SSF51905 5 323 8.82E-27 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2075 0165099bd1f702aa7c619ca398283ceb 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 283 294 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 dqs_2075 0165099bd1f702aa7c619ca398283ceb 485 Gene3D G3DSA:3.40.605.10 25 473 1.2E-187 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_2075 0165099bd1f702aa7c619ca398283ceb 485 SUPERFAMILY SSF53720 9 482 1.83E-177 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_2075 0165099bd1f702aa7c619ca398283ceb 485 Pfam PF00171 Aldehyde dehydrogenase family 19 478 3.0E-174 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_2075 0165099bd1f702aa7c619ca398283ceb 485 Gene3D G3DSA:3.40.309.10 259 448 1.2E-187 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_2075 0165099bd1f702aa7c619ca398283ceb 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_2075 0165099bd1f702aa7c619ca398283ceb 485 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 477 2.4E-220 T 11-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 dqs_3547 79f464c124348476e4750cf300bfd67a 89 SUPERFAMILY SSF50249 9 86 4.71E-31 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_3547 79f464c124348476e4750cf300bfd67a 89 Gene3D G3DSA:2.40.50.140 5 88 7.7E-34 T 11-10-2018 dqs_3547 79f464c124348476e4750cf300bfd67a 89 PRINTS PR00973 Ribosomal protein S17 family signature 70 77 1.4E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3547 79f464c124348476e4750cf300bfd67a 89 PRINTS PR00973 Ribosomal protein S17 family signature 28 51 1.4E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3547 79f464c124348476e4750cf300bfd67a 89 PRINTS PR00973 Ribosomal protein S17 family signature 60 70 1.4E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3547 79f464c124348476e4750cf300bfd67a 89 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 9 79 1.0E-31 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3547 79f464c124348476e4750cf300bfd67a 89 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 9 79 1.7E-34 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3547 79f464c124348476e4750cf300bfd67a 89 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 9 84 23.725 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3547 79f464c124348476e4750cf300bfd67a 89 ProSitePatterns PS00056 Ribosomal protein S17 signature. 60 72 - T 11-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3547 79f464c124348476e4750cf300bfd67a 89 Pfam PF00366 Ribosomal protein S17 14 80 2.6E-31 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1673 b72773ce4c77aca7d2509462338b470d 114 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 3 102 2.7E-14 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1673 b72773ce4c77aca7d2509462338b470d 114 Gene3D G3DSA:1.20.1300.10 1 114 9.2E-33 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1673 b72773ce4c77aca7d2509462338b470d 114 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 8 112 6.4E-38 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 dqs_1673 b72773ce4c77aca7d2509462338b470d 114 PIRSF PIRSF000169 1 114 1.0E-37 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 dqs_1673 b72773ce4c77aca7d2509462338b470d 114 SUPERFAMILY SSF81343 3 114 2.83E-30 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1651 8384698235c3d5053879bd2d1cd3cc02 74 Pfam PF13275 S4 domain 6 67 1.5E-22 T 11-10-2018 dqs_1651 8384698235c3d5053879bd2d1cd3cc02 74 Gene3D G3DSA:3.10.290.10 1 70 5.5E-22 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_1651 8384698235c3d5053879bd2d1cd3cc02 74 SUPERFAMILY SSF55174 4 66 3.14E-17 T 11-10-2018 dqs_1750 24674a5f9a818c91fde607ad43407211 249 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 10 247 4.3E-100 T 11-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.5E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 4.5E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.5E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.5E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 4.5E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.5E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 246 2.1E-66 T 11-10-2018 dqs_1750 24674a5f9a818c91fde607ad43407211 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1750 24674a5f9a818c91fde607ad43407211 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 220 2.3E-4 T 11-10-2018 dqs_1750 24674a5f9a818c91fde607ad43407211 249 Gene3D G3DSA:3.40.50.720 1 248 9.7E-84 T 11-10-2018 dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 7.8E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 7.8E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 7.8E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1750 24674a5f9a818c91fde607ad43407211 249 SUPERFAMILY SSF51735 6 248 1.53E-85 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0347 e7cbf9a25c1223140b40ca98c7a8b101 192 Gene3D G3DSA:1.20.1260.10 38 186 2.9E-7 T 11-10-2018 IPR012347 Ferritin-like dqs_0347 e7cbf9a25c1223140b40ca98c7a8b101 192 Pfam PF13628 Domain of unknown function (DUF4142) 49 185 1.3E-42 T 11-10-2018 IPR025419 Domain of unknown function DUF4142 dqs_0860 ab532bb2214b2503e612e4ee7236caee 258 Gene3D G3DSA:3.90.226.10 2 200 4.9E-77 T 11-10-2018 dqs_0860 ab532bb2214b2503e612e4ee7236caee 258 SUPERFAMILY SSF52096 1 257 3.61E-90 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0860 ab532bb2214b2503e612e4ee7236caee 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 3.7E-83 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_0860 ab532bb2214b2503e612e4ee7236caee 258 Gene3D G3DSA:1.10.12.10 201 257 4.1E-25 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_0860 ab532bb2214b2503e612e4ee7236caee 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 dqs_2072 0fc68798111aa042219a19ac1a1c69a1 678 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 18 672 1.5E-216 T 11-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ dqs_2072 0fc68798111aa042219a19ac1a1c69a1 678 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 114 378 4.1E-59 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit dqs_2072 0fc68798111aa042219a19ac1a1c69a1 678 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 390 594 1.3E-26 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 SUPERFAMILY SSF46689 366 449 1.61E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 240 255 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 178 191 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 Pfam PF00072 Response regulator receiver domain 15 124 7.7E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 367 376 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 SUPERFAMILY SSF52540 154 384 1.16E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 415 432 1.6E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 451 1.6E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 Pfam PF02954 Bacterial regulatory protein, Fis family 409 446 1.3E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 Gene3D G3DSA:3.40.50.300 144 324 1.4E-65 T 11-10-2018 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 Gene3D G3DSA:1.10.8.60 325 389 3.8E-19 T 11-10-2018 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 Gene3D G3DSA:1.10.10.60 394 448 7.6E-16 T 11-10-2018 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 SMART SM00448 13 124 9.7E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 Pfam PF00158 Sigma-54 interaction domain 154 320 8.1E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 SUPERFAMILY SSF52172 13 199 1.18E-39 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 Gene3D G3DSA:3.40.50.2300 10 143 9.5E-34 T 11-10-2018 dqs_0081 6d06cc362cc1e8369f8c0238c94a8231 451 SMART SM00382 174 317 2.3E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3970 7c3202eee1f837c078757fe1bc1fe89e 386 Pfam PF13458 Periplasmic binding protein 31 376 1.2E-75 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_3970 7c3202eee1f837c078757fe1bc1fe89e 386 Gene3D G3DSA:3.40.50.2300 150 279 5.5E-80 T 11-10-2018 dqs_3970 7c3202eee1f837c078757fe1bc1fe89e 386 Gene3D G3DSA:3.40.50.2300 39 362 5.5E-80 T 11-10-2018 dqs_3970 7c3202eee1f837c078757fe1bc1fe89e 386 SUPERFAMILY SSF53822 30 382 1.92E-83 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_3970 7c3202eee1f837c078757fe1bc1fe89e 386 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 72 90 2.5E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_3970 7c3202eee1f837c078757fe1bc1fe89e 386 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 2.5E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_3970 7c3202eee1f837c078757fe1bc1fe89e 386 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 260 278 2.5E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_3970 7c3202eee1f837c078757fe1bc1fe89e 386 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 2.5E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1624 c31371ca9c3f98f021cad35de7c1f828 163 SMART SM00671 65 100 0.029 T 11-10-2018 IPR006597 Sel1-like repeat dqs_1624 c31371ca9c3f98f021cad35de7c1f828 163 SMART SM00671 105 140 1.1E-5 T 11-10-2018 IPR006597 Sel1-like repeat dqs_1624 c31371ca9c3f98f021cad35de7c1f828 163 SUPERFAMILY SSF81901 35 144 4.19E-17 T 11-10-2018 dqs_1624 c31371ca9c3f98f021cad35de7c1f828 163 Gene3D G3DSA:1.25.40.10 29 161 2.1E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1624 c31371ca9c3f98f021cad35de7c1f828 163 Pfam PF08238 Sel1 repeat 106 139 6.7E-8 T 11-10-2018 IPR006597 Sel1-like repeat dqs_1624 c31371ca9c3f98f021cad35de7c1f828 163 Pfam PF08238 Sel1 repeat 66 97 2.4E-4 T 11-10-2018 IPR006597 Sel1-like repeat dqs_0153 7408a93fe63f1596e07a82625708c7fa 97 SUPERFAMILY SSF81301 12 97 2.56E-18 T 11-10-2018 dqs_0153 7408a93fe63f1596e07a82625708c7fa 97 Pfam PF01909 Nucleotidyltransferase domain 29 95 9.4E-12 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 dqs_0153 7408a93fe63f1596e07a82625708c7fa 97 Gene3D G3DSA:3.30.460.10 4 96 5.1E-22 T 11-10-2018 dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 3.8E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 3.8E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 Gene3D G3DSA:3.40.50.12740 2 208 2.4E-55 T 11-10-2018 dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 3.7E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 Pfam PF00072 Response regulator receiver domain 5 116 5.8E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 SUPERFAMILY SSF52172 1 130 9.25E-34 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 SMART SM00448 2 115 1.4E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 SUPERFAMILY SSF46894 137 208 2.38E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_1626 38dd133fb9aad3c70abc1b9f66afc0df 211 SMART SM00421 146 203 1.8E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3783 05221076dc302e7ca1a2543a92391bf9 469 Pfam PF01575 MaoC like domain 27 119 1.3E-18 T 11-10-2018 IPR002539 MaoC-like dehydratase domain dqs_3783 05221076dc302e7ca1a2543a92391bf9 469 Gene3D G3DSA:3.10.129.10 7 162 2.2E-39 T 11-10-2018 dqs_3783 05221076dc302e7ca1a2543a92391bf9 469 SUPERFAMILY SSF54637 10 148 4.34E-34 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_3783 05221076dc302e7ca1a2543a92391bf9 469 SUPERFAMILY SSF53659 175 463 5.76E-68 T 11-10-2018 dqs_3783 05221076dc302e7ca1a2543a92391bf9 469 Gene3D G3DSA:3.40.718.10 169 463 1.4E-95 T 11-10-2018 dqs_3783 05221076dc302e7ca1a2543a92391bf9 469 Pfam PF01515 Phosphate acetyl/butaryl transferase 245 457 3.3E-43 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 dqs_3845 e30ec99a76821eeebbce66ee82059a59 126 PIRSF PIRSF000077 1 104 1.4E-25 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 dqs_3845 e30ec99a76821eeebbce66ee82059a59 126 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_3845 e30ec99a76821eeebbce66ee82059a59 126 Gene3D G3DSA:3.40.30.10 3 111 1.8E-28 T 11-10-2018 dqs_3845 e30ec99a76821eeebbce66ee82059a59 126 SUPERFAMILY SSF52833 3 102 8.47E-33 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3845 e30ec99a76821eeebbce66ee82059a59 126 Pfam PF00085 Thioredoxin 4 101 8.3E-24 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 dqs_3845 e30ec99a76821eeebbce66ee82059a59 126 PRINTS PR00421 Thioredoxin family signature 21 29 1.1E-5 T 11-10-2018 dqs_3845 e30ec99a76821eeebbce66ee82059a59 126 PRINTS PR00421 Thioredoxin family signature 29 38 1.1E-5 T 11-10-2018 dqs_3845 e30ec99a76821eeebbce66ee82059a59 126 PRINTS PR00421 Thioredoxin family signature 68 79 1.1E-5 T 11-10-2018 dqs_1416 e4604c8393f5af138589f25524e00f3f 481 PIRSF PIRSF004919 20 481 7.6E-140 T 11-10-2018 IPR025502 TldD dqs_1416 e4604c8393f5af138589f25524e00f3f 481 Gene3D G3DSA:3.30.2290.10 17 240 6.5E-18 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal dqs_1416 e4604c8393f5af138589f25524e00f3f 481 Pfam PF01523 Putative modulator of DNA gyrase 40 332 1.3E-65 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 dqs_1416 e4604c8393f5af138589f25524e00f3f 481 SUPERFAMILY SSF111283 25 480 3.14E-133 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 dqs_2423 385bc41f3c4cce731f9ece1b7d93dffb 265 SUPERFAMILY SSF56235 2 249 1.1E-42 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_2423 385bc41f3c4cce731f9ece1b7d93dffb 265 Pfam PF13230 Glutamine amidotransferases class-II 1 253 2.1E-95 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 dqs_2423 385bc41f3c4cce731f9ece1b7d93dffb 265 Gene3D G3DSA:3.60.20.10 1 255 6.6E-87 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_1361 08480d6b80d547edb145d393b47687c3 388 SMART SM00922 162 259 8.5E-15 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal dqs_1361 08480d6b80d547edb145d393b47687c3 388 SUPERFAMILY SSF51604 123 384 2.12E-52 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily dqs_1361 08480d6b80d547edb145d393b47687c3 388 Gene3D G3DSA:3.30.390.10 1 127 6.4E-68 T 11-10-2018 IPR029017 Enolase-like, N-terminal dqs_1361 08480d6b80d547edb145d393b47687c3 388 Pfam PF13378 Enolase C-terminal domain-like 166 376 4.2E-36 T 11-10-2018 IPR029065 Enolase C-terminal domain-like dqs_1361 08480d6b80d547edb145d393b47687c3 388 Gene3D G3DSA:3.20.20.120 128 388 1.7E-66 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily dqs_1361 08480d6b80d547edb145d393b47687c3 388 SUPERFAMILY SSF54826 1 138 1.21E-29 T 11-10-2018 dqs_1361 08480d6b80d547edb145d393b47687c3 388 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 86 134 1.5E-4 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain dqs_3638 140877aa57c17750dd96174bfac5ff2f 292 Gene3D G3DSA:3.40.50.720 1 290 4.8E-74 T 11-10-2018 dqs_3638 140877aa57c17750dd96174bfac5ff2f 292 SUPERFAMILY SSF51735 2 286 2.07E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3638 140877aa57c17750dd96174bfac5ff2f 292 Pfam PF01370 NAD dependent epimerase/dehydratase family 21 211 1.0E-6 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 296 458 2.4E-52 T 11-10-2018 IPR000160 GGDEF domain dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 SUPERFAMILY SSF141868 480 718 3.53E-71 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 Pfam PF00990 Diguanylate cyclase, GGDEF domain 301 457 3.3E-46 T 11-10-2018 IPR000160 GGDEF domain dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 SMART SM00267 289 462 7.8E-59 T 11-10-2018 IPR000160 GGDEF domain dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 Gene3D G3DSA:3.20.20.450 474 721 5.0E-79 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 Gene3D G3DSA:3.30.70.270 286 462 3.4E-56 T 11-10-2018 dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 SMART SM00052 474 720 1.1E-61 T 11-10-2018 IPR001633 EAL domain dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 SUPERFAMILY SSF55073 305 460 1.33E-47 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3670 2a232269d33b38aea5b5770b00343a5c 723 Pfam PF00563 EAL domain 480 715 2.6E-67 T 11-10-2018 IPR001633 EAL domain dqs_2807 313c901a49df51bc73df7e4cd423e7f1 180 SMART SM00271 124 180 2.1E-6 T 11-10-2018 IPR001623 DnaJ domain dqs_2807 313c901a49df51bc73df7e4cd423e7f1 180 Gene3D G3DSA:1.10.287.110 118 180 6.9E-11 T 11-10-2018 IPR036869 Chaperone J-domain superfamily dqs_2807 313c901a49df51bc73df7e4cd423e7f1 180 SUPERFAMILY SSF46565 122 178 7.07E-12 T 11-10-2018 IPR036869 Chaperone J-domain superfamily dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 SMART SM00267 399 571 4.0E-71 T 11-10-2018 IPR000160 GGDEF domain dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 SMART SM00304 345 397 0.0011 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 Pfam PF02743 Cache domain 41 246 4.1E-13 T 11-10-2018 IPR033479 Double Cache domain 1 dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 Gene3D G3DSA:1.20.1480.50 310 403 2.2E-10 T 11-10-2018 dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 SUPERFAMILY SSF158472 345 395 8.76E-7 T 11-10-2018 dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 SUPERFAMILY SSF55073 415 572 6.02E-55 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 Pfam PF00672 HAMP domain 345 393 1.6E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 406 569 5.2E-49 T 11-10-2018 IPR000160 GGDEF domain dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 Pfam PF00990 Diguanylate cyclase, GGDEF domain 410 566 3.4E-52 T 11-10-2018 IPR000160 GGDEF domain dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 Gene3D G3DSA:3.30.70.270 404 573 5.3E-62 T 11-10-2018 dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 SUPERFAMILY SSF103190 40 216 5.02E-36 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_1369 947bd41b8b558de5a8dfdb226cedf9b4 578 Gene3D G3DSA:3.30.450.20 85 216 2.0E-23 T 11-10-2018 dqs_0689 f7406f4a505fd9bff17986c578db62dc 126 SUPERFAMILY SSF53850 6 122 2.24E-9 T 11-10-2018 dqs_0689 f7406f4a505fd9bff17986c578db62dc 126 Gene3D G3DSA:3.40.190.10 9 124 6.5E-7 T 11-10-2018 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 Gene3D G3DSA:3.30.420.40 183 354 2.2E-114 T 11-10-2018 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 Gene3D G3DSA:1.20.1270.10 514 609 9.4E-30 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 SUPERFAMILY SSF53067 9 185 4.32E-53 T 11-10-2018 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 PRINTS PR00301 70kDa heat shock protein signature 200 210 8.9E-56 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 PRINTS PR00301 70kDa heat shock protein signature 460 476 8.9E-56 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 PRINTS PR00301 70kDa heat shock protein signature 141 161 8.9E-56 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 PRINTS PR00301 70kDa heat shock protein signature 353 373 8.9E-56 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 PRINTS PR00301 70kDa heat shock protein signature 38 50 8.9E-56 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 PRINTS PR00301 70kDa heat shock protein signature 10 23 8.9E-56 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 PRINTS PR00301 70kDa heat shock protein signature 322 338 8.9E-56 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 PRINTS PR00301 70kDa heat shock protein signature 379 398 8.9E-56 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 Gene3D G3DSA:3.30.420.40 12 367 2.2E-114 T 11-10-2018 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 11 609 1.1E-274 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 Gene3D G3DSA:2.60.34.10 373 513 6.6E-46 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 610 41.747 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 SUPERFAMILY SSF53067 189 370 1.08E-48 T 11-10-2018 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 325 339 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 SUPERFAMILY SSF100934 498 609 1.31E-36 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 Pfam PF00012 Hsp70 protein 11 593 3.8E-178 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 SUPERFAMILY SSF100920 377 530 4.58E-47 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 14 21 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 194 207 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 dqs_2167 15f5a213a073e7a9e31737a67f7628ba 612 Gene3D G3DSA:3.90.640.10 227 304 2.2E-114 T 11-10-2018 dqs_3346 6a1712bf9ac88dc5222d1f9a0ac94c29 324 SMART SM00829 11 322 6.2E-43 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 dqs_3346 6a1712bf9ac88dc5222d1f9a0ac94c29 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 86 6.3E-9 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 dqs_3346 6a1712bf9ac88dc5222d1f9a0ac94c29 324 Gene3D G3DSA:3.40.50.720 123 268 2.1E-124 T 11-10-2018 dqs_3346 6a1712bf9ac88dc5222d1f9a0ac94c29 324 Gene3D G3DSA:3.90.180.10 12 318 2.1E-124 T 11-10-2018 dqs_3346 6a1712bf9ac88dc5222d1f9a0ac94c29 324 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 11-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 dqs_3346 6a1712bf9ac88dc5222d1f9a0ac94c29 324 SUPERFAMILY SSF50129 3 144 7.15E-39 T 11-10-2018 IPR011032 GroES-like superfamily dqs_3346 6a1712bf9ac88dc5222d1f9a0ac94c29 324 Pfam PF00107 Zinc-binding dehydrogenase 151 253 2.4E-28 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 dqs_3346 6a1712bf9ac88dc5222d1f9a0ac94c29 324 SUPERFAMILY SSF51735 112 265 3.54E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3902 8dddb6a2080d07ea16b6081f0e295b6c 320 Gene3D G3DSA:3.40.50.880 7 218 1.3E-49 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3902 8dddb6a2080d07ea16b6081f0e295b6c 320 SUPERFAMILY SSF52317 9 199 9.97E-37 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3902 8dddb6a2080d07ea16b6081f0e295b6c 320 Gene3D G3DSA:1.10.10.60 219 318 5.7E-19 T 11-10-2018 dqs_3902 8dddb6a2080d07ea16b6081f0e295b6c 320 Pfam PF12833 Helix-turn-helix domain 240 311 9.7E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3902 8dddb6a2080d07ea16b6081f0e295b6c 320 SUPERFAMILY SSF46689 217 268 4.18E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3902 8dddb6a2080d07ea16b6081f0e295b6c 320 SMART SM00342 234 316 1.0E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3902 8dddb6a2080d07ea16b6081f0e295b6c 320 Pfam PF01965 DJ-1/PfpI family 11 178 5.9E-16 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 dqs_2100 9ba1317f5b1188e039c351c9cf23bf38 338 SUPERFAMILY SSF46689 234 284 5.86E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2100 9ba1317f5b1188e039c351c9cf23bf38 338 SUPERFAMILY SSF46689 287 334 9.22E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2100 9ba1317f5b1188e039c351c9cf23bf38 338 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 287 332 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_2100 9ba1317f5b1188e039c351c9cf23bf38 338 Pfam PF12833 Helix-turn-helix domain 256 337 1.8E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2100 9ba1317f5b1188e039c351c9cf23bf38 338 Gene3D G3DSA:1.10.10.60 234 338 1.5E-36 T 11-10-2018 dqs_2100 9ba1317f5b1188e039c351c9cf23bf38 338 Pfam PF14525 AraC-binding-like domain 30 213 4.2E-44 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like dqs_2100 9ba1317f5b1188e039c351c9cf23bf38 338 SMART SM00342 250 336 1.1E-29 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 SMART SM00487 257 457 2.2E-10 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 27 688 1.9E-147 T 11-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 SUPERFAMILY SSF52540 230 458 3.88E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 28 204 3.0E-30 T 11-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 Pfam PF11867 Domain of unknown function (DUF3387) 746 935 4.0E-8 T 11-10-2018 IPR021810 Protein of unknown function DUF3387 dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 Gene3D G3DSA:3.40.50.300 442 691 6.6E-41 T 11-10-2018 dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 Pfam PF04851 Type III restriction enzyme, res subunit 259 420 5.3E-16 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 Gene3D G3DSA:3.40.50.300 260 440 5.2E-48 T 11-10-2018 dqs_0006 0d7afebe89262b6a7727cc455f7ce747 1036 Gene3D G3DSA:3.90.1570.50 100 259 4.8E-20 T 11-10-2018 dqs_0067 53f0f5ef7530c226fb385b03f3d16303 269 Pfam PF17131 Outer membrane lipoprotein-sorting protein 88 265 2.1E-29 T 11-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein dqs_0067 53f0f5ef7530c226fb385b03f3d16303 269 PIRSF PIRSF028205 12 267 4.7E-46 T 11-10-2018 IPR011220 Uncharacterised conserved protein UCP028205 dqs_0067 53f0f5ef7530c226fb385b03f3d16303 269 Gene3D G3DSA:2.50.20.10 32 266 6.8E-41 T 11-10-2018 dqs_0883 b55afec09fa719e4e9c69f04bc60363f 266 Pfam PF01061 ABC-2 type transporter 19 229 2.0E-35 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 dqs_0883 b55afec09fa719e4e9c69f04bc60363f 266 PIRSF PIRSF006648 3 263 1.3E-21 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0883 b55afec09fa719e4e9c69f04bc60363f 266 PRINTS PR00164 ABC-2 type transport system membrane protein signature 206 225 1.5E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0883 b55afec09fa719e4e9c69f04bc60363f 266 PRINTS PR00164 ABC-2 type transport system membrane protein signature 186 205 1.5E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0883 b55afec09fa719e4e9c69f04bc60363f 266 PRINTS PR00164 ABC-2 type transport system membrane protein signature 68 90 1.5E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_2236 6b0bdbfcb449de4d017c3fe64db90fb8 89 Pfam PF00312 Ribosomal protein S15 8 88 1.1E-37 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2236 6b0bdbfcb449de4d017c3fe64db90fb8 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2236 6b0bdbfcb449de4d017c3fe64db90fb8 89 Gene3D G3DSA:1.10.287.10 2 89 3.3E-35 T 11-10-2018 dqs_2236 6b0bdbfcb449de4d017c3fe64db90fb8 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 1.0E-37 T 11-10-2018 dqs_2236 6b0bdbfcb449de4d017c3fe64db90fb8 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.593 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_2236 6b0bdbfcb449de4d017c3fe64db90fb8 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 5.8E-39 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_2236 6b0bdbfcb449de4d017c3fe64db90fb8 89 SUPERFAMILY SSF47060 3 89 2.94E-35 T 11-10-2018 IPR009068 S15/NS1, RNA-binding dqs_2236 6b0bdbfcb449de4d017c3fe64db90fb8 89 SMART SM01387 8 88 1.4E-53 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2328 59e3e61519a082262fffea196fc18299 402 Gene3D G3DSA:2.40.30.10 193 347 1.2E-119 T 11-10-2018 dqs_2328 59e3e61519a082262fffea196fc18299 402 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 8 399 1.3E-117 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like dqs_2328 59e3e61519a082262fffea196fc18299 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 7.9E-5 T 11-10-2018 dqs_2328 59e3e61519a082262fffea196fc18299 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 7.9E-5 T 11-10-2018 dqs_2328 59e3e61519a082262fffea196fc18299 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 157 175 7.9E-5 T 11-10-2018 dqs_2328 59e3e61519a082262fffea196fc18299 402 SUPERFAMILY SSF51905 4 401 1.73E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2328 59e3e61519a082262fffea196fc18299 402 Pfam PF03486 HI0933-like protein 6 399 5.8E-140 T 11-10-2018 dqs_2328 59e3e61519a082262fffea196fc18299 402 Gene3D G3DSA:1.10.8.260 273 330 1.2E-119 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily dqs_2328 59e3e61519a082262fffea196fc18299 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.6E-7 T 11-10-2018 dqs_2328 59e3e61519a082262fffea196fc18299 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 160 169 5.6E-7 T 11-10-2018 dqs_2328 59e3e61519a082262fffea196fc18299 402 SUPERFAMILY SSF160996 194 348 9.94E-36 T 11-10-2018 dqs_2328 59e3e61519a082262fffea196fc18299 402 Gene3D G3DSA:3.50.50.60 8 399 1.2E-119 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2214 b3de2fbc3f1f80cfe594b0b3a574640e 482 Pfam PF01050 Mannose-6-phosphate isomerase 325 475 3.8E-72 T 11-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 dqs_2214 b3de2fbc3f1f80cfe594b0b3a574640e 482 Pfam PF00483 Nucleotidyl transferase 4 296 1.4E-60 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 dqs_2214 b3de2fbc3f1f80cfe594b0b3a574640e 482 SUPERFAMILY SSF53448 1 291 5.18E-65 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2214 b3de2fbc3f1f80cfe594b0b3a574640e 482 SUPERFAMILY SSF51182 189 479 1.53E-84 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2214 b3de2fbc3f1f80cfe594b0b3a574640e 482 Gene3D G3DSA:3.90.550.10 3 359 7.6E-114 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2214 b3de2fbc3f1f80cfe594b0b3a574640e 482 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 3 479 9.3E-205 T 11-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 dqs_2214 b3de2fbc3f1f80cfe594b0b3a574640e 482 Gene3D G3DSA:2.60.120.10 360 468 5.2E-18 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_2728 ac24c2942c5ca099738a160fd392e8cf 335 Gene3D G3DSA:1.10.10.10 3 90 3.1E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2728 ac24c2942c5ca099738a160fd392e8cf 335 Pfam PF03466 LysR substrate binding domain 88 294 2.6E-45 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2728 ac24c2942c5ca099738a160fd392e8cf 335 SUPERFAMILY SSF46785 4 87 1.14E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2728 ac24c2942c5ca099738a160fd392e8cf 335 Gene3D G3DSA:3.40.190.290 91 294 4.3E-70 T 11-10-2018 dqs_2728 ac24c2942c5ca099738a160fd392e8cf 335 SUPERFAMILY SSF53850 88 297 5.25E-51 T 11-10-2018 dqs_2728 ac24c2942c5ca099738a160fd392e8cf 335 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 6.6E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3725 55930c1c7840b2424ccd8c0c21ae20e2 345 Pfam PF00953 Glycosyl transferase family 4 78 229 2.3E-30 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 dqs_2422 d02baa2b362d872d9ba1d707b70744da 239 Pfam PF02308 MgtC family 21 152 5.4E-37 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_2422 d02baa2b362d872d9ba1d707b70744da 239 PRINTS PR01837 MgtC/SapB protein signature 24 43 4.9E-40 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_2422 d02baa2b362d872d9ba1d707b70744da 239 PRINTS PR01837 MgtC/SapB protein signature 79 101 4.9E-40 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_2422 d02baa2b362d872d9ba1d707b70744da 239 PRINTS PR01837 MgtC/SapB protein signature 106 130 4.9E-40 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_2422 d02baa2b362d872d9ba1d707b70744da 239 PRINTS PR01837 MgtC/SapB protein signature 43 61 4.9E-40 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_1110 896244c84ebd3840e1e5f2eeea0239a3 364 Pfam PF01728 FtsJ-like methyltransferase 196 291 2.6E-8 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 dqs_1110 896244c84ebd3840e1e5f2eeea0239a3 364 Gene3D G3DSA:3.40.50.150 186 363 2.3E-55 T 11-10-2018 dqs_1110 896244c84ebd3840e1e5f2eeea0239a3 364 Gene3D G3DSA:3.30.70.2810 12 89 2.9E-20 T 11-10-2018 dqs_1110 896244c84ebd3840e1e5f2eeea0239a3 364 SUPERFAMILY SSF53335 195 295 1.1E-16 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1110 896244c84ebd3840e1e5f2eeea0239a3 364 Gene3D G3DSA:3.30.2300.20 91 185 7.6E-23 T 11-10-2018 dqs_1110 896244c84ebd3840e1e5f2eeea0239a3 364 PIRSF PIRSF028774 12 364 1.5E-124 T 11-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 dqs_1110 896244c84ebd3840e1e5f2eeea0239a3 364 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 12 363 77.292 T 11-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 dqs_1508 e91376712c3fb20ae45990d74db86104 153 Gene3D G3DSA:3.30.110.60 2 104 1.2E-29 T 11-10-2018 IPR035920 YhbY-like superfamily dqs_1508 e91376712c3fb20ae45990d74db86104 153 Pfam PF01985 CRS1 / YhbY (CRM) domain 4 87 4.9E-19 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 dqs_1508 e91376712c3fb20ae45990d74db86104 153 SMART SM01103 4 87 1.6E-38 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 dqs_1508 e91376712c3fb20ae45990d74db86104 153 SUPERFAMILY SSF75471 3 93 1.44E-26 T 11-10-2018 IPR035920 YhbY-like superfamily dqs_1508 e91376712c3fb20ae45990d74db86104 153 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 10 86 5.0E-26 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 dqs_3889 6127aba26cd07544d1362c0c81157829 246 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 22 242 1.3E-54 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 dqs_3889 6127aba26cd07544d1362c0c81157829 246 SUPERFAMILY SSF56935 53 233 8.55E-7 T 11-10-2018 dqs_3889 6127aba26cd07544d1362c0c81157829 246 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 4 246 1.5E-58 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 dqs_3501 2618e971d89ae37376c4925f3b810c47 296 SUPERFAMILY SSF48179 166 292 2.04E-32 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3501 2618e971d89ae37376c4925f3b810c47 296 Gene3D G3DSA:3.40.50.720 1 165 4.0E-50 T 11-10-2018 dqs_3501 2618e971d89ae37376c4925f3b810c47 296 Gene3D G3DSA:1.10.1040.10 166 294 1.1E-32 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_3501 2618e971d89ae37376c4925f3b810c47 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 288 2.6E-27 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 dqs_3501 2618e971d89ae37376c4925f3b810c47 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 165 4.0E-46 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 dqs_3501 2618e971d89ae37376c4925f3b810c47 296 PIRSF PIRSF000103 1 295 2.7E-67 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 dqs_3501 2618e971d89ae37376c4925f3b810c47 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 dqs_3501 2618e971d89ae37376c4925f3b810c47 296 SUPERFAMILY SSF51735 1 166 1.02E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3412 dbf7f6fc731776e5ef67d2f5cd32b58f 644 SUPERFAMILY SSF52402 234 621 1.17E-86 T 11-10-2018 dqs_3412 dbf7f6fc731776e5ef67d2f5cd32b58f 644 TIGRFAM TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1 1 627 0.0 T 11-10-2018 IPR017539 Exosortase 1 system-associated amidotransferase 1 dqs_3412 dbf7f6fc731776e5ef67d2f5cd32b58f 644 PIRSF PIRSF001589 1 634 1.0E-175 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 dqs_3412 dbf7f6fc731776e5ef67d2f5cd32b58f 644 SUPERFAMILY SSF56235 1 226 1.89E-65 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3412 dbf7f6fc731776e5ef67d2f5cd32b58f 644 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 561 4.4E-147 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 dqs_3412 dbf7f6fc731776e5ef67d2f5cd32b58f 644 Pfam PF00733 Asparagine synthase 242 625 3.8E-100 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 dqs_3412 dbf7f6fc731776e5ef67d2f5cd32b58f 644 Gene3D G3DSA:3.60.20.10 2 187 1.3E-66 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3412 dbf7f6fc731776e5ef67d2f5cd32b58f 644 Pfam PF13537 Glutamine amidotransferase domain 48 167 4.6E-48 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 Pfam PF01726 LexA DNA binding domain 6 69 1.6E-23 T 11-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 SUPERFAMILY SSF51306 77 199 7.85E-35 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 Hamap MF_00015 LexA repressor [lexA]. 7 201 31.195 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 Pfam PF00717 Peptidase S24-like 116 182 4.7E-14 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 Gene3D G3DSA:1.10.10.10 6 74 7.6E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 TIGRFAM TIGR00498 lexA: repressor LexA 6 200 3.4E-68 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 Gene3D G3DSA:2.10.109.10 82 202 2.1E-41 T 11-10-2018 dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 152 164 1.6E-11 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 124 135 1.6E-11 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 113 123 1.6E-11 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 dqs_2190 2dc56b4faa46b90a78e513e533f7ee5c 202 SUPERFAMILY SSF46785 7 73 1.32E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.1E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.1E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.1E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.1E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.1E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 SUPERFAMILY SSF51735 10 252 7.5E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 Pfam PF00106 short chain dehydrogenase 11 194 4.9E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.1E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.1E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.1E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 Gene3D G3DSA:3.40.50.720 8 283 9.5E-76 T 11-10-2018 dqs_0021 19fe0ee9e68b77cdbd2cbe22957c6680 284 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 190 0.0026 T 11-10-2018 dqs_3806 e1b11a117d8b252d13089991448a6285 690 Gene3D G3DSA:2.40.40.20 545 688 3.6E-34 T 11-10-2018 dqs_3806 e1b11a117d8b252d13089991448a6285 690 SUPERFAMILY SSF50692 526 685 1.6E-35 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_3806 e1b11a117d8b252d13089991448a6285 690 SUPERFAMILY SSF53706 6 573 5.37E-161 T 11-10-2018 dqs_3806 e1b11a117d8b252d13089991448a6285 690 Gene3D G3DSA:3.40.50.740 73 476 5.3E-144 T 11-10-2018 dqs_3806 e1b11a117d8b252d13089991448a6285 690 Gene3D G3DSA:3.30.2070.10 431 516 5.3E-144 T 11-10-2018 dqs_3806 e1b11a117d8b252d13089991448a6285 690 SMART SM00926 4 59 3.0E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3806 e1b11a117d8b252d13089991448a6285 690 Gene3D G3DSA:2.20.25.90 2 64 2.6E-9 T 11-10-2018 dqs_3806 e1b11a117d8b252d13089991448a6285 690 Pfam PF00384 Molybdopterin oxidoreductase 62 471 2.1E-52 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3806 e1b11a117d8b252d13089991448a6285 690 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 416 433 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 dqs_3806 e1b11a117d8b252d13089991448a6285 690 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 6 59 3.5E-10 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3806 e1b11a117d8b252d13089991448a6285 690 Gene3D G3DSA:3.40.228.10 139 540 5.3E-144 T 11-10-2018 dqs_3806 e1b11a117d8b252d13089991448a6285 690 Pfam PF01568 Molydopterin dinucleotide binding domain 572 681 9.2E-27 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_1203 0add18410b3abaa8ec0290351112e7cb 327 Pfam PF01882 Protein of unknown function DUF58 216 284 3.0E-10 T 11-10-2018 IPR002881 Domain of unknown function DUF58 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Pfam PF12838 4Fe-4S dicluster domain 539 608 2.8E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 SUPERFAMILY SSF56176 2 261 2.74E-56 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Gene3D G3DSA:1.10.45.10 480 513 2.0E-5 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 540 551 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Pfam PF02913 FAD linked oxidases, C-terminal domain 263 511 9.3E-56 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 SUPERFAMILY SSF55103 266 517 2.94E-54 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Pfam PF02754 Cysteine-rich domain 694 785 0.011 T 11-10-2018 IPR004017 Cysteine-rich domain dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 594 605 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Gene3D G3DSA:3.30.70.2190 264 380 2.6E-7 T 11-10-2018 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Gene3D G3DSA:3.30.43.10 1 87 1.1E-11 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Pfam PF01565 FAD binding domain 38 174 5.8E-29 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Gene3D G3DSA:3.30.70.3270 522 621 2.5E-7 T 11-10-2018 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 SUPERFAMILY SSF46548 498 620 4.71E-22 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_1274 18c7a9db745e5e9e523f88ba8eebbd5c 925 Gene3D G3DSA:3.30.70.2740 389 472 1.6E-5 T 11-10-2018 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 Pfam PF12631 MnmE helical domain 127 449 2.1E-55 T 11-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 16 452 4.7E-104 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 SUPERFAMILY SSF116878 125 452 3.92E-48 T 11-10-2018 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 Gene3D G3DSA:3.30.1360.120 2 125 2.5E-42 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 220 350 1.7E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 Gene3D G3DSA:1.20.120.430 126 452 7.8E-101 T 11-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 10 452 33.234 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 SUPERFAMILY SSF52540 77 373 4.99E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 223 243 9.5E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 290 308 9.5E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 Pfam PF01926 50S ribosome-binding GTPase 222 336 2.0E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 Gene3D G3DSA:3.40.50.300 221 383 7.8E-101 T 11-10-2018 dqs_4131 15eae6b4180876472ea1d0aac6bfbc62 452 Pfam PF10396 GTP-binding protein TrmE N-terminus 12 124 2.2E-37 T 11-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 dqs_0742 b6da721fbb4941dc754e53b839cb9e24 52 TIGRFAM TIGR02973 nitrate_rd_NapE: periplasmic nitrate reductase, NapE protein 9 47 3.2E-20 T 11-10-2018 IPR004448 Nitrate reductas, NapE, periplasmic dqs_0742 b6da721fbb4941dc754e53b839cb9e24 52 Pfam PF06796 Periplasmic nitrate reductase protein NapE 2 48 1.8E-19 T 11-10-2018 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE dqs_3418 eaade1fbd98c6b89c3f88f03828543ac 357 SMART SM00382 42 212 1.0E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3418 eaade1fbd98c6b89c3f88f03828543ac 357 Pfam PF13401 AAA domain 42 171 2.9E-23 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3418 eaade1fbd98c6b89c3f88f03828543ac 357 TIGRFAM TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily 1 269 4.4E-130 T 11-10-2018 IPR017466 ATPase, secretion system, PEP-CTERM, predicted dqs_3418 eaade1fbd98c6b89c3f88f03828543ac 357 Gene3D G3DSA:3.40.50.300 29 185 1.6E-11 T 11-10-2018 dqs_3418 eaade1fbd98c6b89c3f88f03828543ac 357 SUPERFAMILY SSF52540 6 265 1.91E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0699 122fa759ff59d5aa98ee876384a3be0b 147 Pfam PF04773 FecR protein 57 144 1.2E-11 T 11-10-2018 IPR006860 FecR protein dqs_1351 793d9463fef55cb938eaff9aab26e753 579 SMART SM00382 382 553 2.9E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1351 793d9463fef55cb938eaff9aab26e753 579 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1351 793d9463fef55cb938eaff9aab26e753 579 SUPERFAMILY SSF52540 347 569 7.99E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1351 793d9463fef55cb938eaff9aab26e753 579 Pfam PF00005 ABC transporter 379 522 8.4E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1351 793d9463fef55cb938eaff9aab26e753 579 Gene3D G3DSA:1.20.1560.10 26 336 2.2E-67 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_1351 793d9463fef55cb938eaff9aab26e753 579 SUPERFAMILY SSF90123 28 334 1.96E-63 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_1351 793d9463fef55cb938eaff9aab26e753 579 Pfam PF00664 ABC transporter transmembrane region 44 311 1.0E-37 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_1351 793d9463fef55cb938eaff9aab26e753 579 Gene3D G3DSA:3.40.50.300 350 576 1.3E-70 T 11-10-2018 dqs_2549 b551b54fb92728d5698e79e5af0e8436 145 Gene3D G3DSA:3.30.300.20 49 144 1.3E-25 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_2549 b551b54fb92728d5698e79e5af0e8436 145 Gene3D G3DSA:2.20.25.10 1 47 2.4E-21 T 11-10-2018 dqs_2549 b551b54fb92728d5698e79e5af0e8436 145 SUPERFAMILY SSF82784 7 142 1.44E-35 T 11-10-2018 IPR036102 OsmC/Ohr superfamily dqs_2549 b551b54fb92728d5698e79e5af0e8436 145 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 142 1.4E-45 T 11-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 dqs_2549 b551b54fb92728d5698e79e5af0e8436 145 Pfam PF02566 OsmC-like protein 43 140 2.7E-16 T 11-10-2018 IPR003718 OsmC/Ohr family dqs_0799 37ad72c62e541e8c5dfe17a2ab7adf10 354 SUPERFAMILY SSF50685 7 351 1.53E-134 T 11-10-2018 IPR036908 RlpA-like domain superfamily dqs_0799 37ad72c62e541e8c5dfe17a2ab7adf10 354 PIRSF PIRSF019422 1 353 8.5E-139 T 11-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A dqs_0799 37ad72c62e541e8c5dfe17a2ab7adf10 354 Pfam PF06725 3D domain 271 344 6.0E-24 T 11-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 dqs_0799 37ad72c62e541e8c5dfe17a2ab7adf10 354 SMART SM00925 93 250 1.9E-90 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 dqs_0799 37ad72c62e541e8c5dfe17a2ab7adf10 354 Gene3D G3DSA:2.40.40.10 3 96 1.3E-23 T 11-10-2018 IPR036908 RlpA-like domain superfamily dqs_0799 37ad72c62e541e8c5dfe17a2ab7adf10 354 Pfam PF03562 MltA specific insert domain 18 250 8.3E-87 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 dqs_0799 37ad72c62e541e8c5dfe17a2ab7adf10 354 Gene3D G3DSA:2.40.40.10 254 354 6.1E-42 T 11-10-2018 IPR036908 RlpA-like domain superfamily dqs_0799 37ad72c62e541e8c5dfe17a2ab7adf10 354 Gene3D G3DSA:2.40.240.50 97 252 7.5E-61 T 11-10-2018 dqs_2256 89790ac0383552644fa6fedee3b5ce0a 328 SUPERFAMILY SSF56112 1 327 2.92E-85 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_2256 89790ac0383552644fa6fedee3b5ce0a 328 Gene3D G3DSA:3.30.200.70 10 105 4.9E-120 T 11-10-2018 dqs_2256 89790ac0383552644fa6fedee3b5ce0a 328 Gene3D G3DSA:1.20.1270.170 146 310 4.9E-120 T 11-10-2018 dqs_2256 89790ac0383552644fa6fedee3b5ce0a 328 Gene3D G3DSA:1.10.510.10 57 261 4.9E-120 T 11-10-2018 dqs_2256 89790ac0383552644fa6fedee3b5ce0a 328 Hamap MF_01497 Stress response kinase A [srkA]. 1 321 47.7 T 11-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 dqs_2256 89790ac0383552644fa6fedee3b5ce0a 328 Pfam PF01636 Phosphotransferase enzyme family 33 266 2.5E-38 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase dqs_1243 69357869530a61cbec7a41f19c4620cf 760 SMART SM01086 660 752 1.7E-33 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_1243 69357869530a61cbec7a41f19c4620cf 760 SUPERFAMILY SSF52540 444 747 4.3E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Gene3D G3DSA:3.40.50.300 446 658 1.9E-78 T 11-10-2018 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 SUPERFAMILY SSF52540 174 428 1.81E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1243 69357869530a61cbec7a41f19c4620cf 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 602 616 1.1E-37 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 540 558 1.1E-37 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 569 587 1.1E-37 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 498 516 1.1E-37 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Pfam PF07724 AAA domain (Cdc48 subfamily) 493 653 6.3E-47 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 4.2E-15 T 11-10-2018 IPR004176 Clp, N-terminal dqs_1243 69357869530a61cbec7a41f19c4620cf 760 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 309 321 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 SUPERFAMILY SSF81923 1 141 1.19E-60 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 525 543 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Gene3D G3DSA:1.10.8.60 358 445 2.0E-33 T 11-10-2018 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 741 0.0 T 11-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Gene3D G3DSA:1.10.8.60 660 759 4.0E-28 T 11-10-2018 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Gene3D G3DSA:3.40.50.300 163 357 7.7E-69 T 11-10-2018 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 SMART SM00382 213 358 5.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1243 69357869530a61cbec7a41f19c4620cf 760 SMART SM00382 494 643 3.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 218 349 1.6E-12 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 660 740 3.9E-22 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_1243 69357869530a61cbec7a41f19c4620cf 760 Gene3D G3DSA:1.10.1780.10 1 142 7.0E-43 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 Pfam PF00384 Molybdopterin oxidoreductase 98 570 7.9E-91 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 SMART SM00926 41 95 3.1E-12 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 Pfam PF01568 Molydopterin dinucleotide binding domain 716 824 1.8E-22 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 830 32.173 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 Gene3D G3DSA:2.40.40.20 706 830 9.3E-48 T 11-10-2018 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 46 64 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 SUPERFAMILY SSF53706 37 702 1.96E-197 T 11-10-2018 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 Gene3D G3DSA:3.40.50.740 98 625 0.0 T 11-10-2018 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 42 94 1.9E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 SUPERFAMILY SSF50692 689 830 1.54E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 830 0.0 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 Gene3D G3DSA:3.40.228.10 177 705 0.0 T 11-10-2018 dqs_0740 42de5fc00fdbd5ed4b100f89971c2edf 830 Gene3D G3DSA:3.30.200.210 42 668 0.0 T 11-10-2018 dqs_3305 55761bdce1082b66a0d08d12949ac185 376 Pfam PF07993 Male sterility protein 7 249 1.4E-49 T 11-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 dqs_3305 55761bdce1082b66a0d08d12949ac185 376 SUPERFAMILY SSF51735 2 286 3.04E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3305 55761bdce1082b66a0d08d12949ac185 376 Gene3D G3DSA:3.40.50.720 1 349 6.4E-68 T 11-10-2018 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 SUPERFAMILY SSF46609 1 88 1.24E-34 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 PIRSF PIRSF000349 1 194 2.6E-79 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 Gene3D G3DSA:2.40.500.20 84 194 1.5E-37 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 Gene3D G3DSA:1.10.287.990 20 82 1.9E-24 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 90 191 9.5E-34 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 83 2.0E-32 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 SUPERFAMILY SSF54719 85 193 6.68E-40 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 158 165 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 PRINTS PR01703 Manganese superoxide dismutase signature 66 79 6.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 6.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 PRINTS PR01703 Manganese superoxide dismutase signature 156 168 6.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 6.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1589 4bad455879f186d676ad5da83d16bff7 194 PRINTS PR01703 Manganese superoxide dismutase signature 119 127 6.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 SUPERFAMILY SSF52374 2 316 2.07E-102 T 11-10-2018 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 460 39.168 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 194 212 7.4E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 7.4E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 7.4E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 225 246 7.4E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 Gene3D G3DSA:1.20.120.640 309 460 2.1E-42 T 11-10-2018 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 Gene3D G3DSA:3.40.50.620 1 308 2.7E-136 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 459 7.7E-170 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 SMART SM00840 345 400 8.0E-24 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 316 3.2E-131 T 11-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 Pfam PF09190 DALR domain 345 400 1.6E-18 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 dqs_1168 5ea67debf9664f63e654a1fa3560c341 460 SUPERFAMILY SSF47323 319 459 9.29E-37 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_0692 7c3dcdc435876ae70971e9af2a621daa 460 Pfam PF05292 Malonyl-CoA decarboxylase C-terminal domain 173 431 9.6E-113 T 11-10-2018 IPR007956 Malonyl-CoA decarboxylase, C-terminal GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 dqs_0692 7c3dcdc435876ae70971e9af2a621daa 460 Pfam PF17408 Malonyl-CoA decarboxylase N-terminal domain 83 170 2.4E-26 T 11-10-2018 IPR035372 Malonyl-CoA decarboxylase, N-terminal KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 dqs_0692 7c3dcdc435876ae70971e9af2a621daa 460 Gene3D G3DSA:3.40.630.150 172 460 2.4E-110 T 11-10-2018 dqs_0692 7c3dcdc435876ae70971e9af2a621daa 460 Gene3D G3DSA:1.20.140.90 25 169 3.9E-36 T 11-10-2018 IPR038351 Malonyl-CoA decarboxylase, N-terminal domain superfamily KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 dqs_0818 d0cb05676058d69387c025fe4b1a26ff 169 Pfam PF13380 CoA binding domain 24 138 1.8E-42 T 11-10-2018 IPR003781 CoA-binding GO:0048037 dqs_0818 d0cb05676058d69387c025fe4b1a26ff 169 SMART SM00881 20 112 5.7E-28 T 11-10-2018 IPR003781 CoA-binding GO:0048037 dqs_0818 d0cb05676058d69387c025fe4b1a26ff 169 Gene3D G3DSA:3.40.50.720 11 145 1.3E-45 T 11-10-2018 dqs_0818 d0cb05676058d69387c025fe4b1a26ff 169 SUPERFAMILY SSF51735 17 141 2.93E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 9.2E-11 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 9.2E-11 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 231 245 9.2E-11 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 9.2E-11 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 287 2.4E-52 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 2.5E-24 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 2.5E-24 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 2.5E-24 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 2.5E-24 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 2.5E-24 T 11-10-2018 dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 Gene3D G3DSA:3.50.50.60 4 308 3.3E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 SUPERFAMILY SSF51905 2 188 1.91E-40 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 SUPERFAMILY SSF51905 143 309 4.25E-30 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3069 3e2737159de69b7f9ac0db1ca80742e6 422 Gene3D G3DSA:3.50.50.60 111 237 3.3E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Gene3D G3DSA:1.10.10.1100 863 914 4.4E-9 T 11-10-2018 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Pfam PF01568 Molydopterin dinucleotide binding domain 598 708 2.5E-27 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Pfam PF04324 BFD-like [2Fe-2S] binding domain 863 911 4.2E-10 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Gene3D G3DSA:2.20.25.90 8 62 4.2E-16 T 11-10-2018 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 SUPERFAMILY SSF53706 10 578 3.01E-201 T 11-10-2018 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Gene3D G3DSA:2.40.40.20 589 715 9.3E-36 T 11-10-2018 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 SMART SM00926 10 63 2.8E-18 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Pfam PF00384 Molybdopterin oxidoreductase 67 495 2.4E-89 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 12 59 1.2E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Gene3D G3DSA:3.40.228.10 147 348 2.9E-192 T 11-10-2018 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 PIRSF PIRSF036643 3 739 2.1E-160 T 11-10-2018 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 Gene3D G3DSA:3.40.50.740 79 550 2.9E-192 T 11-10-2018 dqs_1021 7e3f58ef1da5fb5c4c099813dc282934 920 SUPERFAMILY SSF50692 565 714 3.39E-39 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_0842 d8feb320d1bec5820844f09dc8d9cdc7 219 SMART SM00382 27 214 2.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0842 d8feb320d1bec5820844f09dc8d9cdc7 219 SUPERFAMILY SSF52540 1 217 9.58E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0842 d8feb320d1bec5820844f09dc8d9cdc7 219 Gene3D G3DSA:3.40.50.300 1 219 1.6E-61 T 11-10-2018 dqs_0842 d8feb320d1bec5820844f09dc8d9cdc7 219 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0842 d8feb320d1bec5820844f09dc8d9cdc7 219 Pfam PF00005 ABC transporter 19 166 3.4E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3321 ea8451856de119661f6ca756538e4d7a 309 SMART SM00671 43 78 0.18 T 11-10-2018 IPR006597 Sel1-like repeat dqs_3321 ea8451856de119661f6ca756538e4d7a 309 SMART SM00671 79 114 2.9E-5 T 11-10-2018 IPR006597 Sel1-like repeat dqs_3321 ea8451856de119661f6ca756538e4d7a 309 Gene3D G3DSA:1.10.530.10 164 290 1.2E-37 T 11-10-2018 dqs_3321 ea8451856de119661f6ca756538e4d7a 309 Gene3D G3DSA:1.25.40.10 27 163 6.4E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3321 ea8451856de119661f6ca756538e4d7a 309 Pfam PF01464 Transglycosylase SLT domain 169 269 1.8E-24 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 dqs_3321 ea8451856de119661f6ca756538e4d7a 309 SUPERFAMILY SSF53955 145 283 3.38E-42 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_3321 ea8451856de119661f6ca756538e4d7a 309 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 182 210 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 dqs_3321 ea8451856de119661f6ca756538e4d7a 309 SUPERFAMILY SSF81901 43 117 4.58E-13 T 11-10-2018 dqs_0022 f2f67fd6f9ff979c59d5533bb8040b21 315 Gene3D G3DSA:3.40.190.290 91 293 5.2E-59 T 11-10-2018 dqs_0022 f2f67fd6f9ff979c59d5533bb8040b21 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.5E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0022 f2f67fd6f9ff979c59d5533bb8040b21 315 SUPERFAMILY SSF53850 89 297 5.07E-43 T 11-10-2018 dqs_0022 f2f67fd6f9ff979c59d5533bb8040b21 315 SUPERFAMILY SSF46785 3 111 2.32E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0022 f2f67fd6f9ff979c59d5533bb8040b21 315 Pfam PF03466 LysR substrate binding domain 89 294 7.7E-39 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0022 f2f67fd6f9ff979c59d5533bb8040b21 315 Gene3D G3DSA:1.10.10.10 3 89 3.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1580 042b1df23ac23dea0a9e86e5c437a6cb 558 Gene3D G3DSA:1.10.287.950 54 383 6.4E-68 T 11-10-2018 dqs_1580 042b1df23ac23dea0a9e86e5c437a6cb 558 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 165 347 4.0E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1580 042b1df23ac23dea0a9e86e5c437a6cb 558 SUPERFAMILY SSF58104 86 384 5.75E-72 T 11-10-2018 dqs_1580 042b1df23ac23dea0a9e86e5c437a6cb 558 SMART SM00283 120 381 5.1E-73 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 SUPERFAMILY SSF52172 1 125 2.99E-37 T 11-10-2018 IPR011006 CheY-like superfamily dqs_4125 2ef305c0c255534b4653771b39eb3692 415 Gene3D G3DSA:3.40.50.2300 1 124 4.9E-36 T 11-10-2018 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 SUPERFAMILY SSF46689 315 406 2.87E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 Pfam PF02954 Bacterial regulatory protein, Fis family 364 404 3.9E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 SMART SM00448 2 114 8.9E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 SUPERFAMILY SSF52540 162 341 8.32E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4125 2ef305c0c255534b4653771b39eb3692 415 Pfam PF14532 Sigma-54 interaction domain 135 267 1.5E-18 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 Gene3D G3DSA:1.10.10.60 351 408 2.9E-14 T 11-10-2018 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 Gene3D G3DSA:1.10.8.60 270 346 5.9E-7 T 11-10-2018 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 Pfam PF00072 Response regulator receiver domain 4 114 1.2E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_4125 2ef305c0c255534b4653771b39eb3692 415 Gene3D G3DSA:3.40.50.300 131 269 4.5E-12 T 11-10-2018 dqs_4135 a9c0885d85276ea4eb41bfb9807e629b 112 ProSitePatterns PS00784 Ribosomal protein L34 signature. 70 89 - T 11-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_4135 a9c0885d85276ea4eb41bfb9807e629b 112 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 69 112 2.3E-23 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_4135 a9c0885d85276ea4eb41bfb9807e629b 112 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 69 92 5.0E-7 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_4135 a9c0885d85276ea4eb41bfb9807e629b 112 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 69 112 15.139 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_4135 a9c0885d85276ea4eb41bfb9807e629b 112 Pfam PF00468 Ribosomal protein L34 69 112 7.9E-22 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_4134 625fedd220400c21f42c9e3750ee4d41 82 SUPERFAMILY SSF54211 2 79 4.8E-17 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_4134 625fedd220400c21f42c9e3750ee4d41 82 Gene3D G3DSA:3.30.230.10 1 82 1.5E-20 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_4134 625fedd220400c21f42c9e3750ee4d41 82 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 2 79 3.7E-14 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 dqs_4134 625fedd220400c21f42c9e3750ee4d41 82 Pfam PF00825 Ribonuclease P 2 79 6.5E-18 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 dqs_4134 625fedd220400c21f42c9e3750ee4d41 82 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 23 37 - T 11-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 dqs_4134 625fedd220400c21f42c9e3750ee4d41 82 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 1 56 1.0E-11 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 dqs_1017 a350d7340c9c7e4cb929877296c93db4 310 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 102 298 9.5E-73 T 11-10-2018 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 dqs_1017 a350d7340c9c7e4cb929877296c93db4 310 SUPERFAMILY SSF161098 112 295 9.55E-28 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1017 a350d7340c9c7e4cb929877296c93db4 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 293 1.3E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_1017 a350d7340c9c7e4cb929877296c93db4 310 Gene3D G3DSA:1.10.3720.10 115 306 1.3E-22 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 SMART SM00304 474 526 2.5E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 Pfam PF00069 Protein kinase domain 11 258 1.9E-48 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 SUPERFAMILY SSF158472 474 523 3.27E-7 T 11-10-2018 dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 SMART SM00220 8 270 6.6E-59 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 Gene3D G3DSA:3.30.200.20 1 87 2.8E-24 T 11-10-2018 dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 Pfam PF17203 Single cache domain 3 328 446 1.1E-7 T 11-10-2018 IPR033463 Single cache domain 3 dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 Pfam PF00672 HAMP domain 474 522 8.0E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 Gene3D G3DSA:1.20.1480.50 438 530 6.8E-8 T 11-10-2018 dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 SUPERFAMILY SSF103190 350 445 5.1E-10 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 SUPERFAMILY SSF56112 5 269 4.86E-74 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_0969 dbc752af199d1ae051b2694c5de4ebf3 554 Gene3D G3DSA:1.10.510.10 88 286 3.8E-52 T 11-10-2018 dqs_1720 e5f7c30d0485d6d7323305b6506ea9fa 123 Pfam PF07238 PilZ domain 8 109 5.3E-8 T 11-10-2018 IPR009875 PilZ domain GO:0035438 dqs_1720 e5f7c30d0485d6d7323305b6506ea9fa 123 Gene3D G3DSA:2.40.10.220 9 123 7.1E-45 T 11-10-2018 dqs_3803 e8f15fe526b800c8a45d2efbc27b9ae3 496 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 496 72.121 T 11-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 dqs_3803 e8f15fe526b800c8a45d2efbc27b9ae3 496 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 440 1.2E-173 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 dqs_3803 e8f15fe526b800c8a45d2efbc27b9ae3 496 SUPERFAMILY SSF143968 332 495 3.92E-68 T 11-10-2018 dqs_3803 e8f15fe526b800c8a45d2efbc27b9ae3 496 Gene3D G3DSA:1.20.5.570 464 496 4.3E-15 T 11-10-2018 dqs_3803 e8f15fe526b800c8a45d2efbc27b9ae3 496 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 464 2.7E-172 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 dqs_3803 e8f15fe526b800c8a45d2efbc27b9ae3 496 SUPERFAMILY SSF50475 3 331 4.32E-122 T 11-10-2018 dqs_3803 e8f15fe526b800c8a45d2efbc27b9ae3 496 Gene3D G3DSA:3.40.1670.10 346 463 8.8E-52 T 11-10-2018 dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 SUPERFAMILY SSF58104 227 536 1.28E-64 T 11-10-2018 dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 24 128 2.0E-10 T 11-10-2018 IPR000014 PAS domain dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 Pfam PF08448 PAS fold 21 111 2.5E-7 T 11-10-2018 IPR013656 PAS fold-4 dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 Gene3D G3DSA:1.10.287.950 210 537 4.2E-61 T 11-10-2018 dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 SMART SM00304 207 259 3.2E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 SMART SM00283 274 535 7.0E-61 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 Gene3D G3DSA:3.30.450.20 15 149 7.0E-16 T 11-10-2018 dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 339 501 1.6E-36 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 SMART SM00091 8 74 1.2E-5 T 11-10-2018 IPR000014 PAS domain dqs_1492 b17b49ddd58cbbf81b3f85e48de8cb5d 538 SUPERFAMILY SSF55785 21 113 1.2E-16 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 SUPERFAMILY SSF88659 208 304 5.05E-22 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 PRINTS PR00046 Major sigma-70 factor signature 285 296 1.8E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 PRINTS PR00046 Major sigma-70 factor signature 101 114 1.8E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 PRINTS PR00046 Major sigma-70 factor signature 125 133 1.8E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 PRINTS PR00046 Major sigma-70 factor signature 249 261 1.8E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 PRINTS PR00046 Major sigma-70 factor signature 270 285 1.8E-22 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 Gene3D G3DSA:1.10.10.10 150 226 3.8E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 2 311 37.816 T 11-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 Pfam PF04545 Sigma-70, region 4 245 298 4.2E-13 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 34 311 1.3E-131 T 11-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 SUPERFAMILY SSF88659 150 223 1.05E-8 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 101 114 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 Pfam PF04542 Sigma-70 region 2 77 146 3.8E-20 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 Pfam PF04539 Sigma-70 region 3 157 232 1.8E-11 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 Gene3D G3DSA:1.10.601.10 33 146 4.3E-47 T 11-10-2018 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 Pfam PF00140 Sigma-70 factor, region 1.2 39 71 9.5E-14 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 270 296 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 72 299 1.7E-38 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 SUPERFAMILY SSF88946 39 147 4.71E-46 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_1200 1ddeab0497a763a9280c15d0b22c9eaa 311 Gene3D G3DSA:1.10.10.10 227 309 5.2E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2936 da28a1748bbe5cc322439f2b79097b97 281 Gene3D G3DSA:3.40.50.620 1 269 5.7E-86 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2936 da28a1748bbe5cc322439f2b79097b97 281 SMART SM00893 22 218 1.2E-58 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2936 da28a1748bbe5cc322439f2b79097b97 281 SUPERFAMILY SSF52402 1 267 4.67E-72 T 11-10-2018 dqs_2936 da28a1748bbe5cc322439f2b79097b97 281 PIRSF PIRSF000090 1 271 3.5E-85 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_2936 da28a1748bbe5cc322439f2b79097b97 281 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 162 182 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_2936 da28a1748bbe5cc322439f2b79097b97 281 Pfam PF01012 Electron transfer flavoprotein domain 23 211 1.3E-49 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 450 470 2.0E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 338 359 2.0E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 395 418 2.0E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 435 450 2.0E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 111 131 2.0E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 69 92 2.0E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 371 395 2.0E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 SUPERFAMILY SSF111369 92 178 1.7E-6 T 11-10-2018 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 Gene3D G3DSA:2.40.30.170 356 451 2.4E-12 T 11-10-2018 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 Gene3D G3DSA:1.10.287.470 133 159 5.7E-7 T 11-10-2018 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 Gene3D G3DSA:2.40.30.170 87 97 5.7E-7 T 11-10-2018 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 Pfam PF13533 Biotin-lipoyl like 101 137 7.1E-7 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 ProSitePatterns PS00543 HlyD family secretion proteins signature. 435 457 - T 11-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 Gene3D G3DSA:2.40.50.100 98 132 5.7E-7 T 11-10-2018 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 61 471 5.7E-114 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 Pfam PF13437 HlyD family secretion protein 326 423 1.2E-16 T 11-10-2018 dqs_0716 4e4a69af998eacbfbdf24af97e09a161 471 Gene3D G3DSA:2.40.50.100 319 355 2.4E-12 T 11-10-2018 dqs_2074 c06b2aaead8f2197f5b90737f4678ccf 369 Gene3D G3DSA:3.30.9.10 86 319 2.0E-136 T 11-10-2018 dqs_2074 c06b2aaead8f2197f5b90737f4678ccf 369 Pfam PF01266 FAD dependent oxidoreductase 5 363 4.1E-67 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_2074 c06b2aaead8f2197f5b90737f4678ccf 369 Gene3D G3DSA:3.50.50.60 5 358 2.0E-136 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2074 c06b2aaead8f2197f5b90737f4678ccf 369 SUPERFAMILY SSF51905 4 320 5.76E-45 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3177 31071630d99d5c63d852dc2e9db17e5d 267 Gene3D G3DSA:3.90.226.10 1 205 1.1E-57 T 11-10-2018 dqs_3177 31071630d99d5c63d852dc2e9db17e5d 267 SUPERFAMILY SSF52096 9 261 4.65E-61 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_3177 31071630d99d5c63d852dc2e9db17e5d 267 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 dqs_3177 31071630d99d5c63d852dc2e9db17e5d 267 Gene3D G3DSA:1.10.12.10 206 262 2.8E-29 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_3177 31071630d99d5c63d852dc2e9db17e5d 267 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 261 1.2E-38 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_3458 1ba49dec47bb9d4fbf03f9bcba49e74f 186 Gene3D G3DSA:3.30.1060.10 1 173 5.9E-66 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 dqs_3458 1ba49dec47bb9d4fbf03f9bcba49e74f 186 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 9 168 35.431 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 dqs_3458 1ba49dec47bb9d4fbf03f9bcba49e74f 186 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 11 159 3.3E-54 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 dqs_3458 1ba49dec47bb9d4fbf03f9bcba49e74f 186 Pfam PF01625 Peptide methionine sulfoxide reductase 11 164 1.0E-60 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 dqs_3458 1ba49dec47bb9d4fbf03f9bcba49e74f 186 SUPERFAMILY SSF55068 4 175 3.53E-71 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 dqs_3436 261f96e536091c2d70976532254d6ed6 64 Pfam PF11137 Protein of unknown function (DUF2909) 1 60 8.2E-23 T 11-10-2018 IPR021313 Protein of unknown function DUF2909 dqs_0094 5ea15507f798a3950f86c799b65aa88a 248 Gene3D G3DSA:3.30.70.580 71 236 7.1E-47 T 11-10-2018 dqs_0094 5ea15507f798a3950f86c799b65aa88a 248 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 109 123 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 dqs_0094 5ea15507f798a3950f86c799b65aa88a 248 SUPERFAMILY SSF55120 70 236 2.4E-36 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_0094 5ea15507f798a3950f86c799b65aa88a 248 Gene3D G3DSA:3.30.70.1560 138 219 7.1E-47 T 11-10-2018 dqs_0094 5ea15507f798a3950f86c799b65aa88a 248 Gene3D G3DSA:3.10.290.10 3 53 1.0E-5 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_0094 5ea15507f798a3950f86c799b65aa88a 248 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 75 233 1.2E-35 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 dqs_0094 5ea15507f798a3950f86c799b65aa88a 248 SUPERFAMILY SSF55174 7 90 1.57E-5 T 11-10-2018 dqs_0094 5ea15507f798a3950f86c799b65aa88a 248 Pfam PF00849 RNA pseudouridylate synthase 71 201 8.6E-10 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 24 2.2E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 389 416 2.2E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 418 447 2.2E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 337 519 5.0E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 SMART SM00283 291 552 1.7E-50 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 Gene3D G3DSA:1.10.287.950 222 553 4.5E-64 T 11-10-2018 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 Pfam PF02203 Tar ligand binding domain homologue 1 172 8.5E-11 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 SMART SM00304 223 276 1.8E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 SUPERFAMILY SSF58104 244 552 2.09E-61 T 11-10-2018 dqs_0650 2e78c37446a557e2fbf6336035f73293 553 Pfam PF00672 HAMP domain 223 272 2.5E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0833 96b36b369499b27887370446b3233767 571 Pfam PF13432 Tetratricopeptide repeat 470 524 2.0E-6 T 11-10-2018 dqs_0833 96b36b369499b27887370446b3233767 571 SUPERFAMILY SSF48452 393 560 4.64E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0833 96b36b369499b27887370446b3233767 571 Gene3D G3DSA:1.25.40.10 389 567 4.2E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0833 96b36b369499b27887370446b3233767 571 SUPERFAMILY SSF48452 99 378 8.18E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0833 96b36b369499b27887370446b3233767 571 SMART SM00028 457 491 15.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0833 96b36b369499b27887370446b3233767 571 SMART SM00028 219 252 440.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0833 96b36b369499b27887370446b3233767 571 SMART SM00028 185 218 260.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0833 96b36b369499b27887370446b3233767 571 SMART SM00028 525 558 23.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0833 96b36b369499b27887370446b3233767 571 Gene3D G3DSA:1.25.40.10 125 382 1.7E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0833 96b36b369499b27887370446b3233767 571 Pfam PF14559 Tetratricopeptide repeat 231 298 3.7E-6 T 11-10-2018 dqs_3506 be7e73f266fe4e7e2823b9cf7e1bc2fb 91 Pfam PF04319 NifZ domain 10 81 3.6E-19 T 11-10-2018 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 Gene3D G3DSA:1.20.1260.10 1 158 5.0E-69 T 11-10-2018 IPR012347 Ferritin-like dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 2.3E-76 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 PRINTS PR00601 Bacterioferritin signature 107 127 1.4E-69 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 PRINTS PR00601 Bacterioferritin signature 23 43 1.4E-69 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 PRINTS PR00601 Bacterioferritin signature 44 64 1.4E-69 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 PRINTS PR00601 Bacterioferritin signature 65 85 1.4E-69 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 PRINTS PR00601 Bacterioferritin signature 3 22 1.4E-69 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 PRINTS PR00601 Bacterioferritin signature 86 106 1.4E-69 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 PRINTS PR00601 Bacterioferritin signature 128 149 1.4E-69 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 Pfam PF00210 Ferritin-like domain 8 141 3.2E-38 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 SUPERFAMILY SSF47240 1 155 1.21E-54 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_0685 7d9d90986f083be101b1d720297e7ae3 158 PIRSF PIRSF002560 1 157 4.5E-74 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_3028 edd456d63dea60d8f193c45049c79820 339 Gene3D G3DSA:3.90.1200.10 93 335 9.1E-75 T 11-10-2018 dqs_3028 edd456d63dea60d8f193c45049c79820 339 Pfam PF01636 Phosphotransferase enzyme family 24 253 4.7E-31 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase dqs_3028 edd456d63dea60d8f193c45049c79820 339 SUPERFAMILY SSF56112 4 331 2.86E-60 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_3028 edd456d63dea60d8f193c45049c79820 339 Gene3D G3DSA:3.30.200.20 1 92 1.8E-20 T 11-10-2018 dqs_3028 edd456d63dea60d8f193c45049c79820 339 SMART SM00587 88 257 0.0085 T 11-10-2018 IPR015897 CHK kinase-like dqs_0730 5fe00aa2355b2e4c703b4f9b1d81b429 182 Gene3D G3DSA:3.30.2010.10 65 161 6.2E-7 T 11-10-2018 dqs_0730 5fe00aa2355b2e4c703b4f9b1d81b429 182 Pfam PF01863 Protein of unknown function DUF45 92 154 1.5E-11 T 11-10-2018 IPR002725 Protein of unknown function DUF45 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 SUPERFAMILY SSF52540 548 841 1.97E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 SMART SM00382 198 344 2.0E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 SMART SM00382 599 759 2.5E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Gene3D G3DSA:3.40.50.300 552 765 4.3E-87 T 11-10-2018 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 677 695 1.2E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 710 724 1.2E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 603 621 1.2E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 648 666 1.2E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 335 5.0E-14 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Gene3D G3DSA:1.10.8.60 767 859 4.0E-27 T 11-10-2018 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 633 651 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 767 847 5.3E-25 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 9.8E-13 T 11-10-2018 IPR004176 Clp, N-terminal dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 4.8E-13 T 11-10-2018 IPR004176 Clp, N-terminal dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Pfam PF07724 AAA domain (Cdc48 subfamily) 598 761 4.9E-56 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Gene3D G3DSA:3.40.50.300 148 342 7.6E-76 T 11-10-2018 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Gene3D G3DSA:1.10.1780.10 1 147 5.6E-34 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 Gene3D G3DSA:3.40.50.300 343 546 3.8E-68 T 11-10-2018 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 856 0.0 T 11-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 SMART SM01086 767 856 6.4E-36 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 SUPERFAMILY SSF81923 4 156 2.55E-43 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 dqs_1689 5e36970f5f9e76a3f10bd919a841421d 860 SUPERFAMILY SSF52540 159 547 5.95E-101 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0192 4ea7456361adc699583d689248d1c500 227 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 43 220 1.1E-61 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 dqs_0192 4ea7456361adc699583d689248d1c500 227 Pfam PF03099 Biotin/lipoate A/B protein ligase family 79 175 2.2E-7 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 dqs_0192 4ea7456361adc699583d689248d1c500 227 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 91 144 2.0E-18 T 11-10-2018 dqs_0192 4ea7456361adc699583d689248d1c500 227 Hamap MF_00013 Octanoyltransferase [lipB]. 20 222 38.819 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 dqs_0192 4ea7456361adc699583d689248d1c500 227 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 87 102 - T 11-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 dqs_0192 4ea7456361adc699583d689248d1c500 227 SUPERFAMILY SSF55681 18 219 1.33E-69 T 11-10-2018 dqs_0192 4ea7456361adc699583d689248d1c500 227 Gene3D G3DSA:3.30.930.10 15 219 1.6E-65 T 11-10-2018 dqs_0192 4ea7456361adc699583d689248d1c500 227 PIRSF PIRSF016262 18 222 1.1E-60 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 dqs_3752 2f4d4a76ae541c0c01b5ec57301e880b 156 Gene3D G3DSA:3.40.1280.10 1 156 2.0E-44 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal dqs_3752 2f4d4a76ae541c0c01b5ec57301e880b 156 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 3.9E-43 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 dqs_3752 2f4d4a76ae541c0c01b5ec57301e880b 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 26.47 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 dqs_3752 2f4d4a76ae541c0c01b5ec57301e880b 156 PIRSF PIRSF004505 1 155 7.7E-39 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 dqs_3752 2f4d4a76ae541c0c01b5ec57301e880b 156 SUPERFAMILY SSF75217 1 153 1.83E-43 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases dqs_2869 6f6d2420a06aab00fcb4780caa1db174 225 PRINTS PR01008 Flagellar L-ring protein signature 64 76 1.6E-26 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 dqs_2869 6f6d2420a06aab00fcb4780caa1db174 225 PRINTS PR01008 Flagellar L-ring protein signature 139 154 1.6E-26 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 dqs_2869 6f6d2420a06aab00fcb4780caa1db174 225 PRINTS PR01008 Flagellar L-ring protein signature 186 200 1.6E-26 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 dqs_2869 6f6d2420a06aab00fcb4780caa1db174 225 PRINTS PR01008 Flagellar L-ring protein signature 165 181 1.6E-26 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 dqs_2869 6f6d2420a06aab00fcb4780caa1db174 225 PRINTS PR01008 Flagellar L-ring protein signature 202 216 1.6E-26 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 dqs_2869 6f6d2420a06aab00fcb4780caa1db174 225 Pfam PF02107 Flagellar L-ring protein 42 224 2.1E-60 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 dqs_2869 6f6d2420a06aab00fcb4780caa1db174 225 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 223 25.679 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 dqs_0319 ed287403e638c50aa3676511a6a4971a 256 PIRSF PIRSF037834 1 256 5.3E-102 T 11-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 dqs_0319 ed287403e638c50aa3676511a6a4971a 256 Pfam PF05138 Phenylacetic acid catabolic protein 4 256 2.4E-97 T 11-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 dqs_0319 ed287403e638c50aa3676511a6a4971a 256 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 18 256 4.0E-96 T 11-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 dqs_0319 ed287403e638c50aa3676511a6a4971a 256 SUPERFAMILY SSF47240 10 250 5.41E-80 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_0319 ed287403e638c50aa3676511a6a4971a 256 Gene3D G3DSA:1.20.1260.10 2 256 2.0E-100 T 11-10-2018 IPR012347 Ferritin-like dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 187 487 1.1E-127 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 PRINTS PR00481 Cytosol aminopeptidase signature 263 280 3.7E-56 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 PRINTS PR00481 Cytosol aminopeptidase signature 372 387 3.7E-56 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 PRINTS PR00481 Cytosol aminopeptidase signature 285 306 3.7E-56 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 PRINTS PR00481 Cytosol aminopeptidase signature 322 343 3.7E-56 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 PRINTS PR00481 Cytosol aminopeptidase signature 344 364 3.7E-56 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 496 38.917 T 11-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 348 355 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 SUPERFAMILY SSF52949 2 185 1.65E-36 T 11-10-2018 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 Gene3D G3DSA:3.40.220.10 1 163 1.7E-45 T 11-10-2018 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 Gene3D G3DSA:3.40.630.10 182 496 6.0E-140 T 11-10-2018 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 SUPERFAMILY SSF53187 180 494 5.65E-126 T 11-10-2018 dqs_3044 accfbf19c5199915ba1b6189e35fffaa 500 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 144 1.3E-24 T 11-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 Gene3D G3DSA:2.102.10.10 37 168 3.9E-99 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 75 95 2.2E-37 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 54 69 2.2E-37 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 185 207 2.2E-37 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 143 169 2.2E-37 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 97 117 2.2E-37 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 24 49 2.2E-37 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 SUPERFAMILY SSF50022 8 157 1.02E-43 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 Gene3D G3DSA:3.90.380.10 23 426 3.9E-99 T 11-10-2018 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 196 398 1.8E-9 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 Pfam PF00355 Rieske [2Fe-2S] domain 40 124 1.6E-18 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_1234 fc872794d1783aaf3f1f47f5e876c91e 451 SUPERFAMILY SSF55961 159 439 2.67E-55 T 11-10-2018 dqs_2007 35d57f39c14eace1159fe092c42c389a 267 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 92 264 9.0E-6 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 dqs_2007 35d57f39c14eace1159fe092c42c389a 267 TIGRFAM TIGR03218 catechol_dmpH: 4-oxalocrotonate decarboxylase 4 265 2.3E-135 T 11-10-2018 IPR017630 4-oxalocrotonate decarboxylase KEGG: 00362+4.1.1.77|KEGG: 00621+4.1.1.77|KEGG: 00622+4.1.1.77|MetaCyc: PWY-5419|MetaCyc: PWY-5644|MetaCyc: PWY-5645|MetaCyc: PWY-5647|MetaCyc: PWY-5654|MetaCyc: PWY-6210|MetaCyc: PWY-6214|MetaCyc: PWY-6336|MetaCyc: PWY-7006|MetaCyc: PWY-7009|MetaCyc: PWY-7480 dqs_2007 35d57f39c14eace1159fe092c42c389a 267 SUPERFAMILY SSF56529 8 266 7.85E-75 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2007 35d57f39c14eace1159fe092c42c389a 267 Gene3D G3DSA:3.90.850.10 1 266 1.1E-81 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2359 5186c080aa75f0c9197e7d77228abd51 262 SMART SM00646 103 245 3.4E-6 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 dqs_2359 5186c080aa75f0c9197e7d77228abd51 262 SUPERFAMILY SSF53187 43 248 3.45E-28 T 11-10-2018 dqs_2359 5186c080aa75f0c9197e7d77228abd51 262 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 44 245 2.1E-30 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 dqs_2359 5186c080aa75f0c9197e7d77228abd51 262 Gene3D G3DSA:3.40.630.40 32 251 4.0E-32 T 11-10-2018 dqs_2227 585fd5817a3bb29d74ebfadb98cf85c3 226 Gene3D G3DSA:1.10.530.10 80 211 2.1E-36 T 11-10-2018 dqs_2227 585fd5817a3bb29d74ebfadb98cf85c3 226 Pfam PF01464 Transglycosylase SLT domain 93 185 1.1E-20 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 dqs_2227 585fd5817a3bb29d74ebfadb98cf85c3 226 SUPERFAMILY SSF53955 72 206 5.32E-41 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_2227 585fd5817a3bb29d74ebfadb98cf85c3 226 Pfam PF13511 Domain of unknown function (DUF4124) 22 74 4.9E-8 T 11-10-2018 IPR025392 Domain of unknown function DUF4124 dqs_3080 609c733a2b0c863b1218fe9249e284ea 529 Pfam PF14532 Sigma-54 interaction domain 322 451 4.4E-7 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_3080 609c733a2b0c863b1218fe9249e284ea 529 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 333 346 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_3080 609c733a2b0c863b1218fe9249e284ea 529 Gene3D G3DSA:1.10.8.60 452 527 4.5E-7 T 11-10-2018 dqs_3080 609c733a2b0c863b1218fe9249e284ea 529 Gene3D G3DSA:3.30.450.40 6 189 3.1E-51 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_3080 609c733a2b0c863b1218fe9249e284ea 529 SUPERFAMILY SSF52540 317 519 1.28E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3080 609c733a2b0c863b1218fe9249e284ea 529 Pfam PF01590 GAF domain 53 185 3.7E-6 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_3080 609c733a2b0c863b1218fe9249e284ea 529 Gene3D G3DSA:3.40.50.300 312 451 1.1E-18 T 11-10-2018 dqs_0188 dc1e9528269fb5541d3315e3e5642ae2 345 SUPERFAMILY SSF50685 122 207 2.44E-9 T 11-10-2018 IPR036908 RlpA-like domain superfamily dqs_0188 dc1e9528269fb5541d3315e3e5642ae2 345 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 122 212 4.7E-38 T 11-10-2018 IPR012997 Rare lipoprotein A dqs_0188 dc1e9528269fb5541d3315e3e5642ae2 345 Pfam PF05036 Sporulation related domain 269 343 4.2E-10 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 dqs_0188 dc1e9528269fb5541d3315e3e5642ae2 345 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 8 212 24.688 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 dqs_0188 dc1e9528269fb5541d3315e3e5642ae2 345 Pfam PF03330 Lytic transglycolase 121 209 4.8E-26 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain dqs_0188 dc1e9528269fb5541d3315e3e5642ae2 345 SUPERFAMILY SSF110997 269 343 1.23E-8 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 dqs_0188 dc1e9528269fb5541d3315e3e5642ae2 345 Gene3D G3DSA:2.40.40.10 119 212 3.8E-35 T 11-10-2018 IPR036908 RlpA-like domain superfamily dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 Gene3D G3DSA:3.40.190.10 103 300 8.9E-51 T 11-10-2018 dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 74 5.1E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 SUPERFAMILY SSF46785 15 119 2.15E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 6.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 6.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 6.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 Gene3D G3DSA:3.40.190.10 174 275 8.9E-51 T 11-10-2018 dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 Gene3D G3DSA:1.10.10.10 14 102 8.2E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 Pfam PF03466 LysR substrate binding domain 99 301 6.9E-36 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0653 1e80c8b4c216a93a211188bc74eb5678 321 SUPERFAMILY SSF53850 99 306 1.01E-38 T 11-10-2018 dqs_4047 5511fe67155e48384aedc745628b3c03 906 SMART SM00382 639 782 3.8E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_4047 5511fe67155e48384aedc745628b3c03 906 SMART SM00382 227 372 1.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_4047 5511fe67155e48384aedc745628b3c03 906 SMART SM01086 811 903 6.2E-11 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_4047 5511fe67155e48384aedc745628b3c03 906 Gene3D G3DSA:3.40.50.300 181 371 1.5E-64 T 11-10-2018 dqs_4047 5511fe67155e48384aedc745628b3c03 906 SUPERFAMILY SSF81923 12 130 6.15E-19 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 dqs_4047 5511fe67155e48384aedc745628b3c03 906 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 811 886 1.8E-11 T 11-10-2018 IPR019489 Clp ATPase, C-terminal dqs_4047 5511fe67155e48384aedc745628b3c03 906 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 232 343 3.0E-8 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_4047 5511fe67155e48384aedc745628b3c03 906 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 323 335 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 dqs_4047 5511fe67155e48384aedc745628b3c03 906 SUPERFAMILY SSF52540 588 884 7.43E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4047 5511fe67155e48384aedc745628b3c03 906 Gene3D G3DSA:3.40.50.300 592 809 4.1E-64 T 11-10-2018 dqs_4047 5511fe67155e48384aedc745628b3c03 906 Gene3D G3DSA:1.10.8.60 811 905 1.2E-9 T 11-10-2018 dqs_4047 5511fe67155e48384aedc745628b3c03 906 Pfam PF07724 AAA domain (Cdc48 subfamily) 638 804 1.2E-36 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_4047 5511fe67155e48384aedc745628b3c03 906 Gene3D G3DSA:3.40.50.300 373 586 2.0E-44 T 11-10-2018 dqs_4047 5511fe67155e48384aedc745628b3c03 906 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 894 0.0 T 11-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 dqs_4047 5511fe67155e48384aedc745628b3c03 906 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 750 764 4.8E-30 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_4047 5511fe67155e48384aedc745628b3c03 906 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 688 706 4.8E-30 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_4047 5511fe67155e48384aedc745628b3c03 906 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 717 735 4.8E-30 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_4047 5511fe67155e48384aedc745628b3c03 906 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 643 661 4.8E-30 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 dqs_4047 5511fe67155e48384aedc745628b3c03 906 Gene3D G3DSA:1.10.1780.10 1 161 1.4E-43 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 dqs_4047 5511fe67155e48384aedc745628b3c03 906 SUPERFAMILY SSF52540 188 516 1.95E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 PRINTS PR01798 Succinyl-CoA synthase signature 186 204 1.1E-31 T 11-10-2018 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 PRINTS PR01798 Succinyl-CoA synthase signature 249 266 1.1E-31 T 11-10-2018 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 PRINTS PR01798 Succinyl-CoA synthase signature 85 102 1.1E-31 T 11-10-2018 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 PRINTS PR01798 Succinyl-CoA synthase signature 217 230 1.1E-31 T 11-10-2018 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 245 258 - T 11-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 297 2.9E-124 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 SMART SM00881 4 103 1.4E-27 T 11-10-2018 IPR003781 CoA-binding GO:0048037 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 PIRSF PIRSF001553 1 297 3.4E-113 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 SUPERFAMILY SSF52210 132 296 3.92E-53 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 SUPERFAMILY SSF51735 1 118 4.92E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 Pfam PF02629 CoA binding domain 6 102 5.0E-22 T 11-10-2018 IPR003781 CoA-binding GO:0048037 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 Pfam PF00549 CoA-ligase 160 271 3.3E-14 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 Gene3D G3DSA:3.40.50.720 2 132 4.0E-41 T 11-10-2018 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 297 39.448 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 Gene3D G3DSA:3.40.50.261 133 297 9.0E-66 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_3470 9b9e7a38d5409f644c01104acd500d2b 297 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 161 190 - T 11-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site dqs_1019 77cac4ffc480c6572e08d77f4a1e685a 254 Gene3D G3DSA:3.40.1010.10 1 117 4.9E-38 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 dqs_1019 77cac4ffc480c6572e08d77f4a1e685a 254 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 3 236 3.9E-84 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 dqs_1019 77cac4ffc480c6572e08d77f4a1e685a 254 SUPERFAMILY SSF53790 1 236 3.93E-70 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 dqs_1019 77cac4ffc480c6572e08d77f4a1e685a 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 213 8.8E-47 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 dqs_1019 77cac4ffc480c6572e08d77f4a1e685a 254 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 dqs_1019 77cac4ffc480c6572e08d77f4a1e685a 254 Gene3D G3DSA:3.30.950.10 118 249 1.6E-44 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 dqs_1148 f4bef11290f20a4a9c0d2324494cfee6 212 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 1.8E-86 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 dqs_1148 f4bef11290f20a4a9c0d2324494cfee6 212 Gene3D G3DSA:3.20.19.10 1 184 1.9E-75 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 dqs_1148 f4bef11290f20a4a9c0d2324494cfee6 212 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 42.329 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 dqs_1148 f4bef11290f20a4a9c0d2324494cfee6 212 SUPERFAMILY SSF52016 1 204 1.81E-61 T 11-10-2018 dqs_1148 f4bef11290f20a4a9c0d2324494cfee6 212 Pfam PF00694 Aconitase C-terminal domain 1 132 9.1E-37 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 dqs_1933 5aba9e050e1fdf20a6d5ef803d3fe7aa 184 PIRSF PIRSF018063 13 181 1.8E-55 T 11-10-2018 IPR014490 DNA-binding protein from starved cells-like dqs_1933 5aba9e050e1fdf20a6d5ef803d3fe7aa 184 Pfam PF00210 Ferritin-like domain 40 177 1.3E-27 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 dqs_1933 5aba9e050e1fdf20a6d5ef803d3fe7aa 184 Gene3D G3DSA:1.20.1260.10 28 184 5.7E-50 T 11-10-2018 IPR012347 Ferritin-like dqs_1933 5aba9e050e1fdf20a6d5ef803d3fe7aa 184 SUPERFAMILY SSF47240 32 177 5.23E-37 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_3314 ae9cda46ab137bc768abb092827c6563 289 Pfam PF08668 HDOD domain 23 217 2.5E-15 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_3314 ae9cda46ab137bc768abb092827c6563 289 SUPERFAMILY SSF109604 19 271 4.71E-35 T 11-10-2018 dqs_3314 ae9cda46ab137bc768abb092827c6563 289 Gene3D G3DSA:1.10.3210.10 18 270 3.1E-26 T 11-10-2018 dqs_3214 9b6364fcb59c5930d635b65857026a35 122 SUPERFAMILY SSF54593 3 121 1.0E-17 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3214 9b6364fcb59c5930d635b65857026a35 122 Gene3D G3DSA:3.10.180.10 1 122 3.3E-21 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2539 6fac735a1dabbcef97ec462c6f4935c1 445 SUPERFAMILY SSF56801 44 427 2.75E-48 T 11-10-2018 dqs_2539 6fac735a1dabbcef97ec462c6f4935c1 445 Gene3D G3DSA:3.30.300.30 339 440 1.0E-27 T 11-10-2018 dqs_2539 6fac735a1dabbcef97ec462c6f4935c1 445 Pfam PF00501 AMP-binding enzyme 74 299 2.9E-14 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_2539 6fac735a1dabbcef97ec462c6f4935c1 445 Pfam PF14535 AMP-binding enzyme C-terminal domain 347 439 1.9E-22 T 11-10-2018 IPR028154 AMP-dependent ligase, C-terminal dqs_2539 6fac735a1dabbcef97ec462c6f4935c1 445 Gene3D G3DSA:3.40.50.12780 4 338 1.2E-108 T 11-10-2018 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.818 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.0E-38 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.0E-38 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.0E-38 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 SUPERFAMILY SSF110324 2 81 1.67E-35 T 11-10-2018 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 11-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 3.0E-18 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 Pfam PF01016 Ribosomal L27 protein 2 80 9.2E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 Gene3D G3DSA:2.40.50.100 21 91 1.7E-31 T 11-10-2018 dqs_3300 1e9d6a0dbf6e3e322e8a8d03de5ebf21 91 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 6.1E-41 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 Gene3D G3DSA:1.10.287.130 258 340 1.4E-13 T 11-10-2018 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 Pfam PF00512 His Kinase A (phospho-acceptor) domain 273 338 1.0E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 435 2.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 449 2.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 472 2.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 490 2.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 Pfam PF13493 Domain of unknown function (DUF4118) 46 150 2.6E-25 T 11-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 SUPERFAMILY SSF47384 257 338 2.55E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 Gene3D G3DSA:3.30.565.10 345 493 2.8E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 SMART SM00387 382 493 6.9E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 Gene3D G3DSA:1.20.120.620 41 146 1.6E-25 T 11-10-2018 IPR038318 KdpD, transmembrane domain superfamily dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 SMART SM00388 271 338 1.5E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 383 492 3.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2934 67c3e02c6e33f7d32ad60bae4bbf8d27 500 SUPERFAMILY SSF55874 327 491 1.44E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0434 db6f4c129a1d87e9f90e5411f52b408b 178 SUPERFAMILY SSF56235 3 177 6.11E-57 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_0434 db6f4c129a1d87e9f90e5411f52b408b 178 PIRSF PIRSF039093 1 178 5.3E-85 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 dqs_0434 db6f4c129a1d87e9f90e5411f52b408b 178 Pfam PF00227 Proteasome subunit 5 176 2.3E-20 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 dqs_0434 db6f4c129a1d87e9f90e5411f52b408b 178 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 176 5.1E-83 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 dqs_0434 db6f4c129a1d87e9f90e5411f52b408b 178 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 177 40.346 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 dqs_0434 db6f4c129a1d87e9f90e5411f52b408b 178 Gene3D G3DSA:3.60.20.10 2 178 2.4E-65 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_2414 1ce344d3b897f64387becd8fed84e08f 877 Gene3D G3DSA:2.40.50.180 728 798 4.5E-14 T 11-10-2018 dqs_2414 1ce344d3b897f64387becd8fed84e08f 877 Gene3D G3DSA:2.30.30.40 714 831 4.5E-14 T 11-10-2018 dqs_2414 1ce344d3b897f64387becd8fed84e08f 877 Pfam PF01584 CheW-like domain 712 849 2.6E-14 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_2414 1ce344d3b897f64387becd8fed84e08f 877 SUPERFAMILY SSF50341 709 851 9.81E-20 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_2414 1ce344d3b897f64387becd8fed84e08f 877 SMART SM00260 707 850 3.0E-4 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_0663 c4f0ffa6a6078882445eceb09fce75f2 217 SUPERFAMILY SSF55781 77 212 3.49E-7 T 11-10-2018 dqs_0663 c4f0ffa6a6078882445eceb09fce75f2 217 Gene3D G3DSA:3.30.450.40 37 215 3.3E-50 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_0663 c4f0ffa6a6078882445eceb09fce75f2 217 Pfam PF04340 Protein of unknown function, DUF484 2 212 6.7E-39 T 11-10-2018 IPR007435 Protein of unknown function DUF484 dqs_1645 7d965a12c5f527b84e32b93527a84d89 328 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 dqs_1645 7d965a12c5f527b84e32b93527a84d89 328 Pfam PF01207 Dihydrouridine synthase (Dus) 5 248 9.5E-63 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 dqs_1645 7d965a12c5f527b84e32b93527a84d89 328 SUPERFAMILY SSF51395 2 310 9.16E-62 T 11-10-2018 dqs_1645 7d965a12c5f527b84e32b93527a84d89 328 Gene3D G3DSA:3.20.20.70 1 240 4.2E-71 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1645 7d965a12c5f527b84e32b93527a84d89 328 PIRSF PIRSF006621 1 326 1.3E-71 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 dqs_1645 7d965a12c5f527b84e32b93527a84d89 328 Gene3D G3DSA:1.20.225.30 251 320 2.4E-11 T 11-10-2018 dqs_1645 7d965a12c5f527b84e32b93527a84d89 328 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 317 48.122 T 11-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 dqs_2965 deeb708b201fdac2b9fb44d46729a3e8 222 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 9.7E-57 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 dqs_2965 deeb708b201fdac2b9fb44d46729a3e8 222 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 32.901 T 11-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 dqs_2965 deeb708b201fdac2b9fb44d46729a3e8 222 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 214 6.5E-69 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 dqs_2965 deeb708b201fdac2b9fb44d46729a3e8 222 Gene3D G3DSA:3.40.50.1360 7 206 6.6E-76 T 11-10-2018 dqs_2965 deeb708b201fdac2b9fb44d46729a3e8 222 SUPERFAMILY SSF100950 1 145 2.02E-48 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_2965 deeb708b201fdac2b9fb44d46729a3e8 222 Gene3D G3DSA:3.30.70.260 125 196 6.6E-76 T 11-10-2018 dqs_2965 deeb708b201fdac2b9fb44d46729a3e8 222 SUPERFAMILY SSF75445 127 198 6.67E-22 T 11-10-2018 dqs_2037 42aaf58989c8a7306e1a5562e38f1d58 225 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2037 42aaf58989c8a7306e1a5562e38f1d58 225 Pfam PF00005 ABC transporter 23 168 5.2E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2037 42aaf58989c8a7306e1a5562e38f1d58 225 Gene3D G3DSA:3.40.50.300 1 225 4.2E-67 T 11-10-2018 dqs_2037 42aaf58989c8a7306e1a5562e38f1d58 225 SUPERFAMILY SSF52540 4 222 1.96E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2037 42aaf58989c8a7306e1a5562e38f1d58 225 SMART SM00382 29 217 3.6E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0804 dfe3ea0ec1935d0bdf102047701bdf11 251 SUPERFAMILY SSF160950 2 249 5.49E-86 T 11-10-2018 IPR036268 ZapD domain superfamily dqs_0804 dfe3ea0ec1935d0bdf102047701bdf11 251 Pfam PF07072 Cell division protein 16 225 8.4E-81 T 11-10-2018 IPR009777 Cell division protein ZapD dqs_0804 dfe3ea0ec1935d0bdf102047701bdf11 251 Gene3D G3DSA:2.60.440.10 4 249 9.1E-87 T 11-10-2018 IPR027462 Z ring-associated protein D, C-terminal dqs_0804 dfe3ea0ec1935d0bdf102047701bdf11 251 Gene3D G3DSA:1.10.3900.10 10 177 9.1E-87 T 11-10-2018 dqs_0804 dfe3ea0ec1935d0bdf102047701bdf11 251 Hamap MF_01092 Cell division protein ZapD [zapD]. 1 249 33.983 T 11-10-2018 IPR009777 Cell division protein ZapD dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Gene3D G3DSA:3.20.20.450 818 1065 9.2E-108 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Pfam PF00990 Diguanylate cyclase, GGDEF domain 644 800 1.7E-49 T 11-10-2018 IPR000160 GGDEF domain dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 SMART SM00086 593 633 1.5E-4 T 11-10-2018 IPR001610 PAC motif dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Pfam PF17201 Cache 3/Cache 2 fusion domain 144 307 4.1E-32 T 11-10-2018 IPR033462 Cache 3/Cache 2 fusion domain dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 SUPERFAMILY SSF55781 347 506 2.7E-13 T 11-10-2018 dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 SUPERFAMILY SSF141868 820 1063 3.01E-95 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 640 803 7.1E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 SMART SM00267 633 805 4.4E-67 T 11-10-2018 IPR000160 GGDEF domain dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Pfam PF00563 EAL domain 821 1055 2.4E-77 T 11-10-2018 IPR001633 EAL domain dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Gene3D G3DSA:3.30.70.270 643 817 1.4E-60 T 11-10-2018 dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Pfam PF13185 GAF domain 365 503 1.1E-16 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 SUPERFAMILY SSF55073 649 806 1.26E-53 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Pfam PF13426 PAS domain 531 632 2.5E-14 T 11-10-2018 IPR000014 PAS domain dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 SUPERFAMILY SSF55785 512 631 1.74E-14 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Gene3D G3DSA:3.30.450.20 198 309 2.6E-14 T 11-10-2018 dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Gene3D G3DSA:3.30.450.20 523 642 1.8E-17 T 11-10-2018 dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 Gene3D G3DSA:3.30.450.40 344 517 6.7E-16 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 SMART SM00052 815 1060 1.7E-129 T 11-10-2018 IPR001633 EAL domain dqs_0575 f5b47ba3792bafaa549abcedeb3afc10 1070 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 523 638 1.9E-10 T 11-10-2018 IPR000014 PAS domain dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 PIRSF PIRSF001263 1 149 8.2E-49 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 Hamap MF_00535 Cyanate hydratase [cynS]. 1 149 83.389 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 PRINTS PR01693 Cyanase signature 85 99 1.6E-25 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 PRINTS PR01693 Cyanase signature 36 53 1.6E-25 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 PRINTS PR01693 Cyanase signature 16 31 1.6E-25 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 PRINTS PR01693 Cyanase signature 134 144 1.6E-25 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 PRINTS PR01693 Cyanase signature 103 119 1.6E-25 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 Gene3D G3DSA:1.10.260.40 2 82 4.1E-30 T 11-10-2018 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 Gene3D G3DSA:3.30.1160.10 83 149 3.3E-34 T 11-10-2018 IPR036581 Cyanate lyase, C-terminal domain superfamily GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 Pfam PF02560 Cyanate lyase C-terminal domain 81 147 2.7E-35 T 11-10-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 TIGRFAM TIGR00673 cynS: cyanase 3 149 9.0E-51 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 SUPERFAMILY SSF47413 2 79 3.32E-20 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 SUPERFAMILY SSF55234 82 149 2.62E-30 T 11-10-2018 IPR036581 Cyanate lyase, C-terminal domain superfamily GO:0009439 KEGG: 00910+4.2.1.104 dqs_2628 95cc22f16e0ca9d4448301fec16238c4 149 SMART SM01116 77 149 5.9E-51 T 11-10-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00910+4.2.1.104 dqs_0697 74b9269c71991897e3124230dd3ae07f 702 SMART SM01080 28 360 2.5E-76 T 11-10-2018 IPR007890 CHASE2 dqs_0697 74b9269c71991897e3124230dd3ae07f 702 SUPERFAMILY SSF55073 454 640 1.88E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0697 74b9269c71991897e3124230dd3ae07f 702 Gene3D G3DSA:3.30.70.1230 449 648 3.1E-53 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0697 74b9269c71991897e3124230dd3ae07f 702 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 462 635 4.6E-25 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 dqs_0697 74b9269c71991897e3124230dd3ae07f 702 Pfam PF05226 CHASE2 domain 19 355 9.9E-55 T 11-10-2018 IPR007890 CHASE2 dqs_0697 74b9269c71991897e3124230dd3ae07f 702 SMART SM00044 420 629 1.7E-6 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 11-10-2018 IPR019844 Cold-shock conserved site dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 SUPERFAMILY SSF50249 3 68 7.71E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 PRINTS PR00050 Cold shock protein signature 27 36 4.6E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 PRINTS PR00050 Cold shock protein signature 42 60 4.6E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 PRINTS PR00050 Cold shock protein signature 6 21 4.6E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 SMART SM00357 5 69 1.5E-30 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 PIRSF PIRSF002599 1 69 5.5E-24 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 67 4.5E-30 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_2253 421bfd43bbe35a9a483b3b49751829b4 69 Gene3D G3DSA:2.40.50.140 4 67 5.2E-29 T 11-10-2018 dqs_0722 c54763fb481059f9537d0721ceda7b8f 229 SUPERFAMILY SSF54001 64 129 8.97E-8 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_0722 c54763fb481059f9537d0721ceda7b8f 229 Gene3D G3DSA:3.10.620.30 29 228 7.1E-73 T 11-10-2018 dqs_0722 c54763fb481059f9537d0721ceda7b8f 229 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 65 180 2.9E-13 T 11-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted dqs_1584 bf000381dccdc6e285e8a3591776a72b 296 PIRSF PIRSF002884 82 296 2.1E-73 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 dqs_1584 bf000381dccdc6e285e8a3591776a72b 296 Gene3D G3DSA:1.10.287.500 118 251 8.6E-49 T 11-10-2018 dqs_1584 bf000381dccdc6e285e8a3591776a72b 296 SUPERFAMILY SSF75708 96 295 4.18E-62 T 11-10-2018 dqs_1584 bf000381dccdc6e285e8a3591776a72b 296 Pfam PF04344 Chemotaxis phosphatase, CheZ 100 296 4.3E-75 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 Pfam PF00128 Alpha amylase, catalytic domain 170 234 5.6E-5 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 504 602 2.5E-16 T 11-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 SMART SM00642 143 493 5.1E-4 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 SUPERFAMILY SSF51445 65 495 1.15E-77 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 Gene3D G3DSA:2.60.40.1180 499 604 5.7E-32 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 17 601 5.6E-162 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 PIRSF PIRSF000463 14 605 1.7E-163 T 11-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 29 100 2.7E-12 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 SUPERFAMILY SSF51011 499 602 1.37E-26 T 11-10-2018 dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 Gene3D G3DSA:2.60.40.10 14 114 2.2E-23 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_1945 2f7d72d025df303dd3916a6c9841b2a9 605 Gene3D G3DSA:3.20.20.80 117 498 2.8E-111 T 11-10-2018 dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 Gene3D G3DSA:3.40.980.10 174 325 2.9E-130 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 Pfam PF03453 MoeA N-terminal region (domain I and II) 7 166 2.9E-43 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 Pfam PF00994 Probable molybdopterin binding domain 179 314 1.1E-24 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 176 312 5.7E-28 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 Gene3D G3DSA:3.90.105.10 26 173 2.9E-130 T 11-10-2018 dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 SMART SM00852 179 316 1.4E-44 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 Gene3D G3DSA:2.170.190.11 49 140 2.9E-130 T 11-10-2018 dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 Gene3D G3DSA:2.40.340.10 326 391 2.9E-130 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 SUPERFAMILY SSF63867 327 398 3.66E-15 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 Pfam PF03454 MoeA C-terminal region (domain IV) 330 395 3.7E-12 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 SUPERFAMILY SSF63882 5 174 1.57E-51 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1685 d8d1b4dd665615493be9d15d22f91219 401 SUPERFAMILY SSF53218 176 320 2.62E-44 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily dqs_2382 95200fdd4a2427580bec535e9998d450 157 Pfam PF05099 Tellurite resistance protein TerB 9 144 2.0E-32 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal dqs_2382 95200fdd4a2427580bec535e9998d450 157 Gene3D G3DSA:1.10.3680.10 2 140 1.4E-16 T 11-10-2018 IPR029024 TerB-like dqs_2382 95200fdd4a2427580bec535e9998d450 157 SUPERFAMILY SSF158682 25 148 6.93E-24 T 11-10-2018 IPR029024 TerB-like dqs_1158 9b94fc2b8b5a8ca532d3eaae8a606085 432 SUPERFAMILY SSF53244 293 426 8.42E-28 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_1158 9b94fc2b8b5a8ca532d3eaae8a606085 432 Gene3D G3DSA:3.90.190.20 295 431 6.8E-28 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_1158 9b94fc2b8b5a8ca532d3eaae8a606085 432 PIRSF PIRSF001563 3 432 9.4E-104 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 dqs_1158 9b94fc2b8b5a8ca532d3eaae8a606085 432 SUPERFAMILY SSF53623 6 291 3.85E-85 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_1158 9b94fc2b8b5a8ca532d3eaae8a606085 432 Pfam PF08245 Mur ligase middle domain 47 187 2.9E-12 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 dqs_1158 9b94fc2b8b5a8ca532d3eaae8a606085 432 Gene3D G3DSA:3.40.1190.10 2 294 2.6E-88 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_1158 9b94fc2b8b5a8ca532d3eaae8a606085 432 TIGRFAM TIGR01499 folC: bifunctional protein FolC 26 425 3.3E-94 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 SMART SM01096 419 542 2.5E-75 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 837 844 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Gene3D G3DSA:1.10.1030.10 403 548 6.5E-50 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 3.2E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 3.2E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 3.2E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 3.2E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 3.2E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 3.2E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 3.2E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 704 718 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Gene3D G3DSA:3.40.50.20 1 116 3.5E-51 T 11-10-2018 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1050 0.0 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Gene3D G3DSA:3.40.50.20 549 657 2.0E-49 T 11-10-2018 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 422 542 3.7E-42 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 SUPERFAMILY SSF52440 551 670 8.06E-50 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 SUPERFAMILY SSF52335 935 1070 1.3E-37 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 4.9E-73 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 668 873 2.3E-35 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Gene3D G3DSA:3.40.50.1380 935 1072 2.4E-36 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 SUPERFAMILY SSF56059 128 401 4.42E-110 T 11-10-2018 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Gene3D G3DSA:3.30.470.20 119 402 4.1E-130 T 11-10-2018 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Gene3D G3DSA:3.30.470.20 660 934 3.1E-120 T 11-10-2018 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.264 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Pfam PF02142 MGS-like domain 955 1041 1.0E-21 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 SUPERFAMILY SSF48108 396 549 1.44E-53 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 SUPERFAMILY SSF56059 668 932 4.95E-104 T 11-10-2018 dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 SMART SM00851 954 1041 4.8E-34 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 SUPERFAMILY SSF52440 1 127 4.6E-51 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_1505 c63495ee7559c7b4325bbdef9fa61a33 1075 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.444 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_2102 1c0a24dbc0b619872f1b1f639b35ecd5 215 Gene3D G3DSA:3.30.70.20 1 38 8.5E-10 T 11-10-2018 dqs_2102 1c0a24dbc0b619872f1b1f639b35ecd5 215 Gene3D G3DSA:3.30.70.20 39 215 1.1E-52 T 11-10-2018 dqs_2102 1c0a24dbc0b619872f1b1f639b35ecd5 215 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 90 101 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_2102 1c0a24dbc0b619872f1b1f639b35ecd5 215 Pfam PF13247 4Fe-4S dicluster domain 51 108 6.6E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_2102 1c0a24dbc0b619872f1b1f639b35ecd5 215 SUPERFAMILY SSF54862 1 211 5.13E-62 T 11-10-2018 dqs_2626 2d61a28bf0568cb6b4c2ef017a3902ac 290 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 83 280 6.6E-70 T 11-10-2018 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 dqs_2626 2d61a28bf0568cb6b4c2ef017a3902ac 290 SUPERFAMILY SSF161098 95 278 2.22E-24 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2626 2d61a28bf0568cb6b4c2ef017a3902ac 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 287 4.7E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_2626 2d61a28bf0568cb6b4c2ef017a3902ac 290 Gene3D G3DSA:1.10.3720.10 97 287 1.8E-20 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SUPERFAMILY SSF158472 189 237 5.62E-8 T 11-10-2018 dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 249 377 4.9E-13 T 11-10-2018 IPR000014 PAS domain dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Gene3D G3DSA:1.20.1480.50 150 245 3.7E-8 T 11-10-2018 dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SMART SM00304 187 239 2.1E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SUPERFAMILY SSF55073 386 544 2.35E-36 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SMART SM00086 328 370 4.8E-4 T 11-10-2018 IPR001610 PAC motif dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Pfam PF00563 EAL domain 559 796 2.8E-66 T 11-10-2018 IPR001633 EAL domain dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 379 538 2.2E-33 T 11-10-2018 IPR000160 GGDEF domain dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SMART SM00052 553 801 7.3E-96 T 11-10-2018 IPR001633 EAL domain dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Gene3D G3DSA:3.20.20.450 554 809 6.1E-89 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Gene3D G3DSA:3.30.70.270 383 553 1.5E-43 T 11-10-2018 dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Gene3D G3DSA:3.30.450.20 249 322 2.8E-18 T 11-10-2018 dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SUPERFAMILY SSF141868 559 807 5.75E-80 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SUPERFAMILY SSF55785 238 367 7.68E-21 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Pfam PF00990 Diguanylate cyclase, GGDEF domain 381 536 1.0E-39 T 11-10-2018 IPR000160 GGDEF domain dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Pfam PF00672 HAMP domain 190 236 1.2E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SMART SM00267 370 543 1.6E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 SMART SM00091 253 321 6.9E-4 T 11-10-2018 IPR000014 PAS domain dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Gene3D G3DSA:2.10.70.100 325 372 1.5E-13 T 11-10-2018 dqs_0691 311a046ebfa7483f2aeed5ea9b71647b 815 Pfam PF08447 PAS fold 275 363 7.2E-16 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_0958 75cb0e61517fa4cccc49df588afa8b57 278 Gene3D G3DSA:3.40.50.11690 137 272 3.3E-32 T 11-10-2018 dqs_0958 75cb0e61517fa4cccc49df588afa8b57 278 Pfam PF03799 Cell division protein FtsQ 149 258 2.3E-23 T 11-10-2018 IPR005548 Cell division protein FtsQ/DivIB dqs_0958 75cb0e61517fa4cccc49df588afa8b57 278 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 36 266 21.335 T 11-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 dqs_0958 75cb0e61517fa4cccc49df588afa8b57 278 Pfam PF08478 POTRA domain, FtsQ-type 66 135 1.1E-15 T 11-10-2018 IPR013685 POTRA domain, FtsQ-type dqs_0958 75cb0e61517fa4cccc49df588afa8b57 278 Gene3D G3DSA:3.10.20.310 65 135 5.6E-18 T 11-10-2018 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 SUPERFAMILY SSF46689 341 485 6.87E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 SUPERFAMILY SSF52172 4 174 5.98E-41 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2849 a4587dc22ff8071d571e30132751bef0 492 Gene3D G3DSA:3.40.50.300 119 299 2.7E-64 T 11-10-2018 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 Pfam PF00158 Sigma-54 interaction domain 130 295 2.4E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 Pfam PF00072 Response regulator receiver domain 7 116 2.9E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 Gene3D G3DSA:1.10.10.60 432 488 1.6E-12 T 11-10-2018 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 Gene3D G3DSA:3.40.50.2300 6 118 1.1E-31 T 11-10-2018 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 468 488 5.4E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 451 468 5.4E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 SUPERFAMILY SSF52540 130 370 1.36E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2849 a4587dc22ff8071d571e30132751bef0 492 SMART SM00448 5 116 3.8E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 Pfam PF02954 Bacterial regulatory protein, Fis family 446 485 2.5E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 Gene3D G3DSA:1.10.8.60 300 375 3.2E-22 T 11-10-2018 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 341 350 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_2849 a4587dc22ff8071d571e30132751bef0 492 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 153 166 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_2849 a4587dc22ff8071d571e30132751bef0 492 SMART SM00382 149 293 1.1E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0164 f9a34a65dea06060d1b0cdf97042533a 157 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 12.179 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 dqs_0164 f9a34a65dea06060d1b0cdf97042533a 157 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 5.4E-36 T 11-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 dqs_0164 f9a34a65dea06060d1b0cdf97042533a 157 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 1.6E-27 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 dqs_0164 f9a34a65dea06060d1b0cdf97042533a 157 SUPERFAMILY SSF81573 63 121 8.89E-5 T 11-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily dqs_0468 572c4fc8e26e2b6bc768ede3c5610854 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 223 5.2E-28 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0468 572c4fc8e26e2b6bc768ede3c5610854 228 SMART SM00448 1 112 3.3E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0468 572c4fc8e26e2b6bc768ede3c5610854 228 Gene3D G3DSA:1.10.10.10 125 227 4.7E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0468 572c4fc8e26e2b6bc768ede3c5610854 228 Gene3D G3DSA:3.40.50.2300 1 121 2.1E-36 T 11-10-2018 dqs_0468 572c4fc8e26e2b6bc768ede3c5610854 228 SUPERFAMILY SSF52172 1 182 2.17E-37 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0468 572c4fc8e26e2b6bc768ede3c5610854 228 SMART SM00862 148 223 1.3E-29 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0468 572c4fc8e26e2b6bc768ede3c5610854 228 Pfam PF00072 Response regulator receiver domain 3 112 1.1E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 SUPERFAMILY SSF54862 446 546 1.48E-29 T 11-10-2018 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 57 2.7E-7 T 11-10-2018 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 Gene3D G3DSA:3.50.50.60 7 384 1.6E-196 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 178 193 6.0E-6 T 11-10-2018 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 6.0E-6 T 11-10-2018 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 442 545 2.9E-51 T 11-10-2018 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 SUPERFAMILY SSF54373 210 305 5.49E-37 T 11-10-2018 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 Gene3D G3DSA:3.30.9.90 79 446 1.6E-196 T 11-10-2018 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 Gene3D G3DSA:3.30.70.20 447 542 1.5E-39 T 11-10-2018 dqs_2284 073598ab7c315f9291abc32b761f8a3e 547 SUPERFAMILY SSF51905 1 444 9.27E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1191 49b2a98b7001605b1812b7156825274e 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 8.9E-41 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1191 49b2a98b7001605b1812b7156825274e 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 8.9E-41 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1191 49b2a98b7001605b1812b7156825274e 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 8.9E-41 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1191 49b2a98b7001605b1812b7156825274e 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.96 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1191 49b2a98b7001605b1812b7156825274e 119 Gene3D G3DSA:1.10.720.90 2 55 3.1E-26 T 11-10-2018 dqs_1191 49b2a98b7001605b1812b7156825274e 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.7E-49 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1191 49b2a98b7001605b1812b7156825274e 119 Pfam PF00453 Ribosomal protein L20 3 109 1.9E-49 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1191 49b2a98b7001605b1812b7156825274e 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 71 3.0E-14 T 11-10-2018 dqs_1191 49b2a98b7001605b1812b7156825274e 119 SUPERFAMILY SSF74731 2 115 4.58E-49 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1191 49b2a98b7001605b1812b7156825274e 119 Gene3D G3DSA:1.10.1900.20 56 119 3.2E-27 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1191 49b2a98b7001605b1812b7156825274e 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 Gene3D G3DSA:3.40.50.620 5 393 1.8E-142 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 561 39.597 T 11-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 Pfam PF01588 Putative tRNA binding domain 618 720 5.8E-21 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 Pfam PF09334 tRNA synthetases class I (M) 5 410 3.5E-142 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 Gene3D G3DSA:2.20.28.20 139 173 1.8E-142 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 Gene3D G3DSA:2.40.50.140 602 723 2.8E-33 T 11-10-2018 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 SUPERFAMILY SSF57770 139 173 1.31E-11 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 SUPERFAMILY SSF50249 611 722 1.47E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 PRINTS PR01041 Methionyl-tRNA synthetase signature 304 319 4.6E-23 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 4.6E-23 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 4.6E-23 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 PRINTS PR01041 Methionyl-tRNA synthetase signature 260 271 4.6E-23 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 4.6E-23 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 PRINTS PR01041 Methionyl-tRNA synthetase signature 398 409 4.6E-23 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 Gene3D G3DSA:1.10.730.10 394 552 3.6E-34 T 11-10-2018 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 5 532 9.5E-163 T 11-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 SUPERFAMILY SSF47323 403 562 2.18E-40 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 582 723 4.9E-38 T 11-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 dqs_3340 026fad8ea4cbe50304749acf7a264c5c 723 SUPERFAMILY SSF52374 3 398 3.75E-93 T 11-10-2018 dqs_3040 4074458977f87e331c5e955984b7fea7 265 Gene3D G3DSA:1.10.1270.20 178 264 1.9E-32 T 11-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 dqs_3040 4074458977f87e331c5e955984b7fea7 265 SUPERFAMILY SSF75217 10 256 6.28E-96 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases dqs_3040 4074458977f87e331c5e955984b7fea7 265 Gene3D G3DSA:3.40.1280.10 7 177 3.9E-63 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal dqs_3040 4074458977f87e331c5e955984b7fea7 265 PIRSF PIRSF000386 9 263 5.1E-89 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 dqs_3040 4074458977f87e331c5e955984b7fea7 265 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 31 233 2.1E-55 T 11-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 dqs_3040 4074458977f87e331c5e955984b7fea7 265 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 265 111.27 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 dqs_3040 4074458977f87e331c5e955984b7fea7 265 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 10 243 1.8E-88 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 dqs_1517 46a9b102e7a400aa334c33f95afccb4f 242 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 230 3.2E-57 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1517 46a9b102e7a400aa334c33f95afccb4f 242 SUPERFAMILY SSF51351 3 241 1.7E-84 T 11-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1517 46a9b102e7a400aa334c33f95afccb4f 242 ProSitePatterns PS00171 Triosephosphate isomerase active site. 160 170 - T 11-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1517 46a9b102e7a400aa334c33f95afccb4f 242 Gene3D G3DSA:3.20.20.70 1 242 3.3E-93 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1517 46a9b102e7a400aa334c33f95afccb4f 242 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 241 56.515 T 11-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1517 46a9b102e7a400aa334c33f95afccb4f 242 Pfam PF00121 Triosephosphate isomerase 4 239 4.3E-83 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1309 9e318c2b43afe91359f4704dc83da8e7 411 Pfam PF05977 Transmembrane secretion effector 4 389 1.5E-51 T 11-10-2018 IPR010290 Transmembrane secretion effector dqs_1309 9e318c2b43afe91359f4704dc83da8e7 411 Gene3D G3DSA:1.20.1250.20 2 392 2.3E-34 T 11-10-2018 dqs_1309 9e318c2b43afe91359f4704dc83da8e7 411 SUPERFAMILY SSF103473 5 395 2.62E-44 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2416 b944768e0dd00a256faad23dd182eb20 323 Gene3D G3DSA:3.40.190.170 24 322 5.5E-94 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily dqs_2416 b944768e0dd00a256faad23dd182eb20 323 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 288 1.3E-27 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 dqs_3022 52df3cb29dad2edd26c11243d80f429a 228 SUPERFAMILY SSF51206 10 148 1.26E-27 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_3022 52df3cb29dad2edd26c11243d80f429a 228 Pfam PF00027 Cyclic nucleotide-binding domain 34 119 6.8E-11 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_3022 52df3cb29dad2edd26c11243d80f429a 228 Gene3D G3DSA:1.10.10.10 146 216 2.2E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3022 52df3cb29dad2edd26c11243d80f429a 228 SMART SM00419 159 207 9.6E-9 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_3022 52df3cb29dad2edd26c11243d80f429a 228 SUPERFAMILY SSF46785 150 215 1.78E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3022 52df3cb29dad2edd26c11243d80f429a 228 Pfam PF13545 Crp-like helix-turn-helix domain 152 214 1.1E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_3022 52df3cb29dad2edd26c11243d80f429a 228 Gene3D G3DSA:2.60.120.10 6 145 6.5E-43 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_0092 369a22f0b5edf6507729a792cf733b98 324 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 298 39.005 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 dqs_0092 369a22f0b5edf6507729a792cf733b98 324 Pfam PF04381 Putative exonuclease, RdgC 1 296 1.0E-125 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 Pfam PF01842 ACT domain 354 421 3.7E-14 T 11-10-2018 IPR002912 ACT domain dqs_2210 027e476edec1bfa5bb781738aa26afed 435 SUPERFAMILY SSF55347 137 302 2.68E-53 T 11-10-2018 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 SUPERFAMILY SSF55021 353 423 4.58E-13 T 11-10-2018 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 Pfam PF00742 Homoserine dehydrogenase 137 315 9.8E-65 T 11-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 11-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 Gene3D G3DSA:3.40.50.720 4 340 2.9E-173 T 11-10-2018 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 PIRSF PIRSF000098 1 435 4.4E-167 T 11-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 SUPERFAMILY SSF51735 1 158 5.34E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2210 027e476edec1bfa5bb781738aa26afed 435 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 2.1E-22 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 Gene3D G3DSA:3.30.70.260 349 423 2.9E-173 T 11-10-2018 dqs_2210 027e476edec1bfa5bb781738aa26afed 435 Gene3D G3DSA:3.30.360.10 136 348 2.9E-173 T 11-10-2018 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 Pfam PF01297 Zinc-uptake complex component A periplasmic 28 295 3.1E-65 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 Gene3D G3DSA:3.40.50.1980 169 299 5.6E-43 T 11-10-2018 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 SUPERFAMILY SSF53807 25 299 6.87E-74 T 11-10-2018 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 Gene3D G3DSA:3.40.50.1980 25 166 2.6E-38 T 11-10-2018 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00691 Adhesin B signature 50 68 5.1E-17 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00691 Adhesin B signature 69 88 5.1E-17 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00691 Adhesin B signature 25 46 5.1E-17 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00691 Adhesin B signature 180 197 5.1E-17 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00691 Adhesin B signature 256 274 5.1E-17 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00691 Adhesin B signature 277 295 5.1E-17 T 11-10-2018 IPR006129 Adhesin B GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00690 Adhesin family signature 233 251 2.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00690 Adhesin family signature 56 69 2.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00690 Adhesin family signature 264 283 2.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00690 Adhesin family signature 180 201 2.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00690 Adhesin family signature 25 43 2.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_1330 56123860a4fdd13c76da6402ea69f326 315 PRINTS PR00690 Adhesin family signature 69 86 2.0E-34 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 SUPERFAMILY SSF54292 1 74 5.35E-21 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Gene3D G3DSA:3.10.20.740 1 124 1.7E-42 T 11-10-2018 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 76 3.7E-20 T 11-10-2018 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Gene3D G3DSA:2.40.40.20 688 764 4.0E-5 T 11-10-2018 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 SUPERFAMILY SSF53706 213 649 2.88E-86 T 11-10-2018 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Gene3D G3DSA:3.40.228.10 345 409 4.2E-15 T 11-10-2018 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 SMART SM00929 83 123 4.5E-21 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 625 9.0E-197 T 11-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 SUPERFAMILY SSF54862 75 210 3.89E-37 T 11-10-2018 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Pfam PF00384 Molybdopterin oxidoreductase 272 625 1.8E-28 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 145 155 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Gene3D G3DSA:3.40.50.740 279 344 4.2E-15 T 11-10-2018 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Gene3D G3DSA:3.40.50.740 444 658 4.5E-18 T 11-10-2018 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 SUPERFAMILY SSF50692 702 766 5.2E-6 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Pfam PF01568 Molydopterin dinucleotide binding domain 696 752 2.0E-5 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 122 5.8E-17 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1526 894645f74ab639dcee0faf3d57e181b9 771 Gene3D G3DSA:3.30.70.20 125 204 3.6E-7 T 11-10-2018 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 422 7.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 408 7.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 462 7.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 7.4E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 Gene3D G3DSA:3.30.565.10 308 463 1.2E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 SMART SM00387 357 464 2.0E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 SMART SM00388 245 313 1.9E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 Gene3D G3DSA:1.10.287.130 190 307 3.8E-17 T 11-10-2018 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 307 1.3E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 SUPERFAMILY SSF47384 230 308 9.61E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 463 1.6E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 SUPERFAMILY SSF55874 303 463 3.27E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2903 0294c1c667a8d878e90c16c4eb22845b 464 SMART SM00304 192 244 2.2E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3913 ef2db012beb17ca23c166e0e8056aba3 392 Gene3D G3DSA:3.40.1090.10 6 306 5.6E-53 T 11-10-2018 dqs_3913 ef2db012beb17ca23c166e0e8056aba3 392 SUPERFAMILY SSF52151 13 303 7.85E-44 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase dqs_3913 ef2db012beb17ca23c166e0e8056aba3 392 Pfam PF01734 Patatin-like phospholipase 18 229 1.4E-17 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 dqs_2112 ff44c778ac99b95c7ac994b1e9433b3c 290 Gene3D G3DSA:3.40.50.1820 7 288 1.3E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2112 ff44c778ac99b95c7ac994b1e9433b3c 290 SUPERFAMILY SSF53474 6 286 7.11E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2112 ff44c778ac99b95c7ac994b1e9433b3c 290 Pfam PF12697 Alpha/beta hydrolase family 35 280 1.2E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2112 ff44c778ac99b95c7ac994b1e9433b3c 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 9.3E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2112 ff44c778ac99b95c7ac994b1e9433b3c 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 61 76 9.3E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2112 ff44c778ac99b95c7ac994b1e9433b3c 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 9.3E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2112 ff44c778ac99b95c7ac994b1e9433b3c 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 9.3E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_3941 9b43b4a6cbc7aeb18ce949c57be133fe 114 Gene3D G3DSA:1.10.260.40 30 111 7.9E-28 T 11-10-2018 dqs_3941 9b43b4a6cbc7aeb18ce949c57be133fe 114 SMART SM00530 20 97 5.4E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_3941 9b43b4a6cbc7aeb18ce949c57be133fe 114 SUPERFAMILY SSF47413 37 112 1.83E-21 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_3941 9b43b4a6cbc7aeb18ce949c57be133fe 114 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 33 111 1.8E-26 T 11-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 dqs_3941 9b43b4a6cbc7aeb18ce949c57be133fe 114 Pfam PF01381 Helix-turn-helix 52 96 1.6E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_1098 5ea8cac38969bc74adee98da119bef22 239 Gene3D G3DSA:1.10.10.10 6 74 3.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1098 5ea8cac38969bc74adee98da119bef22 239 SMART SM00895 98 224 1.3E-24 T 11-10-2018 IPR011711 GntR, C-terminal dqs_1098 5ea8cac38969bc74adee98da119bef22 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 7.8E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1098 5ea8cac38969bc74adee98da119bef22 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 7.8E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1098 5ea8cac38969bc74adee98da119bef22 239 SMART SM00345 15 74 9.4E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1098 5ea8cac38969bc74adee98da119bef22 239 Gene3D G3DSA:1.20.120.530 89 230 1.1E-32 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_1098 5ea8cac38969bc74adee98da119bef22 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 9.3E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1098 5ea8cac38969bc74adee98da119bef22 239 Pfam PF07729 FCD domain 98 222 2.2E-26 T 11-10-2018 IPR011711 GntR, C-terminal dqs_1098 5ea8cac38969bc74adee98da119bef22 239 SUPERFAMILY SSF48008 95 229 3.66E-29 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_1098 5ea8cac38969bc74adee98da119bef22 239 SUPERFAMILY SSF46785 7 78 2.54E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1294 02a907511a6a92f67b8368ded935cb4f 315 SUPERFAMILY SSF88713 11 311 3.46E-88 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 dqs_1294 02a907511a6a92f67b8368ded935cb4f 315 Gene3D G3DSA:3.20.20.370 6 315 7.0E-106 T 11-10-2018 dqs_1294 02a907511a6a92f67b8368ded935cb4f 315 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 11 311 1.6E-153 T 11-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 dqs_1294 02a907511a6a92f67b8368ded935cb4f 315 Pfam PF01522 Polysaccharide deacetylase 82 168 1.3E-8 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 SMART SM00304 177 229 2.8E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 391 4.6E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 416 4.6E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 435 4.6E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 377 4.6E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 SMART SM00387 328 437 2.6E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 SMART SM00388 230 289 1.7E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 SUPERFAMILY SSF47384 215 286 9.81E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 Pfam PF00672 HAMP domain 177 225 4.5E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 Gene3D G3DSA:1.10.287.130 181 290 3.1E-20 T 11-10-2018 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 286 2.2E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 SUPERFAMILY SSF55874 282 435 1.83E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 Gene3D G3DSA:3.30.565.10 292 437 1.1E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0063 02eecbb6744393ea17ea7680595e9b94 437 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 436 1.5E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3002 4e5f463d1c768423611fbaad28d2617b 240 Gene3D G3DSA:2.40.10.120 19 235 6.5E-53 T 11-10-2018 dqs_3002 4e5f463d1c768423611fbaad28d2617b 240 Pfam PF13365 Trypsin-like peptidase domain 67 206 1.1E-26 T 11-10-2018 dqs_3002 4e5f463d1c768423611fbaad28d2617b 240 SUPERFAMILY SSF50494 30 231 5.59E-48 T 11-10-2018 IPR009003 Peptidase S1, PA clan dqs_3002 4e5f463d1c768423611fbaad28d2617b 240 PRINTS PR00834 HtrA/DegQ protease family signature 177 194 1.8E-30 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3002 4e5f463d1c768423611fbaad28d2617b 240 PRINTS PR00834 HtrA/DegQ protease family signature 76 88 1.8E-30 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3002 4e5f463d1c768423611fbaad28d2617b 240 PRINTS PR00834 HtrA/DegQ protease family signature 97 117 1.8E-30 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3002 4e5f463d1c768423611fbaad28d2617b 240 PRINTS PR00834 HtrA/DegQ protease family signature 139 163 1.8E-30 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3002 4e5f463d1c768423611fbaad28d2617b 240 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 1.8E-30 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 9 199 3.3E-82 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 Gene3D G3DSA:3.90.870.10 1 206 2.6E-87 T 11-10-2018 dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 Pfam PF00925 GTP cyclohydrolase II 209 360 2.5E-29 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 PIRSF PIRSF001259 2 362 1.2E-108 T 11-10-2018 dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 2 204 37.382 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 SUPERFAMILY SSF142695 205 361 8.24E-41 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 SUPERFAMILY SSF55821 4 203 4.35E-85 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 Gene3D G3DSA:3.40.50.10990 207 362 1.5E-20 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 dqs_0332 c43f4bae7cc2632d32af85a6a016e020 363 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 5 200 1.3E-72 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_4038 617772a1a72a7c6a6f532e38f1bd52a5 353 Pfam PF06812 ImpA, N-terminal, type VI secretion system 11 139 1.6E-37 T 11-10-2018 IPR010657 ImpA, N-terminal dqs_4038 617772a1a72a7c6a6f532e38f1bd52a5 353 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 5 344 1.1E-64 T 11-10-2018 IPR017740 Type VI secretion system-associated, ImpA dqs_0777 599882539cf5071caa3c396175aca006 300 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 216 281 6.0E-13 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 dqs_0777 599882539cf5071caa3c396175aca006 300 SUPERFAMILY SSF74653 188 294 1.83E-21 T 11-10-2018 dqs_0777 599882539cf5071caa3c396175aca006 300 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 216 292 5.1E-13 T 11-10-2018 IPR006260 TonB/TolA, C-terminal dqs_1921 bf50bda470ed522e44ad3af5719709c4 472 PIRSF PIRSF006446 3 454 2.0E-173 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 dqs_1921 bf50bda470ed522e44ad3af5719709c4 472 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 432 4.1E-155 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 PRINTS PR00095 Anthranilate synthase component I signature 323 337 2.3E-10 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 PRINTS PR00095 Anthranilate synthase component I signature 243 256 2.3E-10 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 PRINTS PR00095 Anthranilate synthase component I signature 229 242 2.3E-10 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 Pfam PF00425 chorismate binding enzyme 121 392 8.5E-79 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 Gene3D G3DSA:3.30.470.10 394 480 6.7E-21 T 11-10-2018 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 SUPERFAMILY SSF56322 21 397 1.15E-95 T 11-10-2018 IPR005801 ADC synthase GO:0009058 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 Gene3D G3DSA:3.60.120.10 84 393 6.0E-103 T 11-10-2018 IPR005801 ADC synthase GO:0009058 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 Gene3D G3DSA:3.20.10.10 489 613 1.7E-36 T 11-10-2018 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 Pfam PF01063 Amino-transferase class IV 404 612 9.3E-40 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 dqs_0212 4a2c0d313e5b4aa5e1fbe5b8bf8c5b68 617 SUPERFAMILY SSF56752 344 612 1.09E-50 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 dqs_2188 19536caefa9316db38d2620edf363abd 161 SUPERFAMILY SSF54534 5 141 1.96E-30 T 11-10-2018 dqs_2188 19536caefa9316db38d2620edf363abd 161 Gene3D G3DSA:2.40.10.330 72 122 1.1E-49 T 11-10-2018 dqs_2188 19536caefa9316db38d2620edf363abd 161 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 6 77 1.9E-6 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain dqs_2188 19536caefa9316db38d2620edf363abd 161 Gene3D G3DSA:3.10.50.40 5 155 1.1E-49 T 11-10-2018 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 Pfam PF13180 PDZ domain 281 372 7.0E-17 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 45 472 2.8E-150 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 SUPERFAMILY SSF50156 391 475 1.58E-17 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 389 464 1.7E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 Gene3D G3DSA:2.30.42.10 276 383 1.9E-27 T 11-10-2018 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 SUPERFAMILY SSF50156 239 364 3.42E-25 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 Gene3D G3DSA:2.40.10.120 43 274 3.3E-80 T 11-10-2018 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 Pfam PF13365 Trypsin-like peptidase domain 109 242 5.2E-35 T 11-10-2018 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 SMART SM00228 281 363 8.0E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 SMART SM00228 391 467 1.6E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 PRINTS PR00834 HtrA/DegQ protease family signature 118 130 2.2E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 PRINTS PR00834 HtrA/DegQ protease family signature 179 203 2.2E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 PRINTS PR00834 HtrA/DegQ protease family signature 321 333 2.2E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 PRINTS PR00834 HtrA/DegQ protease family signature 213 230 2.2E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 PRINTS PR00834 HtrA/DegQ protease family signature 139 159 2.2E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 PRINTS PR00834 HtrA/DegQ protease family signature 235 252 2.2E-50 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 SUPERFAMILY SSF50494 43 272 1.35E-63 T 11-10-2018 IPR009003 Peptidase S1, PA clan dqs_3819 0660f6a85c41b960d0b9babf295b8d91 477 Gene3D G3DSA:2.30.42.10 394 476 3.5E-19 T 11-10-2018 dqs_2396 1a4280ffd0e95327eafbaaa5ea95e702 217 Gene3D G3DSA:1.10.3720.10 5 215 1.1E-46 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2396 1a4280ffd0e95327eafbaaa5ea95e702 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 108 4.8E-31 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 dqs_2396 1a4280ffd0e95327eafbaaa5ea95e702 217 SUPERFAMILY SSF161098 14 199 8.9E-41 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2396 1a4280ffd0e95327eafbaaa5ea95e702 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 190 3.4E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 Gene3D G3DSA:2.30.42.10 280 384 8.8E-27 T 11-10-2018 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 Pfam PF13365 Trypsin-like peptidase domain 110 246 7.2E-35 T 11-10-2018 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 PRINTS PR00834 HtrA/DegQ protease family signature 140 160 5.3E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 PRINTS PR00834 HtrA/DegQ protease family signature 182 206 5.3E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 PRINTS PR00834 HtrA/DegQ protease family signature 119 131 5.3E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 PRINTS PR00834 HtrA/DegQ protease family signature 217 234 5.3E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 PRINTS PR00834 HtrA/DegQ protease family signature 239 256 5.3E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 PRINTS PR00834 HtrA/DegQ protease family signature 325 337 5.3E-56 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 Pfam PF13180 PDZ domain 287 376 3.7E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 57 383 1.6E-129 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 SUPERFAMILY SSF50156 243 359 1.71E-24 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 SUPERFAMILY SSF50494 55 276 1.15E-66 T 11-10-2018 IPR009003 Peptidase S1, PA clan dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 SMART SM00228 285 367 3.5E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_3475 daf180f2445a57430fe26029f1d46a4e 388 Gene3D G3DSA:2.40.10.120 56 278 1.5E-78 T 11-10-2018 dqs_3630 95f4b86af1db62bdfe0f1d36c0c1db69 161 Pfam PF11749 Protein of unknown function (DUF3305) 6 145 1.6E-48 T 11-10-2018 IPR021736 Protein of unknown function DUF3305 dqs_1143 662e6016b9636d9ff261ae1b9446edc3 104 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 23 86 3.0E-15 T 11-10-2018 dqs_1143 662e6016b9636d9ff261ae1b9446edc3 104 SUPERFAMILY SSF55021 16 89 7.38E-17 T 11-10-2018 dqs_1143 662e6016b9636d9ff261ae1b9446edc3 104 Gene3D G3DSA:3.30.70.260 9 104 4.2E-33 T 11-10-2018 dqs_1143 662e6016b9636d9ff261ae1b9446edc3 104 Pfam PF01842 ACT domain 18 81 4.5E-11 T 11-10-2018 IPR002912 ACT domain dqs_3447 d164041c27f1a1b87a2b6064e4077ce8 448 Gene3D G3DSA:3.50.50.60 17 273 3.5E-22 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3447 d164041c27f1a1b87a2b6064e4077ce8 448 Pfam PF13450 NAD(P)-binding Rossmann-like domain 19 86 5.0E-14 T 11-10-2018 dqs_3447 d164041c27f1a1b87a2b6064e4077ce8 448 SUPERFAMILY SSF51905 16 428 5.83E-48 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3447 d164041c27f1a1b87a2b6064e4077ce8 448 Gene3D G3DSA:3.90.660.10 96 214 3.5E-22 T 11-10-2018 dqs_2916 a5ca5471af1091289ee568cda3f18122 183 SUPERFAMILY SSF89028 7 178 7.85E-61 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 dqs_2916 a5ca5471af1091289ee568cda3f18122 183 Gene3D G3DSA:1.20.1200.10 17 183 5.3E-61 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 dqs_2916 a5ca5471af1091289ee568cda3f18122 183 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 178 2.3E-59 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 dqs_2916 a5ca5471af1091289ee568cda3f18122 183 Pfam PF01923 Cobalamin adenosyltransferase 8 165 2.4E-56 T 11-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 dqs_2916 a5ca5471af1091289ee568cda3f18122 183 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 24 179 1.0E-54 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 dqs_1356 1b6f59c94cc41641583dcb48dc65f8d9 108 Gene3D G3DSA:4.10.940.10 29 107 3.1E-40 T 11-10-2018 IPR036487 Quinohemoprotein amine dehydrogenase, gamma subunit structural domain superfamily dqs_1356 1b6f59c94cc41641583dcb48dc65f8d9 108 Pfam PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit 31 104 3.8E-44 T 11-10-2018 IPR015084 Quinohemoprotein amine dehydrogenase, gamma subunit, structural domain GO:0016638|GO:0055114 dqs_1356 1b6f59c94cc41641583dcb48dc65f8d9 108 SUPERFAMILY SSF69131 29 107 5.1E-41 T 11-10-2018 IPR036487 Quinohemoprotein amine dehydrogenase, gamma subunit structural domain superfamily dqs_1356 1b6f59c94cc41641583dcb48dc65f8d9 108 ProDom PD591508 QUINOHEMOPROTEIN AMINE SUBUNIT DEHYDROGENASE GAMMA 1.4.99.- CATALYTIC QH-AMDH CTQ 3D-STRUCTURE 38 107 6.0E-28 T 11-10-2018 IPR015084 Quinohemoprotein amine dehydrogenase, gamma subunit, structural domain GO:0016638|GO:0055114 dqs_1627 1da877d08287abae307fb88b71ae300d 491 Gene3D G3DSA:3.30.565.10 357 484 1.2E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1627 1da877d08287abae307fb88b71ae300d 491 Pfam PF07730 Histidine kinase 286 352 7.6E-12 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 dqs_1627 1da877d08287abae307fb88b71ae300d 491 SMART SM00304 218 270 8.5E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1627 1da877d08287abae307fb88b71ae300d 491 SUPERFAMILY SSF55874 355 483 2.58E-14 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1627 1da877d08287abae307fb88b71ae300d 491 Gene3D G3DSA:1.10.287.130 215 345 5.7E-7 T 11-10-2018 dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 SMART SM00967 12 88 3.2E-15 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 11 249 1.2E-71 T 11-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 Gene3D G3DSA:3.30.1330.30 2 83 4.5E-21 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 Gene3D G3DSA:3.40.1280.10 84 250 2.4E-59 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 SUPERFAMILY SSF55315 6 83 3.53E-18 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 Pfam PF00588 SpoU rRNA Methylase family 103 243 3.4E-39 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 10 250 43.435 T 11-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 SUPERFAMILY SSF75217 88 250 1.96E-48 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases dqs_1014 b7cf9ebc718d7d03f8301342eb37c043 254 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 12 84 1.5E-14 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 SMART SM00883 2 94 2.6E-55 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 26.172 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 Gene3D G3DSA:2.30.33.40 1 95 5.6E-36 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 PRINTS PR00297 10kDa chaperonin signature 81 94 1.1E-32 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 PRINTS PR00297 10kDa chaperonin signature 60 72 1.1E-32 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 PRINTS PR00297 10kDa chaperonin signature 3 18 1.1E-32 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 PRINTS PR00297 10kDa chaperonin signature 25 46 1.1E-32 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 SUPERFAMILY SSF50129 1 95 6.83E-33 T 11-10-2018 IPR011032 GroES-like superfamily dqs_2495 f5ef5e35718262d5487a4aea7f6e5594 95 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 3.8E-34 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_1114 1f105e8889faa5d241eae05b9e69b205 249 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 13 240 9.3E-32 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 dqs_1114 1f105e8889faa5d241eae05b9e69b205 249 SUPERFAMILY SSF51695 7 243 1.38E-58 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 dqs_1114 1f105e8889faa5d241eae05b9e69b205 249 Gene3D G3DSA:3.20.20.190 5 244 9.5E-67 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 dqs_1743 153a878178bb517b2323062d64389029 241 Gene3D G3DSA:3.40.1010.10 4 123 4.0E-37 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 dqs_1743 153a878178bb517b2323062d64389029 241 Gene3D G3DSA:3.30.950.10 124 240 1.9E-44 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 dqs_1743 153a878178bb517b2323062d64389029 241 SUPERFAMILY SSF53790 5 235 1.11E-63 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 dqs_1743 153a878178bb517b2323062d64389029 241 PIRSF PIRSF005917 1 241 2.8E-47 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 dqs_0671 8e67f8f5734bb9dbffd63fcd557fc329 234 Pfam PF03591 AzlC protein 18 158 1.2E-31 T 11-10-2018 IPR011606 Branched-chain amino acid transport, permease dqs_2198 8350d3a980306adf794a668f42fb6182 794 Gene3D G3DSA:3.30.230.10 576 763 4.6E-79 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_2198 8350d3a980306adf794a668f42fb6182 794 Gene3D G3DSA:2.30.130.40 1 107 1.1E-35 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 SMART SM00464 2 194 1.4E-77 T 11-10-2018 IPR003111 Lon, substrate-binding domain dqs_2198 8350d3a980306adf794a668f42fb6182 794 SUPERFAMILY SSF54211 586 761 8.72E-59 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_2198 8350d3a980306adf794a668f42fb6182 794 SUPERFAMILY SSF52540 304 577 6.74E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2198 8350d3a980306adf794a668f42fb6182 794 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 561 763 3.5E-94 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 dqs_2198 8350d3a980306adf794a668f42fb6182 794 SUPERFAMILY SSF88697 1 193 1.96E-53 T 11-10-2018 IPR015947 PUA-like superfamily dqs_2198 8350d3a980306adf794a668f42fb6182 794 TIGRFAM TIGR00763 lon: endopeptidase La 4 762 7.5E-298 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 dqs_2198 8350d3a980306adf794a668f42fb6182 794 PIRSF PIRSF001174 1 766 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 dqs_2198 8350d3a980306adf794a668f42fb6182 794 Gene3D G3DSA:1.10.8.60 482 575 3.9E-33 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 SMART SM00382 339 483 7.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2198 8350d3a980306adf794a668f42fb6182 794 Hamap MF_01973 Lon protease [lon]. 3 763 71.277 T 11-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 dqs_2198 8350d3a980306adf794a668f42fb6182 794 Gene3D G3DSA:3.40.50.300 305 481 2.8E-62 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 Gene3D G3DSA:1.20.58.1480 112 237 3.4E-45 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 347 366 1.4E-53 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 717 735 1.4E-53 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 694 713 1.4E-53 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 586 602 1.4E-53 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 664 683 1.4E-53 T 11-10-2018 dqs_2198 8350d3a980306adf794a668f42fb6182 794 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 667 675 - T 11-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 dqs_2198 8350d3a980306adf794a668f42fb6182 794 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 2 192 4.3E-46 T 11-10-2018 IPR003111 Lon, substrate-binding domain dqs_2198 8350d3a980306adf794a668f42fb6182 794 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 343 479 4.6E-17 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_1444 a12711849dadb80357c26c4e816cd96f 594 Pfam PF01935 Domain of unknown function DUF87 130 290 2.3E-19 T 11-10-2018 IPR002789 Helicase HerA, central domain dqs_1444 a12711849dadb80357c26c4e816cd96f 594 SUPERFAMILY SSF52540 125 568 1.51E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1444 a12711849dadb80357c26c4e816cd96f 594 Gene3D G3DSA:3.40.50.300 380 581 1.3E-41 T 11-10-2018 dqs_1444 a12711849dadb80357c26c4e816cd96f 594 Gene3D G3DSA:3.40.50.300 113 270 2.0E-21 T 11-10-2018 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 Pfam PF00027 Cyclic nucleotide-binding domain 36 123 7.9E-27 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 85 102 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 192 207 7.4E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 176 192 7.4E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 SMART SM00419 169 218 6.4E-12 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 Gene3D G3DSA:1.10.10.10 154 217 1.1E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 Pfam PF13545 Crp-like helix-turn-helix domain 155 219 7.6E-16 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 PRINTS PR00103 cAMP-dependent protein kinase signature 53 67 4.2E-5 T 11-10-2018 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 PRINTS PR00103 cAMP-dependent protein kinase signature 83 92 4.2E-5 T 11-10-2018 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 PRINTS PR00103 cAMP-dependent protein kinase signature 95 106 4.2E-5 T 11-10-2018 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 PRINTS PR00103 cAMP-dependent protein kinase signature 38 52 4.2E-5 T 11-10-2018 dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 Gene3D G3DSA:2.60.120.10 8 153 3.2E-41 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 SUPERFAMILY SSF51206 12 150 1.26E-38 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 SUPERFAMILY SSF46785 152 219 9.52E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1486 cac8332acca52574da7480f8c1c83ee3 223 SMART SM00100 17 135 1.4E-28 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_3060 7865f8fb2250e58ae9787b31d6246734 479 Pfam PF14559 Tetratricopeptide repeat 341 406 4.4E-6 T 11-10-2018 dqs_3060 7865f8fb2250e58ae9787b31d6246734 479 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 3 473 31.444 T 11-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 dqs_3060 7865f8fb2250e58ae9787b31d6246734 479 Gene3D G3DSA:3.30.2010.10 57 141 1.8E-6 T 11-10-2018 dqs_3060 7865f8fb2250e58ae9787b31d6246734 479 Pfam PF01435 Peptidase family M48 62 250 1.1E-37 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 dqs_3060 7865f8fb2250e58ae9787b31d6246734 479 Gene3D G3DSA:1.25.40.10 249 472 5.8E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3060 7865f8fb2250e58ae9787b31d6246734 479 Pfam PF13432 Tetratricopeptide repeat 267 330 5.5E-7 T 11-10-2018 dqs_3060 7865f8fb2250e58ae9787b31d6246734 479 SUPERFAMILY SSF48452 260 444 2.58E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 158 3.4E-58 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 4 22 1.2E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 87 103 1.2E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 114 136 1.2E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 51 75 1.2E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 22 43 1.2E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 Gene3D G3DSA:3.40.50.620 4 163 5.7E-55 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_0837 6e12d445576f29a30525964c4cc86e92 163 Pfam PF01467 Cytidylyltransferase-like 7 135 1.4E-19 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 4 160 35.424 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 SUPERFAMILY SSF52374 5 157 3.84E-43 T 11-10-2018 dqs_0837 6e12d445576f29a30525964c4cc86e92 163 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 61 1.8E-15 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 dqs_2163 c2af825dca56056a7083850ba314a0cb 320 SUPERFAMILY SSF53335 34 304 2.86E-50 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2163 c2af825dca56056a7083850ba314a0cb 320 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 31 314 1.3E-119 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 dqs_2163 c2af825dca56056a7083850ba314a0cb 320 Gene3D G3DSA:3.40.50.150 122 304 3.6E-48 T 11-10-2018 dqs_2163 c2af825dca56056a7083850ba314a0cb 320 PIRSF PIRSF037167 18 320 3.6E-122 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 dqs_2163 c2af825dca56056a7083850ba314a0cb 320 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 24 320 48.7 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 dqs_2163 c2af825dca56056a7083850ba314a0cb 320 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 34 316 2.8E-64 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 dqs_2163 c2af825dca56056a7083850ba314a0cb 320 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 224 230 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 dqs_2163 c2af825dca56056a7083850ba314a0cb 320 Pfam PF05175 Methyltransferase small domain 154 235 6.6E-16 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 dqs_3399 07e3e96e2429a2769dd0b4220692099c 376 Pfam PF13439 Glycosyltransferase Family 4 3 170 8.6E-15 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3399 07e3e96e2429a2769dd0b4220692099c 376 Pfam PF00534 Glycosyl transferases group 1 180 342 3.3E-30 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_3399 07e3e96e2429a2769dd0b4220692099c 376 Gene3D G3DSA:3.40.50.2000 167 350 1.0E-59 T 11-10-2018 dqs_3399 07e3e96e2429a2769dd0b4220692099c 376 Gene3D G3DSA:3.40.50.2000 55 166 1.0E-59 T 11-10-2018 dqs_3399 07e3e96e2429a2769dd0b4220692099c 376 SUPERFAMILY SSF53756 3 364 2.47E-73 T 11-10-2018 dqs_2708 909055569ff4f501320456d6419a2126 316 Gene3D G3DSA:1.20.1530.20 170 314 4.2E-8 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily dqs_2708 909055569ff4f501320456d6419a2126 316 Pfam PF03547 Membrane transport protein 17 149 4.7E-8 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 dqs_2708 909055569ff4f501320456d6419a2126 316 Pfam PF03547 Membrane transport protein 166 305 4.0E-14 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 dqs_2174 a2df718be4919c3dbfe15776a2cdedad 251 Gene3D G3DSA:2.160.10.10 67 189 4.3E-37 T 11-10-2018 dqs_2174 a2df718be4919c3dbfe15776a2cdedad 251 SUPERFAMILY SSF51161 4 170 2.77E-56 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_2174 a2df718be4919c3dbfe15776a2cdedad 251 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 167 4.5E-73 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 dqs_2174 a2df718be4919c3dbfe15776a2cdedad 251 Gene3D G3DSA:1.10.3130.10 1 66 4.1E-22 T 11-10-2018 dqs_2174 a2df718be4919c3dbfe15776a2cdedad 251 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 107 3.7E-5 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2174 a2df718be4919c3dbfe15776a2cdedad 251 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 151 5.1E-7 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 229 470 5.5E-58 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 Gene3D G3DSA:3.40.50.10260 12 213 9.2E-56 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 26 210 1.5E-37 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 Gene3D G3DSA:3.40.1190.20 220 492 3.2E-76 T 11-10-2018 IPR029056 Ribokinase-like dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 SUPERFAMILY SSF53613 221 491 1.29E-67 T 11-10-2018 IPR029056 Ribokinase-like dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 429 439 - T 11-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 7 210 21.689 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 Pfam PF01256 Carbohydrate kinase 247 470 3.5E-51 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 223 491 21.406 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 Pfam PF03853 YjeF-related protein N-terminus 28 189 1.4E-42 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 SUPERFAMILY SSF64153 8 244 8.11E-55 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 dqs_2205 30fa5a40d6c1e04d708f556a0f374993 509 PIRSF PIRSF017184 12 490 1.8E-110 T 11-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 SUPERFAMILY SSF158472 202 252 3.27E-7 T 11-10-2018 dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 268 431 1.5E-46 T 11-10-2018 IPR000160 GGDEF domain dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 Gene3D G3DSA:1.20.1480.50 165 261 5.1E-11 T 11-10-2018 dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 SUPERFAMILY SSF141868 456 688 1.22E-29 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 Pfam PF00672 HAMP domain 202 250 3.2E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 SMART SM00267 261 433 2.5E-62 T 11-10-2018 IPR000160 GGDEF domain dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 SUPERFAMILY SSF55073 277 434 2.59E-50 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 Gene3D G3DSA:3.30.70.270 266 436 5.2E-60 T 11-10-2018 dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 40 171 9.9E-13 T 11-10-2018 IPR019247 Histidine kinase BarA, N-terminal dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 Pfam PF00563 EAL domain 460 683 4.3E-27 T 11-10-2018 IPR001633 EAL domain dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 Pfam PF00990 Diguanylate cyclase, GGDEF domain 272 429 1.7E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 SMART SM00304 202 255 6.3E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 SMART SM00052 440 690 2.5E-9 T 11-10-2018 IPR001633 EAL domain dqs_2034 61be4006fd709d517d7fcc9e00ac43a2 690 Gene3D G3DSA:3.20.20.450 454 690 7.9E-34 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1298 07386d3eca1212df3359bd8f32714809 319 Pfam PF00561 alpha/beta hydrolase fold 38 149 7.4E-24 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1298 07386d3eca1212df3359bd8f32714809 319 PIRSF PIRSF006431 2 312 2.2E-91 T 11-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 dqs_1298 07386d3eca1212df3359bd8f32714809 319 SUPERFAMILY SSF53474 11 298 1.08E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1298 07386d3eca1212df3359bd8f32714809 319 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 65 76 7.5E-14 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 dqs_1298 07386d3eca1212df3359bd8f32714809 319 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 39 47 7.5E-14 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 dqs_1298 07386d3eca1212df3359bd8f32714809 319 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 108 122 7.5E-14 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 dqs_1298 07386d3eca1212df3359bd8f32714809 319 Gene3D G3DSA:3.40.50.1820 7 311 1.5E-78 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1699 3729f633f3b65df2b2cfc131f62b7b9e 148 ProSitePatterns PS01317 SsrA-binding protein. 21 33 - T 11-10-2018 IPR020081 SsrA-binding protein, conserved site dqs_1699 3729f633f3b65df2b2cfc131f62b7b9e 148 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 3 121 1.0E-55 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 dqs_1699 3729f633f3b65df2b2cfc131f62b7b9e 148 SUPERFAMILY SSF74982 3 127 6.93E-49 T 11-10-2018 IPR023620 Small protein B dqs_1699 3729f633f3b65df2b2cfc131f62b7b9e 148 TIGRFAM TIGR00086 smpB: SsrA-binding protein 3 144 2.5E-54 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 dqs_1699 3729f633f3b65df2b2cfc131f62b7b9e 148 Gene3D G3DSA:2.40.280.10 1 124 2.1E-46 T 11-10-2018 IPR023620 Small protein B dqs_1699 3729f633f3b65df2b2cfc131f62b7b9e 148 Pfam PF01668 SmpB protein 3 145 2.0E-58 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 dqs_1699 3729f633f3b65df2b2cfc131f62b7b9e 148 Hamap MF_00023 SsrA-binding protein [smpB]. 1 148 71.352 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 dqs_3581 d0663b476c33dff48688010481795af3 639 Pfam PF00512 His Kinase A (phospho-acceptor) domain 279 344 3.0E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3581 d0663b476c33dff48688010481795af3 639 Gene3D G3DSA:1.10.287.130 245 342 3.8E-20 T 11-10-2018 dqs_3581 d0663b476c33dff48688010481795af3 639 Gene3D G3DSA:3.40.50.2300 518 639 1.5E-19 T 11-10-2018 dqs_3581 d0663b476c33dff48688010481795af3 639 Gene3D G3DSA:3.30.565.10 343 499 2.8E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3581 d0663b476c33dff48688010481795af3 639 SUPERFAMILY SSF55874 333 501 1.06E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3581 d0663b476c33dff48688010481795af3 639 SUPERFAMILY SSF52172 520 637 1.71E-21 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3581 d0663b476c33dff48688010481795af3 639 SMART SM00387 388 499 1.3E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3581 d0663b476c33dff48688010481795af3 639 SMART SM00388 279 344 3.3E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3581 d0663b476c33dff48688010481795af3 639 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 33 170 4.9E-12 T 11-10-2018 IPR019247 Histidine kinase BarA, N-terminal dqs_3581 d0663b476c33dff48688010481795af3 639 Pfam PF00072 Response regulator receiver domain 521 632 1.7E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3581 d0663b476c33dff48688010481795af3 639 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 498 7.3E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3581 d0663b476c33dff48688010481795af3 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 496 2.5E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3581 d0663b476c33dff48688010481795af3 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 452 2.5E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3581 d0663b476c33dff48688010481795af3 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 438 2.5E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3581 d0663b476c33dff48688010481795af3 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 477 2.5E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3581 d0663b476c33dff48688010481795af3 639 SUPERFAMILY SSF47384 265 344 1.51E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3581 d0663b476c33dff48688010481795af3 639 SMART SM00304 201 253 1.2E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3581 d0663b476c33dff48688010481795af3 639 SMART SM00448 519 632 9.0E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1824 59ad24fe251cc48fdc7164a9e73ef7ab 217 Pfam PF12118 SprA-related family 58 170 5.1E-34 T 11-10-2018 IPR021973 SprA-related family dqs_0129 8c43416ea039e46c55b2548a3c9af4b1 404 Gene3D G3DSA:3.40.50.2300 151 368 2.7E-107 T 11-10-2018 dqs_0129 8c43416ea039e46c55b2548a3c9af4b1 404 SUPERFAMILY SSF53822 30 402 1.27E-88 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_0129 8c43416ea039e46c55b2548a3c9af4b1 404 Gene3D G3DSA:3.40.50.2300 55 360 2.7E-107 T 11-10-2018 dqs_0129 8c43416ea039e46c55b2548a3c9af4b1 404 Pfam PF13458 Periplasmic binding protein 30 367 1.3E-86 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_0882 5329caa0737a52dadd84cc39b2015ad6 298 Gene3D G3DSA:3.40.50.300 1 237 2.2E-65 T 11-10-2018 dqs_0882 5329caa0737a52dadd84cc39b2015ad6 298 SUPERFAMILY SSF52540 3 229 1.84E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0882 5329caa0737a52dadd84cc39b2015ad6 298 Pfam PF00005 ABC transporter 23 163 1.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0882 5329caa0737a52dadd84cc39b2015ad6 298 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0882 5329caa0737a52dadd84cc39b2015ad6 298 SMART SM00382 30 219 9.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SUPERFAMILY SSF47226 12 132 4.27E-15 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Gene3D G3DSA:2.30.30.40 1747 1874 8.7E-30 T 11-10-2018 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SUPERFAMILY SSF47226 442 548 2.5E-6 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SUPERFAMILY SSF47226 1133 1249 6.93E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Gene3D G3DSA:2.40.50.180 1770 1834 8.7E-30 T 11-10-2018 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SUPERFAMILY SSF55874 1563 1745 3.01E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SUPERFAMILY SSF47226 664 784 8.64E-26 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Gene3D G3DSA:3.30.565.10 1560 1746 1.2E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1651 1665 2.4E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1707 1725 2.4E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1731 1744 2.4E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SMART SM00073 665 762 2.6E-10 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SMART SM00073 1288 1386 7.0E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SMART SM00073 1131 1227 0.032 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Gene3D G3DSA:3.40.50.12740 1905 2028 7.9E-37 T 11-10-2018 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Gene3D G3DSA:1.20.120.160 1289 1414 1.8E-22 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Gene3D G3DSA:1.20.120.160 658 790 6.1E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Gene3D G3DSA:1.20.120.160 1126 1258 6.1E-12 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Pfam PF01584 CheW-like domain 1751 1880 6.7E-17 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Pfam PF01627 Hpt domain 1134 1228 6.4E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Pfam PF01627 Hpt domain 1291 1384 2.6E-12 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Pfam PF01627 Hpt domain 667 753 1.4E-14 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1610 1746 1.7E-10 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SMART SM00387 1606 1747 8.8E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SUPERFAMILY SSF47226 1289 1400 7.07E-24 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SMART SM00448 1905 2018 2.6E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SMART SM00260 1739 1879 1.1E-15 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SMART SM01231 1424 1561 1.1E-8 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SUPERFAMILY SSF52172 1905 2021 7.26E-36 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 Pfam PF00072 Response regulator receiver domain 1907 2018 2.0E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3600 46914ea0409cd8e68a8003654f9791ad 2028 SUPERFAMILY SSF50341 1746 1878 9.16E-23 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 885 202.979 T 11-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 SMART SM00863 664 706 2.4E-18 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 SUPERFAMILY SSF55186 563 721 3.4E-47 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Gene3D G3DSA:3.30.930.10 1 248 6.5E-122 T 11-10-2018 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 SUPERFAMILY SSF55681 2 251 2.49E-109 T 11-10-2018 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Gene3D G3DSA:3.30.980.10 573 707 4.7E-50 T 11-10-2018 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Gene3D G3DSA:2.40.30.130 488 563 1.5E-8 T 11-10-2018 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Pfam PF02272 DHHA1 domain 745 881 1.4E-28 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 664 706 5.6E-16 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Gene3D G3DSA:3.10.310.40 774 883 1.7E-33 T 11-10-2018 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Pfam PF01411 tRNA synthetases class II (A) 5 565 1.7E-220 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 864 0.0 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 8.5E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 232 245 8.5E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 314 327 8.5E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 205 216 8.5E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 290 306 8.5E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 SUPERFAMILY SSF101353 252 461 4.32E-59 T 11-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 dqs_2915 f20f33822d6a2aee085f210b087a460f 885 SUPERFAMILY SSF50447 465 563 2.3E-16 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_2915 f20f33822d6a2aee085f210b087a460f 885 Gene3D G3DSA:3.30.54.20 635 687 4.7E-50 T 11-10-2018 dqs_1814 82254149eae3426dad1fa55a1347b316 367 SUPERFAMILY SSF52821 32 145 1.17E-22 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_1814 82254149eae3426dad1fa55a1347b316 367 Pfam PF00581 Rhodanese-like domain 28 139 1.5E-9 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_1814 82254149eae3426dad1fa55a1347b316 367 ProSitePatterns PS00380 Rhodanese signature 1. 41 52 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 dqs_1814 82254149eae3426dad1fa55a1347b316 367 Gene3D G3DSA:3.40.250.10 18 146 1.3E-37 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_1814 82254149eae3426dad1fa55a1347b316 367 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 29 331 1.8E-110 T 11-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 dqs_1814 82254149eae3426dad1fa55a1347b316 367 SMART SM00450 18 145 1.3E-10 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_0248 ef4b48466de990e3563be3867aff4ed4 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 15 134 3.2E-21 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 dqs_0322 45f7a23bdd22cf9c6b9025caec68cd43 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 4.6E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0322 45f7a23bdd22cf9c6b9025caec68cd43 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 4.6E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0322 45f7a23bdd22cf9c6b9025caec68cd43 214 Gene3D G3DSA:1.10.357.10 55 198 4.6E-29 T 11-10-2018 dqs_0322 45f7a23bdd22cf9c6b9025caec68cd43 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 8.5E-17 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0322 45f7a23bdd22cf9c6b9025caec68cd43 214 Gene3D G3DSA:1.10.10.60 1 52 1.6E-19 T 11-10-2018 dqs_0322 45f7a23bdd22cf9c6b9025caec68cd43 214 SUPERFAMILY SSF48498 85 194 2.45E-10 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_0322 45f7a23bdd22cf9c6b9025caec68cd43 214 SUPERFAMILY SSF46689 6 84 4.72E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2627 df04321e96aef7d6cfedce4e9e312c8d 301 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 17 245 4.3E-91 T 11-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 dqs_2627 df04321e96aef7d6cfedce4e9e312c8d 301 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2627 df04321e96aef7d6cfedce4e9e312c8d 301 Pfam PF00005 ABC transporter 17 157 8.0E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2627 df04321e96aef7d6cfedce4e9e312c8d 301 SUPERFAMILY SSF52540 2 214 7.06E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2627 df04321e96aef7d6cfedce4e9e312c8d 301 Gene3D G3DSA:3.40.50.300 1 237 3.9E-64 T 11-10-2018 dqs_2627 df04321e96aef7d6cfedce4e9e312c8d 301 SMART SM00382 25 207 2.7E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2715 4297a083b2d3001f0f002f4207d4c644 451 Gene3D G3DSA:2.40.30.170 211 409 2.4E-18 T 11-10-2018 dqs_2715 4297a083b2d3001f0f002f4207d4c644 451 Pfam PF13437 HlyD family secretion protein 315 410 1.9E-12 T 11-10-2018 dqs_2715 4297a083b2d3001f0f002f4207d4c644 451 Gene3D G3DSA:1.10.287.470 251 314 2.4E-18 T 11-10-2018 dqs_2715 4297a083b2d3001f0f002f4207d4c644 451 Gene3D G3DSA:2.40.50.100 217 351 2.4E-18 T 11-10-2018 dqs_2715 4297a083b2d3001f0f002f4207d4c644 451 SUPERFAMILY SSF111369 207 387 1.03E-10 T 11-10-2018 dqs_0223 9cdff37c10e25e7a44361396168c309c 398 Pfam PF01266 FAD dependent oxidoreductase 20 373 2.6E-54 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_0223 9cdff37c10e25e7a44361396168c309c 398 SUPERFAMILY SSF51905 19 393 7.12E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0223 9cdff37c10e25e7a44361396168c309c 398 Gene3D G3DSA:3.50.50.60 20 380 6.0E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0223 9cdff37c10e25e7a44361396168c309c 398 Gene3D G3DSA:3.30.9.10 99 336 6.0E-85 T 11-10-2018 dqs_0433 877af35a91e46a851ad0ce76e0683d61 447 Pfam PF13466 STAS domain 362 438 3.2E-8 T 11-10-2018 IPR002645 STAS domain dqs_0433 877af35a91e46a851ad0ce76e0683d61 447 SUPERFAMILY SSF52091 207 277 5.69E-5 T 11-10-2018 IPR036513 STAS domain superfamily dqs_0433 877af35a91e46a851ad0ce76e0683d61 447 Gene3D G3DSA:3.30.750.24 203 285 6.7E-8 T 11-10-2018 IPR036513 STAS domain superfamily dqs_0433 877af35a91e46a851ad0ce76e0683d61 447 Gene3D G3DSA:3.30.750.24 360 446 8.3E-8 T 11-10-2018 IPR036513 STAS domain superfamily dqs_0433 877af35a91e46a851ad0ce76e0683d61 447 SUPERFAMILY SSF52091 359 441 2.35E-9 T 11-10-2018 IPR036513 STAS domain superfamily dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 5.2E-139 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 5 468 1.3E-201 T 11-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 Gene3D G3DSA:3.30.590.10 105 457 7.5E-149 T 11-10-2018 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 11-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 SUPERFAMILY SSF55931 102 468 1.37E-139 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 SUPERFAMILY SSF54368 3 99 1.44E-34 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 11-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 6.4E-29 T 11-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 Gene3D G3DSA:3.10.20.70 2 104 2.5E-36 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_0812 45b51614ea351ef250db3300f8ed1c68 469 SMART SM01230 102 379 1.5E-147 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 SMART SM00382 335 536 8.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 SMART SM00382 1 184 5.9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 Pfam PF00005 ABC transporter 327 479 3.0E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 ProSitePatterns PS00211 ABC transporters family signature. 107 121 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 Gene3D G3DSA:3.40.50.300 297 633 1.2E-93 T 11-10-2018 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 Gene3D G3DSA:3.40.50.300 1 280 4.3E-75 T 11-10-2018 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 185 269 4.4E-23 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 528 629 7.0E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 186 250 6.1E-16 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 530 610 5.4E-15 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 SUPERFAMILY SSF52540 299 549 8.5E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 SUPERFAMILY SSF52540 2 260 2.66E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 ProSitePatterns PS00211 ABC transporters family signature. 451 465 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2187 52801ddb1d6ce9358fd1097d29f02836 633 Pfam PF00005 ABC transporter 17 134 1.8E-13 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1153 8fb7a9cb91d50c0bef2950888c33d62a 264 Gene3D G3DSA:3.30.70.660 105 242 3.0E-46 T 11-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 dqs_1153 8fb7a9cb91d50c0bef2950888c33d62a 264 Gene3D G3DSA:3.30.70.580 1 104 4.4E-36 T 11-10-2018 dqs_1153 8fb7a9cb91d50c0bef2950888c33d62a 264 Pfam PF01416 tRNA pseudouridine synthase 142 244 1.9E-27 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1153 8fb7a9cb91d50c0bef2950888c33d62a 264 Pfam PF01416 tRNA pseudouridine synthase 8 102 1.4E-7 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1153 8fb7a9cb91d50c0bef2950888c33d62a 264 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 243 33.209 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1153 8fb7a9cb91d50c0bef2950888c33d62a 264 PIRSF PIRSF001430 1 253 4.2E-73 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1153 8fb7a9cb91d50c0bef2950888c33d62a 264 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 3 238 8.1E-63 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1153 8fb7a9cb91d50c0bef2950888c33d62a 264 SUPERFAMILY SSF55120 2 250 1.87E-86 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2104 abc08762ca59431b5cf410d0c6bf62dd 341 SMART SM00342 252 338 2.3E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2104 abc08762ca59431b5cf410d0c6bf62dd 341 Pfam PF14525 AraC-binding-like domain 36 215 1.7E-43 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like dqs_2104 abc08762ca59431b5cf410d0c6bf62dd 341 Gene3D G3DSA:1.10.10.60 236 341 1.2E-35 T 11-10-2018 dqs_2104 abc08762ca59431b5cf410d0c6bf62dd 341 Pfam PF12833 Helix-turn-helix domain 258 340 1.6E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2104 abc08762ca59431b5cf410d0c6bf62dd 341 SUPERFAMILY SSF46689 237 285 4.26E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2104 abc08762ca59431b5cf410d0c6bf62dd 341 SUPERFAMILY SSF46689 289 337 1.16E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1696 df8cc8bdadbee5aa014a07173d1bad11 470 Gene3D G3DSA:1.10.3720.10 236 466 4.5E-21 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1696 df8cc8bdadbee5aa014a07173d1bad11 470 SUPERFAMILY SSF161098 249 449 4.19E-18 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1696 df8cc8bdadbee5aa014a07173d1bad11 470 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 267 470 2.1E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_2819 c22013b26597d51ba0b2b40f321d8040 159 SUPERFAMILY SSF54593 4 157 1.85E-48 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2819 c22013b26597d51ba0b2b40f321d8040 159 Gene3D G3DSA:3.10.180.70 1 159 3.0E-61 T 11-10-2018 dqs_2819 c22013b26597d51ba0b2b40f321d8040 159 PIRSF PIRSF021700 1 159 1.9E-66 T 11-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase dqs_2819 c22013b26597d51ba0b2b40f321d8040 159 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 119 5.7E-45 T 11-10-2018 IPR028973 PhnB-like dqs_3378 006006115d0f9927766f3d53c8416cb9 121 Pfam PF00545 ribonuclease 35 115 1.3E-29 T 11-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 dqs_3378 006006115d0f9927766f3d53c8416cb9 121 SUPERFAMILY SSF53933 31 119 6.52E-36 T 11-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 dqs_3378 006006115d0f9927766f3d53c8416cb9 121 Gene3D G3DSA:3.10.450.30 24 120 1.5E-37 T 11-10-2018 dqs_2194 77dda4a85a7e331014944c859f577d4f 603 PIRSF PIRSF016493 1 592 9.2E-218 T 11-10-2018 IPR024191 Peptidase M61 dqs_2194 77dda4a85a7e331014944c859f577d4f 603 Gene3D G3DSA:1.10.390.60 186 461 1.2E-106 T 11-10-2018 dqs_2194 77dda4a85a7e331014944c859f577d4f 603 Pfam PF05299 M61 glycyl aminopeptidase 279 395 5.5E-47 T 11-10-2018 IPR007963 Peptidase M61, catalytic domain dqs_2194 77dda4a85a7e331014944c859f577d4f 603 Gene3D G3DSA:2.60.40.3650 1 184 9.8E-63 T 11-10-2018 dqs_2194 77dda4a85a7e331014944c859f577d4f 603 Pfam PF13180 PDZ domain 485 563 8.2E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2194 77dda4a85a7e331014944c859f577d4f 603 Gene3D G3DSA:2.30.42.10 486 600 4.0E-20 T 11-10-2018 dqs_2194 77dda4a85a7e331014944c859f577d4f 603 SUPERFAMILY SSF50156 480 571 4.07E-12 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_2194 77dda4a85a7e331014944c859f577d4f 603 SMART SM00228 485 554 1.1E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2194 77dda4a85a7e331014944c859f577d4f 603 SUPERFAMILY SSF55486 190 447 4.69E-12 T 11-10-2018 dqs_1117 361b7917ae9fbb53c19f4197c9c066bb 311 Gene3D G3DSA:3.40.190.10 165 262 1.4E-42 T 11-10-2018 dqs_1117 361b7917ae9fbb53c19f4197c9c066bb 311 SUPERFAMILY SSF46785 9 118 6.8E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1117 361b7917ae9fbb53c19f4197c9c066bb 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 5.9E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1117 361b7917ae9fbb53c19f4197c9c066bb 311 Gene3D G3DSA:1.10.10.10 11 101 6.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1117 361b7917ae9fbb53c19f4197c9c066bb 311 Pfam PF03466 LysR substrate binding domain 98 291 2.8E-26 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1117 361b7917ae9fbb53c19f4197c9c066bb 311 SUPERFAMILY SSF53850 99 295 2.9E-27 T 11-10-2018 dqs_1117 361b7917ae9fbb53c19f4197c9c066bb 311 Gene3D G3DSA:3.40.190.10 107 292 1.4E-42 T 11-10-2018 dqs_2907 bd4b359c8d6101b118769b9b8af1a1fe 365 Gene3D G3DSA:2.30.30.280 211 285 4.2E-25 T 11-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 dqs_2907 bd4b359c8d6101b118769b9b8af1a1fe 365 SUPERFAMILY SSF52402 1 243 1.1E-56 T 11-10-2018 dqs_2907 bd4b359c8d6101b118769b9b8af1a1fe 365 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 364 7.5E-131 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 dqs_2907 bd4b359c8d6101b118769b9b8af1a1fe 365 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 1 365 38.083 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 dqs_2907 bd4b359c8d6101b118769b9b8af1a1fe 365 Gene3D G3DSA:3.40.50.620 1 210 5.1E-89 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2907 bd4b359c8d6101b118769b9b8af1a1fe 365 Gene3D G3DSA:2.40.30.10 286 365 4.7E-23 T 11-10-2018 dqs_2907 bd4b359c8d6101b118769b9b8af1a1fe 365 Pfam PF03054 tRNA methyl transferase 1 364 2.1E-133 T 11-10-2018 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 10 154 4.8E-45 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 SUPERFAMILY SSF53163 9 167 2.88E-45 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 10 160 8.6E-63 T 11-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 Pfam PF01750 Hydrogenase maturation protease 26 153 9.0E-42 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 PRINTS PR00446 Hydrogen uptake protein signature 9 21 2.4E-35 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 PRINTS PR00446 Hydrogen uptake protein signature 73 89 2.4E-35 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 PRINTS PR00446 Hydrogen uptake protein signature 21 32 2.4E-35 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 PRINTS PR00446 Hydrogen uptake protein signature 41 58 2.4E-35 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 PRINTS PR00446 Hydrogen uptake protein signature 62 72 2.4E-35 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 dqs_3944 eb03b82ba913adf6ea77ecbfddb8c669 205 Gene3D G3DSA:3.40.50.1450 9 169 1.9E-38 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily dqs_4120 7434bb46d63787452be2f2584e3d5b3d 223 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 88 108 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 dqs_4120 7434bb46d63787452be2f2584e3d5b3d 223 Pfam PF00484 Carbonic anhydrase 43 195 5.0E-50 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 dqs_4120 7434bb46d63787452be2f2584e3d5b3d 223 Gene3D G3DSA:3.40.1050.10 1 216 5.5E-84 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 dqs_4120 7434bb46d63787452be2f2584e3d5b3d 223 SMART SM00947 36 199 7.0E-66 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 dqs_4120 7434bb46d63787452be2f2584e3d5b3d 223 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 48 55 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 dqs_4120 7434bb46d63787452be2f2584e3d5b3d 223 SUPERFAMILY SSF53056 6 217 1.44E-75 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 Pfam PF00072 Response regulator receiver domain 947 1055 2.2E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 SMART SM00448 945 1057 1.5E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 SUPERFAMILY SSF52172 945 1069 2.28E-28 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 Gene3D G3DSA:1.10.287.130 661 764 2.6E-23 T 11-10-2018 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 SMART SM00388 700 766 3.0E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 Pfam PF00512 His Kinase A (phospho-acceptor) domain 700 766 3.1E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 SMART SM00387 813 922 2.4E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 814 920 6.5E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 PRINTS PR00344 Bacterial sensor protein C-terminal signature 867 877 9.2E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 PRINTS PR00344 Bacterial sensor protein C-terminal signature 849 863 9.2E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 PRINTS PR00344 Bacterial sensor protein C-terminal signature 906 919 9.2E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 PRINTS PR00344 Bacterial sensor protein C-terminal signature 882 900 9.2E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 Gene3D G3DSA:1.10.4160.10 40 501 1.1E-12 T 11-10-2018 IPR038271 Purine-cytosine permease superfamily dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 SUPERFAMILY SSF47384 686 767 1.12E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 SUPERFAMILY SSF55874 757 918 2.49E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 Gene3D G3DSA:3.30.565.10 765 923 7.5E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0724 a3e0cabac80b564859c78f1cd000bda2 1153 Gene3D G3DSA:3.40.50.12740 944 1147 4.0E-27 T 11-10-2018 dqs_2920 45343f2f650424c605022b8cf3486e1e 625 Pfam PF00664 ABC transporter transmembrane region 45 277 4.0E-15 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_2920 45343f2f650424c605022b8cf3486e1e 625 Gene3D G3DSA:1.20.1560.10 19 353 6.3E-30 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_2920 45343f2f650424c605022b8cf3486e1e 625 SMART SM00382 392 584 5.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2920 45343f2f650424c605022b8cf3486e1e 625 SUPERFAMILY SSF52540 390 608 1.36E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2920 45343f2f650424c605022b8cf3486e1e 625 Gene3D G3DSA:3.40.50.300 383 608 8.6E-52 T 11-10-2018 dqs_2920 45343f2f650424c605022b8cf3486e1e 625 SUPERFAMILY SSF90123 32 340 5.49E-35 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_2920 45343f2f650424c605022b8cf3486e1e 625 Pfam PF00005 ABC transporter 388 538 2.4E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2721 a1f7037a2dcc4f22a62391adfdb1d87b 335 Gene3D G3DSA:1.10.760.10 42 189 5.0E-111 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2721 a1f7037a2dcc4f22a62391adfdb1d87b 335 Pfam PF00034 Cytochrome c 198 307 4.3E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2721 a1f7037a2dcc4f22a62391adfdb1d87b 335 SUPERFAMILY SSF46626 176 325 8.64E-42 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2721 a1f7037a2dcc4f22a62391adfdb1d87b 335 SUPERFAMILY SSF46626 26 177 3.51E-48 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2721 a1f7037a2dcc4f22a62391adfdb1d87b 335 Gene3D G3DSA:1.10.760.10 190 313 5.0E-111 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2721 a1f7037a2dcc4f22a62391adfdb1d87b 335 Pfam PF03150 Di-haem cytochrome c peroxidase 43 189 3.5E-49 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 dqs_2721 a1f7037a2dcc4f22a62391adfdb1d87b 335 PIRSF PIRSF000294 4 331 2.4E-126 T 11-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 dqs_2823 222620dbd505d3b943504c61513a8ecd 159 PIRSF PIRSF003174 1 159 6.4E-72 T 11-10-2018 IPR010292 Uncharacterised protein family CreA dqs_2823 222620dbd505d3b943504c61513a8ecd 159 Pfam PF05981 CreA protein 25 151 2.0E-56 T 11-10-2018 IPR010292 Uncharacterised protein family CreA dqs_3541 91400c027e03b01b3396bde2665d0547 177 PIRSF PIRSF002162 1 177 2.8E-46 T 11-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3541 91400c027e03b01b3396bde2665d0547 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 11-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3541 91400c027e03b01b3396bde2665d0547 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.8E-72 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 dqs_3541 91400c027e03b01b3396bde2665d0547 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.934 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 dqs_3541 91400c027e03b01b3396bde2665d0547 177 SUPERFAMILY SSF56053 1 82 6.28E-23 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3541 91400c027e03b01b3396bde2665d0547 177 Gene3D G3DSA:3.90.930.12 1 82 1.4E-26 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3541 91400c027e03b01b3396bde2665d0547 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 6.7E-34 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 dqs_3541 91400c027e03b01b3396bde2665d0547 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 6.7E-34 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 dqs_3541 91400c027e03b01b3396bde2665d0547 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 6.7E-34 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 dqs_3541 91400c027e03b01b3396bde2665d0547 177 SUPERFAMILY SSF56053 83 177 2.09E-36 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3541 91400c027e03b01b3396bde2665d0547 177 Gene3D G3DSA:3.90.930.12 83 177 9.8E-40 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3541 91400c027e03b01b3396bde2665d0547 177 Pfam PF00347 Ribosomal protein L6 11 82 1.7E-14 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3541 91400c027e03b01b3396bde2665d0547 177 Pfam PF00347 Ribosomal protein L6 90 164 3.4E-21 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0214 36358c1e521a550b57c3cbe1daece700 1023 SUPERFAMILY SSF52540 1 1012 1.7E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0214 36358c1e521a550b57c3cbe1daece700 1023 Gene3D G3DSA:3.40.50.300 1 277 5.4E-41 T 11-10-2018 dqs_0214 36358c1e521a550b57c3cbe1daece700 1023 Pfam PF13476 AAA domain 5 219 3.8E-24 T 11-10-2018 IPR038729 Rad50/SbcC-type AAA domain dqs_0214 36358c1e521a550b57c3cbe1daece700 1023 Gene3D G3DSA:3.40.50.300 792 1022 3.3E-25 T 11-10-2018 dqs_0214 36358c1e521a550b57c3cbe1daece700 1023 Pfam PF13558 Putative exonuclease SbcCD, C subunit 900 981 5.8E-13 T 11-10-2018 dqs_2658 ceeb5656f6a36b8c8d7392a43ba54ea6 212 Pfam PF16925 Bacterial transcriptional repressor C-terminal 96 209 3.2E-49 T 11-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal dqs_2658 ceeb5656f6a36b8c8d7392a43ba54ea6 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 4.0E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2658 ceeb5656f6a36b8c8d7392a43ba54ea6 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 4.0E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2658 ceeb5656f6a36b8c8d7392a43ba54ea6 212 SUPERFAMILY SSF46689 16 89 4.16E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2658 ceeb5656f6a36b8c8d7392a43ba54ea6 212 SUPERFAMILY SSF48498 96 210 1.22E-29 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_2658 ceeb5656f6a36b8c8d7392a43ba54ea6 212 Gene3D G3DSA:1.10.357.10 23 209 1.8E-69 T 11-10-2018 dqs_2658 ceeb5656f6a36b8c8d7392a43ba54ea6 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 69 7.6E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_1313 84aff707912d55ab77a51bc862e5591c 619 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 7 278 1.3E-121 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_1313 84aff707912d55ab77a51bc862e5591c 619 SUPERFAMILY SSF52518 3 377 1.48E-80 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1313 84aff707912d55ab77a51bc862e5591c 619 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 9 613 3.6E-264 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_1313 84aff707912d55ab77a51bc862e5591c 619 SUPERFAMILY SSF52922 488 614 7.2E-32 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_1313 84aff707912d55ab77a51bc862e5591c 619 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 6 616 46.031 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_1313 84aff707912d55ab77a51bc862e5591c 619 Gene3D G3DSA:3.40.50.970 313 486 8.9E-70 T 11-10-2018 dqs_1313 84aff707912d55ab77a51bc862e5591c 619 Pfam PF02779 Transketolase, pyrimidine binding domain 314 474 6.7E-43 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_1313 84aff707912d55ab77a51bc862e5591c 619 Gene3D G3DSA:3.40.50.920 491 615 2.7E-40 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_1313 84aff707912d55ab77a51bc862e5591c 619 ProSitePatterns PS00802 Transketolase signature 2. 421 437 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_1313 84aff707912d55ab77a51bc862e5591c 619 SMART SM00861 315 479 1.3E-75 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_1313 84aff707912d55ab77a51bc862e5591c 619 SUPERFAMILY SSF52518 313 500 3.48E-63 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1313 84aff707912d55ab77a51bc862e5591c 619 Pfam PF02780 Transketolase, C-terminal domain 491 607 1.1E-26 T 11-10-2018 IPR033248 Transketolase, C-terminal domain dqs_1313 84aff707912d55ab77a51bc862e5591c 619 ProSitePatterns PS00801 Transketolase signature 1. 32 51 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_2048 17bb9db382cc35f0e8ce3c8d4a9791aa 263 SMART SM00967 32 107 1.8E-7 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 dqs_2048 17bb9db382cc35f0e8ce3c8d4a9791aa 263 Gene3D G3DSA:3.40.1280.10 111 262 1.6E-50 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal dqs_2048 17bb9db382cc35f0e8ce3c8d4a9791aa 263 SUPERFAMILY SSF55315 3 104 3.06E-19 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like dqs_2048 17bb9db382cc35f0e8ce3c8d4a9791aa 263 SUPERFAMILY SSF75217 115 260 3.73E-44 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases dqs_2048 17bb9db382cc35f0e8ce3c8d4a9791aa 263 Gene3D G3DSA:3.30.1330.30 2 105 5.0E-16 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like dqs_2048 17bb9db382cc35f0e8ce3c8d4a9791aa 263 Pfam PF00588 SpoU rRNA Methylase family 116 253 1.1E-36 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 SUPERFAMILY SSF52172 1 135 2.42E-37 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 Gene3D G3DSA:3.40.50.2300 1 132 5.6E-35 T 11-10-2018 dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 Pfam PF00072 Response regulator receiver domain 3 115 1.9E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 Gene3D G3DSA:3.30.70.270 133 314 1.1E-59 T 11-10-2018 dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 SUPERFAMILY SSF55073 151 312 5.1E-48 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 Pfam PF00990 Diguanylate cyclase, GGDEF domain 147 309 8.7E-50 T 11-10-2018 IPR000160 GGDEF domain dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 SMART SM00448 1 115 3.1E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 143 312 3.8E-52 T 11-10-2018 IPR000160 GGDEF domain dqs_2185 385c36a5ea54d3410e9e4959905a3eed 325 SMART SM00267 135 313 9.1E-67 T 11-10-2018 IPR000160 GGDEF domain dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 SMART SM00387 31 192 9.1E-5 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 SUPERFAMILY SSF55874 9 224 1.63E-65 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 Hamap MF_00505 Chaperone protein HtpG [htpG]. 6 638 32.674 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 SUPERFAMILY SSF54211 242 501 1.74E-98 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 Gene3D G3DSA:3.40.50.11260 413 502 9.7E-34 T 11-10-2018 dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 29 38 - T 11-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 Gene3D G3DSA:3.30.565.10 1 235 4.0E-75 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 190 1.1E-12 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 PRINTS PR00775 90kDa heat shock protein signature 79 96 3.0E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 PRINTS PR00775 90kDa heat shock protein signature 180 197 3.0E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 PRINTS PR00775 90kDa heat shock protein signature 30 52 3.0E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 PRINTS PR00775 90kDa heat shock protein signature 124 146 3.0E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 PRINTS PR00775 90kDa heat shock protein signature 198 216 3.0E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 PRINTS PR00775 90kDa heat shock protein signature 97 114 3.0E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 PRINTS PR00775 90kDa heat shock protein signature 9 29 3.0E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 SUPERFAMILY SSF110942 527 638 1.06E-37 T 11-10-2018 IPR037196 HSP90, C-terminal domain dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 Gene3D G3DSA:1.20.120.790 508 639 2.6E-46 T 11-10-2018 IPR037196 HSP90, C-terminal domain dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 PIRSF PIRSF002583 1 643 1.9E-214 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 Pfam PF00183 Hsp90 protein 222 638 8.9E-135 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 dqs_1549 824b5dd622b90b7bcb7af30f7c2623a6 643 Gene3D G3DSA:3.30.230.80 241 412 4.8E-68 T 11-10-2018 dqs_0393 9d6262ca2240a2f08e18e1713fbd62a4 194 Gene3D G3DSA:3.30.70.1070 111 193 6.9E-13 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 dqs_0393 9d6262ca2240a2f08e18e1713fbd62a4 194 SUPERFAMILY SSF110997 116 190 1.09E-14 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 dqs_0393 9d6262ca2240a2f08e18e1713fbd62a4 194 Pfam PF05036 Sporulation related domain 117 190 4.2E-13 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 dqs_2292 6e1cc2a8a3df4c5ed39db12a875c5658 271 Pfam PF01569 PAP2 superfamily 93 204 2.3E-21 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase dqs_2292 6e1cc2a8a3df4c5ed39db12a875c5658 271 SMART SM00014 89 204 3.5E-12 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase dqs_2292 6e1cc2a8a3df4c5ed39db12a875c5658 271 Gene3D G3DSA:1.20.144.10 132 223 3.9E-20 T 11-10-2018 dqs_2292 6e1cc2a8a3df4c5ed39db12a875c5658 271 SUPERFAMILY SSF48317 23 215 6.67E-27 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 Gene3D G3DSA:3.40.50.12740 2 206 3.2E-54 T 11-10-2018 dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 SUPERFAMILY SSF46894 136 205 6.46E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 200 1.9E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 SMART SM00448 2 116 3.1E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 6.8E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 6.8E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 6.8E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 SUPERFAMILY SSF52172 3 133 1.57E-30 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 SMART SM00421 144 201 9.1E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3579 6194c98a78bc0f7a64f80bf79b08f493 208 Pfam PF00072 Response regulator receiver domain 4 117 6.5E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1728 828c0452a149d197b45a90c0d03f28b4 389 Gene3D G3DSA:3.40.630.10 16 371 1.2E-142 T 11-10-2018 dqs_1728 828c0452a149d197b45a90c0d03f28b4 389 Gene3D G3DSA:3.30.70.360 181 295 1.2E-142 T 11-10-2018 dqs_1728 828c0452a149d197b45a90c0d03f28b4 389 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 374 2.2E-112 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 dqs_1728 828c0452a149d197b45a90c0d03f28b4 389 PIRSF PIRSF005962 1 387 1.2E-130 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 dqs_1728 828c0452a149d197b45a90c0d03f28b4 389 SUPERFAMILY SSF55031 183 296 3.66E-34 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain dqs_1728 828c0452a149d197b45a90c0d03f28b4 389 Pfam PF01546 Peptidase family M20/M25/M40 73 383 6.8E-39 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 dqs_1728 828c0452a149d197b45a90c0d03f28b4 389 SUPERFAMILY SSF53187 2 386 1.86E-85 T 11-10-2018 dqs_1728 828c0452a149d197b45a90c0d03f28b4 389 Pfam PF07687 Peptidase dimerisation domain 185 279 3.6E-12 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain dqs_1044 d5759fd7734bc7c3de1c41aed40f8c1c 323 Pfam PF04392 ABC transporter substrate binding protein 30 321 4.7E-110 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein dqs_1044 d5759fd7734bc7c3de1c41aed40f8c1c 323 Gene3D G3DSA:3.40.50.2300 47 293 1.8E-90 T 11-10-2018 dqs_1044 d5759fd7734bc7c3de1c41aed40f8c1c 323 SUPERFAMILY SSF53822 35 284 2.04E-21 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_1044 d5759fd7734bc7c3de1c41aed40f8c1c 323 Gene3D G3DSA:3.40.50.2300 144 315 1.8E-90 T 11-10-2018 dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 Pfam PF07549 SecD/SecF GG Motif 32 58 8.8E-8 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 PRINTS PR01755 Bacterial translocase SecF protein signature 232 247 3.2E-25 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 PRINTS PR01755 Bacterial translocase SecF protein signature 200 218 3.2E-25 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 PRINTS PR01755 Bacterial translocase SecF protein signature 152 166 3.2E-25 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 PRINTS PR01755 Bacterial translocase SecF protein signature 37 52 3.2E-25 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 Pfam PF02355 Protein export membrane protein 109 292 2.1E-61 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 95 281 1.5E-47 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 284 1.9E-69 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 Gene3D G3DSA:1.20.1640.10 100 306 3.9E-12 T 11-10-2018 dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 SUPERFAMILY SSF82866 76 292 4.97E-37 T 11-10-2018 dqs_0974 05aa51ea8e77f595441a0d70e53d281f 310 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 295 27.78 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 dqs_2451 270f904f154835e3c54490fc89e076ba 358 Gene3D G3DSA:3.40.50.2000 1 159 3.5E-38 T 11-10-2018 dqs_2451 270f904f154835e3c54490fc89e076ba 358 SUPERFAMILY SSF53756 2 344 6.59E-84 T 11-10-2018 dqs_2451 270f904f154835e3c54490fc89e076ba 358 Gene3D G3DSA:3.40.50.2000 180 346 5.0E-39 T 11-10-2018 dqs_2451 270f904f154835e3c54490fc89e076ba 358 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 82 317 1.0E-37 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 Gene3D G3DSA:2.40.50.100 597 668 2.1E-20 T 11-10-2018 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 Pfam PF00364 Biotin-requiring enzyme 604 666 1.2E-15 T 11-10-2018 IPR000089 Biotin/lipoyl attachment dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 Gene3D G3DSA:3.30.470.130 1 450 4.0E-200 T 11-10-2018 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 446 8.3E-192 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 107 3.4E-45 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 Pfam PF02785 Biotin carboxylase C-terminal domain 337 445 7.0E-38 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 624 641 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 SUPERFAMILY SSF51230 592 668 5.1E-19 T 11-10-2018 IPR011053 Single hybrid motif dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 Gene3D G3DSA:3.30.700.30 452 588 1.1E-27 T 11-10-2018 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 SUPERFAMILY SSF51246 332 448 3.24E-42 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 SMART SM00878 337 445 1.6E-63 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 SUPERFAMILY SSF52440 1 112 3.31E-48 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 1.8E-78 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_0758 cfe231c6de89ad976f2ea570732aefd4 668 SUPERFAMILY SSF56059 83 349 4.07E-67 T 11-10-2018 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 8.2E-46 T 11-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 SUPERFAMILY SSF50615 10 94 1.55E-28 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 Gene3D G3DSA:2.40.30.20 1 93 2.9E-33 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 Gene3D G3DSA:1.20.150.20 383 512 6.7E-47 T 11-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.57 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 PIRSF PIRSF039088 1 512 6.2E-238 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 511 7.8E-249 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 SUPERFAMILY SSF52540 96 381 2.16E-95 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 92 1.8E-15 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 SUPERFAMILY SSF47917 383 511 2.88E-46 T 11-10-2018 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 Gene3D G3DSA:3.40.50.300 94 382 1.9E-131 T 11-10-2018 dqs_0166 00e5929f5c0d4fcb8f1aec28d0fb54a9 512 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 3.9E-75 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_1744 e7eb8ad348072025617dc145a1d37b1e 192 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 185 5.0E-51 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 dqs_1744 e7eb8ad348072025617dc145a1d37b1e 192 Pfam PF02545 Maf-like protein 3 185 2.0E-44 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 dqs_1744 e7eb8ad348072025617dc145a1d37b1e 192 PIRSF PIRSF006305 1 191 2.2E-43 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 dqs_1744 e7eb8ad348072025617dc145a1d37b1e 192 SUPERFAMILY SSF52972 2 185 4.05E-58 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like dqs_1744 e7eb8ad348072025617dc145a1d37b1e 192 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 29.926 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 dqs_1744 e7eb8ad348072025617dc145a1d37b1e 192 Gene3D G3DSA:3.90.950.10 2 191 8.1E-61 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like dqs_3443 6161ea1c5a192aa34d11346567a2f099 169 Pfam PF01467 Cytidylyltransferase-like 39 130 6.3E-12 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 dqs_3443 6161ea1c5a192aa34d11346567a2f099 169 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 37 100 6.2E-12 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 dqs_3443 6161ea1c5a192aa34d11346567a2f099 169 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 27 167 1.4E-55 T 11-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 dqs_3443 6161ea1c5a192aa34d11346567a2f099 169 Gene3D G3DSA:3.40.50.620 22 169 4.5E-29 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3443 6161ea1c5a192aa34d11346567a2f099 169 SUPERFAMILY SSF52374 35 166 1.83E-21 T 11-10-2018 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 Gene3D G3DSA:3.40.50.720 1 194 1.9E-57 T 11-10-2018 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 PIRSF PIRSF500136 1 426 1.2E-143 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 Gene3D G3DSA:3.40.50.720 196 425 1.9E-59 T 11-10-2018 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 176 3.9E-29 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 SUPERFAMILY SSF51735 3 188 1.38E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3322 c57c366d793b2c392943819f6d22d53e 426 PIRSF PIRSF000124 2 426 6.2E-60 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 SUPERFAMILY SSF48179 197 288 1.39E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 314 413 1.6E-21 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 SMART SM00984 313 413 3.9E-35 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 SUPERFAMILY SSF52413 298 424 8.63E-30 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 406 2.9E-115 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 dqs_3322 c57c366d793b2c392943819f6d22d53e 426 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 198 286 1.5E-23 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_3345 ea08170a087e8feda1f492bd261642e6 1172 Pfam PF14579 Helix-hairpin-helix motif 815 905 5.2E-26 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3345 ea08170a087e8feda1f492bd261642e6 1172 Pfam PF02811 PHP domain 15 181 1.5E-39 T 11-10-2018 IPR004013 PHP domain GO:0003824 dqs_3345 ea08170a087e8feda1f492bd261642e6 1172 SMART SM00481 14 81 4.6E-20 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal dqs_3345 ea08170a087e8feda1f492bd261642e6 1172 Gene3D G3DSA:1.10.10.1600 442 524 2.7E-22 T 11-10-2018 dqs_3345 ea08170a087e8feda1f492bd261642e6 1172 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 13 1037 0.0 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3345 ea08170a087e8feda1f492bd261642e6 1172 SUPERFAMILY SSF89550 13 271 4.12E-12 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 dqs_3345 ea08170a087e8feda1f492bd261642e6 1172 Gene3D G3DSA:3.20.20.140 2 278 1.4E-84 T 11-10-2018 dqs_3345 ea08170a087e8feda1f492bd261642e6 1172 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 300 741 1.5E-170 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3622 ea7f14aea0d90dfb42c00a26a961c71c 346 SUPERFAMILY SSF81342 126 334 3.53E-38 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 dqs_3622 ea7f14aea0d90dfb42c00a26a961c71c 346 Gene3D G3DSA:1.20.950.20 126 341 1.8E-58 T 11-10-2018 dqs_3622 ea7f14aea0d90dfb42c00a26a961c71c 346 Pfam PF01292 Prokaryotic cytochrome b561 132 311 7.1E-16 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 dqs_3622 ea7f14aea0d90dfb42c00a26a961c71c 346 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 130 330 3.6E-49 T 11-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 dqs_2281 7aba41c5d154e1c74edf63c9faaea742 437 SUPERFAMILY SSF50952 64 435 5.23E-39 T 11-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 dqs_2281 7aba41c5d154e1c74edf63c9faaea742 437 Gene3D G3DSA:2.120.10.30 163 430 1.7E-17 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like dqs_2281 7aba41c5d154e1c74edf63c9faaea742 437 Pfam PF07995 Glucose / Sorbosone dehydrogenase 169 362 2.4E-14 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 Pfam PF00551 Formyl transferase 6 184 2.9E-45 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 Pfam PF02911 Formyl transferase, C-terminal domain 207 305 5.7E-24 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 312 1.8E-95 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 SUPERFAMILY SSF50486 208 313 1.37E-29 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 Gene3D G3DSA:3.10.25.10 210 316 1.4E-28 T 11-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 SUPERFAMILY SSF53328 4 207 3.53E-68 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 308 36.449 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 dqs_0110 3516ec7297b11ed3ac69d732545d1ec0 321 Gene3D G3DSA:3.40.50.170 1 209 3.5E-81 T 11-10-2018 dqs_2169 23a855b2cb2c049afb5054cfc57db9c4 107 SUPERFAMILY SSF89360 1 96 8.24E-33 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 dqs_2169 23a855b2cb2c049afb5054cfc57db9c4 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 dqs_2169 23a855b2cb2c049afb5054cfc57db9c4 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 2.3E-26 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 dqs_2169 23a855b2cb2c049afb5054cfc57db9c4 107 Gene3D G3DSA:2.60.300.12 2 107 2.5E-38 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 dqs_2169 23a855b2cb2c049afb5054cfc57db9c4 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 2.8E-38 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 dqs_2169 23a855b2cb2c049afb5054cfc57db9c4 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 5.2E-57 T 11-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 dqs_3130 0c666ff2e858ee7d80c076765b5fd1f7 739 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 90 739 2.8E-109 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 dqs_3130 0c666ff2e858ee7d80c076765b5fd1f7 739 Gene3D G3DSA:2.40.170.20 200 739 2.4E-173 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_3130 0c666ff2e858ee7d80c076765b5fd1f7 739 Pfam PF00593 TonB dependent receptor 303 738 4.5E-52 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_3130 0c666ff2e858ee7d80c076765b5fd1f7 739 Pfam PF07715 TonB-dependent Receptor Plug Domain 88 188 3.5E-14 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_3130 0c666ff2e858ee7d80c076765b5fd1f7 739 Gene3D G3DSA:2.170.130.10 66 197 4.3E-42 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_3130 0c666ff2e858ee7d80c076765b5fd1f7 739 SUPERFAMILY SSF56935 38 739 1.71E-123 T 11-10-2018 dqs_3130 0c666ff2e858ee7d80c076765b5fd1f7 739 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 722 739 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site dqs_0220 c5a3ac1ee282dcdc0b38b1fd633540ba 141 SMART SM00342 33 115 1.4E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0220 c5a3ac1ee282dcdc0b38b1fd633540ba 141 Gene3D G3DSA:1.10.10.60 18 119 3.1E-29 T 11-10-2018 dqs_0220 c5a3ac1ee282dcdc0b38b1fd633540ba 141 SUPERFAMILY SSF46689 69 118 3.01E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0220 c5a3ac1ee282dcdc0b38b1fd633540ba 141 SUPERFAMILY SSF46689 18 66 2.15E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0220 c5a3ac1ee282dcdc0b38b1fd633540ba 141 Pfam PF12833 Helix-turn-helix domain 39 116 1.9E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 9 17 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 Pfam PF00710 Asparaginase, N-terminal 7 188 9.2E-54 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 PIRSF PIRSF001220 3 319 1.0E-72 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 Gene3D G3DSA:3.40.50.1170 2 200 1.7E-71 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 PIRSF PIRSF500176 3 317 1.1E-65 T 11-10-2018 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 SMART SM00870 6 317 6.8E-105 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 SUPERFAMILY SSF53774 4 313 2.75E-81 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 Gene3D G3DSA:3.40.50.40 215 318 2.3E-22 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 PRINTS PR00139 Asparaginase/glutaminase family signature 7 18 1.2E-18 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 PRINTS PR00139 Asparaginase/glutaminase family signature 87 105 1.2E-18 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 PRINTS PR00139 Asparaginase/glutaminase family signature 262 280 1.2E-18 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0447 8e42c659f50ba8444e0487ecdb05394f 324 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 88 98 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 Gene3D G3DSA:3.40.50.300 613 934 3.7E-135 T 11-10-2018 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 Gene3D G3DSA:3.30.190.20 131 243 9.8E-242 T 11-10-2018 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 Gene3D G3DSA:1.10.8.280 286 402 9.8E-242 T 11-10-2018 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 Gene3D G3DSA:3.40.50.300 6 594 9.8E-242 T 11-10-2018 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 ProSitePatterns PS00211 ABC transporters family signature. 828 842 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 Gene3D G3DSA:1.20.1580.10 90 491 9.8E-242 T 11-10-2018 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 938 22.308 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 SUPERFAMILY SSF52540 612 912 1.17E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 923 0.0 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 Gene3D G3DSA:1.20.1580.10 691 828 3.7E-135 T 11-10-2018 dqs_3526 553b7eed2fb94670be9e3f352c386d1d 945 SUPERFAMILY SSF52540 1 568 4.17E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2576 b46492282720deabab3bd0640a6a4165 306 SMART SM00859 5 120 2.0E-4 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_2576 b46492282720deabab3bd0640a6a4165 306 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 130 267 2.9E-65 T 11-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2576 b46492282720deabab3bd0640a6a4165 306 PIRSF PIRSF015689 1 297 1.8E-132 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2576 b46492282720deabab3bd0640a6a4165 306 Gene3D G3DSA:3.40.50.720 7 285 5.5E-123 T 11-10-2018 dqs_2576 b46492282720deabab3bd0640a6a4165 306 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 114 2.0E-9 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_2576 b46492282720deabab3bd0640a6a4165 306 SUPERFAMILY SSF51735 1 154 1.97E-28 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2576 b46492282720deabab3bd0640a6a4165 306 SUPERFAMILY SSF55347 130 268 2.68E-60 T 11-10-2018 dqs_2576 b46492282720deabab3bd0640a6a4165 306 Gene3D G3DSA:3.30.360.10 130 273 5.5E-123 T 11-10-2018 dqs_2576 b46492282720deabab3bd0640a6a4165 306 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 3 292 3.5E-143 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_2576 b46492282720deabab3bd0640a6a4165 306 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 306 149.694 T 11-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 dqs_1802 149939765d497432480ce180acefbf50 377 Pfam PF00589 Phage integrase family 188 358 6.9E-26 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 dqs_1802 149939765d497432480ce180acefbf50 377 Gene3D G3DSA:1.10.150.130 64 183 4.8E-10 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal dqs_1802 149939765d497432480ce180acefbf50 377 SUPERFAMILY SSF56349 68 363 3.83E-53 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 dqs_1802 149939765d497432480ce180acefbf50 377 Gene3D G3DSA:1.10.443.10 184 374 1.9E-34 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 dqs_1756 76497e9dcb2e42a2161801a1089fca63 181 Gene3D G3DSA:1.10.10.880 1 66 2.1E-13 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 dqs_1756 76497e9dcb2e42a2161801a1089fca63 181 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 2 75 1.1E-15 T 11-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 dqs_1756 76497e9dcb2e42a2161801a1089fca63 181 SUPERFAMILY SSF89069 1 66 3.53E-12 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 dqs_0787 26508742803c1749be5c7f6f37461b41 127 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 5.8E-34 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0787 26508742803c1749be5c7f6f37461b41 127 Pfam PF01250 Ribosomal protein S6 3 91 1.3E-28 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0787 26508742803c1749be5c7f6f37461b41 127 SUPERFAMILY SSF54995 1 104 1.31E-39 T 11-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0787 26508742803c1749be5c7f6f37461b41 127 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 22.327 T 11-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 dqs_0787 26508742803c1749be5c7f6f37461b41 127 Gene3D G3DSA:3.30.70.60 1 92 1.7E-33 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 SUPERFAMILY SSF54862 35 172 1.31E-31 T 11-10-2018 dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 Pfam PF04060 Putative Fe-S cluster 41 73 1.6E-16 T 11-10-2018 IPR007202 4Fe-4S domain GO:0051536 dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 Gene3D G3DSA:1.10.15.40 36 80 1.0E-10 T 11-10-2018 dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 PIRSF PIRSF005784 1 183 1.1E-85 T 11-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 182 7.0E-83 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 Pfam PF14697 4Fe-4S dicluster domain 106 160 7.7E-17 T 11-10-2018 dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 1 165 25.326 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 dqs_1564 aeaf8dff5a980e478b12344a0dd40d9c 183 Gene3D G3DSA:3.30.70.20 81 178 5.1E-21 T 11-10-2018 dqs_2617 eb0ac8d2d3f3caeb9bb335b3c8aa81e3 485 Gene3D G3DSA:3.40.605.10 5 254 2.8E-74 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_2617 eb0ac8d2d3f3caeb9bb335b3c8aa81e3 485 Pfam PF00171 Aldehyde dehydrogenase family 19 474 5.3E-151 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_2617 eb0ac8d2d3f3caeb9bb335b3c8aa81e3 485 Gene3D G3DSA:3.40.309.10 255 484 1.0E-73 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_2617 eb0ac8d2d3f3caeb9bb335b3c8aa81e3 485 SUPERFAMILY SSF53720 16 480 2.36E-145 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_2633 807286624c9ac806a7e989d24381be04 181 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 1.2E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2633 807286624c9ac806a7e989d24381be04 181 SUPERFAMILY SSF48498 76 174 6.67E-14 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_2633 807286624c9ac806a7e989d24381be04 181 SUPERFAMILY SSF46689 4 71 3.99E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2633 807286624c9ac806a7e989d24381be04 181 Gene3D G3DSA:1.10.357.10 1 179 6.8E-52 T 11-10-2018 dqs_2633 807286624c9ac806a7e989d24381be04 181 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 7.3E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2633 807286624c9ac806a7e989d24381be04 181 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 7.3E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_1969 5a0b85050dfe1d94c58b2fc0862d65d6 149 Pfam PF05239 PRC-barrel domain 32 109 1.4E-16 T 11-10-2018 IPR027275 PRC-barrel domain dqs_1969 5a0b85050dfe1d94c58b2fc0862d65d6 149 Gene3D G3DSA:2.30.30.240 28 114 1.5E-24 T 11-10-2018 dqs_1969 5a0b85050dfe1d94c58b2fc0862d65d6 149 SUPERFAMILY SSF50346 10 146 1.57E-29 T 11-10-2018 IPR011033 PRC-barrel-like superfamily dqs_1432 813428bb5a825c061cb24bdb938b18f4 364 SUPERFAMILY SSF53335 10 361 1.53E-47 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1432 813428bb5a825c061cb24bdb938b18f4 364 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 295 324 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site dqs_1432 813428bb5a825c061cb24bdb938b18f4 364 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 10 361 1.1E-144 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 dqs_1432 813428bb5a825c061cb24bdb938b18f4 364 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 361 8.1E-148 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 dqs_1432 813428bb5a825c061cb24bdb938b18f4 364 Gene3D G3DSA:3.40.1350.30 45 185 1.0E-119 T 11-10-2018 dqs_1432 813428bb5a825c061cb24bdb938b18f4 364 Gene3D G3DSA:3.40.50.150 14 358 1.0E-119 T 11-10-2018 dqs_1432 813428bb5a825c061cb24bdb938b18f4 364 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 362 40.245 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 dqs_1432 813428bb5a825c061cb24bdb938b18f4 364 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 344 354 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site dqs_2089 ae815021bedb01af7330a2827ae15739 771 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 267 282 4.7E-10 T 11-10-2018 dqs_2089 ae815021bedb01af7330a2827ae15739 771 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 128 143 4.7E-10 T 11-10-2018 dqs_2089 ae815021bedb01af7330a2827ae15739 771 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 298 4.7E-10 T 11-10-2018 dqs_2089 ae815021bedb01af7330a2827ae15739 771 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 4.7E-10 T 11-10-2018 dqs_2089 ae815021bedb01af7330a2827ae15739 771 Gene3D G3DSA:3.30.9.20 40 252 3.7E-121 T 11-10-2018 dqs_2089 ae815021bedb01af7330a2827ae15739 771 SUPERFAMILY SSF51905 1 344 3.89E-37 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2089 ae815021bedb01af7330a2827ae15739 771 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 406 734 8.4E-63 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 dqs_2089 ae815021bedb01af7330a2827ae15739 771 Gene3D G3DSA:3.20.20.70 405 756 1.4E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2089 ae815021bedb01af7330a2827ae15739 771 Pfam PF05834 Lycopene cyclase protein 3 133 2.1E-5 T 11-10-2018 dqs_2089 ae815021bedb01af7330a2827ae15739 771 SUPERFAMILY SSF51395 401 760 8.18E-116 T 11-10-2018 dqs_2089 ae815021bedb01af7330a2827ae15739 771 Gene3D G3DSA:3.50.50.60 3 342 3.7E-121 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 Gene3D G3DSA:3.50.30.20 5 156 3.7E-56 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 266 277 1.5E-10 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 238 247 1.5E-10 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 351 364 1.5E-10 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 266 282 1.3E-38 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 308 319 1.3E-38 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 196 210 1.3E-38 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 283 300 1.3E-38 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 235 249 1.3E-38 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 7 134 1.3E-51 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 Gene3D G3DSA:3.40.50.880 157 379 3.4E-72 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 7 377 5.0E-143 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 SUPERFAMILY SSF52021 6 142 2.75E-56 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 5 380 48.299 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 SMART SM01097 5 135 2.8E-91 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00097 Anthranilate synthase component II signature 266 277 5.7E-5 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00097 Anthranilate synthase component II signature 238 247 5.7E-5 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 PRINTS PR00097 Anthranilate synthase component II signature 351 364 5.7E-5 T 11-10-2018 dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 Pfam PF00117 Glutamine amidotransferase class-I 199 373 2.7E-45 T 11-10-2018 IPR017926 Glutamine amidotransferase dqs_1504 7208021dfe6c225b65a058ab0dd52456 380 SUPERFAMILY SSF52317 158 377 7.95E-62 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3881 1244b3e6d45c1dfbab8b0359fb0e2787 371 Gene3D G3DSA:3.40.50.2300 26 349 4.8E-106 T 11-10-2018 dqs_3881 1244b3e6d45c1dfbab8b0359fb0e2787 371 Pfam PF13458 Periplasmic binding protein 25 366 1.9E-64 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_3881 1244b3e6d45c1dfbab8b0359fb0e2787 371 Gene3D G3DSA:3.40.50.2300 146 275 4.8E-106 T 11-10-2018 dqs_3881 1244b3e6d45c1dfbab8b0359fb0e2787 371 SUPERFAMILY SSF53822 25 370 1.85E-98 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_3881 1244b3e6d45c1dfbab8b0359fb0e2787 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 4.2E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_3881 1244b3e6d45c1dfbab8b0359fb0e2787 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 25 41 4.2E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_3881 1244b3e6d45c1dfbab8b0359fb0e2787 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 47 63 4.2E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 Pfam PF07498 Rho termination factor, N-terminal domain 21 63 1.1E-13 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 SMART SM00357 68 134 3.7E-16 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 Gene3D G3DSA:3.40.50.300 146 433 3.5E-130 T 11-10-2018 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 SMART SM00959 21 63 9.9E-16 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 SMART SM00382 186 372 1.9E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 Pfam PF07497 Rho termination factor, RNA-binding domain 68 141 3.0E-30 T 11-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 TIGRFAM TIGR00767 rho: transcription termination factor Rho 18 433 3.8E-211 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 SUPERFAMILY SSF68912 17 62 1.65E-9 T 11-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 SUPERFAMILY SSF52540 106 387 8.94E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 SUPERFAMILY SSF50249 65 141 3.68E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 435 240.117 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 Gene3D G3DSA:2.40.50.140 64 139 7.1E-33 T 11-10-2018 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 176 379 9.7E-24 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_1137 385cacf16efbb12851d2f663c2e0ddae 435 Gene3D G3DSA:1.10.720.10 17 63 4.3E-17 T 11-10-2018 dqs_2801 4091562f4ec93f5e1aad55a8a6b332e0 457 Gene3D G3DSA:3.40.50.150 216 449 7.7E-37 T 11-10-2018 dqs_2801 4091562f4ec93f5e1aad55a8a6b332e0 457 Pfam PF08241 Methyltransferase domain 286 382 1.4E-4 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_2801 4091562f4ec93f5e1aad55a8a6b332e0 457 SUPERFAMILY SSF53335 278 446 2.49E-23 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1013 8c84623b8c64d94a89d91bf001885309 993 ProSitePatterns PS01175 Ribonuclease II family signature. 542 566 - T 11-10-2018 IPR022966 Ribonuclease II/R, conserved site dqs_1013 8c84623b8c64d94a89d91bf001885309 993 Pfam PF00773 RNB domain 247 574 3.2E-106 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 SMART SM00316 616 699 2.4E-14 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 SUPERFAMILY SSF50249 207 615 3.83E-144 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1013 8c84623b8c64d94a89d91bf001885309 993 TIGRFAM TIGR02063 RNase_R: ribonuclease R 8 700 4.6E-260 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 Pfam PF08206 Ribonuclease B OB domain 75 132 1.1E-21 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain dqs_1013 8c84623b8c64d94a89d91bf001885309 993 Gene3D G3DSA:2.40.50.140 64 135 6.7E-19 T 11-10-2018 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 SUPERFAMILY SSF50249 55 135 1.11E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1013 8c84623b8c64d94a89d91bf001885309 993 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 56 699 1.1E-225 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 SUPERFAMILY SSF50249 616 696 3.2E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1013 8c84623b8c64d94a89d91bf001885309 993 Hamap MF_01895 Ribonuclease R [rnr]. 26 699 57.288 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 SUPERFAMILY SSF50249 126 224 9.64E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1013 8c84623b8c64d94a89d91bf001885309 993 SMART SM00357 74 133 1.4E-12 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 SMART SM00955 247 575 2.7E-187 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 Gene3D G3DSA:2.40.50.140 619 718 1.9E-21 T 11-10-2018 dqs_1013 8c84623b8c64d94a89d91bf001885309 993 Pfam PF00575 S1 RNA binding domain 615 696 4.7E-13 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 SUPERFAMILY SSF52518 360 553 2.32E-65 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 420 439 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 SUPERFAMILY SSF52518 3 178 3.1E-62 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 Gene3D G3DSA:3.40.50.1220 185 360 8.4E-57 T 11-10-2018 dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 Gene3D G3DSA:3.40.50.970 361 554 6.3E-65 T 11-10-2018 dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 383 531 2.2E-48 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 SUPERFAMILY SSF52467 187 351 6.73E-56 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 327 3.0E-42 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 4.8E-60 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 554 2.7E-207 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 dqs_1142 4c574715ef4118cc1dbf343021a4b131 555 Gene3D G3DSA:3.40.50.970 1 178 1.5E-70 T 11-10-2018 dqs_2578 bb088e4c53721bec60200e81b7c0cb2b 260 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 101 258 4.3E-13 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 dqs_2578 bb088e4c53721bec60200e81b7c0cb2b 260 SUPERFAMILY SSF56529 1 260 3.27E-83 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2578 bb088e4c53721bec60200e81b7c0cb2b 260 Gene3D G3DSA:3.90.850.10 1 260 1.1E-84 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2578 bb088e4c53721bec60200e81b7c0cb2b 260 TIGRFAM TIGR03220 catechol_dmpE: 2-oxopent-4-enoate hydratase 6 259 3.1E-144 T 11-10-2018 IPR017632 2-oxopent-4-enoate hydratase dqs_3724 fdb160fcd21acb6c52f15370801e3fbf 621 SUPERFAMILY SSF51735 117 244 5.12E-21 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3724 fdb160fcd21acb6c52f15370801e3fbf 621 Gene3D G3DSA:3.40.50.720 253 551 2.2E-115 T 11-10-2018 dqs_3724 fdb160fcd21acb6c52f15370801e3fbf 621 SUPERFAMILY SSF51735 251 523 1.71E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3724 fdb160fcd21acb6c52f15370801e3fbf 621 Gene3D G3DSA:3.40.50.720 115 238 1.9E-31 T 11-10-2018 dqs_3724 fdb160fcd21acb6c52f15370801e3fbf 621 Pfam PF13727 CoA-binding domain 35 200 4.1E-12 T 11-10-2018 dqs_3724 fdb160fcd21acb6c52f15370801e3fbf 621 Pfam PF02719 Polysaccharide biosynthesis protein 257 544 5.1E-120 T 11-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain dqs_2501 38385b597155b941082d5e5f96f7e756 386 Pfam PF04143 Sulphur transport 55 376 2.3E-54 T 11-10-2018 IPR007272 Sulphur transport domain dqs_2289 43cc1f7e5cc1876110db9f2aa4330cc1 763 Gene3D G3DSA:2.40.170.20 266 763 4.4E-70 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2289 43cc1f7e5cc1876110db9f2aa4330cc1 763 SUPERFAMILY SSF56935 25 762 5.72E-87 T 11-10-2018 dqs_2289 43cc1f7e5cc1876110db9f2aa4330cc1 763 Pfam PF00593 TonB dependent receptor 313 760 4.0E-57 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_2289 43cc1f7e5cc1876110db9f2aa4330cc1 763 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 161 6.5E-10 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_2289 43cc1f7e5cc1876110db9f2aa4330cc1 763 Gene3D G3DSA:2.170.130.10 30 174 9.8E-13 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_3445 f8299c2dfa1b3393ce853736d4ae9c5f 510 SUPERFAMILY SSF100950 240 506 5.71E-84 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_3445 f8299c2dfa1b3393ce853736d4ae9c5f 510 Gene3D G3DSA:3.40.1080.20 349 489 1.8E-40 T 11-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily dqs_3445 f8299c2dfa1b3393ce853736d4ae9c5f 510 Gene3D G3DSA:3.30.750.70 237 325 1.4E-6 T 11-10-2018 dqs_3445 f8299c2dfa1b3393ce853736d4ae9c5f 510 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 19 229 1.2E-29 T 11-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 dqs_3445 f8299c2dfa1b3393ce853736d4ae9c5f 510 Gene3D G3DSA:3.40.1080.10 14 191 3.1E-14 T 11-10-2018 dqs_3445 f8299c2dfa1b3393ce853736d4ae9c5f 510 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 340 476 7.1E-44 T 11-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain dqs_3445 f8299c2dfa1b3393ce853736d4ae9c5f 510 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 18 509 4.6E-248 T 11-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 dqs_3445 f8299c2dfa1b3393ce853736d4ae9c5f 510 SUPERFAMILY SSF100950 11 235 1.87E-73 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_2504 65b2de507121dcff6404db087c2207ba 219 Pfam PF04336 Acyl carrier protein phosphodiesterase 84 193 1.0E-30 T 11-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 dqs_2504 65b2de507121dcff6404db087c2207ba 219 PIRSF PIRSF011489 1 204 2.3E-54 T 11-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 Gene3D G3DSA:3.30.1490.20 123 196 7.8E-34 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 Gene3D G3DSA:3.40.50.20 2 122 2.2E-54 T 11-10-2018 dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 Pfam PF02222 ATP-grasp domain 123 295 2.3E-53 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 SUPERFAMILY SSF52440 4 112 1.44E-34 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 392 1.7E-194 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 SUPERFAMILY SSF56059 120 386 3.76E-59 T 11-10-2018 dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 392 53.42 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 81 7.7E-5 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 dqs_1384 da6d8d47e673c368c10b444dd5a43e03 393 Gene3D G3DSA:3.30.470.20 197 391 6.1E-61 T 11-10-2018 dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 Pfam PF02142 MGS-like domain 15 130 1.2E-30 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 Gene3D G3DSA:3.40.50.1380 1 203 2.1E-81 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5 527 1.6E-221 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 SMART SM00851 15 130 3.1E-64 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 527 44.278 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 SUPERFAMILY SSF52335 4 198 3.36E-67 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 SUPERFAMILY SSF53927 221 527 3.11E-129 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 Gene3D G3DSA:3.40.140.20 218 370 1.9E-59 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 Pfam PF01808 AICARFT/IMPCHase bienzyme 135 457 8.6E-118 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 PIRSF PIRSF000414 1 527 1.5E-215 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 Gene3D G3DSA:3.40.140.20 390 527 2.1E-58 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3034 817f1d755f28195c8c29a2fd47c47503 527 SMART SM00798 135 459 2.0E-199 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_3137 4e65d12a094f12e800311819b3e45c4e 316 Pfam PF09335 SNARE associated Golgi protein 37 157 8.0E-13 T 11-10-2018 IPR032816 SNARE associated Golgi protein dqs_3137 4e65d12a094f12e800311819b3e45c4e 316 SUPERFAMILY SSF52821 189 304 1.7E-17 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_3137 4e65d12a094f12e800311819b3e45c4e 316 Gene3D G3DSA:3.40.250.10 204 310 8.4E-11 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_1192 25a8215f31c75b4125f14b3703236902 343 SUPERFAMILY SSF46589 14 99 1.46E-20 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 dqs_1192 25a8215f31c75b4125f14b3703236902 343 Pfam PF01409 tRNA synthetases class II core domain (F) 92 342 9.6E-97 T 11-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 dqs_1192 25a8215f31c75b4125f14b3703236902 343 SUPERFAMILY SSF55681 92 343 1.7E-75 T 11-10-2018 dqs_1192 25a8215f31c75b4125f14b3703236902 343 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 7.3E-23 T 11-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 dqs_1192 25a8215f31c75b4125f14b3703236902 343 Gene3D G3DSA:3.30.930.10 7 343 6.2E-116 T 11-10-2018 dqs_1192 25a8215f31c75b4125f14b3703236902 343 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 342 47.81 T 11-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 dqs_1192 25a8215f31c75b4125f14b3703236902 343 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 342 3.7E-95 T 11-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 dqs_0254 336ae8d520912ec379b8670d90cff1b9 343 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 43 276 3.2E-60 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 dqs_0254 336ae8d520912ec379b8670d90cff1b9 343 PIRSF PIRSF006470 2 342 1.0E-84 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 dqs_0254 336ae8d520912ec379b8670d90cff1b9 343 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 37 324 1.4E-77 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 dqs_0254 336ae8d520912ec379b8670d90cff1b9 343 Gene3D G3DSA:3.40.190.170 30 343 2.2E-124 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily dqs_0254 336ae8d520912ec379b8670d90cff1b9 343 SUPERFAMILY SSF53850 152 297 1.09E-5 T 11-10-2018 dqs_1807 a9a83eaa7a2d6e350cd601d9da251bf7 288 Gene3D G3DSA:1.10.287.480 178 227 2.4E-13 T 11-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily dqs_1807 a9a83eaa7a2d6e350cd601d9da251bf7 288 Gene3D G3DSA:3.90.1280.10 233 284 1.4E-8 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 dqs_1807 a9a83eaa7a2d6e350cd601d9da251bf7 288 PIRSF PIRSF005261 1 284 4.6E-70 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 dqs_1807 a9a83eaa7a2d6e350cd601d9da251bf7 288 SUPERFAMILY SSF118352 227 283 5.1E-11 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 dqs_1807 a9a83eaa7a2d6e350cd601d9da251bf7 288 SUPERFAMILY SSF64397 9 228 1.28E-57 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 dqs_1807 a9a83eaa7a2d6e350cd601d9da251bf7 288 Pfam PF01430 Hsp33 protein 10 273 1.8E-68 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 dqs_1807 a9a83eaa7a2d6e350cd601d9da251bf7 288 Gene3D G3DSA:3.55.30.10 7 176 1.7E-51 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 dqs_1865 8830791d9af12f116b5cb78888a9b729 306 Pfam PF03466 LysR substrate binding domain 87 293 2.4E-46 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1865 8830791d9af12f116b5cb78888a9b729 306 Gene3D G3DSA:3.40.190.290 91 302 1.8E-42 T 11-10-2018 dqs_1865 8830791d9af12f116b5cb78888a9b729 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.2E-23 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1865 8830791d9af12f116b5cb78888a9b729 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1865 8830791d9af12f116b5cb78888a9b729 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1865 8830791d9af12f116b5cb78888a9b729 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1865 8830791d9af12f116b5cb78888a9b729 306 SUPERFAMILY SSF53850 86 298 1.49E-44 T 11-10-2018 dqs_1865 8830791d9af12f116b5cb78888a9b729 306 SUPERFAMILY SSF46785 4 111 3.53E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1865 8830791d9af12f116b5cb78888a9b729 306 Gene3D G3DSA:1.10.10.10 1 90 2.1E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 178 198 8.5E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 242 256 8.5E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 210 224 8.5E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 276 303 8.5E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 438 457 8.5E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 477 4.8E-174 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 389 457 5.6E-32 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 SMART SM00382 177 308 3.8E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 Gene3D G3DSA:1.10.1750.10 381 479 1.3E-34 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 SMART SM00760 388 457 1.2E-43 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 SUPERFAMILY SSF52540 144 357 3.69E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 Pfam PF11638 DnaA N-terminal domain 4 66 1.9E-18 T 11-10-2018 IPR024633 DnaA N-terminal domain dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 479 32.251 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 Gene3D G3DSA:3.40.50.300 133 309 9.0E-48 T 11-10-2018 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 Gene3D G3DSA:1.10.8.60 311 380 5.8E-24 T 11-10-2018 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 SUPERFAMILY SSF48295 376 479 7.59E-37 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 Gene3D G3DSA:3.30.300.180 3 110 8.5E-25 T 11-10-2018 IPR038454 DnaA, N-terminal domain superfamily dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 ProSitePatterns PS01008 DnaA protein signature. 438 457 - T 11-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 dqs_0001 64dca5249372bb42af5425a2e33ccbbd 480 Pfam PF00308 Bacterial dnaA protein 145 362 4.9E-88 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA dqs_1226 db3367f6980a69f18c2d828babda7b91 657 SUPERFAMILY SSF54211 226 400 7.78E-35 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 496 512 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 534 546 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 279 292 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 114 128 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 427 441 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 514 531 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 32 47 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 67 80 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR00418 DNA topoisomerase II family signature 587 603 9.4E-63 T 11-10-2018 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 SMART SM00433 35 651 5.2E-190 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 Gene3D G3DSA:3.30.565.10 3 214 1.5E-65 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1226 db3367f6980a69f18c2d828babda7b91 657 Gene3D G3DSA:3.30.230.10 224 402 3.8E-43 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_1226 db3367f6980a69f18c2d828babda7b91 657 ProSitePatterns PS00177 DNA topoisomerase II signature. 429 437 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 SUPERFAMILY SSF55874 6 207 3.65E-56 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR01098 Topoisomerase IV subunit B signature 307 323 2.9E-31 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 2.9E-31 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR01098 Topoisomerase IV subunit B signature 179 196 2.9E-31 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR01098 Topoisomerase IV subunit B signature 351 374 2.9E-31 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR01098 Topoisomerase IV subunit B signature 324 339 2.9E-31 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR01098 Topoisomerase IV subunit B signature 375 400 2.9E-31 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 PRINTS PR01098 Topoisomerase IV subunit B signature 461 482 2.9E-31 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 176 8.2E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1226 db3367f6980a69f18c2d828babda7b91 657 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 584 647 1.1E-22 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 Pfam PF00204 DNA gyrase B 226 398 4.0E-37 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 Pfam PF01751 Toprim domain 426 540 5.9E-13 T 11-10-2018 IPR006171 TOPRIM domain dqs_1226 db3367f6980a69f18c2d828babda7b91 657 SUPERFAMILY SSF56719 401 648 4.18E-74 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 655 43.516 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 Gene3D G3DSA:3.40.50.670 403 650 7.1E-83 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_1226 db3367f6980a69f18c2d828babda7b91 657 SMART SM00387 28 178 1.0E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3668 28bd5b6c8a3de5e0ddbb633fdb221fc5 254 Gene3D G3DSA:3.40.50.150 34 190 8.9E-21 T 11-10-2018 dqs_3668 28bd5b6c8a3de5e0ddbb633fdb221fc5 254 SUPERFAMILY SSF53335 29 240 4.43E-24 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3668 28bd5b6c8a3de5e0ddbb633fdb221fc5 254 Pfam PF13649 Methyltransferase domain 77 171 7.4E-10 T 11-10-2018 dqs_3432 76cca87ffe99a643d5a5a6a7a553757f 299 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 14 296 19.372 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 dqs_3432 76cca87ffe99a643d5a5a6a7a553757f 299 Gene3D G3DSA:1.10.357.140 23 193 4.9E-16 T 11-10-2018 dqs_3432 76cca87ffe99a643d5a5a6a7a553757f 299 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 70 92 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site dqs_3432 76cca87ffe99a643d5a5a6a7a553757f 299 Pfam PF01040 UbiA prenyltransferase family 31 279 2.9E-58 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 dqs_3432 76cca87ffe99a643d5a5a6a7a553757f 299 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 17 294 2.4E-93 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 Gene3D G3DSA:2.30.30.30 118 195 5.4E-31 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 SMART SM01383 42 118 2.5E-42 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 7.1E-55 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 Gene3D G3DSA:4.10.950.10 196 274 5.2E-36 T 11-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 PIRSF PIRSF002158 7 275 1.2E-101 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.588 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 273 1.3E-129 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 11-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 Gene3D G3DSA:2.40.50.140 1 114 1.1E-45 T 11-10-2018 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 SMART SM01382 124 252 2.2E-89 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 dqs_3553 2245fa14725f2fe569b66c4587b30423 275 SUPERFAMILY SSF50249 3 125 2.33E-47 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_3553 2245fa14725f2fe569b66c4587b30423 275 SUPERFAMILY SSF50104 127 272 1.68E-60 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily dqs_3553 2245fa14725f2fe569b66c4587b30423 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.4E-32 T 11-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1664 4cc2a05770d1600f16b416c95b1f8057 204 Pfam PF00043 Glutathione S-transferase, C-terminal domain 115 192 7.2E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal dqs_1664 4cc2a05770d1600f16b416c95b1f8057 204 SUPERFAMILY SSF47616 80 201 1.31E-21 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_1664 4cc2a05770d1600f16b416c95b1f8057 204 Gene3D G3DSA:3.40.30.10 2 199 8.0E-63 T 11-10-2018 dqs_1664 4cc2a05770d1600f16b416c95b1f8057 204 Gene3D G3DSA:1.20.1050.10 83 191 8.0E-63 T 11-10-2018 dqs_1664 4cc2a05770d1600f16b416c95b1f8057 204 Pfam PF13409 Glutathione S-transferase, N-terminal domain 13 74 9.6E-8 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_1664 4cc2a05770d1600f16b416c95b1f8057 204 SUPERFAMILY SSF52833 1 83 4.12E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2895 ad81d0ddb0cc4f7a7cd8c4413e0e109c 142 SUPERFAMILY SSF52161 1 140 1.27E-58 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_2895 ad81d0ddb0cc4f7a7cd8c4413e0e109c 142 PIRSF PIRSF002181 1 142 1.8E-46 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 dqs_2895 ad81d0ddb0cc4f7a7cd8c4413e0e109c 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 5 141 1.4E-59 T 11-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_2895 ad81d0ddb0cc4f7a7cd8c4413e0e109c 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 27.562 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 dqs_2895 ad81d0ddb0cc4f7a7cd8c4413e0e109c 142 Pfam PF00572 Ribosomal protein L13 15 138 1.0E-53 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 dqs_2895 ad81d0ddb0cc4f7a7cd8c4413e0e109c 142 Gene3D G3DSA:3.90.1180.10 1 142 4.5E-60 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 117 1.8E-48 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 SUPERFAMILY SSF50104 1 120 7.02E-45 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 Gene3D G3DSA:2.30.30.790 2 121 2.1E-16 T 11-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 118 30.469 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 Pfam PF01245 Ribosomal protein L19 3 117 7.0E-47 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 PRINTS PR00061 Ribosomal protein L19 signature 38 67 3.9E-34 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 PRINTS PR00061 Ribosomal protein L19 signature 8 37 3.9E-34 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 PRINTS PR00061 Ribosomal protein L19 signature 92 117 3.9E-34 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 PIRSF PIRSF002191 1 128 1.4E-51 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3041 42c5237bd9c3127201ba6298ef72c2c4 128 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 11-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3672 543b24225ec5ac13cc1f86593ab67a8c 271 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 5 255 1.7E-95 T 11-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 dqs_3672 543b24225ec5ac13cc1f86593ab67a8c 271 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 211 4.4E-44 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 dqs_3672 543b24225ec5ac13cc1f86593ab67a8c 271 SUPERFAMILY SSF53790 1 255 1.07E-62 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 dqs_3672 543b24225ec5ac13cc1f86593ab67a8c 271 Gene3D G3DSA:3.40.1010.10 2 112 2.3E-27 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 dqs_3672 543b24225ec5ac13cc1f86593ab67a8c 271 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 78 111 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 dqs_3672 543b24225ec5ac13cc1f86593ab67a8c 271 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 dqs_3672 543b24225ec5ac13cc1f86593ab67a8c 271 Gene3D G3DSA:3.30.950.10 113 233 2.3E-42 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 51 496 7.4E-134 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 Gene3D G3DSA:1.20.210.10 34 555 2.4E-177 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 271 325 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 115 139 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 269 290 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 41 66 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 189 207 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 315 330 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 218 237 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 452 473 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 88 111 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 157 169 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 374 392 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 339 360 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 PRINTS PR01165 Cytochrome c oxidase subunit I signature 402 421 8.8E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 SUPERFAMILY SSF81442 39 548 7.85E-156 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 43 547 7.5E-213 T 11-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 dqs_1907 6520861cf0b2a005fac8e657c2ede159 860 SUPERFAMILY SSF81452 591 835 4.01E-9 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1946 dd2567c85248e392ec12536190703df0 404 SUPERFAMILY SSF53448 5 356 2.58E-67 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1946 dd2567c85248e392ec12536190703df0 404 Gene3D G3DSA:3.90.550.10 3 285 5.6E-76 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1946 dd2567c85248e392ec12536190703df0 404 SUPERFAMILY SSF51161 310 398 1.03E-14 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_1946 dd2567c85248e392ec12536190703df0 404 Gene3D G3DSA:2.160.10.10 287 403 6.4E-30 T 11-10-2018 dqs_1946 dd2567c85248e392ec12536190703df0 404 Pfam PF00483 Nucleotidyl transferase 9 274 4.7E-56 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 dqs_1946 dd2567c85248e392ec12536190703df0 404 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 99 107 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 dqs_1946 dd2567c85248e392ec12536190703df0 404 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 13 32 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 dqs_1946 dd2567c85248e392ec12536190703df0 404 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 197 207 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 dqs_1946 dd2567c85248e392ec12536190703df0 404 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 4 403 41.921 T 11-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 dqs_2917 227021d6145e7220a38f5dfd77992e5a 122 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 14 109 1.1E-21 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis dqs_2917 227021d6145e7220a38f5dfd77992e5a 122 SUPERFAMILY SSF53146 5 112 1.44E-29 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_2917 227021d6145e7220a38f5dfd77992e5a 122 Gene3D G3DSA:3.30.420.130 1 119 8.1E-30 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 SMART SM00465 23 104 2.0E-19 T 11-10-2018 IPR000305 GIY-YIG endonuclease dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 SMART SM00278 585 604 13.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 SMART SM00278 553 572 1.5 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 Gene3D G3DSA:3.30.420.340 376 549 4.5E-49 T 11-10-2018 IPR038476 UvrC homology region 2 superfamily dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 Hamap MF_00203 UvrABC system protein C [uvrC]. 10 604 26.896 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 Pfam PF14520 Helix-hairpin-helix domain 554 606 1.5E-7 T 11-10-2018 dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 Pfam PF02151 UvrB/uvrC motif 210 243 3.1E-9 T 11-10-2018 IPR001943 UVR domain GO:0005515 dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 SUPERFAMILY SSF47781 518 606 9.85E-22 T 11-10-2018 IPR010994 RuvA domain 2-like dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 Gene3D G3DSA:3.40.1440.10 11 108 1.3E-31 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 15 586 5.9E-169 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 384 539 9.3E-49 T 11-10-2018 IPR001162 UvrC family homology region dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 SUPERFAMILY SSF46600 197 248 5.62E-11 T 11-10-2018 IPR036876 UVR domain superfamily dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 Pfam PF01541 GIY-YIG catalytic domain 24 99 1.2E-8 T 11-10-2018 IPR000305 GIY-YIG endonuclease dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 SUPERFAMILY SSF82771 24 106 6.8E-22 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 dqs_1773 3c46f740d98a97b42e4c2009d18351ab 606 Gene3D G3DSA:1.10.150.20 552 606 2.5E-21 T 11-10-2018 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 841 19.828 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Gene3D G3DSA:3.40.50.300 419 629 1.5E-87 T 11-10-2018 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 SMART SM00958 228 360 1.9E-75 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Pfam PF07516 SecA Wing and Scaffold domain 626 839 1.1E-66 T 11-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Pfam PF07517 SecA DEAD-like domain 6 403 1.2E-129 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 SMART SM00957 6 404 0.0 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 PRINTS PR00906 SecA protein signature 101 115 2.9E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 PRINTS PR00906 SecA protein signature 341 363 2.9E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 PRINTS PR00906 SecA protein signature 170 190 2.9E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 PRINTS PR00906 SecA protein signature 117 127 2.9E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 PRINTS PR00906 SecA protein signature 415 428 2.9E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 PRINTS PR00906 SecA protein signature 63 87 2.9E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 PRINTS PR00906 SecA protein signature 378 395 2.9E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Gene3D G3DSA:3.90.1440.10 229 370 2.2E-174 T 11-10-2018 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 SUPERFAMILY SSF52540 418 627 4.3E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0964 4b6c50c24a66371fbde219896932e58c 909 ProSitePatterns PS01312 SecA family signature. 502 517 - T 11-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Gene3D G3DSA:3.40.50.300 23 417 2.2E-174 T 11-10-2018 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 SUPERFAMILY SSF81767 227 370 1.57E-42 T 11-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 826 0.0 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Gene3D G3DSA:1.10.3060.10 630 842 3.0E-73 T 11-10-2018 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Gene3D G3DSA:3.10.450.50 847 908 5.3E-9 T 11-10-2018 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Pfam PF01043 SecA preprotein cross-linking domain 232 360 2.9E-36 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 dqs_0964 4b6c50c24a66371fbde219896932e58c 909 Pfam PF02810 SEC-C motif 889 907 1.8E-10 T 11-10-2018 IPR004027 SEC-C motif dqs_0964 4b6c50c24a66371fbde219896932e58c 909 SUPERFAMILY SSF81886 629 897 4.58E-84 T 11-10-2018 IPR036266 SecA, Wing/Scaffold superfamily dqs_0964 4b6c50c24a66371fbde219896932e58c 909 SUPERFAMILY SSF52540 5 417 3.0E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1817 ca2e884e1be0fb0101f4666f5c1b5662 238 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1817 ca2e884e1be0fb0101f4666f5c1b5662 238 SMART SM00382 43 231 2.7E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1817 ca2e884e1be0fb0101f4666f5c1b5662 238 Pfam PF00005 ABC transporter 34 180 5.8E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1817 ca2e884e1be0fb0101f4666f5c1b5662 238 Gene3D G3DSA:3.40.50.300 10 237 1.8E-68 T 11-10-2018 dqs_1817 ca2e884e1be0fb0101f4666f5c1b5662 238 SUPERFAMILY SSF52540 13 233 1.52E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0923 a6844cd4d3d957f0379831b91bf580f1 335 Gene3D G3DSA:3.40.50.720 4 316 5.9E-97 T 11-10-2018 dqs_0923 a6844cd4d3d957f0379831b91bf580f1 335 Gene3D G3DSA:3.90.25.10 180 328 5.9E-97 T 11-10-2018 dqs_0923 a6844cd4d3d957f0379831b91bf580f1 335 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 9.3E-29 T 11-10-2018 dqs_0923 a6844cd4d3d957f0379831b91bf580f1 335 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 9.3E-29 T 11-10-2018 dqs_0923 a6844cd4d3d957f0379831b91bf580f1 335 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 9.3E-29 T 11-10-2018 dqs_0923 a6844cd4d3d957f0379831b91bf580f1 335 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 9.3E-29 T 11-10-2018 dqs_0923 a6844cd4d3d957f0379831b91bf580f1 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 261 3.1E-57 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 dqs_0923 a6844cd4d3d957f0379831b91bf580f1 335 SUPERFAMILY SSF51735 1 333 2.63E-92 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 SUPERFAMILY SSF110921 391 500 8.89E-28 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 5 498 6.6E-221 T 11-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 Gene3D G3DSA:3.30.160.270 394 501 2.1E-13 T 11-10-2018 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 Pfam PF08502 LeuA allosteric (dimerisation) domain 370 500 2.5E-39 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 SUPERFAMILY SSF51569 1 291 2.56E-99 T 11-10-2018 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 510 43.851 T 11-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 SMART SM00917 370 501 2.7E-46 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 Gene3D G3DSA:1.10.238.260 280 393 2.1E-37 T 11-10-2018 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 Gene3D G3DSA:3.20.20.70 2 276 2.9E-108 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3294 8bc041df4c7726f3c79802bdcd7b228d 511 Pfam PF00682 HMGL-like 5 273 1.0E-98 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 dqs_2982 93be6bcecd8598e76144cd0cd20a4f99 354 Gene3D G3DSA:3.20.20.70 1 354 1.4E-153 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2982 93be6bcecd8598e76144cd0cd20a4f99 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 dqs_2982 93be6bcecd8598e76144cd0cd20a4f99 354 PIRSF PIRSF001359 1 329 2.5E-86 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 dqs_2982 93be6bcecd8598e76144cd0cd20a4f99 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 6.9E-192 T 11-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 dqs_2982 93be6bcecd8598e76144cd0cd20a4f99 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 328 1.2E-95 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 dqs_2982 93be6bcecd8598e76144cd0cd20a4f99 354 SUPERFAMILY SSF51569 3 329 7.47E-109 T 11-10-2018 dqs_2982 93be6bcecd8598e76144cd0cd20a4f99 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 4.1E-100 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 dqs_2982 93be6bcecd8598e76144cd0cd20a4f99 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 1.9E-27 T 11-10-2018 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 2.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 2.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 2.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 2.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 Gene3D G3DSA:1.10.150.240 16 80 2.4E-52 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 4 184 1.3E-15 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_2792 c0116a4c0835c220c1883614c65a8316 224 Gene3D G3DSA:3.40.50.1000 4 186 2.4E-52 T 11-10-2018 IPR023214 HAD superfamily dqs_2792 c0116a4c0835c220c1883614c65a8316 224 SUPERFAMILY SSF56784 1 196 7.31E-49 T 11-10-2018 IPR036412 HAD-like superfamily dqs_0471 84672ae312b360a36f193a1c1e0563b7 204 SUPERFAMILY SSF51206 15 141 1.44E-19 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_0471 84672ae312b360a36f193a1c1e0563b7 204 SUPERFAMILY SSF46785 141 201 1.46E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0471 84672ae312b360a36f193a1c1e0563b7 204 Pfam PF00027 Cyclic nucleotide-binding domain 28 111 5.1E-13 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_0471 84672ae312b360a36f193a1c1e0563b7 204 Pfam PF13545 Crp-like helix-turn-helix domain 146 197 2.2E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_0471 84672ae312b360a36f193a1c1e0563b7 204 Gene3D G3DSA:2.60.120.10 11 140 9.0E-20 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_0471 84672ae312b360a36f193a1c1e0563b7 204 Gene3D G3DSA:1.10.10.10 141 202 2.5E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3387 a0cb60e5459df23ac5fa603a73d72177 285 Pfam PF12146 Serine aminopeptidase, S33 49 143 1.3E-9 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 dqs_3387 a0cb60e5459df23ac5fa603a73d72177 285 Gene3D G3DSA:3.40.50.1820 12 281 1.2E-25 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3387 a0cb60e5459df23ac5fa603a73d72177 285 TIGRFAM TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1 5 277 8.3E-94 T 11-10-2018 IPR017531 Hydrolase, ortholog 1, exosortase system type 1 associated dqs_3387 a0cb60e5459df23ac5fa603a73d72177 285 SUPERFAMILY SSF53474 13 278 1.27E-25 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2919 6bbe3e0607572e05b844be0d88cc193b 363 Gene3D G3DSA:3.50.50.60 91 358 1.2E-45 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2919 6bbe3e0607572e05b844be0d88cc193b 363 Gene3D G3DSA:3.50.50.60 1 90 2.2E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2919 6bbe3e0607572e05b844be0d88cc193b 363 Pfam PF01593 Flavin containing amine oxidoreductase 103 349 1.5E-22 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 dqs_2919 6bbe3e0607572e05b844be0d88cc193b 363 Pfam PF01593 Flavin containing amine oxidoreductase 11 85 3.4E-18 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 dqs_2919 6bbe3e0607572e05b844be0d88cc193b 363 SUPERFAMILY SSF54373 198 298 2.51E-17 T 11-10-2018 dqs_2919 6bbe3e0607572e05b844be0d88cc193b 363 SUPERFAMILY SSF51905 3 348 4.26E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 SUPERFAMILY SSF46785 8 113 6.51E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 Gene3D G3DSA:1.10.10.10 1 86 2.8E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 Gene3D G3DSA:3.40.190.10 93 301 1.1E-79 T 11-10-2018 dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 Gene3D G3DSA:3.40.190.10 167 268 1.1E-79 T 11-10-2018 dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 Pfam PF03466 LysR substrate binding domain 92 295 1.5E-43 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 64 2.2E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2457 62a7c704cb867eddb049a4da80fc4ba1 318 SUPERFAMILY SSF53850 93 295 2.06E-42 T 11-10-2018 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 SUPERFAMILY SSF54534 292 391 5.76E-31 T 11-10-2018 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 Pfam PF00639 PPIC-type PPIASE domain 186 280 3.9E-18 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 Gene3D G3DSA:1.10.4030.30 35 284 1.6E-71 T 11-10-2018 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 Hamap MF_01183 Chaperone SurA [surA]. 11 437 35.108 T 11-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 Gene3D G3DSA:3.10.50.40 180 282 1.6E-71 T 11-10-2018 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 Gene3D G3DSA:3.10.50.40 289 429 1.6E-39 T 11-10-2018 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 Pfam PF09312 SurA N-terminal domain 34 151 2.7E-40 T 11-10-2018 IPR015391 SurA N-terminal dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 Pfam PF13616 PPIC-type PPIASE domain 293 392 2.2E-23 T 11-10-2018 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 331 351 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 SUPERFAMILY SSF109998 34 209 2.16E-43 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily dqs_3026 1d10aa421f53957825b6ba6292122f2e 439 SUPERFAMILY SSF54534 180 283 2.09E-25 T 11-10-2018 dqs_0258 f1592ace3cf4bf5012b367569fdef197 400 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 297 3.5E-11 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_0258 f1592ace3cf4bf5012b367569fdef197 400 SUPERFAMILY SSF111369 55 304 6.41E-88 T 11-10-2018 dqs_0258 f1592ace3cf4bf5012b367569fdef197 400 Gene3D G3DSA:2.40.420.20 308 377 1.5E-113 T 11-10-2018 dqs_0258 f1592ace3cf4bf5012b367569fdef197 400 Gene3D G3DSA:2.40.30.170 54 307 1.5E-113 T 11-10-2018 dqs_0258 f1592ace3cf4bf5012b367569fdef197 400 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 380 4.8E-85 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_0258 f1592ace3cf4bf5012b367569fdef197 400 Gene3D G3DSA:1.10.287.470 102 175 1.5E-113 T 11-10-2018 dqs_0258 f1592ace3cf4bf5012b367569fdef197 400 Gene3D G3DSA:2.40.50.100 67 211 1.5E-113 T 11-10-2018 dqs_2528 b6bc1cb7337351ab7ee35a6fc888ed85 326 Pfam PF03459 TOBE domain 243 307 1.2E-6 T 11-10-2018 IPR005116 Transport-associated OB, type 1 dqs_2528 b6bc1cb7337351ab7ee35a6fc888ed85 326 Pfam PF00005 ABC transporter 18 154 3.7E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2528 b6bc1cb7337351ab7ee35a6fc888ed85 326 SMART SM00382 27 204 2.8E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2528 b6bc1cb7337351ab7ee35a6fc888ed85 326 SUPERFAMILY SSF50331 241 313 2.67E-11 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_2528 b6bc1cb7337351ab7ee35a6fc888ed85 326 Gene3D G3DSA:2.40.50.100 240 309 3.2E-12 T 11-10-2018 dqs_2528 b6bc1cb7337351ab7ee35a6fc888ed85 326 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2528 b6bc1cb7337351ab7ee35a6fc888ed85 326 SUPERFAMILY SSF52540 3 214 1.12E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2528 b6bc1cb7337351ab7ee35a6fc888ed85 326 Gene3D G3DSA:3.40.50.300 1 214 6.3E-68 T 11-10-2018 dqs_2890 d2c85ee68c8df2fff7c2e49f4fd738b0 271 Gene3D G3DSA:3.40.50.1860 101 213 3.9E-89 T 11-10-2018 dqs_2890 d2c85ee68c8df2fff7c2e49f4fd738b0 271 SUPERFAMILY SSF53681 116 268 3.27E-41 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_2890 d2c85ee68c8df2fff7c2e49f4fd738b0 271 Gene3D G3DSA:3.40.50.1860 11 260 3.9E-89 T 11-10-2018 dqs_2890 d2c85ee68c8df2fff7c2e49f4fd738b0 271 Pfam PF01177 Asp/Glu/Hydantoin racemase 11 219 1.3E-32 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_2890 d2c85ee68c8df2fff7c2e49f4fd738b0 271 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 186 196 - T 11-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_2890 d2c85ee68c8df2fff7c2e49f4fd738b0 271 Hamap MF_00258 Glutamate racemase [murI]. 9 262 36.017 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_2890 d2c85ee68c8df2fff7c2e49f4fd738b0 271 TIGRFAM TIGR00067 glut_race: glutamate racemase 11 258 1.3E-67 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_2890 d2c85ee68c8df2fff7c2e49f4fd738b0 271 SUPERFAMILY SSF53681 10 112 1.54E-32 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_0990 e9f367744b59e53df843135784cafcaa 663 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 301 424 9.3E-26 T 11-10-2018 IPR000014 PAS domain dqs_0990 e9f367744b59e53df843135784cafcaa 663 SUPERFAMILY SSF55874 508 661 2.1E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0990 e9f367744b59e53df843135784cafcaa 663 Gene3D G3DSA:3.30.450.20 285 447 1.0E-26 T 11-10-2018 dqs_0990 e9f367744b59e53df843135784cafcaa 663 SMART SM00091 303 370 3.9E-6 T 11-10-2018 IPR000014 PAS domain dqs_0990 e9f367744b59e53df843135784cafcaa 663 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 662 1.0E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0990 e9f367744b59e53df843135784cafcaa 663 SUPERFAMILY SSF55785 290 417 1.5E-24 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0990 e9f367744b59e53df843135784cafcaa 663 PRINTS PR00344 Bacterial sensor protein C-terminal signature 612 622 1.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0990 e9f367744b59e53df843135784cafcaa 663 PRINTS PR00344 Bacterial sensor protein C-terminal signature 594 608 1.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0990 e9f367744b59e53df843135784cafcaa 663 PRINTS PR00344 Bacterial sensor protein C-terminal signature 647 660 1.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0990 e9f367744b59e53df843135784cafcaa 663 PRINTS PR00344 Bacterial sensor protein C-terminal signature 623 641 1.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0990 e9f367744b59e53df843135784cafcaa 663 SMART SM00086 377 419 1.6E-6 T 11-10-2018 IPR001610 PAC motif dqs_0990 e9f367744b59e53df843135784cafcaa 663 SUPERFAMILY SSF47384 434 508 9.02E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0990 e9f367744b59e53df843135784cafcaa 663 Gene3D G3DSA:1.10.287.130 448 508 7.1E-21 T 11-10-2018 dqs_0990 e9f367744b59e53df843135784cafcaa 663 SMART SM00388 441 511 1.4E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0990 e9f367744b59e53df843135784cafcaa 663 Pfam PF00512 His Kinase A (phospho-acceptor) domain 442 508 1.9E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0990 e9f367744b59e53df843135784cafcaa 663 SMART SM00387 553 663 1.7E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0990 e9f367744b59e53df843135784cafcaa 663 Pfam PF00989 PAS fold 305 416 1.4E-19 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_0990 e9f367744b59e53df843135784cafcaa 663 Gene3D G3DSA:3.30.565.10 510 663 2.2E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2874 61a59d40280f44a2881dd93b65ffde1c 146 Pfam PF00460 Flagella basal body rod protein 7 32 4.3E-8 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 dqs_2874 61a59d40280f44a2881dd93b65ffde1c 146 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 146 1.4E-50 T 11-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 dqs_2874 61a59d40280f44a2881dd93b65ffde1c 146 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 99 144 4.2E-15 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain dqs_2874 61a59d40280f44a2881dd93b65ffde1c 146 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site dqs_0949 3cdb0d5f3651a64dc70185c17d8e6118 586 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 214 1.5E-21 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 dqs_0949 3cdb0d5f3651a64dc70185c17d8e6118 586 Gene3D G3DSA:3.90.1310.30 60 228 1.0E-47 T 11-10-2018 dqs_0949 3cdb0d5f3651a64dc70185c17d8e6118 586 Gene3D G3DSA:3.40.710.10 290 473 1.2E-114 T 11-10-2018 dqs_0949 3cdb0d5f3651a64dc70185c17d8e6118 586 SUPERFAMILY SSF56519 63 228 4.45E-46 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 dqs_0949 3cdb0d5f3651a64dc70185c17d8e6118 586 Gene3D G3DSA:3.30.450.330 231 555 1.2E-114 T 11-10-2018 dqs_0949 3cdb0d5f3651a64dc70185c17d8e6118 586 SUPERFAMILY SSF56601 181 564 1.71E-93 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_0949 3cdb0d5f3651a64dc70185c17d8e6118 586 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 19 566 43.832 T 11-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_0949 3cdb0d5f3651a64dc70185c17d8e6118 586 Pfam PF00905 Penicillin binding protein transpeptidase domain 254 551 8.0E-77 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 dqs_0519 966038cb4fd62acca6af00b216596c92 160 SUPERFAMILY SSF101307 7 154 3.66E-36 T 11-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 dqs_0519 966038cb4fd62acca6af00b216596c92 160 Pfam PF04608 Phosphatidylglycerophosphatase A 13 154 1.7E-48 T 11-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 dqs_0519 966038cb4fd62acca6af00b216596c92 160 PIRSF PIRSF006162 4 160 2.7E-43 T 11-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 dqs_0331 a5c33a1a05ce03208ccb97b74e59761f 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 18 152 4.5E-50 T 11-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0331 a5c33a1a05ce03208ccb97b74e59761f 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 14 155 28.421 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0331 a5c33a1a05ce03208ccb97b74e59761f 156 SUPERFAMILY SSF52121 10 155 9.68E-54 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0331 a5c33a1a05ce03208ccb97b74e59761f 156 Gene3D G3DSA:3.40.50.960 7 155 2.9E-54 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0331 a5c33a1a05ce03208ccb97b74e59761f 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 19 151 7.3E-42 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_2722 89d7eb64e2e1b40a3ec4890d02f0a0b2 128 Pfam PF03640 Secreted repeat of unknown function 84 127 9.7E-21 T 11-10-2018 IPR005297 Lipoprotein repeat dqs_2722 89d7eb64e2e1b40a3ec4890d02f0a0b2 128 Pfam PF03640 Secreted repeat of unknown function 34 72 6.4E-14 T 11-10-2018 IPR005297 Lipoprotein repeat dqs_2722 89d7eb64e2e1b40a3ec4890d02f0a0b2 128 PIRSF PIRSF029720 1 128 3.0E-48 T 11-10-2018 IPR014558 Uncharacterised conserved lipoprotein dqs_3134 cf738493de14cd6308bdd68005a7fa5f 376 SUPERFAMILY SSF55729 8 139 7.21E-17 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3134 cf738493de14cd6308bdd68005a7fa5f 376 Gene3D G3DSA:3.40.630.30 3 163 7.6E-21 T 11-10-2018 dqs_3134 cf738493de14cd6308bdd68005a7fa5f 376 Gene3D G3DSA:3.40.50.1820 176 364 1.3E-26 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3134 cf738493de14cd6308bdd68005a7fa5f 376 SUPERFAMILY SSF53474 168 364 3.81E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3134 cf738493de14cd6308bdd68005a7fa5f 376 Pfam PF00583 Acetyltransferase (GNAT) family 55 135 7.2E-10 T 11-10-2018 IPR000182 GNAT domain dqs_3134 cf738493de14cd6308bdd68005a7fa5f 376 Pfam PF12697 Alpha/beta hydrolase family 186 352 7.1E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_0174 929445009c9ad4e10311760c108d55de 423 Gene3D G3DSA:1.10.287.130 185 256 2.0E-24 T 11-10-2018 dqs_0174 929445009c9ad4e10311760c108d55de 423 Pfam PF11808 Domain of unknown function (DUF3329) 2 66 4.7E-9 T 11-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 dqs_0174 929445009c9ad4e10311760c108d55de 423 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 302 410 7.1E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0174 929445009c9ad4e10311760c108d55de 423 Pfam PF00512 His Kinase A (phospho-acceptor) domain 188 256 1.6E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0174 929445009c9ad4e10311760c108d55de 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 390 8.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0174 929445009c9ad4e10311760c108d55de 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 365 8.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0174 929445009c9ad4e10311760c108d55de 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 409 8.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0174 929445009c9ad4e10311760c108d55de 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 351 8.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0174 929445009c9ad4e10311760c108d55de 423 SMART SM00387 300 412 4.1E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0174 929445009c9ad4e10311760c108d55de 423 Gene3D G3DSA:3.30.565.10 265 417 3.9E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0174 929445009c9ad4e10311760c108d55de 423 Gene3D G3DSA:3.30.450.20 71 184 7.7E-7 T 11-10-2018 dqs_0174 929445009c9ad4e10311760c108d55de 423 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 78 408 2.6E-127 T 11-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 dqs_0174 929445009c9ad4e10311760c108d55de 423 SUPERFAMILY SSF55785 72 173 4.49E-7 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0174 929445009c9ad4e10311760c108d55de 423 SUPERFAMILY SSF47384 175 256 1.22E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0174 929445009c9ad4e10311760c108d55de 423 SUPERFAMILY SSF55874 245 412 1.7E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0174 929445009c9ad4e10311760c108d55de 423 SMART SM00388 188 256 8.1E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2949 d54d21fb7f1f2318fef0a53c4e602a37 138 Gene3D G3DSA:3.40.250.10 37 138 4.8E-32 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2949 d54d21fb7f1f2318fef0a53c4e602a37 138 Pfam PF00581 Rhodanese-like domain 39 128 3.3E-21 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2949 d54d21fb7f1f2318fef0a53c4e602a37 138 SMART SM00450 35 132 1.1E-27 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2949 d54d21fb7f1f2318fef0a53c4e602a37 138 SUPERFAMILY SSF52821 20 135 9.3E-36 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2206 65efd71df4b97cb1b3c067e9e145b1ae 417 Gene3D G3DSA:1.10.3210.10 28 331 3.3E-44 T 11-10-2018 dqs_2206 65efd71df4b97cb1b3c067e9e145b1ae 417 Pfam PF13487 HD domain 221 280 1.1E-13 T 11-10-2018 dqs_2206 65efd71df4b97cb1b3c067e9e145b1ae 417 Pfam PF11871 Domain of unknown function (DUF3391) 2 125 8.7E-21 T 11-10-2018 IPR021812 Protein of unknown function DUF3391 dqs_2206 65efd71df4b97cb1b3c067e9e145b1ae 417 SUPERFAMILY SSF109604 163 329 1.91E-24 T 11-10-2018 dqs_2206 65efd71df4b97cb1b3c067e9e145b1ae 417 SMART SM00471 164 299 1.7E-6 T 11-10-2018 IPR003607 HD/PDEase domain dqs_4059 08c602f7264f8892fbd4da07112520bb 434 Gene3D G3DSA:1.20.1530.20 22 424 5.4E-95 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily dqs_4059 08c602f7264f8892fbd4da07112520bb 434 Pfam PF00999 Sodium/hydrogen exchanger family 29 418 2.1E-54 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 dqs_1288 84890864ac47451327d1b2581033d843 843 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 280 4.9E-53 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_1288 84890864ac47451327d1b2581033d843 843 SUPERFAMILY SSF51905 145 304 6.34E-28 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00397 Sirohaem Fe-binding site signature 675 693 1.4E-6 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00397 Sirohaem Fe-binding site signature 632 650 1.4E-6 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_1288 84890864ac47451327d1b2581033d843 843 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 675 691 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_1288 84890864ac47451327d1b2581033d843 843 Gene3D G3DSA:3.50.50.60 106 241 6.8E-86 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1288 84890864ac47451327d1b2581033d843 843 PIRSF PIRSF037149 1 831 0.0 T 11-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 dqs_1288 84890864ac47451327d1b2581033d843 843 SUPERFAMILY SSF56014 629 803 2.09E-48 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 556 618 5.7E-12 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 6.7E-9 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 6.7E-9 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 230 244 6.7E-9 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 6.7E-9 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 628 747 3.3E-15 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_1288 84890864ac47451327d1b2581033d843 843 Gene3D G3DSA:3.30.413.10 627 788 9.2E-33 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 Pfam PF04324 BFD-like [2Fe-2S] binding domain 420 467 1.3E-10 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain dqs_1288 84890864ac47451327d1b2581033d843 843 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 3 796 0.0 T 11-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 3.3E-17 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 3.3E-17 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 245 3.3E-17 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 3.3E-17 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 3.3E-17 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 SUPERFAMILY SSF55124 498 637 1.05E-26 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 dqs_1288 84890864ac47451327d1b2581033d843 843 Gene3D G3DSA:1.10.10.1100 419 473 4.1E-11 T 11-10-2018 dqs_1288 84890864ac47451327d1b2581033d843 843 Gene3D G3DSA:3.50.50.60 4 278 6.8E-86 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1288 84890864ac47451327d1b2581033d843 843 SUPERFAMILY SSF51905 1 188 4.97E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1221 735f91f467a1c88d193cde50b66f6bff 279 Gene3D G3DSA:3.30.1330.60 90 255 8.3E-48 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_1221 735f91f467a1c88d193cde50b66f6bff 279 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 5 57 2.7E-22 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain dqs_1221 735f91f467a1c88d193cde50b66f6bff 279 SUPERFAMILY SSF103088 133 246 6.15E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_1221 735f91f467a1c88d193cde50b66f6bff 279 Pfam PF00691 OmpA family 142 240 1.6E-19 T 11-10-2018 IPR006665 OmpA-like domain dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PIRSF PIRSF000099 9 436 1.3E-158 T 11-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 Gene3D G3DSA:3.40.50.1980 36 238 1.3E-128 T 11-10-2018 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 434 40.487 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 433 8.7E-159 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 Gene3D G3DSA:3.40.50.1980 240 356 1.3E-128 T 11-10-2018 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PRINTS PR00083 Histidinol dehydrogenase signature 143 169 1.9E-82 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 1.9E-82 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PRINTS PR00083 Histidinol dehydrogenase signature 207 232 1.9E-82 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PRINTS PR00083 Histidinol dehydrogenase signature 327 352 1.9E-82 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PRINTS PR00083 Histidinol dehydrogenase signature 236 257 1.9E-82 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PRINTS PR00083 Histidinol dehydrogenase signature 368 386 1.9E-82 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PRINTS PR00083 Histidinol dehydrogenase signature 258 277 1.9E-82 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 PRINTS PR00083 Histidinol dehydrogenase signature 177 203 1.9E-82 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 SUPERFAMILY SSF53720 33 434 9.42E-86 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 Pfam PF00815 Histidinol dehydrogenase 30 434 3.0E-165 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 dqs_0888 18ecf089351b9c40a591682df6a4d7fd 436 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 236 268 - T 11-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 Gene3D G3DSA:3.50.7.10 192 372 9.0E-233 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 SUPERFAMILY SSF52029 184 376 6.73E-79 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 Gene3D G3DSA:3.30.260.10 136 410 9.0E-233 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 SUPERFAMILY SSF48592 7 521 9.92E-77 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 1.5E-100 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 SUPERFAMILY SSF54849 137 203 7.33E-23 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 542 40.791 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 7.8E-250 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 Gene3D G3DSA:1.10.560.10 8 521 9.0E-233 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 PRINTS PR00298 60kDa chaperonin signature 398 419 5.9E-71 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 PRINTS PR00298 60kDa chaperonin signature 268 291 5.9E-71 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 PRINTS PR00298 60kDa chaperonin signature 83 110 5.9E-71 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 PRINTS PR00298 60kDa chaperonin signature 27 53 5.9E-71 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_2496 b993f1cd28cb925b5215f3a30c28d680 547 PRINTS PR00298 60kDa chaperonin signature 350 375 5.9E-71 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_3645 ae9cd8d205ec4a37914c7da268287acf 233 Hamap MF_01385 Urease accessory protein UreF [ureF]. 10 233 33.982 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 dqs_3645 ae9cd8d205ec4a37914c7da268287acf 233 Pfam PF01730 UreF 42 190 7.0E-47 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 dqs_3645 ae9cd8d205ec4a37914c7da268287acf 233 PIRSF PIRSF009467 8 233 7.9E-67 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 dqs_3645 ae9cd8d205ec4a37914c7da268287acf 233 Gene3D G3DSA:1.10.4190.10 10 211 4.4E-60 T 11-10-2018 IPR038277 UreF domain superfamily dqs_3697 eb2754f8d91f172b8b34391cda40318e 326 SUPERFAMILY SSF81345 4 323 5.1E-75 T 11-10-2018 IPR037294 ABC transporter, BtuC-like dqs_3697 eb2754f8d91f172b8b34391cda40318e 326 Gene3D G3DSA:1.10.3470.10 4 326 2.3E-92 T 11-10-2018 IPR037294 ABC transporter, BtuC-like dqs_3697 eb2754f8d91f172b8b34391cda40318e 326 Pfam PF01032 FecCD transport family 19 323 5.8E-87 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 dqs_1368 7d0babb3d07eb972b744318837f44f7b 389 SUPERFAMILY SSF50952 28 383 3.14E-50 T 11-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 dqs_1368 7d0babb3d07eb972b744318837f44f7b 389 Pfam PF07995 Glucose / Sorbosone dehydrogenase 51 380 2.5E-135 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase dqs_1368 7d0babb3d07eb972b744318837f44f7b 389 Gene3D G3DSA:2.120.10.30 37 383 4.2E-121 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 Pfam PF01012 Electron transfer flavoprotein domain 4 166 7.5E-40 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 SUPERFAMILY SSF52467 188 308 1.76E-47 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 PIRSF PIRSF000089 1 310 7.6E-109 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 272 4.7E-35 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 Gene3D G3DSA:3.40.50.1220 183 310 2.3E-57 T 11-10-2018 dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 SUPERFAMILY SSF52402 3 183 1.26E-55 T 11-10-2018 dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 Gene3D G3DSA:3.40.50.620 2 182 3.6E-55 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1850 037c9aadc62bdd63974dfe0a5b987ca2 310 SMART SM00893 3 181 6.2E-55 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 SMART SM00116 217 265 0.48 T 11-10-2018 IPR000644 CBS domain dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 SMART SM00116 282 330 0.019 T 11-10-2018 IPR000644 CBS domain dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 Gene3D G3DSA:3.40.50.10490 11 202 8.1E-67 T 11-10-2018 dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 Gene3D G3DSA:3.10.580.10 203 328 1.1E-41 T 11-10-2018 dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 SUPERFAMILY SSF53697 15 326 1.6E-66 T 11-10-2018 dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 Pfam PF00571 CBS domain 276 328 8.6E-8 T 11-10-2018 IPR000644 CBS domain dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 Pfam PF00571 CBS domain 208 265 1.8E-6 T 11-10-2018 IPR000644 CBS domain dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 Pfam PF01380 SIS domain 48 179 9.4E-34 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 PIRSF PIRSF004692 5 331 3.6E-127 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 dqs_0864 95e3b34e4b7e70ff309812e421dfd650 331 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 52 320 2.5E-103 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 dqs_2880 4a94b15912e71ed363dceba838652b33 252 SMART SM00862 163 239 5.3E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_2880 4a94b15912e71ed363dceba838652b33 252 SUPERFAMILY SSF52172 4 134 1.57E-43 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2880 4a94b15912e71ed363dceba838652b33 252 SMART SM00448 6 119 3.2E-43 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2880 4a94b15912e71ed363dceba838652b33 252 Gene3D G3DSA:3.40.50.2300 1 134 1.5E-39 T 11-10-2018 dqs_2880 4a94b15912e71ed363dceba838652b33 252 Gene3D G3DSA:1.10.10.10 135 244 2.4E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2880 4a94b15912e71ed363dceba838652b33 252 SUPERFAMILY SSF46894 138 240 1.87E-23 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_2880 4a94b15912e71ed363dceba838652b33 252 Pfam PF00486 Transcriptional regulatory protein, C terminal 164 239 5.5E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_2880 4a94b15912e71ed363dceba838652b33 252 Pfam PF00072 Response regulator receiver domain 8 119 2.0E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 SMART SM00487 74 261 5.6E-22 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 Gene3D G3DSA:3.40.50.300 257 437 6.7E-53 T 11-10-2018 dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 639 723 2.0E-13 T 11-10-2018 IPR011709 Domain of unknown function DUF1605 dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 Gene3D G3DSA:1.20.120.1080 464 562 1.8E-17 T 11-10-2018 dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 SMART SM00490 319 420 2.2E-9 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 14 1040 0.0 T 11-10-2018 IPR010222 RNA helicase HrpA GO:0004004 dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 Gene3D G3DSA:3.40.50.300 34 256 5.3E-73 T 11-10-2018 dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 SMART SM00382 91 386 6.9E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 Pfam PF11898 Domain of unknown function (DUF3418) 738 1356 2.0E-192 T 11-10-2018 IPR024590 RNA helicase HrpA, C-terminal dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 Pfam PF04408 Helicase associated domain (HA2) 483 570 1.5E-16 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 Pfam PF00271 Helicase conserved C-terminal domain 304 419 7.7E-9 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 SUPERFAMILY SSF52540 73 606 7.87E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0785 d72f97661029c7282f44ce3c31526d85 1360 SMART SM00847 480 576 1.2E-33 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 70 191 7.3E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 Gene3D G3DSA:3.40.50.1000 9 196 7.8E-62 T 11-10-2018 IPR023214 HAD superfamily dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 6 221 36.361 T 11-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 2.0E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 2.0E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 2.0E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 180 193 2.0E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 2.0E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 191 1.3E-38 T 11-10-2018 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 SUPERFAMILY SSF56784 6 218 2.59E-59 T 11-10-2018 IPR036412 HAD-like superfamily dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 Gene3D G3DSA:1.10.150.240 21 90 7.8E-62 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 9 218 2.2E-66 T 11-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 dqs_3464 3f05d9391ba636ece22a4f3bfcd94d41 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 185 2.2E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_0673 709c99f123cf0b318462a2154d9d692d 84 Gene3D G3DSA:2.30.30.90 9 84 6.9E-8 T 11-10-2018 IPR038157 Ferrous iron transporter, core domain dqs_0673 709c99f123cf0b318462a2154d9d692d 84 Pfam PF04023 FeoA domain 13 83 9.1E-8 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 dqs_0673 709c99f123cf0b318462a2154d9d692d 84 SMART SM00899 12 83 2.2E-8 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 dqs_0673 709c99f123cf0b318462a2154d9d692d 84 SUPERFAMILY SSF50037 17 82 2.15E-9 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal dqs_2836 37cea52fbb97a96c9b92d5b9e5b827e6 416 Gene3D G3DSA:3.40.50.12580 208 400 2.6E-40 T 11-10-2018 dqs_2836 37cea52fbb97a96c9b92d5b9e5b827e6 416 Gene3D G3DSA:3.40.50.11820 35 407 2.6E-40 T 11-10-2018 dqs_2836 37cea52fbb97a96c9b92d5b9e5b827e6 416 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 36 413 1.2E-47 T 11-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 dqs_2836 37cea52fbb97a96c9b92d5b9e5b827e6 416 SUPERFAMILY SSF53756 190 407 2.83E-9 T 11-10-2018 dqs_0733 dd92f6e716b1dade433e8b88386e5c5d 588 SUPERFAMILY SSF53474 6 282 9.13E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0733 dd92f6e716b1dade433e8b88386e5c5d 588 SUPERFAMILY SSF53335 391 572 1.55E-18 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0733 dd92f6e716b1dade433e8b88386e5c5d 588 Pfam PF12146 Serine aminopeptidase, S33 30 266 6.9E-68 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 dqs_0733 dd92f6e716b1dade433e8b88386e5c5d 588 Pfam PF12147 Putative methyltransferase 274 585 1.0E-157 T 11-10-2018 IPR022744 Methyltransferase domain, putative dqs_0733 dd92f6e716b1dade433e8b88386e5c5d 588 Gene3D G3DSA:3.40.50.150 341 587 1.1E-16 T 11-10-2018 dqs_0733 dd92f6e716b1dade433e8b88386e5c5d 588 Gene3D G3DSA:3.40.50.1820 3 287 1.9E-50 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0798 b7d9cff4c6e8347d2f3832f8e871c245 241 Pfam PF10411 Disulfide bond isomerase protein N-terminus 34 85 1.8E-15 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal dqs_0798 b7d9cff4c6e8347d2f3832f8e871c245 241 SUPERFAMILY SSF52833 95 236 3.56E-34 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0798 b7d9cff4c6e8347d2f3832f8e871c245 241 SUPERFAMILY SSF54423 42 84 9.42E-7 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 dqs_0798 b7d9cff4c6e8347d2f3832f8e871c245 241 Pfam PF13098 Thioredoxin-like domain 113 235 1.0E-32 T 11-10-2018 IPR012336 Thioredoxin-like fold dqs_0798 b7d9cff4c6e8347d2f3832f8e871c245 241 Gene3D G3DSA:3.40.30.10 105 239 1.2E-35 T 11-10-2018 dqs_0798 b7d9cff4c6e8347d2f3832f8e871c245 241 ProSitePatterns PS00194 Thioredoxin family active site. 121 139 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Gene3D G3DSA:1.10.220.120 40 102 1.5E-26 T 11-10-2018 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 SUPERFAMILY SSF88659 499 572 1.29E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Gene3D G3DSA:1.10.10.10 499 574 7.7E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 SUPERFAMILY SSF88946 155 493 6.59E-100 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Pfam PF04542 Sigma-70 region 2 428 495 7.1E-21 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 PRINTS PR00046 Major sigma-70 factor signature 474 482 4.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 PRINTS PR00046 Major sigma-70 factor signature 634 645 4.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 PRINTS PR00046 Major sigma-70 factor signature 619 634 4.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 PRINTS PR00046 Major sigma-70 factor signature 450 463 4.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 PRINTS PR00046 Major sigma-70 factor signature 598 610 4.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 619 645 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Pfam PF04546 Sigma-70, non-essential region 179 395 9.8E-67 T 11-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 422 658 3.3E-119 T 11-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 422 647 2.6E-38 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Gene3D G3DSA:1.10.10.10 576 660 4.8E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 450 463 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Pfam PF04545 Sigma-70, region 4 594 647 1.1E-19 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Pfam PF04539 Sigma-70 region 3 505 580 7.9E-25 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Pfam PF00140 Sigma-70 factor, region 1.2 138 170 1.3E-13 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 SUPERFAMILY SSF88659 556 658 1.31E-26 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 42 659 43.636 T 11-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Gene3D G3DSA:1.10.601.10 153 495 8.0E-133 T 11-10-2018 dqs_3364 b45ba8c4a65777ff626879ea3bf514f8 662 Pfam PF03979 Sigma-70 factor, region 1.1 43 120 2.3E-27 T 11-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 dqs_4011 1c8e1e1ea9aab74f97f79acbd3368cff 336 Pfam PF00676 Dehydrogenase E1 component 53 326 1.2E-76 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 dqs_4011 1c8e1e1ea9aab74f97f79acbd3368cff 336 SUPERFAMILY SSF52518 3 336 7.63E-86 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_4011 1c8e1e1ea9aab74f97f79acbd3368cff 336 Gene3D G3DSA:3.40.50.970 1 336 2.5E-111 T 11-10-2018 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 SUPERFAMILY SSF55347 164 327 2.08E-55 T 11-10-2018 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 SUPERFAMILY SSF51735 11 178 7.53E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 PIRSF PIRSF000149 8 347 2.4E-123 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 Gene3D G3DSA:3.30.360.10 163 328 1.9E-116 T 11-10-2018 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 SMART SM00846 10 164 3.4E-65 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 11 112 3.4E-31 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 Gene3D G3DSA:3.40.50.720 11 338 1.9E-116 T 11-10-2018 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 170 325 4.0E-47 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 242 259 1.0E-21 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 158 176 1.0E-21 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 282 297 1.0E-21 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 185 201 1.0E-21 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2562 ba9c302f4f9d4fd2479592ba2a3d6b06 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 119 132 1.0E-21 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1004 9b9bd86722c84c21c0f55eb5eaa3fd7a 80 SUPERFAMILY SSF50182 8 70 7.89E-24 T 11-10-2018 IPR010920 LSM domain superfamily dqs_1004 9b9bd86722c84c21c0f55eb5eaa3fd7a 80 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 8 65 7.1E-29 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 dqs_1004 9b9bd86722c84c21c0f55eb5eaa3fd7a 80 Pfam PF17209 Hfq protein 8 69 1.4E-31 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 dqs_1004 9b9bd86722c84c21c0f55eb5eaa3fd7a 80 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 65 27.867 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 dqs_1004 9b9bd86722c84c21c0f55eb5eaa3fd7a 80 Gene3D G3DSA:2.30.30.100 1 77 1.8E-33 T 11-10-2018 dqs_0967 c879459ee027d1f9a65b6bb5ebc76556 276 Pfam PF13672 Protein phosphatase 2C 13 208 2.1E-13 T 11-10-2018 dqs_0967 c879459ee027d1f9a65b6bb5ebc76556 276 Gene3D G3DSA:3.60.40.10 5 246 4.1E-51 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_0967 c879459ee027d1f9a65b6bb5ebc76556 276 SMART SM00331 19 244 2.1E-11 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_0967 c879459ee027d1f9a65b6bb5ebc76556 276 SMART SM00332 2 242 4.2E-10 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_0967 c879459ee027d1f9a65b6bb5ebc76556 276 SUPERFAMILY SSF81606 7 243 9.94E-50 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_0698 111123161880ea6f8247f483b2a329d7 198 SUPERFAMILY SSF103088 95 197 3.53E-25 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_0698 111123161880ea6f8247f483b2a329d7 198 Gene3D G3DSA:3.30.1330.60 91 198 1.3E-25 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_0698 111123161880ea6f8247f483b2a329d7 198 Pfam PF00691 OmpA family 96 191 7.3E-16 T 11-10-2018 IPR006665 OmpA-like domain dqs_0698 111123161880ea6f8247f483b2a329d7 198 PRINTS PR01021 OMPA domain signature 142 158 1.4E-6 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_0698 111123161880ea6f8247f483b2a329d7 198 PRINTS PR01021 OMPA domain signature 97 119 1.4E-6 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_0698 111123161880ea6f8247f483b2a329d7 198 PRINTS PR01021 OMPA domain signature 127 142 1.4E-6 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 SUPERFAMILY SSF46785 23 166 1.02E-33 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 108 3.0E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 128 3.0E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 142 162 3.0E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 92 3.0E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 Pfam PF12802 MarR family 59 116 2.6E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 ProSitePatterns PS01117 MarR-type HTH domain signature. 91 125 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 SMART SM00347 51 152 2.6E-24 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2152 1a99ee9df2e414555d7a4f381eae2577 174 Gene3D G3DSA:1.10.10.10 16 169 1.6E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2856 ec28644c3e9fbecb0008936c169efd6c 366 Gene3D G3DSA:3.30.750.140 224 336 3.2E-31 T 11-10-2018 IPR038610 FliK-like, C-terminal domain superfamily dqs_2856 ec28644c3e9fbecb0008936c169efd6c 366 Pfam PF02120 Flagellar hook-length control protein FliK 244 326 1.5E-22 T 11-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal dqs_0736 a71406ce0abd6eb1f57d1d43c0c6ae7b 207 SMART SM00563 35 156 1.9E-13 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0736 a71406ce0abd6eb1f57d1d43c0c6ae7b 207 Pfam PF01553 Acyltransferase 24 153 2.8E-17 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0736 a71406ce0abd6eb1f57d1d43c0c6ae7b 207 SUPERFAMILY SSF69593 15 181 6.67E-31 T 11-10-2018 dqs_1437 ab35fd092c275720b11ef63229ea088e 250 SUPERFAMILY SSF53335 21 180 7.64E-14 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1437 ab35fd092c275720b11ef63229ea088e 250 Pfam PF13489 Methyltransferase domain 29 109 1.3E-7 T 11-10-2018 dqs_1437 ab35fd092c275720b11ef63229ea088e 250 Gene3D G3DSA:3.40.50.150 1 125 2.8E-13 T 11-10-2018 dqs_3810 4a15cb2c864966f198d14bae32700283 752 SMART SM00448 37 159 3.1E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3810 4a15cb2c864966f198d14bae32700283 752 Pfam PF00072 Response regulator receiver domain 39 155 9.6E-8 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3810 4a15cb2c864966f198d14bae32700283 752 Pfam PF00990 Diguanylate cyclase, GGDEF domain 332 421 3.0E-10 T 11-10-2018 IPR000160 GGDEF domain dqs_3810 4a15cb2c864966f198d14bae32700283 752 Gene3D G3DSA:3.20.20.450 497 749 6.3E-86 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3810 4a15cb2c864966f198d14bae32700283 752 SUPERFAMILY SSF52172 38 184 1.85E-14 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3810 4a15cb2c864966f198d14bae32700283 752 SMART SM00267 320 484 6.9E-5 T 11-10-2018 IPR000160 GGDEF domain dqs_3810 4a15cb2c864966f198d14bae32700283 752 Pfam PF00563 EAL domain 500 735 3.2E-64 T 11-10-2018 IPR001633 EAL domain dqs_3810 4a15cb2c864966f198d14bae32700283 752 SMART SM00052 494 740 1.6E-99 T 11-10-2018 IPR001633 EAL domain dqs_3810 4a15cb2c864966f198d14bae32700283 752 SUPERFAMILY SSF55073 340 486 7.85E-14 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3810 4a15cb2c864966f198d14bae32700283 752 SUPERFAMILY SSF141868 500 747 5.36E-80 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3810 4a15cb2c864966f198d14bae32700283 752 Gene3D G3DSA:3.30.70.270 325 496 1.8E-17 T 11-10-2018 dqs_3810 4a15cb2c864966f198d14bae32700283 752 Gene3D G3DSA:3.40.50.2300 37 185 3.9E-15 T 11-10-2018 dqs_3810 4a15cb2c864966f198d14bae32700283 752 Pfam PF11849 Domain of unknown function (DUF3369) 159 327 1.0E-41 T 11-10-2018 IPR021800 Domain of unknown function DUF3369 dqs_1936 24461cbd80e7e15d7200e1bf22aa6a98 303 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 14 161 9.5E-17 T 11-10-2018 IPR018763 Protein of unknown function DUF2334 dqs_1936 24461cbd80e7e15d7200e1bf22aa6a98 303 Gene3D G3DSA:3.20.20.370 28 246 1.4E-6 T 11-10-2018 dqs_1936 24461cbd80e7e15d7200e1bf22aa6a98 303 SUPERFAMILY SSF88713 27 209 7.79E-10 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 dqs_2326 99863caacf44e5d8e8c2f34595985cc6 423 Gene3D G3DSA:3.90.1150.10 289 423 1.6E-48 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2326 99863caacf44e5d8e8c2f34595985cc6 423 Gene3D G3DSA:3.40.640.10 1 285 1.4E-104 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2326 99863caacf44e5d8e8c2f34595985cc6 423 SUPERFAMILY SSF53383 1 421 1.6E-129 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2326 99863caacf44e5d8e8c2f34595985cc6 423 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 2 420 1.2E-199 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 dqs_2326 99863caacf44e5d8e8c2f34595985cc6 423 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_2326 99863caacf44e5d8e8c2f34595985cc6 423 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 420 2.6E-139 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_2326 99863caacf44e5d8e8c2f34595985cc6 423 PIRSF PIRSF001434 1 423 1.1E-128 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 SMART SM00534 614 801 5.5E-110 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Pfam PF01624 MutS domain I 14 125 1.6E-40 T 11-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Pfam PF05190 MutS family domain IV 436 527 3.5E-30 T 11-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 SUPERFAMILY SSF53150 120 271 1.07E-36 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Gene3D G3DSA:3.30.420.110 134 266 6.2E-30 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Gene3D G3DSA:3.40.1170.10 5 127 2.4E-49 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 SUPERFAMILY SSF48334 272 573 1.7E-84 T 11-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Gene3D G3DSA:1.10.1420.10 394 511 1.3E-96 T 11-10-2018 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Pfam PF00488 MutS domain V 618 804 1.2E-81 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 SUPERFAMILY SSF55271 8 121 1.31E-42 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Pfam PF05192 MutS domain III 274 567 2.8E-35 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Gene3D G3DSA:1.10.1420.10 271 567 1.3E-96 T 11-10-2018 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 SUPERFAMILY SSF52540 575 805 4.91E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 PIRSF PIRSF037677 226 818 9.4E-120 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 PIRSF PIRSF037677 5 209 7.8E-25 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 13 852 24.428 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 SMART SM00533 288 599 2.5E-91 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 695 711 - T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Pfam PF05188 MutS domain II 144 257 2.4E-22 T 11-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 Gene3D G3DSA:3.40.50.300 576 822 1.8E-96 T 11-10-2018 dqs_2178 5c289a807a71ffe38d90eb964f14a0bb 861 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 13 857 0.0 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 Gene3D G3DSA:3.40.50.720 161 439 9.2E-86 T 11-10-2018 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 SMART SM01274 18 151 4.5E-75 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 PIRSF PIRSF036684 1 761 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 SUPERFAMILY SSF51735 163 439 5.55E-88 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 Gene3D G3DSA:3.40.50.10950 442 756 1.4E-91 T 11-10-2018 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 1.4E-25 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 Pfam PF01515 Phosphate acetyl/butaryl transferase 429 753 6.8E-97 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 SUPERFAMILY SSF53659 429 756 2.06E-91 T 11-10-2018 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 2.2E-22 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 Gene3D G3DSA:3.40.50.10380 1 160 1.0E-67 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 PRINTS PR00072 Malic enzyme signature 190 206 1.7E-5 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 PRINTS PR00072 Malic enzyme signature 159 175 1.7E-5 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 PRINTS PR00072 Malic enzyme signature 80 102 1.7E-5 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 SMART SM00919 163 400 4.3E-146 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 11-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 SUPERFAMILY SSF53223 10 161 3.31E-51 T 11-10-2018 dqs_3348 592e37c5d6884da8259cc3fea61510e3 762 Gene3D G3DSA:3.40.50.10750 575 729 1.4E-91 T 11-10-2018 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 Pfam PF00206 Lyase 13 337 6.1E-92 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 Pfam PF10415 Fumarase C C-terminus 403 455 4.1E-20 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 SUPERFAMILY SSF48557 6 453 1.88E-139 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 Gene3D G3DSA:1.10.40.30 403 454 4.2E-21 T 11-10-2018 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 PRINTS PR00149 Fumarate lyase superfamily signature 312 328 2.4E-28 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 PRINTS PR00149 Fumarate lyase superfamily signature 266 293 2.4E-28 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 PRINTS PR00149 Fumarate lyase superfamily signature 129 147 2.4E-28 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 PRINTS PR00149 Fumarate lyase superfamily signature 175 193 2.4E-28 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 Hamap MF_00743 Fumarate hydratase class II [fumC]. 5 457 75.639 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 PRINTS PR00145 Argininosuccinate lyase family signature 128 150 5.4E-5 T 11-10-2018 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 PRINTS PR00145 Argininosuccinate lyase family signature 312 328 5.4E-5 T 11-10-2018 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 PRINTS PR00145 Argininosuccinate lyase family signature 170 190 5.4E-5 T 11-10-2018 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 Gene3D G3DSA:1.10.275.10 6 133 4.7E-49 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 ProSitePatterns PS00163 Fumarate lyases signature. 312 321 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 dqs_0767 c075bf43a76c8d8047bc1ba8e9097290 459 Gene3D G3DSA:1.20.200.10 134 402 5.3E-99 T 11-10-2018 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 SMART SM00304 323 375 2.3E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 695 2.4E-20 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 722 735 2.4E-20 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 667 681 2.4E-20 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 PRINTS PR00344 Bacterial sensor protein C-terminal signature 698 716 2.4E-20 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 Gene3D G3DSA:1.10.287.130 407 584 1.5E-15 T 11-10-2018 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 SMART SM00387 630 738 6.8E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 633 737 1.1E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 Gene3D G3DSA:3.30.450.20 168 303 3.8E-5 T 11-10-2018 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 Gene3D G3DSA:3.30.565.10 591 740 1.3E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 SUPERFAMILY SSF55874 593 736 6.94E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 SUPERFAMILY SSF47384 426 489 1.51E-6 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0145 b902cb2acc459c8ad9dcc00921eb2db2 740 SUPERFAMILY SSF158472 323 372 5.75E-5 T 11-10-2018 dqs_3910 9e1e1494db027a64b3d9feec2b07d01e 150 Pfam PF01814 Hemerythrin HHE cation binding domain 17 128 2.5E-11 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_3910 9e1e1494db027a64b3d9feec2b07d01e 150 ProSitePatterns PS00550 Hemerythrin family signature. 62 85 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 dqs_3910 9e1e1494db027a64b3d9feec2b07d01e 150 SUPERFAMILY SSF47188 6 131 5.23E-35 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_3910 9e1e1494db027a64b3d9feec2b07d01e 150 Gene3D G3DSA:1.20.120.50 3 137 2.8E-39 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_3910 9e1e1494db027a64b3d9feec2b07d01e 150 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 9 131 9.3E-38 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 dqs_1297 3500f8bb510c7bd208cae7f3cf783c30 116 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 3 116 1.2E-38 T 11-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 dqs_1297 3500f8bb510c7bd208cae7f3cf783c30 116 SUPERFAMILY SSF49472 2 116 8.76E-42 T 11-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 dqs_1297 3500f8bb510c7bd208cae7f3cf783c30 116 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 11-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 dqs_1297 3500f8bb510c7bd208cae7f3cf783c30 116 Pfam PF00576 HIUase/Transthyretin family 4 115 2.1E-35 T 11-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 dqs_1297 3500f8bb510c7bd208cae7f3cf783c30 116 Gene3D G3DSA:2.60.40.180 1 116 6.1E-42 T 11-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 dqs_1297 3500f8bb510c7bd208cae7f3cf783c30 116 ProSitePatterns PS00769 Transthyretin signature 2. 99 111 - T 11-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 dqs_1359 920f6d478d4eb3073b21faa8104d4880 173 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 18 148 2.6E-43 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 dqs_1359 920f6d478d4eb3073b21faa8104d4880 173 Gene3D G3DSA:3.40.50.300 11 162 9.3E-43 T 11-10-2018 dqs_1359 920f6d478d4eb3073b21faa8104d4880 173 SUPERFAMILY SSF52540 34 137 2.66E-22 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1359 920f6d478d4eb3073b21faa8104d4880 173 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 19 142 2.8E-37 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 dqs_3671 8f67eba134c9eb3606b636a8d547e43a 208 Gene3D G3DSA:1.10.1760.20 1 196 4.4E-12 T 11-10-2018 dqs_3671 8f67eba134c9eb3606b636a8d547e43a 208 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 192 1.7E-29 T 11-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 dqs_2237 95c91fc51d1297686c0281769b904253 300 Gene3D G3DSA:2.30.130.10 240 298 1.9E-6 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 dqs_2237 95c91fc51d1297686c0281769b904253 300 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 241 294 3.2E-15 T 11-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2237 95c91fc51d1297686c0281769b904253 300 Gene3D G3DSA:3.30.2350.10 2 239 5.5E-95 T 11-10-2018 dqs_2237 95c91fc51d1297686c0281769b904253 300 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 180 237 1.3E-16 T 11-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 dqs_2237 95c91fc51d1297686c0281769b904253 300 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 294 19.776 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2237 95c91fc51d1297686c0281769b904253 300 SUPERFAMILY SSF55120 9 240 5.35E-84 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2237 95c91fc51d1297686c0281769b904253 300 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 10 218 1.0E-83 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2237 95c91fc51d1297686c0281769b904253 300 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 179 1.5E-59 T 11-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 dqs_2237 95c91fc51d1297686c0281769b904253 300 SUPERFAMILY SSF88697 240 295 1.34E-5 T 11-10-2018 IPR015947 PUA-like superfamily dqs_3721 03fbccfd3dceb47ff685b89a38f41702 376 SUPERFAMILY SSF53756 5 362 9.03E-67 T 11-10-2018 dqs_3721 03fbccfd3dceb47ff685b89a38f41702 376 Gene3D G3DSA:3.40.50.2000 65 354 9.5E-54 T 11-10-2018 dqs_3721 03fbccfd3dceb47ff685b89a38f41702 376 Pfam PF13439 Glycosyltransferase Family 4 36 170 5.5E-8 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3721 03fbccfd3dceb47ff685b89a38f41702 376 Pfam PF00534 Glycosyl transferases group 1 182 325 5.8E-33 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_3721 03fbccfd3dceb47ff685b89a38f41702 376 Gene3D G3DSA:3.40.50.2000 167 351 9.5E-54 T 11-10-2018 dqs_1308 3695158668fb7314900b8c836a9b1efe 373 PIRSF PIRSF009283 1 366 9.0E-121 T 11-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 dqs_1308 3695158668fb7314900b8c836a9b1efe 373 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 7 154 4.6E-65 T 11-10-2018 dqs_1308 3695158668fb7314900b8c836a9b1efe 373 Gene3D G3DSA:3.10.180.10 4 163 1.2E-54 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1308 3695158668fb7314900b8c836a9b1efe 373 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 175 286 4.7E-16 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_1308 3695158668fb7314900b8c836a9b1efe 373 Gene3D G3DSA:3.10.180.10 170 366 1.9E-66 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1308 3695158668fb7314900b8c836a9b1efe 373 SUPERFAMILY SSF54593 7 352 2.22E-85 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1308 3695158668fb7314900b8c836a9b1efe 373 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 15 365 1.1E-116 T 11-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 dqs_3124 a079f674ba02475f0e3b35a8586670ac 186 Gene3D G3DSA:3.40.50.360 2 185 2.1E-64 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_3124 a079f674ba02475f0e3b35a8586670ac 186 Pfam PF03358 NADPH-dependent FMN reductase 8 153 1.4E-42 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 dqs_3124 a079f674ba02475f0e3b35a8586670ac 186 SUPERFAMILY SSF52218 8 178 3.14E-55 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_3127 6dc3dca801b2c90fa94cc3131b53992d 298 PIRSF PIRSF006232 2 291 2.2E-90 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 dqs_3127 6dc3dca801b2c90fa94cc3131b53992d 298 SUPERFAMILY SSF51182 1 287 2.84E-85 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3127 6dc3dca801b2c90fa94cc3131b53992d 298 Pfam PF02678 Pirin 22 127 8.5E-33 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 dqs_3127 6dc3dca801b2c90fa94cc3131b53992d 298 Pfam PF05726 Pirin C-terminal cupin domain 182 284 3.1E-30 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 dqs_3127 6dc3dca801b2c90fa94cc3131b53992d 298 Gene3D G3DSA:2.60.120.10 17 279 8.5E-84 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3127 6dc3dca801b2c90fa94cc3131b53992d 298 Gene3D G3DSA:2.60.120.10 149 253 8.5E-84 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 ProSitePatterns PS00099 Thiolases active site. 383 396 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 Gene3D G3DSA:3.40.47.10 8 283 4.0E-156 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 SUPERFAMILY SSF53901 5 277 1.37E-82 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 Gene3D G3DSA:3.40.47.10 142 398 4.0E-156 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 SUPERFAMILY SSF53901 278 401 2.35E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 Pfam PF02803 Thiolase, C-terminal domain 278 401 3.9E-42 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 4 402 1.1E-225 T 11-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 Pfam PF00108 Thiolase, N-terminal domain 5 269 2.8E-77 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 PIRSF PIRSF000429 1 402 4.3E-133 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 400 4.9E-136 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_3193 757041e8c3448788efb9814a7bafd8c7 402 ProSitePatterns PS00737 Thiolases signature 2. 348 364 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 dqs_2099 05a16eaecd5f5281c71d28e09e6a8c8a 376 SUPERFAMILY SSF51679 15 370 9.16E-84 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 dqs_2099 05a16eaecd5f5281c71d28e09e6a8c8a 376 Pfam PF00296 Luciferase-like monooxygenase 19 338 8.3E-74 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 dqs_2099 05a16eaecd5f5281c71d28e09e6a8c8a 376 Gene3D G3DSA:3.20.20.30 15 368 1.1E-81 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 dqs_3173 a449a3c9874fe53b20995193513db170 571 Pfam PF10531 SLBB domain 396 445 2.4E-7 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 Gene3D G3DSA:1.20.1440.230 482 570 5.1E-23 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 Gene3D G3DSA:1.10.10.1590 22 88 5.7E-10 T 11-10-2018 dqs_3173 a449a3c9874fe53b20995193513db170 571 SUPERFAMILY SSF140490 485 558 1.44E-23 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 Gene3D G3DSA:3.40.50.11540 212 382 8.0E-60 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 Gene3D G3DSA:3.40.30.10 97 179 6.3E-9 T 11-10-2018 dqs_3173 a449a3c9874fe53b20995193513db170 571 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 37 164 4.3E-24 T 11-10-2018 dqs_3173 a449a3c9874fe53b20995193513db170 571 SUPERFAMILY SSF52833 26 187 3.21E-35 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3173 a449a3c9874fe53b20995193513db170 571 Gene3D G3DSA:3.10.20.600 385 478 1.2E-23 T 11-10-2018 dqs_3173 a449a3c9874fe53b20995193513db170 571 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 495 506 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 SMART SM00928 482 527 2.7E-17 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 316 331 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 210 367 7.0E-38 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 485 559 8.0E-22 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 SUPERFAMILY SSF142019 174 375 2.62E-59 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3173 a449a3c9874fe53b20995193513db170 571 SUPERFAMILY SSF142984 394 476 2.48E-20 T 11-10-2018 dqs_1906 26354b2aab40d0becbdec75ffb7b68bf 223 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 19 217 3.0E-47 T 11-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1906 26354b2aab40d0becbdec75ffb7b68bf 223 SUPERFAMILY SSF49503 104 219 1.73E-43 T 11-10-2018 IPR008972 Cupredoxin dqs_1906 26354b2aab40d0becbdec75ffb7b68bf 223 Gene3D G3DSA:2.60.40.2600 106 223 3.8E-49 T 11-10-2018 dqs_1906 26354b2aab40d0becbdec75ffb7b68bf 223 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 134 207 1.5E-18 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1906 26354b2aab40d0becbdec75ffb7b68bf 223 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 153 201 - T 11-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3315 60733abd7a3b4cbed336e86e627b5fc1 191 Gene3D G3DSA:1.20.1440.20 15 185 1.1E-49 T 11-10-2018 IPR023353 LemA-like domain superfamily dqs_3315 60733abd7a3b4cbed336e86e627b5fc1 191 SUPERFAMILY SSF140478 26 175 9.94E-46 T 11-10-2018 IPR023353 LemA-like domain superfamily dqs_3315 60733abd7a3b4cbed336e86e627b5fc1 191 Pfam PF04011 LemA family 8 185 4.5E-57 T 11-10-2018 IPR007156 LemA dqs_2343 479f38cabb363fcc36a0d88c9ba4f22a 338 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 77 96 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 dqs_2343 479f38cabb363fcc36a0d88c9ba4f22a 338 Pfam PF01180 Dihydroorotate dehydrogenase 44 329 4.6E-85 T 11-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 dqs_2343 479f38cabb363fcc36a0d88c9ba4f22a 338 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 332 8.2E-127 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 dqs_2343 479f38cabb363fcc36a0d88c9ba4f22a 338 SUPERFAMILY SSF51395 1 332 1.47E-101 T 11-10-2018 dqs_2343 479f38cabb363fcc36a0d88c9ba4f22a 338 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 289 309 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 dqs_2343 479f38cabb363fcc36a0d88c9ba4f22a 338 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 333 49.712 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 dqs_2343 479f38cabb363fcc36a0d88c9ba4f22a 338 PIRSF PIRSF000164 11 338 1.5E-89 T 11-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 dqs_2343 479f38cabb363fcc36a0d88c9ba4f22a 338 Gene3D G3DSA:3.20.20.70 2 332 4.4E-129 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1480 cd61877da70439713751c18f7f3e418a 175 SUPERFAMILY SSF50324 6 170 4.32E-64 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 dqs_1480 cd61877da70439713751c18f7f3e418a 175 Gene3D G3DSA:3.90.80.10 1 175 4.0E-66 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 dqs_1480 cd61877da70439713751c18f7f3e418a 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 35.329 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 dqs_1480 cd61877da70439713751c18f7f3e418a 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 dqs_1480 cd61877da70439713751c18f7f3e418a 175 Pfam PF00719 Inorganic pyrophosphatase 18 169 7.7E-51 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 dqs_2278 ff433044f022f4c548d2a5203e86e02f 279 Pfam PF00793 DAHP synthetase I family 8 269 1.3E-67 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 dqs_2278 ff433044f022f4c548d2a5203e86e02f 279 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 13 270 3.2E-124 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 dqs_2278 ff433044f022f4c548d2a5203e86e02f 279 SUPERFAMILY SSF51569 2 272 1.19E-106 T 11-10-2018 dqs_2278 ff433044f022f4c548d2a5203e86e02f 279 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 8 272 53.202 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 dqs_2278 ff433044f022f4c548d2a5203e86e02f 279 Gene3D G3DSA:3.20.20.70 3 277 1.3E-106 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 Gene3D G3DSA:3.30.930.10 118 585 1.9E-194 T 11-10-2018 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 587 33.841 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 586 1.2E-251 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 SUPERFAMILY SSF50249 1 105 1.9E-34 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 Gene3D G3DSA:3.30.1360.30 273 422 1.9E-194 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 Pfam PF02938 GAD domain 309 407 1.3E-28 T 11-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 SUPERFAMILY SSF55261 292 420 1.23E-40 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 9.0E-20 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 PRINTS PR01042 Aspartyl-tRNA synthetase signature 477 493 3.5E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 PRINTS PR01042 Aspartyl-tRNA synthetase signature 521 535 3.5E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 PRINTS PR01042 Aspartyl-tRNA synthetase signature 191 203 3.5E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 221 3.5E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 Gene3D G3DSA:2.40.50.140 1 105 1.3E-35 T 11-10-2018 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 561 3.3E-109 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3376 4b78881f8fbfbf719aabdd44360f6a36 599 SUPERFAMILY SSF55681 110 588 8.76E-109 T 11-10-2018 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 3 111 7.1E-64 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 PRINTS PR01034 Ribosomal protein S12 signature 29 44 2.8E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 PRINTS PR01034 Ribosomal protein S12 signature 97 109 2.8E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 PRINTS PR01034 Ribosomal protein S12 signature 14 29 2.8E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 PRINTS PR01034 Ribosomal protein S12 signature 64 81 2.8E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 PRINTS PR01034 Ribosomal protein S12 signature 45 64 2.8E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 PRINTS PR01034 Ribosomal protein S12 signature 81 97 2.8E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 ProSitePatterns PS00055 Ribosomal protein S12 signature. 30 37 - T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 PIRSF PIRSF002133 2 111 1.5E-52 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 Pfam PF00164 Ribosomal protein S12/S23 4 110 6.8E-43 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 Gene3D G3DSA:2.40.50.140 2 112 2.1E-57 T 11-10-2018 dqs_3561 696b8d746c49859b7f7212af601c0bc2 112 SUPERFAMILY SSF50249 4 111 2.4E-50 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1890 71571d7e6baffed9512452d3d7ea18a9 303 TIGRFAM TIGR02772 Ku_bact: Ku protein 2 263 4.2E-93 T 11-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type dqs_1890 71571d7e6baffed9512452d3d7ea18a9 303 SMART SM00559 53 181 1.7E-34 T 11-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 dqs_1890 71571d7e6baffed9512452d3d7ea18a9 303 Pfam PF02735 Ku70/Ku80 beta-barrel domain 12 192 3.9E-32 T 11-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 dqs_1890 71571d7e6baffed9512452d3d7ea18a9 303 PIRSF PIRSF006493 1 302 1.3E-88 T 11-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type dqs_1890 71571d7e6baffed9512452d3d7ea18a9 303 SUPERFAMILY SSF100939 2 262 1.31E-46 T 11-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily dqs_1890 71571d7e6baffed9512452d3d7ea18a9 303 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 2 261 31.416 T 11-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type dqs_1890 71571d7e6baffed9512452d3d7ea18a9 303 Gene3D G3DSA:2.40.290.10 3 179 4.6E-14 T 11-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily dqs_0905 acbea4cb241d94a91fe345bcd00c1d0e 235 SUPERFAMILY SSF52540 4 222 5.03E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0905 acbea4cb241d94a91fe345bcd00c1d0e 235 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0905 acbea4cb241d94a91fe345bcd00c1d0e 235 Pfam PF00005 ABC transporter 23 171 1.6E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0905 acbea4cb241d94a91fe345bcd00c1d0e 235 Gene3D G3DSA:3.40.50.300 3 230 2.6E-66 T 11-10-2018 dqs_0905 acbea4cb241d94a91fe345bcd00c1d0e 235 SMART SM00382 32 220 1.9E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3439 9ea038b2d7e71741dc91aa719270372c 191 PIRSF PIRSF005413 1 189 4.7E-64 T 11-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3439 9ea038b2d7e71741dc91aa719270372c 191 SUPERFAMILY SSF110111 60 179 7.85E-46 T 11-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3439 9ea038b2d7e71741dc91aa719270372c 191 Gene3D G3DSA:2.60.370.10 58 188 2.8E-45 T 11-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3439 9ea038b2d7e71741dc91aa719270372c 191 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 35 176 2.5E-50 T 11-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 Gene3D G3DSA:3.30.1920.30 222 284 9.7E-122 T 11-10-2018 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 SUPERFAMILY SSF69279 9 181 1.13E-61 T 11-10-2018 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 Gene3D G3DSA:2.40.50.230 352 454 3.9E-48 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 SUPERFAMILY SSF69255 361 449 5.49E-36 T 11-10-2018 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 558 581 2.5E-5 T 11-10-2018 IPR010609 Gp5, C-terminal dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 535 557 4.0E-5 T 11-10-2018 IPR010609 Gp5, C-terminal dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 SUPERFAMILY SSF69349 439 673 2.98E-64 T 11-10-2018 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 Gene3D G3DSA:3.55.50.10 95 186 9.7E-122 T 11-10-2018 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 Gene3D G3DSA:2.30.110.50 11 328 9.7E-122 T 11-10-2018 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 503 2.3E-165 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 Pfam PF05954 Phage late control gene D protein (GPD) 27 326 6.1E-104 T 11-10-2018 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 SUPERFAMILY SSF69279 189 361 1.48E-37 T 11-10-2018 dqs_4020 c196b1423a06a2b0104eaf85f61c75b6 690 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 7 521 3.7E-204 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset dqs_1975 e774f6b67488d86c3bc7892a0a29c13f 445 SUPERFAMILY SSF51735 21 283 2.62E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1975 e774f6b67488d86c3bc7892a0a29c13f 445 Pfam PF13781 DoxX-like family 337 437 1.2E-29 T 11-10-2018 IPR025695 DoxX-like family dqs_1975 e774f6b67488d86c3bc7892a0a29c13f 445 Gene3D G3DSA:3.40.50.720 21 311 1.5E-45 T 11-10-2018 dqs_1975 e774f6b67488d86c3bc7892a0a29c13f 445 Pfam PF13460 NAD(P)H-binding 26 172 3.9E-16 T 11-10-2018 IPR016040 NAD(P)-binding domain dqs_3828 4a88c6fdb3bc10e38334f66459709830 274 SMART SM00346 19 109 3.5E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 dqs_3828 4a88c6fdb3bc10e38334f66459709830 274 SUPERFAMILY SSF55781 86 268 1.05E-33 T 11-10-2018 dqs_3828 4a88c6fdb3bc10e38334f66459709830 274 Pfam PF01614 Bacterial transcriptional regulator 147 265 1.2E-11 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal dqs_3828 4a88c6fdb3bc10e38334f66459709830 274 Gene3D G3DSA:1.10.10.10 4 87 1.3E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3828 4a88c6fdb3bc10e38334f66459709830 274 SUPERFAMILY SSF46785 19 91 8.35E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3828 4a88c6fdb3bc10e38334f66459709830 274 Pfam PF09339 IclR helix-turn-helix domain 21 72 6.6E-10 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 dqs_3828 4a88c6fdb3bc10e38334f66459709830 274 Gene3D G3DSA:3.30.450.40 97 265 2.3E-30 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_2862 4317c5f3e0f9e6f9de22bed447ab156f 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 4.2E-35 T 11-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 dqs_2862 4317c5f3e0f9e6f9de22bed447ab156f 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 8.1E-32 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 dqs_2862 4317c5f3e0f9e6f9de22bed447ab156f 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.0E-22 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 dqs_2862 4317c5f3e0f9e6f9de22bed447ab156f 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.0E-22 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 dqs_2862 4317c5f3e0f9e6f9de22bed447ab156f 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.0E-22 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 dqs_2862 4317c5f3e0f9e6f9de22bed447ab156f 89 PIRSF PIRSF004669 1 89 3.3E-35 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 dqs_0155 6a0a6ddf7c494c2ed70d9248971f8b34 287 Gene3D G3DSA:3.90.1530.30 44 111 1.6E-26 T 11-10-2018 dqs_0155 6a0a6ddf7c494c2ed70d9248971f8b34 287 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 28 207 7.6E-58 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 dqs_0155 6a0a6ddf7c494c2ed70d9248971f8b34 287 SMART SM00470 31 125 3.6E-35 T 11-10-2018 IPR003115 ParB/Sulfiredoxin dqs_0155 6a0a6ddf7c494c2ed70d9248971f8b34 287 SUPERFAMILY SSF110849 32 127 1.39E-27 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily dqs_0155 6a0a6ddf7c494c2ed70d9248971f8b34 287 SUPERFAMILY SSF109709 117 225 6.8E-33 T 11-10-2018 dqs_0155 6a0a6ddf7c494c2ed70d9248971f8b34 287 Gene3D G3DSA:1.10.10.2830 112 225 4.4E-35 T 11-10-2018 dqs_0155 6a0a6ddf7c494c2ed70d9248971f8b34 287 Pfam PF02195 ParB-like nuclease domain 35 125 7.5E-27 T 11-10-2018 IPR003115 ParB/Sulfiredoxin dqs_2536 415948b9641d29fa78f25e1b663099a3 263 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2536 415948b9641d29fa78f25e1b663099a3 263 Gene3D G3DSA:3.40.50.300 5 253 6.7E-66 T 11-10-2018 dqs_2536 415948b9641d29fa78f25e1b663099a3 263 Pfam PF00005 ABC transporter 22 163 1.7E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2536 415948b9641d29fa78f25e1b663099a3 263 SUPERFAMILY SSF52540 7 233 5.2E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2536 415948b9641d29fa78f25e1b663099a3 263 SMART SM00382 31 215 7.5E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2636 a2c70a55fc4897f43b6f4d9a8589bffb 221 Gene3D G3DSA:3.40.50.1240 57 209 4.1E-15 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_2636 a2c70a55fc4897f43b6f4d9a8589bffb 221 SUPERFAMILY SSF53254 60 190 6.64E-10 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_1372 21d76a90bc950fcdc7e570a3091d21ef 211 Gene3D G3DSA:1.10.132.90 56 183 1.7E-57 T 11-10-2018 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 SUPERFAMILY SSF46894 146 212 1.19E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 Gene3D G3DSA:3.40.50.12740 7 212 8.2E-59 T 11-10-2018 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 SMART SM00421 149 206 3.7E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 SMART SM00448 7 119 2.2E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.6E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.6E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.6E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 Pfam PF00072 Response regulator receiver domain 9 119 1.1E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 SUPERFAMILY SSF52172 6 135 3.7E-35 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3115 3af36029ac7e8e50db6f1c816c7fcdb7 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 6.4E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 PIRSF PIRSF001529 1 429 2.4E-179 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 420 1.3E-164 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 SUPERFAMILY SSF46589 1 112 8.89E-29 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 425 39.446 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 224 403 1.4E-35 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 280 293 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 337 353 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 355 371 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 268 280 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 320 333 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 Gene3D G3DSA:3.30.930.10 105 429 2.0E-116 T 11-10-2018 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 Gene3D G3DSA:1.10.287.40 1 104 3.1E-20 T 11-10-2018 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 SUPERFAMILY SSF55681 116 421 4.7E-101 T 11-10-2018 dqs_1491 912e5cc23d60d24f2918a14a126a44de 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 3.7E-29 T 11-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 225 306 1.1E-33 T 11-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 SUPERFAMILY SSF56770 45 308 9.68E-90 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 282 295 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 68 92 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 186 209 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 254 280 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 212 229 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 230 248 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 45 67 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 114 137 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 157 181 4.9E-123 T 11-10-2018 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 14 43 1.3E-6 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 60 205 9.5E-29 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 Gene3D G3DSA:4.10.480.10 227 337 1.9E-49 T 11-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 PIRSF PIRSF000310 3 354 1.0E-143 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 3 350 2.8E-172 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 dqs_3938 237719aa2f8693e2ce04b0fb54813b30 362 Gene3D G3DSA:3.40.50.700 44 224 5.7E-70 T 11-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily dqs_3065 576742e82a71313ffc7bb2d1befacec7 201 Pfam PF05433 Glycine zipper 2TM domain 114 151 4.6E-8 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 Gene3D G3DSA:3.40.1380.20 334 467 4.5E-161 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 SUPERFAMILY SSF52935 321 472 6.02E-36 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 PRINTS PR01050 Pyruvate kinase family signature 60 76 1.1E-59 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 PRINTS PR01050 Pyruvate kinase family signature 311 327 1.1E-59 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 PRINTS PR01050 Pyruvate kinase family signature 185 199 1.1E-59 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 PRINTS PR01050 Pyruvate kinase family signature 292 310 1.1E-59 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 PRINTS PR01050 Pyruvate kinase family signature 215 241 1.1E-59 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 PRINTS PR01050 Pyruvate kinase family signature 267 291 1.1E-59 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 PRINTS PR01050 Pyruvate kinase family signature 242 266 1.1E-59 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 Pfam PF00224 Pyruvate kinase, barrel domain 3 336 7.9E-120 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 SUPERFAMILY SSF51621 2 336 4.54E-95 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 213 225 - T 11-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 Gene3D G3DSA:3.20.20.60 3 333 4.5E-161 T 11-10-2018 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 SUPERFAMILY SSF50800 71 163 7.5E-24 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 471 6.2E-159 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 469 5.2E-27 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_2981 9c765170861507ad5c68f0d4cfcf08a2 480 Gene3D G3DSA:2.40.33.10 71 167 4.5E-161 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 Gene3D G3DSA:3.30.1390.10 55 125 1.1E-30 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 125 25.672 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 SUPERFAMILY SSF48300 4 61 9.81E-17 T 11-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 SUPERFAMILY SSF54736 54 125 1.17E-24 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 60 125 5.0E-25 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 125 6.1E-30 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 52 2.0E-18 T 11-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 Gene3D G3DSA:1.20.5.710 3 54 3.5E-22 T 11-10-2018 dqs_3564 a4fc051758cc900d7bc46b7aed1cd6d6 125 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 1.8E-50 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 266 272 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 Pfam PF12161 HsdM N-terminal domain 8 125 4.2E-13 T 11-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 Gene3D G3DSA:1.20.1260.30 1 91 1.2E-16 T 11-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 Pfam PF02384 N-6 DNA Methylase 139 450 3.5E-96 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 192 206 2.1E-19 T 11-10-2018 dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 263 275 2.1E-19 T 11-10-2018 dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 163 179 2.1E-19 T 11-10-2018 dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 300 324 2.1E-19 T 11-10-2018 dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 Gene3D G3DSA:3.40.50.150 140 434 4.3E-86 T 11-10-2018 dqs_0004 f8524c71eda7392de7e08f38ed270bae 806 SUPERFAMILY SSF53335 6 487 1.67E-119 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2381 f4b4dd9e289bc04c92972fca2b0e1f3f 500 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 300 311 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 dqs_2381 f4b4dd9e289bc04c92972fca2b0e1f3f 500 Gene3D G3DSA:3.40.605.10 34 494 5.5E-191 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_2381 f4b4dd9e289bc04c92972fca2b0e1f3f 500 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 272 279 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_2381 f4b4dd9e289bc04c92972fca2b0e1f3f 500 SUPERFAMILY SSF53720 16 498 1.83E-170 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_2381 f4b4dd9e289bc04c92972fca2b0e1f3f 500 Gene3D G3DSA:3.40.309.10 276 465 5.5E-191 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_2381 f4b4dd9e289bc04c92972fca2b0e1f3f 500 Pfam PF00171 Aldehyde dehydrogenase family 29 496 3.6E-175 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_3031 3bc765934e96b384d52185b949625701 387 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 380 5.5E-88 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 dqs_3031 3bc765934e96b384d52185b949625701 387 Pfam PF01494 FAD binding domain 6 307 3.9E-16 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 dqs_3031 3bc765934e96b384d52185b949625701 387 Gene3D G3DSA:3.50.50.60 7 329 4.5E-65 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3031 3bc765934e96b384d52185b949625701 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 270 285 9.4E-13 T 11-10-2018 dqs_3031 3bc765934e96b384d52185b949625701 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 301 9.4E-13 T 11-10-2018 dqs_3031 3bc765934e96b384d52185b949625701 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 9.4E-13 T 11-10-2018 dqs_3031 3bc765934e96b384d52185b949625701 387 Gene3D G3DSA:3.30.9.50 75 259 4.5E-65 T 11-10-2018 dqs_3031 3bc765934e96b384d52185b949625701 387 SUPERFAMILY SSF51905 5 381 5.98E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4065 5eaf59fc7af7e39e7533519402c8f20f 459 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 177 192 4.8E-8 T 11-10-2018 dqs_4065 5eaf59fc7af7e39e7533519402c8f20f 459 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 29 51 4.8E-8 T 11-10-2018 dqs_4065 5eaf59fc7af7e39e7533519402c8f20f 459 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 308 323 4.8E-8 T 11-10-2018 dqs_4065 5eaf59fc7af7e39e7533519402c8f20f 459 SUPERFAMILY SSF51905 27 388 2.03E-48 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4065 5eaf59fc7af7e39e7533519402c8f20f 459 Gene3D G3DSA:3.50.50.60 24 426 3.8E-122 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4065 5eaf59fc7af7e39e7533519402c8f20f 459 Pfam PF04820 Tryptophan halogenase 29 101 8.8E-12 T 11-10-2018 IPR006905 Flavin-dependent halogenase dqs_4065 5eaf59fc7af7e39e7533519402c8f20f 459 Pfam PF04820 Tryptophan halogenase 117 376 6.3E-23 T 11-10-2018 IPR006905 Flavin-dependent halogenase dqs_0048 d43ee15640bd22efa06d517789325ae3 269 SUPERFAMILY SSF51735 9 261 9.4E-75 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_0048 d43ee15640bd22efa06d517789325ae3 269 Gene3D G3DSA:3.40.50.720 2 264 3.0E-78 T 11-10-2018 dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 5.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 5.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 5.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0048 d43ee15640bd22efa06d517789325ae3 269 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 260 1.3E-59 T 11-10-2018 dqs_3094 676ecbcd7c0374eed5761fe319a19163 91 Gene3D G3DSA:1.20.1290.10 2 78 9.8E-13 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 dqs_3094 676ecbcd7c0374eed5761fe319a19163 91 SUPERFAMILY SSF69118 3 66 4.06E-13 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 dqs_3094 676ecbcd7c0374eed5761fe319a19163 91 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 3 51 4.9E-11 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 dqs_3094 676ecbcd7c0374eed5761fe319a19163 91 Pfam PF02627 Carboxymuconolactone decarboxylase family 3 66 1.8E-12 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 dqs_0894 f7a29fa1233b15e82354fbfe7a87b82b 267 SMART SM00346 18 107 2.2E-24 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 dqs_0894 f7a29fa1233b15e82354fbfe7a87b82b 267 Pfam PF09339 IclR helix-turn-helix domain 21 70 4.6E-14 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 dqs_0894 f7a29fa1233b15e82354fbfe7a87b82b 267 SUPERFAMILY SSF55781 75 261 1.7E-45 T 11-10-2018 dqs_0894 f7a29fa1233b15e82354fbfe7a87b82b 267 SUPERFAMILY SSF46785 18 90 1.92E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0894 f7a29fa1233b15e82354fbfe7a87b82b 267 Pfam PF01614 Bacterial transcriptional regulator 136 256 4.0E-27 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal dqs_0894 f7a29fa1233b15e82354fbfe7a87b82b 267 Gene3D G3DSA:3.30.450.40 89 267 6.3E-52 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_0894 f7a29fa1233b15e82354fbfe7a87b82b 267 Gene3D G3DSA:1.10.10.10 16 88 1.9E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_4107 b829989bbb29f8fae8937792ffdb6d4e 198 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 5 193 1.4E-50 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 dqs_4107 b829989bbb29f8fae8937792ffdb6d4e 198 Pfam PF01725 Ham1 family 5 191 2.2E-52 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 dqs_4107 b829989bbb29f8fae8937792ffdb6d4e 198 SUPERFAMILY SSF52972 3 194 3.66E-68 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like dqs_4107 b829989bbb29f8fae8937792ffdb6d4e 198 Hamap MF_01405 dITP/XTP pyrophosphatase. 3 195 48.231 T 11-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 dqs_4107 b829989bbb29f8fae8937792ffdb6d4e 198 Gene3D G3DSA:3.90.950.10 1 197 1.5E-70 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like dqs_2427 02775c2cade98310f215e6985378ee3d 364 ProSitePatterns PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature. 76 98 - T 11-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 dqs_2427 02775c2cade98310f215e6985378ee3d 364 SUPERFAMILY SSF53187 56 334 7.28E-47 T 11-10-2018 dqs_2427 02775c2cade98310f215e6985378ee3d 364 Gene3D G3DSA:3.40.630.10 31 303 9.9E-29 T 11-10-2018 dqs_2427 02775c2cade98310f215e6985378ee3d 364 Pfam PF00246 Zinc carboxypeptidase 61 263 9.5E-15 T 11-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 dqs_2687 1081e2c928ab164433c81384330d4627 291 Gene3D G3DSA:3.60.15.10 5 291 2.7E-111 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_2687 1081e2c928ab164433c81384330d4627 291 SUPERFAMILY SSF56281 15 256 1.49E-49 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_2687 1081e2c928ab164433c81384330d4627 291 Pfam PF00753 Metallo-beta-lactamase superfamily 59 206 7.6E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_2687 1081e2c928ab164433c81384330d4627 291 SMART SM00849 19 209 3.8E-24 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_1925 b945c1d04348b5d8ab902e8d5827cece 349 Gene3D G3DSA:1.10.10.10 199 347 3.8E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1925 b945c1d04348b5d8ab902e8d5827cece 349 Pfam PF00196 Bacterial regulatory proteins, luxR family 289 329 7.0E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1925 b945c1d04348b5d8ab902e8d5827cece 349 SUPERFAMILY SSF46894 272 331 6.8E-11 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_1925 b945c1d04348b5d8ab902e8d5827cece 349 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 302 318 6.3E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1925 b945c1d04348b5d8ab902e8d5827cece 349 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 288 302 6.3E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1925 b945c1d04348b5d8ab902e8d5827cece 349 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 318 330 6.3E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1925 b945c1d04348b5d8ab902e8d5827cece 349 SMART SM00421 285 342 1.2E-5 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3110 77074513fd709bcf95ff94070ee3f146 595 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 30 565 4.5E-242 T 11-10-2018 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 dqs_3110 77074513fd709bcf95ff94070ee3f146 595 SMART SM00564 94 125 1.2E-5 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3110 77074513fd709bcf95ff94070ee3f146 595 SMART SM00564 345 374 610.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3110 77074513fd709bcf95ff94070ee3f146 595 SMART SM00564 454 496 25.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3110 77074513fd709bcf95ff94070ee3f146 595 SMART SM00564 188 225 6.4 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3110 77074513fd709bcf95ff94070ee3f146 595 SMART SM00564 505 537 9.0E-4 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3110 77074513fd709bcf95ff94070ee3f146 595 SMART SM00564 142 174 2.4E-4 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3110 77074513fd709bcf95ff94070ee3f146 595 SMART SM00564 271 319 97.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3110 77074513fd709bcf95ff94070ee3f146 595 Pfam PF13360 PQQ-like domain 77 232 9.2E-16 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_3110 77074513fd709bcf95ff94070ee3f146 595 Gene3D G3DSA:2.140.10.10 31 595 1.5E-218 T 11-10-2018 dqs_3110 77074513fd709bcf95ff94070ee3f146 595 SUPERFAMILY SSF50998 40 588 2.49E-165 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily dqs_3110 77074513fd709bcf95ff94070ee3f146 595 Pfam PF01011 PQQ enzyme repeat 514 547 2.0E-10 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_3481 a5d0e8ff91a61046f05f25cf73a05001 252 SUPERFAMILY SSF51366 1 251 2.51E-86 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 dqs_3481 a5d0e8ff91a61046f05f25cf73a05001 252 Pfam PF00977 Histidine biosynthesis protein 5 234 2.7E-91 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 dqs_3481 a5d0e8ff91a61046f05f25cf73a05001 252 Gene3D G3DSA:3.20.20.70 1 252 2.7E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3481 a5d0e8ff91a61046f05f25cf73a05001 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 5.0E-115 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 dqs_3481 a5d0e8ff91a61046f05f25cf73a05001 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 49.37 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 dqs_0553 fdd4d2c3a77c7721d6952a9bcaf274f3 240 Pfam PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal 11 95 1.1E-28 T 11-10-2018 IPR031763 Dinitrogenase iron-molybdenum cofactor, N-terminal dqs_0553 fdd4d2c3a77c7721d6952a9bcaf274f3 240 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 117 208 1.8E-17 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis dqs_0553 fdd4d2c3a77c7721d6952a9bcaf274f3 240 Gene3D G3DSA:1.10.150.590 4 98 1.8E-24 T 11-10-2018 IPR038127 NafY, N-terminal domain superfamily dqs_0553 fdd4d2c3a77c7721d6952a9bcaf274f3 240 Gene3D G3DSA:3.30.420.130 103 222 1.9E-30 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_0553 fdd4d2c3a77c7721d6952a9bcaf274f3 240 SUPERFAMILY SSF53146 105 221 5.89E-31 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_0160 d2d12962b704b335ffccb3dc5da32b31 103 Gene3D G3DSA:1.10.10.10 5 101 3.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0160 d2d12962b704b335ffccb3dc5da32b31 103 SMART SM00418 18 97 4.5E-15 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_0160 d2d12962b704b335ffccb3dc5da32b31 103 SUPERFAMILY SSF46785 10 100 1.57E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0160 d2d12962b704b335ffccb3dc5da32b31 103 Pfam PF01022 Bacterial regulatory protein, arsR family 25 72 1.3E-10 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_0160 d2d12962b704b335ffccb3dc5da32b31 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 7.3E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_0160 d2d12962b704b335ffccb3dc5da32b31 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 7.3E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_0160 d2d12962b704b335ffccb3dc5da32b31 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 7.3E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 Hamap MF_00900 GTPase HflX [hflX]. 48 433 46.425 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 Pfam PF13167 GTP-binding GTPase N-terminal 45 147 1.0E-27 T 11-10-2018 IPR025121 GTPase HflX, N-terminal dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 Pfam PF16360 GTP-binding GTPase Middle Region 151 231 1.3E-19 T 11-10-2018 IPR032305 GTP-binding protein, middle domain dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 Pfam PF01926 50S ribosome-binding GTPase 239 358 8.6E-20 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 PIRSF PIRSF006809 18 463 9.0E-144 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 SUPERFAMILY SSF52540 238 416 2.91E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 Gene3D G3DSA:3.40.50.11060 38 176 1.9E-34 T 11-10-2018 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 33 401 8.7E-110 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 Gene3D G3DSA:3.40.50.300 237 410 4.7E-38 T 11-10-2018 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 240 260 3.9E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 289 304 3.9E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1447 e1fa5f99c3bb2fa4cabf2ee59f2dadea 464 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 261 279 3.9E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0543 16ff5df8d0dd9f15cdb7a5a55451bf16 203 Pfam PF09997 Predicted membrane protein (DUF2238) 34 174 2.2E-50 T 11-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 dqs_0543 16ff5df8d0dd9f15cdb7a5a55451bf16 203 PIRSF PIRSF020606 1 196 1.7E-62 T 11-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 dqs_0769 4e0f5fef7041505fa8398c712c1b3743 432 Pfam PF03781 Sulfatase-modifying factor enzyme 1 191 328 1.6E-27 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 dqs_0769 4e0f5fef7041505fa8398c712c1b3743 432 Pfam PF03781 Sulfatase-modifying factor enzyme 1 349 428 2.4E-6 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 dqs_0769 4e0f5fef7041505fa8398c712c1b3743 432 Gene3D G3DSA:3.90.1580.10 332 432 1.7E-9 T 11-10-2018 dqs_0769 4e0f5fef7041505fa8398c712c1b3743 432 Gene3D G3DSA:3.90.1580.10 178 331 8.5E-32 T 11-10-2018 dqs_0769 4e0f5fef7041505fa8398c712c1b3743 432 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 19 428 1.9E-166 T 11-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 dqs_0769 4e0f5fef7041505fa8398c712c1b3743 432 SUPERFAMILY SSF56436 188 430 8.71E-69 T 11-10-2018 IPR016187 C-type lectin fold dqs_0769 4e0f5fef7041505fa8398c712c1b3743 432 Pfam PF12867 DinB superfamily 23 157 1.5E-10 T 11-10-2018 IPR024775 DinB-like domain dqs_0348 b32629437164bbde006167df11e016c9 259 Gene3D G3DSA:3.20.20.450 12 249 3.0E-61 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0348 b32629437164bbde006167df11e016c9 259 SMART SM00052 13 240 6.1E-26 T 11-10-2018 IPR001633 EAL domain dqs_0348 b32629437164bbde006167df11e016c9 259 SUPERFAMILY SSF141868 19 237 1.57E-53 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0348 b32629437164bbde006167df11e016c9 259 Pfam PF00563 EAL domain 19 235 8.0E-45 T 11-10-2018 IPR001633 EAL domain dqs_1047 de21f2ce39946b1e2a99e24171703221 96 SUPERFAMILY SSF50129 1 95 3.01E-35 T 11-10-2018 IPR011032 GroES-like superfamily dqs_1047 de21f2ce39946b1e2a99e24171703221 96 PRINTS PR00297 10kDa chaperonin signature 25 46 2.1E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_1047 de21f2ce39946b1e2a99e24171703221 96 PRINTS PR00297 10kDa chaperonin signature 81 94 2.1E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_1047 de21f2ce39946b1e2a99e24171703221 96 PRINTS PR00297 10kDa chaperonin signature 3 18 2.1E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_1047 de21f2ce39946b1e2a99e24171703221 96 PRINTS PR00297 10kDa chaperonin signature 60 72 2.1E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_1047 de21f2ce39946b1e2a99e24171703221 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 2.8E-36 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_1047 de21f2ce39946b1e2a99e24171703221 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 dqs_1047 de21f2ce39946b1e2a99e24171703221 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 27.267 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_1047 de21f2ce39946b1e2a99e24171703221 96 Gene3D G3DSA:2.30.33.40 1 96 1.8E-39 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 dqs_1047 de21f2ce39946b1e2a99e24171703221 96 SMART SM00883 2 94 3.8E-59 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 436 202.928 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 Gene3D G3DSA:1.10.300.10 103 202 3.7E-92 T 11-10-2018 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 432 7.4E-164 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 SMART SM00788 4 429 1.6E-279 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 134 145 - T 11-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 Gene3D G3DSA:3.40.440.10 6 256 3.7E-92 T 11-10-2018 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 SUPERFAMILY SSF52540 3 434 2.55E-168 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 Pfam PF00709 Adenylosuccinate synthetase 5 428 1.3E-169 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 11-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 dqs_1010 8a31af92169ffa797a506644a1a95dfe 436 Gene3D G3DSA:3.90.170.10 268 436 2.4E-66 T 11-10-2018 dqs_0466 35efb6e1410dfd73b8f31914c7eca054 372 Gene3D G3DSA:3.40.50.300 13 217 1.3E-62 T 11-10-2018 dqs_0466 35efb6e1410dfd73b8f31914c7eca054 372 SUPERFAMILY SSF52540 14 198 4.5E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0466 35efb6e1410dfd73b8f31914c7eca054 372 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 267 361 2.1E-17 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal dqs_0466 35efb6e1410dfd73b8f31914c7eca054 372 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 17 198 2.8E-48 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain dqs_0466 35efb6e1410dfd73b8f31914c7eca054 372 SUPERFAMILY SSF90002 267 361 2.75E-18 T 11-10-2018 dqs_0466 35efb6e1410dfd73b8f31914c7eca054 372 SMART SM00833 267 365 4.2E-28 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal dqs_0466 35efb6e1410dfd73b8f31914c7eca054 372 Gene3D G3DSA:3.30.1220.10 251 365 1.0E-19 T 11-10-2018 IPR036627 CobW-like, C-terminal domain superfamily dqs_0152 3a5f28f84af9d04081d56538a4fc5928 256 SUPERFAMILY SSF52540 1 253 6.15E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0152 3a5f28f84af9d04081d56538a4fc5928 256 Pfam PF13614 AAA domain 3 178 1.2E-62 T 11-10-2018 IPR025669 AAA domain dqs_0152 3a5f28f84af9d04081d56538a4fc5928 256 PIRSF PIRSF009320 2 58 6.8E-14 T 11-10-2018 dqs_0152 3a5f28f84af9d04081d56538a4fc5928 256 PIRSF PIRSF009320 87 255 2.4E-9 T 11-10-2018 dqs_0152 3a5f28f84af9d04081d56538a4fc5928 256 Gene3D G3DSA:3.40.50.300 1 255 5.7E-77 T 11-10-2018 dqs_1213 a24d8f40cfa1cebf6b83559d84df0a20 151 Gene3D G3DSA:2.60.120.1140 20 148 7.0E-39 T 11-10-2018 IPR038695 Saro_0823-like superfamily dqs_1213 a24d8f40cfa1cebf6b83559d84df0a20 151 Pfam PF02643 Uncharacterized ACR, COG1430 41 142 4.3E-33 T 11-10-2018 IPR003795 Protein of unknown function DUF192 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 Gene3D G3DSA:3.30.479.20 155 272 9.2E-40 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 Pfam PF00889 Elongation factor TS 73 273 3.4E-70 T 11-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 Hamap MF_00050 Elongation factor Ts [tsf]. 1 290 78.546 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 SUPERFAMILY SSF46934 3 56 1.12E-14 T 11-10-2018 IPR009060 UBA-like superfamily GO:0005515 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 Gene3D G3DSA:3.30.479.20 57 149 3.9E-26 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 SUPERFAMILY SSF54713 56 147 9.68E-25 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 290 3.6E-94 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 Gene3D G3DSA:1.10.286.20 192 238 9.2E-40 T 11-10-2018 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 SUPERFAMILY SSF54713 150 290 1.24E-48 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 Gene3D G3DSA:1.10.8.10 1 56 8.3E-22 T 11-10-2018 dqs_2063 bc7ccd47dfef118168b4c2c328eca400 297 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.1E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.1E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.1E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.1E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.1E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.1E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 6.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 6.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 SUPERFAMILY SSF51735 2 252 1.84E-78 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 Gene3D G3DSA:3.40.50.720 1 253 2.0E-78 T 11-10-2018 dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_0051 cf16c44869d4d4bc4425fe362ad68419 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 1.2E-66 T 11-10-2018 dqs_0255 d6e3c2d93d6f1cbcb3cd6c8279c13c54 162 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 31 156 2.4E-25 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ dqs_0920 78e2ab229231ccdfbac7b87dab10e906 107 SMART SM00450 7 102 4.3E-21 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_0920 78e2ab229231ccdfbac7b87dab10e906 107 SUPERFAMILY SSF52821 2 105 1.22E-30 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_0920 78e2ab229231ccdfbac7b87dab10e906 107 Gene3D G3DSA:3.40.250.10 1 104 5.7E-26 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_0920 78e2ab229231ccdfbac7b87dab10e906 107 Pfam PF00581 Rhodanese-like domain 10 98 4.1E-16 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 Gene3D G3DSA:1.20.120.1810 20 122 1.0E-28 T 11-10-2018 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 SUPERFAMILY SSF88946 15 122 7.46E-42 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 250 276 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 Pfam PF00140 Sigma-70 factor, region 1.2 15 43 8.5E-8 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 280 2.9E-122 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 Pfam PF04545 Sigma-70, region 4 226 277 4.8E-16 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 Pfam PF04542 Sigma-70 region 2 53 122 6.0E-18 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 SUPERFAMILY SSF88659 188 281 8.78E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.1E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 PRINTS PR00046 Major sigma-70 factor signature 265 276 3.1E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 PRINTS PR00046 Major sigma-70 factor signature 230 242 3.1E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 PRINTS PR00046 Major sigma-70 factor signature 250 265 3.1E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 Gene3D G3DSA:1.20.140.160 129 282 1.7E-16 T 11-10-2018 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 277 3.4E-31 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 1 282 50.758 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_3430 2206c7fe7bec3682e7918f6167655b1f 284 PIRSF PIRSF000770 4 284 2.1E-33 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_0321 e18f557997f20464a10fa999b61d068a 355 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 269 343 4.0E-15 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_0321 e18f557997f20464a10fa999b61d068a 355 SUPERFAMILY SSF54292 235 351 6.87E-28 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_0321 e18f557997f20464a10fa999b61d068a 355 SUPERFAMILY SSF63380 3 105 1.72E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_0321 e18f557997f20464a10fa999b61d068a 355 Gene3D G3DSA:3.40.50.80 111 248 1.2E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_0321 e18f557997f20464a10fa999b61d068a 355 Pfam PF00175 Oxidoreductase NAD-binding domain 120 226 5.3E-15 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_0321 e18f557997f20464a10fa999b61d068a 355 Pfam PF00970 Oxidoreductase FAD-binding domain 8 104 2.5E-13 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_0321 e18f557997f20464a10fa999b61d068a 355 SUPERFAMILY SSF52343 109 257 1.06E-33 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_0321 e18f557997f20464a10fa999b61d068a 355 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 5 353 2.2E-171 T 11-10-2018 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 dqs_0321 e18f557997f20464a10fa999b61d068a 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 117 136 2.8E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_0321 e18f557997f20464a10fa999b61d068a 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 37 49 2.8E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_0321 e18f557997f20464a10fa999b61d068a 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 213 221 2.8E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_0321 e18f557997f20464a10fa999b61d068a 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 142 151 2.8E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_0321 e18f557997f20464a10fa999b61d068a 355 Gene3D G3DSA:3.10.20.30 249 355 7.0E-27 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_0321 e18f557997f20464a10fa999b61d068a 355 Gene3D G3DSA:2.40.30.10 3 105 2.8E-23 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 SUPERFAMILY SSF82714 715 798 3.14E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Gene3D G3DSA:3.30.70.1430 44 810 7.9E-290 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 SUPERFAMILY SSF82693 45 128 1.73E-20 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 SUPERFAMILY SSF82866 292 497 7.32E-41 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Gene3D G3DSA:1.20.1640.10 504 1015 7.9E-290 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 1.6E-39 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.6E-39 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 1.6E-39 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 1.6E-39 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 1.6E-39 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 PRINTS PR00702 Acriflavin resistance protein family signature 359 380 1.6E-39 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 1.6E-39 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 PRINTS PR00702 Acriflavin resistance protein family signature 613 627 1.6E-39 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Gene3D G3DSA:1.20.1640.10 17 503 7.9E-290 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 SUPERFAMILY SSF82693 143 326 1.23E-17 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Gene3D G3DSA:3.30.2090.10 181 272 7.9E-290 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 SUPERFAMILY SSF82714 185 266 1.44E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Gene3D G3DSA:3.30.70.1440 663 860 7.9E-290 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Gene3D G3DSA:3.30.70.1320 138 326 7.9E-290 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Pfam PF00873 AcrB/AcrD/AcrF family 8 1017 1.3E-301 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Gene3D G3DSA:3.30.70.1430 559 662 7.9E-290 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 SUPERFAMILY SSF82866 797 1019 1.24E-56 T 11-10-2018 dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 Gene3D G3DSA:3.30.2090.10 714 802 7.9E-290 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0281 3a7f097a620842ed1f403caad6b3ffa8 1034 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 5 1017 0.0 T 11-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 dqs_3546 228f8a8e6863cb3b63303556d1111f73 122 SMART SM01374 1 122 4.6E-85 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 dqs_3546 228f8a8e6863cb3b63303556d1111f73 122 Gene3D G3DSA:2.40.150.20 1 122 7.4E-54 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3546 228f8a8e6863cb3b63303556d1111f73 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 6.6E-58 T 11-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 dqs_3546 228f8a8e6863cb3b63303556d1111f73 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3546 228f8a8e6863cb3b63303556d1111f73 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.222 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 dqs_3546 228f8a8e6863cb3b63303556d1111f73 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 9.6E-55 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 dqs_3546 228f8a8e6863cb3b63303556d1111f73 122 SUPERFAMILY SSF50193 1 122 2.49E-51 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3051 4ddf042e41389515836a74276446bac8 357 Gene3D G3DSA:2.40.50.100 49 86 2.2E-6 T 11-10-2018 dqs_3051 4ddf042e41389515836a74276446bac8 357 Gene3D G3DSA:2.40.30.170 228 331 9.8E-10 T 11-10-2018 dqs_3051 4ddf042e41389515836a74276446bac8 357 Gene3D G3DSA:1.10.287.470 112 194 3.3E-9 T 11-10-2018 dqs_3051 4ddf042e41389515836a74276446bac8 357 Gene3D G3DSA:1.10.287.470 87 110 2.2E-6 T 11-10-2018 dqs_3051 4ddf042e41389515836a74276446bac8 357 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 300 1.0E-11 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_3051 4ddf042e41389515836a74276446bac8 357 SUPERFAMILY SSF111369 43 121 1.28E-5 T 11-10-2018 dqs_3051 4ddf042e41389515836a74276446bac8 357 SUPERFAMILY SSF111369 174 264 4.05E-5 T 11-10-2018 dqs_3797 301fec22c64b727d79bacb24bd1536a0 110 SMART SM01219 1 106 3.8E-42 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_3797 301fec22c64b727d79bacb24bd1536a0 110 Pfam PF01491 Frataxin-like domain 1 102 4.3E-20 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_3797 301fec22c64b727d79bacb24bd1536a0 110 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 105 21.411 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_3797 301fec22c64b727d79bacb24bd1536a0 110 Gene3D G3DSA:3.30.920.10 1 106 1.5E-30 T 11-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_3797 301fec22c64b727d79bacb24bd1536a0 110 SUPERFAMILY SSF55387 1 103 5.93E-25 T 11-10-2018 dqs_3797 301fec22c64b727d79bacb24bd1536a0 110 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 104 4.1E-30 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_1111 6386e6f1552555f26c5007b82147b38b 350 Pfam PF00248 Aldo/keto reductase family 21 341 3.2E-71 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain dqs_1111 6386e6f1552555f26c5007b82147b38b 350 Gene3D G3DSA:3.20.20.100 6 350 1.1E-123 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily dqs_1111 6386e6f1552555f26c5007b82147b38b 350 SUPERFAMILY SSF51430 6 348 4.06E-107 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily dqs_1164 03800167577d59a23747e70580d24be3 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 dqs_1164 03800167577d59a23747e70580d24be3 164 Gene3D G3DSA:2.40.100.10 1 164 2.7E-69 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily dqs_1164 03800167577d59a23747e70580d24be3 164 PIRSF PIRSF001467 1 164 5.6E-26 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 dqs_1164 03800167577d59a23747e70580d24be3 164 SUPERFAMILY SSF50891 3 163 2.34E-59 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily dqs_1164 03800167577d59a23747e70580d24be3 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 163 1.9E-47 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 dqs_1164 03800167577d59a23747e70580d24be3 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 3.1E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 dqs_1164 03800167577d59a23747e70580d24be3 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 3.1E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 dqs_1164 03800167577d59a23747e70580d24be3 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 3.1E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 dqs_0027 dc5b85a7391e1fe713046574b169423a 157 Gene3D G3DSA:1.10.3680.10 6 151 7.0E-14 T 11-10-2018 IPR029024 TerB-like dqs_0027 dc5b85a7391e1fe713046574b169423a 157 Pfam PF05099 Tellurite resistance protein TerB 6 144 1.6E-35 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal dqs_0027 dc5b85a7391e1fe713046574b169423a 157 SUPERFAMILY SSF158682 6 148 1.7E-24 T 11-10-2018 IPR029024 TerB-like dqs_2678 702c28cf1e99d6abab2e80f143d02771 341 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 30 315 2.0E-55 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 dqs_2678 702c28cf1e99d6abab2e80f143d02771 341 Gene3D G3DSA:3.40.190.170 24 341 3.1E-108 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily dqs_2678 702c28cf1e99d6abab2e80f143d02771 341 SUPERFAMILY SSF53850 134 277 1.22E-6 T 11-10-2018 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 PIRSF PIRSF006648 2 260 5.3E-27 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 TIGRFAM TIGR01291 nodJ: ABC-2 type transporter, NodJ family 14 260 2.9E-85 T 11-10-2018 IPR005981 ABC-2 type transporter, NodJ GO:0005215|GO:0009877|GO:0015772|GO:0016020 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 Pfam PF01061 ABC-2 type transporter 18 225 6.8E-25 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 203 222 1.6E-49 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 146 170 1.6E-49 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 34 55 1.6E-49 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 64 86 1.6E-49 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 183 202 1.6E-49 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0361 58374e3107f49ba335f2bf31ce5f9262 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 109 134 1.6E-49 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 17 40 - T 11-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 SMART SM00220 11 276 3.3E-58 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 SUPERFAMILY SSF51206 295 405 3.93E-14 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 PIRSF PIRSF000654 27 273 5.6E-26 T 11-10-2018 dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 Pfam PF00027 Cyclic nucleotide-binding domain 326 399 1.5E-7 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 Gene3D G3DSA:1.10.510.10 3 299 1.6E-68 T 11-10-2018 dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 Pfam PF00069 Protein kinase domain 11 265 4.5E-52 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 Gene3D G3DSA:2.60.120.10 300 429 8.9E-14 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 136 148 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 dqs_2746 4096564d7d2bd7d4d562d8e151b8f797 454 SUPERFAMILY SSF56112 8 277 3.91E-73 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_3255 18200d8de88b25b3973678e36b5ffbcf 396 Pfam PF11306 Protein of unknown function (DUF3108) 112 343 6.5E-29 T 11-10-2018 IPR021457 Protein of unknown function DUF3108 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 239 804 7.4E-183 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 SUPERFAMILY SSF56784 500 802 1.04E-57 T 11-10-2018 IPR036412 HAD-like superfamily dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Pfam PF00122 E1-E2 ATPase 303 481 2.8E-56 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 SUPERFAMILY SSF81653 304 402 3.4E-27 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 504 510 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Gene3D G3DSA:3.30.70.100 12 83 4.3E-18 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 SUPERFAMILY SSF55008 16 81 2.62E-17 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 87 149 3.5E-9 T 11-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 19 81 3.0E-12 T 11-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Pfam PF00403 Heavy-metal-associated domain 22 80 6.4E-14 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Pfam PF00403 Heavy-metal-associated domain 88 147 5.1E-12 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 624 635 2.8E-29 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 352 366 2.8E-29 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 502 516 2.8E-29 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 725 737 2.8E-29 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 646 656 2.8E-29 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 702 721 2.8E-29 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Gene3D G3DSA:3.40.1110.10 513 631 7.8E-82 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 SUPERFAMILY SSF55008 86 149 8.9E-17 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 ProSitePatterns PS01047 Heavy-metal-associated domain. 90 118 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 ProSitePatterns PS01047 Heavy-metal-associated domain. 23 51 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00943 Copper-transporting ATPase signature 485 500 4.8E-5 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00943 Copper-transporting ATPase signature 272 291 4.8E-5 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00943 Copper-transporting ATPase signature 425 439 4.8E-5 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00943 Copper-transporting ATPase signature 292 310 4.8E-5 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00943 Copper-transporting ATPase signature 224 243 4.8E-5 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 274 782 8.6E-90 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Gene3D G3DSA:2.70.150.20 295 407 3.6E-37 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Pfam PF00702 haloacid dehalogenase-like hydrolase 498 716 2.3E-36 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Gene3D G3DSA:3.40.50.1000 496 752 7.8E-82 T 11-10-2018 IPR023214 HAD superfamily dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 220 805 9.3E-174 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 Gene3D G3DSA:3.30.70.100 84 150 8.2E-18 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00942 Copper-transporting ATPase 1 signature 222 247 4.2E-7 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 PRINTS PR00942 Copper-transporting ATPase 1 signature 18 43 4.2E-7 T 11-10-2018 dqs_1477 04df479e1442878eb3584d1c3c7ef7c5 811 SUPERFAMILY SSF81665 270 774 2.35E-14 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 dqs_1674 affb0a02851d223aad8bb108f5539316 597 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 597 3.5E-237 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1674 affb0a02851d223aad8bb108f5539316 597 SUPERFAMILY SSF56425 236 354 3.89E-44 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1674 affb0a02851d223aad8bb108f5539316 597 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 7 589 1.5E-284 T 11-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1674 affb0a02851d223aad8bb108f5539316 597 Gene3D G3DSA:1.20.58.100 433 547 1.4E-35 T 11-10-2018 dqs_1674 affb0a02851d223aad8bb108f5539316 597 SUPERFAMILY SSF46977 451 597 3.66E-41 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1674 affb0a02851d223aad8bb108f5539316 597 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 367 389 3.6E-5 T 11-10-2018 dqs_1674 affb0a02851d223aad8bb108f5539316 597 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 3.6E-5 T 11-10-2018 dqs_1674 affb0a02851d223aad8bb108f5539316 597 Gene3D G3DSA:3.90.700.10 246 349 3.7E-166 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1674 affb0a02851d223aad8bb108f5539316 597 PIRSF PIRSF000171 1 578 9.9E-45 T 11-10-2018 dqs_1674 affb0a02851d223aad8bb108f5539316 597 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 2.6E-5 T 11-10-2018 dqs_1674 affb0a02851d223aad8bb108f5539316 597 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 382 389 2.6E-5 T 11-10-2018 dqs_1674 affb0a02851d223aad8bb108f5539316 597 Gene3D G3DSA:4.10.80.40 555 597 2.3E-6 T 11-10-2018 dqs_1674 affb0a02851d223aad8bb108f5539316 597 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1674 affb0a02851d223aad8bb108f5539316 597 Gene3D G3DSA:3.50.50.60 9 415 3.7E-166 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1674 affb0a02851d223aad8bb108f5539316 597 Pfam PF00890 FAD binding domain 9 404 1.3E-120 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1674 affb0a02851d223aad8bb108f5539316 597 SUPERFAMILY SSF51905 6 432 5.02E-77 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1674 affb0a02851d223aad8bb108f5539316 597 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 597 1.9E-37 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_2579 47ef1bca12e75ea516b9f280efc18110 484 Pfam PF00171 Aldehyde dehydrogenase family 16 480 3.6E-159 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_2579 47ef1bca12e75ea516b9f280efc18110 484 SUPERFAMILY SSF53720 2 483 6.15E-161 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_2579 47ef1bca12e75ea516b9f280efc18110 484 Gene3D G3DSA:3.40.605.10 16 472 4.7E-178 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_2579 47ef1bca12e75ea516b9f280efc18110 484 Gene3D G3DSA:3.40.309.10 255 449 4.7E-178 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_2579 47ef1bca12e75ea516b9f280efc18110 484 TIGRFAM TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase 4 484 3.2E-276 T 11-10-2018 IPR017628 2-hydroxymuconic semialdehyde dehydrogenase GO:0016620|GO:0055114 dqs_2579 47ef1bca12e75ea516b9f280efc18110 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 dqs_2579 47ef1bca12e75ea516b9f280efc18110 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_2410 aceb6940610d8cce2921e14763fd9440 584 Gene3D G3DSA:3.40.109.10 52 296 3.8E-48 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 dqs_2410 aceb6940610d8cce2921e14763fd9440 584 SUPERFAMILY SSF55469 360 570 4.86E-12 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 dqs_2410 aceb6940610d8cce2921e14763fd9440 584 Gene3D G3DSA:3.40.109.10 324 563 9.7E-35 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 dqs_2410 aceb6940610d8cce2921e14763fd9440 584 Pfam PF00881 Nitroreductase family 493 562 3.2E-5 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 dqs_2410 aceb6940610d8cce2921e14763fd9440 584 SUPERFAMILY SSF55469 131 251 2.2E-5 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 dqs_2896 dd441db811a74dad55b824036d0c9ea1 130 Gene3D G3DSA:3.30.300.20 4 128 7.7E-35 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_2896 dd441db811a74dad55b824036d0c9ea1 130 Pfam PF02566 OsmC-like protein 24 121 4.0E-17 T 11-10-2018 IPR003718 OsmC/Ohr family dqs_2896 dd441db811a74dad55b824036d0c9ea1 130 SUPERFAMILY SSF82784 2 127 7.46E-37 T 11-10-2018 IPR036102 OsmC/Ohr superfamily dqs_3381 ac48301f6d8ef870605699bab2564846 300 PRINTS PR00474 Glutamate 5-kinase family signature 199 226 1.6E-5 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3381 ac48301f6d8ef870605699bab2564846 300 PRINTS PR00474 Glutamate 5-kinase family signature 249 269 1.6E-5 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3381 ac48301f6d8ef870605699bab2564846 300 SUPERFAMILY SSF53633 15 299 1.18E-92 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_3381 ac48301f6d8ef870605699bab2564846 300 Pfam PF00696 Amino acid kinase family 32 276 1.6E-44 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 dqs_3381 ac48301f6d8ef870605699bab2564846 300 TIGRFAM TIGR00761 argB: acetylglutamate kinase 33 274 5.2E-74 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 dqs_3381 ac48301f6d8ef870605699bab2564846 300 Gene3D G3DSA:3.40.1160.10 11 299 2.0E-97 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_3381 ac48301f6d8ef870605699bab2564846 300 Hamap MF_00082 Acetylglutamate kinase [argB]. 31 292 51.019 T 11-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 dqs_3381 ac48301f6d8ef870605699bab2564846 300 PIRSF PIRSF000728 17 299 3.6E-105 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 dqs_1551 4203a020d808c40d2b0d59a6e978ad4c 170 SUPERFAMILY SSF46785 19 159 2.48E-28 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1551 4203a020d808c40d2b0d59a6e978ad4c 170 Pfam PF12802 MarR family 45 103 5.5E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_1551 4203a020d808c40d2b0d59a6e978ad4c 170 SMART SM00347 40 140 4.5E-17 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_1551 4203a020d808c40d2b0d59a6e978ad4c 170 Gene3D G3DSA:1.10.10.10 11 156 5.6E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1551 4203a020d808c40d2b0d59a6e978ad4c 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 2.1E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_1551 4203a020d808c40d2b0d59a6e978ad4c 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 96 2.1E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_1551 4203a020d808c40d2b0d59a6e978ad4c 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 2.1E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_0151 5b2cd27638c23b1f4e909baa1813b852 212 PIRSF PIRSF003078 8 212 9.6E-53 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 dqs_0151 5b2cd27638c23b1f4e909baa1813b852 212 SUPERFAMILY SSF53335 11 210 1.36E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0151 5b2cd27638c23b1f4e909baa1813b852 212 Gene3D G3DSA:3.40.50.150 3 212 4.6E-63 T 11-10-2018 dqs_0151 5b2cd27638c23b1f4e909baa1813b852 212 Pfam PF02527 rRNA small subunit methyltransferase G 28 206 1.2E-51 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 dqs_0151 5b2cd27638c23b1f4e909baa1813b852 212 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 19 208 25.842 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 dqs_0151 5b2cd27638c23b1f4e909baa1813b852 212 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 31 209 5.2E-52 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 dqs_2839 51a872b9a4a158a927f68340098a749e 493 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 143 3.3E-45 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 dqs_2839 51a872b9a4a158a927f68340098a749e 493 Gene3D G3DSA:1.20.1330.10 45 452 1.9E-144 T 11-10-2018 dqs_2839 51a872b9a4a158a927f68340098a749e 493 Gene3D G3DSA:2.170.280.10 178 400 1.9E-144 T 11-10-2018 dqs_2839 51a872b9a4a158a927f68340098a749e 493 Pfam PF07196 Flagellin hook IN motif 213 255 2.4E-7 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 dqs_2839 51a872b9a4a158a927f68340098a749e 493 SUPERFAMILY SSF64518 1 492 6.8E-105 T 11-10-2018 dqs_2839 51a872b9a4a158a927f68340098a749e 493 PRINTS PR00207 Flagellin signature 111 134 9.2E-25 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2839 51a872b9a4a158a927f68340098a749e 493 PRINTS PR00207 Flagellin signature 76 95 9.2E-25 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2839 51a872b9a4a158a927f68340098a749e 493 PRINTS PR00207 Flagellin signature 37 54 9.2E-25 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2839 51a872b9a4a158a927f68340098a749e 493 Gene3D G3DSA:2.30.220.10 192 286 1.9E-144 T 11-10-2018 dqs_2839 51a872b9a4a158a927f68340098a749e 493 Gene3D G3DSA:1.20.58.1830 5 492 1.9E-144 T 11-10-2018 dqs_2839 51a872b9a4a158a927f68340098a749e 493 Pfam PF00700 Bacterial flagellin C-terminal helical region 407 492 2.6E-27 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 Pfam PF07730 Histidine kinase 481 544 5.0E-11 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 Gene3D G3DSA:3.30.565.10 542 676 2.2E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SUPERFAMILY SSF55785 39 163 4.99E-30 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SMART SM00086 123 165 2.2E-10 T 11-10-2018 IPR001610 PAC motif dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SMART SM00086 409 450 35.0 T 11-10-2018 IPR001610 PAC motif dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SMART SM00086 248 291 0.17 T 11-10-2018 IPR001610 PAC motif dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 Pfam PF08447 PAS fold 74 157 4.0E-18 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 180 298 1.8E-13 T 11-10-2018 IPR000014 PAS domain dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 47 170 1.4E-20 T 11-10-2018 IPR000014 PAS domain dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SMART SM00091 51 117 5.3E-11 T 11-10-2018 IPR000014 PAS domain dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SMART SM00091 177 244 3.9E-5 T 11-10-2018 IPR000014 PAS domain dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SMART SM00091 328 398 120.0 T 11-10-2018 IPR000014 PAS domain dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SMART SM00387 581 675 4.9E-8 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SUPERFAMILY SSF55785 318 442 2.74E-6 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 Pfam PF08448 PAS fold 183 292 2.3E-21 T 11-10-2018 IPR013656 PAS fold-4 dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 Gene3D G3DSA:3.30.450.20 41 163 2.2E-31 T 11-10-2018 dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SUPERFAMILY SSF55874 545 673 1.06E-17 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 Gene3D G3DSA:3.30.450.20 313 461 3.8E-10 T 11-10-2018 dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 Gene3D G3DSA:3.30.450.20 171 302 8.8E-27 T 11-10-2018 dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 586 674 5.4E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2883 db73540078ac0e2cd659d0b65bc66fa3 687 SUPERFAMILY SSF55785 162 289 4.71E-24 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 Pfam PF01037 Lrp/AsnC ligand binding domain 71 142 4.8E-23 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 1.5E-17 T 11-10-2018 dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 5.5E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 5.5E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 5.5E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 SUPERFAMILY SSF46785 3 93 6.58E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 Gene3D G3DSA:1.10.10.10 4 55 3.5E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 Gene3D G3DSA:3.30.70.920 56 140 6.1E-26 T 11-10-2018 dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 SMART SM00344 3 112 2.5E-39 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 dqs_2551 4006d6ce06b91edbebc1c3dec58181d5 160 SUPERFAMILY SSF54909 63 152 4.83E-22 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 430 34.001 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 SUPERFAMILY SSF55205 1 427 4.71E-130 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 Gene3D G3DSA:3.40.50.300 429 647 4.2E-72 T 11-10-2018 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 SUPERFAMILY SSF52540 432 644 3.13E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 ProSitePatterns PS00104 EPSP synthase signature 1. 89 103 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 Gene3D G3DSA:3.65.10.10 233 428 4.5E-69 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 13 423 5.2E-132 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 TIGRFAM TIGR00017 cmk: cytidylate kinase 432 640 6.1E-64 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 ProSitePatterns PS00885 EPSP synthase signature 2. 342 360 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 Pfam PF02224 Cytidylate kinase 434 642 6.6E-66 T 11-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 Gene3D G3DSA:3.65.10.10 20 224 4.8E-69 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 428 3.6E-136 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 dqs_1179 e9f850b59aa95270b2f2655576a63d19 651 Hamap MF_00238 Cytidylate kinase [cmk]. 432 646 31.599 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 dqs_3792 c3151fd0d47de34610ce6d309c0e32b9 171 Pfam PF04351 Pilus assembly protein, PilP 23 163 5.9E-48 T 11-10-2018 IPR007446 Pilus assembly protein PilP dqs_3792 c3151fd0d47de34610ce6d309c0e32b9 171 PIRSF PIRSF016481 1 167 1.7E-44 T 11-10-2018 IPR007446 Pilus assembly protein PilP dqs_3792 c3151fd0d47de34610ce6d309c0e32b9 171 Gene3D G3DSA:2.30.30.830 72 164 5.2E-33 T 11-10-2018 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 1.1E-32 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 SUPERFAMILY SSF48179 204 301 1.04E-32 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 PIRSF PIRSF500134 1 440 6.1E-190 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 Gene3D G3DSA:3.40.50.720 235 440 7.0E-81 T 11-10-2018 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 Gene3D G3DSA:1.20.5.100 203 234 1.0E-18 T 11-10-2018 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 SUPERFAMILY SSF52413 305 434 8.76E-40 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 SUPERFAMILY SSF51735 1 194 1.36E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 2.3E-37 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 SMART SM00984 320 424 1.3E-54 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 PIRSF PIRSF000124 1 439 3.6E-148 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 Gene3D G3DSA:3.40.50.720 1 202 1.5E-82 T 11-10-2018 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 4.8E-136 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 dqs_2365 ea30398b50678982f00d25f8866c5ab3 440 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 187 4.0E-63 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 dqs_0377 6cb8bdde57f12b79e0aaddbb1f9c14e5 170 Pfam PF00581 Rhodanese-like domain 51 145 1.7E-11 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_0377 6cb8bdde57f12b79e0aaddbb1f9c14e5 170 Gene3D G3DSA:3.40.250.10 41 170 4.5E-31 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_0377 6cb8bdde57f12b79e0aaddbb1f9c14e5 170 SUPERFAMILY SSF52821 29 169 6.68E-22 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_0377 6cb8bdde57f12b79e0aaddbb1f9c14e5 170 SMART SM00450 47 153 1.7E-12 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_1295 02092bcdae0ec280b452d91488bdf80e 175 SUPERFAMILY SSF158694 11 174 9.81E-58 T 11-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 dqs_1295 02092bcdae0ec280b452d91488bdf80e 175 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 19 173 2.0E-67 T 11-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 dqs_1295 02092bcdae0ec280b452d91488bdf80e 175 Pfam PF09349 OHCU decarboxylase 16 170 3.8E-51 T 11-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 dqs_1295 02092bcdae0ec280b452d91488bdf80e 175 Gene3D G3DSA:1.10.3330.10 10 175 2.4E-65 T 11-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 dqs_3500 24dd64c231647a76d7a3e4868bf37a1e 232 SMART SM01007 9 186 1.3E-59 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal dqs_3500 24dd64c231647a76d7a3e4868bf37a1e 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 11 185 3.5E-50 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal dqs_3500 24dd64c231647a76d7a3e4868bf37a1e 232 Gene3D G3DSA:3.40.225.10 4 217 9.3E-67 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily dqs_3500 24dd64c231647a76d7a3e4868bf37a1e 232 SUPERFAMILY SSF53639 6 215 1.65E-61 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily dqs_0451 7c8d48ac96c9afe929986a1b78a5dc96 226 Gene3D G3DSA:1.10.3720.10 3 223 1.4E-49 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0451 7c8d48ac96c9afe929986a1b78a5dc96 226 SUPERFAMILY SSF161098 13 216 3.01E-41 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0451 7c8d48ac96c9afe929986a1b78a5dc96 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 222 3.4E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_0451 7c8d48ac96c9afe929986a1b78a5dc96 226 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 117 5.7E-22 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 SMART SM00448 7 125 4.0E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 SUPERFAMILY SSF52172 9 167 4.39E-31 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 205 4.7E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 SMART SM00421 149 206 2.5E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 Gene3D G3DSA:1.10.10.10 142 209 5.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.5E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.5E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.5E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 Pfam PF00072 Response regulator receiver domain 9 125 1.7E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 Gene3D G3DSA:3.40.50.2300 2 140 1.1E-46 T 11-10-2018 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2817 3364dc72fd11c0f9edd79f2140125bd7 215 SUPERFAMILY SSF46894 150 209 1.19E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 Pfam PF12698 ABC-2 family transporter protein 576 912 1.5E-35 T 11-10-2018 dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 Gene3D G3DSA:3.40.50.300 269 515 1.8E-62 T 11-10-2018 dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 SUPERFAMILY SSF52540 12 240 2.54E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 Pfam PF00005 ABC transporter 295 438 8.8E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 SUPERFAMILY SSF52540 279 498 7.88E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 Pfam PF00005 ABC transporter 29 176 2.8E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 SMART SM00382 303 494 1.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 SMART SM00382 38 242 7.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3050 6370f6dc4151363676bd14c3ad3e730c 922 Gene3D G3DSA:3.40.50.300 2 250 5.0E-58 T 11-10-2018 dqs_3885 0abae51ee8e0028100acb86524e240cb 244 Pfam PF00005 ABC transporter 26 170 2.6E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3885 0abae51ee8e0028100acb86524e240cb 244 Gene3D G3DSA:3.40.50.300 6 243 2.6E-66 T 11-10-2018 dqs_3885 0abae51ee8e0028100acb86524e240cb 244 SMART SM00382 34 221 4.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3885 0abae51ee8e0028100acb86524e240cb 244 PIRSF PIRSF039137 5 243 1.7E-105 T 11-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 dqs_3885 0abae51ee8e0028100acb86524e240cb 244 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3885 0abae51ee8e0028100acb86524e240cb 244 SUPERFAMILY SSF52540 7 241 1.55E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2865 be2d3bc2413f1078aae0c0110054abcf 420 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 1.8E-18 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 dqs_2865 be2d3bc2413f1078aae0c0110054abcf 420 SUPERFAMILY SSF64518 1 419 4.32E-68 T 11-10-2018 dqs_2865 be2d3bc2413f1078aae0c0110054abcf 420 Gene3D G3DSA:1.20.1330.10 40 240 1.1E-42 T 11-10-2018 dqs_2865 be2d3bc2413f1078aae0c0110054abcf 420 Gene3D G3DSA:1.20.1330.10 278 395 2.0E-9 T 11-10-2018 dqs_2865 be2d3bc2413f1078aae0c0110054abcf 420 Pfam PF00700 Bacterial flagellin C-terminal helical region 337 419 1.1E-5 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 dqs_2865 be2d3bc2413f1078aae0c0110054abcf 420 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 419 3.2E-88 T 11-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 dqs_2491 1573eaa85f35676c599f295d87e0fbeb 390 Pfam PF07859 alpha/beta hydrolase fold 112 311 3.2E-41 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 dqs_2491 1573eaa85f35676c599f295d87e0fbeb 390 Gene3D G3DSA:3.40.50.1820 53 332 5.8E-67 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2491 1573eaa85f35676c599f295d87e0fbeb 390 SUPERFAMILY SSF53474 78 333 3.94E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3095 d46a2fb94fc0cb0dff2252335da38563 405 Gene3D G3DSA:1.20.1250.20 6 392 5.3E-49 T 11-10-2018 dqs_3095 d46a2fb94fc0cb0dff2252335da38563 405 SUPERFAMILY SSF103473 5 390 1.83E-59 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_3095 d46a2fb94fc0cb0dff2252335da38563 405 Pfam PF07690 Major Facilitator Superfamily 15 320 1.5E-30 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_2832 f8f7597877561fb4e88eb63ea6ffc79d 491 Pfam PF00535 Glycosyl transferase family 2 50 160 4.6E-12 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_2832 f8f7597877561fb4e88eb63ea6ffc79d 491 SUPERFAMILY SSF53448 49 274 1.78E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2832 f8f7597877561fb4e88eb63ea6ffc79d 491 Gene3D G3DSA:3.90.550.10 22 298 3.7E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0651 5d5f83ee132cdc5bb37ab3d218db870a 394 Pfam PF07690 Major Facilitator Superfamily 8 340 1.3E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_0651 5d5f83ee132cdc5bb37ab3d218db870a 394 Gene3D G3DSA:1.20.1250.20 195 378 1.2E-15 T 11-10-2018 dqs_0651 5d5f83ee132cdc5bb37ab3d218db870a 394 Gene3D G3DSA:1.20.1250.20 3 180 1.7E-27 T 11-10-2018 dqs_0651 5d5f83ee132cdc5bb37ab3d218db870a 394 SUPERFAMILY SSF103473 4 376 5.49E-52 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2959 5ae52104ffe1ca05e88977d47e91b6f2 164 Gene3D G3DSA:3.40.630.30 1 142 2.6E-18 T 11-10-2018 dqs_2959 5ae52104ffe1ca05e88977d47e91b6f2 164 SUPERFAMILY SSF55729 3 135 4.4E-18 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_2959 5ae52104ffe1ca05e88977d47e91b6f2 164 Pfam PF00583 Acetyltransferase (GNAT) family 28 131 2.2E-6 T 11-10-2018 IPR000182 GNAT domain dqs_3754 e5f827f2182fae78fd8d9e578a1e84b8 206 PIRSF PIRSF006305 1 205 2.1E-47 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 dqs_3754 e5f827f2182fae78fd8d9e578a1e84b8 206 TIGRFAM TIGR00172 maf: septum formation protein Maf 5 199 3.7E-46 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 dqs_3754 e5f827f2182fae78fd8d9e578a1e84b8 206 Gene3D G3DSA:3.90.950.10 3 203 3.8E-66 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like dqs_3754 e5f827f2182fae78fd8d9e578a1e84b8 206 Hamap MF_00528 Septum formation protein Maf [maf]. 7 206 32.119 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 dqs_3754 e5f827f2182fae78fd8d9e578a1e84b8 206 Pfam PF02545 Maf-like protein 7 201 9.5E-54 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 dqs_3754 e5f827f2182fae78fd8d9e578a1e84b8 206 SUPERFAMILY SSF52972 5 200 1.67E-57 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 Pfam PF03466 LysR substrate binding domain 89 294 1.4E-50 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 Gene3D G3DSA:3.40.190.10 92 290 3.4E-72 T 11-10-2018 dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 9.0E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 Gene3D G3DSA:3.40.190.10 164 265 3.4E-72 T 11-10-2018 dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 Gene3D G3DSA:1.10.10.10 2 86 9.3E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 SUPERFAMILY SSF53850 91 297 1.23E-52 T 11-10-2018 dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 SUPERFAMILY SSF46785 7 86 1.57E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.6E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.6E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1362 7420fb2cf7b5afa36ee3d5baf5966159 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.6E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1201 eaa920ea60429e4cc4eb75c8a2120a21 336 Pfam PF13406 Transglycosylase SLT domain 26 321 1.9E-94 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 dqs_1201 eaa920ea60429e4cc4eb75c8a2120a21 336 SUPERFAMILY SSF53955 12 324 9.75E-84 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_1201 eaa920ea60429e4cc4eb75c8a2120a21 336 Gene3D G3DSA:1.10.530.10 67 322 9.3E-105 T 11-10-2018 dqs_1201 eaa920ea60429e4cc4eb75c8a2120a21 336 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 31 323 5.2E-106 T 11-10-2018 IPR011757 Lytic transglycosylase MltB dqs_1201 eaa920ea60429e4cc4eb75c8a2120a21 336 Gene3D G3DSA:1.10.8.350 29 196 9.3E-105 T 11-10-2018 dqs_3988 45c8c4dc553e9bef090705acf05df60f 253 Gene3D G3DSA:3.40.190.10 107 213 8.5E-82 T 11-10-2018 dqs_3988 45c8c4dc553e9bef090705acf05df60f 253 Pfam PF13531 Bacterial extracellular solute-binding protein 29 251 4.7E-47 T 11-10-2018 dqs_3988 45c8c4dc553e9bef090705acf05df60f 253 SUPERFAMILY SSF53850 27 251 1.65E-62 T 11-10-2018 dqs_3988 45c8c4dc553e9bef090705acf05df60f 253 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 33 250 1.8E-78 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 dqs_3988 45c8c4dc553e9bef090705acf05df60f 253 Gene3D G3DSA:3.40.190.10 32 251 8.5E-82 T 11-10-2018 dqs_3988 45c8c4dc553e9bef090705acf05df60f 253 PIRSF PIRSF004846 1 253 1.5E-50 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 dqs_2523 e9346968bfe94f5fb92164267d61ffd4 457 Gene3D G3DSA:3.40.50.12780 17 349 2.1E-75 T 11-10-2018 dqs_2523 e9346968bfe94f5fb92164267d61ffd4 457 Gene3D G3DSA:3.30.300.30 350 452 7.2E-19 T 11-10-2018 dqs_2523 e9346968bfe94f5fb92164267d61ffd4 457 Pfam PF14535 AMP-binding enzyme C-terminal domain 358 448 1.1E-7 T 11-10-2018 IPR028154 AMP-dependent ligase, C-terminal dqs_2523 e9346968bfe94f5fb92164267d61ffd4 457 SUPERFAMILY SSF56801 77 410 1.57E-28 T 11-10-2018 dqs_1649 c3692fbcc745d2f76a22b7bc898b387f 121 Pfam PF03692 Putative zinc- or iron-chelating domain 6 98 6.1E-9 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein dqs_0420 41774e2bcfecbb8bc720ccf49530af74 422 SMART SM00283 116 356 1.3E-19 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0420 41774e2bcfecbb8bc720ccf49530af74 422 Gene3D G3DSA:1.10.287.950 73 380 2.1E-40 T 11-10-2018 dqs_0420 41774e2bcfecbb8bc720ccf49530af74 422 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 189 324 1.7E-26 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0420 41774e2bcfecbb8bc720ccf49530af74 422 SUPERFAMILY SSF58104 97 370 1.7E-39 T 11-10-2018 dqs_2892 79a880988ea92d5f0ebec4635a05d134 442 Gene3D G3DSA:3.10.450.350 177 418 1.6E-95 T 11-10-2018 dqs_2892 79a880988ea92d5f0ebec4635a05d134 442 Gene3D G3DSA:3.10.450.350 64 161 4.5E-16 T 11-10-2018 dqs_2892 79a880988ea92d5f0ebec4635a05d134 442 Gene3D G3DSA:2.70.70.10 274 404 1.6E-95 T 11-10-2018 IPR011055 Duplicated hybrid motif dqs_2892 79a880988ea92d5f0ebec4635a05d134 442 Pfam PF01551 Peptidase family M23 302 398 2.0E-32 T 11-10-2018 IPR016047 Peptidase M23 dqs_2892 79a880988ea92d5f0ebec4635a05d134 442 SUPERFAMILY SSF51261 153 400 2.41E-69 T 11-10-2018 IPR011055 Duplicated hybrid motif dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 PRINTS PR00094 Adenylate kinase signature 32 46 2.3E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 PRINTS PR00094 Adenylate kinase signature 81 97 2.3E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 PRINTS PR00094 Adenylate kinase signature 173 187 2.3E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 PRINTS PR00094 Adenylate kinase signature 4 17 2.3E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 PRINTS PR00094 Adenylate kinase signature 156 171 2.3E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 Gene3D G3DSA:3.40.50.300 1 217 1.5E-76 T 11-10-2018 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 SUPERFAMILY SSF52540 1 188 3.8E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 Pfam PF00406 Adenylate kinase 5 185 3.3E-58 T 11-10-2018 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 Pfam PF05191 Adenylate kinase, active site lid 123 158 2.1E-16 T 11-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 TIGRFAM TIGR01351 adk: adenylate kinase 2 193 4.7E-74 T 11-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 dqs_1596 0b2d121c7b4637155ceceb3050a999fd 217 Hamap MF_00235 Adenylate kinase [adk]. 1 217 53.669 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Pfam PF00580 UvrD/REP helicase N-terminal domain 17 156 1.7E-25 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Pfam PF00580 UvrD/REP helicase N-terminal domain 340 451 2.5E-28 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Gene3D G3DSA:1.10.3170.10 154 362 1.1E-114 T 11-10-2018 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Gene3D G3DSA:1.10.486.10 612 753 1.5E-118 T 11-10-2018 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Gene3D G3DSA:3.40.50.300 459 875 1.5E-118 T 11-10-2018 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 10 1226 1.5E-248 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Gene3D G3DSA:3.40.50.300 10 450 1.1E-114 T 11-10-2018 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Pfam PF13361 UvrD-like helicase C-terminal domain 708 848 2.2E-13 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 SUPERFAMILY SSF52540 14 851 5.05E-108 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 8 1227 19.928 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Pfam PF12705 PD-(D/E)XK nuclease superfamily 996 1193 2.2E-6 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type dqs_3995 945e71b58948322d0cd4f929803385c3 1241 Gene3D G3DSA:3.90.320.10 938 1232 2.2E-86 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal dqs_3995 945e71b58948322d0cd4f929803385c3 1241 SUPERFAMILY SSF52980 944 1227 5.25E-72 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 SUPERFAMILY SSF52200 4 113 8.5E-20 T 11-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 SUPERFAMILY SSF69848 244 320 3.14E-18 T 11-10-2018 IPR036609 LCCL domain superfamily dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 Gene3D G3DSA:3.40.50.10140 2 130 1.5E-18 T 11-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 Pfam PF13676 TIR domain 6 102 5.9E-20 T 11-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 SMART SM00603 244 309 3.8E-6 T 11-10-2018 IPR004043 LCCL domain dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 SMART SM00603 328 411 2.7E-9 T 11-10-2018 IPR004043 LCCL domain dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 Gene3D G3DSA:2.170.130.20 338 423 7.0E-21 T 11-10-2018 IPR036609 LCCL domain superfamily dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 Gene3D G3DSA:2.170.130.20 237 321 6.5E-21 T 11-10-2018 IPR036609 LCCL domain superfamily dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 SUPERFAMILY SSF69848 348 422 2.22E-17 T 11-10-2018 IPR036609 LCCL domain superfamily dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 SMART SM00255 2 131 0.0037 T 11-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 Pfam PF03815 LCCL domain 342 414 1.9E-15 T 11-10-2018 IPR004043 LCCL domain dqs_1379 52567620c824c00384d1ac7bef0f28ad 423 Pfam PF03815 LCCL domain 248 312 2.5E-16 T 11-10-2018 IPR004043 LCCL domain dqs_3128 d8ffa5a7679f00633d8eb76c1fef98dc 301 Gene3D G3DSA:1.10.10.10 2 91 1.1E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3128 d8ffa5a7679f00633d8eb76c1fef98dc 301 Gene3D G3DSA:3.40.190.10 92 292 3.9E-54 T 11-10-2018 dqs_3128 d8ffa5a7679f00633d8eb76c1fef98dc 301 SUPERFAMILY SSF53850 89 298 1.1E-39 T 11-10-2018 dqs_3128 d8ffa5a7679f00633d8eb76c1fef98dc 301 Pfam PF03466 LysR substrate binding domain 88 295 3.9E-38 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3128 d8ffa5a7679f00633d8eb76c1fef98dc 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 5.7E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3128 d8ffa5a7679f00633d8eb76c1fef98dc 301 Gene3D G3DSA:3.40.190.10 165 266 3.9E-54 T 11-10-2018 dqs_3128 d8ffa5a7679f00633d8eb76c1fef98dc 301 SUPERFAMILY SSF46785 3 86 3.6E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2835 b6aeb230434e10a3c00cadd52724165c 369 Pfam PF00465 Iron-containing alcohol dehydrogenase 27 351 9.6E-87 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 dqs_2835 b6aeb230434e10a3c00cadd52724165c 369 Gene3D G3DSA:1.20.1090.10 185 368 1.8E-37 T 11-10-2018 dqs_2835 b6aeb230434e10a3c00cadd52724165c 369 TIGRFAM TIGR03405 Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase 8 350 2.3E-160 T 11-10-2018 IPR017775 Alcohol dehydrogenase, iron-type, phosphonate metabolism-associated dqs_2835 b6aeb230434e10a3c00cadd52724165c 369 SUPERFAMILY SSF56796 22 358 1.31E-83 T 11-10-2018 dqs_2835 b6aeb230434e10a3c00cadd52724165c 369 Gene3D G3DSA:3.40.50.1970 7 184 1.9E-45 T 11-10-2018 dqs_0421 cf8901bceeb7e77d9c8288ae83bdd4dc 121 SUPERFAMILY SSF52172 1 121 2.13E-33 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0421 cf8901bceeb7e77d9c8288ae83bdd4dc 121 Pfam PF00072 Response regulator receiver domain 4 116 5.4E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0421 cf8901bceeb7e77d9c8288ae83bdd4dc 121 SMART SM00448 2 116 7.8E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0421 cf8901bceeb7e77d9c8288ae83bdd4dc 121 Gene3D G3DSA:3.40.50.2300 1 120 1.4E-33 T 11-10-2018 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 321 4.6E-20 T 11-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 PIRSF PIRSF005499 2 699 1.8E-298 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 3.2E-23 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 8.1E-20 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Gene3D G3DSA:2.40.50.140 623 694 2.0E-28 T 11-10-2018 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Pfam PF03725 3' exoribonuclease family, domain 2 462 527 7.1E-5 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 1.1E-10 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 694 30.492 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 SUPERFAMILY SSF55666 454 561 1.25E-28 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 692 0.0 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Gene3D G3DSA:3.30.1370.10 551 622 8.4E-21 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Gene3D G3DSA:3.30.230.70 233 550 1.1E-117 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 SMART SM00322 553 618 1.5E-12 T 11-10-2018 IPR004087 K Homology domain GO:0003676 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 SUPERFAMILY SSF54791 556 641 6.45E-23 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 SUPERFAMILY SSF55666 145 236 1.26E-29 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Pfam PF00013 KH domain 559 615 4.3E-12 T 11-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 SUPERFAMILY SSF54211 4 144 1.11E-51 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Gene3D G3DSA:3.30.230.70 2 229 1.8E-80 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 SMART SM00316 621 691 1.1E-23 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 Pfam PF00575 S1 RNA binding domain 620 691 9.9E-18 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 SUPERFAMILY SSF54211 292 489 3.04E-49 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_2235 c3f730afd915217aa6d01d54caf6e718 699 SUPERFAMILY SSF50249 621 696 5.52E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1216 f3404617b961b3dd034d3cf98e43a6c8 510 Pfam PF00448 SRP54-type protein, GTPase domain 296 484 4.8E-30 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_1216 f3404617b961b3dd034d3cf98e43a6c8 510 Gene3D G3DSA:1.20.120.1380 266 287 3.3E-48 T 11-10-2018 dqs_1216 f3404617b961b3dd034d3cf98e43a6c8 510 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 382 5.0E-78 T 11-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 dqs_1216 f3404617b961b3dd034d3cf98e43a6c8 510 SMART SM00382 293 462 1.8E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1216 f3404617b961b3dd034d3cf98e43a6c8 510 SMART SM00962 294 485 7.1E-43 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_1216 f3404617b961b3dd034d3cf98e43a6c8 510 SUPERFAMILY SSF52540 290 482 1.12E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1216 f3404617b961b3dd034d3cf98e43a6c8 510 Gene3D G3DSA:3.40.50.300 288 472 3.3E-48 T 11-10-2018 dqs_1514 2d4f1cca34fca658706389a79e292fa9 320 Gene3D G3DSA:1.10.3720.10 71 316 8.2E-32 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1514 2d4f1cca34fca658706389a79e292fa9 320 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 18 311 5.4E-91 T 11-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 dqs_1514 2d4f1cca34fca658706389a79e292fa9 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 306 1.2E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_1514 2d4f1cca34fca658706389a79e292fa9 320 SUPERFAMILY SSF161098 27 304 5.89E-33 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3277 db8c1f64c5c6a17dd1ebe3cef7e368d1 275 SUPERFAMILY SSF52374 1 275 2.81E-97 T 11-10-2018 dqs_3277 db8c1f64c5c6a17dd1ebe3cef7e368d1 275 Hamap MF_00158 Pantothenate synthetase [panC]. 2 275 37.482 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 dqs_3277 db8c1f64c5c6a17dd1ebe3cef7e368d1 275 Gene3D G3DSA:3.30.1300.10 175 273 3.3E-31 T 11-10-2018 dqs_3277 db8c1f64c5c6a17dd1ebe3cef7e368d1 275 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 274 8.4E-91 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 dqs_3277 db8c1f64c5c6a17dd1ebe3cef7e368d1 275 Pfam PF02569 Pantoate-beta-alanine ligase 3 273 4.0E-94 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 dqs_3277 db8c1f64c5c6a17dd1ebe3cef7e368d1 275 Gene3D G3DSA:3.40.50.620 2 174 2.9E-67 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1932 65088176faeadddeff678e021c819cc9 759 Pfam PF09335 SNARE associated Golgi protein 592 708 3.9E-16 T 11-10-2018 IPR032816 SNARE associated Golgi protein dqs_1932 65088176faeadddeff678e021c819cc9 759 SUPERFAMILY SSF56024 219 427 1.32E-24 T 11-10-2018 dqs_1932 65088176faeadddeff678e021c819cc9 759 Pfam PF00614 Phospholipase D Active site motif 155 179 1.8E-8 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 dqs_1932 65088176faeadddeff678e021c819cc9 759 Pfam PF13091 PLD-like domain 281 413 9.3E-10 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 dqs_1932 65088176faeadddeff678e021c819cc9 759 Gene3D G3DSA:3.30.870.10 271 430 1.4E-19 T 11-10-2018 dqs_1932 65088176faeadddeff678e021c819cc9 759 Gene3D G3DSA:3.30.870.10 37 240 1.2E-23 T 11-10-2018 dqs_1932 65088176faeadddeff678e021c819cc9 759 SUPERFAMILY SSF56024 29 264 5.89E-31 T 11-10-2018 dqs_1932 65088176faeadddeff678e021c819cc9 759 SMART SM00155 152 179 4.2E-5 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 dqs_1932 65088176faeadddeff678e021c819cc9 759 SMART SM00155 369 396 2.9E-4 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 dqs_0470 0f7d035cb54360e75707bae73a08dc20 400 SUPERFAMILY SSF111352 7 374 1.7E-92 T 11-10-2018 dqs_0470 0f7d035cb54360e75707bae73a08dc20 400 Gene3D G3DSA:1.10.3430.10 2 399 2.9E-96 T 11-10-2018 IPR029020 Ammonium/urea transporter dqs_0470 0f7d035cb54360e75707bae73a08dc20 400 ProSitePatterns PS01219 Ammonium transporters signature. 156 181 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 dqs_0470 0f7d035cb54360e75707bae73a08dc20 400 Pfam PF00909 Ammonium Transporter Family 12 391 1.8E-84 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 dqs_1485 e308611f95c3a532d232941242cb19ae 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 312 1.1E-120 T 11-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 dqs_1485 e308611f95c3a532d232941242cb19ae 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 Gene3D G3DSA:3.50.50.60 8 311 1.7E-122 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 275 293 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 236 257 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 198 214 2.3E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 Gene3D G3DSA:3.50.50.60 117 242 1.7E-122 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1485 e308611f95c3a532d232941242cb19ae 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 301 3.6E-49 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 4.0E-40 T 11-10-2018 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 4.0E-40 T 11-10-2018 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 4.0E-40 T 11-10-2018 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 4.0E-40 T 11-10-2018 dqs_1485 e308611f95c3a532d232941242cb19ae 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 4.0E-40 T 11-10-2018 dqs_1485 e308611f95c3a532d232941242cb19ae 316 SUPERFAMILY SSF51905 1 312 3.28E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1694 211b51e2dfdb7ce3e133e4d4077df0b7 733 SUPERFAMILY SSF53850 33 664 5.43E-84 T 11-10-2018 dqs_1694 211b51e2dfdb7ce3e133e4d4077df0b7 733 Gene3D G3DSA:3.40.190.10 280 392 1.8E-10 T 11-10-2018 dqs_1694 211b51e2dfdb7ce3e133e4d4077df0b7 733 Gene3D G3DSA:3.90.76.10 46 273 2.4E-20 T 11-10-2018 dqs_1694 211b51e2dfdb7ce3e133e4d4077df0b7 733 Gene3D G3DSA:3.10.105.10 404 648 8.3E-47 T 11-10-2018 dqs_1694 211b51e2dfdb7ce3e133e4d4077df0b7 733 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 167 591 3.5E-46 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain dqs_3686 a5a7b636836c3bfe20a64f88adee7049 291 Pfam PF07589 PEP-CTERM motif 266 288 1.1E-5 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_3686 a5a7b636836c3bfe20a64f88adee7049 291 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 267 290 2.1E-5 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_1661 79c7f7375a14767693913dd694e0d01f 452 Gene3D G3DSA:2.30.110.10 4 129 7.7E-19 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_1661 79c7f7375a14767693913dd694e0d01f 452 Gene3D G3DSA:3.30.450.40 140 319 8.8E-27 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_1661 79c7f7375a14767693913dd694e0d01f 452 Pfam PF13185 GAF domain 157 312 3.0E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1661 79c7f7375a14767693913dd694e0d01f 452 SUPERFAMILY SSF55781 141 316 1.33E-24 T 11-10-2018 dqs_1661 79c7f7375a14767693913dd694e0d01f 452 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 5 79 6.3E-5 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 dqs_1661 79c7f7375a14767693913dd694e0d01f 452 SMART SM00065 159 322 4.8E-10 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1661 79c7f7375a14767693913dd694e0d01f 452 SUPERFAMILY SSF50475 5 101 2.48E-11 T 11-10-2018 dqs_0926 4b51b711e0f4def9d205e830f80f34d8 252 Pfam PF13444 Acetyltransferase (GNAT) domain 33 134 6.8E-35 T 11-10-2018 dqs_0926 4b51b711e0f4def9d205e830f80f34d8 252 Gene3D G3DSA:3.40.630.30 21 173 4.6E-28 T 11-10-2018 dqs_0926 4b51b711e0f4def9d205e830f80f34d8 252 SUPERFAMILY SSF55729 18 223 4.39E-46 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3765 b835eae9494fc0a22a6e6023dd1ef2cd 302 Pfam PF03466 LysR substrate binding domain 95 293 1.2E-49 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3765 b835eae9494fc0a22a6e6023dd1ef2cd 302 SUPERFAMILY SSF53850 97 298 1.81E-49 T 11-10-2018 dqs_3765 b835eae9494fc0a22a6e6023dd1ef2cd 302 Gene3D G3DSA:1.10.10.10 10 95 2.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3765 b835eae9494fc0a22a6e6023dd1ef2cd 302 Gene3D G3DSA:3.40.190.290 98 294 1.8E-65 T 11-10-2018 dqs_3765 b835eae9494fc0a22a6e6023dd1ef2cd 302 SUPERFAMILY SSF46785 11 95 5.74E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3765 b835eae9494fc0a22a6e6023dd1ef2cd 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 70 3.4E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1501 711a12d720ff986180a253acd1453704 393 SUPERFAMILY SSF51246 312 383 2.04E-15 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 dqs_1501 711a12d720ff986180a253acd1453704 393 Gene3D G3DSA:3.40.50.20 8 120 8.0E-38 T 11-10-2018 dqs_1501 711a12d720ff986180a253acd1453704 393 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 15 374 39.543 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 dqs_1501 711a12d720ff986180a253acd1453704 393 Pfam PF02222 ATP-grasp domain 122 288 4.7E-45 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type dqs_1501 711a12d720ff986180a253acd1453704 393 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 15 377 4.4E-109 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 dqs_1501 711a12d720ff986180a253acd1453704 393 SUPERFAMILY SSF56059 111 306 8.49E-57 T 11-10-2018 dqs_1501 711a12d720ff986180a253acd1453704 393 SUPERFAMILY SSF52440 8 109 5.47E-26 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_1501 711a12d720ff986180a253acd1453704 393 Gene3D G3DSA:3.30.1490.20 121 187 5.1E-21 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_1501 711a12d720ff986180a253acd1453704 393 Gene3D G3DSA:3.30.470.20 189 389 2.7E-74 T 11-10-2018 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 SUPERFAMILY SSF50715 352 571 4.66E-68 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 SUPERFAMILY SSF52374 21 349 7.19E-96 T 11-10-2018 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 35 349 4.3E-102 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 Gene3D G3DSA:1.10.1160.10 273 351 1.9E-31 T 11-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 352 551 3.7E-54 T 11-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 Gene3D G3DSA:2.40.240.10 360 477 2.2E-43 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 Gene3D G3DSA:3.90.800.10 108 216 4.4E-103 T 11-10-2018 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 Gene3D G3DSA:2.40.240.10 478 572 1.5E-32 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 50 1.5E-8 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 PRINTS PR00987 Glutamyl-tRNA synthetase signature 67 80 1.5E-8 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 PRINTS PR00987 Glutamyl-tRNA synthetase signature 217 227 1.5E-8 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 7 572 52.153 T 11-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 Gene3D G3DSA:3.40.50.620 36 255 4.4E-103 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_0907 7f0516289da5c48d629fd727f1d80aa9 577 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 35 574 1.9E-215 T 11-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 SUPERFAMILY SSF46785 9 69 2.73E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 10 26 8.5E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 37 56 8.5E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 26 37 8.5E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 Gene3D G3DSA:3.30.70.920 65 146 1.8E-19 T 11-10-2018 dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 Gene3D G3DSA:1.10.10.10 11 61 5.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 Pfam PF13412 Winged helix-turn-helix DNA-binding 10 56 8.1E-20 T 11-10-2018 dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 ProSitePatterns PS00519 AsnC-type HTH domain signature. 28 54 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 Pfam PF01037 Lrp/AsnC ligand binding domain 77 149 3.1E-17 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 SMART SM00344 10 119 1.4E-39 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 dqs_0226 312e346a6d1c76ced30e6d4318ec508f 167 SUPERFAMILY SSF54909 72 158 2.15E-17 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_3789 ba8906128459265c241db68f51220c5f 360 SUPERFAMILY SSF56796 4 355 1.05E-120 T 11-10-2018 dqs_3789 ba8906128459265c241db68f51220c5f 360 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 359 72.818 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 dqs_3789 ba8906128459265c241db68f51220c5f 360 PIRSF PIRSF001455 8 358 2.1E-106 T 11-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 dqs_3789 ba8906128459265c241db68f51220c5f 360 Gene3D G3DSA:1.20.1090.10 173 358 1.5E-65 T 11-10-2018 dqs_3789 ba8906128459265c241db68f51220c5f 360 Gene3D G3DSA:3.40.50.1970 1 172 1.9E-66 T 11-10-2018 dqs_3789 ba8906128459265c241db68f51220c5f 360 Pfam PF01761 3-dehydroquinate synthase 67 324 5.9E-109 T 11-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 dqs_3789 ba8906128459265c241db68f51220c5f 360 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 343 2.1E-115 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 dqs_1258 e3e1206f1e6437bb7b3a93d74819f4b1 414 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 27 409 6.6E-115 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 dqs_1258 e3e1206f1e6437bb7b3a93d74819f4b1 414 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 5 414 1.5E-215 T 11-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 dqs_1258 e3e1206f1e6437bb7b3a93d74819f4b1 414 SMART SM01329 26 410 1.4E-178 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 dqs_1258 e3e1206f1e6437bb7b3a93d74819f4b1 414 SUPERFAMILY SSF53659 20 414 7.68E-145 T 11-10-2018 dqs_1258 e3e1206f1e6437bb7b3a93d74819f4b1 414 Gene3D G3DSA:3.40.718.10 1 414 8.3E-181 T 11-10-2018 dqs_1258 e3e1206f1e6437bb7b3a93d74819f4b1 414 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 301 320 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 dqs_2471 fbaf8cecde5b888d82812dd59b2be78d 325 Gene3D G3DSA:2.120.10.30 24 322 4.3E-80 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like dqs_2471 fbaf8cecde5b888d82812dd59b2be78d 325 SUPERFAMILY SSF63829 23 313 4.14E-57 T 11-10-2018 dqs_2471 fbaf8cecde5b888d82812dd59b2be78d 325 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 51 305 5.1E-45 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region dqs_4108 e69f82a36fa633e321b00b0d0873e488 407 Pfam PF06969 HemN C-terminal domain 334 394 7.8E-16 T 11-10-2018 IPR010723 HemN, C-terminal dqs_4108 e69f82a36fa633e321b00b0d0873e488 407 SUPERFAMILY SSF102114 28 405 1.16E-107 T 11-10-2018 dqs_4108 e69f82a36fa633e321b00b0d0873e488 407 SMART SM00729 31 248 3.4E-46 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_4108 e69f82a36fa633e321b00b0d0873e488 407 Gene3D G3DSA:3.80.30.20 13 329 3.0E-94 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe dqs_4108 e69f82a36fa633e321b00b0d0873e488 407 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 33 397 6.7E-107 T 11-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 dqs_4108 e69f82a36fa633e321b00b0d0873e488 407 Pfam PF04055 Radical SAM superfamily 36 198 4.4E-16 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_2938 1356a00a617171a80becca9288d0f2da 433 SUPERFAMILY SSF51905 1 379 1.0E-45 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2938 1356a00a617171a80becca9288d0f2da 433 Pfam PF01494 FAD binding domain 5 193 1.4E-9 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 dqs_2938 1356a00a617171a80becca9288d0f2da 433 SUPERFAMILY SSF54373 182 285 7.06E-23 T 11-10-2018 dqs_2938 1356a00a617171a80becca9288d0f2da 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.7E-6 T 11-10-2018 dqs_2938 1356a00a617171a80becca9288d0f2da 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 1.7E-6 T 11-10-2018 dqs_2938 1356a00a617171a80becca9288d0f2da 433 Gene3D G3DSA:3.50.50.60 1 414 1.1E-67 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2897 a46c191af37fd287716aa6f548216f21 206 Gene3D G3DSA:1.20.1260.10 37 203 4.9E-7 T 11-10-2018 IPR012347 Ferritin-like dqs_2897 a46c191af37fd287716aa6f548216f21 206 SUPERFAMILY SSF47240 43 178 3.52E-17 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_2897 a46c191af37fd287716aa6f548216f21 206 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 45 205 5.9E-42 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 dqs_2897 a46c191af37fd287716aa6f548216f21 206 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 6 206 30.853 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 dqs_0885 934e597bd4e3844b62bb8551a63e73bc 416 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 414 8.8E-179 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0885 934e597bd4e3844b62bb8551a63e73bc 416 SUPERFAMILY SSF55205 1 415 1.64E-141 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 dqs_0885 934e597bd4e3844b62bb8551a63e73bc 416 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 405 3.0E-112 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 dqs_0885 934e597bd4e3844b62bb8551a63e73bc 416 Gene3D G3DSA:3.65.10.10 6 412 7.5E-169 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 dqs_0885 934e597bd4e3844b62bb8551a63e73bc 416 Gene3D G3DSA:3.65.10.10 21 228 7.5E-169 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 dqs_0885 934e597bd4e3844b62bb8551a63e73bc 416 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 415 45.188 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 Pfam PF04055 Radical SAM superfamily 358 563 2.3E-19 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 Pfam PF08497 Radical SAM N-terminal 1 357 2.5E-135 T 11-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 SMART SM00729 354 607 2.7E-9 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 SUPERFAMILY SSF102114 356 590 1.7E-13 T 11-10-2018 dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 Pfam PF11842 Domain of unknown function (DUF3362) 572 681 6.3E-46 T 11-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 1 624 47.279 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 358 378 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 1 622 1.3E-249 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 dqs_1630 7c865a35ee565fa9d9f852eb79f550e6 709 Gene3D G3DSA:3.80.30.20 354 613 2.4E-14 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe dqs_0114 a42ce28c473053690599f355b861d5ee 293 Gene3D G3DSA:3.30.450.20 43 170 3.2E-15 T 11-10-2018 dqs_0114 a42ce28c473053690599f355b861d5ee 293 Gene3D G3DSA:3.30.450.20 171 293 4.7E-19 T 11-10-2018 dqs_0114 a42ce28c473053690599f355b861d5ee 293 SMART SM01049 166 245 4.5E-6 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_0114 a42ce28c473053690599f355b861d5ee 293 SMART SM01049 44 117 0.027 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_0114 a42ce28c473053690599f355b861d5ee 293 Pfam PF17200 Single Cache domain 2 77 152 1.7E-12 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_0114 a42ce28c473053690599f355b861d5ee 293 Pfam PF17200 Single Cache domain 2 168 279 2.2E-15 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_0425 e6f95c751db94a86852d7d8e509a6615 220 Pfam PF13394 4Fe-4S single cluster domain 33 113 2.6E-9 T 11-10-2018 dqs_0425 e6f95c751db94a86852d7d8e509a6615 220 Pfam PF04055 Radical SAM superfamily 34 111 8.7E-12 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_0425 e6f95c751db94a86852d7d8e509a6615 220 Gene3D G3DSA:3.20.20.70 11 214 5.6E-35 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0425 e6f95c751db94a86852d7d8e509a6615 220 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 11 220 2.4E-106 T 11-10-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE dqs_0425 e6f95c751db94a86852d7d8e509a6615 220 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 11 217 37.003 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 dqs_0425 e6f95c751db94a86852d7d8e509a6615 220 PIRSF PIRSF000370 9 220 2.8E-70 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 dqs_0425 e6f95c751db94a86852d7d8e509a6615 220 SUPERFAMILY SSF102114 33 110 2.09E-12 T 11-10-2018 dqs_2159 efce4233a13cfa0cdb5f7d01fd578191 424 SUPERFAMILY SSF53383 23 423 6.66E-87 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2159 efce4233a13cfa0cdb5f7d01fd578191 424 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 23 420 4.4E-192 T 11-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 dqs_2159 efce4233a13cfa0cdb5f7d01fd578191 424 Pfam PF00155 Aminotransferase class I and II 54 417 6.0E-45 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_2159 efce4233a13cfa0cdb5f7d01fd578191 424 Gene3D G3DSA:3.40.640.10 65 313 1.3E-112 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2159 efce4233a13cfa0cdb5f7d01fd578191 424 Gene3D G3DSA:3.90.1150.10 35 410 1.3E-112 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2651 32c3664016155a45c8b009df61170411 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 dqs_2651 32c3664016155a45c8b009df61170411 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 218 9.2E-38 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_2651 32c3664016155a45c8b009df61170411 261 Gene3D G3DSA:1.10.12.10 205 259 1.3E-20 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_2651 32c3664016155a45c8b009df61170411 261 Gene3D G3DSA:3.90.226.10 3 204 1.0E-61 T 11-10-2018 dqs_2651 32c3664016155a45c8b009df61170411 261 SUPERFAMILY SSF52096 15 257 6.45E-64 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0978 e5d6039622806c59797d6b4bd9386fe8 370 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 363 2.8E-166 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 dqs_0978 e5d6039622806c59797d6b4bd9386fe8 370 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 363 1.8E-157 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 dqs_0978 e5d6039622806c59797d6b4bd9386fe8 370 Pfam PF01702 Queuine tRNA-ribosyltransferase 127 361 3.5E-90 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 dqs_0978 e5d6039622806c59797d6b4bd9386fe8 370 Gene3D G3DSA:3.20.20.105 1 368 1.1E-163 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 dqs_0978 e5d6039622806c59797d6b4bd9386fe8 370 SUPERFAMILY SSF51713 1 362 1.12E-158 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 dqs_0978 e5d6039622806c59797d6b4bd9386fe8 370 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 55.788 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 dqs_2953 2d41b54456714716d4a966acac894c66 329 PIRSF PIRSF000114 1 329 4.9E-97 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 186 207 - T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 SUPERFAMILY SSF51735 3 178 2.6E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2953 2d41b54456714716d4a966acac894c66 329 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 178 318 6.4E-50 T 11-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 5 158 2.3E-42 T 11-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 Gene3D G3DSA:3.40.50.720 1 185 5.1E-54 T 11-10-2018 dqs_2953 2d41b54456714716d4a966acac894c66 329 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 57 84 4.8E-40 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 131 151 4.8E-40 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 8 25 4.8E-40 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 236 253 4.8E-40 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 171 195 4.8E-40 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 196 220 4.8E-40 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 4 320 36.461 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 dqs_2953 2d41b54456714716d4a966acac894c66 329 SUPERFAMILY SSF48179 178 329 5.1E-54 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_2953 2d41b54456714716d4a966acac894c66 329 Gene3D G3DSA:1.10.1040.10 187 329 3.8E-50 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 1.4E-222 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 6.3E-91 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 6.3E-91 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 6.3E-91 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 6.3E-91 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 6.3E-91 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 6.3E-91 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 6.3E-91 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 6.3E-91 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 Pfam PF01578 Cytochrome C assembly protein 89 295 6.5E-53 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 638 2.1E-127 T 11-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 6.9E-59 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 6.9E-59 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 6.9E-59 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 6.9E-59 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 6.9E-59 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 6.9E-59 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4074 7f46b5a50f2627335dabffdf7ef58b1b 658 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 6.9E-59 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_3146 e5aeed1ee3bb42276a3d0dd7c5f431a1 465 TIGRFAM TIGR03105 gln_synth_III: glutamine synthetase, type III 30 463 6.3E-191 T 11-10-2018 IPR017536 Glutamine synthetase, type III dqs_3146 e5aeed1ee3bb42276a3d0dd7c5f431a1 465 SUPERFAMILY SSF55931 122 463 2.81E-109 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 dqs_3146 e5aeed1ee3bb42276a3d0dd7c5f431a1 465 Gene3D G3DSA:3.10.20.70 23 124 3.7E-14 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_3146 e5aeed1ee3bb42276a3d0dd7c5f431a1 465 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 253 268 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 dqs_3146 e5aeed1ee3bb42276a3d0dd7c5f431a1 465 Pfam PF00120 Glutamine synthetase, catalytic domain 123 461 9.2E-107 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_3146 e5aeed1ee3bb42276a3d0dd7c5f431a1 465 Gene3D G3DSA:3.30.590.10 126 465 6.2E-112 T 11-10-2018 dqs_3146 e5aeed1ee3bb42276a3d0dd7c5f431a1 465 SUPERFAMILY SSF54368 26 119 7.46E-21 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_3146 e5aeed1ee3bb42276a3d0dd7c5f431a1 465 SMART SM01230 122 376 7.7E-115 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 dqs_0131 11af313f194c2831bf6d92460ece08f1 318 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 296 5.3E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_0748 1548c4c5139162081d3674448a9081fa 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 9.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0748 1548c4c5139162081d3674448a9081fa 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 9.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0748 1548c4c5139162081d3674448a9081fa 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 9.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0748 1548c4c5139162081d3674448a9081fa 317 Gene3D G3DSA:3.40.190.10 94 300 5.5E-63 T 11-10-2018 dqs_0748 1548c4c5139162081d3674448a9081fa 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 70 3.1E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0748 1548c4c5139162081d3674448a9081fa 317 SUPERFAMILY SSF53850 94 301 5.43E-42 T 11-10-2018 dqs_0748 1548c4c5139162081d3674448a9081fa 317 SUPERFAMILY SSF46785 9 87 4.77E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0748 1548c4c5139162081d3674448a9081fa 317 Gene3D G3DSA:3.40.190.10 176 275 5.5E-63 T 11-10-2018 dqs_0748 1548c4c5139162081d3674448a9081fa 317 Pfam PF03466 LysR substrate binding domain 99 304 5.4E-25 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0748 1548c4c5139162081d3674448a9081fa 317 Gene3D G3DSA:1.10.10.10 5 90 8.5E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 1.2E-34 T 11-10-2018 IPR027486 Ribosomal protein S10 domain dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 SMART SM01403 7 101 2.0E-54 T 11-10-2018 IPR027486 Ribosomal protein S10 domain dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 11-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 SUPERFAMILY SSF54999 5 102 1.24E-36 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 Gene3D G3DSA:3.30.70.600 1 102 9.1E-36 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.977 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.1E-44 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 6.7E-17 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 6.7E-17 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3557 aa866d4b8e203fbb074e35831d109f63 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 6.7E-17 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_1895 23ce41c5857e300697fb4a91b4cad4ce 489 Gene3D G3DSA:3.30.470.20 364 472 2.5E-17 T 11-10-2018 dqs_1895 23ce41c5857e300697fb4a91b4cad4ce 489 SUPERFAMILY SSF56059 273 477 5.5E-32 T 11-10-2018 dqs_1895 23ce41c5857e300697fb4a91b4cad4ce 489 Pfam PF08443 RimK-like ATP-grasp domain 281 456 1.0E-7 T 11-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 dqs_1895 23ce41c5857e300697fb4a91b4cad4ce 489 Gene3D G3DSA:3.30.1490.20 283 363 7.9E-6 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_1895 23ce41c5857e300697fb4a91b4cad4ce 489 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 26 172 3.0E-49 T 11-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain dqs_3775 9a76b6ecc565a534c22fb0ad2e67452c 402 Pfam PF07690 Major Facilitator Superfamily 9 319 5.9E-38 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_3775 9a76b6ecc565a534c22fb0ad2e67452c 402 PRINTS PR01035 Tetracycline resistance protein signature 10 26 3.0E-6 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 dqs_3775 9a76b6ecc565a534c22fb0ad2e67452c 402 PRINTS PR01035 Tetracycline resistance protein signature 158 178 3.0E-6 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 dqs_3775 9a76b6ecc565a534c22fb0ad2e67452c 402 PRINTS PR01035 Tetracycline resistance protein signature 98 119 3.0E-6 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 dqs_3775 9a76b6ecc565a534c22fb0ad2e67452c 402 PRINTS PR01035 Tetracycline resistance protein signature 40 59 3.0E-6 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 dqs_3775 9a76b6ecc565a534c22fb0ad2e67452c 402 Gene3D G3DSA:1.20.1250.20 3 377 2.4E-49 T 11-10-2018 dqs_3775 9a76b6ecc565a534c22fb0ad2e67452c 402 SUPERFAMILY SSF103473 3 384 1.15E-61 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2044 cb97db4e685f7d2065c43c51295c85f7 390 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 4 385 49.529 T 11-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 dqs_2044 cb97db4e685f7d2065c43c51295c85f7 390 SUPERFAMILY SSF53383 34 383 4.79E-100 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2044 cb97db4e685f7d2065c43c51295c85f7 390 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 21 381 2.4E-140 T 11-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 dqs_2044 cb97db4e685f7d2065c43c51295c85f7 390 Gene3D G3DSA:3.90.1150.10 38 374 4.8E-129 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2044 cb97db4e685f7d2065c43c51295c85f7 390 Gene3D G3DSA:3.40.640.10 58 287 4.8E-129 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2044 cb97db4e685f7d2065c43c51295c85f7 390 Pfam PF00155 Aminotransferase class I and II 41 380 3.1E-57 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_0303 4d903790e9c0f7207d512ae577d17ffa 334 Pfam PF16169 Domain of unknown function (DUF4872) 155 330 2.5E-51 T 11-10-2018 IPR032369 Domain of unknown function DUF4872 dqs_0303 4d903790e9c0f7207d512ae577d17ffa 334 Pfam PF14399 Butirosin biosynthesis protein H, N-terminal 11 144 5.5E-44 T 11-10-2018 IPR026935 Butirosin biosynthesis protein H, N-terminal KEGG: 00524+2.3.2.19|MetaCyc: PWY-7019 dqs_1397 d19821b5e8f82ec9bf30f08d704b0687 872 Gene3D G3DSA:3.90.550.10 416 639 1.0E-60 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1397 d19821b5e8f82ec9bf30f08d704b0687 872 Gene3D G3DSA:3.20.20.80 41 318 3.8E-11 T 11-10-2018 dqs_1397 d19821b5e8f82ec9bf30f08d704b0687 872 SUPERFAMILY SSF53448 412 689 2.25E-52 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1397 d19821b5e8f82ec9bf30f08d704b0687 872 Pfam PF13641 Glycosyltransferase like family 2 426 655 1.4E-26 T 11-10-2018 dqs_1397 d19821b5e8f82ec9bf30f08d704b0687 872 SUPERFAMILY SSF51445 56 306 1.82E-44 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_2394 915d82882f473fc2f5e7bd2c45d3f4bb 272 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 70 83 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site dqs_2394 915d82882f473fc2f5e7bd2c45d3f4bb 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 48 265 4.1E-48 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_2394 915d82882f473fc2f5e7bd2c45d3f4bb 272 SUPERFAMILY SSF53850 39 270 1.78E-53 T 11-10-2018 dqs_2394 915d82882f473fc2f5e7bd2c45d3f4bb 272 SMART SM00062 47 267 1.6E-42 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_2394 915d82882f473fc2f5e7bd2c45d3f4bb 272 Gene3D G3DSA:3.40.190.10 42 259 2.3E-53 T 11-10-2018 dqs_2394 915d82882f473fc2f5e7bd2c45d3f4bb 272 Gene3D G3DSA:3.40.190.10 134 225 2.3E-53 T 11-10-2018 dqs_1717 04312ae66ec8fd89d3687c15792535f5 334 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 1 330 7.3E-84 T 11-10-2018 IPR003770 Endolytic murein transglycosylase dqs_1717 04312ae66ec8fd89d3687c15792535f5 334 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 8 329 32.825 T 11-10-2018 IPR003770 Endolytic murein transglycosylase dqs_1717 04312ae66ec8fd89d3687c15792535f5 334 Gene3D G3DSA:3.30.160.60 299 333 9.6E-11 T 11-10-2018 dqs_1717 04312ae66ec8fd89d3687c15792535f5 334 Pfam PF02618 YceG-like family 40 325 3.4E-79 T 11-10-2018 IPR003770 Endolytic murein transglycosylase dqs_3607 3c28ac00e0cfb0e04fb64af50d59b1b9 98 SMART SM01152 9 85 1.3E-38 T 11-10-2018 IPR003746 Protein of unknown function DUF167 dqs_3607 3c28ac00e0cfb0e04fb64af50d59b1b9 98 SUPERFAMILY SSF69786 5 86 3.92E-28 T 11-10-2018 IPR036591 YggU-like superfamily dqs_3607 3c28ac00e0cfb0e04fb64af50d59b1b9 98 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 5 85 3.1E-15 T 11-10-2018 IPR005228 Conserved hypothetical protein CHP00251 dqs_3607 3c28ac00e0cfb0e04fb64af50d59b1b9 98 Hamap MF_00634 UPF0235 protein YggU [yggU]. 9 96 19.907 T 11-10-2018 IPR003746 Protein of unknown function DUF167 dqs_3607 3c28ac00e0cfb0e04fb64af50d59b1b9 98 Gene3D G3DSA:3.30.1200.10 1 94 4.9E-31 T 11-10-2018 IPR036591 YggU-like superfamily dqs_3607 3c28ac00e0cfb0e04fb64af50d59b1b9 98 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 13 84 6.2E-27 T 11-10-2018 IPR003746 Protein of unknown function DUF167 dqs_1500 a35c210ae472e2c36133637e68c1636b 170 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 12 164 1.8E-66 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 dqs_1500 a35c210ae472e2c36133637e68c1636b 170 Gene3D G3DSA:3.40.50.7700 1 170 1.4E-75 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 dqs_1500 a35c210ae472e2c36133637e68c1636b 170 SMART SM01001 10 161 4.6E-104 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 dqs_1500 a35c210ae472e2c36133637e68c1636b 170 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 12 165 33.146 T 11-10-2018 IPR033747 Class I PurE dqs_1500 a35c210ae472e2c36133637e68c1636b 170 SUPERFAMILY SSF52255 11 165 1.02E-66 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 dqs_1500 a35c210ae472e2c36133637e68c1636b 170 Pfam PF00731 AIR carboxylase 12 158 1.0E-64 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 dqs_1500 a35c210ae472e2c36133637e68c1636b 170 PIRSF PIRSF001338 7 166 1.5E-66 T 11-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 dqs_3386 d19e0dd30b0f5b3ba8e186d4f1b999d3 249 Pfam PF13414 TPR repeat 136 172 8.8E-9 T 11-10-2018 dqs_3386 d19e0dd30b0f5b3ba8e186d4f1b999d3 249 SUPERFAMILY SSF48452 122 187 1.3E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3386 d19e0dd30b0f5b3ba8e186d4f1b999d3 249 Gene3D G3DSA:1.25.40.10 74 190 5.6E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3296 42db2def6ce6cc96e1fdb5978cb4e1cb 199 Gene3D G3DSA:3.40.50.360 1 196 6.4E-61 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_3296 42db2def6ce6cc96e1fdb5978cb4e1cb 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 4 195 2.6E-44 T 11-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 dqs_3296 42db2def6ce6cc96e1fdb5978cb4e1cb 199 SUPERFAMILY SSF52218 1 195 9.64E-56 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_1647 69877b8a59413f0f7261bfcceb4379d7 236 SUPERFAMILY SSF103642 214 233 2.94E-8 T 11-10-2018 dqs_1647 69877b8a59413f0f7261bfcceb4379d7 236 Gene3D G3DSA:3.10.450.50 172 235 9.5E-9 T 11-10-2018 dqs_1647 69877b8a59413f0f7261bfcceb4379d7 236 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 17 190 2.7E-28 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 dqs_1647 69877b8a59413f0f7261bfcceb4379d7 236 Pfam PF03695 Uncharacterised protein family (UPF0149) 17 191 2.9E-26 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 dqs_1647 69877b8a59413f0f7261bfcceb4379d7 236 Pfam PF02810 SEC-C motif 216 233 3.3E-11 T 11-10-2018 IPR004027 SEC-C motif dqs_1647 69877b8a59413f0f7261bfcceb4379d7 236 SUPERFAMILY SSF101327 15 188 2.35E-20 T 11-10-2018 IPR036255 YgfB-like superfamily dqs_2872 cd17d92fba7b7eec8920b604f9136f9d 445 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 366 444 2.1E-19 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain dqs_2872 cd17d92fba7b7eec8920b604f9136f9d 445 Gene3D G3DSA:2.60.98.20 156 327 5.0E-21 T 11-10-2018 IPR037058 Flagellar hook protein FlgE superfamily dqs_2872 cd17d92fba7b7eec8920b604f9136f9d 445 Pfam PF00460 Flagella basal body rod protein 3 33 1.3E-10 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 dqs_2872 cd17d92fba7b7eec8920b604f9136f9d 445 Pfam PF07559 Flagellar basal body protein FlaE 196 326 6.3E-21 T 11-10-2018 IPR011491 Flagellar hook protein FlgE dqs_2872 cd17d92fba7b7eec8920b604f9136f9d 445 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site dqs_2872 cd17d92fba7b7eec8920b604f9136f9d 445 SUPERFAMILY SSF117143 80 406 1.44E-67 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like dqs_2872 cd17d92fba7b7eec8920b604f9136f9d 445 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 427 1.4E-97 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G dqs_3502 3ffcd37ed530ecee5e89f15cc0d29a45 293 Gene3D G3DSA:1.10.1040.10 163 290 9.9E-37 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_3502 3ffcd37ed530ecee5e89f15cc0d29a45 293 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 158 2.4E-47 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 dqs_3502 3ffcd37ed530ecee5e89f15cc0d29a45 293 Gene3D G3DSA:3.40.50.720 1 162 5.3E-52 T 11-10-2018 dqs_3502 3ffcd37ed530ecee5e89f15cc0d29a45 293 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 dqs_3502 3ffcd37ed530ecee5e89f15cc0d29a45 293 PIRSF PIRSF000103 1 293 7.4E-74 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 dqs_3502 3ffcd37ed530ecee5e89f15cc0d29a45 293 SUPERFAMILY SSF51735 1 162 2.37E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3502 3ffcd37ed530ecee5e89f15cc0d29a45 293 SUPERFAMILY SSF48179 162 286 5.33E-36 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3502 3ffcd37ed530ecee5e89f15cc0d29a45 293 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 284 2.5E-34 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 dqs_3213 179be3cd79822d50a5472deba2ce7232 229 Pfam PF13280 WYL domain 141 225 3.6E-19 T 11-10-2018 IPR026881 WYL domain dqs_3213 179be3cd79822d50a5472deba2ce7232 229 SUPERFAMILY SSF46785 1 61 9.0E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3213 179be3cd79822d50a5472deba2ce7232 229 Gene3D G3DSA:1.10.10.10 1 63 5.9E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3213 179be3cd79822d50a5472deba2ce7232 229 Pfam PF08279 HTH domain 6 59 2.5E-17 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 SUPERFAMILY SSF52096 165 547 3.98E-64 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 SUPERFAMILY SSF50156 209 333 1.44E-13 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 Pfam PF03572 Peptidase family S41 354 534 1.6E-48 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 541 682 1.4E-31 T 11-10-2018 IPR020992 Tail specific protease, C-terminal dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 SMART SM00228 238 315 3.0E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 SMART SM00245 320 537 5.0E-51 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 193 553 2.3E-86 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 Gene3D G3DSA:2.30.42.10 228 312 7.5E-12 T 11-10-2018 dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 236 308 2.3E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_2468 cd2fb4e4d49157cac052db163ed92df5 700 Gene3D G3DSA:3.90.226.10 321 556 6.5E-55 T 11-10-2018 dqs_3039 fc696594662e2860565ddf9e62ba195a 168 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 1 168 23.663 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 dqs_3039 fc696594662e2860565ddf9e62ba195a 168 Pfam PF05239 PRC-barrel domain 97 162 1.9E-7 T 11-10-2018 IPR027275 PRC-barrel domain dqs_3039 fc696594662e2860565ddf9e62ba195a 168 Pfam PF01782 RimM N-terminal domain 4 90 7.3E-24 T 11-10-2018 IPR002676 RimM, N-terminal GO:0006364 dqs_3039 fc696594662e2860565ddf9e62ba195a 168 SUPERFAMILY SSF50346 99 167 1.67E-19 T 11-10-2018 IPR011033 PRC-barrel-like superfamily dqs_3039 fc696594662e2860565ddf9e62ba195a 168 Gene3D G3DSA:2.40.30.60 1 93 5.4E-25 T 11-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 dqs_3039 fc696594662e2860565ddf9e62ba195a 168 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 1 167 6.7E-48 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 dqs_3039 fc696594662e2860565ddf9e62ba195a 168 SUPERFAMILY SSF50447 2 92 2.79E-20 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_3039 fc696594662e2860565ddf9e62ba195a 168 Gene3D G3DSA:2.30.30.240 95 168 1.8E-26 T 11-10-2018 dqs_0251 4a1b48e9f9e34d5f0e915a93e78cb99e 285 SUPERFAMILY SSF52467 5 274 2.85E-64 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_0251 4a1b48e9f9e34d5f0e915a93e78cb99e 285 Gene3D G3DSA:3.40.50.1220 24 251 1.3E-39 T 11-10-2018 dqs_0251 4a1b48e9f9e34d5f0e915a93e78cb99e 285 Pfam PF02146 Sir2 family 31 196 1.2E-19 T 11-10-2018 IPR003000 Sirtuin family GO:0070403 dqs_0251 4a1b48e9f9e34d5f0e915a93e78cb99e 285 Gene3D G3DSA:3.30.1600.10 40 195 1.3E-39 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily dqs_0327 989c714dea1dcce94a6bd2fa7104755e 253 Gene3D G3DSA:3.40.50.300 5 244 3.4E-57 T 11-10-2018 dqs_0327 989c714dea1dcce94a6bd2fa7104755e 253 SMART SM00382 34 222 2.7E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0327 989c714dea1dcce94a6bd2fa7104755e 253 SUPERFAMILY SSF52540 9 242 7.35E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0327 989c714dea1dcce94a6bd2fa7104755e 253 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 242 4.4E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_0327 989c714dea1dcce94a6bd2fa7104755e 253 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0327 989c714dea1dcce94a6bd2fa7104755e 253 Pfam PF00005 ABC transporter 25 171 1.0E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2654 989c714dea1dcce94a6bd2fa7104755e 253 Gene3D G3DSA:3.40.50.300 5 244 3.4E-57 T 11-10-2018 dqs_2654 989c714dea1dcce94a6bd2fa7104755e 253 SMART SM00382 34 222 2.7E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2654 989c714dea1dcce94a6bd2fa7104755e 253 SUPERFAMILY SSF52540 9 242 7.35E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2654 989c714dea1dcce94a6bd2fa7104755e 253 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 242 4.4E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_2654 989c714dea1dcce94a6bd2fa7104755e 253 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2654 989c714dea1dcce94a6bd2fa7104755e 253 Pfam PF00005 ABC transporter 25 171 1.0E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2941 6856aafdd30e10fb384d8b30d7a41f1f 171 Pfam PF03477 ATP cone domain 50 136 2.3E-15 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 dqs_2941 6856aafdd30e10fb384d8b30d7a41f1f 171 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 145 8.4E-56 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 dqs_2941 6856aafdd30e10fb384d8b30d7a41f1f 171 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 81.588 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 Pfam PF02803 Thiolase, C-terminal domain 296 416 5.4E-44 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 SUPERFAMILY SSF53901 19 294 1.2E-62 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 PIRSF PIRSF000429 14 419 4.1E-110 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 SUPERFAMILY SSF53901 296 416 2.8E-38 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 Gene3D G3DSA:3.40.47.10 143 415 3.0E-125 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 ProSitePatterns PS00099 Thiolases active site. 399 412 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 ProSitePatterns PS00737 Thiolases signature 2. 364 380 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 23 416 3.2E-113 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 Pfam PF00108 Thiolase, N-terminal domain 21 286 1.4E-56 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 dqs_2650 6cd476d7f19996d3e171dd4e268f8baa 419 Gene3D G3DSA:3.40.47.10 23 301 3.0E-125 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_3990 8bd81ce442295a412c5fb90f4f08e27b 142 Pfam PF03459 TOBE domain 4 66 7.3E-16 T 11-10-2018 IPR005116 Transport-associated OB, type 1 dqs_3990 8bd81ce442295a412c5fb90f4f08e27b 142 Pfam PF03459 TOBE domain 76 138 4.4E-17 T 11-10-2018 IPR005116 Transport-associated OB, type 1 dqs_3990 8bd81ce442295a412c5fb90f4f08e27b 142 Gene3D G3DSA:2.40.50.100 1 65 1.5E-27 T 11-10-2018 dqs_3990 8bd81ce442295a412c5fb90f4f08e27b 142 Gene3D G3DSA:2.40.50.100 66 131 7.5E-29 T 11-10-2018 dqs_3990 8bd81ce442295a412c5fb90f4f08e27b 142 SUPERFAMILY SSF50331 1 72 1.53E-22 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_3990 8bd81ce442295a412c5fb90f4f08e27b 142 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 1 69 3.6E-27 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 dqs_3990 8bd81ce442295a412c5fb90f4f08e27b 142 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 73 140 5.2E-24 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 dqs_3990 8bd81ce442295a412c5fb90f4f08e27b 142 SUPERFAMILY SSF50331 48 138 5.32E-21 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_0751 33336d9474139e97e0b13fa12d891179 559 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 69 477 4.2E-61 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 dqs_0751 33336d9474139e97e0b13fa12d891179 559 Gene3D G3DSA:1.20.1730.10 56 558 2.6E-63 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily dqs_0751 33336d9474139e97e0b13fa12d891179 559 Pfam PF00474 Sodium:solute symporter family 69 478 5.8E-107 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 dqs_0751 33336d9474139e97e0b13fa12d891179 559 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 184 209 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 Gene3D G3DSA:2.60.40.10 441 545 1.2E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 SMART SM01360 872 965 2.0E-19 T 11-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 SMART SM01359 657 803 1.7E-30 T 11-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 Gene3D G3DSA:1.50.10.20 1060 1187 2.5E-7 T 11-10-2018 dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 657 803 6.7E-16 T 11-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 Pfam PF00207 Alpha-2-macroglobulin family 872 964 4.7E-15 T 11-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1067 1091 2.4E-4 T 11-10-2018 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 Pfam PF01835 MG2 domain 337 433 3.3E-15 T 11-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 SUPERFAMILY SSF48239 1067 1195 2.59E-6 T 11-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid dqs_0069 fc758e600e3655cc50805ad43160cdc6 1537 Gene3D G3DSA:2.60.40.1930 338 437 4.7E-9 T 11-10-2018 dqs_0389 26554ca1241fc5e74687b3ad9f2ca2e8 509 SUPERFAMILY SSF56112 89 427 7.66E-49 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_0389 26554ca1241fc5e74687b3ad9f2ca2e8 509 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 4 435 7.0E-176 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 dqs_0389 26554ca1241fc5e74687b3ad9f2ca2e8 509 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 1 505 49.835 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 dqs_0389 26554ca1241fc5e74687b3ad9f2ca2e8 509 Pfam PF03109 ABC1 family 109 225 9.9E-35 T 11-10-2018 IPR004147 UbiB domain dqs_2419 a47da16b55dbb25369490be2a877b72b 128 Pfam PF09996 Uncharacterized protein conserved in bacteria (DUF2237) 5 119 1.3E-52 T 11-10-2018 IPR018714 Protein of unknown function DUF2237 dqs_2419 a47da16b55dbb25369490be2a877b72b 128 Gene3D G3DSA:3.30.56.110 1 126 2.8E-52 T 11-10-2018 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 SUPERFAMILY SSF53067 197 376 2.48E-51 T 11-10-2018 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 PIRSF PIRSF003101 1 409 3.0E-156 T 11-10-2018 IPR020823 Cell division protein FtsA dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 Pfam PF14450 Cell division protein FtsA 206 373 7.4E-25 T 11-10-2018 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 SMART SM00842 9 195 7.9E-103 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 Pfam PF02491 SHS2 domain inserted in FTSA 84 161 7.7E-32 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 Gene3D G3DSA:3.30.1490.110 86 168 2.0E-125 T 11-10-2018 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 SUPERFAMILY SSF53067 7 196 9.99E-61 T 11-10-2018 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 Gene3D G3DSA:3.30.420.40 12 371 2.0E-125 T 11-10-2018 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 375 1.0E-147 T 11-10-2018 IPR020823 Cell division protein FtsA dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 Gene3D G3DSA:3.90.640.10 234 299 2.0E-125 T 11-10-2018 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 Hamap MF_02033 Cell division protein FtsA [ftsA]. 5 409 31.222 T 11-10-2018 IPR020823 Cell division protein FtsA dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 Gene3D G3DSA:3.30.420.40 196 351 2.0E-125 T 11-10-2018 dqs_0959 93446adf47d2e08be48521cc3d60ac16 409 Pfam PF14450 Cell division protein FtsA 10 192 5.7E-8 T 11-10-2018 dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 SMART SM00357 3 67 2.1E-32 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 SUPERFAMILY SSF50249 1 65 2.36E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 2.3E-32 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 Gene3D G3DSA:2.40.50.140 1 66 2.1E-31 T 11-10-2018 dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 PRINTS PR00050 Cold shock protein signature 25 34 5.0E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 PRINTS PR00050 Cold shock protein signature 40 58 5.0E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 PRINTS PR00050 Cold shock protein signature 4 19 5.0E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site dqs_1245 9e8e96ff0b263b81921ae48d437f0884 67 PIRSF PIRSF002599 1 67 1.4E-26 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 dqs_2967 c7f86269d4996eae072bd0debb246e33 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.226 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 dqs_2967 c7f86269d4996eae072bd0debb246e33 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 75 6.0E-31 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 dqs_2967 c7f86269d4996eae072bd0debb246e33 90 SUPERFAMILY SSF111148 1 89 1.05E-39 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 dqs_2967 c7f86269d4996eae072bd0debb246e33 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 4.3E-43 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 dqs_2967 c7f86269d4996eae072bd0debb246e33 90 Gene3D G3DSA:1.10.3880.10 1 90 6.3E-40 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 dqs_2967 c7f86269d4996eae072bd0debb246e33 90 PIRSF PIRSF029827 1 90 3.0E-39 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 dqs_2061 7b5d4b0231040bb336d1b71747557bf6 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 26.915 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 dqs_2061 7b5d4b0231040bb336d1b71747557bf6 185 Pfam PF01765 Ribosome recycling factor 20 183 2.5E-61 T 11-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 dqs_2061 7b5d4b0231040bb336d1b71747557bf6 185 Gene3D G3DSA:1.10.132.20 12 182 1.1E-65 T 11-10-2018 dqs_2061 7b5d4b0231040bb336d1b71747557bf6 185 SUPERFAMILY SSF55194 4 184 1.7E-70 T 11-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 dqs_2061 7b5d4b0231040bb336d1b71747557bf6 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 5.5E-69 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 dqs_2061 7b5d4b0231040bb336d1b71747557bf6 185 Gene3D G3DSA:3.30.1360.40 31 105 1.1E-65 T 11-10-2018 dqs_0432 686a8d0fd136590ec45fbe6eb6e8cddc 155 Pfam PF03061 Thioesterase superfamily 29 107 1.3E-14 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 dqs_0432 686a8d0fd136590ec45fbe6eb6e8cddc 155 Gene3D G3DSA:3.10.129.10 8 144 2.6E-43 T 11-10-2018 dqs_0432 686a8d0fd136590ec45fbe6eb6e8cddc 155 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 17 133 1.9E-36 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 dqs_0432 686a8d0fd136590ec45fbe6eb6e8cddc 155 SUPERFAMILY SSF54637 13 141 1.34E-42 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_0432 686a8d0fd136590ec45fbe6eb6e8cddc 155 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 14 138 5.2E-50 T 11-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 dqs_0432 686a8d0fd136590ec45fbe6eb6e8cddc 155 PIRSF PIRSF003230 5 146 3.3E-44 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 Pfam PF05231 MASE1 10 187 4.7E-15 T 11-10-2018 IPR007895 MASE1 dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 SUPERFAMILY SSF55785 526 650 6.28E-5 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 Pfam PF00990 Diguanylate cyclase, GGDEF domain 663 820 2.2E-52 T 11-10-2018 IPR000160 GGDEF domain dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 SMART SM00267 652 824 2.3E-73 T 11-10-2018 IPR000160 GGDEF domain dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 Pfam PF03924 CHASE domain 254 436 2.7E-44 T 11-10-2018 IPR006189 CHASE domain dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 SUPERFAMILY SSF55073 668 824 1.01E-52 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 Gene3D G3DSA:3.30.450.20 533 648 5.6E-11 T 11-10-2018 dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 SMART SM01079 251 444 6.4E-57 T 11-10-2018 IPR006189 CHASE domain dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 Gene3D G3DSA:3.30.70.270 657 837 8.3E-64 T 11-10-2018 dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 Gene3D G3DSA:3.30.450.350 255 460 1.4E-26 T 11-10-2018 dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 660 822 2.9E-45 T 11-10-2018 IPR000160 GGDEF domain dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 SMART SM00052 834 1079 1.9E-121 T 11-10-2018 IPR001633 EAL domain dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 SUPERFAMILY SSF141868 839 1085 2.22E-92 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 Pfam PF00563 EAL domain 840 1074 4.6E-73 T 11-10-2018 IPR001633 EAL domain dqs_1690 8b7fc53534c919f1777e63609307da6b 1090 Gene3D G3DSA:3.20.20.450 838 1090 2.0E-102 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0946 490512a26364ca7cd2a2d8e1f8f3cdb8 147 Pfam PF02381 MraZ protein, putative antitoxin-like 1 73 6.4E-14 T 11-10-2018 IPR020603 MraZ domain dqs_0946 490512a26364ca7cd2a2d8e1f8f3cdb8 147 Pfam PF02381 MraZ protein, putative antitoxin-like 79 130 3.2E-14 T 11-10-2018 IPR020603 MraZ domain dqs_0946 490512a26364ca7cd2a2d8e1f8f3cdb8 147 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 128 4.0E-57 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 dqs_0946 490512a26364ca7cd2a2d8e1f8f3cdb8 147 Gene3D G3DSA:2.40.330.20 1 136 5.8E-38 T 11-10-2018 IPR038619 MraZ superfamily dqs_0946 490512a26364ca7cd2a2d8e1f8f3cdb8 147 SUPERFAMILY SSF89447 1 134 2.41E-40 T 11-10-2018 IPR037914 SpoVT-AbrB domain superfamily dqs_0946 490512a26364ca7cd2a2d8e1f8f3cdb8 147 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 147 48.273 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 dqs_0946 490512a26364ca7cd2a2d8e1f8f3cdb8 147 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 128 3.1E-37 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 dqs_1532 978ec4ef2acadc2b1d33ec789135d927 493 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 487 1.9E-191 T 11-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1532 978ec4ef2acadc2b1d33ec789135d927 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 168 192 6.6E-48 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1532 978ec4ef2acadc2b1d33ec789135d927 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 6.6E-48 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1532 978ec4ef2acadc2b1d33ec789135d927 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 6.6E-48 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1532 978ec4ef2acadc2b1d33ec789135d927 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 6.6E-48 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1532 978ec4ef2acadc2b1d33ec789135d927 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 138 157 6.6E-48 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1532 978ec4ef2acadc2b1d33ec789135d927 493 Pfam PF00361 Proton-conducting membrane transporter 134 418 3.4E-77 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_2115 148bf440976053651fcca6d73104794e 340 SUPERFAMILY SSF63380 109 207 2.15E-22 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_2115 148bf440976053651fcca6d73104794e 340 Gene3D G3DSA:3.40.50.80 203 340 1.1E-26 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2115 148bf440976053651fcca6d73104794e 340 Pfam PF00175 Oxidoreductase NAD-binding domain 215 318 7.7E-13 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 Gene3D G3DSA:2.40.30.10 102 201 2.6E-22 T 11-10-2018 dqs_2115 148bf440976053651fcca6d73104794e 340 SUPERFAMILY SSF54292 4 94 7.01E-21 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2115 148bf440976053651fcca6d73104794e 340 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 154 161 2.9E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 304 312 2.9E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 240 249 2.9E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 2.9E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 86 1.3E-10 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_2115 148bf440976053651fcca6d73104794e 340 SUPERFAMILY SSF52343 193 334 7.73E-32 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 304 312 8.6E-19 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 198 207 8.6E-19 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 154 161 8.6E-19 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 214 233 8.6E-19 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 137 149 8.6E-19 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2115 148bf440976053651fcca6d73104794e 340 Gene3D G3DSA:3.10.20.30 2 99 1.5E-20 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2115 148bf440976053651fcca6d73104794e 340 Pfam PF00970 Oxidoreductase FAD-binding domain 112 203 2.0E-15 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 Gene3D G3DSA:1.10.1670.10 24 225 5.8E-86 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 51 182 4.9E-21 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 ProSitePatterns PS01155 Endonuclease III family signature. 117 146 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 207 223 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 Pfam PF14815 NUDIX domain 250 360 1.5E-22 T 11-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 Gene3D G3DSA:1.10.340.30 36 147 5.8E-86 T 11-10-2018 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 Gene3D G3DSA:3.90.79.10 240 364 7.2E-14 T 11-10-2018 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 SMART SM00478 54 205 3.4E-47 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 SUPERFAMILY SSF55811 235 362 1.35E-23 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 21 279 5.6E-102 T 11-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 dqs_3964 f57df1c1ebf746522abc87d9627a1ed7 366 SUPERFAMILY SSF48150 19 239 3.45E-71 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 Pfam PF00672 HAMP domain 362 410 3.3E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 Gene3D G3DSA:1.10.287.130 434 519 3.0E-21 T 11-10-2018 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 SUPERFAMILY SSF103190 195 328 1.1E-14 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 SUPERFAMILY SSF158472 362 408 1.57E-7 T 11-10-2018 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 PRINTS PR00344 Bacterial sensor protein C-terminal signature 646 656 1.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 PRINTS PR00344 Bacterial sensor protein C-terminal signature 628 642 1.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 PRINTS PR00344 Bacterial sensor protein C-terminal signature 658 676 1.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 PRINTS PR00344 Bacterial sensor protein C-terminal signature 682 695 1.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 SMART SM00304 362 415 1.1E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 Pfam PF00512 His Kinase A (phospho-acceptor) domain 459 521 2.0E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 570 696 2.3E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 SUPERFAMILY SSF55874 515 694 5.89E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 Gene3D G3DSA:3.30.565.10 527 701 7.9E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 SMART SM00387 567 698 8.1E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 SMART SM00388 457 524 6.0E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 Pfam PF17202 Single cache domain 3 224 335 2.9E-29 T 11-10-2018 IPR033463 Single cache domain 3 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 Gene3D G3DSA:1.20.1480.50 330 419 5.5E-9 T 11-10-2018 dqs_0082 f371682ab6c8e2266366ad7d9586c05d 728 SUPERFAMILY SSF47384 452 521 2.94E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 1.2E-35 T 11-10-2018 IPR002220 DapA-like GO:0016829 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 1.2E-35 T 11-10-2018 IPR002220 DapA-like GO:0016829 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 1.2E-35 T 11-10-2018 IPR002220 DapA-like GO:0016829 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 1.2E-35 T 11-10-2018 IPR002220 DapA-like GO:0016829 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 SUPERFAMILY SSF51569 1 289 6.49E-106 T 11-10-2018 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 284 6.1E-110 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 287 67.117 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 Pfam PF00701 Dihydrodipicolinate synthetase family 2 286 3.8E-104 T 11-10-2018 IPR002220 DapA-like GO:0016829 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 SMART SM01130 1 289 1.1E-145 T 11-10-2018 IPR002220 DapA-like GO:0016829 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 PIRSF PIRSF001365 1 292 4.8E-93 T 11-10-2018 IPR002220 DapA-like GO:0016829 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_1206 fa1c207f04e4a4e5918e780ca0023e0b 292 Gene3D G3DSA:3.20.20.70 1 290 2.0E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 Gene3D G3DSA:3.40.1390.10 1 96 2.0E-27 T 11-10-2018 dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 1.4E-22 T 11-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 220 255 2.6E-7 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 142 176 1.4E-8 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 113 140 5.1E-5 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 223 251 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 Gene3D G3DSA:2.160.10.10 97 306 2.2E-64 T 11-10-2018 dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 6 327 5.2E-114 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 258 291 1.6E-6 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 SUPERFAMILY SSF51161 30 315 1.71E-79 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_2054 ea6bad4e96334a27ae54126e0090c4a9 341 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 3 324 37.498 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 dqs_0312 2ed444d737e158fec8b6ca2a5fa7fca7 554 Gene3D G3DSA:3.40.605.10 86 308 3.6E-31 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_0312 2ed444d737e158fec8b6ca2a5fa7fca7 554 Gene3D G3DSA:3.40.309.10 311 520 1.3E-20 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_0312 2ed444d737e158fec8b6ca2a5fa7fca7 554 SUPERFAMILY SSF53720 74 535 1.44E-63 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_0312 2ed444d737e158fec8b6ca2a5fa7fca7 554 Pfam PF00171 Aldehyde dehydrogenase family 91 500 6.4E-38 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_0312 2ed444d737e158fec8b6ca2a5fa7fca7 554 TIGRFAM TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN 3 553 2.6E-295 T 11-10-2018 IPR011975 Phenylacetic acid degradation protein PaaN2 dqs_2031 01f2ee2ffe0a467dceb9a864d2f266bf 296 SUPERFAMILY SSF51735 1 295 7.9E-101 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2031 01f2ee2ffe0a467dceb9a864d2f266bf 296 Pfam PF04321 RmlD substrate binding domain 1 294 6.2E-107 T 11-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 dqs_2031 01f2ee2ffe0a467dceb9a864d2f266bf 296 Gene3D G3DSA:3.40.50.720 3 282 4.2E-111 T 11-10-2018 dqs_2031 01f2ee2ffe0a467dceb9a864d2f266bf 296 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 294 2.2E-102 T 11-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 dqs_2031 01f2ee2ffe0a467dceb9a864d2f266bf 296 Gene3D G3DSA:3.90.25.10 163 289 4.2E-111 T 11-10-2018 dqs_2808 23418474322d6fd7945585f211c1daaa 481 Pfam PF01936 NYN domain 10 153 8.0E-34 T 11-10-2018 IPR021139 NYN domain, limkain-b1-type dqs_2808 23418474322d6fd7945585f211c1daaa 481 Gene3D G3DSA:3.40.50.1010 3 157 1.5E-36 T 11-10-2018 dqs_2564 f04c2625c1dfc53bd96eb46d1149cb1a 345 Gene3D G3DSA:2.60.120.10 10 345 6.4E-97 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_2564 f04c2625c1dfc53bd96eb46d1149cb1a 345 SUPERFAMILY SSF51182 7 343 1.57E-92 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2564 f04c2625c1dfc53bd96eb46d1149cb1a 345 Pfam PF07883 Cupin domain 96 164 5.8E-19 T 11-10-2018 IPR013096 Cupin 2, conserved barrel dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 SUPERFAMILY SSF109604 855 966 1.76E-8 T 11-10-2018 dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 Pfam PF13487 HD domain 854 919 1.3E-21 T 11-10-2018 dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 SMART SM00065 444 609 2.8E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 Gene3D G3DSA:3.30.450.20 156 230 3.2E-9 T 11-10-2018 dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 Gene3D G3DSA:1.10.3210.10 610 722 3.6E-18 T 11-10-2018 dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 Gene3D G3DSA:1.10.3210.10 835 978 1.1E-26 T 11-10-2018 dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 SUPERFAMILY SSF103190 184 239 3.45E-6 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 Gene3D G3DSA:3.30.450.40 402 609 1.8E-31 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 SMART SM00471 626 937 3.3E-5 T 11-10-2018 IPR003607 HD/PDEase domain dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 SUPERFAMILY SSF109604 622 731 1.48E-7 T 11-10-2018 dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 SUPERFAMILY SSF55781 427 613 1.92E-23 T 11-10-2018 dqs_0700 d185dd1952ea4dd90fcb610c74d8b044 999 Pfam PF01590 GAF domain 444 599 7.2E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2088 188dff94f7526cd185fc7df009929b09 269 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_2088 188dff94f7526cd185fc7df009929b09 269 Gene3D G3DSA:3.40.50.720 2 268 1.6E-78 T 11-10-2018 dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 1.6E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 1.6E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 1.6E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 229 249 6.6E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 6.6E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 6.6E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 6.6E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 6.6E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 6.6E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 Pfam PF00106 short chain dehydrogenase 19 203 4.7E-57 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2088 188dff94f7526cd185fc7df009929b09 269 SUPERFAMILY SSF51735 12 268 1.42E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2088 188dff94f7526cd185fc7df009929b09 269 PIRSF PIRSF000126 3 233 2.7E-50 T 11-10-2018 dqs_0898 ea3a31ea461ec87c162fb5de2981e950 500 Gene3D G3DSA:3.30.2350.10 318 500 3.0E-45 T 11-10-2018 dqs_0898 ea3a31ea461ec87c162fb5de2981e950 500 SUPERFAMILY SSF55174 262 346 1.3E-15 T 11-10-2018 dqs_0898 ea3a31ea461ec87c162fb5de2981e950 500 Gene3D G3DSA:3.10.290.10 259 313 9.6E-17 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_0898 ea3a31ea461ec87c162fb5de2981e950 500 Pfam PF01479 S4 domain 262 308 2.8E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0898 ea3a31ea461ec87c162fb5de2981e950 500 Pfam PF00849 RNA pseudouridylate synthase 324 464 2.9E-11 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_0898 ea3a31ea461ec87c162fb5de2981e950 500 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 355 495 2.6E-40 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 dqs_0898 ea3a31ea461ec87c162fb5de2981e950 500 SMART SM00363 262 319 4.8E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0898 ea3a31ea461ec87c162fb5de2981e950 500 SUPERFAMILY SSF55120 323 499 9.12E-39 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2006 aab682f7442f98e3c92c65f5698f96ca 265 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 101 258 3.0E-9 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 dqs_2006 aab682f7442f98e3c92c65f5698f96ca 265 Gene3D G3DSA:3.90.850.10 1 260 4.2E-80 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2006 aab682f7442f98e3c92c65f5698f96ca 265 SUPERFAMILY SSF56529 1 259 9.03E-77 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2006 aab682f7442f98e3c92c65f5698f96ca 265 TIGRFAM TIGR03220 catechol_dmpE: 2-oxopent-4-enoate hydratase 5 259 9.7E-136 T 11-10-2018 IPR017632 2-oxopent-4-enoate hydratase dqs_3534 a205727c8dae5ad3614e4ba8bb02dd42 37 Pfam PF00444 Ribosomal protein L36 1 37 1.2E-17 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3534 a205727c8dae5ad3614e4ba8bb02dd42 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 2.9E-21 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3534 a205727c8dae5ad3614e4ba8bb02dd42 37 SUPERFAMILY SSF57840 1 37 3.53E-16 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3534 a205727c8dae5ad3614e4ba8bb02dd42 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.316 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3534 a205727c8dae5ad3614e4ba8bb02dd42 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 21 37 0.005 T 11-10-2018 dqs_3534 a205727c8dae5ad3614e4ba8bb02dd42 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 Pfam PF00155 Aminotransferase class I and II 37 390 4.9E-62 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 Gene3D G3DSA:3.40.640.10 9 396 1.1E-120 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 240 253 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 234 258 1.8E-15 T 11-10-2018 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 98 118 1.8E-15 T 11-10-2018 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 203 226 1.8E-15 T 11-10-2018 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 120 141 1.8E-15 T 11-10-2018 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 167 191 1.8E-15 T 11-10-2018 dqs_0889 47315ca5afde3cd2f132f8622028226e 396 SUPERFAMILY SSF53383 8 395 6.45E-103 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 PRINTS PR00421 Thioredoxin family signature 67 75 4.2E-8 T 11-10-2018 dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 PRINTS PR00421 Thioredoxin family signature 75 84 4.2E-8 T 11-10-2018 dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 PRINTS PR00421 Thioredoxin family signature 115 126 4.2E-8 T 11-10-2018 dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 Pfam PF00085 Thioredoxin 51 148 2.5E-27 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 Gene3D G3DSA:3.40.30.10 46 151 7.5E-30 T 11-10-2018 dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 SUPERFAMILY SSF52833 33 152 2.0E-37 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 ProSitePatterns PS00194 Thioredoxin family active site. 68 86 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 TIGRFAM TIGR01068 thioredoxin: thioredoxin 54 148 2.8E-31 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 Gene3D G3DSA:2.20.28.140 9 44 1.6E-13 T 11-10-2018 dqs_0207 a83912c05c5c90a9ce487a13f2c37f11 153 PIRSF PIRSF000077 47 151 2.5E-30 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 dqs_1083 6dec4d0226c3481f3faa9c9ca90fe893 278 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 7 274 42.695 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 dqs_1083 6dec4d0226c3481f3faa9c9ca90fe893 278 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 14 274 5.3E-75 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 dqs_1083 6dec4d0226c3481f3faa9c9ca90fe893 278 SUPERFAMILY SSF53335 17 272 3.85E-56 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1083 6dec4d0226c3481f3faa9c9ca90fe893 278 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 22 270 1.3E-89 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 dqs_1083 6dec4d0226c3481f3faa9c9ca90fe893 278 Gene3D G3DSA:1.10.8.10 7 83 3.0E-20 T 11-10-2018 dqs_1083 6dec4d0226c3481f3faa9c9ca90fe893 278 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 dqs_1083 6dec4d0226c3481f3faa9c9ca90fe893 278 Pfam PF05175 Methyltransferase small domain 100 190 6.4E-17 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 dqs_1083 6dec4d0226c3481f3faa9c9ca90fe893 278 Gene3D G3DSA:3.40.50.150 84 275 1.5E-58 T 11-10-2018 dqs_1569 76d720b621e65bfac620a9b23411b213 576 Pfam PF00072 Response regulator receiver domain 20 126 6.8E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1569 76d720b621e65bfac620a9b23411b213 576 SUPERFAMILY SSF52172 16 150 1.37E-21 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1569 76d720b621e65bfac620a9b23411b213 576 SMART SM00267 142 313 1.5E-35 T 11-10-2018 IPR000160 GGDEF domain dqs_1569 76d720b621e65bfac620a9b23411b213 576 SMART SM00448 17 129 1.0E-4 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1569 76d720b621e65bfac620a9b23411b213 576 SUPERFAMILY SSF55073 158 314 1.88E-31 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1569 76d720b621e65bfac620a9b23411b213 576 Pfam PF00990 Diguanylate cyclase, GGDEF domain 154 308 1.2E-27 T 11-10-2018 IPR000160 GGDEF domain dqs_1569 76d720b621e65bfac620a9b23411b213 576 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 155 311 1.6E-19 T 11-10-2018 IPR000160 GGDEF domain dqs_1569 76d720b621e65bfac620a9b23411b213 576 SUPERFAMILY SSF141868 329 570 1.31E-92 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1569 76d720b621e65bfac620a9b23411b213 576 Gene3D G3DSA:3.20.20.450 327 573 5.6E-106 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1569 76d720b621e65bfac620a9b23411b213 576 Gene3D G3DSA:3.30.70.270 151 326 7.1E-35 T 11-10-2018 dqs_1569 76d720b621e65bfac620a9b23411b213 576 Gene3D G3DSA:3.40.50.2300 16 150 6.3E-18 T 11-10-2018 dqs_1569 76d720b621e65bfac620a9b23411b213 576 SMART SM00052 323 568 2.1E-123 T 11-10-2018 IPR001633 EAL domain dqs_1569 76d720b621e65bfac620a9b23411b213 576 Pfam PF00563 EAL domain 329 563 1.3E-76 T 11-10-2018 IPR001633 EAL domain dqs_1002 5002264d9390bdc2712032b2542f57f8 380 SUPERFAMILY SSF50998 26 371 1.3E-70 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily dqs_1002 5002264d9390bdc2712032b2542f57f8 380 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 7 377 6.6E-122 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB dqs_1002 5002264d9390bdc2712032b2542f57f8 380 Gene3D G3DSA:2.130.10.10 24 380 1.1E-81 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_1002 5002264d9390bdc2712032b2542f57f8 380 SMART SM00564 317 348 420.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_1002 5002264d9390bdc2712032b2542f57f8 380 SMART SM00564 186 218 63.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_1002 5002264d9390bdc2712032b2542f57f8 380 SMART SM00564 142 173 10.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_1002 5002264d9390bdc2712032b2542f57f8 380 SMART SM00564 64 93 35.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_1002 5002264d9390bdc2712032b2542f57f8 380 SMART SM00564 275 307 670.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_1002 5002264d9390bdc2712032b2542f57f8 380 SMART SM00564 101 133 18.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_1002 5002264d9390bdc2712032b2542f57f8 380 Pfam PF13360 PQQ-like domain 79 306 9.4E-52 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_1002 5002264d9390bdc2712032b2542f57f8 380 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 379 35.048 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB dqs_4123 3f908252858c2eced754712572abf0c0 490 PIRSF PIRSF006247 5 490 2.8E-159 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 dqs_4123 3f908252858c2eced754712572abf0c0 490 Pfam PF02386 Cation transport protein 43 482 8.5E-63 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 Gene3D G3DSA:2.40.30.10 198 362 4.0E-65 T 11-10-2018 dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 Pfam PF03486 HI0933-like protein 11 414 8.3E-101 T 11-10-2018 dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 Gene3D G3DSA:3.50.50.60 12 413 4.0E-65 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 Gene3D G3DSA:1.10.8.260 290 345 4.0E-65 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 PRINTS PR00419 Adrenodoxin reductase family signature 34 47 1.5E-7 T 11-10-2018 dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 PRINTS PR00419 Adrenodoxin reductase family signature 11 33 1.5E-7 T 11-10-2018 dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 PRINTS PR00419 Adrenodoxin reductase family signature 166 180 1.5E-7 T 11-10-2018 dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 13 413 1.2E-83 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 32 420 6.6E-158 T 11-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 SUPERFAMILY SSF160996 220 361 1.83E-8 T 11-10-2018 dqs_3923 6ca5961d545222a2055ae7fca2bf5d7f 427 SUPERFAMILY SSF51905 11 417 4.8E-43 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3086 55013cda4de56e763565ec6679ad04e8 226 SMART SM00862 145 220 3.7E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_3086 55013cda4de56e763565ec6679ad04e8 226 Gene3D G3DSA:1.10.10.10 122 225 4.3E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3086 55013cda4de56e763565ec6679ad04e8 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 5.9E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_3086 55013cda4de56e763565ec6679ad04e8 226 Gene3D G3DSA:3.40.50.2300 1 121 1.1E-39 T 11-10-2018 dqs_3086 55013cda4de56e763565ec6679ad04e8 226 Pfam PF00072 Response regulator receiver domain 3 113 3.3E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3086 55013cda4de56e763565ec6679ad04e8 226 SUPERFAMILY SSF52172 2 175 3.02E-41 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3086 55013cda4de56e763565ec6679ad04e8 226 SMART SM00448 1 112 4.2E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3086 55013cda4de56e763565ec6679ad04e8 226 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 220 6.9E-110 T 11-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 dqs_0776 bb8c063c7fcafd924ee3b0d9f6985c62 281 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 121 199 1.2E-7 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase dqs_0776 bb8c063c7fcafd924ee3b0d9f6985c62 281 SUPERFAMILY SSF53223 2 104 2.3E-27 T 11-10-2018 dqs_0776 bb8c063c7fcafd924ee3b0d9f6985c62 281 Gene3D G3DSA:3.40.50.10860 4 262 1.4E-75 T 11-10-2018 dqs_0776 bb8c063c7fcafd924ee3b0d9f6985c62 281 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 3.3E-22 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 dqs_0776 bb8c063c7fcafd924ee3b0d9f6985c62 281 SUPERFAMILY SSF51735 105 275 5.84E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0776 bb8c063c7fcafd924ee3b0d9f6985c62 281 Gene3D G3DSA:3.40.50.720 119 243 1.4E-75 T 11-10-2018 dqs_0776 bb8c063c7fcafd924ee3b0d9f6985c62 281 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 278 5.3E-73 T 11-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 dqs_0776 bb8c063c7fcafd924ee3b0d9f6985c62 281 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 277 30.542 T 11-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 dqs_1307 1e8e0800b253e5f6efcdde46f2e2cb22 266 Pfam PF12787 EcsC protein family 77 246 1.3E-26 T 11-10-2018 IPR024787 EcsC protein dqs_3452 c86c2ce82fa002d7e330b63210bff343 185 Pfam PF12915 Protein of unknown function (DUF3833) 21 182 1.4E-72 T 11-10-2018 IPR024409 Protein of unknown function DUF3833 dqs_1252 bcf24fdbe796c54023502422b7357304 425 Gene3D G3DSA:3.50.50.60 38 345 1.6E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1252 bcf24fdbe796c54023502422b7357304 425 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 358 424 2.8E-18 T 11-10-2018 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 dqs_1252 bcf24fdbe796c54023502422b7357304 425 SUPERFAMILY SSF55424 357 425 3.3E-14 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_1252 bcf24fdbe796c54023502422b7357304 425 SUPERFAMILY SSF51905 155 281 2.88E-33 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1252 bcf24fdbe796c54023502422b7357304 425 SUPERFAMILY SSF51905 37 353 3.51E-27 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1252 bcf24fdbe796c54023502422b7357304 425 Gene3D G3DSA:3.50.50.60 152 281 1.6E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1252 bcf24fdbe796c54023502422b7357304 425 Gene3D G3DSA:3.90.760.10 357 425 6.2E-5 T 11-10-2018 IPR037092 Flavocytochrome c sulphide dehydrogenase, flavin-binding domain superfamily GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 dqs_1252 bcf24fdbe796c54023502422b7357304 425 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 37 340 1.9E-12 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_1026 d81b8fe364da8aa89f00d4ca4eed04b9 301 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 264 293 3.0E-11 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 dqs_1026 d81b8fe364da8aa89f00d4ca4eed04b9 301 SUPERFAMILY SSF57783 261 297 1.7E-10 T 11-10-2018 dqs_1026 d81b8fe364da8aa89f00d4ca4eed04b9 301 Gene3D G3DSA:3.30.65.10 255 297 3.0E-7 T 11-10-2018 dqs_1026 d81b8fe364da8aa89f00d4ca4eed04b9 301 Pfam PF04471 Restriction endonuclease 126 240 2.2E-27 T 11-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 dqs_1026 d81b8fe364da8aa89f00d4ca4eed04b9 301 SUPERFAMILY SSF52980 131 241 3.22E-18 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 dqs_3713 477de7845be96e952b2e3b6bc63d783a 257 PIRSF PIRSF026326 3 245 4.3E-99 T 11-10-2018 IPR027023 Putative lipopolysaccharide kinase InaA dqs_3713 477de7845be96e952b2e3b6bc63d783a 257 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 24 227 1.9E-40 T 11-10-2018 dqs_1552 66a55122c83467a0deee87aeaf66c1dd 256 Gene3D G3DSA:3.60.15.10 11 240 9.6E-34 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1552 66a55122c83467a0deee87aeaf66c1dd 256 SMART SM00849 29 221 2.6E-14 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_1552 66a55122c83467a0deee87aeaf66c1dd 256 SUPERFAMILY SSF56281 25 239 2.75E-29 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1552 66a55122c83467a0deee87aeaf66c1dd 256 Pfam PF00753 Metallo-beta-lactamase superfamily 28 221 1.8E-18 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 560 569 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 373 386 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 Pfam PF02954 Bacterial regulatory protein, Fis family 632 671 1.7E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 Pfam PF00158 Sigma-54 interaction domain 353 516 3.5E-62 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 SMART SM00382 369 513 1.6E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 436 451 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 SUPERFAMILY SSF52540 359 589 1.68E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 Gene3D G3DSA:1.10.8.60 522 600 3.0E-14 T 11-10-2018 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 SUPERFAMILY SSF46689 560 672 6.97E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 Gene3D G3DSA:3.30.450.40 26 212 9.0E-55 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 Gene3D G3DSA:1.10.10.60 620 673 8.4E-16 T 11-10-2018 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 639 656 1.7E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 656 674 1.7E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 Pfam PF01590 GAF domain 75 210 8.3E-6 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_3072 c4242257dbe18111d2526dd9be2dd1a7 674 Gene3D G3DSA:3.40.50.300 344 521 2.3E-56 T 11-10-2018 dqs_0832 7c4e77b30c01d2a903ea00686f39d45e 193 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 14 190 1.7E-25 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 dqs_0832 7c4e77b30c01d2a903ea00686f39d45e 193 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 5 191 21.885 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 dqs_0832 7c4e77b30c01d2a903ea00686f39d45e 193 Gene3D G3DSA:2.50.20.10 25 191 6.3E-40 T 11-10-2018 dqs_0832 7c4e77b30c01d2a903ea00686f39d45e 193 Pfam PF03550 Outer membrane lipoprotein LolB 40 189 1.5E-41 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 dqs_0832 7c4e77b30c01d2a903ea00686f39d45e 193 SUPERFAMILY SSF89392 22 190 8.24E-39 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX dqs_3613 855bf29b3f3793316df9d8d254c83730 905 SUPERFAMILY SSF69279 233 410 3.4E-14 T 11-10-2018 dqs_3613 855bf29b3f3793316df9d8d254c83730 905 Gene3D G3DSA:3.55.50.10 117 229 8.1E-84 T 11-10-2018 dqs_3613 855bf29b3f3793316df9d8d254c83730 905 Pfam PF05954 Phage late control gene D protein (GPD) 48 379 3.4E-89 T 11-10-2018 dqs_3613 855bf29b3f3793316df9d8d254c83730 905 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 677 825 7.6E-47 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal dqs_3613 855bf29b3f3793316df9d8d254c83730 905 Gene3D G3DSA:2.40.50.230 408 514 2.2E-39 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily dqs_3613 855bf29b3f3793316df9d8d254c83730 905 Gene3D G3DSA:2.30.110.50 33 379 8.1E-84 T 11-10-2018 dqs_3613 855bf29b3f3793316df9d8d254c83730 905 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 538 645 1.9E-36 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain dqs_3613 855bf29b3f3793316df9d8d254c83730 905 SUPERFAMILY SSF69349 501 559 1.18E-6 T 11-10-2018 dqs_3613 855bf29b3f3793316df9d8d254c83730 905 SUPERFAMILY SSF69255 415 510 2.48E-28 T 11-10-2018 dqs_3613 855bf29b3f3793316df9d8d254c83730 905 SUPERFAMILY SSF69279 33 203 2.89E-49 T 11-10-2018 dqs_3613 855bf29b3f3793316df9d8d254c83730 905 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 33 562 1.5E-122 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset dqs_3613 855bf29b3f3793316df9d8d254c83730 905 Gene3D G3DSA:3.30.1920.30 262 331 8.1E-84 T 11-10-2018 dqs_3613 855bf29b3f3793316df9d8d254c83730 905 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 42 565 1.3E-100 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein dqs_3631 f48ad0f93fbad85f6bd5f9de2fe8c375 294 SUPERFAMILY SSF53927 41 290 2.23E-67 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 dqs_3631 f48ad0f93fbad85f6bd5f9de2fe8c375 294 PIRSF PIRSF015626 19 294 5.9E-74 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 dqs_3631 f48ad0f93fbad85f6bd5f9de2fe8c375 294 Pfam PF02634 FdhD/NarQ family 56 291 1.4E-75 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 dqs_3631 f48ad0f93fbad85f6bd5f9de2fe8c375 294 Gene3D G3DSA:3.10.20.10 57 139 1.3E-8 T 11-10-2018 dqs_3631 f48ad0f93fbad85f6bd5f9de2fe8c375 294 Gene3D G3DSA:3.40.140.10 146 294 1.9E-38 T 11-10-2018 dqs_3631 f48ad0f93fbad85f6bd5f9de2fe8c375 294 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 34 293 26.996 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 dqs_1815 b3db907f409b07d93749eb63a759632e 320 Hamap MF_00625 Selenide, water dikinase [selD]. 1 320 37.334 T 11-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 dqs_1815 b3db907f409b07d93749eb63a759632e 320 Gene3D G3DSA:3.90.650.10 136 317 5.1E-51 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_1815 b3db907f409b07d93749eb63a759632e 320 SUPERFAMILY SSF56042 136 314 2.09E-48 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_1815 b3db907f409b07d93749eb63a759632e 320 Pfam PF02769 AIR synthase related protein, C-terminal domain 141 313 2.9E-29 T 11-10-2018 IPR010918 PurM-like, C-terminal domain dqs_1815 b3db907f409b07d93749eb63a759632e 320 SUPERFAMILY SSF55326 9 132 3.79E-35 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_1815 b3db907f409b07d93749eb63a759632e 320 TIGRFAM TIGR00476 selD: selenide, water dikinase 10 288 1.2E-118 T 11-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 dqs_1815 b3db907f409b07d93749eb63a759632e 320 PIRSF PIRSF036407 1 319 1.5E-106 T 11-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 dqs_1815 b3db907f409b07d93749eb63a759632e 320 Pfam PF00586 AIR synthase related protein, N-terminal domain 22 129 1.6E-20 T 11-10-2018 IPR016188 PurM-like, N-terminal domain dqs_1815 b3db907f409b07d93749eb63a759632e 320 Gene3D G3DSA:3.30.1330.10 8 135 2.0E-40 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_2469 b11763d6665ba1ab6ec467a9a5fe7463 154 Gene3D G3DSA:1.20.120.10 23 153 6.4E-32 T 11-10-2018 dqs_2469 b11763d6665ba1ab6ec467a9a5fe7463 154 SUPERFAMILY SSF47175 25 153 3.53E-34 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 dqs_2469 b11763d6665ba1ab6ec467a9a5fe7463 154 PIRSF PIRSF000027 8 153 2.2E-32 T 11-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 dqs_2469 b11763d6665ba1ab6ec467a9a5fe7463 154 PRINTS PR00608 Class II cytochrome C signature 117 140 6.2E-10 T 11-10-2018 IPR015984 Cytochrome c prime, subgroup dqs_2469 b11763d6665ba1ab6ec467a9a5fe7463 154 PRINTS PR00608 Class II cytochrome C signature 140 151 6.2E-10 T 11-10-2018 IPR015984 Cytochrome c prime, subgroup dqs_2469 b11763d6665ba1ab6ec467a9a5fe7463 154 Pfam PF01322 Cytochrome C' 30 151 5.4E-30 T 11-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 dqs_3540 e6234ea03850b7a1978d2442eeb7df11 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 1.4E-39 T 11-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3540 e6234ea03850b7a1978d2442eeb7df11 117 Gene3D G3DSA:3.30.420.100 1 117 7.1E-43 T 11-10-2018 dqs_3540 e6234ea03850b7a1978d2442eeb7df11 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 4.6E-38 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3540 e6234ea03850b7a1978d2442eeb7df11 117 SUPERFAMILY SSF53137 3 115 2.07E-51 T 11-10-2018 dqs_3540 e6234ea03850b7a1978d2442eeb7df11 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.354 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_0302 fba678db31145af908e62f790ef9072a 307 SUPERFAMILY SSF52540 2 228 7.5E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0302 fba678db31145af908e62f790ef9072a 307 Pfam PF00005 ABC transporter 19 162 3.6E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0302 fba678db31145af908e62f790ef9072a 307 SMART SM00382 28 210 1.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0302 fba678db31145af908e62f790ef9072a 307 Gene3D G3DSA:3.40.50.300 1 249 2.8E-68 T 11-10-2018 dqs_3886 54b02c6de1f56e50d2f2f6e4aee5ed7e 398 Gene3D G3DSA:1.20.1720.10 8 388 3.8E-100 T 11-10-2018 dqs_3886 54b02c6de1f56e50d2f2f6e4aee5ed7e 398 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 8 371 2.2E-66 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 dqs_3886 54b02c6de1f56e50d2f2f6e4aee5ed7e 398 SUPERFAMILY SSF103473 6 389 4.84E-62 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_3886 54b02c6de1f56e50d2f2f6e4aee5ed7e 398 Pfam PF07690 Major Facilitator Superfamily 14 346 9.4E-45 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 SUPERFAMILY SSF55073 264 414 5.57E-43 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 Pfam PF13426 PAS domain 29 125 7.4E-21 T 11-10-2018 IPR000014 PAS domain dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 Gene3D G3DSA:3.30.450.20 2 134 9.6E-42 T 11-10-2018 dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 131 255 2.1E-24 T 11-10-2018 IPR000014 PAS domain dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 4 132 1.1E-19 T 11-10-2018 IPR000014 PAS domain dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 Pfam PF00990 Diguanylate cyclase, GGDEF domain 259 412 6.0E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 SUPERFAMILY SSF55785 18 125 1.24E-27 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 255 415 2.8E-47 T 11-10-2018 IPR000160 GGDEF domain dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 Gene3D G3DSA:3.30.70.270 258 418 4.6E-52 T 11-10-2018 dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 SUPERFAMILY SSF55785 145 257 3.01E-29 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 SMART SM00086 206 248 1.6E-6 T 11-10-2018 IPR001610 PAC motif dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 SMART SM00086 84 126 8.1E-6 T 11-10-2018 IPR001610 PAC motif dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 SMART SM00267 248 416 1.2E-58 T 11-10-2018 IPR000160 GGDEF domain dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 Pfam PF00989 PAS fold 137 244 1.5E-17 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 Gene3D G3DSA:3.30.450.20 135 257 2.1E-38 T 11-10-2018 dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 SMART SM00091 7 78 2.5E-6 T 11-10-2018 IPR000014 PAS domain dqs_0349 1f57f2570a516acb3bf0798816b3238a 420 SMART SM00091 134 200 6.7E-10 T 11-10-2018 IPR000014 PAS domain dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 SUPERFAMILY SSF50249 4 58 1.03E-12 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 9 425 6.8E-88 T 11-10-2018 dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 Pfam PF01938 TRAM domain 6 51 2.4E-9 T 11-10-2018 IPR002792 TRAM domain dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 3 433 70.063 T 11-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 258 432 1.5E-16 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 362 393 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 Gene3D G3DSA:3.40.1350.30 120 262 1.9E-102 T 11-10-2018 dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 Gene3D G3DSA:3.40.50.150 73 427 1.9E-102 T 11-10-2018 dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 SUPERFAMILY SSF53335 61 432 9.95E-77 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1210 1ceb1b94356af547f0f9e7c040cee295 433 Gene3D G3DSA:2.40.50.140 2 72 1.7E-24 T 11-10-2018 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 Gene3D G3DSA:3.30.420.40 200 394 5.1E-70 T 11-10-2018 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 TIGRFAM TIGR00016 ackA: acetate kinase 2 390 2.8E-109 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 PRINTS PR00471 Acetate kinase family signature 206 227 5.0E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 PRINTS PR00471 Acetate kinase family signature 300 313 5.0E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 PRINTS PR00471 Acetate kinase family signature 177 190 5.0E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 PRINTS PR00471 Acetate kinase family signature 4 15 5.0E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 PRINTS PR00471 Acetate kinase family signature 374 386 5.0E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 PRINTS PR00471 Acetate kinase family signature 322 338 5.0E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 SUPERFAMILY SSF53067 1 199 1.42E-56 T 11-10-2018 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 Gene3D G3DSA:3.30.420.40 1 198 1.1E-59 T 11-10-2018 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 Hamap MF_00020 Acetate kinase [ackA]. 1 395 155.966 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 PIRSF PIRSF000722 1 394 5.4E-135 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 SUPERFAMILY SSF53067 162 393 1.69E-76 T 11-10-2018 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 Pfam PF00871 Acetokinase family 4 387 1.4E-106 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_3784 45acd644f1654a536e1cedc9161a6db4 395 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 dqs_0778 95aea8a353b63c4d4c2f23f59ba6b899 633 SMART SM00955 235 514 1.6E-64 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 dqs_0778 95aea8a353b63c4d4c2f23f59ba6b899 633 Pfam PF00773 RNB domain 242 468 2.6E-35 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 dqs_0778 95aea8a353b63c4d4c2f23f59ba6b899 633 Pfam PF00773 RNB domain 474 513 2.3E-7 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 dqs_0778 95aea8a353b63c4d4c2f23f59ba6b899 633 SUPERFAMILY SSF50249 206 559 5.71E-78 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_0779 11ae35ba34406bf96fa7cc0003ea821a 281 Pfam PF08241 Methyltransferase domain 54 150 3.7E-17 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_0779 11ae35ba34406bf96fa7cc0003ea821a 281 SUPERFAMILY SSF53335 19 258 5.27E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0779 11ae35ba34406bf96fa7cc0003ea821a 281 Gene3D G3DSA:3.40.50.150 35 280 6.5E-39 T 11-10-2018 dqs_1310 1d4d2db93307fae9226a6a66a047f0da 392 Pfam PF00202 Aminotransferase class-III 20 389 2.9E-103 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_1310 1d4d2db93307fae9226a6a66a047f0da 392 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 216 253 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_1310 1d4d2db93307fae9226a6a66a047f0da 392 SUPERFAMILY SSF53383 12 391 6.12E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1310 1d4d2db93307fae9226a6a66a047f0da 392 Gene3D G3DSA:3.40.640.10 54 297 4.8E-131 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_1310 1d4d2db93307fae9226a6a66a047f0da 392 PIRSF PIRSF000521 162 392 3.0E-35 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_1310 1d4d2db93307fae9226a6a66a047f0da 392 PIRSF PIRSF000521 17 171 3.8E-10 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_1310 1d4d2db93307fae9226a6a66a047f0da 392 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 10 391 64.935 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 dqs_1310 1d4d2db93307fae9226a6a66a047f0da 392 Gene3D G3DSA:3.90.1150.10 20 385 4.8E-131 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3701 d9e92343e4d1fac650e88e22cca95f33 353 Pfam PF01435 Peptidase family M48 163 350 4.9E-28 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 dqs_2848 b745d42de118229c49f82bbee6ff8fc7 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 83 96 1.1E-12 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 dqs_2848 b745d42de118229c49f82bbee6ff8fc7 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 62 78 1.1E-12 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 dqs_2848 b745d42de118229c49f82bbee6ff8fc7 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 27 43 1.1E-12 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 dqs_2848 b745d42de118229c49f82bbee6ff8fc7 98 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 9 97 6.5E-24 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 dqs_2848 b745d42de118229c49f82bbee6ff8fc7 98 Pfam PF02049 Flagellar hook-basal body complex protein FliE 10 98 1.6E-30 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 dqs_2848 b745d42de118229c49f82bbee6ff8fc7 98 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 98 17.706 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 283 294 3.5E-8 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 124 143 3.5E-8 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 168 184 3.5E-8 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 147 161 3.5E-8 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 232 246 3.5E-8 T 11-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 88 286 2.2E-27 T 11-10-2018 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 SUPERFAMILY SSF55869 24 85 5.49E-16 T 11-10-2018 IPR035447 DNA topoisomerase I, N-terminal dqs_1944 9a925c55ba88ad6041cb33294d032165 365 Gene3D G3DSA:1.10.132.120 92 324 5.4E-87 T 11-10-2018 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 Gene3D G3DSA:3.30.66.10 3 91 2.7E-29 T 11-10-2018 IPR035447 DNA topoisomerase I, N-terminal dqs_1944 9a925c55ba88ad6041cb33294d032165 365 SUPERFAMILY SSF56349 80 302 3.83E-64 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 dqs_1944 9a925c55ba88ad6041cb33294d032165 365 Gene3D G3DSA:3.90.15.10 115 233 5.4E-87 T 11-10-2018 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 dqs_1771 b92a7e4242e62f5f5b14fd2c791b1d1b 125 SUPERFAMILY SSF56214 1 123 1.26E-29 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 dqs_1771 b92a7e4242e62f5f5b14fd2c791b1d1b 125 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 119 1.5E-21 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 dqs_1771 b92a7e4242e62f5f5b14fd2c791b1d1b 125 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 86 3.0E-29 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 dqs_1771 b92a7e4242e62f5f5b14fd2c791b1d1b 125 Gene3D G3DSA:3.90.470.20 1 124 3.8E-35 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 dqs_1771 b92a7e4242e62f5f5b14fd2c791b1d1b 125 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 124 6.0E-32 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 dqs_1771 b92a7e4242e62f5f5b14fd2c791b1d1b 125 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 124 23.419 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 dqs_1771 b92a7e4242e62f5f5b14fd2c791b1d1b 125 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 124 2.1E-24 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 SUPERFAMILY SSF51735 109 296 3.01E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 327 2.5E-34 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 Gene3D G3DSA:3.30.70.260 329 409 1.0E-28 T 11-10-2018 dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 230 246 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 120 295 1.3E-49 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 SUPERFAMILY SSF55021 335 409 7.91E-16 T 11-10-2018 dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 SUPERFAMILY SSF52283 9 134 9.99E-44 T 11-10-2018 dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 Gene3D G3DSA:3.40.50.720 110 298 3.9E-101 T 11-10-2018 dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 155 182 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 dqs_3230 e4bd805801e6bd0a1a105cd88eefc254 410 Gene3D G3DSA:3.40.50.720 17 313 3.9E-101 T 11-10-2018 dqs_2974 1298bd7524f8921752c6a5f2cab58368 289 PRINTS PR00478 Phosphoribulokinase family signature 181 204 1.4E-30 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 dqs_2974 1298bd7524f8921752c6a5f2cab58368 289 PRINTS PR00478 Phosphoribulokinase family signature 125 143 1.4E-30 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 dqs_2974 1298bd7524f8921752c6a5f2cab58368 289 PRINTS PR00478 Phosphoribulokinase family signature 10 27 1.4E-30 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 dqs_2974 1298bd7524f8921752c6a5f2cab58368 289 PRINTS PR00478 Phosphoribulokinase family signature 163 180 1.4E-30 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 dqs_2974 1298bd7524f8921752c6a5f2cab58368 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 5 213 3.3E-73 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 dqs_2974 1298bd7524f8921752c6a5f2cab58368 289 SUPERFAMILY SSF52540 2 285 5.99E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2974 1298bd7524f8921752c6a5f2cab58368 289 Gene3D G3DSA:3.40.50.300 1 288 2.4E-117 T 11-10-2018 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 120 2.6E-51 T 11-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 ProSitePatterns PS01120 Urease nickel ligands signature. 128 141 - T 11-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 Hamap MF_01953 Urease subunit alpha [ureC]. 2 568 57.261 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 568 3.4E-293 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 SUPERFAMILY SSF51338 424 479 1.94E-6 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 SUPERFAMILY SSF51338 1 178 2.4E-61 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 Gene3D G3DSA:2.30.40.10 4 482 6.5E-297 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 ProSitePatterns PS00145 Urease active site. 318 334 - T 11-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 2.8E-35 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 296 313 2.8E-35 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 335 351 2.8E-35 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 2.8E-35 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 Pfam PF01979 Amidohydrolase family 126 456 7.6E-81 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 Gene3D G3DSA:3.20.20.140 130 568 6.5E-297 T 11-10-2018 dqs_3647 0a87016dee21aaf05d88970467ff169d 568 SUPERFAMILY SSF51556 130 568 7.38E-201 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_3612 ce6233599d8c6379a9b853e0b1ee1b2d 377 Gene3D G3DSA:3.40.50.300 108 362 1.9E-87 T 11-10-2018 dqs_3612 ce6233599d8c6379a9b853e0b1ee1b2d 377 Gene3D G3DSA:3.30.450.90 2 107 1.9E-29 T 11-10-2018 dqs_3612 ce6233599d8c6379a9b853e0b1ee1b2d 377 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 10 350 8.3E-136 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 dqs_3612 ce6233599d8c6379a9b853e0b1ee1b2d 377 SUPERFAMILY SSF52540 7 344 1.93E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3612 ce6233599d8c6379a9b853e0b1ee1b2d 377 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 200 214 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_3612 ce6233599d8c6379a9b853e0b1ee1b2d 377 Pfam PF00437 Type II/IV secretion system protein 41 253 1.9E-37 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_1954 8e4dc30b57099e8ae8c4b750fbd606a0 578 Gene3D G3DSA:3.30.420.40 1 96 3.2E-32 T 11-10-2018 dqs_1954 8e4dc30b57099e8ae8c4b750fbd606a0 578 Gene3D G3DSA:3.30.420.350 150 346 2.2E-64 T 11-10-2018 dqs_1954 8e4dc30b57099e8ae8c4b750fbd606a0 578 Pfam PF02543 Carbamoyltransferase N-terminus 4 353 2.1E-68 T 11-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 dqs_1954 8e4dc30b57099e8ae8c4b750fbd606a0 578 Gene3D G3DSA:3.90.870.20 369 575 5.8E-83 T 11-10-2018 IPR038152 Carbamoyltransferase, C-terminal domain superfamily dqs_1954 8e4dc30b57099e8ae8c4b750fbd606a0 578 SUPERFAMILY SSF53067 1 356 2.16E-21 T 11-10-2018 dqs_1954 8e4dc30b57099e8ae8c4b750fbd606a0 578 Pfam PF16861 Carbamoyltransferase C-terminus 404 576 1.2E-69 T 11-10-2018 IPR031730 Carbamoyltransferase, C-terminal dqs_1640 dfa8e631fba81b4e6029af300c0ce157 417 Gene3D G3DSA:3.30.2010.10 206 288 6.1E-31 T 11-10-2018 dqs_1640 dfa8e631fba81b4e6029af300c0ce157 417 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 28 206 1.4E-55 T 11-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 dqs_1640 dfa8e631fba81b4e6029af300c0ce157 417 Pfam PF01435 Peptidase family M48 211 413 1.8E-37 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 SUPERFAMILY SSF47240 1 155 3.54E-41 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 PIRSF PIRSF002560 1 157 2.8E-57 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 PRINTS PR00601 Bacterioferritin signature 23 43 3.4E-39 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 PRINTS PR00601 Bacterioferritin signature 106 126 3.4E-39 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 PRINTS PR00601 Bacterioferritin signature 128 149 3.4E-39 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 PRINTS PR00601 Bacterioferritin signature 85 105 3.4E-39 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 PRINTS PR00601 Bacterioferritin signature 3 22 3.4E-39 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 PRINTS PR00601 Bacterioferritin signature 44 64 3.4E-39 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 Gene3D G3DSA:1.20.1260.10 1 154 1.2E-57 T 11-10-2018 IPR012347 Ferritin-like dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 7.1E-47 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 dqs_0261 7a91eb947d716adc26425a91368a8d1a 161 Pfam PF00210 Ferritin-like domain 8 143 1.5E-32 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 dqs_1233 6207ee21910d09589888464b4cf371f0 178 Gene3D G3DSA:3.10.450.50 10 178 3.8E-45 T 11-10-2018 dqs_1233 6207ee21910d09589888464b4cf371f0 178 SUPERFAMILY SSF54427 5 178 2.77E-44 T 11-10-2018 IPR032710 NTF2-like domain superfamily dqs_1233 6207ee21910d09589888464b4cf371f0 178 Pfam PF00866 Ring hydroxylating beta subunit 34 166 1.5E-33 T 11-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 dqs_3861 b49d2b2f64e9df86370e60a5a7435b22 149 SUPERFAMILY SSF55729 4 142 2.61E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3861 b49d2b2f64e9df86370e60a5a7435b22 149 Pfam PF13302 Acetyltransferase (GNAT) domain 1 117 3.7E-22 T 11-10-2018 IPR000182 GNAT domain dqs_3861 b49d2b2f64e9df86370e60a5a7435b22 149 Gene3D G3DSA:3.40.630.30 1 128 2.4E-28 T 11-10-2018 dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 6.1E-27 T 11-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 32.064 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 SUPERFAMILY SSF54747 3 73 3.27E-30 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.6E-29 T 11-10-2018 IPR020784 Ribosomal protein L11, N-terminal dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 4.8E-66 T 11-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 Gene3D G3DSA:1.10.10.2720 73 143 1.3E-29 T 11-10-2018 dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 SUPERFAMILY SSF46906 68 141 2.75E-28 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 Gene3D G3DSA:3.30.1550.10 2 72 2.1E-34 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 4.0E-16 T 11-10-2018 dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 SMART SM00649 9 141 3.5E-86 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 dqs_3567 9c9e7b7157507d9042a89440c3c3a514 143 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 11-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 Pfam PF00216 Bacterial DNA-binding protein 1 90 8.9E-30 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 SMART SM00411 1 91 1.2E-41 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.445 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 2.3E-41 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 SUPERFAMILY SSF47729 1 91 4.27E-30 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 Gene3D G3DSA:4.10.520.10 1 93 9.0E-33 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 2.3E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 2.3E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1181 5863dce2c95caa745265a717f76f03d2 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 2.3E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_3956 f74af9faad4d5769e0ec8c93b565f290 350 Gene3D G3DSA:3.90.650.10 169 350 1.5E-54 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_3956 f74af9faad4d5769e0ec8c93b565f290 350 SUPERFAMILY SSF56042 171 345 1.64E-48 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_3956 f74af9faad4d5769e0ec8c93b565f290 350 Gene3D G3DSA:3.30.1330.10 17 164 1.3E-51 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_3956 f74af9faad4d5769e0ec8c93b565f290 350 Pfam PF02769 AIR synthase related protein, C-terminal domain 174 327 4.7E-29 T 11-10-2018 IPR010918 PurM-like, C-terminal domain dqs_3956 f74af9faad4d5769e0ec8c93b565f290 350 PIRSF PIRSF005644 11 350 3.0E-124 T 11-10-2018 IPR011854 Carbamoyl dehydratase HypE dqs_3956 f74af9faad4d5769e0ec8c93b565f290 350 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 15 350 2.2E-134 T 11-10-2018 IPR011854 Carbamoyl dehydratase HypE dqs_3956 f74af9faad4d5769e0ec8c93b565f290 350 Pfam PF00586 AIR synthase related protein, N-terminal domain 48 161 5.1E-18 T 11-10-2018 IPR016188 PurM-like, N-terminal domain dqs_3956 f74af9faad4d5769e0ec8c93b565f290 350 SUPERFAMILY SSF55326 18 165 6.93E-36 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 Gene3D G3DSA:3.90.650.10 159 336 4.2E-50 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 PIRSF PIRSF005303 15 335 3.8E-83 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 Pfam PF02769 AIR synthase related protein, C-terminal domain 165 313 2.6E-7 T 11-10-2018 IPR010918 PurM-like, C-terminal domain dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 Pfam PF00586 AIR synthase related protein, N-terminal domain 43 152 1.3E-24 T 11-10-2018 IPR016188 PurM-like, N-terminal domain dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 SUPERFAMILY SSF55326 21 152 6.11E-34 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 20 335 27.095 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 SUPERFAMILY SSF56042 157 319 1.36E-33 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 Gene3D G3DSA:3.30.1330.10 18 158 2.3E-47 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily dqs_0520 b8eaa3012e9e5fac90d9ef4c6af870df 336 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 21 335 3.0E-98 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 dqs_3496 f9231ed468473795375d293743bf256b 517 Gene3D G3DSA:3.30.565.10 369 515 2.2E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3496 f9231ed468473795375d293743bf256b 517 SMART SM00388 304 369 7.0E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3496 f9231ed468473795375d293743bf256b 517 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 477 4.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3496 f9231ed468473795375d293743bf256b 517 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 496 4.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3496 f9231ed468473795375d293743bf256b 517 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 463 4.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3496 f9231ed468473795375d293743bf256b 517 Gene3D G3DSA:3.30.450.20 178 267 3.2E-6 T 11-10-2018 dqs_3496 f9231ed468473795375d293743bf256b 517 SUPERFAMILY SSF55874 372 512 4.45E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3496 f9231ed468473795375d293743bf256b 517 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 411 509 1.5E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3496 f9231ed468473795375d293743bf256b 517 SUPERFAMILY SSF47384 296 367 8.83E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3496 f9231ed468473795375d293743bf256b 517 Pfam PF00512 His Kinase A (phospho-acceptor) domain 304 368 7.7E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3496 f9231ed468473795375d293743bf256b 517 Gene3D G3DSA:1.10.287.130 291 368 1.0E-15 T 11-10-2018 dqs_3496 f9231ed468473795375d293743bf256b 517 SUPERFAMILY SSF55785 186 245 2.28E-6 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3496 f9231ed468473795375d293743bf256b 517 SMART SM00387 410 517 2.1E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3496 f9231ed468473795375d293743bf256b 517 Pfam PF13188 PAS domain 197 240 0.002 T 11-10-2018 IPR000014 PAS domain dqs_2011 14e7508210e33a4c2d70e4729e1b3dfe 310 SUPERFAMILY SSF54593 5 273 3.57E-35 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2011 14e7508210e33a4c2d70e4729e1b3dfe 310 Gene3D G3DSA:3.10.180.10 151 309 3.6E-33 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2011 14e7508210e33a4c2d70e4729e1b3dfe 310 Gene3D G3DSA:3.10.180.10 2 134 2.7E-32 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2011 14e7508210e33a4c2d70e4729e1b3dfe 310 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 119 2.2E-4 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_2011 14e7508210e33a4c2d70e4729e1b3dfe 310 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 152 269 1.2E-12 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_2011 14e7508210e33a4c2d70e4729e1b3dfe 310 TIGRFAM TIGR03211 catechol_2_3: catechol 2,3 dioxygenase 6 310 9.2E-110 T 11-10-2018 IPR017624 Catechol 2,3 dioxygenase GO:0008198|GO:0018577|GO:0019439|GO:0055114 KEGG: 00361+1.13.11.2|KEGG: 00362+1.13.11.2|KEGG: 00622+1.13.11.2|KEGG: 00643+1.13.11.2|MetaCyc: PWY-5419|MetaCyc: PWY-5641 dqs_2011 14e7508210e33a4c2d70e4729e1b3dfe 310 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 247 268 - T 11-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 dqs_4032 e95ef709459b4919631ed8a7b1c7dde7 671 Gene3D G3DSA:1.10.510.10 142 312 2.6E-55 T 11-10-2018 dqs_4032 e95ef709459b4919631ed8a7b1c7dde7 671 SUPERFAMILY SSF56112 37 310 6.07E-54 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_4032 e95ef709459b4919631ed8a7b1c7dde7 671 SMART SM00219 41 312 1.1E-6 T 11-10-2018 IPR020635 Tyrosine-protein kinase, catalytic domain GO:0004713|GO:0006468 dqs_4032 e95ef709459b4919631ed8a7b1c7dde7 671 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 178 190 - T 11-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 dqs_4032 e95ef709459b4919631ed8a7b1c7dde7 671 Pfam PF00069 Protein kinase domain 42 261 1.4E-29 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_4032 e95ef709459b4919631ed8a7b1c7dde7 671 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 47 70 - T 11-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 dqs_4032 e95ef709459b4919631ed8a7b1c7dde7 671 Pfam PF14326 Domain of unknown function (DUF4384) 452 529 4.5E-12 T 11-10-2018 IPR025493 Domain of unknown function DUF4384 dqs_4032 e95ef709459b4919631ed8a7b1c7dde7 671 Gene3D G3DSA:3.30.200.20 25 141 2.6E-55 T 11-10-2018 dqs_0019 2183ffcdddf61273bed5364c9fc2c237 553 SUPERFAMILY SSF52540 260 507 4.11E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0019 2183ffcdddf61273bed5364c9fc2c237 553 Gene3D G3DSA:3.40.50.300 254 431 1.7E-12 T 11-10-2018 dqs_1561 3cafca051a31cb9aa34736560df62415 224 SMART SM00900 107 204 8.9E-25 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 dqs_1561 3cafca051a31cb9aa34736560df62415 224 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 9 206 22.629 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 dqs_1561 3cafca051a31cb9aa34736560df62415 224 PIRSF PIRSF006091 3 217 5.9E-63 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 dqs_1561 3cafca051a31cb9aa34736560df62415 224 Pfam PF04205 FMN-binding domain 107 201 2.4E-13 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 dqs_1561 3cafca051a31cb9aa34736560df62415 224 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 18 205 3.1E-46 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 dqs_1106 f8e6e2c2dbaec27b9544ea6291256d11 459 PIRSF PIRSF000204 2 456 6.2E-154 T 11-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 dqs_1106 f8e6e2c2dbaec27b9544ea6291256d11 459 SUPERFAMILY SSF52467 282 455 7.85E-68 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_1106 f8e6e2c2dbaec27b9544ea6291256d11 459 Gene3D G3DSA:3.40.50.1220 274 457 3.0E-78 T 11-10-2018 dqs_1106 f8e6e2c2dbaec27b9544ea6291256d11 459 Pfam PF02233 NAD(P) transhydrogenase beta subunit 8 452 9.6E-169 T 11-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 dqs_3369 14c7920eaded8422d287829107459b2a 452 Pfam PF02978 Signal peptide binding domain 329 428 1.8E-30 T 11-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 dqs_3369 14c7920eaded8422d287829107459b2a 452 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 440 32.925 T 11-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 dqs_3369 14c7920eaded8422d287829107459b2a 452 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_3369 14c7920eaded8422d287829107459b2a 452 Gene3D G3DSA:1.20.120.140 4 305 1.9E-121 T 11-10-2018 dqs_3369 14c7920eaded8422d287829107459b2a 452 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 6.4E-73 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_3369 14c7920eaded8422d287829107459b2a 452 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 430 2.9E-173 T 11-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 dqs_3369 14c7920eaded8422d287829107459b2a 452 Gene3D G3DSA:1.10.260.30 328 450 1.5E-41 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 dqs_3369 14c7920eaded8422d287829107459b2a 452 SUPERFAMILY SSF52540 42 358 6.73E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3369 14c7920eaded8422d287829107459b2a 452 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 2.6E-20 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_3369 14c7920eaded8422d287829107459b2a 452 SMART SM00382 99 270 2.5E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3369 14c7920eaded8422d287829107459b2a 452 SMART SM00963 1 86 3.0E-34 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_3369 14c7920eaded8422d287829107459b2a 452 Gene3D G3DSA:3.40.50.300 90 285 1.9E-121 T 11-10-2018 dqs_3369 14c7920eaded8422d287829107459b2a 452 SMART SM00962 100 296 4.3E-115 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_3369 14c7920eaded8422d287829107459b2a 452 SUPERFAMILY SSF47446 329 431 3.76E-33 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 dqs_0101 092717a8cfdb04df3483efa8fb9c38db 541 SMART SM00304 210 264 3.9E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0101 092717a8cfdb04df3483efa8fb9c38db 541 SMART SM00304 306 366 17.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0101 092717a8cfdb04df3483efa8fb9c38db 541 SMART SM00283 279 540 1.1E-53 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0101 092717a8cfdb04df3483efa8fb9c38db 541 SUPERFAMILY SSF58104 232 541 2.35E-61 T 11-10-2018 dqs_0101 092717a8cfdb04df3483efa8fb9c38db 541 Gene3D G3DSA:1.10.287.950 210 541 2.0E-65 T 11-10-2018 dqs_0101 092717a8cfdb04df3483efa8fb9c38db 541 Pfam PF00672 HAMP domain 210 259 6.8E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0101 092717a8cfdb04df3483efa8fb9c38db 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 354 506 7.2E-35 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_2615 53e9e42c6d761630b68935a12438d7e4 320 SUPERFAMILY SSF48179 191 312 1.36E-32 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_2615 53e9e42c6d761630b68935a12438d7e4 320 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 14 313 1.2E-75 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 dqs_2615 53e9e42c6d761630b68935a12438d7e4 320 Gene3D G3DSA:1.10.1040.10 188 319 5.0E-36 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_2615 53e9e42c6d761630b68935a12438d7e4 320 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 190 312 1.0E-32 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain dqs_2615 53e9e42c6d761630b68935a12438d7e4 320 Pfam PF02558 Ketopantoate reductase PanE/ApbA 15 161 2.1E-35 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain dqs_2615 53e9e42c6d761630b68935a12438d7e4 320 Gene3D G3DSA:3.40.50.720 10 186 3.8E-50 T 11-10-2018 dqs_2615 53e9e42c6d761630b68935a12438d7e4 320 SUPERFAMILY SSF51735 13 132 6.38E-15 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1127 19da11273f181337f9eb1a939687e8a7 443 Gene3D G3DSA:3.40.50.12160 11 129 7.6E-26 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily dqs_1127 19da11273f181337f9eb1a939687e8a7 443 SMART SM00729 141 366 3.9E-58 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 SUPERFAMILY SSF102114 119 373 4.71E-55 T 11-10-2018 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 Pfam PF04055 Radical SAM superfamily 147 324 1.1E-29 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 11 439 1.1E-102 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 11 438 9.3E-170 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 10 441 60.358 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 Gene3D G3DSA:2.40.50.140 381 443 1.3E-15 T 11-10-2018 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 145 165 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 Pfam PF00919 Uncharacterized protein family UPF0004 11 103 3.5E-19 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 dqs_1127 19da11273f181337f9eb1a939687e8a7 443 Gene3D G3DSA:3.80.30.20 139 380 1.9E-73 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 SUPERFAMILY SSF51735 11 251 5.39E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 Gene3D G3DSA:3.40.50.720 2 259 1.6E-67 T 11-10-2018 dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 7.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 7.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 7.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 7.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 7.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 7.5E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 249 2.5E-52 T 11-10-2018 dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 4.9E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.9E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1231 530175ee6da6a33d7eca40e5c9773024 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.9E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4103 658c8447f569664e611de1a365665800 288 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 288 5.9E-85 T 11-10-2018 IPR005229 Conserved hypothetical protein CHP00255 dqs_4103 658c8447f569664e611de1a365665800 288 Pfam PF03755 YicC-like family, N-terminal region 2 154 1.1E-40 T 11-10-2018 IPR013527 YicC-like, N-terminal dqs_4103 658c8447f569664e611de1a365665800 288 Pfam PF08340 Domain of unknown function (DUF1732) 204 288 9.5E-36 T 11-10-2018 IPR013551 Domain of unknown function DUF1732 dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 SMART SM00054 151 179 34.0 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 SMART SM00054 66 94 0.74 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 SMART SM00054 29 57 35.0 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 ProSitePatterns PS00018 EF-hand calcium-binding domain. 75 87 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 SUPERFAMILY SSF47473 31 215 1.8E-15 T 11-10-2018 IPR011992 EF-hand domain pair dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 Pfam PF13202 EF hand 156 171 0.0011 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 Pfam PF13499 EF-hand domain pair 32 89 5.9E-8 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 Gene3D G3DSA:1.10.238.10 9 94 7.6E-13 T 11-10-2018 dqs_3760 c05d4025ba83cff34d4cf683c2ceab76 222 Gene3D G3DSA:1.10.238.10 95 218 2.5E-5 T 11-10-2018 dqs_1539 4b1694ecd05961e6397cd5aeb0d484d8 487 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 453 462 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 dqs_1539 4b1694ecd05961e6397cd5aeb0d484d8 487 Gene3D G3DSA:1.10.645.10 14 462 5.3E-96 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1539 4b1694ecd05961e6397cd5aeb0d484d8 487 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 52 77 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 dqs_1539 4b1694ecd05961e6397cd5aeb0d484d8 487 Pfam PF00374 Nickel-dependent hydrogenase 52 129 2.0E-18 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 dqs_1539 4b1694ecd05961e6397cd5aeb0d484d8 487 Pfam PF00374 Nickel-dependent hydrogenase 280 462 3.0E-12 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 dqs_1539 4b1694ecd05961e6397cd5aeb0d484d8 487 SUPERFAMILY SSF56762 10 462 6.67E-124 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1163 cc78e11d58c5a53037d393c18802998e 266 SUPERFAMILY SSF56300 29 235 1.09E-22 T 11-10-2018 dqs_1163 cc78e11d58c5a53037d393c18802998e 266 Pfam PF00149 Calcineurin-like phosphoesterase 30 229 6.9E-7 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 dqs_1163 cc78e11d58c5a53037d393c18802998e 266 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 266 99.345 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 dqs_1163 cc78e11d58c5a53037d393c18802998e 266 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 29 259 5.5E-79 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 dqs_1163 cc78e11d58c5a53037d393c18802998e 266 Gene3D G3DSA:3.60.21.10 28 251 5.4E-10 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like dqs_0933 1aff9f27859350d38c7582aa96538387 453 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 446 4.9E-230 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 dqs_0933 1aff9f27859350d38c7582aa96538387 453 SUPERFAMILY SSF56059 83 348 4.95E-74 T 11-10-2018 dqs_0933 1aff9f27859350d38c7582aa96538387 453 SUPERFAMILY SSF52440 1 113 7.91E-48 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_0933 1aff9f27859350d38c7582aa96538387 453 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_0933 1aff9f27859350d38c7582aa96538387 453 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_0933 1aff9f27859350d38c7582aa96538387 453 SMART SM00878 336 441 3.5E-66 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0933 1aff9f27859350d38c7582aa96538387 453 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 1.6E-84 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_0933 1aff9f27859350d38c7582aa96538387 453 SUPERFAMILY SSF51246 331 443 7.85E-44 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 dqs_0933 1aff9f27859350d38c7582aa96538387 453 Gene3D G3DSA:3.30.470.20 87 433 2.1E-156 T 11-10-2018 dqs_0933 1aff9f27859350d38c7582aa96538387 453 Gene3D G3DSA:3.30.1490.20 131 203 2.1E-156 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_0933 1aff9f27859350d38c7582aa96538387 453 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.0E-44 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0933 1aff9f27859350d38c7582aa96538387 453 Gene3D G3DSA:3.40.50.20 1 85 2.8E-34 T 11-10-2018 dqs_0933 1aff9f27859350d38c7582aa96538387 453 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 6.5E-39 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0887 af9605a2531f0e34955b54d484f97935 224 Gene3D G3DSA:3.40.190.10 105 191 6.7E-71 T 11-10-2018 dqs_0887 af9605a2531f0e34955b54d484f97935 224 SUPERFAMILY SSF53850 13 222 8.25E-65 T 11-10-2018 dqs_0887 af9605a2531f0e34955b54d484f97935 224 Gene3D G3DSA:3.40.190.10 15 212 6.7E-71 T 11-10-2018 dqs_0887 af9605a2531f0e34955b54d484f97935 224 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 158 179 - T 11-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 dqs_0887 af9605a2531f0e34955b54d484f97935 224 Pfam PF01634 ATP phosphoribosyltransferase 63 217 4.3E-49 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 dqs_0887 af9605a2531f0e34955b54d484f97935 224 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 14 199 9.0E-58 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 dqs_0887 af9605a2531f0e34955b54d484f97935 224 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 13 223 55.972 T 11-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 dqs_2463 11aca8ca74d7d4bf8b3f316b80f9059a 424 SUPERFAMILY SSF111369 83 321 3.4E-48 T 11-10-2018 dqs_2463 11aca8ca74d7d4bf8b3f316b80f9059a 424 Gene3D G3DSA:2.40.50.100 92 236 1.1E-81 T 11-10-2018 dqs_2463 11aca8ca74d7d4bf8b3f316b80f9059a 424 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 71 397 3.6E-67 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_2463 11aca8ca74d7d4bf8b3f316b80f9059a 424 Pfam PF13533 Biotin-lipoyl like 96 139 1.2E-12 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain dqs_2463 11aca8ca74d7d4bf8b3f316b80f9059a 424 Gene3D G3DSA:2.40.30.170 82 326 1.1E-81 T 11-10-2018 dqs_2463 11aca8ca74d7d4bf8b3f316b80f9059a 424 Gene3D G3DSA:1.10.287.470 127 200 1.1E-81 T 11-10-2018 dqs_2463 11aca8ca74d7d4bf8b3f316b80f9059a 424 Gene3D G3DSA:2.40.420.20 327 395 1.1E-81 T 11-10-2018 dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 367 398 1.6E-11 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 SMART SM00869 623 891 9.5E-29 T 11-10-2018 IPR005546 Autotransporter beta-domain dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 Gene3D G3DSA:2.40.128.130 579 900 8.0E-49 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 SUPERFAMILY SSF103515 587 900 2.75E-44 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 Pfam PF12951 Passenger-associated-transport-repeat 368 397 3.0E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 Pfam PF12951 Passenger-associated-transport-repeat 275 306 6.7E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 Pfam PF12951 Passenger-associated-transport-repeat 184 210 8.0E-4 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 SUPERFAMILY SSF51126 70 514 1.63E-27 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor dqs_1803 0dbb2b59b50d44fb306834df50d6f16f 902 Pfam PF03797 Autotransporter beta-domain 626 880 3.4E-37 T 11-10-2018 IPR005546 Autotransporter beta-domain dqs_2885 e39bec2aff27adce9055707305f24047 529 SUPERFAMILY SSF51905 22 344 1.55E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2885 e39bec2aff27adce9055707305f24047 529 Gene3D G3DSA:3.30.9.10 100 343 1.4E-127 T 11-10-2018 dqs_2885 e39bec2aff27adce9055707305f24047 529 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 421 498 5.1E-14 T 11-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_2885 e39bec2aff27adce9055707305f24047 529 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 35 45 1.4E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_2885 e39bec2aff27adce9055707305f24047 529 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 51 63 1.4E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_2885 e39bec2aff27adce9055707305f24047 529 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 96 108 1.4E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_2885 e39bec2aff27adce9055707305f24047 529 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 367 379 1.4E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_2885 e39bec2aff27adce9055707305f24047 529 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 34 1.4E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_2885 e39bec2aff27adce9055707305f24047 529 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 336 342 1.4E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_2885 e39bec2aff27adce9055707305f24047 529 Pfam PF01266 FAD dependent oxidoreductase 23 379 3.3E-53 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_2885 e39bec2aff27adce9055707305f24047 529 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 372 382 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_2885 e39bec2aff27adce9055707305f24047 529 Gene3D G3DSA:3.50.50.60 23 386 1.4E-127 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2885 e39bec2aff27adce9055707305f24047 529 Gene3D G3DSA:1.10.8.870 416 522 2.6E-17 T 11-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 dqs_1741 e92a8531c60b8605297bf093cc152131 118 Gene3D G3DSA:2.102.10.10 6 117 5.3E-11 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1741 e92a8531c60b8605297bf093cc152131 118 SUPERFAMILY SSF50022 7 112 8.51E-20 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1741 e92a8531c60b8605297bf093cc152131 118 Pfam PF00355 Rieske [2Fe-2S] domain 8 95 5.6E-9 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_3357 17cbf5e987bc653c1f351c523f4c25c7 163 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 11 160 5.5E-47 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC dqs_3357 17cbf5e987bc653c1f351c523f4c25c7 163 Gene3D G3DSA:3.90.960.10 4 162 4.6E-43 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 dqs_3357 17cbf5e987bc653c1f351c523f4c25c7 163 Pfam PF04073 Aminoacyl-tRNA editing domain 40 151 1.7E-22 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 dqs_3357 17cbf5e987bc653c1f351c523f4c25c7 163 SUPERFAMILY SSF55826 9 160 2.62E-37 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 dqs_3357 17cbf5e987bc653c1f351c523f4c25c7 163 PIRSF PIRSF006181 6 163 2.8E-44 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC dqs_0993 b1a21a3bb84ead01b41ec37fd3c618de 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 2.8E-162 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_0993 b1a21a3bb84ead01b41ec37fd3c618de 427 PIRSF PIRSF006066 1 427 6.4E-157 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_0993 b1a21a3bb84ead01b41ec37fd3c618de 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 416 5.8E-135 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit dqs_3199 3afa8d6332dd4d12e3550d174cf58e46 306 Gene3D G3DSA:3.20.20.70 1 302 4.6E-136 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3199 3afa8d6332dd4d12e3550d174cf58e46 306 SUPERFAMILY SSF51569 1 296 1.37E-72 T 11-10-2018 dqs_3199 3afa8d6332dd4d12e3550d174cf58e46 306 Pfam PF00682 HMGL-like 7 281 3.6E-58 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 dqs_0227 f00bbcf41e28ece91fad2fbfb1d099de 460 SUPERFAMILY SSF53383 9 448 1.34E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_0227 f00bbcf41e28ece91fad2fbfb1d099de 460 Pfam PF00202 Aminotransferase class-III 31 446 3.0E-94 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_0227 f00bbcf41e28ece91fad2fbfb1d099de 460 Gene3D G3DSA:3.90.1150.10 10 447 5.4E-149 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_0227 f00bbcf41e28ece91fad2fbfb1d099de 460 PIRSF PIRSF000521 24 449 3.8E-29 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_0227 f00bbcf41e28ece91fad2fbfb1d099de 460 Gene3D G3DSA:3.40.640.10 65 343 5.4E-149 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_0227 f00bbcf41e28ece91fad2fbfb1d099de 460 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 253 290 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_2013 65bde4a733ddbe550b508b22cba44bb5 139 Gene3D G3DSA:3.30.429.10 67 135 7.4E-12 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_2013 65bde4a733ddbe550b508b22cba44bb5 139 Gene3D G3DSA:3.30.429.10 1 66 1.5E-13 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_2013 65bde4a733ddbe550b508b22cba44bb5 139 SUPERFAMILY SSF55331 2 125 1.48E-16 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 PIRSF PIRSF000770 2 241 9.6E-40 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 2 236 65.195 T 11-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 203 229 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 SUPERFAMILY SSF88659 146 233 4.11E-22 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 PRINTS PR00046 Major sigma-70 factor signature 218 229 1.5E-12 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 PRINTS PR00046 Major sigma-70 factor signature 186 198 1.5E-12 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 PRINTS PR00046 Major sigma-70 factor signature 40 53 1.5E-12 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 PRINTS PR00046 Major sigma-70 factor signature 203 218 1.5E-12 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 231 5.5E-35 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 Pfam PF04545 Sigma-70, region 4 182 231 1.7E-17 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 Pfam PF04539 Sigma-70 region 3 95 153 4.8E-12 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 Gene3D G3DSA:1.10.1740.10 2 82 7.7E-28 T 11-10-2018 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 Gene3D G3DSA:1.20.140.160 84 234 1.3E-46 T 11-10-2018 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 SUPERFAMILY SSF88946 3 85 4.19E-24 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 40 53 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 Pfam PF04542 Sigma-70 region 2 13 85 5.2E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 13 233 7.3E-84 T 11-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 dqs_1218 9a94f5e7cbbdf09a9e15defd3180a1c7 256 SUPERFAMILY SSF88659 86 155 1.4E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_3831 f813650a2c47e04709627edf90bd78e7 370 Pfam PF01966 HD domain 181 302 2.2E-19 T 11-10-2018 IPR006674 HD domain dqs_3831 f813650a2c47e04709627edf90bd78e7 370 SMART SM00448 12 126 4.3E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3831 f813650a2c47e04709627edf90bd78e7 370 SMART SM00471 175 312 4.8E-8 T 11-10-2018 IPR003607 HD/PDEase domain dqs_3831 f813650a2c47e04709627edf90bd78e7 370 Gene3D G3DSA:1.10.3210.10 154 356 2.9E-74 T 11-10-2018 dqs_3831 f813650a2c47e04709627edf90bd78e7 370 Pfam PF00072 Response regulator receiver domain 14 125 1.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3831 f813650a2c47e04709627edf90bd78e7 370 SUPERFAMILY SSF52172 8 142 2.28E-36 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3831 f813650a2c47e04709627edf90bd78e7 370 SUPERFAMILY SSF109604 166 343 4.28E-42 T 11-10-2018 dqs_3831 f813650a2c47e04709627edf90bd78e7 370 Gene3D G3DSA:3.40.50.2300 2 146 4.5E-37 T 11-10-2018 dqs_1253 4301120884deb5cc1b25acf4ff4d7ac6 99 Pfam PF00034 Cytochrome c 30 98 2.4E-4 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1253 4301120884deb5cc1b25acf4ff4d7ac6 99 Gene3D G3DSA:1.10.760.10 26 98 6.0E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1253 4301120884deb5cc1b25acf4ff4d7ac6 99 SUPERFAMILY SSF46626 13 98 4.73E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_0273 aab294d2d6a77019b35f3d3740ca176e 449 Gene3D G3DSA:3.40.50.12780 3 326 6.7E-25 T 11-10-2018 dqs_0273 aab294d2d6a77019b35f3d3740ca176e 449 Pfam PF13193 AMP-binding enzyme C-terminal domain 359 430 2.2E-6 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_0273 aab294d2d6a77019b35f3d3740ca176e 449 SUPERFAMILY SSF56801 8 443 3.4E-53 T 11-10-2018 dqs_0273 aab294d2d6a77019b35f3d3740ca176e 449 Pfam PF00501 AMP-binding enzyme 8 359 4.2E-19 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_0273 aab294d2d6a77019b35f3d3740ca176e 449 Gene3D G3DSA:3.30.300.30 342 448 5.4E-15 T 11-10-2018 dqs_2043 c426e539115c9501313399294be3698b 450 Gene3D G3DSA:3.40.640.10 67 348 1.1E-145 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2043 c426e539115c9501313399294be3698b 450 Pfam PF00202 Aminotransferase class-III 28 443 4.4E-105 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_2043 c426e539115c9501313399294be3698b 450 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 17 444 6.6E-156 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 dqs_2043 c426e539115c9501313399294be3698b 450 Gene3D G3DSA:3.90.1150.10 16 439 1.1E-145 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2043 c426e539115c9501313399294be3698b 450 SUPERFAMILY SSF53383 14 446 2.39E-121 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2043 c426e539115c9501313399294be3698b 450 PIRSF PIRSF000521 23 448 3.0E-27 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_0142 abb9aee95078032a14b699df841fd90e 306 Gene3D G3DSA:3.20.10.10 131 302 2.3E-50 T 11-10-2018 dqs_0142 abb9aee95078032a14b699df841fd90e 306 Pfam PF01063 Amino-transferase class IV 36 267 2.2E-49 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 dqs_0142 abb9aee95078032a14b699df841fd90e 306 SUPERFAMILY SSF56752 1 303 1.31E-98 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 dqs_0142 abb9aee95078032a14b699df841fd90e 306 Gene3D G3DSA:3.30.470.10 2 130 3.9E-41 T 11-10-2018 dqs_0142 abb9aee95078032a14b699df841fd90e 306 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 304 4.6E-123 T 11-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 dqs_2526 2c6be12a72b22c492897f1d2006f0067 796 Pfam PF00384 Molybdopterin oxidoreductase 62 523 7.7E-61 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_2526 2c6be12a72b22c492897f1d2006f0067 796 Gene3D G3DSA:3.90.55.10 56 573 6.1E-175 T 11-10-2018 dqs_2526 2c6be12a72b22c492897f1d2006f0067 796 Gene3D G3DSA:3.40.228.10 159 608 6.1E-175 T 11-10-2018 dqs_2526 2c6be12a72b22c492897f1d2006f0067 796 Gene3D G3DSA:3.40.50.740 62 532 6.1E-175 T 11-10-2018 dqs_2526 2c6be12a72b22c492897f1d2006f0067 796 SUPERFAMILY SSF53706 48 644 6.94E-141 T 11-10-2018 dqs_2526 2c6be12a72b22c492897f1d2006f0067 796 Gene3D G3DSA:2.40.40.20 616 781 5.3E-48 T 11-10-2018 dqs_2526 2c6be12a72b22c492897f1d2006f0067 796 Pfam PF01568 Molydopterin dinucleotide binding domain 642 764 6.6E-23 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_2526 2c6be12a72b22c492897f1d2006f0067 796 SUPERFAMILY SSF50692 637 785 8.82E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_3483 165d625043ff70b39fcf2973d3d9fa65 212 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 210 35.857 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 dqs_3483 165d625043ff70b39fcf2973d3d9fa65 212 Pfam PF00117 Glutamine amidotransferase class-I 6 207 4.1E-18 T 11-10-2018 IPR017926 Glutamine amidotransferase dqs_3483 165d625043ff70b39fcf2973d3d9fa65 212 SUPERFAMILY SSF52317 4 210 9.63E-54 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3483 165d625043ff70b39fcf2973d3d9fa65 212 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 210 2.2E-62 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 dqs_3483 165d625043ff70b39fcf2973d3d9fa65 212 Gene3D G3DSA:3.40.50.880 1 211 3.0E-72 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3483 165d625043ff70b39fcf2973d3d9fa65 212 PIRSF PIRSF000495 2 212 7.5E-67 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 dqs_0880 7aae36ccc2dd955b175cfca0b9953427 215 Pfam PF05494 MlaC protein 37 200 8.2E-58 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC dqs_0880 7aae36ccc2dd955b175cfca0b9953427 215 Gene3D G3DSA:1.10.10.640 74 198 7.2E-61 T 11-10-2018 dqs_0880 7aae36ccc2dd955b175cfca0b9953427 215 PIRSF PIRSF004649 1 212 6.0E-58 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC dqs_0880 7aae36ccc2dd955b175cfca0b9953427 215 Gene3D G3DSA:3.10.450.50 37 173 7.2E-61 T 11-10-2018 dqs_2051 5064553bd0ea01eb4b279a832f6edc64 391 Gene3D G3DSA:3.40.50.2000 173 358 1.4E-7 T 11-10-2018 dqs_2051 5064553bd0ea01eb4b279a832f6edc64 391 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 2 379 37.856 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 dqs_2051 5064553bd0ea01eb4b279a832f6edc64 391 SUPERFAMILY SSF53756 4 378 4.04E-36 T 11-10-2018 dqs_2051 5064553bd0ea01eb4b279a832f6edc64 391 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 4 375 3.2E-107 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 dqs_2051 5064553bd0ea01eb4b279a832f6edc64 391 Pfam PF02684 Lipid-A-disaccharide synthetase 5 373 9.9E-97 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 dqs_0353 0bb3b66601aa9572da51568ddbe7f02b 148 PIRSF PIRSF000027 7 148 1.2E-31 T 11-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 dqs_0353 0bb3b66601aa9572da51568ddbe7f02b 148 Gene3D G3DSA:1.20.120.10 24 148 4.9E-29 T 11-10-2018 dqs_0353 0bb3b66601aa9572da51568ddbe7f02b 148 Pfam PF01322 Cytochrome C' 29 146 3.9E-31 T 11-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 dqs_0353 0bb3b66601aa9572da51568ddbe7f02b 148 SUPERFAMILY SSF47175 25 148 4.56E-33 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 dqs_3595 d03babca12d5cc803f6f3696b1cf3af4 59 PIRSF PIRSF000071 5 59 1.6E-25 T 11-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 dqs_3595 d03babca12d5cc803f6f3696b1cf3af4 59 SUPERFAMILY SSF57802 5 58 2.19E-22 T 11-10-2018 dqs_3595 d03babca12d5cc803f6f3696b1cf3af4 59 PRINTS PR00163 Rubredoxin signature 38 54 6.7E-8 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_3595 d03babca12d5cc803f6f3696b1cf3af4 59 PRINTS PR00163 Rubredoxin signature 8 24 6.7E-8 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_3595 d03babca12d5cc803f6f3696b1cf3af4 59 Pfam PF00301 Rubredoxin 9 54 2.8E-22 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_3595 d03babca12d5cc803f6f3696b1cf3af4 59 Gene3D G3DSA:2.20.28.10 1 59 1.3E-27 T 11-10-2018 dqs_3229 f271f379dc6ac165ae0cab7deaa423dd 254 SUPERFAMILY SSF46785 178 251 2.12E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3229 f271f379dc6ac165ae0cab7deaa423dd 254 Pfam PF00027 Cyclic nucleotide-binding domain 62 146 1.8E-18 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_3229 f271f379dc6ac165ae0cab7deaa423dd 254 Gene3D G3DSA:2.60.120.10 29 173 3.4E-40 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3229 f271f379dc6ac165ae0cab7deaa423dd 254 Pfam PF13545 Crp-like helix-turn-helix domain 180 251 2.7E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_3229 f271f379dc6ac165ae0cab7deaa423dd 254 Gene3D G3DSA:1.10.10.10 174 252 4.0E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3229 f271f379dc6ac165ae0cab7deaa423dd 254 SUPERFAMILY SSF51206 30 169 9.03E-33 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_3229 f271f379dc6ac165ae0cab7deaa423dd 254 SMART SM00419 197 245 3.1E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_3229 f271f379dc6ac165ae0cab7deaa423dd 254 SMART SM00100 41 159 3.4E-16 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_3550 81d1e68b81e63497487babda06e1c64a 260 Pfam PF07650 KH domain 38 110 1.6E-18 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3550 81d1e68b81e63497487babda06e1c64a 260 SUPERFAMILY SSF54821 108 206 1.96E-40 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3550 81d1e68b81e63497487babda06e1c64a 260 SMART SM00322 60 125 1.4E-7 T 11-10-2018 IPR004087 K Homology domain GO:0003676 dqs_3550 81d1e68b81e63497487babda06e1c64a 260 Gene3D G3DSA:3.30.300.20 17 107 6.4E-29 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_3550 81d1e68b81e63497487babda06e1c64a 260 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 3.2E-95 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 dqs_3550 81d1e68b81e63497487babda06e1c64a 260 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 11-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3550 81d1e68b81e63497487babda06e1c64a 260 Gene3D G3DSA:3.30.1140.32 108 208 2.8E-45 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3550 81d1e68b81e63497487babda06e1c64a 260 SUPERFAMILY SSF54814 2 106 4.97E-38 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 dqs_3550 81d1e68b81e63497487babda06e1c64a 260 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.3E-41 T 11-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3550 81d1e68b81e63497487babda06e1c64a 260 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.27 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 SUPERFAMILY SSF52440 1 101 6.47E-36 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 2.5E-36 T 11-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 SUPERFAMILY SSF56059 102 322 5.13E-67 T 11-10-2018 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 Gene3D G3DSA:3.90.600.10 328 425 2.4E-35 T 11-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 294 1.3E-77 T 11-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 SUPERFAMILY SSF51246 327 421 2.04E-33 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 SMART SM01210 328 421 2.0E-55 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 SMART SM01209 101 294 2.8E-135 T 11-10-2018 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 Gene3D G3DSA:3.40.50.20 1 93 9.8E-38 T 11-10-2018 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 421 3.9E-175 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 Gene3D G3DSA:3.30.470.20 189 327 1.3E-58 T 11-10-2018 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 329 419 2.6E-30 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 421 43.869 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 dqs_3035 1427535168f9dc57a84138bf9fd0ae7f 425 Gene3D G3DSA:3.30.1490.20 119 188 7.3E-27 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_0814 52437e833336bbc8a01ed35c4d56675e 150 SMART SM00450 26 133 1.5E-11 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_0814 52437e833336bbc8a01ed35c4d56675e 150 Gene3D G3DSA:3.40.250.10 20 150 2.9E-34 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_0814 52437e833336bbc8a01ed35c4d56675e 150 Pfam PF00581 Rhodanese-like domain 41 126 6.2E-11 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_0814 52437e833336bbc8a01ed35c4d56675e 150 SUPERFAMILY SSF52821 7 149 3.4E-22 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_4128 d85f49ccd5f70e1c704421b986207741 426 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 423 1.6E-54 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 dqs_4128 d85f49ccd5f70e1c704421b986207741 426 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 42 425 2.6E-92 T 11-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 dqs_4128 d85f49ccd5f70e1c704421b986207741 426 SUPERFAMILY SSF53335 142 424 6.84E-69 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_4128 d85f49ccd5f70e1c704421b986207741 426 Gene3D G3DSA:3.30.70.1170 175 230 3.1E-18 T 11-10-2018 dqs_4128 d85f49ccd5f70e1c704421b986207741 426 Gene3D G3DSA:3.40.50.150 231 425 4.9E-59 T 11-10-2018 dqs_4128 d85f49ccd5f70e1c704421b986207741 426 SUPERFAMILY SSF48013 14 151 8.5E-19 T 11-10-2018 IPR035926 NusB-like superfamily dqs_4128 d85f49ccd5f70e1c704421b986207741 426 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 315 326 - T 11-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 dqs_4128 d85f49ccd5f70e1c704421b986207741 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 1.1E-25 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_4128 d85f49ccd5f70e1c704421b986207741 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 1.1E-25 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_4128 d85f49ccd5f70e1c704421b986207741 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 316 328 1.1E-25 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_4128 d85f49ccd5f70e1c704421b986207741 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 366 382 1.1E-25 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_4128 d85f49ccd5f70e1c704421b986207741 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 407 424 1.1E-25 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_4128 d85f49ccd5f70e1c704421b986207741 426 Gene3D G3DSA:1.10.940.10 10 146 4.5E-17 T 11-10-2018 IPR035926 NusB-like superfamily dqs_4128 d85f49ccd5f70e1c704421b986207741 426 Pfam PF01029 NusB family 34 127 8.6E-7 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 dqs_1084 34f023475232824422b9b6f307064b1d 107 Gene3D G3DSA:3.40.30.10 6 103 7.9E-32 T 11-10-2018 dqs_1084 34f023475232824422b9b6f307064b1d 107 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 101 1.3E-44 T 11-10-2018 IPR004480 Monothiol glutaredoxin-related dqs_1084 34f023475232824422b9b6f307064b1d 107 Pfam PF00462 Glutaredoxin 16 81 1.2E-16 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 dqs_1084 34f023475232824422b9b6f307064b1d 107 PIRSF PIRSF005894 1 107 5.5E-47 T 11-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 dqs_1084 34f023475232824422b9b6f307064b1d 107 SUPERFAMILY SSF52833 1 105 6.36E-33 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 Gene3D G3DSA:3.30.450.20 172 289 1.6E-20 T 11-10-2018 dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 SMART SM00086 248 290 8.1E-4 T 11-10-2018 IPR001610 PAC motif dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 Pfam PF00072 Response regulator receiver domain 7 122 6.4E-9 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 187 294 3.3E-13 T 11-10-2018 IPR000014 PAS domain dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 Gene3D G3DSA:3.30.70.270 290 463 4.7E-53 T 11-10-2018 dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 SMART SM00448 5 124 0.0025 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 SUPERFAMILY SSF55785 187 289 1.48E-21 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 SUPERFAMILY SSF55073 302 462 2.82E-43 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 Pfam PF00990 Diguanylate cyclase, GGDEF domain 298 459 1.1E-41 T 11-10-2018 IPR000160 GGDEF domain dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 SMART SM00267 286 463 1.0E-51 T 11-10-2018 IPR000160 GGDEF domain dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 Gene3D G3DSA:3.40.50.2300 6 133 1.1E-15 T 11-10-2018 dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 SUPERFAMILY SSF52172 5 176 2.56E-17 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 294 461 2.9E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_0143 d2b47acf2255329fc9e7ab8205a60649 479 Pfam PF13426 PAS domain 192 289 7.5E-11 T 11-10-2018 IPR000014 PAS domain dqs_0272 987b3c4284b449174c5c560bf65d3301 103 Pfam PF07977 FabA-like domain 7 40 5.7E-7 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 dqs_0272 987b3c4284b449174c5c560bf65d3301 103 Gene3D G3DSA:3.10.129.10 3 101 3.7E-22 T 11-10-2018 dqs_0272 987b3c4284b449174c5c560bf65d3301 103 SUPERFAMILY SSF54637 7 95 9.16E-14 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_0272 987b3c4284b449174c5c560bf65d3301 103 PIRSF PIRSF030962 3 97 1.3E-10 T 11-10-2018 IPR016962 Dehydrase, ECs4332, predicted KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 Gene3D G3DSA:1.10.287.130 340 441 4.1E-16 T 11-10-2018 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 SMART SM00387 489 605 1.5E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 SUPERFAMILY SSF103190 55 204 1.1E-23 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 492 602 5.0E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 SUPERFAMILY SSF55874 440 607 5.37E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 SUPERFAMILY SSF47384 356 399 8.44E-6 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 SUPERFAMILY SSF103190 212 291 1.1E-9 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 Pfam PF00512 His Kinase A (phospho-acceptor) domain 364 438 2.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 SMART SM00388 364 447 6.1E-4 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 Gene3D G3DSA:3.30.450.20 87 204 3.0E-16 T 11-10-2018 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 558 8.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 544 8.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 PRINTS PR00344 Bacterial sensor protein C-terminal signature 561 579 8.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 602 8.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3811 36223627ed01b92557d76c2c85a60fcb 612 Gene3D G3DSA:3.30.565.10 448 607 4.2E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1898 84e66330165f779bcc4366f9bb3654e1 146 SMART SM00116 10 57 2.5E-7 T 11-10-2018 IPR000644 CBS domain dqs_1898 84e66330165f779bcc4366f9bb3654e1 146 SMART SM00116 74 122 2.7E-4 T 11-10-2018 IPR000644 CBS domain dqs_1898 84e66330165f779bcc4366f9bb3654e1 146 SUPERFAMILY SSF54631 1 119 2.02E-32 T 11-10-2018 dqs_1898 84e66330165f779bcc4366f9bb3654e1 146 Gene3D G3DSA:3.10.580.10 1 133 4.7E-36 T 11-10-2018 dqs_1898 84e66330165f779bcc4366f9bb3654e1 146 Pfam PF00571 CBS domain 3 52 2.9E-12 T 11-10-2018 IPR000644 CBS domain dqs_1898 84e66330165f779bcc4366f9bb3654e1 146 Pfam PF00571 CBS domain 67 119 3.9E-7 T 11-10-2018 IPR000644 CBS domain dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 SUPERFAMILY SSF52540 14 235 1.69E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 Gene3D G3DSA:2.40.30.10 322 425 6.1E-38 T 11-10-2018 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 Gene3D G3DSA:2.40.30.10 226 320 2.2E-24 T 11-10-2018 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 SUPERFAMILY SSF50447 226 319 4.48E-19 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 68 83 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 Gene3D G3DSA:3.40.50.300 6 222 6.1E-66 T 11-10-2018 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 15 425 8.5E-174 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 SUPERFAMILY SSF50465 325 425 1.58E-33 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 PRINTS PR00315 GTP-binding elongation factor signature 95 105 1.4E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 PRINTS PR00315 GTP-binding elongation factor signature 75 83 1.4E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 PRINTS PR00315 GTP-binding elongation factor signature 16 29 1.4E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 PRINTS PR00315 GTP-binding elongation factor signature 148 157 1.4E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 PRINTS PR00315 GTP-binding elongation factor signature 111 122 1.4E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_0439 b93a6ed6a7347d4130f2789cfd1b8878 426 Pfam PF00009 Elongation factor Tu GTP binding domain 15 211 7.5E-41 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 SUPERFAMILY SSF51735 3 240 8.82E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 Gene3D G3DSA:3.40.50.720 1 241 4.2E-79 T 11-10-2018 dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 Pfam PF00106 short chain dehydrogenase 4 194 8.5E-57 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 9.0E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.0E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 9.0E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.2E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.2E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.2E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 1.2E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.2E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.2E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4058 9ae84b4048104fab2c7c985c43057b5c 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 188 2.6E-6 T 11-10-2018 dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 SUPERFAMILY SSF55781 21 197 6.98E-24 T 11-10-2018 dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 Gene3D G3DSA:3.40.50.300 482 785 1.1E-98 T 11-10-2018 dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 Gene3D G3DSA:3.30.450.90 344 481 4.9E-37 T 11-10-2018 dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 SMART SM00382 508 643 0.0082 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 Gene3D G3DSA:3.30.450.40 13 201 3.0E-28 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 SUPERFAMILY SSF52540 369 783 7.84E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 SMART SM00065 36 195 1.3E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 Pfam PF01590 GAF domain 36 184 1.6E-8 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 Pfam PF00437 Type II/IV secretion system protein 378 647 1.0E-70 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 236 338 1.8E-14 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 SUPERFAMILY SSF160246 201 335 5.49E-14 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily dqs_3466 67671df0ef650a3cd970ff3c438867cf 786 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 575 589 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 PIRSF PIRSF001415 1 333 1.9E-146 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 SMART SM01004 7 330 5.3E-238 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 Gene3D G3DSA:3.20.20.70 2 333 2.2E-143 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 Pfam PF00490 Delta-aminolevulinic acid dehydratase 10 329 5.3E-138 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 SUPERFAMILY SSF51569 5 332 3.66E-139 T 11-10-2018 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 274 289 7.5E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 157 176 7.5E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 195 214 7.5E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 304 323 7.5E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 126 140 7.5E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_2960 e32b6e7fd9527d6a7f7697696f4a5600 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 249 265 7.5E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 dqs_0696 d49bc96120ffe7912b4a7ac756fce330 226 Hamap MF_01584 UPF0502 protein YceH [yceH]. 14 223 32.714 T 11-10-2018 IPR007432 Protein of unknown function DUF480 dqs_0696 d49bc96120ffe7912b4a7ac756fce330 226 Gene3D G3DSA:1.10.10.10 1 99 2.6E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0696 d49bc96120ffe7912b4a7ac756fce330 226 SUPERFAMILY SSF46785 98 175 4.57E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0696 d49bc96120ffe7912b4a7ac756fce330 226 Pfam PF04337 Protein of unknown function, DUF480 14 161 7.5E-61 T 11-10-2018 IPR007432 Protein of unknown function DUF480 dqs_0696 d49bc96120ffe7912b4a7ac756fce330 226 Gene3D G3DSA:1.10.10.10 100 179 3.7E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0696 d49bc96120ffe7912b4a7ac756fce330 226 SUPERFAMILY SSF46785 12 92 1.09E-28 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SMART SM00387 758 868 2.1E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Gene3D G3DSA:1.10.287.130 613 711 1.5E-18 T 11-10-2018 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SMART SM00388 648 716 2.0E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SUPERFAMILY SSF55785 505 618 6.6E-19 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SUPERFAMILY SSF55785 365 487 3.91E-24 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Gene3D G3DSA:3.30.450.20 365 489 3.4E-23 T 11-10-2018 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Pfam PF00512 His Kinase A (phospho-acceptor) domain 649 714 5.1E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Gene3D G3DSA:3.30.450.20 500 612 5.5E-23 T 11-10-2018 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Gene3D G3DSA:3.30.450.20 254 364 7.1E-28 T 11-10-2018 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SUPERFAMILY SSF55785 258 369 4.47E-26 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Pfam PF08447 PAS fold 401 477 1.2E-12 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Pfam PF08447 PAS fold 277 359 3.9E-20 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Pfam PF08447 PAS fold 524 610 6.0E-19 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 759 867 9.7E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SUPERFAMILY SSF55874 705 867 7.6E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 Gene3D G3DSA:3.30.565.10 712 868 6.4E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 253 373 5.9E-15 T 11-10-2018 IPR000014 PAS domain dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 534 623 6.7E-10 T 11-10-2018 IPR000014 PAS domain dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 376 498 1.5E-24 T 11-10-2018 IPR000014 PAS domain dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SUPERFAMILY SSF47384 634 715 1.51E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 PRINTS PR00344 Bacterial sensor protein C-terminal signature 854 867 6.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 PRINTS PR00344 Bacterial sensor protein C-terminal signature 815 825 6.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 PRINTS PR00344 Bacterial sensor protein C-terminal signature 830 848 6.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 PRINTS PR00344 Bacterial sensor protein C-terminal signature 797 811 6.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SMART SM00086 325 367 1.0E-4 T 11-10-2018 IPR001610 PAC motif dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SMART SM00086 575 617 1.7E-9 T 11-10-2018 IPR001610 PAC motif dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SMART SM00086 451 491 0.0064 T 11-10-2018 IPR001610 PAC motif dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SMART SM00091 379 444 1.7E-11 T 11-10-2018 IPR000014 PAS domain dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SMART SM00091 499 568 78.0 T 11-10-2018 IPR000014 PAS domain dqs_3522 d0ae690c835b1f440cfbd8f6d58ca65d 868 SMART SM00091 253 319 5.9E-9 T 11-10-2018 IPR000014 PAS domain dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 SUPERFAMILY SSF53098 270 475 3.79E-54 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 Gene3D G3DSA:2.30.30.130 477 548 2.0E-9 T 11-10-2018 IPR009004 Transposase, Mu, C-terminal dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 SUPERFAMILY SSF46955 5 69 4.21E-15 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 Gene3D G3DSA:1.10.10.10 4 72 1.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 Pfam PF02316 Mu DNA-binding domain 12 133 1.8E-14 T 11-10-2018 IPR003314 Mu-type HTH domain GO:0003677 dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 Pfam PF00665 Integrase core domain 272 392 5.3E-17 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 Gene3D G3DSA:3.30.420.10 260 476 4.1E-56 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 Pfam PF09299 Mu transposase, C-terminal 487 545 8.9E-17 T 11-10-2018 IPR015378 Transposase-like, Mu, C-terminal dqs_0585 ce24e7ba0345b8d0a813a98b7214ef0e 703 SUPERFAMILY SSF50610 472 547 5.1E-21 T 11-10-2018 IPR009004 Transposase, Mu, C-terminal dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 PIRSF PIRSF016578 217 382 8.0E-11 T 11-10-2018 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 PIRSF PIRSF016578 134 197 16.0 T 11-10-2018 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 PIRSF PIRSF016578 12 93 0.012 T 11-10-2018 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 Gene3D G3DSA:2.40.110.10 126 237 1.1E-43 T 11-10-2018 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 123 1.4E-16 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 SUPERFAMILY SSF47203 231 383 5.32E-49 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 Gene3D G3DSA:1.10.540.10 7 125 4.4E-28 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 219 1.5E-21 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 SUPERFAMILY SSF56645 11 243 4.32E-62 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 Gene3D G3DSA:1.20.140.10 238 383 1.0E-45 T 11-10-2018 dqs_2086 53ac206f5b6889a7104388fa4df432ec 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 381 2.2E-45 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_2338 256776201504063e9cbef7822f6376ae 340 SUPERFAMILY SSF53850 27 336 4.35E-81 T 11-10-2018 dqs_2338 256776201504063e9cbef7822f6376ae 340 PIRSF PIRSF002825 1 340 9.4E-83 T 11-10-2018 IPR026045 Ferric binding protein dqs_2338 256776201504063e9cbef7822f6376ae 340 Pfam PF13343 Bacterial extracellular solute-binding protein 74 307 2.2E-26 T 11-10-2018 dqs_2338 256776201504063e9cbef7822f6376ae 340 Gene3D G3DSA:3.40.190.10 29 302 4.4E-122 T 11-10-2018 dqs_2338 256776201504063e9cbef7822f6376ae 340 Gene3D G3DSA:3.40.190.10 125 338 4.4E-122 T 11-10-2018 dqs_2129 a5943dff392897615ea0980c2076073f 264 SUPERFAMILY SSF56529 5 263 3.14E-74 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2129 a5943dff392897615ea0980c2076073f 264 Gene3D G3DSA:3.90.850.10 3 263 3.5E-79 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2129 a5943dff392897615ea0980c2076073f 264 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 81 260 7.5E-11 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 dqs_0985 935938cc7eae7f586eb3fb3f4fbaa439 444 Gene3D G3DSA:3.30.465.10 344 426 6.5E-33 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 dqs_0985 935938cc7eae7f586eb3fb3f4fbaa439 444 Pfam PF01595 Domain of unknown function DUF21 4 196 9.8E-43 T 11-10-2018 IPR002550 CNNM, transmembrane domain dqs_0985 935938cc7eae7f586eb3fb3f4fbaa439 444 Pfam PF00571 CBS domain 283 329 7.8E-6 T 11-10-2018 IPR000644 CBS domain dqs_0985 935938cc7eae7f586eb3fb3f4fbaa439 444 SUPERFAMILY SSF54631 199 333 1.25E-27 T 11-10-2018 dqs_0985 935938cc7eae7f586eb3fb3f4fbaa439 444 SMART SM01091 344 426 5.6E-29 T 11-10-2018 IPR005170 Transporter-associated domain dqs_0985 935938cc7eae7f586eb3fb3f4fbaa439 444 SUPERFAMILY SSF56176 342 431 3.27E-22 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_0985 935938cc7eae7f586eb3fb3f4fbaa439 444 Gene3D G3DSA:3.10.580.10 192 343 1.5E-45 T 11-10-2018 dqs_0985 935938cc7eae7f586eb3fb3f4fbaa439 444 Pfam PF03471 Transporter associated domain 345 425 1.8E-20 T 11-10-2018 IPR005170 Transporter-associated domain dqs_0351 57bbc907953d4aec71d81c5966d6a0a3 347 SUPERFAMILY SSF53850 24 333 4.48E-79 T 11-10-2018 dqs_0351 57bbc907953d4aec71d81c5966d6a0a3 347 Gene3D G3DSA:3.40.190.10 26 320 1.9E-95 T 11-10-2018 dqs_0351 57bbc907953d4aec71d81c5966d6a0a3 347 Pfam PF12849 PBP superfamily domain 19 302 7.4E-50 T 11-10-2018 IPR024370 PBP domain dqs_0351 57bbc907953d4aec71d81c5966d6a0a3 347 Gene3D G3DSA:3.40.190.10 98 274 1.9E-95 T 11-10-2018 dqs_0351 57bbc907953d4aec71d81c5966d6a0a3 347 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 24 326 5.3E-82 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 dqs_0351 57bbc907953d4aec71d81c5966d6a0a3 347 PIRSF PIRSF002756 9 335 6.8E-84 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 dqs_1123 ae61df4b7c3d57fb8d9716a2d88f2ebf 580 SUPERFAMILY SSF53474 221 502 1.7E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1123 ae61df4b7c3d57fb8d9716a2d88f2ebf 580 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 94 261 1.2E-67 T 11-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 dqs_1123 ae61df4b7c3d57fb8d9716a2d88f2ebf 580 Gene3D G3DSA:3.40.50.1820 251 513 3.8E-11 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1123 ae61df4b7c3d57fb8d9716a2d88f2ebf 580 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 55 577 2.0E-216 T 11-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 SUPERFAMILY SSF53850 86 269 1.68E-58 T 11-10-2018 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 Gene3D G3DSA:3.30.70.260 264 354 2.8E-30 T 11-10-2018 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 TIGRFAM TIGR01807 CM_P2: chorismate mutase 5 75 3.5E-26 T 11-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 SMART SM00830 9 85 2.0E-29 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 SUPERFAMILY SSF48600 3 89 2.14E-21 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 SUPERFAMILY SSF55021 256 350 7.05E-28 T 11-10-2018 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 Pfam PF01817 Chorismate mutase type II 9 83 1.4E-23 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 Gene3D G3DSA:3.40.190.10 167 251 1.4E-57 T 11-10-2018 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 Gene3D G3DSA:3.40.190.10 89 259 1.4E-57 T 11-10-2018 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 299 306 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 Pfam PF01842 ACT domain 273 336 6.7E-10 T 11-10-2018 IPR002912 ACT domain dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 PIRSF PIRSF001500 1 354 2.5E-139 T 11-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 Gene3D G3DSA:1.20.59.10 1 85 3.1E-27 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 237 259 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 dqs_1176 6d34c490c3f156d24b6ec5c195d566cc 354 Pfam PF00800 Prephenate dehydratase 87 263 1.4E-59 T 11-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 dqs_3407 77df120bda7d6686ab4f1d417ba0e24e 408 Gene3D G3DSA:3.40.50.2000 205 368 1.4E-39 T 11-10-2018 dqs_3407 77df120bda7d6686ab4f1d417ba0e24e 408 Pfam PF00534 Glycosyl transferases group 1 217 365 2.6E-28 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_3407 77df120bda7d6686ab4f1d417ba0e24e 408 Pfam PF13439 Glycosyltransferase Family 4 85 198 1.2E-14 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3407 77df120bda7d6686ab4f1d417ba0e24e 408 Gene3D G3DSA:3.40.50.2000 21 204 5.6E-19 T 11-10-2018 dqs_3407 77df120bda7d6686ab4f1d417ba0e24e 408 SUPERFAMILY SSF53756 28 387 2.51E-67 T 11-10-2018 dqs_2582 b6d4c2d1d5726f1f5ca3eb1fc07d30c8 309 TIGRFAM TIGR03211 catechol_2_3: catechol 2,3 dioxygenase 5 308 3.8E-135 T 11-10-2018 IPR017624 Catechol 2,3 dioxygenase GO:0008198|GO:0018577|GO:0019439|GO:0055114 KEGG: 00361+1.13.11.2|KEGG: 00362+1.13.11.2|KEGG: 00622+1.13.11.2|KEGG: 00643+1.13.11.2|MetaCyc: PWY-5419|MetaCyc: PWY-5641 dqs_2582 b6d4c2d1d5726f1f5ca3eb1fc07d30c8 309 SUPERFAMILY SSF54593 1 288 6.22E-43 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2582 b6d4c2d1d5726f1f5ca3eb1fc07d30c8 309 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 246 267 - T 11-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 dqs_2582 b6d4c2d1d5726f1f5ca3eb1fc07d30c8 309 Gene3D G3DSA:3.10.180.10 1 150 8.7E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2582 b6d4c2d1d5726f1f5ca3eb1fc07d30c8 309 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 152 267 3.6E-17 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_2582 b6d4c2d1d5726f1f5ca3eb1fc07d30c8 309 Gene3D G3DSA:3.10.180.10 151 309 1.4E-40 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 142 723 5.2E-131 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 SUPERFAMILY SSF51445 180 729 6.6E-140 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 Gene3D G3DSA:3.20.20.80 1513 1623 2.0E-32 T 11-10-2018 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 Gene3D G3DSA:3.20.20.80 1054 1207 3.0E-34 T 11-10-2018 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 Gene3D G3DSA:1.10.10.470 1405 1512 1.6E-28 T 11-10-2018 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 Gene3D G3DSA:3.20.20.80 759 848 9.3E-19 T 11-10-2018 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 Pfam PF00128 Alpha amylase, catalytic domain 777 849 1.3E-13 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 Pfam PF02446 4-alpha-glucanotransferase 186 714 2.4E-119 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 SMART SM00642 760 1245 2.7E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 759 1698 6.0E-281 T 11-10-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 Gene3D G3DSA:3.30.1590.10 849 943 1.1E-20 T 11-10-2018 dqs_1948 91e54a7ad5ad8dc0bddef75bd31ac5ef 1734 SUPERFAMILY SSF51445 758 1614 3.8E-128 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_2913 8fb043283ecb005be112a6d73497332f 463 Gene3D G3DSA:3.40.120.10 252 369 8.9E-39 T 11-10-2018 dqs_2913 8fb043283ecb005be112a6d73497332f 463 SUPERFAMILY SSF55957 368 463 2.04E-20 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 361 1.7E-19 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 13 125 3.9E-33 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 Gene3D G3DSA:3.40.120.10 174 251 5.3E-35 T 11-10-2018 dqs_2913 8fb043283ecb005be112a6d73497332f 463 SUPERFAMILY SSF53738 260 357 3.53E-30 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 SUPERFAMILY SSF53738 12 144 1.18E-39 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 250 2.2E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 172 191 2.2E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 206 219 2.2E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 101 115 2.2E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 255 7.5E-29 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 Gene3D G3DSA:3.30.310.50 370 463 8.4E-26 T 11-10-2018 dqs_2913 8fb043283ecb005be112a6d73497332f 463 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 374 452 1.0E-11 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 SUPERFAMILY SSF53738 157 257 5.89E-33 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 dqs_2913 8fb043283ecb005be112a6d73497332f 463 Gene3D G3DSA:3.40.120.10 3 154 1.4E-52 T 11-10-2018 dqs_1446 2aa78393d54073e644e4b2c9e9c233a2 197 SUPERFAMILY SSF50494 1 194 1.1E-25 T 11-10-2018 IPR009003 Peptidase S1, PA clan dqs_1446 2aa78393d54073e644e4b2c9e9c233a2 197 PRINTS PR00839 V8 serine protease family signature 146 162 1.5E-5 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 dqs_1446 2aa78393d54073e644e4b2c9e9c233a2 197 PRINTS PR00839 V8 serine protease family signature 163 175 1.5E-5 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 dqs_1446 2aa78393d54073e644e4b2c9e9c233a2 197 PRINTS PR00839 V8 serine protease family signature 113 126 1.5E-5 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 dqs_1446 2aa78393d54073e644e4b2c9e9c233a2 197 PRINTS PR00839 V8 serine protease family signature 12 29 1.5E-5 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 dqs_1446 2aa78393d54073e644e4b2c9e9c233a2 197 Gene3D G3DSA:2.40.10.10 16 96 5.0E-6 T 11-10-2018 dqs_1446 2aa78393d54073e644e4b2c9e9c233a2 197 Gene3D G3DSA:2.40.10.10 103 196 1.3E-13 T 11-10-2018 dqs_1446 2aa78393d54073e644e4b2c9e9c233a2 197 Pfam PF13365 Trypsin-like peptidase domain 45 171 9.9E-17 T 11-10-2018 dqs_3159 0c3458989610332e2de13e0dc4062be1 179 SUPERFAMILY SSF103247 50 151 3.4E-9 T 11-10-2018 IPR035923 TT1751-like domain superfamily dqs_3159 0c3458989610332e2de13e0dc4062be1 179 Pfam PF03625 Domain of unknown function DUF302 96 143 1.6E-6 T 11-10-2018 IPR005180 Domain of unknown function DUF302 dqs_1542 93d8370057a8746d1d5fbe9ce9ca357f 361 SUPERFAMILY SSF160240 268 340 1.83E-7 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 dqs_1542 93d8370057a8746d1d5fbe9ce9ca357f 361 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 70 340 3.1E-77 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 dqs_1542 93d8370057a8746d1d5fbe9ce9ca357f 361 Gene3D G3DSA:1.20.1510.10 70 263 5.0E-36 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily dqs_1542 93d8370057a8746d1d5fbe9ce9ca357f 361 SUPERFAMILY SSF161111 66 264 3.53E-46 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily dqs_1542 93d8370057a8746d1d5fbe9ce9ca357f 361 Pfam PF01545 Cation efflux family 75 263 1.9E-39 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 SUPERFAMILY SSF53067 103 310 9.07E-41 T 11-10-2018 dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 SUPERFAMILY SSF53067 3 123 4.21E-28 T 11-10-2018 dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 2.1E-49 T 11-10-2018 IPR017861 Kae1/TsaD family dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 132 144 2.1E-49 T 11-10-2018 IPR017861 Kae1/TsaD family dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 77 97 2.1E-49 T 11-10-2018 IPR017861 Kae1/TsaD family dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 98 117 2.1E-49 T 11-10-2018 IPR017861 Kae1/TsaD family dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 264 273 2.1E-49 T 11-10-2018 IPR017861 Kae1/TsaD family dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 155 176 2.1E-49 T 11-10-2018 IPR017861 Kae1/TsaD family dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 307 7.1E-109 T 11-10-2018 IPR017861 Kae1/TsaD family dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 334 63.712 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 Gene3D G3DSA:3.30.420.40 130 294 3.8E-123 T 11-10-2018 dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 Gene3D G3DSA:3.30.420.40 3 316 3.8E-123 T 11-10-2018 dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 Pfam PF00814 Glycoprotease family 25 308 1.1E-97 T 11-10-2018 IPR000905 Gcp-like domain dqs_3361 c8cf72b154c082df591a2f7fdad8b149 343 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 314 5.6E-128 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 dqs_1565 805b821b450e0cd294ea0fee7a55065a 194 PIRSF PIRSF006102 1 193 6.1E-57 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 dqs_1565 805b821b450e0cd294ea0fee7a55065a 194 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 190 2.3E-81 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 dqs_1565 805b821b450e0cd294ea0fee7a55065a 194 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 25.197 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 dqs_1565 805b821b450e0cd294ea0fee7a55065a 194 Pfam PF02508 Rnf-Nqr subunit, membrane protein 7 190 4.9E-59 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 dqs_1934 0f5a7f2f52fa5ca8633008ebecd42f48 390 Pfam PF13692 Glycosyl transferases group 1 206 339 1.3E-23 T 11-10-2018 dqs_1934 0f5a7f2f52fa5ca8633008ebecd42f48 390 Gene3D G3DSA:3.40.50.2000 3 194 4.3E-28 T 11-10-2018 dqs_1934 0f5a7f2f52fa5ca8633008ebecd42f48 390 SUPERFAMILY SSF53756 7 372 2.28E-71 T 11-10-2018 dqs_1934 0f5a7f2f52fa5ca8633008ebecd42f48 390 Gene3D G3DSA:3.40.50.2000 195 359 2.9E-31 T 11-10-2018 dqs_1934 0f5a7f2f52fa5ca8633008ebecd42f48 390 Pfam PF13439 Glycosyltransferase Family 4 19 184 4.5E-24 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 589 618 5.9E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 560 587 5.9E-18 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 Pfam PF08495 FIST N domain 38 246 3.8E-22 T 11-10-2018 IPR013702 FIST domain, N-terminal dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 Pfam PF10442 FIST C domain 264 388 4.0E-12 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 SMART SM01204 262 391 1.4E-24 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 Gene3D G3DSA:1.10.287.950 433 672 7.3E-42 T 11-10-2018 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 SUPERFAMILY SSF58104 486 667 5.89E-44 T 11-10-2018 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 536 667 4.2E-33 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 SMART SM00283 469 675 1.2E-18 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3116 91ff426451a57bd4ec79a8d318700f9f 675 SMART SM00897 35 256 6.2E-48 T 11-10-2018 IPR013702 FIST domain, N-terminal dqs_2226 62377d395f55fbd78e2c65297931fce7 151 Pfam PF07963 Prokaryotic N-terminal methylation motif 21 40 6.8E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2226 62377d395f55fbd78e2c65297931fce7 151 SUPERFAMILY SSF54523 49 151 7.32E-38 T 11-10-2018 dqs_2226 62377d395f55fbd78e2c65297931fce7 151 PRINTS PR00813 Bacterial general secretion pathway protein G signature 58 76 1.9E-15 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 dqs_2226 62377d395f55fbd78e2c65297931fce7 151 PRINTS PR00813 Bacterial general secretion pathway protein G signature 22 47 1.9E-15 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 dqs_2226 62377d395f55fbd78e2c65297931fce7 151 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 21 151 3.7E-54 T 11-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 dqs_2226 62377d395f55fbd78e2c65297931fce7 151 Pfam PF08334 Type II secretion system (T2SS), protein G 46 151 5.1E-45 T 11-10-2018 IPR013545 Type II secretion system protein G dqs_2226 62377d395f55fbd78e2c65297931fce7 151 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 21 41 3.2E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2226 62377d395f55fbd78e2c65297931fce7 151 Gene3D G3DSA:3.30.700.10 46 151 1.1E-38 T 11-10-2018 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 SUPERFAMILY SSF54570 3 84 4.19E-35 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 90 1.6E-45 T 11-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 Gene3D G3DSA:3.30.860.10 1 91 8.4E-41 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 26.019 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 PIRSF PIRSF002144 1 91 4.0E-33 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.1E-23 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.1E-23 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.1E-23 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3552 56fa2160f96a134aa5afc42a30fb93f6 91 Pfam PF00203 Ribosomal protein S19 3 83 9.1E-37 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_1462 e1aa98a8e8f8a941bd9f1aa13dec4d78 474 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 200 255 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1462 e1aa98a8e8f8a941bd9f1aa13dec4d78 474 Gene3D G3DSA:1.20.210.10 1 468 5.7E-205 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1462 e1aa98a8e8f8a941bd9f1aa13dec4d78 474 SUPERFAMILY SSF81442 6 462 5.76E-126 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1462 e1aa98a8e8f8a941bd9f1aa13dec4d78 474 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 6 464 4.5E-235 T 11-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 dqs_1462 e1aa98a8e8f8a941bd9f1aa13dec4d78 474 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 10 440 1.5E-116 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 PRINTS PR01249 Ribosomal protein L31 signature 32 47 3.9E-23 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 PRINTS PR01249 Ribosomal protein L31 signature 2 19 3.9E-23 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 PRINTS PR01249 Ribosomal protein L31 signature 47 65 3.9E-23 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 Gene3D G3DSA:2.30.170.50 1 70 6.2E-34 T 11-10-2018 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 31.374 T 11-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 1.7E-35 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 SUPERFAMILY SSF143800 1 67 1.53E-27 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1644 a424e9adb92b59caa98488cc313b047e 72 Pfam PF01197 Ribosomal protein L31 1 66 6.9E-34 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 Gene3D G3DSA:1.20.1530.20 3 382 1.7E-81 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 Gene3D G3DSA:3.40.50.720 404 565 8.5E-34 T 11-10-2018 dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 SUPERFAMILY SSF116726 568 650 1.57E-14 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 SUPERFAMILY SSF51735 406 546 5.42E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 12 283 1.5E-72 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 Pfam PF02254 TrkA-N domain 409 522 7.7E-24 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 Gene3D G3DSA:3.30.70.1450 578 654 1.5E-13 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 Pfam PF00999 Sodium/hydrogen exchanger family 8 374 4.1E-64 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 dqs_0865 18e2b990cc4cc6f6ad78ca37e47f05c4 655 Pfam PF02080 TrkA-C domain 584 651 2.1E-12 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 dqs_3924 c90edb034acfdcdb1076abcf04a99996 392 Pfam PF00691 OmpA family 302 376 3.3E-5 T 11-10-2018 IPR006665 OmpA-like domain dqs_3924 c90edb034acfdcdb1076abcf04a99996 392 SUPERFAMILY SSF103088 275 386 1.7E-12 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_3924 c90edb034acfdcdb1076abcf04a99996 392 Gene3D G3DSA:1.25.40.10 202 280 2.1E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3924 c90edb034acfdcdb1076abcf04a99996 392 Gene3D G3DSA:3.30.1330.60 281 387 2.1E-9 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_3694 e21057e48a0311ee78b2a83ea01031c5 297 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 16 249 1.9E-92 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 dqs_3694 e21057e48a0311ee78b2a83ea01031c5 297 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 21 35 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 dqs_3694 e21057e48a0311ee78b2a83ea01031c5 297 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 96 129 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 dqs_3694 e21057e48a0311ee78b2a83ea01031c5 297 Gene3D G3DSA:3.40.1010.10 14 131 1.1E-46 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 dqs_3694 e21057e48a0311ee78b2a83ea01031c5 297 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 17 227 6.4E-52 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 dqs_3694 e21057e48a0311ee78b2a83ea01031c5 297 SUPERFAMILY SSF53790 12 258 1.7E-81 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 dqs_3694 e21057e48a0311ee78b2a83ea01031c5 297 Gene3D G3DSA:3.30.950.10 132 268 2.0E-48 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 dqs_3499 081753ee563e5707d157def9f8ba4d04 358 Gene3D G3DSA:1.20.120.1840 11 188 6.5E-46 T 11-10-2018 dqs_3499 081753ee563e5707d157def9f8ba4d04 358 SUPERFAMILY SSF100950 8 352 2.51E-102 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_3499 081753ee563e5707d157def9f8ba4d04 358 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 9 353 34.892 T 11-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 dqs_3499 081753ee563e5707d157def9f8ba4d04 358 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 17 344 3.0E-115 T 11-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 dqs_3499 081753ee563e5707d157def9f8ba4d04 358 Gene3D G3DSA:3.40.50.10470 189 352 9.7E-48 T 11-10-2018 dqs_3499 081753ee563e5707d157def9f8ba4d04 358 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 38 344 2.8E-85 T 11-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 dqs_3499 081753ee563e5707d157def9f8ba4d04 358 Pfam PF01008 Initiation factor 2 subunit family 77 344 3.1E-54 T 11-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 dqs_1352 4879fa3d5dbb3f6800cbb9286cae9c26 234 Gene3D G3DSA:3.40.50.200 8 229 1.1E-28 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 dqs_1352 4879fa3d5dbb3f6800cbb9286cae9c26 234 SUPERFAMILY SSF52743 12 222 8.77E-27 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 Gene3D G3DSA:3.40.190.10 105 261 1.9E-47 T 11-10-2018 dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 Gene3D G3DSA:3.40.190.10 165 260 1.9E-47 T 11-10-2018 dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 2.9E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 SUPERFAMILY SSF53850 97 314 3.98E-31 T 11-10-2018 dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 SUPERFAMILY SSF46785 8 87 1.11E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 Pfam PF03466 LysR substrate binding domain 96 312 4.9E-29 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0343 aff9df4a831ddcbdd179823c3aa43192 331 Gene3D G3DSA:1.10.10.10 9 98 2.4E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Gene3D G3DSA:3.40.50.620 4 200 3.4E-61 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 PRINTS PR00986 Valyl-tRNA synthetase signature 513 534 8.7E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 8.7E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 PRINTS PR00986 Valyl-tRNA synthetase signature 549 567 8.7E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 PRINTS PR00986 Valyl-tRNA synthetase signature 38 49 8.7E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 PRINTS PR00986 Valyl-tRNA synthetase signature 367 380 8.7E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 931 995 2.8E-21 T 11-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Gene3D G3DSA:3.90.740.10 211 348 1.8E-32 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Gene3D G3DSA:1.10.287.380 924 996 8.3E-17 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 16 674 6.1E-198 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 SUPERFAMILY SSF47323 685 946 2.24E-64 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Pfam PF08264 Anticodon-binding domain of tRNA 726 876 8.7E-42 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 SUPERFAMILY SSF46589 931 995 4.81E-17 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 TIGRFAM TIGR00422 valS: valine--tRNA ligase 4 977 0.0 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 SUPERFAMILY SSF50677 193 363 2.49E-55 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Gene3D G3DSA:3.40.50.620 349 631 1.8E-65 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 56 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 SUPERFAMILY SSF52374 3 684 4.35E-133 T 11-10-2018 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Gene3D G3DSA:1.10.730.10 632 870 8.5E-71 T 11-10-2018 dqs_3047 1dca66bb69fc988d555ef3e5525323e1 998 Hamap MF_02004 Valine--tRNA ligase [valS]. 3 996 15.774 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 dqs_3310 16308a754a7127df64c74088f3127a02 259 Gene3D G3DSA:3.40.630.30 18 229 7.2E-48 T 11-10-2018 dqs_3310 16308a754a7127df64c74088f3127a02 259 Pfam PF13444 Acetyltransferase (GNAT) domain 34 138 5.8E-20 T 11-10-2018 dqs_3310 16308a754a7127df64c74088f3127a02 259 TIGRFAM TIGR03694 exosort_acyl: N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated 12 242 1.8E-82 T 11-10-2018 IPR022484 PEP-CTERM/exosortase system-associated acyltransferase, predicted dqs_3310 16308a754a7127df64c74088f3127a02 259 SUPERFAMILY SSF55729 15 217 1.2E-35 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_2413 3b71ce7e2792db1f01928d25909dea8f 178 Pfam PF00258 Flavodoxin 6 167 4.4E-27 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 dqs_2413 3b71ce7e2792db1f01928d25909dea8f 178 PIRSF PIRSF038996 1 177 2.5E-62 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 dqs_2413 3b71ce7e2792db1f01928d25909dea8f 178 TIGRFAM TIGR01752 flav_long: flavodoxin 3 175 6.8E-64 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 dqs_2413 3b71ce7e2792db1f01928d25909dea8f 178 Gene3D G3DSA:3.40.50.360 1 176 1.4E-49 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_2413 3b71ce7e2792db1f01928d25909dea8f 178 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 dqs_2413 3b71ce7e2792db1f01928d25909dea8f 178 SUPERFAMILY SSF52218 1 175 1.19E-45 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_2379 095dadb3819d3783cbd90020456e0a13 463 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 51 463 7.9E-156 T 11-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 dqs_2379 095dadb3819d3783cbd90020456e0a13 463 SUPERFAMILY SSF51735 139 268 1.73E-11 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2379 095dadb3819d3783cbd90020456e0a13 463 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 48 462 7.0E-138 T 11-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase dqs_2379 095dadb3819d3783cbd90020456e0a13 463 Pfam PF13727 CoA-binding domain 71 237 3.0E-30 T 11-10-2018 dqs_2379 095dadb3819d3783cbd90020456e0a13 463 Pfam PF02397 Bacterial sugar transferase 273 457 1.6E-63 T 11-10-2018 IPR003362 Bacterial sugar transferase dqs_2379 095dadb3819d3783cbd90020456e0a13 463 Gene3D G3DSA:3.40.50.720 138 253 5.0E-18 T 11-10-2018 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 SUPERFAMILY SSF54427 304 410 1.69E-18 T 11-10-2018 IPR032710 NTF2-like domain superfamily dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 Pfam PF13181 Tetratricopeptide repeat 95 121 0.0011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 SUPERFAMILY SSF48452 34 153 1.66E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 SMART SM00028 93 126 1.2E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 SMART SM00028 127 155 350.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 SMART SM00028 59 92 76.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 Gene3D G3DSA:3.10.450.50 301 414 1.7E-12 T 11-10-2018 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 Pfam PF14534 Domain of unknown function (DUF4440) 311 408 6.2E-8 T 11-10-2018 IPR027843 Domain of unknown function DUF4440 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 Pfam PF13432 Tetratricopeptide repeat 33 90 2.0E-9 T 11-10-2018 dqs_1167 52d277cddf6da6d62a8c0c2c9956c5a5 415 Gene3D G3DSA:1.25.40.10 14 172 3.5E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1303 63c22cc68ba0ffcd4c13c1868bbdc817 88 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 5 84 3.0E-35 T 11-10-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 dqs_1303 63c22cc68ba0ffcd4c13c1868bbdc817 88 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 22 83 2.0E-13 T 11-10-2018 IPR008792 Coenzyme PQQ synthesis D dqs_1303 63c22cc68ba0ffcd4c13c1868bbdc817 88 Gene3D G3DSA:1.10.10.1150 1 84 4.5E-24 T 11-10-2018 dqs_0445 461103ac0175b12c526898274617d178 313 Gene3D G3DSA:3.40.190.10 167 267 3.8E-98 T 11-10-2018 dqs_0445 461103ac0175b12c526898274617d178 313 Pfam PF03466 LysR substrate binding domain 89 294 1.7E-42 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0445 461103ac0175b12c526898274617d178 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 2.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0445 461103ac0175b12c526898274617d178 313 SUPERFAMILY SSF53850 90 300 2.5E-41 T 11-10-2018 dqs_0445 461103ac0175b12c526898274617d178 313 Gene3D G3DSA:1.10.10.10 1 85 2.9E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0445 461103ac0175b12c526898274617d178 313 SUPERFAMILY SSF46785 1 113 7.14E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0445 461103ac0175b12c526898274617d178 313 Gene3D G3DSA:3.40.190.10 93 303 3.8E-98 T 11-10-2018 dqs_0445 461103ac0175b12c526898274617d178 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0445 461103ac0175b12c526898274617d178 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0445 461103ac0175b12c526898274617d178 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0045 400e9f3beebf82fe5c2251e3a28648c5 451 Pfam PF07044 Protein of unknown function (DUF1329) 85 446 4.5E-142 T 11-10-2018 IPR010752 Protein of unknown function DUF1329 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 SUPERFAMILY SSF81342 18 233 1.02E-40 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 25 48 3.3E-54 T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 63 87 3.3E-54 T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 142 161 3.3E-54 T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 190 212 3.3E-54 T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 221 234 3.3E-54 T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 Pfam PF01292 Prokaryotic cytochrome b561 23 229 1.2E-28 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 Gene3D G3DSA:1.20.950.20 11 219 8.0E-74 T 11-10-2018 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 21 234 7.3E-72 T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 dqs_3940 c5f94feb709ee3d041e55305e2a1448f 235 ProSitePatterns PS00882 Nickel-dependent hydrogenases b-type cytochrome subunit signature 1. 28 45 - T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 dqs_2498 c2f7eccf636261916b397a4379babad9 331 SUPERFAMILY SSF51735 2 308 7.72E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2498 c2f7eccf636261916b397a4379babad9 331 Pfam PF13460 NAD(P)H-binding 6 102 2.5E-12 T 11-10-2018 IPR016040 NAD(P)-binding domain dqs_2498 c2f7eccf636261916b397a4379babad9 331 Gene3D G3DSA:3.40.50.720 2 311 4.5E-33 T 11-10-2018 dqs_3730 a6b00f1970374853b6a67c8a9283e344 361 Gene3D G3DSA:3.40.50.720 5 326 1.5E-168 T 11-10-2018 dqs_3730 a6b00f1970374853b6a67c8a9283e344 361 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 335 5.5E-161 T 11-10-2018 IPR016040 NAD(P)-binding domain dqs_3730 a6b00f1970374853b6a67c8a9283e344 361 Gene3D G3DSA:3.90.25.10 193 340 1.5E-168 T 11-10-2018 dqs_3730 a6b00f1970374853b6a67c8a9283e344 361 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 342 1.4E-182 T 11-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 dqs_3730 a6b00f1970374853b6a67c8a9283e344 361 SUPERFAMILY SSF51735 3 341 3.05E-86 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3730 a6b00f1970374853b6a67c8a9283e344 361 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 345 57.098 T 11-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 dqs_1958 a1b02b35a07e1da3c0313d3a0771b55a 419 Gene3D G3DSA:3.40.50.2000 196 384 1.9E-129 T 11-10-2018 dqs_1958 a1b02b35a07e1da3c0313d3a0771b55a 419 Pfam PF13439 Glycosyltransferase Family 4 22 199 1.6E-32 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_1958 a1b02b35a07e1da3c0313d3a0771b55a 419 Gene3D G3DSA:3.40.50.2000 5 401 1.9E-129 T 11-10-2018 dqs_1958 a1b02b35a07e1da3c0313d3a0771b55a 419 Pfam PF00534 Glycosyl transferases group 1 208 382 1.9E-39 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_1958 a1b02b35a07e1da3c0313d3a0771b55a 419 SUPERFAMILY SSF53756 20 403 4.71E-93 T 11-10-2018 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 Gene3D G3DSA:1.20.1330.10 45 451 5.9E-143 T 11-10-2018 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 Gene3D G3DSA:2.170.280.10 178 399 5.9E-143 T 11-10-2018 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 Pfam PF07196 Flagellin hook IN motif 211 254 5.4E-5 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 143 2.3E-45 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 Gene3D G3DSA:1.20.58.1830 5 491 5.9E-143 T 11-10-2018 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 Gene3D G3DSA:2.30.220.10 190 285 5.9E-143 T 11-10-2018 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 PRINTS PR00207 Flagellin signature 37 54 6.6E-25 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 PRINTS PR00207 Flagellin signature 76 95 6.6E-25 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 PRINTS PR00207 Flagellin signature 111 134 6.6E-25 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 SUPERFAMILY SSF64518 1 492 7.45E-103 T 11-10-2018 dqs_2828 7e211f88ed4045e3ec94c18db157e270 493 Pfam PF00700 Bacterial flagellin C-terminal helical region 407 491 5.1E-26 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 dqs_0498 091b34fb7d3af61594d5173e09efbd75 390 SUPERFAMILY SSF53335 20 382 1.33E-91 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0498 091b34fb7d3af61594d5173e09efbd75 390 Gene3D G3DSA:3.40.50.12710 3 390 1.3E-127 T 11-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 dqs_0498 091b34fb7d3af61594d5173e09efbd75 390 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 75 318 5.9E-48 T 11-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 dqs_3203 130fc6e1829bcc7f65dd295147cb0f7e 262 Gene3D G3DSA:3.90.226.10 2 201 4.4E-62 T 11-10-2018 dqs_3203 130fc6e1829bcc7f65dd295147cb0f7e 262 SUPERFAMILY SSF52096 1 258 2.65E-75 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_3203 130fc6e1829bcc7f65dd295147cb0f7e 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 258 7.5E-53 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_3203 130fc6e1829bcc7f65dd295147cb0f7e 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 102 122 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 dqs_3203 130fc6e1829bcc7f65dd295147cb0f7e 262 Gene3D G3DSA:1.10.12.10 203 261 9.2E-18 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_2439 971d6e8a34c11157b6f6299b74ce591d 370 Gene3D G3DSA:1.10.10.10 30 113 6.1E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2439 971d6e8a34c11157b6f6299b74ce591d 370 SUPERFAMILY SSF53335 118 360 5.42E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2439 971d6e8a34c11157b6f6299b74ce591d 370 Gene3D G3DSA:3.40.50.150 114 368 2.7E-60 T 11-10-2018 dqs_2439 971d6e8a34c11157b6f6299b74ce591d 370 PIRSF PIRSF005739 27 368 3.5E-43 T 11-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 dqs_2439 971d6e8a34c11157b6f6299b74ce591d 370 Pfam PF00891 O-methyltransferase 127 349 4.7E-33 T 11-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 dqs_2439 971d6e8a34c11157b6f6299b74ce591d 370 SUPERFAMILY SSF46785 28 118 4.4E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2439 971d6e8a34c11157b6f6299b74ce591d 370 Pfam PF16864 Dimerisation domain 37 114 1.3E-8 T 11-10-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain dqs_3851 61c00c12b02622e1817faaaec7fd207f 355 Gene3D G3DSA:3.40.50.150 149 346 3.0E-29 T 11-10-2018 dqs_3851 61c00c12b02622e1817faaaec7fd207f 355 SUPERFAMILY SSF53335 135 340 1.15E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3851 61c00c12b02622e1817faaaec7fd207f 355 Gene3D G3DSA:1.10.10.10 25 93 3.6E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3851 61c00c12b02622e1817faaaec7fd207f 355 SUPERFAMILY SSF46785 31 96 1.63E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3851 61c00c12b02622e1817faaaec7fd207f 355 Pfam PF13847 Methyltransferase domain 174 305 7.8E-18 T 11-10-2018 IPR025714 Methyltransferase domain dqs_0701 e27ef4813c61e640b8fc9c375f76d8b2 616 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 45.41 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 dqs_0701 e27ef4813c61e640b8fc9c375f76d8b2 616 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 dqs_0701 e27ef4813c61e640b8fc9c375f76d8b2 616 SUPERFAMILY SSF143975 4 420 4.05E-136 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 dqs_0701 e27ef4813c61e640b8fc9c375f76d8b2 616 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 dqs_0701 e27ef4813c61e640b8fc9c375f76d8b2 616 SUPERFAMILY SSF52016 421 612 3.3E-61 T 11-10-2018 dqs_0701 e27ef4813c61e640b8fc9c375f76d8b2 616 Gene3D G3DSA:3.50.30.80 421 572 1.4E-55 T 11-10-2018 dqs_0701 e27ef4813c61e640b8fc9c375f76d8b2 616 Pfam PF00920 Dehydratase family 34 607 6.0E-223 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 dqs_0701 e27ef4813c61e640b8fc9c375f76d8b2 616 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 2.6E-257 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 dqs_0300 848ada89611588bcd603aac8b9fe9b22 140 SUPERFAMILY SSF88723 2 135 1.15E-17 T 11-10-2018 IPR029060 PIN-like domain superfamily dqs_0300 848ada89611588bcd603aac8b9fe9b22 140 Pfam PF01850 PIN domain 2 129 4.7E-12 T 11-10-2018 IPR002716 PIN domain dqs_0300 848ada89611588bcd603aac8b9fe9b22 140 Gene3D G3DSA:3.40.50.1010 1 129 1.6E-16 T 11-10-2018 dqs_2142 46d38d866200768c848ffd72d022d7cf 419 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 72 135 4.4E-8 T 11-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal dqs_2142 46d38d866200768c848ffd72d022d7cf 419 Gene3D G3DSA:3.40.50.720 165 414 5.5E-35 T 11-10-2018 dqs_2142 46d38d866200768c848ffd72d022d7cf 419 SUPERFAMILY SSF50249 35 137 1.15E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_2142 46d38d866200768c848ffd72d022d7cf 419 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2142 46d38d866200768c848ffd72d022d7cf 419 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 257 2.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2142 46d38d866200768c848ffd72d022d7cf 419 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 347 364 2.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2142 46d38d866200768c848ffd72d022d7cf 419 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 326 345 2.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2142 46d38d866200768c848ffd72d022d7cf 419 SUPERFAMILY SSF51735 173 388 7.44E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2142 46d38d866200768c848ffd72d022d7cf 419 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 37 68 2.9E-10 T 11-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal dqs_2142 46d38d866200768c848ffd72d022d7cf 419 Pfam PF00106 short chain dehydrogenase 174 361 1.7E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1172 5ea56507ebc585f970a50bcc68166299 188 ProSitePatterns PS01071 grpE protein signature. 140 182 - T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 Gene3D G3DSA:2.30.22.10 129 184 1.1E-21 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 PRINTS PR00773 GrpE protein signature 137 152 1.2E-24 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 PRINTS PR00773 GrpE protein signature 85 100 1.2E-24 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 PRINTS PR00773 GrpE protein signature 163 182 1.2E-24 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 PRINTS PR00773 GrpE protein signature 57 73 1.2E-24 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 Gene3D G3DSA:3.90.20.20 21 127 3.7E-24 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 SUPERFAMILY SSF58014 36 129 3.79E-24 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 Hamap MF_01151 Protein GrpE [grpE]. 3 184 19.402 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 Pfam PF01025 GrpE 29 184 2.1E-45 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 dqs_1172 5ea56507ebc585f970a50bcc68166299 188 SUPERFAMILY SSF51064 132 185 4.97E-17 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 dqs_0981 162dfbd7bc608ac52c98a468a4001a37 283 Gene3D G3DSA:1.10.10.10 1 72 2.9E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0981 162dfbd7bc608ac52c98a468a4001a37 283 SUPERFAMILY SSF46785 2 66 1.32E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0981 162dfbd7bc608ac52c98a468a4001a37 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 44 3.1E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0981 162dfbd7bc608ac52c98a468a4001a37 283 Gene3D G3DSA:3.40.190.10 149 241 3.1E-7 T 11-10-2018 dqs_0981 162dfbd7bc608ac52c98a468a4001a37 283 Pfam PF03466 LysR substrate binding domain 102 268 1.2E-14 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0981 162dfbd7bc608ac52c98a468a4001a37 283 SUPERFAMILY SSF53850 71 269 1.16E-24 T 11-10-2018 dqs_0981 162dfbd7bc608ac52c98a468a4001a37 283 Gene3D G3DSA:3.40.190.10 102 148 3.1E-7 T 11-10-2018 dqs_0741 f4533dbd219f7fed2ee496f3b7461733 100 Pfam PF03927 NapD protein 7 81 3.3E-24 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly dqs_0741 f4533dbd219f7fed2ee496f3b7461733 100 Gene3D G3DSA:3.30.70.920 7 76 9.0E-16 T 11-10-2018 dqs_0741 f4533dbd219f7fed2ee496f3b7461733 100 Hamap MF_02200 Chaperone NapD [napD]. 7 83 15.929 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly dqs_1761 6f0e90517b6d100ab7b870c8c5cd66e1 338 Gene3D G3DSA:3.40.190.10 93 293 2.9E-49 T 11-10-2018 dqs_1761 6f0e90517b6d100ab7b870c8c5cd66e1 338 SUPERFAMILY SSF46785 3 112 1.9E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1761 6f0e90517b6d100ab7b870c8c5cd66e1 338 SUPERFAMILY SSF53850 92 301 4.52E-36 T 11-10-2018 dqs_1761 6f0e90517b6d100ab7b870c8c5cd66e1 338 Gene3D G3DSA:1.10.10.10 2 86 2.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1761 6f0e90517b6d100ab7b870c8c5cd66e1 338 Gene3D G3DSA:3.40.190.10 165 268 2.9E-49 T 11-10-2018 dqs_1761 6f0e90517b6d100ab7b870c8c5cd66e1 338 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.1E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1761 6f0e90517b6d100ab7b870c8c5cd66e1 338 Pfam PF03466 LysR substrate binding domain 92 296 1.2E-34 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1650 cbba641880290337ebfd6ec98c8cf64c 291 SUPERFAMILY SSF54197 45 158 3.06E-20 T 11-10-2018 IPR036265 HIT-like superfamily dqs_1650 cbba641880290337ebfd6ec98c8cf64c 291 PIRSF PIRSF000846 8 291 1.2E-80 T 11-10-2018 IPR009163 ATP adenylyltransferase GO:0003877|GO:0005524|GO:0009117 KEGG: 00230+2.7.7.53|KEGG: 00920+2.7.7.5|MetaCyc: PWY-5279 dqs_1650 cbba641880290337ebfd6ec98c8cf64c 291 Pfam PF09830 ATP adenylyltransferase 229 287 4.0E-19 T 11-10-2018 IPR019200 ATP adenylyltransferase, C-terminal GO:0003877 KEGG: 00230+2.7.7.53|KEGG: 00920+2.7.7.5|MetaCyc: PWY-5279 dqs_1650 cbba641880290337ebfd6ec98c8cf64c 291 Gene3D G3DSA:3.30.428.70 5 289 1.8E-65 T 11-10-2018 dqs_2675 896d26924098db60e598c606dd1776cc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2675 896d26924098db60e598c606dd1776cc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2675 896d26924098db60e598c606dd1776cc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2675 896d26924098db60e598c606dd1776cc 313 Gene3D G3DSA:3.40.190.10 171 269 7.6E-78 T 11-10-2018 dqs_2675 896d26924098db60e598c606dd1776cc 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.6E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2675 896d26924098db60e598c606dd1776cc 313 Gene3D G3DSA:3.40.190.10 92 293 7.6E-78 T 11-10-2018 dqs_2675 896d26924098db60e598c606dd1776cc 313 SUPERFAMILY SSF46785 3 85 7.44E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2675 896d26924098db60e598c606dd1776cc 313 SUPERFAMILY SSF53850 90 296 4.54E-47 T 11-10-2018 dqs_2675 896d26924098db60e598c606dd1776cc 313 Gene3D G3DSA:1.10.10.10 1 88 3.6E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2675 896d26924098db60e598c606dd1776cc 313 Pfam PF03466 LysR substrate binding domain 95 298 1.9E-29 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 SUPERFAMILY SSF53850 90 290 1.21E-31 T 11-10-2018 dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 Pfam PF03466 LysR substrate binding domain 88 287 9.8E-32 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 Gene3D G3DSA:1.10.10.10 5 94 3.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 6.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 6.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 6.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 Gene3D G3DSA:3.40.190.10 100 283 5.9E-42 T 11-10-2018 dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 Gene3D G3DSA:3.40.190.10 160 257 5.9E-42 T 11-10-2018 dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 SUPERFAMILY SSF46785 2 83 8.25E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0141 bf253cd10b6491842dbc9f09eb7cfbd8 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 6.5E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0515 540addecb5e87fd151798275bb9dc840 240 Gene3D G3DSA:3.40.50.300 2 240 1.4E-70 T 11-10-2018 dqs_0515 540addecb5e87fd151798275bb9dc840 240 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 213 235 4.9E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_0515 540addecb5e87fd151798275bb9dc840 240 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 240 8.9E-116 T 11-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 dqs_0515 540addecb5e87fd151798275bb9dc840 240 SUPERFAMILY SSF52540 3 236 1.81E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0515 540addecb5e87fd151798275bb9dc840 240 Pfam PF00005 ABC transporter 20 165 1.0E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0515 540addecb5e87fd151798275bb9dc840 240 SMART SM00382 28 221 8.9E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3444 c07be9fe14d78766c0f176063e10fec6 534 Pfam PF02690 Na+/Pi-cotransporter 1 136 3.6E-38 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 dqs_3444 c07be9fe14d78766c0f176063e10fec6 534 Pfam PF02690 Na+/Pi-cotransporter 161 235 3.6E-11 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 dqs_0567 58e122b36973590ee91e41870586f795 71 PIRSF PIRSF037676 1 70 9.9E-21 T 11-10-2018 IPR007774 Putative nitrogen fixation protein dqs_0567 58e122b36973590ee91e41870586f795 71 Pfam PF05082 Rop-like 4 67 8.9E-27 T 11-10-2018 IPR007774 Putative nitrogen fixation protein dqs_0567 58e122b36973590ee91e41870586f795 71 Gene3D G3DSA:1.10.287.660 2 69 1.5E-12 T 11-10-2018 IPR029012 Helix hairpin bin domain superfamily dqs_1217 0cfd213511c4bf2b6a134de4497fa032 260 Gene3D G3DSA:3.40.50.300 30 251 3.3E-13 T 11-10-2018 dqs_1217 0cfd213511c4bf2b6a134de4497fa032 260 SUPERFAMILY SSF52540 34 243 1.95E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3778 57acb20a2445fb371d3ff69456400ac9 282 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 126 222 7.1E-6 T 11-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 dqs_3691 760040d8a3ca3588e20a03cbc3e5ba22 275 PIRSF PIRSF028477 1 257 4.7E-66 T 11-10-2018 IPR014547 Uncharacterised conserved protein UCP028477 dqs_3691 760040d8a3ca3588e20a03cbc3e5ba22 275 Pfam PF09916 Uncharacterized protein conserved in bacteria (DUF2145) 47 247 2.9E-74 T 11-10-2018 IPR014547 Uncharacterised conserved protein UCP028477 dqs_2702 ed922e6956f8307a3789438eafc59c64 413 Pfam PF07690 Major Facilitator Superfamily 11 348 3.8E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_2702 ed922e6956f8307a3789438eafc59c64 413 SUPERFAMILY SSF103473 5 389 4.05E-52 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2702 ed922e6956f8307a3789438eafc59c64 413 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 6 380 4.3E-66 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 dqs_2702 ed922e6956f8307a3789438eafc59c64 413 Gene3D G3DSA:1.20.1720.10 6 387 7.1E-84 T 11-10-2018 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 Pfam PF01479 S4 domain 32 76 6.1E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 Pfam PF00849 RNA pseudouridylate synthase 107 256 1.7E-32 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 SUPERFAMILY SSF55174 31 83 2.52E-7 T 11-10-2018 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 149 163 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 Gene3D G3DSA:3.30.2350.10 99 320 2.3E-74 T 11-10-2018 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 Gene3D G3DSA:3.10.290.10 21 81 5.1E-16 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 28 317 5.4E-93 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 SMART SM00363 31 90 2.8E-6 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_1120 af6fbff29ad9f90d7b93fb1df6f3c029 324 SUPERFAMILY SSF55120 92 319 6.99E-78 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1628 e9ad7a86e6a756d38b20346b78cf0b54 563 Gene3D G3DSA:2.40.50.460 449 563 7.3E-9 T 11-10-2018 dqs_1628 e9ad7a86e6a756d38b20346b78cf0b54 563 Gene3D G3DSA:3.90.1640.30 49 323 2.6E-85 T 11-10-2018 dqs_1628 e9ad7a86e6a756d38b20346b78cf0b54 563 Pfam PF01368 DHH family 75 176 1.7E-8 T 11-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 dqs_1628 e9ad7a86e6a756d38b20346b78cf0b54 563 Pfam PF02272 DHHA1 domain 319 447 6.3E-23 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 dqs_1628 e9ad7a86e6a756d38b20346b78cf0b54 563 Gene3D G3DSA:3.10.310.30 324 448 7.4E-31 T 11-10-2018 dqs_1628 e9ad7a86e6a756d38b20346b78cf0b54 563 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 23 559 2.4E-140 T 11-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 dqs_1628 e9ad7a86e6a756d38b20346b78cf0b54 563 SUPERFAMILY SSF64182 48 460 7.46E-116 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily dqs_2888 44761e331562add1e161e03ea3c290cf 120 SUPERFAMILY SSF52091 4 113 1.26E-32 T 11-10-2018 IPR036513 STAS domain superfamily dqs_2888 44761e331562add1e161e03ea3c290cf 120 Gene3D G3DSA:3.40.50.10600 1 113 2.5E-30 T 11-10-2018 IPR038396 SpoIIAA-like superfamily dqs_2888 44761e331562add1e161e03ea3c290cf 120 Pfam PF11964 SpoIIAA-like 11 112 2.9E-20 T 11-10-2018 IPR021866 SpoIIAA-like dqs_1845 c184bbdf70752d2ce8177b5880476451 550 SUPERFAMILY SSF56801 17 545 4.84E-146 T 11-10-2018 dqs_1845 c184bbdf70752d2ce8177b5880476451 550 Pfam PF13193 AMP-binding enzyme C-terminal domain 459 533 2.2E-21 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_1845 c184bbdf70752d2ce8177b5880476451 550 Pfam PF00501 AMP-binding enzyme 30 450 1.1E-97 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_1845 c184bbdf70752d2ce8177b5880476451 550 Gene3D G3DSA:3.40.50.12780 11 445 2.1E-105 T 11-10-2018 dqs_1845 c184bbdf70752d2ce8177b5880476451 550 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_1845 c184bbdf70752d2ce8177b5880476451 550 Gene3D G3DSA:3.30.300.310 446 548 3.5E-35 T 11-10-2018 dqs_2668 e04f92180627e7a0320a7efd74dba43f 808 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 174 804 7.0E-92 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 dqs_2668 e04f92180627e7a0320a7efd74dba43f 808 Pfam PF00593 TonB dependent receptor 376 807 2.3E-35 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_2668 e04f92180627e7a0320a7efd74dba43f 808 Gene3D G3DSA:3.55.50.30 54 126 1.3E-21 T 11-10-2018 dqs_2668 e04f92180627e7a0320a7efd74dba43f 808 Pfam PF07715 TonB-dependent Receptor Plug Domain 172 272 4.1E-14 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_2668 e04f92180627e7a0320a7efd74dba43f 808 SUPERFAMILY SSF56935 134 808 7.79E-111 T 11-10-2018 dqs_2668 e04f92180627e7a0320a7efd74dba43f 808 Gene3D G3DSA:2.170.130.10 149 279 8.1E-35 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_2668 e04f92180627e7a0320a7efd74dba43f 808 SMART SM00965 76 127 2.6E-8 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 dqs_2668 e04f92180627e7a0320a7efd74dba43f 808 Gene3D G3DSA:2.40.170.20 280 808 1.3E-137 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_1363 b00d6cf760edbe87baddc0881f5ed5aa 247 SUPERFAMILY SSF53146 107 225 1.44E-29 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_1363 b00d6cf760edbe87baddc0881f5ed5aa 247 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 120 212 2.2E-15 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis dqs_1363 b00d6cf760edbe87baddc0881f5ed5aa 247 Pfam PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal 8 95 7.3E-32 T 11-10-2018 IPR031763 Dinitrogenase iron-molybdenum cofactor, N-terminal dqs_1363 b00d6cf760edbe87baddc0881f5ed5aa 247 Gene3D G3DSA:3.30.420.130 107 226 3.8E-28 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_1363 b00d6cf760edbe87baddc0881f5ed5aa 247 Gene3D G3DSA:1.10.150.590 1 100 7.0E-32 T 11-10-2018 IPR038127 NafY, N-terminal domain superfamily dqs_0162 5cf210d5762473720a3843a9b8c7a820 282 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 35 277 2.3E-40 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0162 5cf210d5762473720a3843a9b8c7a820 282 ProSitePatterns PS00449 ATP synthase a subunit signature. 211 220 - T 11-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0162 5cf210d5762473720a3843a9b8c7a820 282 SUPERFAMILY SSF81336 94 276 1.01E-39 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0162 5cf210d5762473720a3843a9b8c7a820 282 Gene3D G3DSA:1.20.120.220 92 282 9.4E-53 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0162 5cf210d5762473720a3843a9b8c7a820 282 Hamap MF_01393 ATP synthase subunit a [atpB]. 31 282 13.975 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0162 5cf210d5762473720a3843a9b8c7a820 282 Pfam PF00119 ATP synthase A chain 41 275 1.6E-55 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_1241 79f94d3c36a539b0ef593b83289fa7f6 161 Pfam PF03737 Aldolase/RraA 7 155 8.6E-45 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein dqs_1241 79f94d3c36a539b0ef593b83289fa7f6 161 Gene3D G3DSA:3.50.30.40 3 161 5.0E-67 T 11-10-2018 dqs_1241 79f94d3c36a539b0ef593b83289fa7f6 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 7 156 4.6E-67 T 11-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 dqs_1241 79f94d3c36a539b0ef593b83289fa7f6 161 SUPERFAMILY SSF89562 5 159 6.15E-50 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 SUPERFAMILY SSF52317 1 188 2.65E-59 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 1.1E-84 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 7.5E-7 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 7.5E-7 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.4E-13 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 1.4E-13 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 1.4E-13 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.2E-36 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.2E-36 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.2E-36 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.2E-36 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00097 Anthranilate synthase component II signature 164 177 1.2E-36 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.2E-36 T 11-10-2018 dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 Gene3D G3DSA:3.40.50.880 1 189 1.1E-64 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3462 278b5684b3efa78f3424e6c1d5a12385 195 Pfam PF00117 Glutamine amidotransferase class-I 4 185 2.3E-57 T 11-10-2018 IPR017926 Glutamine amidotransferase dqs_1034 9f3bad6e6432b7f25c5a3b4090f08fd3 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 151 163 8.1E-6 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 dqs_1034 9f3bad6e6432b7f25c5a3b4090f08fd3 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 8.1E-6 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 dqs_1034 9f3bad6e6432b7f25c5a3b4090f08fd3 197 SUPERFAMILY SSF50022 30 191 2.02E-42 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1034 9f3bad6e6432b7f25c5a3b4090f08fd3 197 Gene3D G3DSA:2.102.10.10 43 192 2.1E-49 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1034 9f3bad6e6432b7f25c5a3b4090f08fd3 197 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 1 40 9.6E-9 T 11-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 dqs_1034 9f3bad6e6432b7f25c5a3b4090f08fd3 197 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 11 192 4.5E-67 T 11-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 dqs_1034 9f3bad6e6432b7f25c5a3b4090f08fd3 197 Pfam PF00355 Rieske [2Fe-2S] domain 56 180 3.7E-11 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_2424 2a505b069133280d5c4b9bf65fe813d3 120 Pfam PF04993 TfoX N-terminal domain 10 102 4.2E-32 T 11-10-2018 IPR007076 TfoX, N-terminal dqs_2424 2a505b069133280d5c4b9bf65fe813d3 120 SUPERFAMILY SSF159894 3 103 3.66E-32 T 11-10-2018 dqs_2424 2a505b069133280d5c4b9bf65fe813d3 120 Gene3D G3DSA:3.30.1460.30 2 103 1.8E-34 T 11-10-2018 dqs_3817 9b6a425f69f7909f001519dc01325462 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 220 9.0E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_3817 9b6a425f69f7909f001519dc01325462 226 Gene3D G3DSA:1.10.10.10 130 225 2.7E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3817 9b6a425f69f7909f001519dc01325462 226 Pfam PF00072 Response regulator receiver domain 4 118 1.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3817 9b6a425f69f7909f001519dc01325462 226 SMART SM00448 1 118 2.2E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3817 9b6a425f69f7909f001519dc01325462 226 SMART SM00862 151 222 1.6E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_3817 9b6a425f69f7909f001519dc01325462 226 Gene3D G3DSA:3.40.50.2300 1 127 2.8E-38 T 11-10-2018 dqs_3817 9b6a425f69f7909f001519dc01325462 226 SUPERFAMILY SSF52172 1 172 3.98E-37 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1940 b440f18c65abc5e489882722e5eaee82 223 Gene3D G3DSA:1.20.1260.10 67 217 2.6E-7 T 11-10-2018 IPR012347 Ferritin-like dqs_1940 b440f18c65abc5e489882722e5eaee82 223 Pfam PF13628 Domain of unknown function (DUF4142) 78 214 7.8E-30 T 11-10-2018 IPR025419 Domain of unknown function DUF4142 dqs_3232 d96a96989bfd80ddfc8686c41306fdf6 153 Pfam PF02082 Transcriptional regulator 1 81 3.8E-24 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type dqs_3232 d96a96989bfd80ddfc8686c41306fdf6 153 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 2.1E-35 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type dqs_3232 d96a96989bfd80ddfc8686c41306fdf6 153 Gene3D G3DSA:1.10.10.10 1 139 9.5E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3232 d96a96989bfd80ddfc8686c41306fdf6 153 SUPERFAMILY SSF46785 2 133 3.22E-37 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0050 cc07fbcc6c96f20684b3a9f19fb0b2ca 303 SMART SM00342 218 302 5.0E-32 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0050 cc07fbcc6c96f20684b3a9f19fb0b2ca 303 Pfam PF12833 Helix-turn-helix domain 224 302 2.1E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0050 cc07fbcc6c96f20684b3a9f19fb0b2ca 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 255 298 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_0050 cc07fbcc6c96f20684b3a9f19fb0b2ca 303 SUPERFAMILY SSF46689 203 251 2.66E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0050 cc07fbcc6c96f20684b3a9f19fb0b2ca 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 286 302 3.3E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_0050 cc07fbcc6c96f20684b3a9f19fb0b2ca 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 286 3.3E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_0050 cc07fbcc6c96f20684b3a9f19fb0b2ca 303 SUPERFAMILY SSF46689 255 302 2.55E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0050 cc07fbcc6c96f20684b3a9f19fb0b2ca 303 Gene3D G3DSA:1.10.10.60 195 303 6.0E-32 T 11-10-2018 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Pfam PF10385 RNA polymerase beta subunit external 1 domain 616 681 1.2E-22 T 11-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:3.90.1110.10 328 467 2.4E-27 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1373 0.0 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:2.40.50.150 858 975 2.0E-43 T 11-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:2.40.270.10 1064 1277 4.3E-84 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:2.40.50.100 739 813 6.2E-28 T 11-10-2018 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Pfam PF00562 RNA polymerase Rpb2, domain 6 743 1299 6.7E-162 T 11-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Pfam PF04560 RNA polymerase Rpb2, domain 7 1301 1375 5.5E-27 T 11-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Pfam PF04563 RNA polymerase beta subunit 27 525 2.4E-38 T 11-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:3.90.1100.10 667 738 1.9E-21 T 11-10-2018 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:3.90.1100.10 18 175 3.4E-53 T 11-10-2018 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 SUPERFAMILY SSF64484 12 1375 0.0 T 11-10-2018 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:3.90.1100.10 468 647 1.7E-71 T 11-10-2018 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1101 1113 - T 11-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Pfam PF04561 RNA polymerase Rpb2, domain 2 155 234 5.9E-8 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Pfam PF04561 RNA polymerase Rpb2, domain 2 433 479 3.9E-7 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Pfam PF04565 RNA polymerase Rpb2, domain 3 538 605 1.1E-31 T 11-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:3.90.1800.10 1287 1342 6.8E-11 T 11-10-2018 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Gene3D G3DSA:2.40.270.10 815 857 5.2E-7 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3563 978d7c1c5fece2e58651989e4bf8de7b 1377 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1377 12.281 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3945 84da5d54ac4ef69d82b1760382a9d883 103 SUPERFAMILY SSF159127 1 78 2.09E-17 T 11-10-2018 IPR037254 HupF/HypC superfamily dqs_3945 84da5d54ac4ef69d82b1760382a9d883 103 Pfam PF01455 HupF/HypC family 1 66 1.9E-16 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3945 84da5d54ac4ef69d82b1760382a9d883 103 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 11-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site dqs_3945 84da5d54ac4ef69d82b1760382a9d883 103 Gene3D G3DSA:2.40.50.970 1 75 4.2E-12 T 11-10-2018 IPR037254 HupF/HypC superfamily dqs_3945 84da5d54ac4ef69d82b1760382a9d883 103 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 39 55 5.4E-10 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3945 84da5d54ac4ef69d82b1760382a9d883 103 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 5.4E-10 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3945 84da5d54ac4ef69d82b1760382a9d883 103 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 57 69 5.4E-10 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_3945 84da5d54ac4ef69d82b1760382a9d883 103 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 73 4.5E-21 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC dqs_4028 b012ddc12ffec6efa6a7fc54e2e49890 629 SUPERFAMILY SSF49879 22 104 2.49E-18 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 dqs_4028 b012ddc12ffec6efa6a7fc54e2e49890 629 SMART SM00240 26 77 3.0E-6 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_4028 b012ddc12ffec6efa6a7fc54e2e49890 629 Gene3D G3DSA:2.60.200.20 14 104 1.8E-15 T 11-10-2018 dqs_4028 b012ddc12ffec6efa6a7fc54e2e49890 629 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 305 621 3.0E-58 T 11-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein dqs_4028 b012ddc12ffec6efa6a7fc54e2e49890 629 Pfam PF00498 FHA domain 28 93 1.7E-11 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_3423 dd0fd4722fee06e328498be89cf716b0 250 Gene3D G3DSA:3.40.630.30 53 219 6.6E-44 T 11-10-2018 dqs_3423 dd0fd4722fee06e328498be89cf716b0 250 SUPERFAMILY SSF55729 75 218 3.32E-18 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_2751 23391032fdce40fee8e3ee8d2269065e 422 Pfam PF04230 Polysaccharide pyruvyl transferase 166 341 6.7E-13 T 11-10-2018 IPR007345 Polysaccharide pyruvyl transferase dqs_0947 9a128b65d92b4ebebdfa679b4ec32bbf 312 Gene3D G3DSA:3.40.50.150 10 307 9.4E-102 T 11-10-2018 dqs_0947 9a128b65d92b4ebebdfa679b4ec32bbf 312 Gene3D G3DSA:1.10.150.170 111 213 9.4E-102 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 dqs_0947 9a128b65d92b4ebebdfa679b4ec32bbf 312 Pfam PF01795 MraW methylase family 5 307 3.6E-102 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 dqs_0947 9a128b65d92b4ebebdfa679b4ec32bbf 312 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 307 8.0E-107 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 dqs_0947 9a128b65d92b4ebebdfa679b4ec32bbf 312 SUPERFAMILY SSF53335 7 307 5.79E-47 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0947 9a128b65d92b4ebebdfa679b4ec32bbf 312 SUPERFAMILY SSF81799 113 212 5.75E-31 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 dqs_0947 9a128b65d92b4ebebdfa679b4ec32bbf 312 PIRSF PIRSF004486 1 309 3.7E-97 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 dqs_0947 9a128b65d92b4ebebdfa679b4ec32bbf 312 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 308 37.126 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 dqs_1714 509f1ac841f323ec00c6b7e1186a0e76 255 Pfam PF05742 Transport and Golgi organisation 2 1 236 9.6E-60 T 11-10-2018 IPR008551 Transport and Golgi organisation protein 2 dqs_1714 509f1ac841f323ec00c6b7e1186a0e76 255 Gene3D G3DSA:3.60.60.10 6 232 7.4E-7 T 11-10-2018 dqs_2522 cfb6d781c177cc51172ef40d2a528793 331 Pfam PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) 37 182 6.6E-8 T 11-10-2018 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 dqs_0626 61bd4c9f2a675a5e5ff50c0e691d7c9b 169 SUPERFAMILY SSF160059 114 164 9.15E-9 T 11-10-2018 dqs_1849 b0a621da197dad8d4fc64b517d6f0ec6 249 Gene3D G3DSA:3.40.50.620 1 248 2.0E-87 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1849 b0a621da197dad8d4fc64b517d6f0ec6 249 SMART SM00893 23 211 2.9E-69 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_1849 b0a621da197dad8d4fc64b517d6f0ec6 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_1849 b0a621da197dad8d4fc64b517d6f0ec6 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 2.0E-45 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_1849 b0a621da197dad8d4fc64b517d6f0ec6 249 SUPERFAMILY SSF52402 1 242 6.49E-85 T 11-10-2018 dqs_1849 b0a621da197dad8d4fc64b517d6f0ec6 249 PIRSF PIRSF000090 1 249 5.5E-84 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_2077 b0a621da197dad8d4fc64b517d6f0ec6 249 Gene3D G3DSA:3.40.50.620 1 248 2.0E-87 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2077 b0a621da197dad8d4fc64b517d6f0ec6 249 SMART SM00893 23 211 2.9E-69 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2077 b0a621da197dad8d4fc64b517d6f0ec6 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_2077 b0a621da197dad8d4fc64b517d6f0ec6 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 2.0E-45 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2077 b0a621da197dad8d4fc64b517d6f0ec6 249 SUPERFAMILY SSF52402 1 242 6.49E-85 T 11-10-2018 dqs_2077 b0a621da197dad8d4fc64b517d6f0ec6 249 PIRSF PIRSF000090 1 249 5.5E-84 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_3342 31e38f04c5eef2bb2714482387461f07 98 SUPERFAMILY SSF54975 11 94 4.36E-26 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 dqs_3342 31e38f04c5eef2bb2714482387461f07 98 Gene3D G3DSA:3.30.70.100 1 94 5.4E-28 T 11-10-2018 dqs_3342 31e38f04c5eef2bb2714482387461f07 98 PRINTS PR00112 Acylphosphatase signature 10 25 4.8E-7 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 dqs_3342 31e38f04c5eef2bb2714482387461f07 98 PRINTS PR00112 Acylphosphatase signature 31 56 4.8E-7 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 dqs_3342 31e38f04c5eef2bb2714482387461f07 98 ProSitePatterns PS00151 Acylphosphatase signature 2. 39 55 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 dqs_3342 31e38f04c5eef2bb2714482387461f07 98 Pfam PF00708 Acylphosphatase 13 92 6.2E-24 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 dqs_4091 7ca428a467b7399f00647241f36d2253 474 Pfam PF00929 Exonuclease 8 157 3.6E-27 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_4091 7ca428a467b7399f00647241f36d2253 474 Gene3D G3DSA:3.30.420.10 3 168 3.7E-44 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_4091 7ca428a467b7399f00647241f36d2253 474 SUPERFAMILY SSF53098 2 172 1.62E-52 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_4091 7ca428a467b7399f00647241f36d2253 474 SMART SM00479 6 171 3.7E-37 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_4091 7ca428a467b7399f00647241f36d2253 474 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 7 161 5.0E-27 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_4091 7ca428a467b7399f00647241f36d2253 474 Gene3D G3DSA:3.40.1440.10 192 291 1.4E-15 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 dqs_3248 31d51738fedb443888baede24ce367ae 98 Pfam PF01381 Helix-turn-helix 9 46 3.7E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_3248 31d51738fedb443888baede24ce367ae 98 Gene3D G3DSA:1.10.260.40 8 81 3.5E-11 T 11-10-2018 dqs_3248 31d51738fedb443888baede24ce367ae 98 SUPERFAMILY SSF47413 9 63 2.56E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_3073 5541d41d936423fc7685507b1fed2650 145 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 62 139 5.6E-13 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3073 5541d41d936423fc7685507b1fed2650 145 SUPERFAMILY SSF46626 14 142 9.88E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3073 5541d41d936423fc7685507b1fed2650 145 Gene3D G3DSA:1.10.760.10 49 145 8.5E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3073 5541d41d936423fc7685507b1fed2650 145 TIGRFAM TIGR04494 c550_PedF: cytochrome c-550 PedF 15 145 5.7E-63 T 11-10-2018 IPR030991 Cytochrome c-550 PedF dqs_2521 bce1a57eefa0f57ec0f39f58f095d7b2 245 Gene3D G3DSA:1.10.12.10 192 245 7.3E-10 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_2521 bce1a57eefa0f57ec0f39f58f095d7b2 245 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 244 1.5E-43 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_2521 bce1a57eefa0f57ec0f39f58f095d7b2 245 SUPERFAMILY SSF52096 2 245 1.93E-60 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_2521 bce1a57eefa0f57ec0f39f58f095d7b2 245 Gene3D G3DSA:3.90.226.10 1 187 3.5E-44 T 11-10-2018 dqs_0979 ee1a92dccfa9deead9f6edd06fcdf077 345 Pfam PF02547 Queuosine biosynthesis protein 5 338 7.0E-131 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 dqs_0979 ee1a92dccfa9deead9f6edd06fcdf077 345 SUPERFAMILY SSF111337 4 338 2.22E-132 T 11-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 dqs_0979 ee1a92dccfa9deead9f6edd06fcdf077 345 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 339 46.361 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 dqs_0979 ee1a92dccfa9deead9f6edd06fcdf077 345 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 4 338 1.1E-127 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 dqs_0979 ee1a92dccfa9deead9f6edd06fcdf077 345 Gene3D G3DSA:3.40.1780.10 16 338 8.7E-113 T 11-10-2018 dqs_0979 ee1a92dccfa9deead9f6edd06fcdf077 345 Gene3D G3DSA:2.40.10.240 64 161 8.7E-113 T 11-10-2018 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 1.4E-169 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 SMART SM00382 58 229 1.5E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 SUPERFAMILY SSF52540 4 268 3.57E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 Gene3D G3DSA:3.40.50.300 26 269 5.1E-82 T 11-10-2018 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 ProSitePatterns PS00321 recA signature. 214 222 - T 11-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 Pfam PF00154 recA bacterial DNA recombination protein 7 269 1.4E-142 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 PRINTS PR00142 RecA protein signature 244 273 2.9E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 PRINTS PR00142 RecA protein signature 94 123 2.9E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 PRINTS PR00142 RecA protein signature 128 157 2.9E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 PRINTS PR00142 RecA protein signature 298 315 2.9E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 PRINTS PR00142 RecA protein signature 211 239 2.9E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 PRINTS PR00142 RecA protein signature 166 195 2.9E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 SUPERFAMILY SSF54752 269 326 1.31E-21 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 Hamap MF_00268 Protein RecA [recA]. 5 330 51.515 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 dqs_0517 56562f0ea84aceb215d90b75a187a85f 344 Gene3D G3DSA:3.30.250.10 270 343 3.9E-28 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 166 329 3.5E-47 T 11-10-2018 IPR000160 GGDEF domain dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 Gene3D G3DSA:3.20.20.450 344 597 6.6E-92 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 Pfam PF13426 PAS domain 55 158 4.6E-8 T 11-10-2018 IPR000014 PAS domain dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 SMART SM00267 159 331 3.9E-68 T 11-10-2018 IPR000160 GGDEF domain dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 Gene3D G3DSA:3.30.450.20 41 168 9.8E-19 T 11-10-2018 dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 SUPERFAMILY SSF55785 31 157 1.19E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 Pfam PF00563 EAL domain 347 584 4.6E-65 T 11-10-2018 IPR001633 EAL domain dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 SUPERFAMILY SSF55073 176 332 1.49E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 SMART SM00086 117 159 1.5E-4 T 11-10-2018 IPR001610 PAC motif dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 SMART SM00052 341 589 3.8E-113 T 11-10-2018 IPR001633 EAL domain dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 SUPERFAMILY SSF141868 347 597 2.09E-81 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 40 165 3.2E-14 T 11-10-2018 IPR000014 PAS domain dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 Pfam PF00990 Diguanylate cyclase, GGDEF domain 170 326 5.5E-50 T 11-10-2018 IPR000160 GGDEF domain dqs_1024 ddcdbf9264b38f8497cd3feb92e9f98c 610 Gene3D G3DSA:3.30.70.270 169 343 9.2E-63 T 11-10-2018 dqs_3392 e0f45d7647dc3d205662dde3c477d327 673 Pfam PF01757 Acyltransferase family 13 339 3.8E-29 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 dqs_3392 e0f45d7647dc3d205662dde3c477d327 673 SUPERFAMILY SSF52266 416 656 9.94E-7 T 11-10-2018 dqs_3903 04f4d1d655bdaaf1bd808e56f94839c6 298 Pfam PF00892 EamA-like transporter family 10 143 1.5E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_3903 04f4d1d655bdaaf1bd808e56f94839c6 298 Pfam PF00892 EamA-like transporter family 156 292 1.3E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_3903 04f4d1d655bdaaf1bd808e56f94839c6 298 SUPERFAMILY SSF103481 45 144 3.01E-11 T 11-10-2018 dqs_3903 04f4d1d655bdaaf1bd808e56f94839c6 298 SUPERFAMILY SSF103481 192 295 9.68E-15 T 11-10-2018 dqs_0791 b512c34a8114d6ba2a71d524f21f5b1c 453 Gene3D G3DSA:1.10.860.10 1 164 1.8E-52 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal dqs_0791 b512c34a8114d6ba2a71d524f21f5b1c 453 SUPERFAMILY SSF48024 5 116 7.98E-38 T 11-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 dqs_0791 b512c34a8114d6ba2a71d524f21f5b1c 453 Pfam PF03796 DnaB-like helicase C terminal domain 187 442 4.4E-114 T 11-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 dqs_0791 b512c34a8114d6ba2a71d524f21f5b1c 453 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 6 443 1.7E-177 T 11-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 dqs_0791 b512c34a8114d6ba2a71d524f21f5b1c 453 SUPERFAMILY SSF52540 185 435 5.07E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0791 b512c34a8114d6ba2a71d524f21f5b1c 453 SMART SM00382 204 402 0.002 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0791 b512c34a8114d6ba2a71d524f21f5b1c 453 Pfam PF00772 DnaB-like helicase N terminal domain 7 108 3.1E-35 T 11-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 dqs_0791 b512c34a8114d6ba2a71d524f21f5b1c 453 Gene3D G3DSA:3.40.50.300 165 445 1.4E-105 T 11-10-2018 dqs_1701 bdb2f5ed81e4d943d80b2e25d004e6f0 107 Gene3D G3DSA:3.10.20.280 1 92 7.9E-30 T 11-10-2018 IPR037021 RnfH superfamily dqs_1701 bdb2f5ed81e4d943d80b2e25d004e6f0 107 SUPERFAMILY SSF54285 6 82 1.29E-21 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp dqs_1701 bdb2f5ed81e4d943d80b2e25d004e6f0 107 Pfam PF03658 RnfH family Ubiquitin 7 90 6.7E-32 T 11-10-2018 IPR005346 RnfH protein dqs_1701 bdb2f5ed81e4d943d80b2e25d004e6f0 107 Hamap MF_00460 Protein RnfH [rnfH]. 7 98 24.091 T 11-10-2018 IPR005346 RnfH protein dqs_0884 6d9c742b2bffca17eee4fb8074f45e7b 85 SUPERFAMILY SSF82657 3 80 1.7E-24 T 11-10-2018 IPR036065 BolA-like superfamily dqs_0884 6d9c742b2bffca17eee4fb8074f45e7b 85 PIRSF PIRSF003113 1 83 3.6E-21 T 11-10-2018 IPR002634 BolA protein dqs_0884 6d9c742b2bffca17eee4fb8074f45e7b 85 Gene3D G3DSA:3.30.300.90 2 75 7.1E-27 T 11-10-2018 dqs_0884 6d9c742b2bffca17eee4fb8074f45e7b 85 Pfam PF01722 BolA-like protein 24 74 6.9E-16 T 11-10-2018 IPR002634 BolA protein dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 PIRSF PIRSF006615 1 495 5.7E-182 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 Gene3D G3DSA:1.10.1370.30 1 494 8.6E-192 T 11-10-2018 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 329 348 1.9E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 146 166 1.9E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 242 261 1.9E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 399 420 1.9E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 262 281 1.9E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 444 462 1.9E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 289 305 1.9E-46 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 2 490 1.5E-88 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 dqs_3689 b6ff484bf0ace80fc5b0461c8b3a0397 496 SUPERFAMILY SSF55486 3 493 1.83E-111 T 11-10-2018 dqs_2145 e49590f73cac6777c03ac286d0d3f86a 383 Gene3D G3DSA:3.40.50.2300 28 365 2.1E-108 T 11-10-2018 dqs_2145 e49590f73cac6777c03ac286d0d3f86a 383 Pfam PF13458 Periplasmic binding protein 25 363 6.3E-50 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_2145 e49590f73cac6777c03ac286d0d3f86a 383 SUPERFAMILY SSF53822 26 381 1.81E-70 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_2145 e49590f73cac6777c03ac286d0d3f86a 383 Gene3D G3DSA:3.40.50.2300 143 374 2.1E-108 T 11-10-2018 dqs_0541 ba79c6876a508b4e9c09932ca5ec7374 309 SUPERFAMILY SSF48452 185 291 2.78E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0541 ba79c6876a508b4e9c09932ca5ec7374 309 Gene3D G3DSA:1.25.40.10 192 308 1.9E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0541 ba79c6876a508b4e9c09932ca5ec7374 309 Gene3D G3DSA:3.90.70.10 49 191 3.6E-10 T 11-10-2018 dqs_0541 ba79c6876a508b4e9c09932ca5ec7374 309 Pfam PF13529 Peptidase_C39 like family 45 151 7.1E-8 T 11-10-2018 IPR039564 Peptidase C39-like dqs_0541 ba79c6876a508b4e9c09932ca5ec7374 309 Pfam PF13432 Tetratricopeptide repeat 233 291 4.1E-11 T 11-10-2018 dqs_3533 ae9ffade30f9eb5154ecf35c6178a721 120 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 11-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3533 ae9ffade30f9eb5154ecf35c6178a721 120 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.739 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3533 ae9ffade30f9eb5154ecf35c6178a721 120 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.5E-53 T 11-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3533 ae9ffade30f9eb5154ecf35c6178a721 120 Pfam PF00416 Ribosomal protein S13/S18 3 108 3.9E-32 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3533 ae9ffade30f9eb5154ecf35c6178a721 120 SUPERFAMILY SSF46946 2 114 1.15E-45 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 dqs_3533 ae9ffade30f9eb5154ecf35c6178a721 120 Gene3D G3DSA:4.10.910.10 72 117 5.8E-26 T 11-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3533 ae9ffade30f9eb5154ecf35c6178a721 120 Gene3D G3DSA:1.10.8.50 1 71 9.6E-28 T 11-10-2018 dqs_3533 ae9ffade30f9eb5154ecf35c6178a721 120 PIRSF PIRSF002134 1 120 2.2E-43 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 14 464 4.3E-114 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 Gene3D G3DSA:3.90.190.20 327 462 3.6E-40 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 SUPERFAMILY SSF51984 10 101 5.49E-15 T 11-10-2018 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 Pfam PF08245 Mur ligase middle domain 126 306 7.4E-29 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 SUPERFAMILY SSF53244 326 466 7.32E-42 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 Gene3D G3DSA:3.40.50.720 9 101 1.4E-21 T 11-10-2018 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 SUPERFAMILY SSF53623 122 324 3.4E-45 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 13 466 31.971 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_0953 5e6c1b51f9f0ee46115db4b9f7c10e1c 472 Gene3D G3DSA:3.40.1190.10 103 326 1.4E-55 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_2925 c395c2e87c623143aa4c17dc052e3684 318 Pfam PF00174 Oxidoreductase molybdopterin binding domain 105 256 4.1E-30 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 dqs_2925 c395c2e87c623143aa4c17dc052e3684 318 SUPERFAMILY SSF56524 73 314 2.88E-91 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 dqs_2925 c395c2e87c623143aa4c17dc052e3684 318 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 7 318 55.5 T 11-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 dqs_2925 c395c2e87c623143aa4c17dc052e3684 318 Gene3D G3DSA:3.90.420.10 63 318 1.2E-106 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Gene3D G3DSA:3.30.2090.10 181 278 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 SUPERFAMILY SSF82866 299 499 4.32E-52 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Gene3D G3DSA:3.30.70.1430 40 828 0.0 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 SUPERFAMILY SSF82693 576 682 7.32E-26 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Gene3D G3DSA:1.20.1640.10 10 523 0.0 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1042 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Gene3D G3DSA:3.30.70.1430 578 679 0.0 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 632 646 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 PRINTS PR00702 Acriflavin resistance protein family signature 563 580 9.9E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Gene3D G3DSA:3.30.70.1320 135 335 0.0 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 SUPERFAMILY SSF82693 139 333 2.72E-26 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 SUPERFAMILY SSF82714 185 274 1.01E-19 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 SUPERFAMILY SSF82714 733 819 7.98E-22 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Pfam PF00873 AcrB/AcrD/AcrF family 3 1037 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 SUPERFAMILY SSF82693 41 134 1.7E-25 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 SUPERFAMILY SSF82693 683 868 4.97E-26 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Gene3D G3DSA:3.30.2090.10 732 820 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 SUPERFAMILY SSF82866 842 1037 9.42E-46 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Gene3D G3DSA:3.30.70.1440 680 877 0.0 T 11-10-2018 dqs_2730 5d0f27acec91b133577017ed5eaa1453 1063 Gene3D G3DSA:1.20.1640.10 524 1034 0.0 T 11-10-2018 dqs_2677 8482c5c0ffbc29b81ef6180b2e7c50d1 174 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 40 166 3.7E-23 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 Pfam PF00311 Phosphoenolpyruvate carboxylase 137 917 8.0E-287 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 404 424 9.3E-56 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 140 153 9.3E-56 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 253 268 9.3E-56 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 193 209 9.3E-56 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 743 769 9.3E-56 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 567 587 9.3E-56 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 609 638 9.3E-56 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 569 581 - T 11-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 SUPERFAMILY SSF51621 10 917 0.0 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 141 152 - T 11-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 Gene3D G3DSA:1.20.1440.90 281 407 3.9E-10 T 11-10-2018 dqs_1093 4630f7d0afb333e188309ef8a27e4b5a 917 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 2 917 19.626 T 11-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 dqs_2739 9dd9868415a60171f0eede04383f355c 145 Gene3D G3DSA:3.30.1490.190 86 142 3.3E-21 T 11-10-2018 dqs_2739 9dd9868415a60171f0eede04383f355c 145 SUPERFAMILY SSF46785 6 133 1.02E-41 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2739 9dd9868415a60171f0eede04383f355c 145 Gene3D G3DSA:1.10.10.10 1 84 1.2E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2739 9dd9868415a60171f0eede04383f355c 145 Pfam PF01475 Ferric uptake regulator family 12 130 3.0E-45 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 dqs_3678 d17c2d9c71c949cbe5d6ee61400f3a41 258 Pfam PF11761 Cobalamin biosynthesis central region 151 253 4.6E-12 T 11-10-2018 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 dqs_3678 d17c2d9c71c949cbe5d6ee61400f3a41 258 Gene3D G3DSA:3.40.50.11220 10 140 2.4E-28 T 11-10-2018 dqs_3678 d17c2d9c71c949cbe5d6ee61400f3a41 258 Pfam PF11760 Cobalamin synthesis G N-terminal 67 145 3.6E-32 T 11-10-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 dqs_3678 d17c2d9c71c949cbe5d6ee61400f3a41 258 SUPERFAMILY SSF159672 9 195 1.44E-51 T 11-10-2018 IPR038029 GbiG N-terminal domain superfamily KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Gene3D G3DSA:1.10.10.650 3 109 7.9E-41 T 11-10-2018 IPR023319 Tex-like protein, HTH domain superfamily dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 SMART SM00732 324 423 6.4E-39 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Pfam PF12836 Helix-hairpin-helix motif 490 554 4.0E-28 T 11-10-2018 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Pfam PF00575 S1 RNA binding domain 648 719 5.2E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 SUPERFAMILY SSF53098 320 468 9.1E-51 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 SUPERFAMILY SSF47781 469 556 2.11E-28 T 11-10-2018 IPR010994 RuvA domain 2-like dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 SUPERFAMILY SSF158832 3 319 5.75E-120 T 11-10-2018 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Gene3D G3DSA:3.30.420.140 323 450 2.2E-154 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Gene3D G3DSA:2.40.50.140 630 722 1.4E-28 T 11-10-2018 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Pfam PF09371 Tex-like protein N-terminal domain 9 192 2.6E-68 T 11-10-2018 IPR018974 Tex-like protein, N-terminal dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 SUPERFAMILY SSF47781 559 631 2.07E-20 T 11-10-2018 IPR010994 RuvA domain 2-like dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 SMART SM00316 648 719 4.7E-24 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Gene3D G3DSA:1.10.3500.10 112 497 2.2E-154 T 11-10-2018 IPR023323 Tex-like domain superfamily dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Gene3D G3DSA:1.10.150.310 498 629 1.3E-50 T 11-10-2018 dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 SUPERFAMILY SSF50249 636 724 4.33E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1809 28ea0df94be0010580127cb6f62adf2e 773 Pfam PF16921 Tex protein YqgF-like domain 325 450 3.0E-51 T 11-10-2018 IPR032639 Tex protein, YqgF-like domain dqs_2653 5b2490319ba4becca5350f15cac7f15c 381 Gene3D G3DSA:3.40.50.2300 138 370 1.0E-107 T 11-10-2018 dqs_2653 5b2490319ba4becca5350f15cac7f15c 381 Pfam PF13458 Periplasmic binding protein 24 371 6.5E-43 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_2653 5b2490319ba4becca5350f15cac7f15c 381 Gene3D G3DSA:3.40.50.2300 26 361 1.0E-107 T 11-10-2018 dqs_2653 5b2490319ba4becca5350f15cac7f15c 381 SUPERFAMILY SSF53822 23 377 4.71E-64 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_0564 1fb26f0206e2149cb087607fd638e95d 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 102 5.7E-20 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 dqs_0564 1fb26f0206e2149cb087607fd638e95d 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 106 2.7E-37 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 dqs_0564 1fb26f0206e2149cb087607fd638e95d 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 dqs_0564 1fb26f0206e2149cb087607fd638e95d 107 Gene3D G3DSA:2.60.300.12 1 107 7.2E-35 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 dqs_0564 1fb26f0206e2149cb087607fd638e95d 107 SUPERFAMILY SSF89360 1 96 1.1E-29 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 dqs_2988 0c80e2519adbd36dccc2b1ff447e5d9c 620 Gene3D G3DSA:3.30.450.290 34 174 7.4E-6 T 11-10-2018 dqs_2988 0c80e2519adbd36dccc2b1ff447e5d9c 620 SMART SM00267 436 608 4.8E-59 T 11-10-2018 IPR000160 GGDEF domain dqs_2988 0c80e2519adbd36dccc2b1ff447e5d9c 620 Gene3D G3DSA:3.30.70.270 440 610 3.9E-58 T 11-10-2018 dqs_2988 0c80e2519adbd36dccc2b1ff447e5d9c 620 SUPERFAMILY SSF55073 452 610 6.28E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2988 0c80e2519adbd36dccc2b1ff447e5d9c 620 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 445 606 7.3E-55 T 11-10-2018 IPR000160 GGDEF domain dqs_2988 0c80e2519adbd36dccc2b1ff447e5d9c 620 Pfam PF00990 Diguanylate cyclase, GGDEF domain 448 604 6.5E-47 T 11-10-2018 IPR000160 GGDEF domain dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 Gene3D G3DSA:1.10.287.130 161 276 1.6E-20 T 11-10-2018 dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 324 431 1.4E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 Pfam PF00512 His Kinase A (phospho-acceptor) domain 212 273 8.4E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 SMART SM00387 324 433 1.7E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 SMART SM00388 211 276 1.2E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 1.0E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 375 1.0E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 SUPERFAMILY SSF55874 277 433 9.82E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 SUPERFAMILY SSF47384 194 273 3.34E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3818 d179d0bb935dbbf4f2fcca9588ca50c2 448 Gene3D G3DSA:3.30.565.10 278 432 1.6E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3727 f1df916c0031bf610790495149e5721f 377 Gene3D G3DSA:3.40.50.2000 1 190 3.3E-27 T 11-10-2018 dqs_3727 f1df916c0031bf610790495149e5721f 377 SUPERFAMILY SSF53756 1 371 4.59E-71 T 11-10-2018 dqs_3727 f1df916c0031bf610790495149e5721f 377 Pfam PF00534 Glycosyl transferases group 1 193 348 1.6E-31 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_3727 f1df916c0031bf610790495149e5721f 377 Pfam PF13439 Glycosyltransferase Family 4 16 176 2.3E-17 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3727 f1df916c0031bf610790495149e5721f 377 Gene3D G3DSA:3.40.50.2000 193 356 2.1E-36 T 11-10-2018 dqs_0341 4646797758826f3ef18ca98824690e5a 380 Pfam PF13458 Periplasmic binding protein 34 373 8.8E-56 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_0341 4646797758826f3ef18ca98824690e5a 380 Gene3D G3DSA:3.40.50.2300 34 368 1.5E-95 T 11-10-2018 dqs_0341 4646797758826f3ef18ca98824690e5a 380 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 55 71 1.8E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_0341 4646797758826f3ef18ca98824690e5a 380 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 74 92 1.8E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_0341 4646797758826f3ef18ca98824690e5a 380 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 33 49 1.8E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_0341 4646797758826f3ef18ca98824690e5a 380 Gene3D G3DSA:3.40.50.2300 152 372 1.5E-95 T 11-10-2018 dqs_0341 4646797758826f3ef18ca98824690e5a 380 SUPERFAMILY SSF53822 33 379 6.8E-64 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 Pfam PF00672 HAMP domain 375 423 7.3E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 SMART SM00304 375 428 3.8E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 SUPERFAMILY SSF47384 464 534 3.53E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 582 693 2.5E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 PRINTS PR00344 Bacterial sensor protein C-terminal signature 644 654 1.2E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 PRINTS PR00344 Bacterial sensor protein C-terminal signature 680 693 1.2E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 640 1.2E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 PRINTS PR00344 Bacterial sensor protein C-terminal signature 656 674 1.2E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 Pfam PF00512 His Kinase A (phospho-acceptor) domain 472 535 1.5E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 Pfam PF17202 Single cache domain 3 237 344 3.6E-28 T 11-10-2018 IPR033463 Single cache domain 3 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 SUPERFAMILY SSF55874 542 692 2.88E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 SUPERFAMILY SSF103190 208 340 2.88E-14 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 SMART SM00388 470 537 2.2E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 Gene3D G3DSA:3.30.565.10 540 700 1.9E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 SUPERFAMILY SSF158472 375 424 4.84E-8 T 11-10-2018 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 Gene3D G3DSA:1.10.287.130 446 532 4.9E-22 T 11-10-2018 dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 SMART SM00387 580 696 2.0E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3635 0d08d05eb6f38e32811fcf3cfcaf9484 711 Gene3D G3DSA:1.20.1480.50 341 434 7.2E-10 T 11-10-2018 dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 Gene3D G3DSA:3.30.70.270 412 577 2.2E-52 T 11-10-2018 dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 SUPERFAMILY SSF55785 272 404 1.31E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 Pfam PF03924 CHASE domain 96 209 3.6E-17 T 11-10-2018 IPR006189 CHASE domain dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 Pfam PF00990 Diguanylate cyclase, GGDEF domain 417 570 1.5E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 SMART SM00267 406 578 1.8E-55 T 11-10-2018 IPR000160 GGDEF domain dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 281 412 2.5E-13 T 11-10-2018 IPR000014 PAS domain dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 SMART SM01079 34 214 2.9E-47 T 11-10-2018 IPR006189 CHASE domain dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 Gene3D G3DSA:3.30.450.20 272 411 8.6E-19 T 11-10-2018 dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 SMART SM00091 284 350 1.0E-6 T 11-10-2018 IPR000014 PAS domain dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 Pfam PF08448 PAS fold 291 408 1.6E-9 T 11-10-2018 IPR013656 PAS fold-4 dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 415 570 3.2E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_0461 a54b7e6416bbc930ba4704710fc30c30 581 SUPERFAMILY SSF55073 422 570 1.88E-44 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_4015 7d83d5a4fc94adeaf16339d504933102 256 Gene3D G3DSA:3.30.930.10 17 255 6.1E-29 T 11-10-2018 dqs_4015 7d83d5a4fc94adeaf16339d504933102 256 SUPERFAMILY SSF55681 22 251 1.33E-31 T 11-10-2018 dqs_3821 ebfcd1e8ccf9c9bc7bcc7f3ca84494b4 214 Gene3D G3DSA:3.40.30.10 3 80 4.1E-25 T 11-10-2018 dqs_3821 ebfcd1e8ccf9c9bc7bcc7f3ca84494b4 214 SUPERFAMILY SSF47616 82 213 3.48E-32 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_3821 ebfcd1e8ccf9c9bc7bcc7f3ca84494b4 214 SUPERFAMILY SSF52833 1 85 5.83E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3821 ebfcd1e8ccf9c9bc7bcc7f3ca84494b4 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 82 2.8E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_3821 ebfcd1e8ccf9c9bc7bcc7f3ca84494b4 214 Gene3D G3DSA:1.20.1050.10 85 214 5.3E-54 T 11-10-2018 dqs_3821 ebfcd1e8ccf9c9bc7bcc7f3ca84494b4 214 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 213 1.2E-91 T 11-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 SUPERFAMILY SSF52540 82 353 9.88E-89 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 465 56.536 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 135 347 1.1E-62 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 78 6.6E-18 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 SUPERFAMILY SSF47917 350 465 1.28E-54 T 11-10-2018 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 Gene3D G3DSA:1.10.1140.10 350 466 1.1E-59 T 11-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 SUPERFAMILY SSF50615 1 80 3.4E-24 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 SMART SM00382 147 410 8.4E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 465 1.3E-251 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 Gene3D G3DSA:3.40.50.300 81 349 1.1E-111 T 11-10-2018 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 338 347 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0168 b89fe462e5e127a3127eac224ce72dcd 466 Gene3D G3DSA:2.40.10.170 1 80 9.7E-28 T 11-10-2018 dqs_0399 4ce034f52b549b547860756c2b21de47 149 Pfam PF13470 PIN domain 6 120 5.4E-22 T 11-10-2018 IPR002716 PIN domain dqs_0399 4ce034f52b549b547860756c2b21de47 149 SUPERFAMILY SSF88723 6 126 3.77E-9 T 11-10-2018 IPR029060 PIN-like domain superfamily dqs_0399 4ce034f52b549b547860756c2b21de47 149 TIGRFAM TIGR00305 TIGR00305: putative toxin-antitoxin system toxin component, PIN family 6 124 2.7E-9 T 11-10-2018 IPR002850 PIN family, putative toxin-antitoxin system toxin component dqs_0479 5d7ab2519a591164ae155fd706340849 794 Gene3D G3DSA:3.40.50.720 1 191 4.0E-54 T 11-10-2018 dqs_0479 5d7ab2519a591164ae155fd706340849 794 SUPERFAMILY SSF48179 342 451 2.81E-15 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_0479 5d7ab2519a591164ae155fd706340849 794 Gene3D G3DSA:1.10.1040.10 192 303 3.8E-15 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_0479 5d7ab2519a591164ae155fd706340849 794 SUPERFAMILY SSF48179 189 307 1.62E-19 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_0479 5d7ab2519a591164ae155fd706340849 794 SUPERFAMILY SSF51735 1 189 4.71E-41 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0479 5d7ab2519a591164ae155fd706340849 794 Gene3D G3DSA:3.90.226.10 481 693 3.8E-24 T 11-10-2018 dqs_0479 5d7ab2519a591164ae155fd706340849 794 SUPERFAMILY SSF52096 486 791 7.26E-34 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0479 5d7ab2519a591164ae155fd706340849 794 Pfam PF00378 Enoyl-CoA hydratase/isomerase 505 624 6.3E-12 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_0479 5d7ab2519a591164ae155fd706340849 794 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 187 3.5E-41 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_0479 5d7ab2519a591164ae155fd706340849 794 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 290 1.2E-9 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_0479 5d7ab2519a591164ae155fd706340849 794 Gene3D G3DSA:1.10.1040.10 352 422 3.5E-5 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_3201 64137ace614d510f2eac8b4c6d27a053 124 SUPERFAMILY SSF52980 18 115 8.58E-20 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 dqs_3201 64137ace614d510f2eac8b4c6d27a053 124 Gene3D G3DSA:3.40.960.10 17 117 2.4E-31 T 11-10-2018 dqs_3201 64137ace614d510f2eac8b4c6d27a053 124 Pfam PF04480 Protein of unknown function (DUF559) 8 113 2.9E-37 T 11-10-2018 IPR007569 Protein of unknown function DUF559 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 448 3.5E-60 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 360 380 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 Hamap MF_00186 Glycerol kinase [glpK]. 1 495 54.147 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 Gene3D G3DSA:3.30.420.40 252 496 8.0E-86 T 11-10-2018 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 PIRSF PIRSF000538 1 496 7.4E-170 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 SUPERFAMILY SSF53067 3 253 3.52E-88 T 11-10-2018 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 SUPERFAMILY SSF53067 253 494 9.06E-77 T 11-10-2018 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 250 1.8E-73 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 494 2.2E-203 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 Gene3D G3DSA:3.30.420.40 1 251 3.6E-100 T 11-10-2018 dqs_2886 c92147bbaaa6271219547df4d6d73b99 496 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 dqs_0931 e09ae4a5a7187513b0b91cb85969a939 429 Pfam PF13717 zinc-ribbon domain 1 36 4.0E-11 T 11-10-2018 IPR011723 Zinc finger/thioredoxin putative dqs_0931 e09ae4a5a7187513b0b91cb85969a939 429 Pfam PF11906 Protein of unknown function (DUF3426) 282 426 6.3E-45 T 11-10-2018 IPR021834 Protein of unknown function DUF3426 dqs_0931 e09ae4a5a7187513b0b91cb85969a939 429 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 1 37 1.7E-11 T 11-10-2018 IPR011723 Zinc finger/thioredoxin putative dqs_3926 6c1bbeb0a238b5578eea6d8e53828939 438 Pfam PF16325 Peptidase family U32 C-terminal domain 356 425 2.1E-13 T 11-10-2018 IPR032525 Peptidase family U32, C-terminal dqs_3926 6c1bbeb0a238b5578eea6d8e53828939 438 Pfam PF01136 Peptidase family U32 63 337 8.2E-97 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 dqs_3926 6c1bbeb0a238b5578eea6d8e53828939 438 ProSitePatterns PS01276 Peptidase family U32 signature. 148 166 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 dqs_3926 6c1bbeb0a238b5578eea6d8e53828939 438 Gene3D G3DSA:2.40.30.10 353 426 1.3E-7 T 11-10-2018 dqs_1819 f5f979e01ebeb4e479a9f8843f8aed0d 358 SUPERFAMILY SSF51569 8 348 4.81E-128 T 11-10-2018 dqs_1819 f5f979e01ebeb4e479a9f8843f8aed0d 358 Pfam PF00793 DAHP synthetase I family 43 340 1.5E-87 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 dqs_1819 f5f979e01ebeb4e479a9f8843f8aed0d 358 PIRSF PIRSF001361 1 355 2.0E-152 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 dqs_1819 f5f979e01ebeb4e479a9f8843f8aed0d 358 Gene3D G3DSA:3.20.20.70 3 353 2.2E-143 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1819 f5f979e01ebeb4e479a9f8843f8aed0d 358 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 7 346 9.2E-141 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 180 208 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 173 181 2.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 121 132 2.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 193 212 2.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 SUPERFAMILY SSF51735 44 285 2.76E-83 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 54 283 4.1E-64 T 11-10-2018 dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 248 268 1.7E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 132 1.7E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 231 1.7E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 46 63 1.7E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 183 1.7E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 212 1.7E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1882 720cdcff04b7974e648c08b7b72e61c1 288 Gene3D G3DSA:3.40.50.720 3 286 2.9E-92 T 11-10-2018 dqs_3042 997e10181484d6c851ebd9aa61437ef9 358 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 353 2.7E-80 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 dqs_3042 997e10181484d6c851ebd9aa61437ef9 358 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 353 2.7E-124 T 11-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 dqs_1572 9003cf38de0d21fec01a332557055e1f 284 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 204 221 - T 11-10-2018 IPR000540 Flagellar motor protein MotA, conserved site dqs_1572 9003cf38de0d21fec01a332557055e1f 284 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 232 1.4E-8 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel dqs_1572 9003cf38de0d21fec01a332557055e1f 284 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 280 4.8E-113 T 11-10-2018 IPR022522 Flagellar motor stator, MotA dqs_3662 ad01b93dd22a2ae8d8c0c5d8ade5efa2 331 Gene3D G3DSA:3.90.1150.10 22 299 1.8E-49 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3662 ad01b93dd22a2ae8d8c0c5d8ade5efa2 331 SUPERFAMILY SSF53383 3 322 3.24E-57 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_3662 ad01b93dd22a2ae8d8c0c5d8ade5efa2 331 Pfam PF00155 Aminotransferase class I and II 54 311 4.3E-30 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_3662 ad01b93dd22a2ae8d8c0c5d8ade5efa2 331 Gene3D G3DSA:3.40.640.10 34 236 1.8E-49 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_3662 ad01b93dd22a2ae8d8c0c5d8ade5efa2 331 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 188 201 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 dqs_3662 ad01b93dd22a2ae8d8c0c5d8ade5efa2 331 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 4 321 9.3E-108 T 11-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 dqs_3715 808ece179344f051a8d8cd8452f1172a 600 Gene3D G3DSA:1.20.1560.10 15 337 1.1E-76 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_3715 808ece179344f051a8d8cd8452f1172a 600 SMART SM00382 379 566 2.6E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3715 808ece179344f051a8d8cd8452f1172a 600 Gene3D G3DSA:3.40.50.300 338 592 4.8E-94 T 11-10-2018 dqs_3715 808ece179344f051a8d8cd8452f1172a 600 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3715 808ece179344f051a8d8cd8452f1172a 600 Pfam PF00005 ABC transporter 370 520 9.3E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3715 808ece179344f051a8d8cd8452f1172a 600 SUPERFAMILY SSF90123 17 338 3.53E-72 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_3715 808ece179344f051a8d8cd8452f1172a 600 SUPERFAMILY SSF52540 344 591 9.54E-94 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3715 808ece179344f051a8d8cd8452f1172a 600 Pfam PF00664 ABC transporter transmembrane region 31 303 2.1E-50 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_3715 808ece179344f051a8d8cd8452f1172a 600 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 14 593 3.7E-251 T 11-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 dqs_1316 8726302760a22f089904fbaf56ce5161 366 Gene3D G3DSA:3.90.380.10 17 358 1.4E-41 T 11-10-2018 dqs_1316 8726302760a22f089904fbaf56ce5161 366 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 170 363 1.0E-32 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 dqs_1316 8726302760a22f089904fbaf56ce5161 366 SUPERFAMILY SSF50022 5 140 5.5E-32 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1316 8726302760a22f089904fbaf56ce5161 366 Gene3D G3DSA:2.102.10.10 37 150 1.4E-41 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1316 8726302760a22f089904fbaf56ce5161 366 Pfam PF00355 Rieske [2Fe-2S] domain 43 119 6.4E-12 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_1316 8726302760a22f089904fbaf56ce5161 366 SUPERFAMILY SSF55961 160 362 5.02E-42 T 11-10-2018 dqs_0941 adf4a2ba800e7264f69c4d5942c9ec20 197 Gene3D G3DSA:3.40.50.10490 1 195 8.1E-76 T 11-10-2018 dqs_0941 adf4a2ba800e7264f69c4d5942c9ec20 197 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 2 192 36.161 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 dqs_0941 adf4a2ba800e7264f69c4d5942c9ec20 197 SUPERFAMILY SSF53697 3 190 9.27E-59 T 11-10-2018 dqs_0941 adf4a2ba800e7264f69c4d5942c9ec20 197 Pfam PF13580 SIS domain 10 146 2.0E-39 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 dqs_0125 ec2b340d4267f0de04935cc4055f3154 149 Gene3D G3DSA:3.10.129.10 1 147 1.1E-49 T 11-10-2018 dqs_0125 ec2b340d4267f0de04935cc4055f3154 149 Pfam PF01575 MaoC like domain 11 111 1.2E-16 T 11-10-2018 IPR002539 MaoC-like dehydratase domain dqs_0125 ec2b340d4267f0de04935cc4055f3154 149 SUPERFAMILY SSF54637 3 147 9.3E-38 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 47 518 36.295 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 Gene3D G3DSA:3.40.50.10490 14 500 4.0E-186 T 11-10-2018 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 491 508 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 Pfam PF00342 Phosphoglucose isomerase 53 529 1.0E-158 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 Gene3D G3DSA:3.40.50.10490 99 288 4.0E-186 T 11-10-2018 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 262 275 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 PRINTS PR00662 Glucose-6-phosphate isomerase signature 491 504 1.0E-51 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 PRINTS PR00662 Glucose-6-phosphate isomerase signature 144 163 1.0E-51 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 PRINTS PR00662 Glucose-6-phosphate isomerase signature 258 276 1.0E-51 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 PRINTS PR00662 Glucose-6-phosphate isomerase signature 459 477 1.0E-51 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 PRINTS PR00662 Glucose-6-phosphate isomerase signature 335 356 1.0E-51 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 PRINTS PR00662 Glucose-6-phosphate isomerase signature 477 491 1.0E-51 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 SUPERFAMILY SSF53697 8 535 3.61E-169 T 11-10-2018 dqs_1642 e765e4150f870bf9f2be24138f0ea8b8 543 Gene3D G3DSA:1.10.1390.10 501 535 1.0E-9 T 11-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 Pfam PF00072 Response regulator receiver domain 5 110 8.8E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 Pfam PF01339 CheB methylesterase 189 367 1.4E-61 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 PIRSF PIRSF000876 1 373 4.6E-131 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 Gene3D G3DSA:3.40.50.180 180 373 3.7E-74 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 SUPERFAMILY SSF52738 184 371 4.45E-70 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 372 39.433 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 Gene3D G3DSA:3.40.50.2300 2 132 4.3E-29 T 11-10-2018 dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 SMART SM00448 3 118 8.6E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1579 a87d5ab39e6dfe4ee6b0e93d499f2611 373 SUPERFAMILY SSF52172 1 112 3.56E-25 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0450 1127386da8ece8ace37307acd819ae8b 242 PIRSF PIRSF039085 1 241 2.7E-103 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 dqs_0450 1127386da8ece8ace37307acd819ae8b 242 SMART SM00382 26 213 1.5E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0450 1127386da8ece8ace37307acd819ae8b 242 Gene3D G3DSA:3.40.50.300 1 242 8.1E-74 T 11-10-2018 dqs_0450 1127386da8ece8ace37307acd819ae8b 242 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0450 1127386da8ece8ace37307acd819ae8b 242 SUPERFAMILY SSF52540 1 235 2.13E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0450 1127386da8ece8ace37307acd819ae8b 242 Pfam PF00005 ABC transporter 18 165 1.5E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3318 3499f46267751787616186d951b37649 688 Pfam PF10136 Site-specific recombinase 14 659 2.2E-241 T 11-10-2018 IPR011385 Putative site-specific recombinase Gcr dqs_3318 3499f46267751787616186d951b37649 688 PIRSF PIRSF015380 14 673 2.3E-168 T 11-10-2018 IPR011385 Putative site-specific recombinase Gcr dqs_2090 38ce8193a4794d779388cc2041d77f13 168 ProSitePatterns PS01117 MarR-type HTH domain signature. 81 115 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site dqs_2090 38ce8193a4794d779388cc2041d77f13 168 Gene3D G3DSA:1.10.10.10 12 155 4.5E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2090 38ce8193a4794d779388cc2041d77f13 168 SMART SM00347 42 142 9.8E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2090 38ce8193a4794d779388cc2041d77f13 168 SUPERFAMILY SSF46785 22 154 3.46E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2090 38ce8193a4794d779388cc2041d77f13 168 PRINTS PR00598 Bacterial regulatory protein MarR family signature 102 118 4.4E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2090 38ce8193a4794d779388cc2041d77f13 168 PRINTS PR00598 Bacterial regulatory protein MarR family signature 132 152 4.4E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2090 38ce8193a4794d779388cc2041d77f13 168 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 98 4.4E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2090 38ce8193a4794d779388cc2041d77f13 168 Pfam PF01047 MarR family 49 106 5.7E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 dqs_2580 9ccbe35afaa16af8fd0b98982544ca48 145 Gene3D G3DSA:3.30.450.150 2 143 2.2E-44 T 11-10-2018 IPR038084 GlcG-like domain superfamily dqs_2580 9ccbe35afaa16af8fd0b98982544ca48 145 Pfam PF03928 Haem-degrading 10 135 9.9E-34 T 11-10-2018 IPR005624 Haem-degrading dqs_2580 9ccbe35afaa16af8fd0b98982544ca48 145 SUPERFAMILY SSF143744 5 139 1.31E-39 T 11-10-2018 IPR038084 GlcG-like domain superfamily dqs_2825 1e76867a48938d1b973a1cd60c1f272a 320 SUPERFAMILY SSF158682 3 117 5.36E-15 T 11-10-2018 IPR029024 TerB-like dqs_2825 1e76867a48938d1b973a1cd60c1f272a 320 Gene3D G3DSA:1.10.3680.10 1 112 5.5E-10 T 11-10-2018 IPR029024 TerB-like dqs_2825 1e76867a48938d1b973a1cd60c1f272a 320 Pfam PF05099 Tellurite resistance protein TerB 5 111 1.1E-7 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 Gene3D G3DSA:3.40.50.300 135 316 5.4E-52 T 11-10-2018 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 Pfam PF00072 Response regulator receiver domain 8 117 4.5E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 SUPERFAMILY SSF52540 146 373 3.4E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 SUPERFAMILY SSF52172 5 181 3.13E-36 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 Gene3D G3DSA:1.10.10.60 380 443 1.8E-10 T 11-10-2018 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 Gene3D G3DSA:3.40.50.2300 4 131 3.1E-33 T 11-10-2018 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 Pfam PF00158 Sigma-54 interaction domain 147 312 2.0E-59 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 Pfam PF02954 Bacterial regulatory protein, Fis family 397 436 1.7E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 419 439 9.7E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 402 419 9.7E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 SUPERFAMILY SSF46689 358 438 7.77E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 Gene3D G3DSA:1.10.8.60 317 378 4.8E-15 T 11-10-2018 dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_2069 720ba960f55cdb6e58c3a10ec52e6edc 447 SMART SM00448 6 117 5.3E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3410 54139326b2adb96935af58beb1d0e782 642 SUPERFAMILY SSF52402 233 605 1.6E-81 T 11-10-2018 dqs_3410 54139326b2adb96935af58beb1d0e782 642 PIRSF PIRSF001589 1 640 7.0E-186 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 dqs_3410 54139326b2adb96935af58beb1d0e782 642 Pfam PF13537 Glutamine amidotransferase domain 50 168 1.8E-45 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain dqs_3410 54139326b2adb96935af58beb1d0e782 642 Gene3D G3DSA:3.60.20.10 3 185 1.1E-61 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3410 54139326b2adb96935af58beb1d0e782 642 Pfam PF00733 Asparagine synthase 241 621 5.3E-96 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 dqs_3410 54139326b2adb96935af58beb1d0e782 642 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 557 5.2E-148 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 dqs_3410 54139326b2adb96935af58beb1d0e782 642 SUPERFAMILY SSF56235 1 224 1.2E-66 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3569 13a2a6e95b683beaba7706a16a5f2cac 115 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 57 109 1.6E-17 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 dqs_3569 13a2a6e95b683beaba7706a16a5f2cac 115 Gene3D G3DSA:1.20.5.1030 54 111 1.8E-16 T 11-10-2018 IPR038379 SecE superfamily dqs_3569 13a2a6e95b683beaba7706a16a5f2cac 115 Hamap MF_00422 Protein translocase subunit SecE [secE]. 54 111 11.378 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3569 13a2a6e95b683beaba7706a16a5f2cac 115 PRINTS PR01650 Bacterial translocase SecE signature 53 73 8.4E-13 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 dqs_3569 13a2a6e95b683beaba7706a16a5f2cac 115 PRINTS PR01650 Bacterial translocase SecE signature 32 53 8.4E-13 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 dqs_3569 13a2a6e95b683beaba7706a16a5f2cac 115 PRINTS PR01650 Bacterial translocase SecE signature 77 97 8.4E-13 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 dqs_3569 13a2a6e95b683beaba7706a16a5f2cac 115 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 58 107 3.8E-19 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3478 5b09d262bec7b61b604feb3dfade74d1 77 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 73 23.003 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 dqs_3478 5b09d262bec7b61b604feb3dfade74d1 77 Pfam PF02416 mttA/Hcf106 family 5 49 3.8E-14 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 dqs_3478 5b09d262bec7b61b604feb3dfade74d1 77 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 6.5E-23 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 dqs_2952 ce6303ab2f7ae5372c32b79851ad0f74 148 Gene3D G3DSA:2.30.30.40 82 144 1.5E-7 T 11-10-2018 dqs_2952 ce6303ab2f7ae5372c32b79851ad0f74 148 Pfam PF06347 Bacterial SH3 domain 92 147 2.3E-11 T 11-10-2018 IPR010466 Protein of unknown function DUF1058 dqs_2952 ce6303ab2f7ae5372c32b79851ad0f74 148 Pfam PF06347 Bacterial SH3 domain 31 82 7.7E-11 T 11-10-2018 IPR010466 Protein of unknown function DUF1058 dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 132 298 1.3E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 SUPERFAMILY SSF55073 141 299 1.33E-46 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 Gene3D G3DSA:3.40.50.2300 4 128 4.8E-36 T 11-10-2018 dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 Gene3D G3DSA:3.30.70.270 129 298 6.5E-55 T 11-10-2018 dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 Pfam PF00072 Response regulator receiver domain 8 114 1.0E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 SMART SM00448 6 119 2.2E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 Pfam PF00990 Diguanylate cyclase, GGDEF domain 138 296 9.0E-47 T 11-10-2018 IPR000160 GGDEF domain dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 SUPERFAMILY SSF52172 5 140 2.42E-39 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2547 d6f470603557e92b6e5dc44b68bcede2 301 SMART SM00267 124 300 4.1E-58 T 11-10-2018 IPR000160 GGDEF domain dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 Gene3D G3DSA:3.60.150.10 1 363 1.5E-148 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 TIGRFAM TIGR00033 aroC: chorismate synthase 11 350 8.9E-137 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 SUPERFAMILY SSF103263 4 352 7.46E-147 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 PIRSF PIRSF001456 3 363 1.2E-132 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 Pfam PF01264 Chorismate synthase 10 345 4.4E-135 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1144 d41b0e320c49f4ff3f3f66dd2b9097c7 378 Hamap MF_00300 Chorismate synthase [aroC]. 10 354 36.355 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 dqs_1515 7c0bc58b3f4a3497d255887f3da78234 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 254 7.1E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_1515 7c0bc58b3f4a3497d255887f3da78234 259 Gene3D G3DSA:1.10.3720.10 39 257 3.8E-26 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1515 7c0bc58b3f4a3497d255887f3da78234 259 SUPERFAMILY SSF161098 8 247 5.49E-31 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1515 7c0bc58b3f4a3497d255887f3da78234 259 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 2 255 8.1E-79 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 dqs_1780 b3163902bca7db87e4cc52cd89b00fa9 146 Pfam PF06676 Protein of unknown function (DUF1178) 1 141 4.7E-45 T 11-10-2018 IPR009562 Protein of unknown function DUF1178 dqs_1780 b3163902bca7db87e4cc52cd89b00fa9 146 PIRSF PIRSF032131 1 146 2.4E-41 T 11-10-2018 IPR009562 Protein of unknown function DUF1178 dqs_1527 39b49c953824f1e998ea9b4b4cbf8bd7 349 Pfam PF00146 NADH dehydrogenase 24 337 1.6E-125 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1527 39b49c953824f1e998ea9b4b4cbf8bd7 349 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 229 242 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1527 39b49c953824f1e998ea9b4b4cbf8bd7 349 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 17 344 25.013 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1527 39b49c953824f1e998ea9b4b4cbf8bd7 349 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 63 78 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 Pfam PF09397 Ftsk gamma domain 696 756 1.7E-25 T 11-10-2018 IPR018541 FtsK gamma domain dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 SMART SM00843 694 759 7.5E-38 T 11-10-2018 IPR018541 FtsK gamma domain dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 Gene3D G3DSA:1.10.10.10 690 755 3.0E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 18 191 6.3E-45 T 11-10-2018 IPR025199 DNA translocase FtsK, 4TM region dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 Gene3D G3DSA:3.40.50.300 377 675 6.2E-117 T 11-10-2018 dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 SUPERFAMILY SSF52540 367 661 1.16E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 Pfam PF01580 FtsK/SpoIIIE family 380 589 5.4E-66 T 11-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 SUPERFAMILY SSF46785 694 759 2.72E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1487 8572b9d09be0576064ac128ab53cc4cc 762 Gene3D G3DSA:3.30.980.40 272 376 2.0E-29 T 11-10-2018 dqs_2593 2e72215f0f354f1e120449ed822d2518 353 Pfam PF01966 HD domain 179 299 1.9E-16 T 11-10-2018 IPR006674 HD domain dqs_2593 2e72215f0f354f1e120449ed822d2518 353 SUPERFAMILY SSF109604 158 340 2.17E-40 T 11-10-2018 dqs_2593 2e72215f0f354f1e120449ed822d2518 353 Pfam PF00072 Response regulator receiver domain 11 123 2.2E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2593 2e72215f0f354f1e120449ed822d2518 353 SUPERFAMILY SSF52172 8 156 4.7E-34 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2593 2e72215f0f354f1e120449ed822d2518 353 Gene3D G3DSA:3.40.50.2300 5 150 4.1E-33 T 11-10-2018 dqs_2593 2e72215f0f354f1e120449ed822d2518 353 SMART SM00448 9 123 1.1E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2593 2e72215f0f354f1e120449ed822d2518 353 SMART SM00471 172 309 1.4E-6 T 11-10-2018 IPR003607 HD/PDEase domain dqs_2593 2e72215f0f354f1e120449ed822d2518 353 Gene3D G3DSA:1.10.3210.10 151 352 2.7E-74 T 11-10-2018 dqs_0711 a5cdf7e05036bafc8d2e38e5e8ed6b4f 256 SMART SM00382 33 214 2.2E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0711 a5cdf7e05036bafc8d2e38e5e8ed6b4f 256 Gene3D G3DSA:3.40.50.300 2 241 3.6E-55 T 11-10-2018 dqs_0711 a5cdf7e05036bafc8d2e38e5e8ed6b4f 256 SUPERFAMILY SSF52540 7 226 2.4E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0711 a5cdf7e05036bafc8d2e38e5e8ed6b4f 256 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0711 a5cdf7e05036bafc8d2e38e5e8ed6b4f 256 Pfam PF00005 ABC transporter 25 166 6.8E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 233 323 1.0E-18 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 TIGRFAM TIGR00433 bioB: biotin synthase 27 323 2.0E-120 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 Gene3D G3DSA:3.20.20.70 17 326 9.6E-126 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 PIRSF PIRSF001619 3 326 1.6E-131 T 11-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 Hamap MF_01694 Biotin synthase [bioB]. 18 326 41.49 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 Pfam PF04055 Radical SAM superfamily 63 209 1.4E-17 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 SUPERFAMILY SSF102114 18 324 1.96E-90 T 11-10-2018 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 SMART SM00876 233 325 1.2E-43 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 dqs_2956 d94b8d5307c492e7ca2cca08bf83e1d4 326 SMART SM00729 56 268 1.1E-40 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_1999 cd868f12a8efee0875846d3b994f184f 118 Gene3D G3DSA:3.10.20.560 16 118 2.6E-40 T 11-10-2018 dqs_1999 cd868f12a8efee0875846d3b994f184f 118 Pfam PF04663 Phenol hydroxylase conserved region 14 79 3.9E-31 T 11-10-2018 IPR006756 Phenol hydroxylase KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 dqs_0171 f1ac040b8235ca2662a5dde43f71d51b 245 Gene3D G3DSA:3.40.50.150 28 245 2.8E-65 T 11-10-2018 dqs_0171 f1ac040b8235ca2662a5dde43f71d51b 245 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 13 244 35.561 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 dqs_0171 f1ac040b8235ca2662a5dde43f71d51b 245 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 33 48 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 dqs_0171 f1ac040b8235ca2662a5dde43f71d51b 245 SUPERFAMILY SSF53335 1 235 7.03E-46 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0171 f1ac040b8235ca2662a5dde43f71d51b 245 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 22 244 2.7E-74 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 dqs_0171 f1ac040b8235ca2662a5dde43f71d51b 245 Pfam PF01209 ubiE/COQ5 methyltransferase family 17 244 4.8E-86 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 dqs_0171 f1ac040b8235ca2662a5dde43f71d51b 245 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 153 167 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 dqs_3700 6d5c8d1859cfa8cb18ebd2b1ec88c941 197 SUPERFAMILY SSF52540 21 196 1.72E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3700 6d5c8d1859cfa8cb18ebd2b1ec88c941 197 Gene3D G3DSA:3.40.50.300 20 196 2.6E-53 T 11-10-2018 dqs_3700 6d5c8d1859cfa8cb18ebd2b1ec88c941 197 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 21 195 1.7E-55 T 11-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 dqs_3700 6d5c8d1859cfa8cb18ebd2b1ec88c941 197 PIRSF PIRSF006135 18 197 9.6E-51 T 11-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 dqs_3111 a7cac9f60888dfac9306f5cd83563401 270 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 36 250 2.4E-66 T 11-10-2018 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier dqs_3111 a7cac9f60888dfac9306f5cd83563401 270 Gene3D G3DSA:2.60.40.2470 21 145 3.1E-25 T 11-10-2018 IPR038162 Ig-like SoxY domain superfamily dqs_3111 a7cac9f60888dfac9306f5cd83563401 270 Pfam PF08770 Sulphur oxidation protein SoxZ 177 254 7.0E-8 T 11-10-2018 IPR014880 Sulphur oxidation protein SoxZ dqs_3111 a7cac9f60888dfac9306f5cd83563401 270 Pfam PF13501 Sulfur oxidation protein SoxY 41 145 3.3E-25 T 11-10-2018 IPR032711 Ig-like SoxY domain dqs_3111 a7cac9f60888dfac9306f5cd83563401 270 SUPERFAMILY SSF81296 163 254 1.54E-16 T 11-10-2018 IPR014756 Immunoglobulin E-set dqs_3111 a7cac9f60888dfac9306f5cd83563401 270 Gene3D G3DSA:2.60.40.10 162 257 3.8E-8 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_0558 c164620c232d77338d341262648b572f 106 PIRSF PIRSF005790 1 106 7.9E-35 T 11-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 dqs_0558 c164620c232d77338d341262648b572f 106 Pfam PF03206 Nitrogen fixation protein NifW 7 104 5.3E-36 T 11-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 dqs_0558 c164620c232d77338d341262648b572f 106 Hamap MF_00529 Nitrogenase-stabilizing/protective protein NifW [nifW]. 4 105 22.39 T 11-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 dqs_0460 59449e4802f65857bccf34614492a3d3 588 Pfam PF00999 Sodium/hydrogen exchanger family 25 400 1.7E-60 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 dqs_0460 59449e4802f65857bccf34614492a3d3 588 SUPERFAMILY SSF51735 428 566 8.53E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0460 59449e4802f65857bccf34614492a3d3 588 Pfam PF02254 TrkA-N domain 432 545 5.0E-24 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 dqs_0460 59449e4802f65857bccf34614492a3d3 588 Gene3D G3DSA:3.40.50.720 429 587 1.7E-38 T 11-10-2018 dqs_0460 59449e4802f65857bccf34614492a3d3 588 Gene3D G3DSA:1.20.1530.20 16 407 2.9E-79 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily dqs_1588 dd5d77470ffd645c4441230007f9b687 260 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1588 dd5d77470ffd645c4441230007f9b687 260 Gene3D G3DSA:3.30.2350.10 1 223 3.4E-59 T 11-10-2018 dqs_1588 dd5d77470ffd645c4441230007f9b687 260 SUPERFAMILY SSF55120 2 237 9.6E-58 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1588 dd5d77470ffd645c4441230007f9b687 260 Pfam PF00849 RNA pseudouridylate synthase 10 170 3.1E-36 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_0805 9bfb14404cf22eaf6c723e8131a5c786 206 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 4 195 26.74 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 dqs_0805 9bfb14404cf22eaf6c723e8131a5c786 206 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 6 189 9.4E-46 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 dqs_0805 9bfb14404cf22eaf6c723e8131a5c786 206 Pfam PF01121 Dephospho-CoA kinase 5 182 3.4E-58 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 dqs_0805 9bfb14404cf22eaf6c723e8131a5c786 206 Gene3D G3DSA:3.40.50.300 1 200 1.5E-64 T 11-10-2018 dqs_0805 9bfb14404cf22eaf6c723e8131a5c786 206 SUPERFAMILY SSF52540 3 198 2.11E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3769 31172328b6f7448b7cb845d48634043f 420 Gene3D G3DSA:3.90.640.10 221 233 7.5E-38 T 11-10-2018 dqs_3769 31172328b6f7448b7cb845d48634043f 420 Gene3D G3DSA:3.30.420.40 346 403 2.1E-13 T 11-10-2018 dqs_3769 31172328b6f7448b7cb845d48634043f 420 PRINTS PR00301 70kDa heat shock protein signature 189 199 1.6E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_3769 31172328b6f7448b7cb845d48634043f 420 PRINTS PR00301 70kDa heat shock protein signature 123 143 1.6E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_3769 31172328b6f7448b7cb845d48634043f 420 PRINTS PR00301 70kDa heat shock protein signature 7 20 1.6E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_3769 31172328b6f7448b7cb845d48634043f 420 PRINTS PR00301 70kDa heat shock protein signature 35 47 1.6E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_3769 31172328b6f7448b7cb845d48634043f 420 SUPERFAMILY SSF53067 9 175 3.89E-31 T 11-10-2018 dqs_3769 31172328b6f7448b7cb845d48634043f 420 Gene3D G3DSA:3.30.420.40 10 175 7.5E-38 T 11-10-2018 dqs_3769 31172328b6f7448b7cb845d48634043f 420 Pfam PF00012 Hsp70 protein 89 230 4.8E-11 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_3769 31172328b6f7448b7cb845d48634043f 420 Pfam PF00012 Hsp70 protein 303 392 1.2E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 dqs_3769 31172328b6f7448b7cb845d48634043f 420 SUPERFAMILY SSF53067 178 417 2.25E-30 T 11-10-2018 dqs_3769 31172328b6f7448b7cb845d48634043f 420 Gene3D G3DSA:3.30.420.40 177 220 7.5E-38 T 11-10-2018 dqs_3769 31172328b6f7448b7cb845d48634043f 420 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 373 387 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 dqs_3769 31172328b6f7448b7cb845d48634043f 420 Gene3D G3DSA:3.90.640.10 297 345 2.1E-13 T 11-10-2018 dqs_1582 83142dfe263d806e909458e085e16e70 318 SMART SM00448 183 308 7.4E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1582 83142dfe263d806e909458e085e16e70 318 Gene3D G3DSA:3.40.50.2300 181 317 6.3E-25 T 11-10-2018 dqs_1582 83142dfe263d806e909458e085e16e70 318 Gene3D G3DSA:2.40.50.180 48 157 1.2E-30 T 11-10-2018 dqs_1582 83142dfe263d806e909458e085e16e70 318 SUPERFAMILY SSF50341 23 164 4.71E-33 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_1582 83142dfe263d806e909458e085e16e70 318 SMART SM00260 24 162 3.4E-35 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1582 83142dfe263d806e909458e085e16e70 318 Gene3D G3DSA:2.30.30.40 31 156 1.2E-30 T 11-10-2018 dqs_1582 83142dfe263d806e909458e085e16e70 318 Pfam PF01584 CheW-like domain 28 163 8.0E-37 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1582 83142dfe263d806e909458e085e16e70 318 Pfam PF00072 Response regulator receiver domain 185 306 5.4E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1582 83142dfe263d806e909458e085e16e70 318 SUPERFAMILY SSF52172 181 316 7.97E-25 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1582 83142dfe263d806e909458e085e16e70 318 PIRSF PIRSF002867 8 316 5.0E-94 T 11-10-2018 IPR024181 Chemotaxis response regulator CheV dqs_0874 43b842056af520b203ec742a7bf5255f 211 Pfam PF13432 Tetratricopeptide repeat 109 159 4.5E-5 T 11-10-2018 dqs_0874 43b842056af520b203ec742a7bf5255f 211 Pfam PF13432 Tetratricopeptide repeat 29 93 7.6E-12 T 11-10-2018 dqs_0874 43b842056af520b203ec742a7bf5255f 211 SUPERFAMILY SSF48452 29 182 1.26E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0874 43b842056af520b203ec742a7bf5255f 211 Gene3D G3DSA:1.25.40.10 29 104 7.6E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0874 43b842056af520b203ec742a7bf5255f 211 Gene3D G3DSA:1.25.40.10 105 207 1.3E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0874 43b842056af520b203ec742a7bf5255f 211 SMART SM00028 125 158 0.32 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0874 43b842056af520b203ec742a7bf5255f 211 SMART SM00028 59 92 2.8 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0874 43b842056af520b203ec742a7bf5255f 211 SMART SM00028 25 58 37.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2260 7e67d23723dcd03ebf145d41986b4551 471 Pfam PF00990 Diguanylate cyclase, GGDEF domain 307 464 4.0E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_2260 7e67d23723dcd03ebf145d41986b4551 471 SMART SM00267 296 468 9.8E-64 T 11-10-2018 IPR000160 GGDEF domain dqs_2260 7e67d23723dcd03ebf145d41986b4551 471 SUPERFAMILY SSF55073 312 466 5.1E-48 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2260 7e67d23723dcd03ebf145d41986b4551 471 Gene3D G3DSA:3.30.70.270 294 467 2.1E-58 T 11-10-2018 dqs_2260 7e67d23723dcd03ebf145d41986b4551 471 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 303 465 3.1E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_2453 984a0055081523411a083d8a50274466 356 SUPERFAMILY SSF53756 9 351 3.07E-63 T 11-10-2018 dqs_2453 984a0055081523411a083d8a50274466 356 Gene3D G3DSA:3.40.50.2000 70 349 2.7E-51 T 11-10-2018 dqs_2453 984a0055081523411a083d8a50274466 356 Pfam PF00534 Glycosyl transferases group 1 166 330 1.6E-31 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_2453 984a0055081523411a083d8a50274466 356 Gene3D G3DSA:3.40.50.2000 150 336 2.7E-51 T 11-10-2018 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.224 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.6E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.6E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.6E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.6E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.6E-37 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 11-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 Pfam PF00334 Nucleoside diphosphate kinase 4 135 3.8E-55 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 SUPERFAMILY SSF54919 1 139 7.99E-58 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 SMART SM00562 3 140 7.9E-81 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0995 fc9d16b12317d0a96ad2290b2643e377 141 Gene3D G3DSA:3.30.70.141 1 141 2.9E-60 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 198 405 1.0E-15 T 11-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 Pfam PF13098 Thioredoxin-like domain 506 600 1.4E-10 T 11-10-2018 IPR012336 Thioredoxin-like fold dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 2 604 34.381 T 11-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 Gene3D G3DSA:3.40.30.10 481 603 3.3E-29 T 11-10-2018 dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 SUPERFAMILY SSF74863 22 138 5.49E-30 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 Gene3D G3DSA:2.60.40.1250 14 152 1.2E-34 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 Pfam PF11412 Disulphide bond corrector protein DsbC 24 135 1.7E-28 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 ProSitePatterns PS00194 Thioredoxin family active site. 512 530 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_0334 bc0cf9ceeeaa0e55cc8469cd51c4e7c0 606 SUPERFAMILY SSF52833 499 601 1.5E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1199 29705d45df5d6f747bbbb0fbaedbe863 302 Pfam PF01476 LysM domain 56 98 1.6E-10 T 11-10-2018 IPR018392 LysM domain dqs_1199 29705d45df5d6f747bbbb0fbaedbe863 302 SUPERFAMILY SSF54106 55 98 1.7E-10 T 11-10-2018 dqs_1199 29705d45df5d6f747bbbb0fbaedbe863 302 SUPERFAMILY SSF51261 144 299 2.56E-47 T 11-10-2018 IPR011055 Duplicated hybrid motif dqs_1199 29705d45df5d6f747bbbb0fbaedbe863 302 Pfam PF01551 Peptidase family M23 202 295 9.6E-31 T 11-10-2018 IPR016047 Peptidase M23 dqs_1199 29705d45df5d6f747bbbb0fbaedbe863 302 Gene3D G3DSA:3.10.350.10 44 105 4.9E-15 T 11-10-2018 IPR036779 LysM domain superfamily dqs_1199 29705d45df5d6f747bbbb0fbaedbe863 302 SMART SM00257 55 99 4.4E-10 T 11-10-2018 IPR018392 LysM domain dqs_1199 29705d45df5d6f747bbbb0fbaedbe863 302 Gene3D G3DSA:2.70.70.10 168 300 3.3E-36 T 11-10-2018 IPR011055 Duplicated hybrid motif dqs_3844 881a487fd5ce4d039516e354c3443b64 403 Gene3D G3DSA:3.40.50.12170 5 402 5.0E-105 T 11-10-2018 dqs_3844 881a487fd5ce4d039516e354c3443b64 403 PIRSF PIRSF016719 1 403 8.8E-105 T 11-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 dqs_3844 881a487fd5ce4d039516e354c3443b64 403 Gene3D G3DSA:3.90.1150.140 223 387 5.0E-105 T 11-10-2018 dqs_3844 881a487fd5ce4d039516e354c3443b64 403 Pfam PF07075 Protein of unknown function (DUF1343) 24 402 1.4E-108 T 11-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 Gene3D G3DSA:3.40.50.720 5 361 8.0E-132 T 11-10-2018 dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 SMART SM01003 6 138 3.0E-60 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 SUPERFAMILY SSF52283 4 169 4.08E-44 T 11-10-2018 dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 143 364 6.7E-69 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 SMART SM01002 147 309 2.2E-81 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 6 138 3.7E-36 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 171 196 - T 11-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 Gene3D G3DSA:3.40.50.720 138 316 8.0E-132 T 11-10-2018 dqs_1104 3d99ba6e93178d8fe92688ed3ef4f516 373 SUPERFAMILY SSF51735 138 307 6.9E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2111 81e3e2c0342194be743e4313c33b3aac 465 Gene3D G3DSA:3.90.1300.10 7 465 2.0E-129 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2111 81e3e2c0342194be743e4313c33b3aac 465 Pfam PF01425 Amidase 30 446 1.3E-103 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2111 81e3e2c0342194be743e4313c33b3aac 465 SUPERFAMILY SSF75304 8 464 3.66E-127 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2111 81e3e2c0342194be743e4313c33b3aac 465 ProSitePatterns PS00571 Amidases signature. 155 186 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 dqs_2241 d18de17d2e5aeb89fec52e6fa439fdb0 144 SUPERFAMILY SSF75420 4 76 1.83E-17 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily dqs_2241 d18de17d2e5aeb89fec52e6fa439fdb0 144 Pfam PF02576 RimP N-terminal domain 8 76 3.1E-20 T 11-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal dqs_2241 d18de17d2e5aeb89fec52e6fa439fdb0 144 SUPERFAMILY SSF74942 77 144 2.35E-17 T 11-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily dqs_2241 d18de17d2e5aeb89fec52e6fa439fdb0 144 Pfam PF17384 RimP C-terminal SH3 domain 79 144 1.9E-15 T 11-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal dqs_2241 d18de17d2e5aeb89fec52e6fa439fdb0 144 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 3 144 23.463 T 11-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 dqs_2241 d18de17d2e5aeb89fec52e6fa439fdb0 144 Gene3D G3DSA:3.30.300.70 1 73 3.9E-14 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily dqs_2036 c945e1832b45fa8a7ba357b22719a0a2 837 Pfam PF02687 FtsX-like permease family 283 383 1.9E-9 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_2036 c945e1832b45fa8a7ba357b22719a0a2 837 Pfam PF02687 FtsX-like permease family 735 824 4.9E-13 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_2036 c945e1832b45fa8a7ba357b22719a0a2 837 Pfam PF12704 MacB-like periplasmic core domain 483 677 4.7E-9 T 11-10-2018 IPR025857 MacB-like periplasmic core domain dqs_2871 9125de0203f8ff59754c338d4148425d 245 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 170 240 5.4E-23 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain dqs_2871 9125de0203f8ff59754c338d4148425d 245 SUPERFAMILY SSF117143 77 203 7.72E-19 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like dqs_2871 9125de0203f8ff59754c338d4148425d 245 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 222 3.6E-56 T 11-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 dqs_2871 9125de0203f8ff59754c338d4148425d 245 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 6.4E-34 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G dqs_3285 f760bcebee312575dd5147233138c34d 196 SUPERFAMILY SSF88946 24 103 1.06E-6 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_3285 f760bcebee312575dd5147233138c34d 196 Pfam PF08281 Sigma-70, region 4 134 181 3.2E-16 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_3285 f760bcebee312575dd5147233138c34d 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 187 1.4E-17 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_3285 f760bcebee312575dd5147233138c34d 196 Gene3D G3DSA:1.10.10.10 108 195 2.2E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3285 f760bcebee312575dd5147233138c34d 196 SUPERFAMILY SSF88659 126 189 8.97E-16 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_1745 5185903ae5f068e5ed9189f9c49502fb 161 Pfam PF02620 Uncharacterized ACR, COG1399 54 155 5.4E-15 T 11-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD dqs_1463 7fd61b1d71a98f0425ccbd34d70b03ed 196 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 1 170 3.4E-80 T 11-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO dqs_1463 7fd61b1d71a98f0425ccbd34d70b03ed 196 SUPERFAMILY SSF46626 1 188 4.05E-26 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1463 7fd61b1d71a98f0425ccbd34d70b03ed 196 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 1 172 1.9E-73 T 11-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO dqs_1463 7fd61b1d71a98f0425ccbd34d70b03ed 196 Gene3D G3DSA:1.10.760.10 35 196 6.5E-66 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1427 0d18f5b10336352faaaea363aadda43a 905 Pfam PF05954 Phage late control gene D protein (GPD) 51 374 2.0E-77 T 11-10-2018 dqs_1427 0d18f5b10336352faaaea363aadda43a 905 SUPERFAMILY SSF69349 508 569 2.28E-6 T 11-10-2018 dqs_1427 0d18f5b10336352faaaea363aadda43a 905 SUPERFAMILY SSF69255 423 518 3.14E-30 T 11-10-2018 dqs_1427 0d18f5b10336352faaaea363aadda43a 905 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 683 829 3.8E-34 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal dqs_1427 0d18f5b10336352faaaea363aadda43a 905 Gene3D G3DSA:3.55.50.10 119 224 3.6E-73 T 11-10-2018 dqs_1427 0d18f5b10336352faaaea363aadda43a 905 Gene3D G3DSA:2.40.50.230 416 522 3.5E-40 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily dqs_1427 0d18f5b10336352faaaea363aadda43a 905 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 47 566 3.0E-111 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset dqs_1427 0d18f5b10336352faaaea363aadda43a 905 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 546 653 3.8E-36 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain dqs_1427 0d18f5b10336352faaaea363aadda43a 905 SUPERFAMILY SSF69279 227 376 4.59E-12 T 11-10-2018 dqs_1427 0d18f5b10336352faaaea363aadda43a 905 SUPERFAMILY SSF69279 40 219 2.89E-42 T 11-10-2018 dqs_1427 0d18f5b10336352faaaea363aadda43a 905 Gene3D G3DSA:3.30.1920.30 257 326 3.6E-73 T 11-10-2018 dqs_1427 0d18f5b10336352faaaea363aadda43a 905 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 49 573 1.4E-88 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein dqs_1427 0d18f5b10336352faaaea363aadda43a 905 Gene3D G3DSA:2.30.110.50 42 372 3.6E-73 T 11-10-2018 dqs_2783 4379d1717448f25fbe2d70d88e1621c3 382 SMART SM00267 210 382 7.3E-63 T 11-10-2018 IPR000160 GGDEF domain dqs_2783 4379d1717448f25fbe2d70d88e1621c3 382 SUPERFAMILY SSF55073 226 380 3.4E-50 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2783 4379d1717448f25fbe2d70d88e1621c3 382 Pfam PF00990 Diguanylate cyclase, GGDEF domain 221 378 1.1E-45 T 11-10-2018 IPR000160 GGDEF domain dqs_2783 4379d1717448f25fbe2d70d88e1621c3 382 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 217 379 3.9E-54 T 11-10-2018 IPR000160 GGDEF domain dqs_2783 4379d1717448f25fbe2d70d88e1621c3 382 Gene3D G3DSA:3.30.70.270 215 381 5.6E-60 T 11-10-2018 dqs_2148 69513aadb4ef1a696bd97c96d37573c3 253 Pfam PF00005 ABC transporter 25 171 1.6E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2148 69513aadb4ef1a696bd97c96d37573c3 253 SMART SM00382 34 222 2.7E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2148 69513aadb4ef1a696bd97c96d37573c3 253 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 242 4.4E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_2148 69513aadb4ef1a696bd97c96d37573c3 253 Gene3D G3DSA:3.40.50.300 5 244 1.8E-57 T 11-10-2018 dqs_2148 69513aadb4ef1a696bd97c96d37573c3 253 SUPERFAMILY SSF52540 9 242 4.26E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2148 69513aadb4ef1a696bd97c96d37573c3 253 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 79 896 0.0 T 11-10-2018 IPR026362 DEXH box helicase, DNA ligase-associated dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 Pfam PF00271 Helicase conserved C-terminal domain 333 432 5.0E-11 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 Pfam PF08494 DEAD/H associated 681 867 3.0E-43 T 11-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 Pfam PF00270 DEAD/DEAH box helicase 93 272 6.9E-18 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 Gene3D G3DSA:3.40.50.300 79 288 7.6E-36 T 11-10-2018 dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 SMART SM00487 87 304 3.2E-15 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 SMART SM00490 350 431 7.5E-4 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 PIRSF PIRSF037307 71 905 2.3E-133 T 11-10-2018 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 Gene3D G3DSA:3.40.50.300 322 497 4.5E-18 T 11-10-2018 dqs_0456 fbabc4bce43cd7046c2edacfb5b5c5ff 920 SUPERFAMILY SSF52540 102 445 4.25E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0283 0ba36a1407fed6d7e3fab363681adfd2 424 SUPERFAMILY SSF56954 6 416 1.24E-39 T 11-10-2018 dqs_0283 0ba36a1407fed6d7e3fab363681adfd2 424 Gene3D G3DSA:1.20.1600.10 38 413 8.8E-35 T 11-10-2018 dqs_0283 0ba36a1407fed6d7e3fab363681adfd2 424 Pfam PF02321 Outer membrane efflux protein 237 411 1.9E-9 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0283 0ba36a1407fed6d7e3fab363681adfd2 424 Pfam PF02321 Outer membrane efflux protein 38 214 1.0E-8 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_1919 e2775e20b7e799edc87e19a96fb362f5 245 Gene3D G3DSA:1.20.5.1230 91 243 6.0E-9 T 11-10-2018 dqs_1919 e2775e20b7e799edc87e19a96fb362f5 245 SUPERFAMILY SSF58113 108 231 4.32E-8 T 11-10-2018 dqs_1711 c4748675ac4e15994a121b6a6f18085a 154 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 7 148 47.097 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 dqs_1711 c4748675ac4e15994a121b6a6f18085a 154 Pfam PF14437 MafB19-like deaminase 2 147 3.3E-29 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 dqs_1711 c4748675ac4e15994a121b6a6f18085a 154 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 89 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 dqs_1711 c4748675ac4e15994a121b6a6f18085a 154 SUPERFAMILY SSF53927 2 149 1.84E-56 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 dqs_1711 c4748675ac4e15994a121b6a6f18085a 154 Gene3D G3DSA:3.40.140.10 1 154 1.8E-61 T 11-10-2018 dqs_0100 5af10a2b1885e1b4bb87343c2127551d 153 PRINTS PR00608 Class II cytochrome C signature 140 151 2.8E-9 T 11-10-2018 IPR015984 Cytochrome c prime, subgroup dqs_0100 5af10a2b1885e1b4bb87343c2127551d 153 PRINTS PR00608 Class II cytochrome C signature 117 140 2.8E-9 T 11-10-2018 IPR015984 Cytochrome c prime, subgroup dqs_0100 5af10a2b1885e1b4bb87343c2127551d 153 SUPERFAMILY SSF47175 25 152 7.21E-38 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 dqs_0100 5af10a2b1885e1b4bb87343c2127551d 153 Pfam PF01322 Cytochrome C' 29 151 1.1E-34 T 11-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 dqs_0100 5af10a2b1885e1b4bb87343c2127551d 153 PIRSF PIRSF000027 10 153 2.6E-32 T 11-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 dqs_0100 5af10a2b1885e1b4bb87343c2127551d 153 Gene3D G3DSA:1.20.120.10 22 153 3.5E-35 T 11-10-2018 dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 SUPERFAMILY SSF51445 160 585 7.04E-127 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 Gene3D G3DSA:3.20.20.80 153 592 1.2E-172 T 11-10-2018 dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 16 104 6.1E-18 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 12 705 0.0 T 11-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 SUPERFAMILY SSF81296 12 120 5.6E-44 T 11-10-2018 IPR014756 Immunoglobulin E-set dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 Pfam PF00128 Alpha amylase, catalytic domain 201 303 1.3E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 Gene3D G3DSA:2.60.40.10 2 146 4.6E-49 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 SMART SM00642 171 578 4.6E-8 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 SUPERFAMILY SSF51011 600 706 2.37E-21 T 11-10-2018 dqs_1943 9e07ede6ccec4f66440258d98d2e3d5e 726 Gene3D G3DSA:2.60.40.1180 598 706 5.6E-14 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta dqs_2493 7f6151545f5667e946bffc98348998e9 336 Gene3D G3DSA:3.40.190.10 32 301 3.8E-136 T 11-10-2018 dqs_2493 7f6151545f5667e946bffc98348998e9 336 Pfam PF13531 Bacterial extracellular solute-binding protein 39 286 2.0E-44 T 11-10-2018 dqs_2493 7f6151545f5667e946bffc98348998e9 336 Gene3D G3DSA:3.40.190.10 120 331 3.8E-136 T 11-10-2018 dqs_2493 7f6151545f5667e946bffc98348998e9 336 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 25 332 9.1E-150 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 dqs_2493 7f6151545f5667e946bffc98348998e9 336 SUPERFAMILY SSF53850 25 333 2.18E-91 T 11-10-2018 dqs_2493 7f6151545f5667e946bffc98348998e9 336 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 151 159 - T 11-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 PRINTS PR00110 Alpha-amylase signature 92 103 1.6E-5 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 PRINTS PR00110 Alpha-amylase signature 193 204 1.6E-5 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 PRINTS PR00110 Alpha-amylase signature 316 328 1.6E-5 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 Gene3D G3DSA:3.20.20.80 171 476 6.8E-109 T 11-10-2018 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 Pfam PF16657 Maltogenic Amylase, C-terminal domain 476 538 2.5E-9 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 Gene3D G3DSA:3.20.20.80 1 109 7.1E-49 T 11-10-2018 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 SUPERFAMILY SSF51011 476 550 7.36E-12 T 11-10-2018 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 Gene3D G3DSA:3.90.400.10 110 170 1.5E-33 T 11-10-2018 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 Gene3D G3DSA:2.60.40.1180 477 551 1.4E-15 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 SMART SM00642 13 415 1.9E-155 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 Pfam PF00128 Alpha amylase, catalytic domain 28 372 3.2E-112 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_2440 d5a16ea54b6fc7eed3b999ee6e9ea878 553 SUPERFAMILY SSF51445 5 473 2.02E-156 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_2436 ae2c8508a71688bb058aa8ea8bf3417b 406 Pfam PF02661 Fic/DOC family 128 231 2.0E-15 T 11-10-2018 IPR003812 Fido domain dqs_2436 ae2c8508a71688bb058aa8ea8bf3417b 406 SUPERFAMILY SSF140931 123 301 1.11E-33 T 11-10-2018 IPR036597 Fido-like domain superfamily dqs_2436 ae2c8508a71688bb058aa8ea8bf3417b 406 Gene3D G3DSA:1.10.3290.10 41 311 1.2E-46 T 11-10-2018 IPR036597 Fido-like domain superfamily dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 Pfam PF00682 HMGL-like 8 264 3.0E-58 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 SUPERFAMILY SSF51569 5 276 2.75E-68 T 11-10-2018 dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 Gene3D G3DSA:1.10.8.60 277 344 1.6E-30 T 11-10-2018 dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 Pfam PF07836 DmpG-like communication domain 276 337 9.3E-30 T 11-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 Gene3D G3DSA:3.20.20.70 4 270 7.3E-86 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 344 216.116 T 11-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 6 338 8.9E-171 T 11-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 SUPERFAMILY SSF89000 290 339 1.02E-15 T 11-10-2018 dqs_2575 9df93d763a05405ee1fd57988ab8cc0f 346 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 274 336 2.0E-28 T 11-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2392 de11bd7aa07c036c7aa74926216d714d 329 SMART SM00342 235 321 1.6E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2392 de11bd7aa07c036c7aa74926216d714d 329 Pfam PF12833 Helix-turn-helix domain 241 322 4.9E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2392 de11bd7aa07c036c7aa74926216d714d 329 SUPERFAMILY SSF46689 221 269 3.37E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2392 de11bd7aa07c036c7aa74926216d714d 329 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 272 317 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_2392 de11bd7aa07c036c7aa74926216d714d 329 Gene3D G3DSA:1.10.10.60 219 325 2.0E-36 T 11-10-2018 dqs_2392 de11bd7aa07c036c7aa74926216d714d 329 SUPERFAMILY SSF46689 279 323 3.59E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 12 151 1.5E-28 T 11-10-2018 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 SUPERFAMILY SSF52833 7 174 4.25E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 SMART SM00928 476 521 1.7E-21 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 Gene3D G3DSA:3.40.30.10 72 168 2.2E-10 T 11-10-2018 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 325 340 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 205 375 6.2E-43 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 Gene3D G3DSA:1.10.10.1590 5 71 5.5E-10 T 11-10-2018 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 Gene3D G3DSA:1.20.1440.230 474 570 2.2E-26 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 478 559 4.0E-24 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 SUPERFAMILY SSF142984 399 469 4.32E-12 T 11-10-2018 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 Gene3D G3DSA:3.40.50.11540 210 389 8.8E-72 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 SUPERFAMILY SSF142019 191 398 2.62E-70 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 489 500 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 SUPERFAMILY SSF140490 473 563 4.84E-28 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1536 00444b7ff0779aba4b7346a83db55ccc 602 Gene3D G3DSA:3.10.20.600 390 472 5.3E-14 T 11-10-2018 dqs_1528 60c7bafebdd730f981328338440db4e3 161 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 18 139 6.1E-47 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1528 60c7bafebdd730f981328338440db4e3 161 Gene3D G3DSA:3.30.70.3270 35 161 2.7E-38 T 11-10-2018 dqs_1528 60c7bafebdd730f981328338440db4e3 161 SUPERFAMILY SSF54862 35 144 4.18E-25 T 11-10-2018 dqs_1528 60c7bafebdd730f981328338440db4e3 161 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 9 148 28.15 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1528 60c7bafebdd730f981328338440db4e3 161 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 101 112 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1528 60c7bafebdd730f981328338440db4e3 161 Pfam PF12838 4Fe-4S dicluster domain 61 115 1.3E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 Gene3D G3DSA:3.30.70.20 563 630 5.4E-11 T 11-10-2018 dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 600 611 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 203 214 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 Gene3D G3DSA:3.30.70.20 319 389 3.3E-11 T 11-10-2018 dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 Pfam PF13237 4Fe-4S dicluster domain 565 611 6.0E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 352 363 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 Gene3D G3DSA:3.30.70.20 181 265 6.9E-7 T 11-10-2018 dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 SUPERFAMILY SSF54862 198 685 7.77E-52 T 11-10-2018 dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 Pfam PF00037 4Fe-4S binding domain 198 218 8.2E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 Pfam PF00037 4Fe-4S binding domain 346 367 3.0E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3628 378a5814c54d5a0ff4253b1816930e54 701 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 569 580 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1635 1f9444d0bd285fc4453adc687b5072d5 769 Pfam PF13567 Domain of unknown function (DUF4131) 21 176 1.1E-34 T 11-10-2018 IPR025405 Domain of unknown function DUF4131 dqs_1635 1f9444d0bd285fc4453adc687b5072d5 769 Gene3D G3DSA:3.60.15.10 512 757 1.3E-51 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1635 1f9444d0bd285fc4453adc687b5072d5 769 SUPERFAMILY SSF56281 509 766 8.67E-43 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1635 1f9444d0bd285fc4453adc687b5072d5 769 Pfam PF12706 Beta-lactamase superfamily domain 535 664 1.2E-6 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_1635 1f9444d0bd285fc4453adc687b5072d5 769 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 242 421 2.6E-27 T 11-10-2018 IPR004477 ComEC/Rec2-related protein dqs_1635 1f9444d0bd285fc4453adc687b5072d5 769 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 136 742 9.5E-107 T 11-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 dqs_1635 1f9444d0bd285fc4453adc687b5072d5 769 SMART SM00849 521 713 3.5E-8 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_1635 1f9444d0bd285fc4453adc687b5072d5 769 Pfam PF03772 Competence protein 221 482 2.9E-61 T 11-10-2018 IPR004477 ComEC/Rec2-related protein dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 Gene3D G3DSA:2.40.240.10 1 95 4.3E-31 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 100 187 5.8E-28 T 11-10-2018 IPR020057 Ribosomal protein L25, beta domain dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 3 95 21.67 T 11-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 SUPERFAMILY SSF50715 1 193 4.88E-54 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 175 1.8E-43 T 11-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 5 95 3.0E-30 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 3 186 30.065 T 11-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 Pfam PF01386 Ribosomal L25p family 6 92 7.1E-25 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 dqs_0828 9966b0ae16a1d2a71dc9702f1ac7bee3 200 Gene3D G3DSA:2.170.120.20 97 193 1.8E-25 T 11-10-2018 IPR037121 Ribosomal protein L25, C-terminal dqs_0487 5a0a98cab5a6ea43a57edcf63f4024d1 126 SUPERFAMILY SSF55298 2 125 2.83E-46 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 dqs_0487 5a0a98cab5a6ea43a57edcf63f4024d1 126 Pfam PF01042 Endoribonuclease L-PSP 9 124 7.5E-41 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 dqs_0487 5a0a98cab5a6ea43a57edcf63f4024d1 126 Gene3D G3DSA:3.30.1330.40 3 125 1.8E-52 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 dqs_0487 5a0a98cab5a6ea43a57edcf63f4024d1 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 1.2E-50 T 11-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 dqs_3984 2a03acf2633ba3a85146ee523e75d910 272 Gene3D G3DSA:3.40.190.10 32 256 8.5E-88 T 11-10-2018 dqs_3984 2a03acf2633ba3a85146ee523e75d910 272 Pfam PF12849 PBP superfamily domain 27 248 1.1E-28 T 11-10-2018 IPR024370 PBP domain dqs_3984 2a03acf2633ba3a85146ee523e75d910 272 Gene3D G3DSA:3.40.190.10 107 219 8.5E-88 T 11-10-2018 dqs_3984 2a03acf2633ba3a85146ee523e75d910 272 SUPERFAMILY SSF53850 35 258 8.5E-35 T 11-10-2018 dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 Gene3D G3DSA:1.20.5.440 92 134 3.8E-15 T 11-10-2018 dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 8.0E-43 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 Gene3D G3DSA:2.60.15.10 3 91 1.4E-29 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 SUPERFAMILY SSF46604 89 138 1.36E-13 T 11-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 90 134 3.4E-10 T 11-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-36 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 132 21.811 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 SUPERFAMILY SSF51344 3 87 8.89E-23 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0169 392eebed4fa37d24bb491c07cdf74486 141 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 85 2.4E-28 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_2701 21c3fa7f876b18edb66fca75165b20ac 360 Pfam PF04303 PrpF protein 4 354 3.0E-112 T 11-10-2018 IPR007400 PrpF protein dqs_2701 21c3fa7f876b18edb66fca75165b20ac 360 Gene3D G3DSA:3.10.310.10 167 338 6.6E-113 T 11-10-2018 dqs_2701 21c3fa7f876b18edb66fca75165b20ac 360 SUPERFAMILY SSF54506 2 168 9.42E-60 T 11-10-2018 dqs_2701 21c3fa7f876b18edb66fca75165b20ac 360 Gene3D G3DSA:3.10.310.10 5 352 6.6E-113 T 11-10-2018 dqs_2701 21c3fa7f876b18edb66fca75165b20ac 360 SUPERFAMILY SSF54506 172 357 6.28E-57 T 11-10-2018 dqs_1916 113be4282c554def32704369fa7c04c7 498 SUPERFAMILY SSF51905 67 394 3.64E-27 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1916 113be4282c554def32704369fa7c04c7 498 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 73 92 7.5E-14 T 11-10-2018 dqs_1916 113be4282c554def32704369fa7c04c7 498 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 359 381 7.5E-14 T 11-10-2018 dqs_1916 113be4282c554def32704369fa7c04c7 498 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 180 198 7.5E-14 T 11-10-2018 dqs_1916 113be4282c554def32704369fa7c04c7 498 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 253 7.5E-14 T 11-10-2018 dqs_1916 113be4282c554def32704369fa7c04c7 498 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 72 403 5.2E-52 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_1916 113be4282c554def32704369fa7c04c7 498 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 260 3.7E-9 T 11-10-2018 dqs_1916 113be4282c554def32704369fa7c04c7 498 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 72 94 3.7E-9 T 11-10-2018 dqs_1916 113be4282c554def32704369fa7c04c7 498 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 374 381 3.7E-9 T 11-10-2018 dqs_1916 113be4282c554def32704369fa7c04c7 498 Gene3D G3DSA:3.50.50.100 62 462 2.7E-107 T 11-10-2018 dqs_2477 edc2dd2b40691affa03face3f355761c 925 Gene3D G3DSA:2.40.170.20 610 924 1.5E-37 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2477 edc2dd2b40691affa03face3f355761c 925 Gene3D G3DSA:2.40.170.20 100 595 1.5E-68 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2477 edc2dd2b40691affa03face3f355761c 925 Pfam PF07715 TonB-dependent Receptor Plug Domain 108 215 3.5E-15 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_2477 edc2dd2b40691affa03face3f355761c 925 Pfam PF00593 TonB dependent receptor 338 915 2.3E-26 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_2477 edc2dd2b40691affa03face3f355761c 925 SUPERFAMILY SSF56935 86 919 4.76E-87 T 11-10-2018 dqs_3619 690ba6d1d275f7bb6ed2987d89e39d42 173 Pfam PF08447 PAS fold 32 113 3.6E-13 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_3619 690ba6d1d275f7bb6ed2987d89e39d42 173 Gene3D G3DSA:3.30.450.20 10 120 1.2E-22 T 11-10-2018 dqs_3619 690ba6d1d275f7bb6ed2987d89e39d42 173 SUPERFAMILY SSF55785 19 117 4.89E-26 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3619 690ba6d1d275f7bb6ed2987d89e39d42 173 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 16 116 2.7E-14 T 11-10-2018 IPR000014 PAS domain dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 Pfam PF08245 Mur ligase middle domain 107 317 9.6E-46 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 Pfam PF01225 Mur ligase family, catalytic domain 21 93 1.1E-10 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 SUPERFAMILY SSF53623 98 337 9.16E-70 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 491 1.5E-143 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 7 491 32.835 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 Gene3D G3DSA:3.90.190.20 341 496 4.6E-56 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 Gene3D G3DSA:3.40.1190.10 98 340 2.8E-74 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 SUPERFAMILY SSF63418 15 96 7.85E-19 T 11-10-2018 IPR035911 MurE/MurF, N-terminal dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 Gene3D G3DSA:3.40.1390.10 9 97 7.9E-20 T 11-10-2018 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 426 4.0E-22 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 dqs_0950 5b29292ad5f63fb910312aaf55eba450 501 SUPERFAMILY SSF53244 340 491 3.51E-48 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0859 17cf08d85491de5dc72c955a1e815c14 186 TIGRFAM TIGR01841 phasin: phasin family protein 26 110 1.9E-22 T 11-10-2018 IPR010127 Phasin, subfamily 1 dqs_0859 17cf08d85491de5dc72c955a1e815c14 186 Pfam PF09361 Phasin protein 6 105 4.6E-32 T 11-10-2018 IPR018968 Phasin dqs_1915 eb56aa9dfea1364243de288c0c6fb07c 57 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 2.4E-13 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 dqs_1915 eb56aa9dfea1364243de288c0c6fb07c 57 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 52 19.422 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 dqs_1915 eb56aa9dfea1364243de288c0c6fb07c 57 PIRSF PIRSF036466 1 54 2.6E-17 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 dqs_0085 322013f3c417e8349138a119f4ee08eb 198 Gene3D G3DSA:1.10.10.10 117 197 1.1E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0085 322013f3c417e8349138a119f4ee08eb 198 SUPERFAMILY SSF88946 11 99 2.35E-25 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_0085 322013f3c417e8349138a119f4ee08eb 198 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 27 193 6.5E-31 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_0085 322013f3c417e8349138a119f4ee08eb 198 Pfam PF04545 Sigma-70, region 4 142 191 9.2E-12 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 dqs_0085 322013f3c417e8349138a119f4ee08eb 198 Pfam PF04542 Sigma-70 region 2 31 97 1.9E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_0085 322013f3c417e8349138a119f4ee08eb 198 SUPERFAMILY SSF88659 107 195 3.36E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_0085 322013f3c417e8349138a119f4ee08eb 198 Gene3D G3DSA:1.10.1740.10 9 96 7.5E-23 T 11-10-2018 dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 420 32.109 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 PIRSF PIRSF001549 1 420 9.6E-110 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 SUPERFAMILY SSF52954 328 418 2.29E-20 T 11-10-2018 dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 Gene3D G3DSA:3.30.930.10 2 324 3.4E-120 T 11-10-2018 dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 Pfam PF13393 Histidyl-tRNA synthetase 10 313 5.0E-48 T 11-10-2018 dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 Pfam PF03129 Anticodon binding domain 330 418 1.5E-10 T 11-10-2018 IPR004154 Anticodon-binding dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 Gene3D G3DSA:3.40.50.800 325 418 9.7E-23 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 SUPERFAMILY SSF55681 6 319 7.96E-102 T 11-10-2018 dqs_1000 51f2b840c8e213cc6108beda2716f56c 433 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 409 1.4E-153 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 dqs_1842 9fe3b601faafe1d5c33af2ba8ddab5bb 258 Gene3D G3DSA:3.40.50.300 7 255 4.8E-66 T 11-10-2018 dqs_1842 9fe3b601faafe1d5c33af2ba8ddab5bb 258 SMART SM00382 32 229 4.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1842 9fe3b601faafe1d5c33af2ba8ddab5bb 258 SUPERFAMILY SSF52540 6 234 3.34E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1842 9fe3b601faafe1d5c33af2ba8ddab5bb 258 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1842 9fe3b601faafe1d5c33af2ba8ddab5bb 258 Pfam PF00005 ABC transporter 24 173 1.0E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3853 2aa10452257b04b7e60b39b43aff31a8 136 Gene3D G3DSA:3.10.180.10 1 128 2.6E-33 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3853 2aa10452257b04b7e60b39b43aff31a8 136 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 2.7E-7 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_3853 2aa10452257b04b7e60b39b43aff31a8 136 SUPERFAMILY SSF54593 2 130 4.65E-22 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1693 69597eaa2f30df61435490b72752bf08 302 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 2 282 1.6E-63 T 11-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 dqs_2507 a34596dfa03d75bac6730f7de6ce59f8 515 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 67 239 1.8E-7 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like dqs_3018 b6eb3d093d20eaaa609433cfdc710aa2 160 Gene3D G3DSA:3.40.30.10 74 152 4.3E-9 T 11-10-2018 dqs_3018 b6eb3d093d20eaaa609433cfdc710aa2 160 SUPERFAMILY SSF52833 74 148 1.48E-7 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3018 b6eb3d093d20eaaa609433cfdc710aa2 160 Pfam PF00462 Glutaredoxin 75 131 2.8E-5 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 dqs_3018 b6eb3d093d20eaaa609433cfdc710aa2 160 Pfam PF13511 Domain of unknown function (DUF4124) 11 47 1.5E-12 T 11-10-2018 IPR025392 Domain of unknown function DUF4124 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 Gene3D G3DSA:1.10.540.10 1 133 1.1E-44 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 SUPERFAMILY SSF47203 238 387 4.19E-44 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 Gene3D G3DSA:2.40.110.10 134 238 1.3E-35 T 11-10-2018 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 SUPERFAMILY SSF56645 6 237 1.7E-76 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 Gene3D G3DSA:1.20.140.10 240 393 2.0E-44 T 11-10-2018 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 131 3.7E-36 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 239 385 5.1E-30 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_2085 3ab194223a1c4962f8422185a14e96d1 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 135 226 1.8E-20 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 dqs_1314 3997d8308f798c046df5d9969feba97b 300 SUPERFAMILY SSF48576 8 292 5.76E-83 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily dqs_1314 3997d8308f798c046df5d9969feba97b 300 Pfam PF00348 Polyprenyl synthetase 36 264 5.2E-51 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 dqs_1314 3997d8308f798c046df5d9969feba97b 300 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 87 103 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site dqs_1314 3997d8308f798c046df5d9969feba97b 300 Gene3D G3DSA:1.10.600.10 5 299 3.1E-90 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily dqs_2802 9b4d0dd3da0f4f5749707fb5fd95c6a2 110 SUPERFAMILY SSF103481 10 106 2.62E-5 T 11-10-2018 dqs_2802 9b4d0dd3da0f4f5749707fb5fd95c6a2 110 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 4 107 7.4E-42 T 11-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 dqs_2802 9b4d0dd3da0f4f5749707fb5fd95c6a2 110 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 4 108 24.406 T 11-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 SMART SM00448 24 135 4.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 SUPERFAMILY SSF52172 25 178 4.41E-33 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 SUPERFAMILY SSF55785 150 282 5.23E-19 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 156 289 3.6E-14 T 11-10-2018 IPR000014 PAS domain dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 Gene3D G3DSA:3.20.20.450 469 719 2.5E-101 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 SUPERFAMILY SSF55073 300 457 1.49E-51 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 Pfam PF00072 Response regulator receiver domain 26 135 2.5E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 Pfam PF08448 PAS fold 166 286 1.3E-8 T 11-10-2018 IPR013656 PAS fold-4 dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 SUPERFAMILY SSF141868 471 718 3.14E-89 T 11-10-2018 IPR035919 EAL domain superfamily dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 293 454 2.4E-41 T 11-10-2018 IPR000160 GGDEF domain dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 Pfam PF00563 EAL domain 472 706 6.9E-75 T 11-10-2018 IPR001633 EAL domain dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 SMART SM00091 160 226 1.2E-9 T 11-10-2018 IPR000014 PAS domain dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 SMART SM00052 466 711 5.7E-118 T 11-10-2018 IPR001633 EAL domain dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 SMART SM00267 284 456 1.1E-67 T 11-10-2018 IPR000160 GGDEF domain dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 Gene3D G3DSA:3.40.50.2300 23 153 1.5E-29 T 11-10-2018 dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 Gene3D G3DSA:3.30.70.270 290 468 7.6E-61 T 11-10-2018 dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 Pfam PF00990 Diguanylate cyclase, GGDEF domain 295 451 1.5E-50 T 11-10-2018 IPR000160 GGDEF domain dqs_3642 f7a5ae20141e8abc7467bcbd4adc63d8 726 Gene3D G3DSA:3.30.450.20 154 289 1.2E-22 T 11-10-2018 dqs_0336 bfc15b4d480ad2d6bc38dcc7c1889a50 414 SUPERFAMILY SSF51412 11 341 7.78E-34 T 11-10-2018 dqs_0336 bfc15b4d480ad2d6bc38dcc7c1889a50 414 Pfam PF03060 Nitronate monooxygenase 18 307 2.5E-25 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 Gene3D G3DSA:3.30.450.20 26 115 9.2E-8 T 11-10-2018 dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 Gene3D G3DSA:3.20.20.450 308 562 1.8E-104 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 SUPERFAMILY SSF141868 312 559 3.01E-90 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 Gene3D G3DSA:3.30.70.270 131 307 3.2E-45 T 11-10-2018 dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 Pfam PF00990 Diguanylate cyclase, GGDEF domain 134 289 2.7E-37 T 11-10-2018 IPR000160 GGDEF domain dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 Pfam PF00563 EAL domain 312 548 1.5E-77 T 11-10-2018 IPR001633 EAL domain dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 SMART SM00052 305 553 6.8E-116 T 11-10-2018 IPR001633 EAL domain dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 SMART SM00267 123 295 9.8E-46 T 11-10-2018 IPR000160 GGDEF domain dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 134 293 5.1E-27 T 11-10-2018 IPR000160 GGDEF domain dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 SUPERFAMILY SSF55073 138 296 3.14E-38 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2358 d12a9e9b2200e47ca7b0271d22f5298c 567 SUPERFAMILY SSF55785 24 105 6.15E-7 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 42 57 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 88 107 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 27 42 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 257 269 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 127 145 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 193 211 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 110 127 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 62 77 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 PRINTS PR01010 Flagellar P-ring protein signature 167 185 1.2E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 Hamap MF_00416 Flagellar P-ring protein [flgI]. 7 370 38.874 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_2868 4a799d4f898abe2abe06510060ac80c8 370 Pfam PF02119 Flagellar P-ring protein 27 369 5.8E-141 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 SUPERFAMILY SSF81301 492 764 4.17E-74 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 SUPERFAMILY SSF81593 260 410 2.28E-44 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 SUPERFAMILY SSF81301 3 259 1.88E-74 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 7 893 18.99 T 11-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Gene3D G3DSA:3.30.460.100 19 253 6.7E-65 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Gene3D G3DSA:3.30.460.100 529 760 2.5E-73 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 SUPERFAMILY SSF81593 764 892 1.73E-32 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 521 754 7.3E-65 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 13 244 2.4E-63 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Gene3D G3DSA:1.20.120.330 258 413 1.9E-57 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Gene3D G3DSA:1.20.120.330 761 893 4.4E-40 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Gene3D G3DSA:1.20.120.1510 417 527 1.2E-21 T 11-10-2018 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Pfam PF08335 GlnD PII-uridylyltransferase 270 409 1.0E-46 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 dqs_1413 ba0ef610fa01bd16aee4281e9b673238 893 Pfam PF08335 GlnD PII-uridylyltransferase 776 866 5.2E-8 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 dqs_2083 d03b9ad6de44bf8852007671b37c1ac0 131 Pfam PF01042 Endoribonuclease L-PSP 15 128 9.3E-22 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 dqs_2083 d03b9ad6de44bf8852007671b37c1ac0 131 SUPERFAMILY SSF55298 1 130 4.24E-32 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 dqs_2083 d03b9ad6de44bf8852007671b37c1ac0 131 Gene3D G3DSA:3.30.1330.40 8 130 1.8E-30 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 dqs_0511 621b664cfdc32d9f860ec9dfa577fd6d 313 Pfam PF07475 HPr Serine kinase C-terminal domain 132 301 2.0E-62 T 11-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 dqs_0511 621b664cfdc32d9f860ec9dfa577fd6d 313 SUPERFAMILY SSF53795 134 302 2.29E-36 T 11-10-2018 dqs_0511 621b664cfdc32d9f860ec9dfa577fd6d 313 SUPERFAMILY SSF75138 1 133 2.22E-26 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily dqs_0511 621b664cfdc32d9f860ec9dfa577fd6d 313 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 3 309 33.749 T 11-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 dqs_0511 621b664cfdc32d9f860ec9dfa577fd6d 313 Pfam PF02603 HPr Serine kinase N terminus 5 129 9.0E-18 T 11-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 dqs_0511 621b664cfdc32d9f860ec9dfa577fd6d 313 Gene3D G3DSA:3.40.1390.20 13 132 2.8E-17 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily dqs_0511 621b664cfdc32d9f860ec9dfa577fd6d 313 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 6 304 8.0E-93 T 11-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 dqs_0511 621b664cfdc32d9f860ec9dfa577fd6d 313 Gene3D G3DSA:3.40.50.300 133 311 8.8E-64 T 11-10-2018 dqs_1268 c3c5929f654beaa3484c7abf893bb9fe 260 Pfam PF01925 Sulfite exporter TauE/SafE 14 254 8.8E-36 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 dqs_3755 ca42eaf3e846d785b441056584ec02c2 484 SUPERFAMILY SSF50249 39 121 1.71E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_3755 ca42eaf3e846d785b441056584ec02c2 484 Gene3D G3DSA:3.40.1260.20 397 484 5.5E-7 T 11-10-2018 dqs_3755 ca42eaf3e846d785b441056584ec02c2 484 Gene3D G3DSA:2.40.50.140 31 121 5.8E-29 T 11-10-2018 dqs_3755 ca42eaf3e846d785b441056584ec02c2 484 SMART SM00316 37 115 2.0E-7 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_3755 ca42eaf3e846d785b441056584ec02c2 484 Pfam PF10150 Ribonuclease E/G family 117 388 2.7E-101 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 dqs_3755 ca42eaf3e846d785b441056584ec02c2 484 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 421 1.6E-152 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 dqs_1386 851a1db0567f7e5c623e11d439cf1953 214 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 41 200 2.0E-22 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component dqs_1386 851a1db0567f7e5c623e11d439cf1953 214 Gene3D G3DSA:3.40.50.10610 30 213 1.1E-56 T 11-10-2018 dqs_1386 851a1db0567f7e5c623e11d439cf1953 214 SUPERFAMILY SSF159594 38 207 7.06E-42 T 11-10-2018 dqs_0873 03f5a062bde809f71ad6d8d60d80ecb9 566 SUPERFAMILY SSF52540 180 559 1.57E-89 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0873 03f5a062bde809f71ad6d8d60d80ecb9 566 Pfam PF00437 Type II/IV secretion system protein 189 453 5.5E-74 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_0873 03f5a062bde809f71ad6d8d60d80ecb9 566 SUPERFAMILY SSF160246 9 149 2.88E-23 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily dqs_0873 03f5a062bde809f71ad6d8d60d80ecb9 566 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 381 395 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_0873 03f5a062bde809f71ad6d8d60d80ecb9 566 SMART SM00382 314 435 9.5E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0873 03f5a062bde809f71ad6d8d60d80ecb9 566 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 43 152 1.3E-12 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal dqs_0873 03f5a062bde809f71ad6d8d60d80ecb9 566 Gene3D G3DSA:3.40.50.300 288 564 1.3E-96 T 11-10-2018 dqs_0873 03f5a062bde809f71ad6d8d60d80ecb9 566 Gene3D G3DSA:3.30.450.90 171 286 9.1E-43 T 11-10-2018 dqs_2053 7e70c673abc2be22127ebb00442f0e3a 145 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 1 143 37.027 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 dqs_2053 7e70c673abc2be22127ebb00442f0e3a 145 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 1 140 2.1E-63 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 dqs_2053 7e70c673abc2be22127ebb00442f0e3a 145 SUPERFAMILY SSF54637 1 140 3.08E-50 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_2053 7e70c673abc2be22127ebb00442f0e3a 145 Pfam PF07977 FabA-like domain 10 135 3.3E-40 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 dqs_2053 7e70c673abc2be22127ebb00442f0e3a 145 Gene3D G3DSA:3.10.129.10 1 144 4.4E-62 T 11-10-2018 dqs_2854 8e7d0eefe85a50bd711b50372f96bea6 468 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 374 383 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_2854 8e7d0eefe85a50bd711b50372f96bea6 468 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 461 5.0E-197 T 11-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_2854 8e7d0eefe85a50bd711b50372f96bea6 468 Gene3D G3DSA:3.40.50.12240 22 466 6.7E-161 T 11-10-2018 dqs_2854 8e7d0eefe85a50bd711b50372f96bea6 468 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 172 383 3.0E-74 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_2854 8e7d0eefe85a50bd711b50372f96bea6 468 SUPERFAMILY SSF52540 119 389 2.85E-97 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2854 8e7d0eefe85a50bd711b50372f96bea6 468 SMART SM00382 184 367 3.1E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2854 8e7d0eefe85a50bd711b50372f96bea6 468 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 22 463 9.3E-175 T 11-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_4055 d814bf55681a851e44a3b651b9ec12e8 401 SMART SM00825 Beta-ketoacyl synthase 10 401 3.5E-7 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain dqs_4055 d814bf55681a851e44a3b651b9ec12e8 401 SUPERFAMILY SSF53901 15 240 3.03E-33 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_4055 d814bf55681a851e44a3b651b9ec12e8 401 Gene3D G3DSA:3.40.47.10 12 251 8.7E-31 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_4055 d814bf55681a851e44a3b651b9ec12e8 401 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 98 239 4.5E-20 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal dqs_4055 d814bf55681a851e44a3b651b9ec12e8 401 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 250 355 1.4E-26 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal dqs_4055 d814bf55681a851e44a3b651b9ec12e8 401 SUPERFAMILY SSF53901 213 400 1.08E-48 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_4055 d814bf55681a851e44a3b651b9ec12e8 401 Gene3D G3DSA:3.40.47.10 253 396 2.1E-41 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_4055 d814bf55681a851e44a3b651b9ec12e8 401 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 157 173 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site dqs_2813 9b0a4f3997dda34945ade6d98ef5f404 97 SUPERFAMILY SSF46785 2 93 1.12E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2813 9b0a4f3997dda34945ade6d98ef5f404 97 Pfam PF12840 Helix-turn-helix domain 4 75 3.6E-19 T 11-10-2018 dqs_2813 9b0a4f3997dda34945ade6d98ef5f404 97 Gene3D G3DSA:1.10.10.10 1 96 1.7E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2813 9b0a4f3997dda34945ade6d98ef5f404 97 SMART SM00418 5 95 7.6E-15 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 253 374 5.4E-34 T 11-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 8 224 6.2E-47 T 11-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 Gene3D G3DSA:3.40.50.150 214 430 3.2E-65 T 11-10-2018 dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 256 370 1.6E-5 T 11-10-2018 dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 SUPERFAMILY SSF53335 253 381 3.44E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 206 2.6E-25 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 PIRSF PIRSF036428 1 426 4.5E-91 T 11-10-2018 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00860+2.1.1.132 dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 Gene3D G3DSA:3.40.1010.10 3 110 2.9E-11 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 dqs_3676 573de1b9b890a1abc80a96fb0d939b83 436 SUPERFAMILY SSF53790 6 226 1.03E-29 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 SMART SM00729 35 243 8.0E-18 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 26 357 41.037 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 41 52 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 SUPERFAMILY SSF102114 25 312 4.45E-80 T 11-10-2018 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 Pfam PF13353 4Fe-4S single cluster domain 42 147 2.2E-7 T 11-10-2018 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 26 357 1.0E-119 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 Pfam PF04055 Radical SAM superfamily 39 203 3.2E-38 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 Gene3D G3DSA:3.20.20.70 24 357 2.2E-103 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1730 93b9a69e84e6637732bda592d99f8f2e 357 Pfam PF06463 Molybdenum Cofactor Synthesis C 212 337 2.6E-39 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_2005 f4dd8975c63e9b0817a5ed7dfd1f82f2 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_2005 f4dd8975c63e9b0817a5ed7dfd1f82f2 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 dqs_2005 f4dd8975c63e9b0817a5ed7dfd1f82f2 486 Pfam PF00171 Aldehyde dehydrogenase family 13 482 2.7E-151 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_2005 f4dd8975c63e9b0817a5ed7dfd1f82f2 486 Gene3D G3DSA:3.40.605.10 17 474 3.2E-166 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_2005 f4dd8975c63e9b0817a5ed7dfd1f82f2 486 TIGRFAM TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase 4 486 4.4E-269 T 11-10-2018 IPR017628 2-hydroxymuconic semialdehyde dehydrogenase GO:0016620|GO:0055114 dqs_2005 f4dd8975c63e9b0817a5ed7dfd1f82f2 486 SUPERFAMILY SSF53720 2 485 2.49E-151 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_2005 f4dd8975c63e9b0817a5ed7dfd1f82f2 486 Gene3D G3DSA:3.40.309.10 257 451 3.2E-166 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_1092 68bca87785edaf605c4467efa561c338 253 Pfam PF00072 Response regulator receiver domain 7 120 1.0E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1092 68bca87785edaf605c4467efa561c338 253 Gene3D G3DSA:3.40.50.2300 1 133 2.2E-32 T 11-10-2018 dqs_1092 68bca87785edaf605c4467efa561c338 253 SMART SM00448 5 120 6.8E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1092 68bca87785edaf605c4467efa561c338 253 SMART SM00850 151 252 3.2E-24 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 dqs_1092 68bca87785edaf605c4467efa561c338 253 Pfam PF04397 LytTr DNA-binding domain 152 251 1.8E-19 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 dqs_1092 68bca87785edaf605c4467efa561c338 253 SUPERFAMILY SSF52172 4 139 5.41E-34 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1092 68bca87785edaf605c4467efa561c338 253 Gene3D G3DSA:2.40.50.40 143 208 2.7E-7 T 11-10-2018 dqs_3234 7ef780441877887ef0cf642494c049aa 128 Gene3D G3DSA:1.10.760.10 42 128 3.8E-35 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3234 7ef780441877887ef0cf642494c049aa 128 SUPERFAMILY SSF46626 46 124 1.89E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3234 7ef780441877887ef0cf642494c049aa 128 PRINTS PR00607 Class IE cytochrome C signature 98 110 3.8E-13 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 dqs_3234 7ef780441877887ef0cf642494c049aa 128 PRINTS PR00607 Class IE cytochrome C signature 66 76 3.8E-13 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 dqs_3234 7ef780441877887ef0cf642494c049aa 128 PRINTS PR00607 Class IE cytochrome C signature 55 66 3.8E-13 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 dqs_3234 7ef780441877887ef0cf642494c049aa 128 PRINTS PR00607 Class IE cytochrome C signature 113 124 3.8E-13 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 dqs_3234 7ef780441877887ef0cf642494c049aa 128 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 45 123 1.5E-15 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3108 b43f622e5d97cf841831745a36ccee04 186 Gene3D G3DSA:2.160.20.80 32 186 3.6E-37 T 11-10-2018 dqs_3108 b43f622e5d97cf841831745a36ccee04 186 Pfam PF00805 Pentapeptide repeats (8 copies) 94 127 3.1E-7 T 11-10-2018 IPR001646 Pentapeptide repeat dqs_3108 b43f622e5d97cf841831745a36ccee04 186 Pfam PF00805 Pentapeptide repeats (8 copies) 35 71 1.1E-11 T 11-10-2018 IPR001646 Pentapeptide repeat dqs_3108 b43f622e5d97cf841831745a36ccee04 186 SUPERFAMILY SSF141571 35 180 2.94E-35 T 11-10-2018 dqs_2119 8d630d54c1ebcf995e32dba7012958ea 328 Pfam PF14525 AraC-binding-like domain 24 199 3.8E-39 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like dqs_2119 8d630d54c1ebcf995e32dba7012958ea 328 SUPERFAMILY SSF46689 223 273 1.31E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2119 8d630d54c1ebcf995e32dba7012958ea 328 Pfam PF12833 Helix-turn-helix domain 245 326 1.4E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2119 8d630d54c1ebcf995e32dba7012958ea 328 SMART SM00342 239 324 1.1E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2119 8d630d54c1ebcf995e32dba7012958ea 328 Gene3D G3DSA:1.10.10.60 223 328 9.4E-36 T 11-10-2018 dqs_3740 6ad2edea18dd861905b0e168593c92ce 262 Pfam PF01061 ABC-2 type transporter 12 222 7.2E-26 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 dqs_3740 6ad2edea18dd861905b0e168593c92ce 262 PIRSF PIRSF006648 3 257 2.1E-15 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 dqs_0099 37ef2bef35cadd3a00b41563f46358ec 232 SUPERFAMILY SSF81342 3 183 4.87E-33 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 dqs_0099 37ef2bef35cadd3a00b41563f46358ec 232 Gene3D G3DSA:1.20.950.20 1 164 9.9E-17 T 11-10-2018 dqs_0099 37ef2bef35cadd3a00b41563f46358ec 232 Pfam PF01292 Prokaryotic cytochrome b561 8 178 2.2E-17 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 dqs_0881 59006bef9a71d55cce9aca7850933b9a 93 SUPERFAMILY SSF52091 7 91 9.42E-14 T 11-10-2018 IPR036513 STAS domain superfamily dqs_0881 59006bef9a71d55cce9aca7850933b9a 93 Gene3D G3DSA:3.30.750.24 5 93 3.4E-16 T 11-10-2018 IPR036513 STAS domain superfamily dqs_0881 59006bef9a71d55cce9aca7850933b9a 93 Pfam PF13466 STAS domain 7 86 6.7E-20 T 11-10-2018 IPR002645 STAS domain dqs_3175 7cd2f42c67e4d9fc8cf0adf6f8d72153 55 Pfam PF00301 Rubredoxin 3 48 8.1E-18 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_3175 7cd2f42c67e4d9fc8cf0adf6f8d72153 55 SUPERFAMILY SSF57802 1 53 3.53E-18 T 11-10-2018 dqs_3175 7cd2f42c67e4d9fc8cf0adf6f8d72153 55 Gene3D G3DSA:2.20.28.10 1 53 5.0E-20 T 11-10-2018 dqs_1648 a7cb718da5bd557671a14ac2651db49c 115 Pfam PF03692 Putative zinc- or iron-chelating domain 5 101 8.0E-8 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein dqs_2476 643e419e884abb491abfcb0dba3af8b3 770 Pfam PF07587 Protein of unknown function (DUF1553) 455 709 1.9E-92 T 11-10-2018 IPR022655 Domain of unknown function DUF1553 dqs_2476 643e419e884abb491abfcb0dba3af8b3 770 Pfam PF07583 Protein of unknown function (DUF1549) 63 268 6.5E-84 T 11-10-2018 IPR011444 Domain of unknown function DUF1549 dqs_3260 7b3770325d9cf777a72c53a1a37a5a29 160 Hamap MF_00476 Nickel-responsive regulator [nikR]. 1 132 27.328 T 11-10-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 dqs_3260 7b3770325d9cf777a72c53a1a37a5a29 160 SUPERFAMILY SSF47598 1 43 9.34E-11 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 dqs_3260 7b3770325d9cf777a72c53a1a37a5a29 160 Pfam PF01402 Ribbon-helix-helix protein, copG family 3 41 2.5E-9 T 11-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 dqs_3260 7b3770325d9cf777a72c53a1a37a5a29 160 Gene3D G3DSA:1.10.1220.10 1 46 2.3E-18 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 dqs_3260 7b3770325d9cf777a72c53a1a37a5a29 160 Pfam PF08753 NikR C terminal nickel binding domain 54 130 2.9E-31 T 11-10-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal dqs_3260 7b3770325d9cf777a72c53a1a37a5a29 160 Gene3D G3DSA:3.30.70.1150 50 133 5.2E-34 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal dqs_3260 7b3770325d9cf777a72c53a1a37a5a29 160 SUPERFAMILY SSF55021 51 132 1.08E-26 T 11-10-2018 dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 Gene3D G3DSA:3.60.20.10 2 240 9.5E-73 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 Gene3D G3DSA:3.40.50.10490 248 608 7.4E-142 T 11-10-2018 dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 SUPERFAMILY SSF56235 2 234 6.69E-71 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 Pfam PF13522 Glutamine amidotransferase domain 63 191 8.3E-20 T 11-10-2018 dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 1.0E-248 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 39.345 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 SUPERFAMILY SSF53697 244 609 9.28E-110 T 11-10-2018 dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 Pfam PF01380 SIS domain 463 591 4.3E-26 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 Pfam PF01380 SIS domain 292 417 2.2E-32 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 dqs_3781 d811773d1a2fc095cf656d66a24e4317 609 Gene3D G3DSA:3.40.50.10490 447 594 7.4E-142 T 11-10-2018 dqs_2333 89555cb812ebed5404483fabbdad9088 382 Gene3D G3DSA:1.10.3210.10 169 378 1.0E-59 T 11-10-2018 dqs_2333 89555cb812ebed5404483fabbdad9088 382 SMART SM00471 185 333 2.4E-7 T 11-10-2018 IPR003607 HD/PDEase domain dqs_2333 89555cb812ebed5404483fabbdad9088 382 Gene3D G3DSA:3.30.450.40 17 161 1.7E-9 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_2333 89555cb812ebed5404483fabbdad9088 382 Pfam PF01966 HD domain 192 323 1.7E-16 T 11-10-2018 IPR006674 HD domain dqs_2333 89555cb812ebed5404483fabbdad9088 382 SUPERFAMILY SSF55781 34 158 5.4E-12 T 11-10-2018 dqs_2333 89555cb812ebed5404483fabbdad9088 382 SUPERFAMILY SSF109604 182 362 2.88E-31 T 11-10-2018 dqs_2333 89555cb812ebed5404483fabbdad9088 382 Pfam PF13185 GAF domain 41 159 2.9E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 28 83 4.9E-20 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 Pfam PF13193 AMP-binding enzyme C-terminal domain 540 621 1.3E-26 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 Gene3D G3DSA:3.40.50.12780 54 524 1.8E-104 T 11-10-2018 dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 Pfam PF00501 AMP-binding enzyme 88 531 8.2E-95 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 5 654 51.441 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 ProSitePatterns PS00455 Putative AMP-binding domain signature. 263 274 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 Gene3D G3DSA:3.30.300.30 527 654 1.2E-28 T 11-10-2018 dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 24 653 9.9E-296 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 dqs_2558 6b8567f8951a71cd57ebfc61a671fd3b 654 SUPERFAMILY SSF56801 12 651 3.01E-176 T 11-10-2018 dqs_4019 f0bf080736468c293faebd4592380aa4 657 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 356 369 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_4019 f0bf080736468c293faebd4592380aa4 657 SUPERFAMILY SSF46689 544 651 6.27E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_4019 f0bf080736468c293faebd4592380aa4 657 Gene3D G3DSA:1.10.8.60 505 581 6.2E-14 T 11-10-2018 dqs_4019 f0bf080736468c293faebd4592380aa4 657 SMART SM00382 352 496 3.8E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_4019 f0bf080736468c293faebd4592380aa4 657 Gene3D G3DSA:1.10.10.60 614 652 3.7E-10 T 11-10-2018 dqs_4019 f0bf080736468c293faebd4592380aa4 657 Pfam PF00158 Sigma-54 interaction domain 333 495 1.2E-63 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_4019 f0bf080736468c293faebd4592380aa4 657 SUPERFAMILY SSF52540 332 574 4.8E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4019 f0bf080736468c293faebd4592380aa4 657 SUPERFAMILY SSF55781 64 203 1.22E-6 T 11-10-2018 dqs_4019 f0bf080736468c293faebd4592380aa4 657 Gene3D G3DSA:3.40.50.300 323 504 2.7E-59 T 11-10-2018 dqs_4019 f0bf080736468c293faebd4592380aa4 657 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 419 434 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_4019 f0bf080736468c293faebd4592380aa4 657 Pfam PF01590 GAF domain 71 203 2.5E-6 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_4019 f0bf080736468c293faebd4592380aa4 657 Gene3D G3DSA:3.30.450.40 14 206 1.3E-42 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_4019 f0bf080736468c293faebd4592380aa4 657 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 544 553 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_4019 f0bf080736468c293faebd4592380aa4 657 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 615 632 2.3E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_4019 f0bf080736468c293faebd4592380aa4 657 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 632 652 2.3E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_4019 f0bf080736468c293faebd4592380aa4 657 Pfam PF02954 Bacterial regulatory protein, Fis family 616 649 5.8E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3577 dbd3a591e1169a31a22b9b5c2bc6d025 254 Gene3D G3DSA:3.40.50.150 97 249 3.5E-20 T 11-10-2018 dqs_3577 dbd3a591e1169a31a22b9b5c2bc6d025 254 SUPERFAMILY SSF53335 102 236 1.51E-19 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3577 dbd3a591e1169a31a22b9b5c2bc6d025 254 Pfam PF13649 Methyltransferase domain 127 212 4.4E-6 T 11-10-2018 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1047 1161 5.8E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF00512 His Kinase A (phospho-acceptor) domain 936 1000 6.6E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:3.30.450.20 805 913 9.0E-24 T 11-10-2018 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF00989 PAS fold 803 912 6.1E-5 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF13426 PAS domain 433 526 4.8E-7 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF13426 PAS domain 668 771 2.4E-14 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF13426 PAS domain 547 649 1.5E-16 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:1.20.120.160 1478 1587 4.1E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 654 779 1.4E-23 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 414 534 2.1E-15 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 538 657 3.6E-21 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 805 918 5.7E-11 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF00072 Response regulator receiver domain 1182 1296 8.7E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF00072 Response regulator receiver domain 1330 1444 3.3E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00387 1047 1163 9.4E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00388 935 1000 3.2E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00091 802 868 1.4 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00091 658 725 1.9E-5 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00091 536 602 2.6E-5 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00091 416 483 1.5E-4 T 11-10-2018 IPR000014 PAS domain dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:1.10.287.130 914 998 3.1E-27 T 11-10-2018 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Pfam PF01627 Hpt domain 1512 1562 1.2E-7 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF47384 921 1002 8.44E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF55785 664 770 3.7E-29 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1088 1102 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1123 1141 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1106 1116 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1147 1160 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00086 730 772 8.2E-8 T 11-10-2018 IPR001610 PAC motif dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00086 874 915 0.0093 T 11-10-2018 IPR001610 PAC motif dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00086 488 528 0.032 T 11-10-2018 IPR001610 PAC motif dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00086 608 650 4.0E-6 T 11-10-2018 IPR001610 PAC motif dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:3.30.565.10 999 1163 1.6E-49 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF55785 794 913 7.5E-15 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:3.30.450.20 538 660 6.8E-39 T 11-10-2018 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:3.30.450.20 661 804 3.0E-42 T 11-10-2018 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:3.40.50.12740 1179 1328 4.7E-31 T 11-10-2018 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:3.40.50.2300 1329 1457 2.1E-39 T 11-10-2018 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 Gene3D G3DSA:3.30.450.20 409 537 1.1E-23 T 11-10-2018 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF52172 1178 1306 1.34E-31 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF47226 1427 1567 1.31E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF55785 403 526 1.4E-18 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF55874 989 1158 2.1E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF55785 543 650 2.79E-29 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SUPERFAMILY SSF52172 1326 1448 2.99E-36 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00448 1180 1298 6.0E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00448 1328 1444 1.2E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2635 e82a47e5ee556d0b6a572a6b534d6509 1682 SMART SM00073 1488 1580 0.0078 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 21 649 2.2E-214 T 11-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 SUPERFAMILY SSF52540 168 440 1.35E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 SMART SM00490 492 575 5.4E-20 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 Pfam PF00271 Helicase conserved C-terminal domain 468 574 2.6E-16 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 SUPERFAMILY SSF50249 7 163 5.05E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 Gene3D G3DSA:2.40.50.140 39 130 5.5E-7 T 11-10-2018 dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 SUPERFAMILY SSF52540 376 585 4.94E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 SMART SM00487 253 446 1.1E-27 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 Pfam PF17191 RecG wedge domain 7 163 2.3E-15 T 11-10-2018 IPR033454 RecG, wedge domain dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 Gene3D G3DSA:3.40.50.300 444 616 7.3E-54 T 11-10-2018 dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 Gene3D G3DSA:3.40.50.300 200 436 7.5E-84 T 11-10-2018 dqs_0488 9413e1ede07232c7089556f66b2c6f8e 679 Pfam PF00270 DEAD/DEAH box helicase 279 421 1.3E-15 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_3338 c804387e3ec5e918fe3c1b53e91c145a 363 Gene3D G3DSA:3.40.50.300 89 340 2.6E-86 T 11-10-2018 dqs_3338 c804387e3ec5e918fe3c1b53e91c145a 363 SUPERFAMILY SSF117916 1 84 1.7E-17 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily dqs_3338 c804387e3ec5e918fe3c1b53e91c145a 363 ProSitePatterns PS01215 Mrp family signature. 204 220 - T 11-10-2018 IPR000808 Mrp, conserved site GO:0005524 dqs_3338 c804387e3ec5e918fe3c1b53e91c145a 363 SUPERFAMILY SSF52540 90 325 3.07E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3338 c804387e3ec5e918fe3c1b53e91c145a 363 Gene3D G3DSA:3.30.300.130 2 88 2.4E-10 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily dqs_3338 c804387e3ec5e918fe3c1b53e91c145a 363 Hamap MF_02040 Iron-sulfur cluster carrier protein. 92 341 38.167 T 11-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein dqs_3338 c804387e3ec5e918fe3c1b53e91c145a 363 Pfam PF01883 Iron-sulfur cluster assembly protein 6 78 6.3E-22 T 11-10-2018 IPR002744 MIP18 family-like dqs_3338 c804387e3ec5e918fe3c1b53e91c145a 363 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 97 340 4.5E-105 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 dqs_1853 e6765ae1578807978fe5c98f1b6e86c2 260 SUPERFAMILY SSF109998 26 160 3.02E-19 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily dqs_1853 e6765ae1578807978fe5c98f1b6e86c2 260 Pfam PF13616 PPIC-type PPIASE domain 142 221 6.3E-20 T 11-10-2018 dqs_1853 e6765ae1578807978fe5c98f1b6e86c2 260 Gene3D G3DSA:3.10.50.40 129 226 1.8E-26 T 11-10-2018 dqs_1853 e6765ae1578807978fe5c98f1b6e86c2 260 SUPERFAMILY SSF54534 117 221 2.55E-23 T 11-10-2018 dqs_1853 e6765ae1578807978fe5c98f1b6e86c2 260 Pfam PF13623 SurA N-terminal domain 21 86 6.2E-7 T 11-10-2018 dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 SUPERFAMILY SSF52518 61 471 2.95E-131 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 10 892 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 87 303 1.9E-9 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 PIRSF PIRSF000156 3 893 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 Gene3D G3DSA:3.40.50.970 476 710 6.8E-107 T 11-10-2018 dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 SUPERFAMILY SSF52518 477 704 1.37E-95 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 Gene3D G3DSA:3.40.50.920 711 893 6.6E-77 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 Gene3D G3DSA:3.40.50.970 60 475 2.3E-126 T 11-10-2018 dqs_1495 51a82ecc794b544a6b0ba45f6db36ae5 893 SUPERFAMILY SSF52922 706 891 2.79E-60 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_2618 366cebd63f157cb37920055f7fb97813 568 Gene3D G3DSA:3.40.50.970 375 568 1.3E-46 T 11-10-2018 dqs_2618 366cebd63f157cb37920055f7fb97813 568 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 413 563 1.8E-25 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 dqs_2618 366cebd63f157cb37920055f7fb97813 568 SUPERFAMILY SSF52518 1 188 6.42E-29 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2618 366cebd63f157cb37920055f7fb97813 568 SUPERFAMILY SSF52518 381 567 1.04E-40 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2618 366cebd63f157cb37920055f7fb97813 568 SUPERFAMILY SSF52467 199 369 5.54E-22 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_2618 366cebd63f157cb37920055f7fb97813 568 Gene3D G3DSA:3.40.50.1220 201 374 4.7E-29 T 11-10-2018 dqs_2618 366cebd63f157cb37920055f7fb97813 568 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 184 6.5E-36 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 dqs_2618 366cebd63f157cb37920055f7fb97813 568 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 440 459 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 dqs_2618 366cebd63f157cb37920055f7fb97813 568 Gene3D G3DSA:3.40.50.970 1 188 1.0E-44 T 11-10-2018 dqs_2618 366cebd63f157cb37920055f7fb97813 568 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 207 313 5.8E-11 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 dqs_3542 0c66b793fc22b26edc06df29464c8fc7 131 Gene3D G3DSA:3.30.1370.30 2 73 1.5E-27 T 11-10-2018 dqs_3542 0c66b793fc22b26edc06df29464c8fc7 131 SUPERFAMILY SSF56047 2 130 1.31E-46 T 11-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3542 0c66b793fc22b26edc06df29464c8fc7 131 Gene3D G3DSA:3.30.1490.10 74 131 2.2E-23 T 11-10-2018 dqs_3542 0c66b793fc22b26edc06df29464c8fc7 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3542 0c66b793fc22b26edc06df29464c8fc7 131 Pfam PF00410 Ribosomal protein S8 5 130 4.8E-49 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3542 0c66b793fc22b26edc06df29464c8fc7 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 32.09 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_1121 33d2b56909b4483df7906eedcdee0bc0 231 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 6 226 1.8E-80 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase dqs_1121 33d2b56909b4483df7906eedcdee0bc0 231 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 12 227 3.5E-56 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase dqs_1121 33d2b56909b4483df7906eedcdee0bc0 231 SUPERFAMILY SSF64438 1 229 5.68E-81 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic dqs_1121 33d2b56909b4483df7906eedcdee0bc0 231 Gene3D G3DSA:3.60.140.10 1 231 1.3E-89 T 11-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily dqs_0643 0d196f9d6ca634e6f24145b9b4da16d1 292 Pfam PF00892 EamA-like transporter family 163 288 9.5E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0643 0d196f9d6ca634e6f24145b9b4da16d1 292 Pfam PF00892 EamA-like transporter family 13 141 2.3E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0643 0d196f9d6ca634e6f24145b9b4da16d1 292 SUPERFAMILY SSF103481 46 143 3.66E-15 T 11-10-2018 dqs_0643 0d196f9d6ca634e6f24145b9b4da16d1 292 SUPERFAMILY SSF103481 196 289 4.32E-14 T 11-10-2018 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 SMART SM00304 219 271 5.0E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 Gene3D G3DSA:1.10.287.950 219 549 2.8E-77 T 11-10-2018 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 334 514 2.1E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 Pfam PF00672 HAMP domain 221 267 1.7E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 413 442 4.3E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 411 4.3E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 461 490 4.3E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 13 38 4.3E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 SUPERFAMILY SSF58104 239 548 2.35E-73 T 11-10-2018 dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 Pfam PF12729 Four helix bundle sensory module for signal transduction 12 189 7.3E-14 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain dqs_2705 63bf03b239d897591bb8f6653ec552ec 550 SMART SM00283 286 547 3.2E-75 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3064 eb5386cbec09a908f839c484310c52a0 234 Gene3D G3DSA:1.10.3720.10 1 229 3.4E-24 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3064 eb5386cbec09a908f839c484310c52a0 234 SUPERFAMILY SSF161098 16 221 7.33E-29 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3064 eb5386cbec09a908f839c484310c52a0 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 232 5.1E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_3855 57b75997b5e276933d469961fa11a401 154 Pfam PF00583 Acetyltransferase (GNAT) family 47 133 1.3E-13 T 11-10-2018 IPR000182 GNAT domain dqs_3855 57b75997b5e276933d469961fa11a401 154 Gene3D G3DSA:3.40.630.30 11 149 2.0E-28 T 11-10-2018 dqs_3855 57b75997b5e276933d469961fa11a401 154 SUPERFAMILY SSF55729 10 136 1.11E-26 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_1270 695c9cfb4267b9411124e0b381792722 420 Gene3D G3DSA:3.40.1480.10 253 414 2.7E-139 T 11-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily dqs_1270 695c9cfb4267b9411124e0b381792722 420 SUPERFAMILY SSF82544 3 419 1.01E-153 T 11-10-2018 dqs_1270 695c9cfb4267b9411124e0b381792722 420 Gene3D G3DSA:3.40.50.10180 35 252 2.7E-139 T 11-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 dqs_1270 695c9cfb4267b9411124e0b381792722 420 Pfam PF05161 MOFRL family 308 413 4.7E-35 T 11-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 dqs_1270 695c9cfb4267b9411124e0b381792722 420 Pfam PF13660 Domain of unknown function (DUF4147) 9 229 4.4E-83 T 11-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 dqs_2023 80d7d0573d1ba5151ede5bcac1d7b0f4 220 Gene3D G3DSA:3.30.2350.10 5 219 5.5E-68 T 11-10-2018 dqs_2023 80d7d0573d1ba5151ede5bcac1d7b0f4 220 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 60 74 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2023 80d7d0573d1ba5151ede5bcac1d7b0f4 220 SUPERFAMILY SSF55120 8 219 1.15E-60 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2023 80d7d0573d1ba5151ede5bcac1d7b0f4 220 Pfam PF00849 RNA pseudouridylate synthase 22 170 8.4E-28 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_0213 4702d5329c908f68d8bb692270785391 381 Gene3D G3DSA:3.60.21.10 1 266 2.1E-82 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like dqs_0213 4702d5329c908f68d8bb692270785391 381 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 267 353 4.6E-10 T 11-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain dqs_0213 4702d5329c908f68d8bb692270785391 381 SUPERFAMILY SSF56300 1 307 7.6E-56 T 11-10-2018 dqs_0213 4702d5329c908f68d8bb692270785391 381 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 244 9.1E-53 T 11-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 dqs_0213 4702d5329c908f68d8bb692270785391 381 Pfam PF00149 Calcineurin-like phosphoesterase 1 92 1.5E-13 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 dqs_1109 d8d67e4cd92c18079404b26f70ecbb47 494 SUPERFAMILY SSF52540 78 360 9.47E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1109 d8d67e4cd92c18079404b26f70ecbb47 494 Pfam PF00271 Helicase conserved C-terminal domain 236 342 6.9E-29 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_1109 d8d67e4cd92c18079404b26f70ecbb47 494 Gene3D G3DSA:3.40.50.300 217 388 4.7E-50 T 11-10-2018 dqs_1109 d8d67e4cd92c18079404b26f70ecbb47 494 Pfam PF00270 DEAD/DEAH box helicase 25 199 2.9E-52 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_1109 d8d67e4cd92c18079404b26f70ecbb47 494 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site dqs_1109 d8d67e4cd92c18079404b26f70ecbb47 494 SMART SM00487 20 225 5.5E-65 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_1109 d8d67e4cd92c18079404b26f70ecbb47 494 Gene3D G3DSA:3.40.50.300 1 213 3.9E-81 T 11-10-2018 dqs_1109 d8d67e4cd92c18079404b26f70ecbb47 494 SMART SM00490 261 342 7.0E-34 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_1156 0d47545bc8f90b8f2f8e1adabf6ed460 271 Pfam PF00290 Tryptophan synthase alpha chain 8 254 1.6E-86 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 dqs_1156 0d47545bc8f90b8f2f8e1adabf6ed460 271 SUPERFAMILY SSF51366 1 249 3.01E-90 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 dqs_1156 0d47545bc8f90b8f2f8e1adabf6ed460 271 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 259 3.4E-74 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 dqs_1156 0d47545bc8f90b8f2f8e1adabf6ed460 271 Gene3D G3DSA:3.20.20.70 1 269 3.9E-101 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1156 0d47545bc8f90b8f2f8e1adabf6ed460 271 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 262 34.588 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 dqs_1156 0d47545bc8f90b8f2f8e1adabf6ed460 271 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 11-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 dqs_1663 386c6041156b13c36b368bbe88c43569 318 Gene3D G3DSA:3.40.50.970 1 186 1.2E-64 T 11-10-2018 dqs_1663 386c6041156b13c36b368bbe88c43569 318 SUPERFAMILY SSF52518 2 197 9.32E-52 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1663 386c6041156b13c36b368bbe88c43569 318 Pfam PF02780 Transketolase, C-terminal domain 187 309 8.1E-43 T 11-10-2018 IPR033248 Transketolase, C-terminal domain dqs_1663 386c6041156b13c36b368bbe88c43569 318 SMART SM00861 4 172 1.6E-37 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_1663 386c6041156b13c36b368bbe88c43569 318 Gene3D G3DSA:3.40.50.920 187 318 5.0E-50 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_1663 386c6041156b13c36b368bbe88c43569 318 SUPERFAMILY SSF52922 182 317 7.46E-42 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_1663 386c6041156b13c36b368bbe88c43569 318 Pfam PF02779 Transketolase, pyrimidine binding domain 4 166 1.9E-30 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_0103 a54a32592d424254cdf17fc0e1160477 661 SUPERFAMILY SSF56935 15 661 4.76E-85 T 11-10-2018 dqs_0103 a54a32592d424254cdf17fc0e1160477 661 Pfam PF07715 TonB-dependent Receptor Plug Domain 26 136 9.8E-21 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_0103 a54a32592d424254cdf17fc0e1160477 661 Gene3D G3DSA:2.170.130.10 11 141 1.3E-28 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_0103 a54a32592d424254cdf17fc0e1160477 661 Pfam PF00593 TonB dependent receptor 239 625 4.1E-31 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_0103 a54a32592d424254cdf17fc0e1160477 661 Gene3D G3DSA:2.40.170.20 142 635 4.5E-46 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2778 5e657edaa1e5912f53d516a2259eabf3 207 Gene3D G3DSA:3.40.50.1000 7 199 2.9E-34 T 11-10-2018 IPR023214 HAD superfamily dqs_2778 5e657edaa1e5912f53d516a2259eabf3 207 Gene3D G3DSA:1.10.150.240 17 81 2.9E-34 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 dqs_2778 5e657edaa1e5912f53d516a2259eabf3 207 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 178 4.3E-28 T 11-10-2018 dqs_2778 5e657edaa1e5912f53d516a2259eabf3 207 SUPERFAMILY SSF56784 1 205 8.67E-39 T 11-10-2018 IPR036412 HAD-like superfamily dqs_3909 60a18cd116b82d9a8340f23f8778a411 166 SUPERFAMILY SSF47188 12 138 3.53E-32 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_3909 60a18cd116b82d9a8340f23f8778a411 166 Gene3D G3DSA:1.20.120.50 12 145 2.8E-35 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_3909 60a18cd116b82d9a8340f23f8778a411 166 Pfam PF01814 Hemerythrin HHE cation binding domain 26 138 1.2E-12 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_3909 60a18cd116b82d9a8340f23f8778a411 166 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 18 137 8.0E-34 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 dqs_3109 51545e36580bc1cf6513f9f0d890a0bf 160 SUPERFAMILY SSF46626 10 154 3.2E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3109 51545e36580bc1cf6513f9f0d890a0bf 160 Gene3D G3DSA:1.10.760.10 44 157 3.3E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3109 51545e36580bc1cf6513f9f0d890a0bf 160 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 59 151 5.3E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3836 78ff05ce4693e562b9a2967da5c06961 676 Pfam PF17201 Cache 3/Cache 2 fusion domain 42 321 9.2E-44 T 11-10-2018 IPR033462 Cache 3/Cache 2 fusion domain dqs_3836 78ff05ce4693e562b9a2967da5c06961 676 SMART SM00304 344 399 1.7E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_3836 78ff05ce4693e562b9a2967da5c06961 676 SUPERFAMILY SSF103190 111 206 8.24E-6 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_3836 78ff05ce4693e562b9a2967da5c06961 676 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 460 642 1.7E-48 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3836 78ff05ce4693e562b9a2967da5c06961 676 SMART SM00283 414 675 9.4E-79 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3836 78ff05ce4693e562b9a2967da5c06961 676 SUPERFAMILY SSF58104 374 676 8.24E-72 T 11-10-2018 dqs_3836 78ff05ce4693e562b9a2967da5c06961 676 Gene3D G3DSA:1.10.287.950 346 676 1.6E-71 T 11-10-2018 dqs_0936 6808dc71b17281d80f35b7897a97d928 165 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 20 159 7.0E-62 T 11-10-2018 dqs_0936 6808dc71b17281d80f35b7897a97d928 165 ProSitePatterns PS01029 Dehydroquinase class II signature. 23 40 - T 11-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 dqs_0936 6808dc71b17281d80f35b7897a97d928 165 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 165 73.955 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 dqs_0936 6808dc71b17281d80f35b7897a97d928 165 PIRSF PIRSF001399 16 163 4.2E-59 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 dqs_0936 6808dc71b17281d80f35b7897a97d928 165 Pfam PF01220 Dehydroquinase class II 19 156 6.2E-61 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 dqs_0936 6808dc71b17281d80f35b7897a97d928 165 SUPERFAMILY SSF52304 19 162 1.18E-61 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 dqs_0936 6808dc71b17281d80f35b7897a97d928 165 Gene3D G3DSA:3.40.50.9100 5 164 8.2E-66 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 dqs_0936 6808dc71b17281d80f35b7897a97d928 165 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 19 157 1.7E-59 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 dqs_2207 2f5dcfb70dac6d63c2ddcea1f3bf65c1 284 SUPERFAMILY SSF103481 37 133 5.89E-11 T 11-10-2018 dqs_2207 2f5dcfb70dac6d63c2ddcea1f3bf65c1 284 SUPERFAMILY SSF103481 176 274 1.83E-11 T 11-10-2018 dqs_2207 2f5dcfb70dac6d63c2ddcea1f3bf65c1 284 Pfam PF00892 EamA-like transporter family 139 265 7.1E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_2207 2f5dcfb70dac6d63c2ddcea1f3bf65c1 284 Pfam PF00892 EamA-like transporter family 2 129 1.7E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0490 a0bd2aa921ad6aaec4efa251b2ff5497 287 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 9 285 1.2E-105 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 dqs_0490 a0bd2aa921ad6aaec4efa251b2ff5497 287 Gene3D G3DSA:1.10.357.140 20 168 7.5E-43 T 11-10-2018 dqs_0490 a0bd2aa921ad6aaec4efa251b2ff5497 287 Pfam PF01040 UbiA prenyltransferase family 25 270 4.5E-64 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 dqs_0490 a0bd2aa921ad6aaec4efa251b2ff5497 287 Gene3D G3DSA:1.20.120.1780 169 287 1.8E-11 T 11-10-2018 dqs_0490 a0bd2aa921ad6aaec4efa251b2ff5497 287 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 2 285 29.755 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 dqs_0490 a0bd2aa921ad6aaec4efa251b2ff5497 287 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 64 86 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site dqs_3747 ce381a4979df275c17906c39aaa4afc7 317 Gene3D G3DSA:3.30.200.20 1 102 8.2E-35 T 11-10-2018 dqs_3747 ce381a4979df275c17906c39aaa4afc7 317 Hamap MF_00301 Homoserine kinase [thrB]. 1 317 150.985 T 11-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 dqs_3747 ce381a4979df275c17906c39aaa4afc7 317 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 302 1.2E-110 T 11-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 dqs_3747 ce381a4979df275c17906c39aaa4afc7 317 SUPERFAMILY SSF56112 5 305 1.15E-73 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_3747 ce381a4979df275c17906c39aaa4afc7 317 Pfam PF01636 Phosphotransferase enzyme family 27 252 4.4E-33 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase dqs_3747 ce381a4979df275c17906c39aaa4afc7 317 Gene3D G3DSA:3.90.1200.10 105 308 3.1E-72 T 11-10-2018 dqs_2420 e470bb1bb065ea9c9ee56d5876584d69 423 Pfam PF01966 HD domain 26 138 5.1E-5 T 11-10-2018 IPR006674 HD domain dqs_2420 e470bb1bb065ea9c9ee56d5876584d69 423 Pfam PF01966 HD domain 240 360 3.1E-18 T 11-10-2018 IPR006674 HD domain dqs_2420 e470bb1bb065ea9c9ee56d5876584d69 423 SUPERFAMILY SSF109604 229 398 2.75E-31 T 11-10-2018 dqs_2420 e470bb1bb065ea9c9ee56d5876584d69 423 SMART SM00471 235 370 5.3E-13 T 11-10-2018 IPR003607 HD/PDEase domain dqs_2420 e470bb1bb065ea9c9ee56d5876584d69 423 SMART SM00471 20 150 7.9 T 11-10-2018 IPR003607 HD/PDEase domain dqs_2420 e470bb1bb065ea9c9ee56d5876584d69 423 Gene3D G3DSA:1.10.3210.10 3 191 9.1E-25 T 11-10-2018 dqs_2420 e470bb1bb065ea9c9ee56d5876584d69 423 Gene3D G3DSA:1.10.3210.10 219 409 1.7E-49 T 11-10-2018 dqs_2420 e470bb1bb065ea9c9ee56d5876584d69 423 SUPERFAMILY SSF109604 12 185 1.26E-19 T 11-10-2018 dqs_2110 1e402025e689111376af67f58adea7f0 485 Pfam PF01425 Amidase 35 468 1.4E-95 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2110 1e402025e689111376af67f58adea7f0 485 SUPERFAMILY SSF75304 17 478 9.42E-113 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2110 1e402025e689111376af67f58adea7f0 485 Gene3D G3DSA:3.90.1300.10 17 479 6.2E-120 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_2110 1e402025e689111376af67f58adea7f0 485 ProSitePatterns PS00571 Amidases signature. 166 197 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 dqs_2961 5bb1f2aff0575fe6aeea7efdb03f31ac 209 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 7 192 3.4E-70 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 dqs_2961 5bb1f2aff0575fe6aeea7efdb03f31ac 209 Gene3D G3DSA:3.40.50.300 2 205 1.6E-50 T 11-10-2018 dqs_2961 5bb1f2aff0575fe6aeea7efdb03f31ac 209 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 12 196 26.442 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 dqs_2961 5bb1f2aff0575fe6aeea7efdb03f31ac 209 Pfam PF01926 50S ribosome-binding GTPase 26 144 6.4E-19 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_2961 5bb1f2aff0575fe6aeea7efdb03f31ac 209 SUPERFAMILY SSF52540 23 196 3.53E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1846 61d1cd81b059f5725f21e5aed276c0c6 266 Gene3D G3DSA:1.10.12.10 210 266 6.8E-26 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_1846 61d1cd81b059f5725f21e5aed276c0c6 266 SUPERFAMILY SSF52096 11 266 3.66E-79 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_1846 61d1cd81b059f5725f21e5aed276c0c6 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 265 1.2E-58 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_1846 61d1cd81b059f5725f21e5aed276c0c6 266 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 dqs_1846 61d1cd81b059f5725f21e5aed276c0c6 266 Gene3D G3DSA:3.90.226.10 11 208 1.5E-64 T 11-10-2018 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 SUPERFAMILY SSF47729 5 95 2.8E-31 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 4 97 6.5E-45 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 50 69 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 SMART SM00411 5 94 1.5E-41 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 Pfam PF00216 Bacterial DNA-binding protein 5 93 4.5E-30 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 3 99 30.306 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 PRINTS PR01727 Prokaryotic integration host factor signature 44 59 1.5E-14 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 PRINTS PR01727 Prokaryotic integration host factor signature 62 75 1.5E-14 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 PRINTS PR01727 Prokaryotic integration host factor signature 78 92 1.5E-14 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1194 4d9e898cb0ff5a4d0330af016979a7b6 103 Gene3D G3DSA:4.10.520.10 3 100 4.2E-36 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 dqs_1456 dc9c7bf81aa7370150cc48ec5db3cf8f 284 Gene3D G3DSA:1.10.3720.10 21 280 6.2E-68 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1456 dc9c7bf81aa7370150cc48ec5db3cf8f 284 SUPERFAMILY SSF161098 23 272 4.84E-55 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1456 dc9c7bf81aa7370150cc48ec5db3cf8f 284 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 10 274 7.2E-101 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 dqs_1456 dc9c7bf81aa7370150cc48ec5db3cf8f 284 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 15 278 8.6E-131 T 11-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 dqs_1456 dc9c7bf81aa7370150cc48ec5db3cf8f 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 280 1.7E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 327 1.0E-131 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 Gene3D G3DSA:1.10.3730.40 182 338 1.5E-72 T 11-10-2018 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 SUPERFAMILY SSF51735 1 182 4.12E-75 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 4.1E-74 T 11-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 SUPERFAMILY SSF48179 183 331 1.41E-68 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 2.6E-62 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 PIRSF PIRSF000116 4 204 2.6E-49 T 11-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 PIRSF PIRSF000116 201 333 3.9E-14 T 11-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.774 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 dqs_3288 39b7dca7c5527d8490dfbbb71670b045 338 Gene3D G3DSA:3.40.50.720 1 181 1.4E-79 T 11-10-2018 dqs_2124 0daf462f763aaefc7ffb08f387a2f327 245 Pfam PF07729 FCD domain 96 222 1.4E-18 T 11-10-2018 IPR011711 GntR, C-terminal dqs_2124 0daf462f763aaefc7ffb08f387a2f327 245 SMART SM00345 25 83 1.3E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2124 0daf462f763aaefc7ffb08f387a2f327 245 Gene3D G3DSA:1.20.120.530 87 232 1.1E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_2124 0daf462f763aaefc7ffb08f387a2f327 245 SUPERFAMILY SSF46785 17 87 9.73E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2124 0daf462f763aaefc7ffb08f387a2f327 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 1.4E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2124 0daf462f763aaefc7ffb08f387a2f327 245 SMART SM00895 93 223 1.9E-14 T 11-10-2018 IPR011711 GntR, C-terminal dqs_2124 0daf462f763aaefc7ffb08f387a2f327 245 Gene3D G3DSA:1.10.10.10 4 85 7.4E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2124 0daf462f763aaefc7ffb08f387a2f327 245 SUPERFAMILY SSF48008 89 229 5.75E-20 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_1609 826cc31669de5e99c7e7628c48a9d6ec 399 SUPERFAMILY SSF55781 14 159 2.45E-19 T 11-10-2018 dqs_1609 826cc31669de5e99c7e7628c48a9d6ec 399 SMART SM00052 157 394 4.9E-47 T 11-10-2018 IPR001633 EAL domain dqs_1609 826cc31669de5e99c7e7628c48a9d6ec 399 SUPERFAMILY SSF141868 166 395 4.84E-61 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1609 826cc31669de5e99c7e7628c48a9d6ec 399 Pfam PF00563 EAL domain 166 389 3.9E-56 T 11-10-2018 IPR001633 EAL domain dqs_1609 826cc31669de5e99c7e7628c48a9d6ec 399 Gene3D G3DSA:3.30.450.40 4 164 7.8E-13 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_1609 826cc31669de5e99c7e7628c48a9d6ec 399 Gene3D G3DSA:3.20.20.450 165 397 4.7E-63 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1609 826cc31669de5e99c7e7628c48a9d6ec 399 Pfam PF01590 GAF domain 16 148 4.6E-5 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_1609 826cc31669de5e99c7e7628c48a9d6ec 399 SMART SM00065 12 161 1.0E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2516 2ab3ddeecd8c417f24bfc48bc00f8dab 318 SUPERFAMILY SSF48179 185 303 3.74E-26 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_2516 2ab3ddeecd8c417f24bfc48bc00f8dab 318 Gene3D G3DSA:1.10.1040.10 185 313 1.0E-36 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_2516 2ab3ddeecd8c417f24bfc48bc00f8dab 318 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 7 301 7.5E-47 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 dqs_2516 2ab3ddeecd8c417f24bfc48bc00f8dab 318 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 185 303 1.1E-27 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain dqs_2516 2ab3ddeecd8c417f24bfc48bc00f8dab 318 Gene3D G3DSA:3.40.50.720 4 184 1.7E-30 T 11-10-2018 dqs_2516 2ab3ddeecd8c417f24bfc48bc00f8dab 318 Pfam PF02558 Ketopantoate reductase PanE/ApbA 8 146 2.9E-15 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain dqs_2516 2ab3ddeecd8c417f24bfc48bc00f8dab 318 SUPERFAMILY SSF51735 7 132 1.41E-12 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2998 53a18157910d9a98e107c072580878c7 227 Pfam PF02230 Phospholipase/Carboxylesterase 11 220 1.4E-47 T 11-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 dqs_2998 53a18157910d9a98e107c072580878c7 227 Gene3D G3DSA:3.40.50.1820 5 222 2.4E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2998 53a18157910d9a98e107c072580878c7 227 SUPERFAMILY SSF53474 14 223 4.51E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_4097 be62d44e152b734aaa6411c721b9f71b 180 Gene3D G3DSA:3.40.50.850 1 180 8.8E-48 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 dqs_4097 be62d44e152b734aaa6411c721b9f71b 180 Pfam PF00857 Isochorismatase family 9 156 2.0E-22 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 dqs_4097 be62d44e152b734aaa6411c721b9f71b 180 SUPERFAMILY SSF52499 1 178 4.45E-46 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 dqs_1852 597b542836ae46fb1732aaad0c635457 599 Gene3D G3DSA:1.10.540.10 44 160 3.5E-97 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_1852 597b542836ae46fb1732aaad0c635457 599 Gene3D G3DSA:1.20.140.10 285 449 3.5E-97 T 11-10-2018 dqs_1852 597b542836ae46fb1732aaad0c635457 599 Gene3D G3DSA:2.40.110.10 161 284 3.5E-97 T 11-10-2018 dqs_1852 597b542836ae46fb1732aaad0c635457 599 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 34 9.9E-11 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria dqs_1852 597b542836ae46fb1732aaad0c635457 599 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 4.2E-16 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 dqs_1852 597b542836ae46fb1732aaad0c635457 599 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 476 595 1.4E-29 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain dqs_1852 597b542836ae46fb1732aaad0c635457 599 SUPERFAMILY SSF47203 290 460 1.34E-41 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_1852 597b542836ae46fb1732aaad0c635457 599 SUPERFAMILY SSF56645 38 273 7.2E-63 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_1852 597b542836ae46fb1732aaad0c635457 599 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 285 451 1.3E-22 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_1852 597b542836ae46fb1732aaad0c635457 599 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 9.7E-14 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 dqs_1833 f92533a934f9cac8863483e0a134414e 162 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 39 54 - T 11-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 dqs_1833 f92533a934f9cac8863483e0a134414e 162 SUPERFAMILY SSF69765 5 160 3.53E-62 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 dqs_1833 f92533a934f9cac8863483e0a134414e 162 Gene3D G3DSA:3.30.1330.50 3 162 6.6E-66 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 dqs_1833 f92533a934f9cac8863483e0a134414e 162 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 5 160 34.515 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 dqs_1833 f92533a934f9cac8863483e0a134414e 162 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 159 5.8E-62 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 dqs_1833 f92533a934f9cac8863483e0a134414e 162 Pfam PF02542 YgbB family 5 158 1.7E-61 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 dqs_2667 afd3decb567429def575c84e876a5b29 444 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 6 343 3.1E-112 T 11-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase dqs_2667 afd3decb567429def575c84e876a5b29 444 SUPERFAMILY SSF51905 6 272 5.04E-17 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2667 afd3decb567429def575c84e876a5b29 444 Gene3D G3DSA:3.50.50.60 1 425 2.4E-110 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 6 200 2.1E-76 T 11-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00097 Anthranilate synthase component II signature 173 186 2.9E-6 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00097 Anthranilate synthase component II signature 77 88 2.9E-6 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00097 Anthranilate synthase component II signature 50 59 2.9E-6 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 SUPERFAMILY SSF52317 3 233 2.2E-59 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 3 521 56.374 T 11-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 Pfam PF00958 GMP synthase C terminal domain 429 520 3.5E-44 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 Pfam PF02540 NAD synthase 213 288 1.3E-7 T 11-10-2018 IPR022310 NAD/GMP synthase dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 SUPERFAMILY SSF52402 193 415 3.09E-58 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 209 521 2.0E-150 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 6 20 4.3E-5 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 47 61 4.3E-5 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 77 93 4.3E-5 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 Gene3D G3DSA:3.40.50.880 5 202 1.2E-55 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 Pfam PF00117 Glutamine amidotransferase class-I 8 196 6.6E-39 T 11-10-2018 IPR017926 Glutamine amidotransferase dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 173 186 1.6E-7 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 50 59 1.6E-7 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 77 88 1.6E-7 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 Gene3D G3DSA:3.30.300.10 402 521 3.4E-52 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 SUPERFAMILY SSF54810 401 521 4.05E-51 T 11-10-2018 dqs_1704 a495f0dfac4c2380cfeef471837dcfa3 521 Gene3D G3DSA:3.40.50.620 205 401 1.5E-76 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1886 d145c815d8ef356bb8bd7a08423c60ff 183 Pfam PF01814 Hemerythrin HHE cation binding domain 10 138 5.6E-11 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_1246 4d93ea20ff50b03476af43f9e521006f 55 Pfam PF00471 Ribosomal protein L33 7 53 5.6E-18 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1246 4d93ea20ff50b03476af43f9e521006f 55 SUPERFAMILY SSF57829 1 53 9.16E-20 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 dqs_1246 4d93ea20ff50b03476af43f9e521006f 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 2.6E-25 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1246 4d93ea20ff50b03476af43f9e521006f 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 11-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1246 4d93ea20ff50b03476af43f9e521006f 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.168 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1246 4d93ea20ff50b03476af43f9e521006f 55 Gene3D G3DSA:2.20.28.120 1 55 1.1E-29 T 11-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1454 302c336555f556755a9d040730592a5e 361 SMART SM00382 27 214 9.6E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1454 302c336555f556755a9d040730592a5e 361 SUPERFAMILY SSF50331 239 352 4.42E-9 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_1454 302c336555f556755a9d040730592a5e 361 Pfam PF12857 TOBE-like domain 288 350 3.4E-10 T 11-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 dqs_1454 302c336555f556755a9d040730592a5e 361 Pfam PF00005 ABC transporter 18 164 4.0E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1454 302c336555f556755a9d040730592a5e 361 SUPERFAMILY SSF52540 3 246 1.3E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1454 302c336555f556755a9d040730592a5e 361 Gene3D G3DSA:3.40.50.300 2 268 1.6E-82 T 11-10-2018 dqs_1454 302c336555f556755a9d040730592a5e 361 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 241 4.4E-123 T 11-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 dqs_1454 302c336555f556755a9d040730592a5e 361 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3918 2a216775f8c79384104f6213c578c183 210 Pfam PF14681 Uracil phosphoribosyltransferase 7 209 8.1E-76 T 11-10-2018 dqs_3918 2a216775f8c79384104f6213c578c183 210 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 4 210 44.816 T 11-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 dqs_3918 2a216775f8c79384104f6213c578c183 210 SUPERFAMILY SSF53271 6 208 1.57E-68 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like dqs_3918 2a216775f8c79384104f6213c578c183 210 Gene3D G3DSA:3.40.50.2020 4 210 5.0E-80 T 11-10-2018 dqs_3918 2a216775f8c79384104f6213c578c183 210 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 5 209 1.8E-82 T 11-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 dqs_3350 9f3875a35f8da1d77898c16ecb2dbbef 739 SUPERFAMILY SSF52540 1 640 6.66E-176 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3350 9f3875a35f8da1d77898c16ecb2dbbef 739 Gene3D G3DSA:1.10.10.160 112 184 2.4E-93 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily dqs_3350 9f3875a35f8da1d77898c16ecb2dbbef 739 Gene3D G3DSA:3.40.50.300 282 635 2.8E-118 T 11-10-2018 dqs_3350 9f3875a35f8da1d77898c16ecb2dbbef 739 Gene3D G3DSA:1.10.486.10 383 537 2.8E-118 T 11-10-2018 dqs_3350 9f3875a35f8da1d77898c16ecb2dbbef 739 Pfam PF13361 UvrD-like helicase C-terminal domain 278 615 5.4E-70 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 dqs_3350 9f3875a35f8da1d77898c16ecb2dbbef 739 Pfam PF00580 UvrD/REP helicase N-terminal domain 8 272 1.6E-76 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 dqs_3350 9f3875a35f8da1d77898c16ecb2dbbef 739 Gene3D G3DSA:3.40.50.300 8 273 2.4E-93 T 11-10-2018 dqs_0755 d351a872d66f6167737cd00790e14405 337 SUPERFAMILY SSF52540 19 331 4.67E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0755 d351a872d66f6167737cd00790e14405 337 Gene3D G3DSA:1.20.5.170 6 59 3.7E-11 T 11-10-2018 dqs_0755 d351a872d66f6167737cd00790e14405 337 Gene3D G3DSA:1.10.287.130 271 332 3.8E-21 T 11-10-2018 dqs_0755 d351a872d66f6167737cd00790e14405 337 Gene3D G3DSA:3.40.50.300 60 269 5.4E-81 T 11-10-2018 dqs_0755 d351a872d66f6167737cd00790e14405 337 Pfam PF03308 ArgK protein 31 299 5.2E-107 T 11-10-2018 dqs_0755 d351a872d66f6167737cd00790e14405 337 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 28 329 7.3E-103 T 11-10-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 dqs_4027 4f587cb1bb18f43476ef014e8ce16647 403 SUPERFAMILY SSF48371 131 306 4.46E-5 T 11-10-2018 IPR016024 Armadillo-type fold dqs_0373 4a15a000c26554cf08c81c0cbb2e77af 205 Gene3D G3DSA:1.20.1050.10 81 194 3.1E-69 T 11-10-2018 dqs_0373 4a15a000c26554cf08c81c0cbb2e77af 205 Gene3D G3DSA:3.40.30.10 4 197 3.1E-69 T 11-10-2018 dqs_0373 4a15a000c26554cf08c81c0cbb2e77af 205 Pfam PF13410 Glutathione S-transferase, C-terminal domain 125 190 1.0E-9 T 11-10-2018 dqs_0373 4a15a000c26554cf08c81c0cbb2e77af 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 7 75 1.6E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_0373 4a15a000c26554cf08c81c0cbb2e77af 205 SUPERFAMILY SSF47616 76 203 1.2E-24 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_0373 4a15a000c26554cf08c81c0cbb2e77af 205 SUPERFAMILY SSF52833 1 102 4.31E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Pfam PF08447 PAS fold 168 251 7.9E-10 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 387 551 1.3E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Gene3D G3DSA:3.30.70.270 389 565 1.6E-60 T 11-10-2018 dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SUPERFAMILY SSF55073 396 554 1.06E-49 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SUPERFAMILY SSF55785 159 267 7.5E-14 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SUPERFAMILY SSF55785 19 131 3.66E-21 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Pfam PF08448 PAS fold 26 134 8.1E-17 T 11-10-2018 IPR013656 PAS fold-4 dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Pfam PF00563 EAL domain 569 803 1.3E-76 T 11-10-2018 IPR001633 EAL domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SMART SM00052 563 808 1.2E-120 T 11-10-2018 IPR001633 EAL domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SMART SM00086 213 258 19.0 T 11-10-2018 IPR001610 PAC motif dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SMART SM00086 338 380 5.2E-5 T 11-10-2018 IPR001610 PAC motif dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SMART SM00086 92 133 11.0 T 11-10-2018 IPR001610 PAC motif dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Gene3D G3DSA:2.10.70.100 214 259 2.1E-10 T 11-10-2018 dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SMART SM00091 19 85 3.8E-5 T 11-10-2018 IPR000014 PAS domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SMART SM00091 145 212 0.99 T 11-10-2018 IPR000014 PAS domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SMART SM00091 266 332 5.3E-7 T 11-10-2018 IPR000014 PAS domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Gene3D G3DSA:3.20.20.450 566 814 1.6E-105 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Gene3D G3DSA:3.30.450.20 11 144 2.8E-24 T 11-10-2018 dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SMART SM00267 380 553 2.9E-68 T 11-10-2018 IPR000160 GGDEF domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SUPERFAMILY SSF55785 271 378 7.15E-30 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 SUPERFAMILY SSF141868 569 812 1.44E-93 T 11-10-2018 IPR035919 EAL domain superfamily dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Gene3D G3DSA:3.30.450.20 145 212 9.7E-18 T 11-10-2018 dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Gene3D G3DSA:3.30.450.20 262 388 5.0E-37 T 11-10-2018 dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Pfam PF00990 Diguanylate cyclase, GGDEF domain 391 548 7.4E-51 T 11-10-2018 IPR000160 GGDEF domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 Pfam PF00989 PAS fold 270 377 2.3E-16 T 11-10-2018 IPR013767 PAS fold GO:0006355 dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 270 387 9.9E-21 T 11-10-2018 IPR000014 PAS domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 140 3.3E-14 T 11-10-2018 IPR000014 PAS domain dqs_0759 d8b6c7712c1a4c937ae88f3272bc0a90 818 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 158 265 3.1E-7 T 11-10-2018 IPR000014 PAS domain dqs_0065 b0a341272588c07edd273e70b9a451d7 244 SMART SM00382 44 232 7.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0065 b0a341272588c07edd273e70b9a451d7 244 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0065 b0a341272588c07edd273e70b9a451d7 244 Pfam PF00005 ABC transporter 35 184 1.5E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0065 b0a341272588c07edd273e70b9a451d7 244 SUPERFAMILY SSF52540 18 241 2.73E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0065 b0a341272588c07edd273e70b9a451d7 244 Gene3D G3DSA:3.40.50.300 17 244 9.3E-69 T 11-10-2018 dqs_0652 9c177da3f95e389a03c7a0a55d984b20 402 SUPERFAMILY SSF103473 19 398 6.41E-49 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_0652 9c177da3f95e389a03c7a0a55d984b20 402 Pfam PF07690 Major Facilitator Superfamily 28 337 2.3E-28 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_0652 9c177da3f95e389a03c7a0a55d984b20 402 Gene3D G3DSA:1.20.1250.20 18 399 1.7E-41 T 11-10-2018 dqs_2375 ff0749f8de718ffa42002c61428e7d14 269 TIGRFAM TIGR03028 EpsE: polysaccharide export protein EpsE 32 269 8.7E-102 T 11-10-2018 IPR017478 Polysaccharide export EpsE dqs_2375 ff0749f8de718ffa42002c61428e7d14 269 Gene3D G3DSA:3.30.1950.10 37 104 2.8E-10 T 11-10-2018 dqs_2375 ff0749f8de718ffa42002c61428e7d14 269 Pfam PF02563 Polysaccharide biosynthesis/export protein 28 102 2.7E-19 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 dqs_2375 ff0749f8de718ffa42002c61428e7d14 269 Gene3D G3DSA:3.10.560.10 193 267 1.9E-8 T 11-10-2018 dqs_2375 ff0749f8de718ffa42002c61428e7d14 269 Gene3D G3DSA:3.10.560.10 105 192 1.1E-14 T 11-10-2018 dqs_2375 ff0749f8de718ffa42002c61428e7d14 269 Pfam PF10531 SLBB domain 195 242 1.9E-8 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_2375 ff0749f8de718ffa42002c61428e7d14 269 Pfam PF10531 SLBB domain 111 152 1.2E-6 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_2139 4779c43d9040913a000245b7f744adf1 160 Pfam PF00866 Ring hydroxylating beta subunit 16 148 9.7E-29 T 11-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 dqs_2139 4779c43d9040913a000245b7f744adf1 160 SUPERFAMILY SSF54427 4 160 1.93E-44 T 11-10-2018 IPR032710 NTF2-like domain superfamily dqs_2139 4779c43d9040913a000245b7f744adf1 160 Gene3D G3DSA:3.10.450.50 2 160 4.0E-43 T 11-10-2018 dqs_1880 53e7abdc58ebee2c0eed66638a0a914c 249 Gene3D G3DSA:1.20.1260.10 87 248 4.2E-14 T 11-10-2018 IPR012347 Ferritin-like dqs_1880 53e7abdc58ebee2c0eed66638a0a914c 249 Pfam PF00210 Ferritin-like domain 122 243 3.1E-7 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 dqs_1880 53e7abdc58ebee2c0eed66638a0a914c 249 SUPERFAMILY SSF47240 83 243 6.37E-13 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_2685 a5bb77a28e9eb934c3a1e0af741eb0d9 107 SUPERFAMILY SSF54292 3 103 1.57E-32 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2685 a5bb77a28e9eb934c3a1e0af741eb0d9 107 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 40 50 - T 11-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 dqs_2685 a5bb77a28e9eb934c3a1e0af741eb0d9 107 PRINTS PR00355 Adrenodoxin signature 59 73 1.6E-7 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 dqs_2685 a5bb77a28e9eb934c3a1e0af741eb0d9 107 PRINTS PR00355 Adrenodoxin signature 40 50 1.6E-7 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 dqs_2685 a5bb77a28e9eb934c3a1e0af741eb0d9 107 PRINTS PR00355 Adrenodoxin signature 83 91 1.6E-7 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 dqs_2685 a5bb77a28e9eb934c3a1e0af741eb0d9 107 Gene3D G3DSA:3.10.20.30 1 106 2.4E-36 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2685 a5bb77a28e9eb934c3a1e0af741eb0d9 107 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 92 1.6E-14 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_3370 3845b5530fe37ab6053ca0f0238252fa 274 Pfam PF01578 Cytochrome C assembly protein 48 270 2.5E-33 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 dqs_1417 6dc28710c5f6274690b3257098d6563f 147 SUPERFAMILY SSF160719 57 127 1.44E-7 T 11-10-2018 dqs_1417 6dc28710c5f6274690b3257098d6563f 147 Pfam PF04965 Gene 25-like lysozyme 24 123 4.6E-18 T 11-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD dqs_1417 6dc28710c5f6274690b3257098d6563f 147 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 1 145 1.1E-36 T 11-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein dqs_0506 4bf6dd955f33359490992dc9ddf6120e 642 Gene3D G3DSA:1.10.530.10 471 635 6.8E-42 T 11-10-2018 dqs_0506 4bf6dd955f33359490992dc9ddf6120e 642 SUPERFAMILY SSF53955 477 635 1.93E-42 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_0506 4bf6dd955f33359490992dc9ddf6120e 642 Pfam PF14718 Soluble lytic murein transglycosylase L domain 408 462 4.3E-8 T 11-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 dqs_0506 4bf6dd955f33359490992dc9ddf6120e 642 SUPERFAMILY SSF48435 26 474 1.7E-110 T 11-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 dqs_0506 4bf6dd955f33359490992dc9ddf6120e 642 Pfam PF01464 Transglycosylase SLT domain 489 589 3.7E-21 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 dqs_0506 4bf6dd955f33359490992dc9ddf6120e 642 Gene3D G3DSA:1.25.20.10 30 385 3.8E-76 T 11-10-2018 dqs_0899 300987e13ee3a5cf4906bb19980f7064 159 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 4 151 39.445 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0899 300987e13ee3a5cf4906bb19980f7064 159 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 152 5.0E-73 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0899 300987e13ee3a5cf4906bb19980f7064 159 SUPERFAMILY SSF56770 9 153 4.58E-64 T 11-10-2018 dqs_0899 300987e13ee3a5cf4906bb19980f7064 159 Gene3D G3DSA:3.40.50.12280 2 158 1.8E-73 T 11-10-2018 dqs_0899 300987e13ee3a5cf4906bb19980f7064 159 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 37 146 4.9E-23 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0899 300987e13ee3a5cf4906bb19980f7064 159 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0130 796402fdff0653ed5d698cd6589232fc 294 Pfam PF02653 Branched-chain amino acid transport system / permease component 16 282 7.0E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_2170 f1136ae07c4dfdee6fcf837d6dc19a67 127 SUPERFAMILY SSF82649 1 125 1.78E-48 T 11-10-2018 dqs_2170 f1136ae07c4dfdee6fcf837d6dc19a67 127 Gene3D G3DSA:3.90.1010.10 1 127 1.5E-56 T 11-10-2018 dqs_2170 f1136ae07c4dfdee6fcf837d6dc19a67 127 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 4.5E-68 T 11-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 dqs_2170 f1136ae07c4dfdee6fcf837d6dc19a67 127 Pfam PF01592 NifU-like N terminal domain 2 125 5.6E-55 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 Pfam PF00085 Thioredoxin 5 106 2.7E-34 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 6.0E-39 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 Gene3D G3DSA:3.40.30.10 1 108 5.3E-35 T 11-10-2018 dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 SUPERFAMILY SSF52833 3 107 8.76E-40 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 PIRSF PIRSF000077 2 108 3.1E-44 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 PRINTS PR00421 Thioredoxin family signature 32 41 7.3E-10 T 11-10-2018 dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 PRINTS PR00421 Thioredoxin family signature 72 83 7.3E-10 T 11-10-2018 dqs_1138 d83ff8c287f5634ca2d26ff167a37f47 108 PRINTS PR00421 Thioredoxin family signature 24 32 7.3E-10 T 11-10-2018 dqs_1161 5f93ae059673025fa57b79da996938bf 509 Gene3D G3DSA:3.60.20.10 2 414 7.9E-153 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_1161 5f93ae059673025fa57b79da996938bf 509 SUPERFAMILY SSF53271 252 484 1.7E-72 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like dqs_1161 5f93ae059673025fa57b79da996938bf 509 SUPERFAMILY SSF56235 2 259 3.43E-68 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_1161 5f93ae059673025fa57b79da996938bf 509 Gene3D G3DSA:3.40.50.2020 279 443 7.9E-153 T 11-10-2018 dqs_1161 5f93ae059673025fa57b79da996938bf 509 Pfam PF13522 Glutamine amidotransferase domain 64 210 1.2E-15 T 11-10-2018 dqs_1161 5f93ae059673025fa57b79da996938bf 509 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 2.2E-160 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 dqs_1161 5f93ae059673025fa57b79da996938bf 509 Pfam PF00156 Phosphoribosyl transferase domain 283 395 9.1E-10 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 dqs_1161 5f93ae059673025fa57b79da996938bf 509 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 45.404 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 dqs_1161 5f93ae059673025fa57b79da996938bf 509 PIRSF PIRSF000485 1 483 2.2E-159 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 dqs_3827 0efdb1952fc92ad990033f2b85573b42 321 SUPERFAMILY SSF56281 16 311 8.26E-55 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3827 0efdb1952fc92ad990033f2b85573b42 321 Gene3D G3DSA:3.60.15.10 12 242 1.2E-44 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3827 0efdb1952fc92ad990033f2b85573b42 321 Pfam PF00753 Metallo-beta-lactamase superfamily 34 222 2.5E-10 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3827 0efdb1952fc92ad990033f2b85573b42 321 SMART SM00849 34 223 1.4E-14 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 Gene3D G3DSA:3.40.50.300 193 376 5.4E-66 T 11-10-2018 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 SMART SM00382 225 368 4.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 Gene3D G3DSA:1.10.10.60 488 530 9.1E-7 T 11-10-2018 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 SUPERFAMILY SSF46689 417 526 4.35E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 509 529 3.6E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 492 509 3.6E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 Pfam PF02954 Bacterial regulatory protein, Fis family 492 526 3.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 SUPERFAMILY SSF52540 204 447 3.99E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 417 426 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 Pfam PF00158 Sigma-54 interaction domain 205 371 8.6E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 Pfam PF13185 GAF domain 30 173 1.3E-16 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 Gene3D G3DSA:3.30.450.40 11 183 1.4E-38 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 SUPERFAMILY SSF55781 12 172 1.57E-24 T 11-10-2018 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 Gene3D G3DSA:1.10.8.60 377 450 1.2E-20 T 11-10-2018 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 229 242 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_2621 baa3cf68fcacd2826aee48149efb0355 533 SMART SM00065 31 182 6.4E-18 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_2346 aa966802c75899c5ed4b098df0f22b9d 364 Pfam PF02625 XdhC and CoxI family 14 71 8.0E-16 T 11-10-2018 IPR003777 XdhC- CoxI dqs_2346 aa966802c75899c5ed4b098df0f22b9d 364 Pfam PF13478 XdhC Rossmann domain 194 335 3.5E-34 T 11-10-2018 IPR027051 XdhC Rossmann domain dqs_2346 aa966802c75899c5ed4b098df0f22b9d 364 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 21 336 6.4E-85 T 11-10-2018 IPR014308 Xanthine dehydrogenase accessory protein XdhC dqs_2346 aa966802c75899c5ed4b098df0f22b9d 364 Gene3D G3DSA:3.40.50.720 192 340 3.2E-34 T 11-10-2018 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SMART SM00388 672 742 4.9E-5 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SMART SM00086 610 650 98.0 T 11-10-2018 IPR001610 PAC motif dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SMART SM00086 360 398 0.0011 T 11-10-2018 IPR001610 PAC motif dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SMART SM00086 484 526 4.9E-6 T 11-10-2018 IPR001610 PAC motif dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Pfam PF13426 PAS domain 427 525 3.6E-12 T 11-10-2018 IPR000014 PAS domain dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 288 405 4.9E-22 T 11-10-2018 IPR000014 PAS domain dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 536 655 3.5E-7 T 11-10-2018 IPR000014 PAS domain dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 408 533 1.9E-24 T 11-10-2018 IPR000014 PAS domain dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SUPERFAMILY SSF55874 741 893 3.67E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SMART SM00091 289 355 2.0E-8 T 11-10-2018 IPR000014 PAS domain dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SMART SM00091 538 602 11.0 T 11-10-2018 IPR000014 PAS domain dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SMART SM00091 410 477 2.7E-6 T 11-10-2018 IPR000014 PAS domain dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SUPERFAMILY SSF55785 395 524 1.34E-25 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SUPERFAMILY SSF55785 523 648 3.05E-11 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Gene3D G3DSA:3.30.450.20 411 536 1.9E-22 T 11-10-2018 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Gene3D G3DSA:3.30.450.20 291 410 6.5E-23 T 11-10-2018 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SUPERFAMILY SSF55785 294 401 7.57E-24 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 785 894 5.3E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Gene3D G3DSA:3.30.565.10 741 901 2.7E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Pfam PF13188 PAS domain 538 589 2.2E-5 T 11-10-2018 IPR000014 PAS domain dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SUPERFAMILY SSF47384 663 739 2.35E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 PRINTS PR00344 Bacterial sensor protein C-terminal signature 826 840 1.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 PRINTS PR00344 Bacterial sensor protein C-terminal signature 844 854 1.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 PRINTS PR00344 Bacterial sensor protein C-terminal signature 879 892 1.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 PRINTS PR00344 Bacterial sensor protein C-terminal signature 855 873 1.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Gene3D G3DSA:1.10.287.130 677 739 2.5E-19 T 11-10-2018 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Pfam PF08447 PAS fold 313 385 2.4E-14 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 Gene3D G3DSA:3.30.450.20 537 664 3.2E-10 T 11-10-2018 dqs_1497 10db5bfe83e35f927784aed35b7b812c 904 SMART SM00387 784 895 4.1E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0121 3a85a420df18a8fca74e84e1e7024a81 328 SUPERFAMILY SSF51735 137 295 2.34E-21 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0121 3a85a420df18a8fca74e84e1e7024a81 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 133 2.2E-35 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 dqs_0121 3a85a420df18a8fca74e84e1e7024a81 328 Gene3D G3DSA:3.40.50.720 147 276 9.3E-88 T 11-10-2018 dqs_0121 3a85a420df18a8fca74e84e1e7024a81 328 SMART SM00829 10 325 0.0012 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 dqs_0121 3a85a420df18a8fca74e84e1e7024a81 328 Gene3D G3DSA:3.90.180.10 5 317 9.3E-88 T 11-10-2018 dqs_0121 3a85a420df18a8fca74e84e1e7024a81 328 SUPERFAMILY SSF50129 1 158 1.05E-53 T 11-10-2018 IPR011032 GroES-like superfamily dqs_0121 3a85a420df18a8fca74e84e1e7024a81 328 TIGRFAM TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein 12 326 1.1E-99 T 11-10-2018 IPR014187 Alcohol dehydrogenase, zinc-binding type 2 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 dqs_0121 3a85a420df18a8fca74e84e1e7024a81 328 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 SMART SM00388 619 684 4.2E-25 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 PRINTS PR00344 Bacterial sensor protein C-terminal signature 767 781 2.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 PRINTS PR00344 Bacterial sensor protein C-terminal signature 785 795 2.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 PRINTS PR00344 Bacterial sensor protein C-terminal signature 826 839 2.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 PRINTS PR00344 Bacterial sensor protein C-terminal signature 802 820 2.3E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 Pfam PF00512 His Kinase A (phospho-acceptor) domain 619 684 6.1E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 Gene3D G3DSA:3.30.565.10 686 842 8.9E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_4090 168c4a01e04999887bc80e153b4aff01 852 SMART SM00304 552 604 3.8E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 SUPERFAMILY SSF55874 673 842 1.57E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_4090 168c4a01e04999887bc80e153b4aff01 852 Pfam PF00672 HAMP domain 554 599 8.8E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 SMART SM00387 731 842 3.7E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_4090 168c4a01e04999887bc80e153b4aff01 852 Gene3D G3DSA:1.10.287.130 609 685 2.2E-26 T 11-10-2018 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 SUPERFAMILY SSF158472 553 601 9.02E-8 T 11-10-2018 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 SUPERFAMILY SSF47384 604 685 6.08E-23 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 Gene3D G3DSA:1.20.1480.50 517 608 7.4E-10 T 11-10-2018 dqs_4090 168c4a01e04999887bc80e153b4aff01 852 SUPERFAMILY SSF103190 182 316 1.65E-6 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_4090 168c4a01e04999887bc80e153b4aff01 852 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 731 840 1.3E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1424 9874b102329870f15eaa799252dfbb18 497 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 23 493 2.4E-212 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath dqs_1424 9874b102329870f15eaa799252dfbb18 497 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 71 493 2.6E-191 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 SUPERFAMILY SSF50974 19 315 5.75E-86 T 11-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 Gene3D G3DSA:2.130.10.10 117 316 2.7E-68 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 31 155 2.1E-10 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 Pfam PF10282 Lactonase, 7-bladed beta-propeller 175 294 2.0E-13 T 11-10-2018 IPR019405 Lactonase, 7-bladed beta propeller dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 191 224 2.2E-8 T 11-10-2018 IPR011964 YVTN beta-propeller repeat dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 275 315 8.5E-16 T 11-10-2018 IPR011964 YVTN beta-propeller repeat dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 28 62 5.4E-10 T 11-10-2018 IPR011964 YVTN beta-propeller repeat dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 233 274 8.7E-15 T 11-10-2018 IPR011964 YVTN beta-propeller repeat dqs_3075 fda4bc1f73fd6738e1fd14d131ee9ad9 316 Gene3D G3DSA:2.130.10.10 17 116 2.1E-20 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_3521 e5d2fefa4653c968e170382a6ebe0b72 151 Pfam PF00072 Response regulator receiver domain 17 133 2.0E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3521 e5d2fefa4653c968e170382a6ebe0b72 151 Gene3D G3DSA:3.40.50.2300 10 149 5.6E-30 T 11-10-2018 dqs_3521 e5d2fefa4653c968e170382a6ebe0b72 151 SMART SM00448 15 135 3.2E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3521 e5d2fefa4653c968e170382a6ebe0b72 151 SUPERFAMILY SSF52172 14 136 9.96E-28 T 11-10-2018 IPR011006 CheY-like superfamily dqs_4111 2068094c89fda25f36e778456577d5df 246 Gene3D G3DSA:3.40.50.150 40 246 2.1E-67 T 11-10-2018 dqs_4111 2068094c89fda25f36e778456577d5df 246 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 63 245 1.2E-54 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 dqs_4111 2068094c89fda25f36e778456577d5df 246 SUPERFAMILY SSF53335 28 245 2.71E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_4111 2068094c89fda25f36e778456577d5df 246 Pfam PF02390 Putative methyltransferase 74 241 4.2E-53 T 11-10-2018 dqs_4111 2068094c89fda25f36e778456577d5df 246 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 34 246 30.076 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 Pfam PF00005 ABC transporter 45 188 2.8E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 SMART SM00382 51 238 2.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 Gene3D G3DSA:3.40.50.300 35 257 8.9E-58 T 11-10-2018 dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 SUPERFAMILY SSF52540 36 250 1.08E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 Gene3D G3DSA:2.40.50.100 320 384 1.2E-14 T 11-10-2018 dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 30 383 1.5E-148 T 11-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 Pfam PF03459 TOBE domain 321 383 3.8E-14 T 11-10-2018 IPR005116 Transport-associated OB, type 1 dqs_3986 76932c91c9a0608030fcf466cb0b2228 385 SUPERFAMILY SSF50331 266 383 4.68E-20 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_1654 c4a3d6a05e493d73471b3b7d0082dc70 283 Pfam PF07589 PEP-CTERM motif 252 275 2.3E-6 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_1654 c4a3d6a05e493d73471b3b7d0082dc70 283 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 153 174 0.0033 T 11-10-2018 IPR006530 YD repeat dqs_1654 c4a3d6a05e493d73471b3b7d0082dc70 283 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 253 275 4.5E-4 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 SUPERFAMILY SSF81271 392 463 5.23E-20 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 Gene3D G3DSA:3.30.70.260 657 733 7.3E-19 T 11-10-2018 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 SUPERFAMILY SSF109604 28 208 8.47E-52 T 11-10-2018 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 Pfam PF13328 HD domain 35 194 2.3E-56 T 11-10-2018 IPR003607 HD/PDEase domain dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 Pfam PF04607 Region found in RelA / SpoT proteins 253 362 3.9E-36 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 SUPERFAMILY SSF81301 210 382 2.62E-59 T 11-10-2018 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 SMART SM00954 253 363 4.7E-63 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 35 731 2.8E-184 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 SUPERFAMILY SSF55021 657 732 2.42E-13 T 11-10-2018 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 Gene3D G3DSA:3.30.460.10 211 343 3.4E-49 T 11-10-2018 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 Gene3D G3DSA:3.10.20.30 400 469 9.8E-28 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 Gene3D G3DSA:1.10.3210.10 13 209 4.0E-51 T 11-10-2018 dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 Pfam PF13291 ACT domain 657 732 2.9E-19 T 11-10-2018 IPR002912 ACT domain dqs_1838 3bbbcb33dc36d5cc9316ff2858160cf1 733 Pfam PF02824 TGS domain 406 462 5.6E-22 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 dqs_1212 0bee751177538a043d676cab0b2fea3d 201 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 8 179 2.5E-54 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 dqs_1212 0bee751177538a043d676cab0b2fea3d 201 Gene3D G3DSA:3.30.70.1560 68 168 9.6E-40 T 11-10-2018 dqs_1212 0bee751177538a043d676cab0b2fea3d 201 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 39 53 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 dqs_1212 0bee751177538a043d676cab0b2fea3d 201 SUPERFAMILY SSF55120 3 184 2.24E-44 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1212 0bee751177538a043d676cab0b2fea3d 201 Pfam PF00849 RNA pseudouridylate synthase 4 148 1.4E-16 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1212 0bee751177538a043d676cab0b2fea3d 201 Gene3D G3DSA:3.30.70.580 1 67 2.3E-26 T 11-10-2018 dqs_2341 32f1f77279c5f03305df5d22977047b0 235 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 235 98.95 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 dqs_2341 32f1f77279c5f03305df5d22977047b0 235 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 37 215 1.9E-64 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 dqs_2341 32f1f77279c5f03305df5d22977047b0 235 SUPERFAMILY SSF55729 2 223 2.07E-92 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_2341 32f1f77279c5f03305df5d22977047b0 235 Gene3D G3DSA:3.40.630.70 60 233 1.2E-66 T 11-10-2018 dqs_2341 32f1f77279c5f03305df5d22977047b0 235 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 33 202 7.2E-76 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 dqs_2341 32f1f77279c5f03305df5d22977047b0 235 Gene3D G3DSA:2.30.210.20 3 59 2.6E-24 T 11-10-2018 dqs_0262 73a626b79b3915c5b4ee3932c00113b9 172 SUPERFAMILY SSF109635 36 131 8.5E-30 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily dqs_0262 73a626b79b3915c5b4ee3932c00113b9 172 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 50 171 28.107 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 dqs_0262 73a626b79b3915c5b4ee3932c00113b9 172 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 130 165 3.2E-11 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 dqs_0262 73a626b79b3915c5b4ee3932c00113b9 172 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 135 159 - T 11-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site dqs_0262 73a626b79b3915c5b4ee3932c00113b9 172 Gene3D G3DSA:1.20.120.910 39 170 2.7E-39 T 11-10-2018 dqs_0262 73a626b79b3915c5b4ee3932c00113b9 172 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 54 162 2.2E-42 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 dqs_0262 73a626b79b3915c5b4ee3932c00113b9 172 SUPERFAMILY SSF57716 132 169 5.99E-8 T 11-10-2018 dqs_1488 2f236164b997bff2d07c016983262a65 225 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 44 204 2.0E-44 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like dqs_1488 2f236164b997bff2d07c016983262a65 225 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 17 212 8.9E-18 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 dqs_1488 2f236164b997bff2d07c016983262a65 225 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 19 215 29.257 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 dqs_1488 2f236164b997bff2d07c016983262a65 225 SUPERFAMILY SSF89392 33 214 4.71E-47 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX dqs_1488 2f236164b997bff2d07c016983262a65 225 Gene3D G3DSA:2.50.20.10 29 214 2.7E-55 T 11-10-2018 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 SUPERFAMILY SSF52540 339 583 1.18E-92 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 Gene3D G3DSA:3.40.50.300 338 597 3.6E-94 T 11-10-2018 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 SUPERFAMILY SSF52172 753 886 1.71E-26 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 SMART SM00382 373 559 2.2E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 Pfam PF00664 ABC transporter transmembrane region 31 298 9.3E-30 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 SUPERFAMILY SSF55874 597 724 2.63E-9 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 SUPERFAMILY SSF90123 18 336 1.31E-55 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 Gene3D G3DSA:3.40.50.12740 754 904 2.6E-25 T 11-10-2018 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 Pfam PF00072 Response regulator receiver domain 756 877 1.4E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 SMART SM00448 754 877 1.8E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 Pfam PF00005 ABC transporter 366 513 1.2E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 Gene3D G3DSA:3.30.565.10 598 683 3.6E-9 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 ProSitePatterns PS00211 ABC transporters family signature. 485 499 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1970 a98cb2a44d3f750773fcd975aa8ee8d2 907 Gene3D G3DSA:1.20.1560.10 20 337 2.3E-92 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_1749 73272e1bd7b8f08e4f8decfacf89e20f 309 SUPERFAMILY SSF52151 3 305 3.92E-73 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase dqs_1749 73272e1bd7b8f08e4f8decfacf89e20f 309 Gene3D G3DSA:3.40.366.10 4 282 3.1E-95 T 11-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 dqs_1749 73272e1bd7b8f08e4f8decfacf89e20f 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 305 1.1E-34 T 11-10-2018 IPR020801 Polyketide synthase, acyl transferase domain dqs_1749 73272e1bd7b8f08e4f8decfacf89e20f 309 Gene3D G3DSA:3.30.70.250 123 195 3.1E-95 T 11-10-2018 dqs_1749 73272e1bd7b8f08e4f8decfacf89e20f 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 289 5.5E-104 T 11-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 dqs_1749 73272e1bd7b8f08e4f8decfacf89e20f 309 SUPERFAMILY SSF55048 126 195 5.49E-18 T 11-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding dqs_1749 73272e1bd7b8f08e4f8decfacf89e20f 309 PIRSF PIRSF000446 1 309 3.8E-107 T 11-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 dqs_1749 73272e1bd7b8f08e4f8decfacf89e20f 309 Pfam PF00698 Acyl transferase domain 6 289 4.5E-33 T 11-10-2018 IPR014043 Acyl transferase dqs_1165 fa65867ada66958be202af4d08f9784e 193 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 63 75 3.5E-13 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 dqs_1165 fa65867ada66958be202af4d08f9784e 193 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 3.5E-13 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 dqs_1165 fa65867ada66958be202af4d08f9784e 193 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 37 52 3.5E-13 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 dqs_1165 fa65867ada66958be202af4d08f9784e 193 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 58 75 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 dqs_1165 fa65867ada66958be202af4d08f9784e 193 SUPERFAMILY SSF50891 20 183 2.48E-60 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily dqs_1165 fa65867ada66958be202af4d08f9784e 193 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 24 182 1.0E-48 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 dqs_1165 fa65867ada66958be202af4d08f9784e 193 Gene3D G3DSA:2.40.100.10 18 184 4.5E-66 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily dqs_1165 fa65867ada66958be202af4d08f9784e 193 PIRSF PIRSF001467 12 187 2.1E-30 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 dqs_3290 5d4e83667f0351d56c24e467cedc00ee 227 Pfam PF00072 Response regulator receiver domain 6 116 1.4E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3290 5d4e83667f0351d56c24e467cedc00ee 227 SMART SM00448 3 115 1.1E-46 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3290 5d4e83667f0351d56c24e467cedc00ee 227 SMART SM00862 148 222 1.9E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_3290 5d4e83667f0351d56c24e467cedc00ee 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 222 7.6E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_3290 5d4e83667f0351d56c24e467cedc00ee 227 Gene3D G3DSA:3.40.50.2300 1 122 2.1E-41 T 11-10-2018 dqs_3290 5d4e83667f0351d56c24e467cedc00ee 227 Gene3D G3DSA:1.10.10.10 123 226 1.6E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3290 5d4e83667f0351d56c24e467cedc00ee 227 SUPERFAMILY SSF52172 3 169 1.42E-43 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3379 b6573b7ab5a7a56b8fec0fd6509fe169 151 SUPERFAMILY SSF52038 44 133 1.44E-21 T 11-10-2018 IPR035905 Barstar-like superfamily dqs_3379 b6573b7ab5a7a56b8fec0fd6509fe169 151 Gene3D G3DSA:3.30.370.10 42 131 1.5E-9 T 11-10-2018 IPR035905 Barstar-like superfamily dqs_3379 b6573b7ab5a7a56b8fec0fd6509fe169 151 Pfam PF01337 Barstar (barnase inhibitor) 46 128 3.1E-25 T 11-10-2018 IPR000468 Barstar (barnase inhibitor) dqs_3006 1d3d584c2464ec4043054c62a6d790e1 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.4E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3006 1d3d584c2464ec4043054c62a6d790e1 311 SUPERFAMILY SSF46785 4 85 1.9E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3006 1d3d584c2464ec4043054c62a6d790e1 311 Pfam PF03466 LysR substrate binding domain 88 293 7.5E-47 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3006 1d3d584c2464ec4043054c62a6d790e1 311 SUPERFAMILY SSF53850 87 297 1.27E-48 T 11-10-2018 dqs_3006 1d3d584c2464ec4043054c62a6d790e1 311 Gene3D G3DSA:3.40.190.10 163 264 1.9E-72 T 11-10-2018 dqs_3006 1d3d584c2464ec4043054c62a6d790e1 311 Gene3D G3DSA:1.10.10.10 3 87 6.7E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3006 1d3d584c2464ec4043054c62a6d790e1 311 Gene3D G3DSA:3.40.190.10 92 290 1.9E-72 T 11-10-2018 dqs_1033 2c02092e2144ce5ec553ff8e370044f8 199 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 96.753 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 dqs_1033 2c02092e2144ce5ec553ff8e370044f8 199 Pfam PF02132 RecR protein 41 79 1.0E-13 T 11-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger dqs_1033 2c02092e2144ce5ec553ff8e370044f8 199 SMART SM00493 81 166 1.3E-8 T 11-10-2018 IPR006171 TOPRIM domain dqs_1033 2c02092e2144ce5ec553ff8e370044f8 199 Gene3D G3DSA:3.40.1360.10 78 199 4.2E-39 T 11-10-2018 dqs_1033 2c02092e2144ce5ec553ff8e370044f8 199 Gene3D G3DSA:1.10.8.420 1 53 1.1E-18 T 11-10-2018 dqs_1033 2c02092e2144ce5ec553ff8e370044f8 199 SUPERFAMILY SSF111304 5 199 5.89E-70 T 11-10-2018 IPR023627 Recombination protein RecR dqs_1033 2c02092e2144ce5ec553ff8e370044f8 199 TIGRFAM TIGR00615 recR: recombination protein RecR 6 197 2.8E-66 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 dqs_1033 2c02092e2144ce5ec553ff8e370044f8 199 Pfam PF13662 Toprim domain 82 171 5.1E-22 T 11-10-2018 IPR006171 TOPRIM domain dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 Gene3D G3DSA:1.10.8.60 310 381 1.6E-20 T 11-10-2018 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 Gene3D G3DSA:3.40.50.2300 1 123 2.3E-34 T 11-10-2018 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 Gene3D G3DSA:3.40.50.300 124 309 2.3E-65 T 11-10-2018 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 SMART SM00382 158 301 1.1E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 Pfam PF02954 Bacterial regulatory protein, Fis family 420 459 2.1E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 SMART SM00448 2 115 8.7E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 SUPERFAMILY SSF46689 378 462 2.54E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 4 459 2.5E-210 T 11-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 Pfam PF00072 Response regulator receiver domain 4 115 2.2E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 Gene3D G3DSA:1.10.10.60 382 462 1.1E-19 T 11-10-2018 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 442 462 5.0E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 442 5.0E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 SUPERFAMILY SSF52540 137 381 3.47E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 SUPERFAMILY SSF52172 2 183 4.84E-41 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 Pfam PF00158 Sigma-54 interaction domain 138 304 2.5E-69 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_0809 e215f9e332e080d5fa107a44521d8f1d 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 351 360 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_0419 676b34453886f37e338277a4f20e99f4 102 Pfam PF13466 STAS domain 9 87 4.0E-15 T 11-10-2018 IPR002645 STAS domain dqs_0419 676b34453886f37e338277a4f20e99f4 102 Gene3D G3DSA:3.30.750.24 4 93 2.1E-12 T 11-10-2018 IPR036513 STAS domain superfamily dqs_0419 676b34453886f37e338277a4f20e99f4 102 SUPERFAMILY SSF52091 9 91 7.65E-13 T 11-10-2018 IPR036513 STAS domain superfamily dqs_2376 127faa939df1270bfca6a5c332d7368d 299 Gene3D G3DSA:1.10.4030.30 29 115 8.6E-7 T 11-10-2018 dqs_2376 127faa939df1270bfca6a5c332d7368d 299 SUPERFAMILY SSF109998 32 147 2.24E-10 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily dqs_2376 127faa939df1270bfca6a5c332d7368d 299 Pfam PF13145 PPIC-type PPIASE domain 120 236 7.3E-10 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 dqs_2376 127faa939df1270bfca6a5c332d7368d 299 Pfam PF13624 SurA N-terminal domain 9 89 2.2E-7 T 11-10-2018 dqs_2376 127faa939df1270bfca6a5c332d7368d 299 TIGRFAM TIGR02925 cis_trans_EpsD: peptidyl-prolyl cis-trans isomerase, EpsD family 10 234 3.1E-53 T 11-10-2018 IPR014274 Peptidyl-prolyl cis-trans isomerase, EpsD-type dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 SUPERFAMILY SSF52172 4 189 5.41E-45 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 SUPERFAMILY SSF46689 388 440 8.06E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 SMART SM00448 5 116 1.6E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 Pfam PF00072 Response regulator receiver domain 7 116 4.9E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 SMART SM00382 166 309 3.9E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 Gene3D G3DSA:3.40.50.2300 1 136 1.0E-36 T 11-10-2018 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 Gene3D G3DSA:3.40.50.300 137 316 6.8E-61 T 11-10-2018 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 Gene3D G3DSA:1.10.10.60 390 442 1.9E-12 T 11-10-2018 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 SUPERFAMILY SSF52540 146 375 3.04E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 403 420 6.1E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 420 440 6.1E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 Pfam PF02954 Bacterial regulatory protein, Fis family 397 437 1.4E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 Pfam PF00158 Sigma-54 interaction domain 146 313 1.5E-65 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_0458 3436e0106c0dfa3e67e83a7d1d472414 444 Gene3D G3DSA:1.10.8.60 317 389 1.1E-20 T 11-10-2018 dqs_1755 596c253951184100a5f92499fae434cc 199 Gene3D G3DSA:1.10.1740.10 1 122 4.0E-41 T 11-10-2018 dqs_1755 596c253951184100a5f92499fae434cc 199 Pfam PF08281 Sigma-70, region 4 133 182 1.6E-17 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_1755 596c253951184100a5f92499fae434cc 199 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 187 8.4E-31 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_1755 596c253951184100a5f92499fae434cc 199 Pfam PF04542 Sigma-70 region 2 25 92 1.6E-19 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_1755 596c253951184100a5f92499fae434cc 199 Gene3D G3DSA:1.10.10.10 123 192 2.9E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1755 596c253951184100a5f92499fae434cc 199 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_1755 596c253951184100a5f92499fae434cc 199 SUPERFAMILY SSF88659 125 187 2.62E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_1755 596c253951184100a5f92499fae434cc 199 SUPERFAMILY SSF88946 2 110 1.73E-31 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_1755 596c253951184100a5f92499fae434cc 199 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 191 1.0E-104 T 11-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_3716 181d1f854cc3166c2e3c24d495446449 213 SUPERFAMILY SSF56112 24 166 8.38E-15 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 SUPERFAMILY SSF54292 1 88 1.11E-26 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 Pfam PF00970 Oxidoreductase FAD-binding domain 108 200 2.9E-15 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 Gene3D G3DSA:2.40.30.10 105 201 9.5E-25 T 11-10-2018 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 Gene3D G3DSA:3.10.20.30 1 94 6.2E-24 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 SUPERFAMILY SSF52343 191 334 2.36E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 SUPERFAMILY SSF63380 105 201 1.2E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 81 2.8E-15 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 Pfam PF00175 Oxidoreductase NAD-binding domain 212 316 9.7E-17 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 Gene3D G3DSA:3.40.50.80 202 341 8.4E-31 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 151 158 5.7E-27 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 236 245 5.7E-27 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 304 312 5.7E-27 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 134 146 5.7E-27 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 211 230 5.7E-27 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_2000 9f250b1bc9f4fcb7de0ade716780c78d 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 195 204 5.7E-27 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_0577 f11a410756f6af8f430af1150cbfd5d6 222 Pfam PF05494 MlaC protein 49 210 1.0E-51 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC dqs_0577 f11a410756f6af8f430af1150cbfd5d6 222 PIRSF PIRSF004649 16 222 1.5E-68 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC dqs_0577 f11a410756f6af8f430af1150cbfd5d6 222 Gene3D G3DSA:1.10.10.640 85 208 4.3E-54 T 11-10-2018 dqs_0577 f11a410756f6af8f430af1150cbfd5d6 222 Gene3D G3DSA:3.10.450.50 49 183 4.3E-54 T 11-10-2018 dqs_2272 1caaffc570492a5083f46b8ec6db5206 231 Pfam PF04402 Protein of unknown function (DUF541) 32 224 8.5E-24 T 11-10-2018 IPR007497 Protein of unknown function DUF541 dqs_2272 1caaffc570492a5083f46b8ec6db5206 231 Gene3D G3DSA:3.30.110.170 40 222 3.5E-16 T 11-10-2018 dqs_2272 1caaffc570492a5083f46b8ec6db5206 231 Gene3D G3DSA:3.30.70.2970 44 147 3.5E-16 T 11-10-2018 dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 787 1.3E-238 T 11-10-2018 dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 SUPERFAMILY SSF52540 1 327 2.87E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 Gene3D G3DSA:1.10.486.10 429 645 5.0E-134 T 11-10-2018 dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 SUPERFAMILY SSF52540 335 774 3.72E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 Gene3D G3DSA:3.40.50.10930 5 294 7.6E-66 T 11-10-2018 dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 Gene3D G3DSA:3.40.50.300 315 788 5.0E-134 T 11-10-2018 dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 PIRSF PIRSF000980 1 1132 1.8E-296 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 SUPERFAMILY SSF52980 826 1125 1.07E-62 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 Gene3D G3DSA:1.10.10.160 77 191 7.6E-66 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1128 17.665 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 dqs_4002 96e71fc943d4fe298c9d00ba6a688b68 1139 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1082 6.6E-224 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 dqs_0473 375fe8efc8b1df4ea5142e08b60b77af 935 Pfam PF13449 Esterase-like activity of phytase 292 658 7.6E-60 T 11-10-2018 IPR027372 Phytase-like domain dqs_0473 375fe8efc8b1df4ea5142e08b60b77af 935 Gene3D G3DSA:2.130.10.10 40 270 1.4E-15 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_0473 375fe8efc8b1df4ea5142e08b60b77af 935 SUPERFAMILY SSF50956 276 441 1.57E-5 T 11-10-2018 dqs_0473 375fe8efc8b1df4ea5142e08b60b77af 935 SUPERFAMILY SSF50969 61 444 7.85E-15 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like dqs_0876 19771edb5fd68df13388ab89644fcc59 277 SMART SM00382 40 237 2.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0876 19771edb5fd68df13388ab89644fcc59 277 Gene3D G3DSA:3.40.50.300 14 261 4.4E-65 T 11-10-2018 dqs_0876 19771edb5fd68df13388ab89644fcc59 277 SUPERFAMILY SSF52540 14 243 3.59E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0876 19771edb5fd68df13388ab89644fcc59 277 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0876 19771edb5fd68df13388ab89644fcc59 277 Pfam PF00005 ABC transporter 31 180 9.0E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2161 f523771b8cc57beb6d76fc01d4ea49e9 395 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 4 342 7.7E-126 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 dqs_2161 f523771b8cc57beb6d76fc01d4ea49e9 395 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2161 f523771b8cc57beb6d76fc01d4ea49e9 395 SUPERFAMILY SSF52540 3 335 8.23E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2161 f523771b8cc57beb6d76fc01d4ea49e9 395 Pfam PF00437 Type II/IV secretion system protein 8 271 7.9E-39 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2161 f523771b8cc57beb6d76fc01d4ea49e9 395 Gene3D G3DSA:3.40.50.300 101 355 2.6E-87 T 11-10-2018 dqs_2161 f523771b8cc57beb6d76fc01d4ea49e9 395 Gene3D G3DSA:3.30.450.90 2 100 5.7E-26 T 11-10-2018 dqs_3218 ab778a241c5f502f21312f8173b66aa4 130 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 121 7.3E-43 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB dqs_3218 ab778a241c5f502f21312f8173b66aa4 130 PIRSF PIRSF005610 1 119 2.5E-24 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB dqs_2747 b11d7090a354e497c726c08841e3a74b 439 Gene3D G3DSA:2.30.40.10 14 419 1.6E-160 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_2747 b11d7090a354e497c726c08841e3a74b 439 SUPERFAMILY SSF51338 6 417 2.63E-21 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_2747 b11d7090a354e497c726c08841e3a74b 439 Gene3D G3DSA:3.20.20.140 65 355 1.6E-160 T 11-10-2018 dqs_2747 b11d7090a354e497c726c08841e3a74b 439 Pfam PF01979 Amidohydrolase family 61 410 1.2E-74 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 dqs_2747 b11d7090a354e497c726c08841e3a74b 439 Hamap MF_01281 5'-deoxyadenosine deaminase [dadD]. 6 438 39.895 T 11-10-2018 IPR023512 Deaminase MtaD/DadD GO:0019239 dqs_2747 b11d7090a354e497c726c08841e3a74b 439 SUPERFAMILY SSF51556 64 363 1.7E-100 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_1494 e42efba687937751d9aec616522fb948 562 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 144 173 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 dqs_1494 e42efba687937751d9aec616522fb948 562 SUPERFAMILY SSF51230 3 97 2.49E-24 T 11-10-2018 IPR011053 Single hybrid motif dqs_1494 e42efba687937751d9aec616522fb948 562 SUPERFAMILY SSF52777 324 562 1.11E-82 T 11-10-2018 dqs_1494 e42efba687937751d9aec616522fb948 562 Gene3D G3DSA:2.40.50.100 119 197 4.1E-21 T 11-10-2018 dqs_1494 e42efba687937751d9aec616522fb948 562 Gene3D G3DSA:2.40.50.100 3 83 3.0E-22 T 11-10-2018 dqs_1494 e42efba687937751d9aec616522fb948 562 Gene3D G3DSA:4.10.320.10 256 300 6.2E-19 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 dqs_1494 e42efba687937751d9aec616522fb948 562 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 335 562 2.3E-76 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 dqs_1494 e42efba687937751d9aec616522fb948 562 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 dqs_1494 e42efba687937751d9aec616522fb948 562 SUPERFAMILY SSF51230 120 208 1.7E-23 T 11-10-2018 IPR011053 Single hybrid motif dqs_1494 e42efba687937751d9aec616522fb948 562 SUPERFAMILY SSF47005 253 295 4.32E-12 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 dqs_1494 e42efba687937751d9aec616522fb948 562 Pfam PF00364 Biotin-requiring enzyme 122 193 2.7E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment dqs_1494 e42efba687937751d9aec616522fb948 562 Pfam PF00364 Biotin-requiring enzyme 6 76 5.3E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment dqs_1494 e42efba687937751d9aec616522fb948 562 Gene3D G3DSA:3.30.559.10 320 562 2.0E-90 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 dqs_1494 e42efba687937751d9aec616522fb948 562 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 106 562 3.6E-175 T 11-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 dqs_1494 e42efba687937751d9aec616522fb948 562 Pfam PF02817 e3 binding domain 256 290 3.2E-15 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 dqs_0762 30f96bfff264fd9fd5f1c5a1e28000bc 158 SUPERFAMILY SSF54593 4 146 7.33E-18 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_0762 30f96bfff264fd9fd5f1c5a1e28000bc 158 Gene3D G3DSA:3.10.180.10 7 147 9.6E-22 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_0762 30f96bfff264fd9fd5f1c5a1e28000bc 158 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 122 5.0E-23 T 11-10-2018 dqs_1706 c7c0d6bee306134984832ab1d3cced15 267 Gene3D G3DSA:3.40.50.360 1 258 8.7E-101 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_1706 c7c0d6bee306134984832ab1d3cced15 267 Pfam PF02525 Flavodoxin-like fold 1 212 3.5E-55 T 11-10-2018 IPR003680 Flavodoxin-like fold dqs_1706 c7c0d6bee306134984832ab1d3cced15 267 SUPERFAMILY SSF52218 1 257 2.03E-71 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 SUPERFAMILY SSF55174 21 72 3.53E-9 T 11-10-2018 dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 SMART SM00363 22 81 1.5E-6 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 SUPERFAMILY SSF55120 88 312 2.56E-65 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 Gene3D G3DSA:3.30.2350.10 91 313 9.6E-76 T 11-10-2018 dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 137 151 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 305 2.2E-81 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 Pfam PF00849 RNA pseudouridylate synthase 99 246 3.4E-30 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 Gene3D G3DSA:3.10.290.10 11 73 1.3E-14 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_1739 ef357407b853e54fa744dcb0f0321e29 319 Pfam PF01479 S4 domain 22 68 9.3E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3326 4dc5a3b270f1c1a05795ada5181ee6fb 460 Gene3D G3DSA:3.40.50.720 138 253 1.7E-8 T 11-10-2018 dqs_3326 4dc5a3b270f1c1a05795ada5181ee6fb 460 Pfam PF02397 Bacterial sugar transferase 271 454 3.5E-65 T 11-10-2018 IPR003362 Bacterial sugar transferase dqs_3326 4dc5a3b270f1c1a05795ada5181ee6fb 460 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 18 459 2.5E-124 T 11-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase dqs_3326 4dc5a3b270f1c1a05795ada5181ee6fb 460 TIGRFAM TIGR03013 EpsB_2: sugar transferase, PEP-CTERM system associated 20 459 3.0E-156 T 11-10-2018 IPR017464 Sugar transferase, PEP-CTERM system associated dqs_1431 16a789ee8ed20ce0b64b10087f66770f 87 Pfam PF05488 PAAR motif 8 78 2.5E-26 T 11-10-2018 IPR008727 PAAR motif dqs_1431 16a789ee8ed20ce0b64b10087f66770f 87 Gene3D G3DSA:2.60.200.60 17 85 8.0E-13 T 11-10-2018 dqs_0076 17e23467c10eb374be933f7c86ebcda2 372 SUPERFAMILY SSF52096 16 343 2.11E-61 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0076 17e23467c10eb374be933f7c86ebcda2 372 Pfam PF16113 Enoyl-CoA hydratase/isomerase 19 357 1.3E-109 T 11-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 dqs_0076 17e23467c10eb374be933f7c86ebcda2 372 Gene3D G3DSA:3.90.226.10 4 372 5.2E-121 T 11-10-2018 dqs_1884 ac65b3aaf46d41f40f645c78e91ed143 763 SUPERFAMILY SSF53474 106 432 3.21E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1884 ac65b3aaf46d41f40f645c78e91ed143 763 Pfam PF11339 Protein of unknown function (DUF3141) 78 624 5.1E-257 T 11-10-2018 IPR024501 Protein of unknown function DUF3141 dqs_2642 c04917fcc4e4dfc014f27fb3495bee43 614 Pfam PF02080 TrkA-C domain 236 300 8.3E-13 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 dqs_2642 c04917fcc4e4dfc014f27fb3495bee43 614 Pfam PF02080 TrkA-C domain 331 396 5.2E-13 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 dqs_2642 c04917fcc4e4dfc014f27fb3495bee43 614 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 562 578 - T 11-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 dqs_2642 c04917fcc4e4dfc014f27fb3495bee43 614 SUPERFAMILY SSF116726 237 295 6.93E-12 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_2642 c04917fcc4e4dfc014f27fb3495bee43 614 Gene3D G3DSA:3.30.70.1450 328 402 9.6E-14 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_2642 c04917fcc4e4dfc014f27fb3495bee43 614 Gene3D G3DSA:3.30.70.1450 234 314 4.9E-14 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_2642 c04917fcc4e4dfc014f27fb3495bee43 614 Pfam PF03600 Citrate transporter 23 559 5.9E-53 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 dqs_2642 c04917fcc4e4dfc014f27fb3495bee43 614 SUPERFAMILY SSF116726 323 397 4.45E-16 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 dqs_3083 2d2b975e0f733fe6675211a10f1e565a 430 Pfam PF11394 Protein of unknown function (DUF2875) 5 417 1.3E-96 T 11-10-2018 IPR021531 Protein of unknown function DUF2875 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 SUPERFAMILY SSF52833 1 101 9.62E-28 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PIRSF PIRSF000238 1 516 2.2E-265 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 Gene3D G3DSA:3.50.50.60 323 445 4.5E-112 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 463 485 4.1E-41 T 11-10-2018 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 437 453 4.1E-41 T 11-10-2018 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 4.1E-41 T 11-10-2018 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 353 371 4.1E-41 T 11-10-2018 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 311 329 4.1E-41 T 11-10-2018 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 213 499 1.9E-50 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 SUPERFAMILY SSF52833 104 197 6.66E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 Gene3D G3DSA:3.50.50.60 213 503 4.5E-112 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 401 417 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 312 320 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 439 460 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 473 491 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 349 373 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 334 346 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 1.2E-65 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 Pfam PF13192 Thioredoxin domain 125 195 2.5E-7 T 11-10-2018 IPR012336 Thioredoxin-like fold dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 SUPERFAMILY SSF51905 202 509 2.14E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 341 361 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 512 4.8E-247 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 dqs_0845 47a36e05cf6c7e749fd8615946a6ebfe 517 Gene3D G3DSA:3.40.30.80 1 200 2.7E-63 T 11-10-2018 dqs_0369 71341376a1caa1210f0810c24f41306b 323 SUPERFAMILY SSF55831 27 271 2.49E-47 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_0369 71341376a1caa1210f0810c24f41306b 323 Pfam PF00303 Thymidylate synthase 61 225 1.2E-23 T 11-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_0369 71341376a1caa1210f0810c24f41306b 323 PRINTS PR00108 Thymidylate synthase family signature 162 188 8.6E-6 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_0369 71341376a1caa1210f0810c24f41306b 323 PRINTS PR00108 Thymidylate synthase family signature 200 217 8.6E-6 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_0369 71341376a1caa1210f0810c24f41306b 323 PRINTS PR00108 Thymidylate synthase family signature 117 136 8.6E-6 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_0369 71341376a1caa1210f0810c24f41306b 323 Gene3D G3DSA:3.30.572.10 1 234 2.4E-59 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 dqs_2151 95dc3e4ce8361bdf91351a41473648fc 535 Pfam PF00501 AMP-binding enzyme 49 438 1.1E-74 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_2151 95dc3e4ce8361bdf91351a41473648fc 535 Gene3D G3DSA:3.30.300.30 432 535 1.7E-28 T 11-10-2018 dqs_2151 95dc3e4ce8361bdf91351a41473648fc 535 ProSitePatterns PS00455 Putative AMP-binding domain signature. 197 208 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_2151 95dc3e4ce8361bdf91351a41473648fc 535 Pfam PF13193 AMP-binding enzyme C-terminal domain 447 525 1.5E-23 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_2151 95dc3e4ce8361bdf91351a41473648fc 535 SUPERFAMILY SSF56801 27 534 2.09E-136 T 11-10-2018 dqs_2151 95dc3e4ce8361bdf91351a41473648fc 535 Gene3D G3DSA:3.40.50.12780 32 431 1.3E-99 T 11-10-2018 dqs_2387 ba7be2db2dd9dccfeae2803f0abf4b8f 159 Gene3D G3DSA:1.10.760.10 38 149 9.1E-13 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2387 ba7be2db2dd9dccfeae2803f0abf4b8f 159 SUPERFAMILY SSF46626 12 115 1.89E-13 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2387 ba7be2db2dd9dccfeae2803f0abf4b8f 159 Pfam PF00034 Cytochrome c 47 84 1.8E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3583 0e22729927d6cb7b1a0b429b5e766f00 390 Gene3D G3DSA:3.30.1540.10 235 319 1.7E-30 T 11-10-2018 dqs_3583 0e22729927d6cb7b1a0b429b5e766f00 390 Gene3D G3DSA:3.40.50.10540 2 234 2.4E-86 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily dqs_3583 0e22729927d6cb7b1a0b429b5e766f00 390 Pfam PF02515 CoA-transferase family III 10 366 2.6E-103 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 dqs_3583 0e22729927d6cb7b1a0b429b5e766f00 390 SUPERFAMILY SSF89796 7 390 2.88E-125 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily dqs_1888 61b63443c9aa7c07338f97c839025019 164 Pfam PF05239 PRC-barrel domain 56 106 1.2E-7 T 11-10-2018 IPR027275 PRC-barrel domain dqs_1888 61b63443c9aa7c07338f97c839025019 164 SUPERFAMILY SSF50346 18 163 6.67E-15 T 11-10-2018 IPR011033 PRC-barrel-like superfamily dqs_1888 61b63443c9aa7c07338f97c839025019 164 Gene3D G3DSA:2.30.30.240 41 130 8.4E-9 T 11-10-2018 dqs_1151 ab08b21bd58b6e2ca793f0e22aa53dbc 969 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 184 255 1.6E-25 T 11-10-2018 IPR020012 Motility protein FimV, N-terminal dqs_1151 ab08b21bd58b6e2ca793f0e22aa53dbc 969 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 925 968 4.3E-19 T 11-10-2018 IPR020011 Motility protein FimV, C-terminal dqs_1151 ab08b21bd58b6e2ca793f0e22aa53dbc 969 Gene3D G3DSA:1.20.58.2200 908 969 2.5E-20 T 11-10-2018 IPR038440 FimV, C-terminal domain superfamily dqs_1151 ab08b21bd58b6e2ca793f0e22aa53dbc 969 Gene3D G3DSA:3.10.350.10 167 244 3.3E-5 T 11-10-2018 IPR036779 LysM domain superfamily dqs_1060 10a4307fe94562532d78513a6888ef4d 650 SUPERFAMILY SSF56349 473 644 5.89E-11 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 dqs_1060 10a4307fe94562532d78513a6888ef4d 650 Gene3D G3DSA:1.10.443.10 450 648 2.1E-11 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 dqs_1953 0ec3991548c92bb53fd5dd564495880f 326 SUPERFAMILY SSF53448 3 246 2.25E-43 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1953 0ec3991548c92bb53fd5dd564495880f 326 Gene3D G3DSA:3.90.550.10 1 208 1.3E-41 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1953 0ec3991548c92bb53fd5dd564495880f 326 Pfam PF00535 Glycosyl transferase family 2 7 128 9.9E-24 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 SUPERFAMILY SSF82714 183 266 6.28E-15 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Gene3D G3DSA:3.30.70.1440 657 854 2.8E-280 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 SUPERFAMILY SSF82693 136 324 1.96E-19 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Gene3D G3DSA:3.30.70.1430 559 656 2.8E-280 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Pfam PF00873 AcrB/AcrD/AcrF family 5 1015 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Gene3D G3DSA:1.20.1640.10 505 1012 2.8E-280 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 SUPERFAMILY SSF82693 659 840 7.85E-10 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Gene3D G3DSA:3.30.2090.10 179 269 2.8E-280 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 SUPERFAMILY SSF82693 40 134 3.14E-21 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 612 626 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 8.8E-72 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 SUPERFAMILY SSF82714 710 794 5.1E-15 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Gene3D G3DSA:1.20.1640.10 10 504 2.8E-280 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Gene3D G3DSA:3.30.70.1320 135 326 2.8E-280 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Gene3D G3DSA:3.30.70.1430 40 804 2.8E-280 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 SUPERFAMILY SSF82693 557 657 5.75E-15 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 Gene3D G3DSA:3.30.2090.10 708 796 2.8E-280 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 SUPERFAMILY SSF82866 818 1016 3.01E-40 T 11-10-2018 dqs_2465 2ef497edaf6498c7cb9e544ab29984ef 1044 SUPERFAMILY SSF82866 291 491 1.7E-40 T 11-10-2018 dqs_3987 43f21ed55a2c6f6b9e0156515d4efe17 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 219 1.8E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_3987 43f21ed55a2c6f6b9e0156515d4efe17 226 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 216 7.3E-73 T 11-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 dqs_3987 43f21ed55a2c6f6b9e0156515d4efe17 226 SUPERFAMILY SSF161098 5 216 3.92E-49 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3987 43f21ed55a2c6f6b9e0156515d4efe17 226 Gene3D G3DSA:1.10.3720.10 4 223 1.1E-57 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0821 61ec0b6c86fa4bc9028519a2fc3f7f45 426 Pfam PF13088 BNR repeat-like domain 74 403 2.9E-78 T 11-10-2018 IPR011040 Sialidase KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 dqs_0821 61ec0b6c86fa4bc9028519a2fc3f7f45 426 SUPERFAMILY SSF50939 62 421 2.8E-33 T 11-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 dqs_0821 61ec0b6c86fa4bc9028519a2fc3f7f45 426 Gene3D G3DSA:2.120.10.10 59 294 2.2E-16 T 11-10-2018 dqs_1692 16e6f37fb98a0cd5a6ac55c04670b170 263 Gene3D G3DSA:3.40.50.720 1 259 1.5E-55 T 11-10-2018 dqs_1692 16e6f37fb98a0cd5a6ac55c04670b170 263 PIRSF PIRSF000094 1 261 4.1E-115 T 11-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 dqs_1692 16e6f37fb98a0cd5a6ac55c04670b170 263 SUPERFAMILY SSF51735 6 253 1.97E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1692 16e6f37fb98a0cd5a6ac55c04670b170 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 253 1.0E-84 T 11-10-2018 dqs_1692 16e6f37fb98a0cd5a6ac55c04670b170 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1692 16e6f37fb98a0cd5a6ac55c04670b170 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1692 16e6f37fb98a0cd5a6ac55c04670b170 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.7E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 3.3E-159 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 Gene3D G3DSA:1.10.150.300 113 200 7.6E-152 T 11-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 Gene3D G3DSA:3.10.20.30 48 361 7.6E-152 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 Pfam PF01926 50S ribosome-binding GTPase 5 124 8.6E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 Gene3D G3DSA:3.40.50.300 3 278 7.6E-152 T 11-10-2018 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 PIRSF PIRSF006641 1 363 6.7E-153 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 SUPERFAMILY SSF81271 279 359 3.27E-35 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 SUPERFAMILY SSF52540 3 301 2.76E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 45.085 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 1.7E-38 T 11-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.2E-36 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.2E-36 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.2E-36 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0826 3d1a54557a4a8c918c4ce7875b73df4c 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.2E-36 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_3219 ab893f46f4b289461ba8fb6d9697109d 233 SUPERFAMILY SSF46785 158 230 2.46E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3219 ab893f46f4b289461ba8fb6d9697109d 233 SMART SM00100 21 139 1.1E-21 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_3219 ab893f46f4b289461ba8fb6d9697109d 233 Gene3D G3DSA:2.60.120.10 12 153 6.2E-41 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3219 ab893f46f4b289461ba8fb6d9697109d 233 Gene3D G3DSA:1.10.10.10 154 232 3.1E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3219 ab893f46f4b289461ba8fb6d9697109d 233 SMART SM00419 176 224 6.5E-12 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_3219 ab893f46f4b289461ba8fb6d9697109d 233 Pfam PF13545 Crp-like helix-turn-helix domain 159 230 9.8E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_3219 ab893f46f4b289461ba8fb6d9697109d 233 Pfam PF00027 Cyclic nucleotide-binding domain 39 126 2.3E-18 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_3219 ab893f46f4b289461ba8fb6d9697109d 233 SUPERFAMILY SSF51206 16 152 6.81E-34 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_3866 f47849baaf25921b3579004d8d7069cd 140 SUPERFAMILY SSF54593 4 137 1.22E-30 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3866 f47849baaf25921b3579004d8d7069cd 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 130 1.0E-11 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_3866 f47849baaf25921b3579004d8d7069cd 140 Gene3D G3DSA:3.10.180.10 2 140 5.7E-53 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1222 ea6ab20b2ef8af8ab6127777e61abd43 160 Gene3D G3DSA:1.20.120.50 1 135 3.5E-42 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_1222 ea6ab20b2ef8af8ab6127777e61abd43 160 SUPERFAMILY SSF47188 3 129 8.37E-36 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_1222 ea6ab20b2ef8af8ab6127777e61abd43 160 ProSitePatterns PS00550 Hemerythrin family signature. 59 82 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 dqs_1222 ea6ab20b2ef8af8ab6127777e61abd43 160 Pfam PF01814 Hemerythrin HHE cation binding domain 14 125 3.3E-15 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_1222 ea6ab20b2ef8af8ab6127777e61abd43 160 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 6 130 4.0E-40 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 83 107 - T 11-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 Gene3D G3DSA:1.20.120.910 1 120 2.9E-36 T 11-10-2018 dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 PRINTS PR00618 DksA/TraR zinc finger signature 83 94 6.6E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 PRINTS PR00618 DksA/TraR zinc finger signature 95 107 6.6E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 1 119 28.567 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 1 109 9.1E-47 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 SUPERFAMILY SSF57716 80 118 4.47E-11 T 11-10-2018 dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 SUPERFAMILY SSF109635 1 79 1.26E-24 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily dqs_2234 8179ce2dbbb28fddf0f64db63a572f8f 120 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 78 112 1.4E-12 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 dqs_2466 4026693465ab5ab961c5fefa0d8c8286 487 Pfam PF02321 Outer membrane efflux protein 64 252 2.6E-19 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_2466 4026693465ab5ab961c5fefa0d8c8286 487 Pfam PF02321 Outer membrane efflux protein 278 443 1.2E-21 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_2466 4026693465ab5ab961c5fefa0d8c8286 487 Gene3D G3DSA:2.20.200.10 101 350 7.5E-118 T 11-10-2018 dqs_2466 4026693465ab5ab961c5fefa0d8c8286 487 Gene3D G3DSA:1.20.1600.10 54 460 7.5E-118 T 11-10-2018 dqs_2466 4026693465ab5ab961c5fefa0d8c8286 487 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 10 460 1.7E-113 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 dqs_2466 4026693465ab5ab961c5fefa0d8c8286 487 SUPERFAMILY SSF56954 2 463 4.45E-94 T 11-10-2018 dqs_3271 d3a90e1c516503d4677b67765c12b98b 220 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 190 6.1E-32 T 11-10-2018 dqs_3271 d3a90e1c516503d4677b67765c12b98b 220 SUPERFAMILY SSF56784 2 213 1.65E-29 T 11-10-2018 IPR036412 HAD-like superfamily dqs_3271 d3a90e1c516503d4677b67765c12b98b 220 Gene3D G3DSA:3.40.50.1000 4 217 1.3E-70 T 11-10-2018 IPR023214 HAD superfamily dqs_3271 d3a90e1c516503d4677b67765c12b98b 220 Gene3D G3DSA:1.20.1440.100 15 88 1.3E-70 T 11-10-2018 dqs_3271 d3a90e1c516503d4677b67765c12b98b 220 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 203 1.2E-36 T 11-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like dqs_3271 d3a90e1c516503d4677b67765c12b98b 220 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 193 2.5E-19 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SMART SM00316 27 95 0.0015 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SMART SM00316 457 528 1.0E-17 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SMART SM00316 198 268 1.6E-30 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SMART SM00316 111 179 6.0E-7 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SMART SM00316 370 442 2.5E-22 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SMART SM00316 283 355 3.4E-25 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Pfam PF00575 S1 RNA binding domain 111 179 6.1E-10 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Pfam PF00575 S1 RNA binding domain 456 528 4.5E-12 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Pfam PF00575 S1 RNA binding domain 27 93 1.2E-4 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Pfam PF00575 S1 RNA binding domain 198 268 2.0E-23 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Pfam PF00575 S1 RNA binding domain 369 442 3.0E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Pfam PF00575 S1 RNA binding domain 284 355 6.6E-22 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Gene3D G3DSA:2.40.50.140 14 105 2.8E-15 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SUPERFAMILY SSF50249 356 445 8.21E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 11 528 2.0E-205 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Gene3D G3DSA:2.40.50.140 106 189 8.0E-8 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Gene3D G3DSA:2.40.50.140 276 364 2.7E-28 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Gene3D G3DSA:2.40.50.140 365 452 6.7E-25 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Gene3D G3DSA:2.40.50.140 195 275 4.3E-29 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 163 183 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 116 132 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 134 151 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 338 356 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 298 317 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 29 47 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 47 61 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 220 241 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PRINTS PR00681 Ribosomal protein S1 signature 92 111 4.6E-80 T 11-10-2018 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SUPERFAMILY SSF50249 16 120 2.49E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SUPERFAMILY SSF50249 263 361 1.64E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 PIRSF PIRSF002111 2 542 5.9E-216 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SUPERFAMILY SSF50249 437 551 5.0E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SUPERFAMILY SSF50249 111 193 3.88E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 SUPERFAMILY SSF50249 197 285 1.94E-27 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1180 4fa79d0341dd684d5c2a8e0ad6b2a54d 568 Gene3D G3DSA:2.40.50.140 453 535 2.2E-17 T 11-10-2018 dqs_1115 7113d2e95b26e30d76e264e065d3c384 341 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 100 114 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site dqs_1115 7113d2e95b26e30d76e264e065d3c384 341 Pfam PF00348 Polyprenyl synthetase 50 280 8.2E-75 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 dqs_1115 7113d2e95b26e30d76e264e065d3c384 341 Gene3D G3DSA:1.10.600.10 8 341 5.7E-114 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily dqs_1115 7113d2e95b26e30d76e264e065d3c384 341 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site dqs_1115 7113d2e95b26e30d76e264e065d3c384 341 SUPERFAMILY SSF48576 22 340 1.38E-100 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily dqs_2345 8605f61fab7da4773894d4e581a84450 779 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 160 702 4.4E-198 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 dqs_2345 8605f61fab7da4773894d4e581a84450 779 SUPERFAMILY SSF54665 16 140 1.7E-39 T 11-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily dqs_2345 8605f61fab7da4773894d4e581a84450 779 Gene3D G3DSA:3.30.365.10 7 777 1.1E-277 T 11-10-2018 dqs_2345 8605f61fab7da4773894d4e581a84450 779 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 18 772 0.0 T 11-10-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 dqs_2345 8605f61fab7da4773894d4e581a84450 779 SMART SM01008 32 139 8.2E-47 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead dqs_2345 8605f61fab7da4773894d4e581a84450 779 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 32 139 1.9E-26 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead dqs_2345 8605f61fab7da4773894d4e581a84450 779 SUPERFAMILY SSF56003 139 772 2.88E-200 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 dqs_3304 f825b6151a1f651d8578d5696b5bf700 586 ProSitePatterns PS00455 Putative AMP-binding domain signature. 172 183 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_3304 f825b6151a1f651d8578d5696b5bf700 586 Gene3D G3DSA:3.30.300.30 450 567 1.5E-7 T 11-10-2018 dqs_3304 f825b6151a1f651d8578d5696b5bf700 586 Gene3D G3DSA:3.40.50.12780 3 310 9.0E-52 T 11-10-2018 dqs_3304 f825b6151a1f651d8578d5696b5bf700 586 Pfam PF00501 AMP-binding enzyme 15 453 1.1E-74 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_3304 f825b6151a1f651d8578d5696b5bf700 586 SUPERFAMILY SSF56801 7 572 2.88E-105 T 11-10-2018 dqs_3304 f825b6151a1f651d8578d5696b5bf700 586 Gene3D G3DSA:3.40.50.12780 311 446 1.2E-27 T 11-10-2018 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 448 5.7E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1858 449c0a62eed134c20588b150069f2e3c 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 245 298 1.6E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 SMART SM00388 241 300 5.1E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 SUPERFAMILY SSF55874 290 447 7.73E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1858 449c0a62eed134c20588b150069f2e3c 461 Gene3D G3DSA:3.30.565.10 303 456 9.1E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1858 449c0a62eed134c20588b150069f2e3c 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 446 3.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 3.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 3.4E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 Pfam PF00672 HAMP domain 192 235 4.5E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 SMART SM00387 338 449 2.8E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1858 449c0a62eed134c20588b150069f2e3c 461 Gene3D G3DSA:1.10.287.130 192 301 1.6E-18 T 11-10-2018 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 Gene3D G3DSA:3.30.450.300 36 164 4.6E-46 T 11-10-2018 IPR038421 Sensor histidine kinase RisS, periplasmic domain superfamily dqs_1858 449c0a62eed134c20588b150069f2e3c 461 SUPERFAMILY SSF47384 224 298 1.37E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 SMART SM00304 188 240 6.6E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1858 449c0a62eed134c20588b150069f2e3c 461 Pfam PF16524 Periplasmic domain of Sensor histidine kinase RisS 51 159 2.2E-37 T 11-10-2018 IPR032408 Sensor histidine kinase RisS, periplasmic domain dqs_2784 0c435bde9e11f8324ae30e34e444504c 176 Pfam PF14568 SMI1-KNR4 cell-wall 33 165 2.9E-27 T 11-10-2018 dqs_2784 0c435bde9e11f8324ae30e34e444504c 176 Gene3D G3DSA:3.40.1580.10 11 174 3.8E-24 T 11-10-2018 IPR037883 Knr4/Smi1-like domain superfamily dqs_2784 0c435bde9e11f8324ae30e34e444504c 176 SMART SM00860 28 167 8.1E-11 T 11-10-2018 IPR018958 Knr4/Smi1-like domain dqs_2784 0c435bde9e11f8324ae30e34e444504c 176 SUPERFAMILY SSF160631 11 168 4.97E-28 T 11-10-2018 dqs_3225 680cc92c909272a202345cdbdc6be3a9 70 Pfam PF11278 Protein of unknown function (DUF3079) 1 50 3.7E-34 T 11-10-2018 IPR021430 Protein of unknown function DUF3079 dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.7E-6 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.7E-6 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.7E-6 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 SUPERFAMILY SSF81333 3 78 4.18E-20 T 11-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 Gene3D G3DSA:1.20.20.10 1 77 3.1E-28 T 11-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 4.6E-22 T 11-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 11-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 14.561 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 dqs_0163 64ba84b98c52cc192aceb59aca15b30e 81 Pfam PF00137 ATP synthase subunit C 10 72 2.8E-12 T 11-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 dqs_2543 5bb536b8f574751fb3cf48802b60a3b1 326 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 11 303 7.3E-67 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme dqs_2543 5bb536b8f574751fb3cf48802b60a3b1 326 Gene3D G3DSA:3.40.50.1100 46 148 5.5E-123 T 11-10-2018 dqs_2543 5bb536b8f574751fb3cf48802b60a3b1 326 SUPERFAMILY SSF53686 5 313 1.57E-97 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme dqs_2543 5bb536b8f574751fb3cf48802b60a3b1 326 Gene3D G3DSA:3.40.50.1100 12 309 5.5E-123 T 11-10-2018 dqs_2543 5bb536b8f574751fb3cf48802b60a3b1 326 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 314 5.9E-133 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 dqs_2543 5bb536b8f574751fb3cf48802b60a3b1 326 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 dqs_2543 5bb536b8f574751fb3cf48802b60a3b1 326 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 314 2.9E-138 T 11-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 dqs_0157 bcfa1c5f5e913622b7a8e9332f119a96 627 Pfam PF07690 Major Facilitator Superfamily 17 313 4.9E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_0157 bcfa1c5f5e913622b7a8e9332f119a96 627 SUPERFAMILY SSF103473 10 425 2.44E-28 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_0157 bcfa1c5f5e913622b7a8e9332f119a96 627 Pfam PF01553 Acyltransferase 442 568 1.7E-24 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0157 bcfa1c5f5e913622b7a8e9332f119a96 627 SMART SM00563 456 572 7.3E-27 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0157 bcfa1c5f5e913622b7a8e9332f119a96 627 Gene3D G3DSA:1.20.1250.20 4 422 3.5E-27 T 11-10-2018 dqs_0157 bcfa1c5f5e913622b7a8e9332f119a96 627 SUPERFAMILY SSF69593 412 606 7.85E-31 T 11-10-2018 dqs_1223 f1984f510573cdd737019f597dd479ad 801 Gene3D G3DSA:3.90.199.10 75 548 2.0E-186 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 dqs_1223 f1984f510573cdd737019f597dd479ad 801 Gene3D G3DSA:1.10.268.10 434 519 2.0E-186 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 dqs_1223 f1984f510573cdd737019f597dd479ad 801 Gene3D G3DSA:2.120.10.90 562 795 2.8E-22 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal dqs_1223 f1984f510573cdd737019f597dd479ad 801 Gene3D G3DSA:3.30.1360.40 280 396 2.0E-186 T 11-10-2018 dqs_1223 f1984f510573cdd737019f597dd479ad 801 SUPERFAMILY SSF56719 74 548 1.11E-149 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 dqs_1223 f1984f510573cdd737019f597dd479ad 801 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 54 790 1.0E-238 T 11-10-2018 dqs_1223 f1984f510573cdd737019f597dd479ad 801 SUPERFAMILY SSF101904 564 779 1.31E-44 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal dqs_1223 f1984f510573cdd737019f597dd479ad 801 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 75 527 3.5E-131 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_1223 f1984f510573cdd737019f597dd479ad 801 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 706 749 2.7E-5 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 dqs_1223 f1984f510573cdd737019f597dd479ad 801 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 660 698 2.6 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 dqs_1223 f1984f510573cdd737019f597dd479ad 801 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 47 796 32.995 T 11-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 dqs_1223 f1984f510573cdd737019f597dd479ad 801 SMART SM00434 54 526 2.0E-217 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 dqs_0269 0549edacc6cb5d4405da7084e2de4f2c 803 SUPERFAMILY SSF82866 646 784 3.01E-14 T 11-10-2018 dqs_0269 0549edacc6cb5d4405da7084e2de4f2c 803 Pfam PF03176 MMPL family 158 400 2.2E-9 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_0269 0549edacc6cb5d4405da7084e2de4f2c 803 SUPERFAMILY SSF82866 223 400 9.55E-17 T 11-10-2018 dqs_0583 796b3c4a8dfc8745ada6a5c82ac51d96 102 SUPERFAMILY SSF47413 9 79 1.29E-24 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_0583 796b3c4a8dfc8745ada6a5c82ac51d96 102 Gene3D G3DSA:1.10.260.40 7 80 7.5E-32 T 11-10-2018 dqs_0583 796b3c4a8dfc8745ada6a5c82ac51d96 102 Pfam PF13693 Winged helix-turn-helix DNA-binding 14 85 4.3E-29 T 11-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain dqs_3102 bb4a985da947499d3b46d56c2fec924e 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 3.1E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3102 bb4a985da947499d3b46d56c2fec924e 306 Gene3D G3DSA:3.40.190.10 169 267 3.3E-12 T 11-10-2018 dqs_3102 bb4a985da947499d3b46d56c2fec924e 306 Gene3D G3DSA:3.40.190.10 97 277 3.3E-12 T 11-10-2018 dqs_3102 bb4a985da947499d3b46d56c2fec924e 306 Gene3D G3DSA:1.10.10.10 5 92 8.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3102 bb4a985da947499d3b46d56c2fec924e 306 SUPERFAMILY SSF46785 6 91 2.64E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3102 bb4a985da947499d3b46d56c2fec924e 306 SUPERFAMILY SSF53850 93 293 3.44E-26 T 11-10-2018 dqs_3102 bb4a985da947499d3b46d56c2fec924e 306 Pfam PF03466 LysR substrate binding domain 94 291 4.2E-21 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1311 8f99b3ce65a1d25537e9d63cc2efbc75 354 SUPERFAMILY SSF51679 16 337 4.19E-85 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 dqs_1311 8f99b3ce65a1d25537e9d63cc2efbc75 354 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 17 337 8.4E-136 T 11-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 dqs_1311 8f99b3ce65a1d25537e9d63cc2efbc75 354 Pfam PF00296 Luciferase-like monooxygenase 27 314 9.6E-36 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 dqs_1311 8f99b3ce65a1d25537e9d63cc2efbc75 354 Gene3D G3DSA:3.20.20.30 13 344 2.4E-102 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 dqs_1560 22cb09e6d649e1566b800e633537c6d9 237 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 4 211 25.163 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 dqs_1560 22cb09e6d649e1566b800e633537c6d9 237 PIRSF PIRSF006102 3 218 2.4E-68 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 dqs_1560 22cb09e6d649e1566b800e633537c6d9 237 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 201 2.8E-59 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 dqs_1560 22cb09e6d649e1566b800e633537c6d9 237 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 9 209 1.1E-72 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 Pfam PF05524 PEP-utilising enzyme, N-terminal 6 130 7.6E-29 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 SUPERFAMILY SSF47831 28 147 4.32E-27 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 Gene3D G3DSA:1.10.274.10 24 150 5.7E-70 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 Gene3D G3DSA:3.50.30.10 7 239 5.7E-70 T 11-10-2018 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 299 318 2.5E-26 T 11-10-2018 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 453 468 2.5E-26 T 11-10-2018 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 470 485 2.5E-26 T 11-10-2018 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 506 518 2.5E-26 T 11-10-2018 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 Pfam PF00391 PEP-utilising enzyme, mobile domain 161 231 3.2E-23 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 PIRSF PIRSF000732 1 576 9.0E-205 T 11-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 258 546 5.7E-105 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 5 571 1.7E-157 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 Gene3D G3DSA:3.20.20.60 240 575 1.7E-114 T 11-10-2018 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 190 201 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 SUPERFAMILY SSF51621 256 552 9.16E-101 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 453 471 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 dqs_3933 cfa70991c2995b5916600f9a0bce860a 576 SUPERFAMILY SSF52009 129 250 4.97E-31 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 dqs_1806 9eec4d8ad6c682904ee611ba5e56e0f5 256 Gene3D G3DSA:2.160.20.70 140 255 4.5E-27 T 11-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 dqs_1806 9eec4d8ad6c682904ee611ba5e56e0f5 256 SUPERFAMILY SSF63848 143 238 1.7E-26 T 11-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 dqs_1806 9eec4d8ad6c682904ee611ba5e56e0f5 256 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 10 240 8.4E-49 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 dqs_1806 9eec4d8ad6c682904ee611ba5e56e0f5 256 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 145 239 7.2E-26 T 11-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 dqs_1806 9eec4d8ad6c682904ee611ba5e56e0f5 256 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 9 107 7.7E-12 T 11-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 dqs_1806 9eec4d8ad6c682904ee611ba5e56e0f5 256 Gene3D G3DSA:3.30.750.120 4 120 2.9E-14 T 11-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily dqs_1806 9eec4d8ad6c682904ee611ba5e56e0f5 256 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 9 254 23.751 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 dqs_2525 65d6a15a904b908171c039f86168819e 152 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 12 148 1.2E-17 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 dqs_3951 f9cd71c789b7612dafa63c63abdaf651 114 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 111 2.6E-30 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 dqs_3951 f9cd71c789b7612dafa63c63abdaf651 114 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 20.624 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 dqs_3951 f9cd71c789b7612dafa63c63abdaf651 114 PIRSF PIRSF004761 1 114 1.3E-34 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 dqs_3951 f9cd71c789b7612dafa63c63abdaf651 114 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 110 4.9E-31 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 dqs_3951 f9cd71c789b7612dafa63c63abdaf651 114 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 11-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site dqs_3951 f9cd71c789b7612dafa63c63abdaf651 114 Gene3D G3DSA:3.30.2320.80 1 113 1.1E-29 T 11-10-2018 dqs_0011 51c8e55320771fb2fcce6c5cd439b7dd 661 SUPERFAMILY SSF53098 248 430 3.29E-11 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_0011 51c8e55320771fb2fcce6c5cd439b7dd 661 Gene3D G3DSA:3.30.420.10 238 461 1.6E-14 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 Gene3D G3DSA:3.30.870.10 4 187 5.1E-39 T 11-10-2018 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 SMART SM00155 287 314 0.97 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 SMART SM00155 107 134 0.0011 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 SUPERFAMILY SSF56024 190 357 2.69E-40 T 11-10-2018 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 SUPERFAMILY SSF56024 4 170 2.18E-41 T 11-10-2018 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 Hamap MF_01917 Cardiolipin synthase B [clsB]. 1 385 47.987 T 11-10-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 Gene3D G3DSA:3.30.870.10 198 344 2.0E-27 T 11-10-2018 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 Pfam PF13091 PLD-like domain 24 166 5.0E-18 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 dqs_0817 9b6f5b42243c9fc0a1e415c0e238b7d8 385 Pfam PF13091 PLD-like domain 216 338 2.2E-23 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 dqs_2364 4ad2942bb0f6d299fa99f5f803304543 367 SUPERFAMILY SSF51161 257 335 8.98E-13 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_2364 4ad2942bb0f6d299fa99f5f803304543 367 Gene3D G3DSA:3.90.550.10 1 247 3.9E-64 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2364 4ad2942bb0f6d299fa99f5f803304543 367 SUPERFAMILY SSF53448 2 296 1.44E-66 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2364 4ad2942bb0f6d299fa99f5f803304543 367 Pfam PF00483 Nucleotidyl transferase 3 246 4.9E-47 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 dqs_2364 4ad2942bb0f6d299fa99f5f803304543 367 Gene3D G3DSA:2.160.10.10 248 357 4.9E-10 T 11-10-2018 dqs_2364 4ad2942bb0f6d299fa99f5f803304543 367 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 284 317 9.4E-6 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_0357 810a4bf5cdcaa4bf52a0cc52059a77dc 700 Pfam PF13361 UvrD-like helicase C-terminal domain 571 629 2.8E-17 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 dqs_0357 810a4bf5cdcaa4bf52a0cc52059a77dc 700 Gene3D G3DSA:1.10.486.10 415 560 1.6E-69 T 11-10-2018 dqs_0357 810a4bf5cdcaa4bf52a0cc52059a77dc 700 Gene3D G3DSA:3.40.50.300 19 304 1.4E-73 T 11-10-2018 dqs_0357 810a4bf5cdcaa4bf52a0cc52059a77dc 700 SUPERFAMILY SSF52540 12 638 1.78E-123 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0357 810a4bf5cdcaa4bf52a0cc52059a77dc 700 Gene3D G3DSA:3.40.50.300 314 637 1.6E-69 T 11-10-2018 dqs_0357 810a4bf5cdcaa4bf52a0cc52059a77dc 700 Pfam PF13361 UvrD-like helicase C-terminal domain 311 458 1.4E-20 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 dqs_0357 810a4bf5cdcaa4bf52a0cc52059a77dc 700 Pfam PF00580 UvrD/REP helicase N-terminal domain 40 303 1.0E-52 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 dqs_0357 810a4bf5cdcaa4bf52a0cc52059a77dc 700 Gene3D G3DSA:1.10.10.160 137 222 1.4E-73 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 2 545 8.2E-212 T 11-10-2018 IPR026333 ATP-dependent DNA ligase, PP_1105 family dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 238 246 - T 11-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 Pfam PF04675 DNA ligase N terminus 3 160 1.8E-13 T 11-10-2018 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 Gene3D G3DSA:3.30.470.30 209 414 3.2E-46 T 11-10-2018 dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 SUPERFAMILY SSF50249 419 545 1.22E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 SUPERFAMILY SSF56091 208 414 1.09E-54 T 11-10-2018 dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 Gene3D G3DSA:2.40.50.140 418 546 1.4E-30 T 11-10-2018 dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 Pfam PF01068 ATP dependent DNA ligase domain 214 414 1.1E-27 T 11-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 dqs_0455 662326f4e7016d73b89ccb85adc5af69 547 Pfam PF04679 ATP dependent DNA ligase C terminal region 435 530 3.7E-10 T 11-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 Gene3D G3DSA:3.30.260.10 136 410 1.6E-241 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 PRINTS PR00298 60kDa chaperonin signature 398 419 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 PRINTS PR00298 60kDa chaperonin signature 268 291 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 PRINTS PR00298 60kDa chaperonin signature 350 375 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 PRINTS PR00298 60kDa chaperonin signature 27 53 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 PRINTS PR00298 60kDa chaperonin signature 83 110 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 2.0E-259 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 SUPERFAMILY SSF48592 7 521 5.57E-79 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 Hamap MF_00600 60 kDa chaperonin [groL]. 2 545 41.886 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 521 1.9E-99 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 Gene3D G3DSA:1.10.560.10 8 521 1.6E-241 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 Gene3D G3DSA:3.50.7.10 192 372 1.6E-241 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 SUPERFAMILY SSF54849 137 202 5.04E-25 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily dqs_1048 28bd1ef894dd6b2bc15442dbd32daf09 549 SUPERFAMILY SSF52029 184 376 5.68E-84 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily dqs_2018 acdb87eb4c69acaf5f258a9322cf804a 74 Pfam PF10389 Bacteriophage coat protein B 29 73 2.5E-9 T 11-10-2018 IPR008020 Capsid protein G8P dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Pfam PF02913 FAD linked oxidases, C-terminal domain 434 551 9.1E-5 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Pfam PF02913 FAD linked oxidases, C-terminal domain 669 782 5.4E-18 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 SUPERFAMILY SSF55103 403 783 1.53E-37 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 SUPERFAMILY SSF56176 126 398 1.12E-56 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Pfam PF02754 Cysteine-rich domain 1156 1241 0.0055 T 11-10-2018 IPR004017 Cysteine-rich domain dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Pfam PF02754 Cysteine-rich domain 1030 1119 2.5E-6 T 11-10-2018 IPR004017 Cysteine-rich domain dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Pfam PF12447 Protein of unknown function (DUF3683) 3 115 4.1E-51 T 11-10-2018 IPR022153 Protein of unknown function DUF3683 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Pfam PF11880 Domain of unknown function (DUF3400) 1244 1289 3.2E-22 T 11-10-2018 IPR021817 Protein of unknown function DUF3400 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Pfam PF01565 FAD binding domain 165 315 1.3E-25 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Gene3D G3DSA:3.30.70.2740 674 746 2.3E-6 T 11-10-2018 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Pfam PF13183 4Fe-4S dicluster domain 818 897 4.7E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Gene3D G3DSA:1.10.1060.10 797 915 1.2E-5 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 Gene3D G3DSA:3.30.465.40 124 324 7.6E-34 T 11-10-2018 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 SUPERFAMILY SSF46548 794 914 1.2E-14 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_0491 9cb31487cb786e6f4f11bf76edd43b54 1289 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 883 894 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 Gene3D G3DSA:1.10.10.10 7 88 6.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 3.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 3.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 3.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 2.0E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 SUPERFAMILY SSF53850 92 298 2.53E-41 T 11-10-2018 dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 Pfam PF03466 LysR substrate binding domain 91 296 3.4E-38 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 Gene3D G3DSA:3.40.190.10 94 294 3.6E-57 T 11-10-2018 dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 Gene3D G3DSA:3.40.190.10 167 270 3.6E-57 T 11-10-2018 dqs_0030 045a05740c282a2228ff3f9b8af9b5f6 301 SUPERFAMILY SSF46785 9 115 4.79E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 Gene3D G3DSA:3.40.50.2300 11 139 5.5E-32 T 11-10-2018 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 Pfam PF00072 Response regulator receiver domain 15 124 1.6E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 SUPERFAMILY SSF46689 359 457 7.89E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 Gene3D G3DSA:1.10.10.60 410 458 1.3E-10 T 11-10-2018 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 Gene3D G3DSA:1.10.8.60 316 393 3.1E-25 T 11-10-2018 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 438 458 8.5E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 421 438 8.5E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 SMART SM00448 13 124 3.3E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 SUPERFAMILY SSF52172 15 188 1.32E-38 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 Pfam PF00158 Sigma-54 interaction domain 145 311 1.0E-66 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 169 182 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 Gene3D G3DSA:3.40.50.300 140 315 4.0E-60 T 11-10-2018 dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 SMART SM00382 165 308 3.3E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 SUPERFAMILY SSF52540 145 386 1.0E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3495 11ddbeaef4b6bc002ce5172271d1ca87 458 Pfam PF02954 Bacterial regulatory protein, Fis family 419 455 1.7E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3239 38c3f5042fe5b32d5c16f9168309cce5 271 Pfam PF12679 ABC-2 family transporter protein 8 271 2.3E-38 T 11-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 dqs_1523 232ab07e35d41c5cfb1a0d1153ffa099 417 SUPERFAMILY SSF56762 16 417 1.07E-140 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1523 232ab07e35d41c5cfb1a0d1153ffa099 417 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 43 54 - T 11-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1523 232ab07e35d41c5cfb1a0d1153ffa099 417 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 417 50.751 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1523 232ab07e35d41c5cfb1a0d1153ffa099 417 Gene3D G3DSA:1.10.645.20 4 417 3.3E-177 T 11-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1523 232ab07e35d41c5cfb1a0d1153ffa099 417 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 6 417 7.1E-190 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1523 232ab07e35d41c5cfb1a0d1153ffa099 417 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 417 8.4E-126 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1949 7c60bd7f6d5a5187a3dff023cb0ff948 323 Gene3D G3DSA:3.30.420.40 2 313 6.3E-88 T 11-10-2018 dqs_1949 7c60bd7f6d5a5187a3dff023cb0ff948 323 SUPERFAMILY SSF53067 1 319 1.47E-48 T 11-10-2018 dqs_1949 7c60bd7f6d5a5187a3dff023cb0ff948 323 Pfam PF02685 Glucokinase 3 317 3.8E-85 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 dqs_1949 7c60bd7f6d5a5187a3dff023cb0ff948 323 Gene3D G3DSA:3.40.367.20 105 302 6.3E-88 T 11-10-2018 dqs_3832 3ba2b2ff2f77e9ffcb1b654d643d3e4c 209 Pfam PF00034 Cytochrome c 44 96 1.4E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3832 3ba2b2ff2f77e9ffcb1b654d643d3e4c 209 Pfam PF00034 Cytochrome c 131 208 6.8E-11 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3832 3ba2b2ff2f77e9ffcb1b654d643d3e4c 209 SUPERFAMILY SSF46626 122 207 1.55E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3832 3ba2b2ff2f77e9ffcb1b654d643d3e4c 209 Gene3D G3DSA:1.10.760.10 123 209 3.9E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3832 3ba2b2ff2f77e9ffcb1b654d643d3e4c 209 Gene3D G3DSA:1.10.760.10 45 118 1.9E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3832 3ba2b2ff2f77e9ffcb1b654d643d3e4c 209 PIRSF PIRSF000005 4 209 6.6E-36 T 11-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 dqs_3832 3ba2b2ff2f77e9ffcb1b654d643d3e4c 209 SUPERFAMILY SSF46626 41 117 8.33E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3278 6260c21b4dc7b26e2af5dbd13337caaa 148 SUPERFAMILY SSF54631 4 141 3.92E-35 T 11-10-2018 dqs_3278 6260c21b4dc7b26e2af5dbd13337caaa 148 Gene3D G3DSA:3.10.580.10 1 143 2.5E-48 T 11-10-2018 dqs_3278 6260c21b4dc7b26e2af5dbd13337caaa 148 Pfam PF00571 CBS domain 73 125 8.1E-14 T 11-10-2018 IPR000644 CBS domain dqs_3278 6260c21b4dc7b26e2af5dbd13337caaa 148 Pfam PF00571 CBS domain 18 61 6.0E-9 T 11-10-2018 IPR000644 CBS domain dqs_3278 6260c21b4dc7b26e2af5dbd13337caaa 148 SMART SM00116 80 127 1.1E-13 T 11-10-2018 IPR000644 CBS domain dqs_3278 6260c21b4dc7b26e2af5dbd13337caaa 148 SMART SM00116 15 62 1.3E-7 T 11-10-2018 IPR000644 CBS domain dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 496 600 1.0E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 Gene3D G3DSA:3.30.450.20 73 194 2.7E-64 T 11-10-2018 dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 Gene3D G3DSA:3.30.565.10 462 607 4.4E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 SUPERFAMILY SSF55874 464 599 3.8E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 Gene3D G3DSA:3.30.450.20 61 265 2.7E-64 T 11-10-2018 dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 SUPERFAMILY SSF103190 115 205 1.41E-14 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 Pfam PF00512 His Kinase A (phospho-acceptor) domain 387 453 2.4E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 PIRSF PIRSF036431 14 609 2.5E-174 T 11-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 SMART SM00388 387 455 2.0E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 Gene3D G3DSA:1.10.287.130 363 450 1.7E-18 T 11-10-2018 dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 SMART SM00387 495 606 1.8E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 563 3.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 549 3.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 584 3.5E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2070 e07b36c6bc21d5976ff50fdfa34e2cc3 609 SUPERFAMILY SSF47384 383 451 5.49E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_0406 fcf89fa26979514fc81097889c929672 205 Gene3D G3DSA:3.40.30.10 6 204 8.8E-60 T 11-10-2018 dqs_0406 fcf89fa26979514fc81097889c929672 205 PIRSF PIRSF006386 2 205 7.6E-57 T 11-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 dqs_0406 fcf89fa26979514fc81097889c929672 205 SUPERFAMILY SSF52833 4 201 8.11E-46 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0406 fcf89fa26979514fc81097889c929672 205 Pfam PF01323 DSBA-like thioredoxin domain 6 195 3.1E-40 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 dqs_1219 0a2781b89898658b794913aaafd943d9 246 Pfam PF01618 MotA/TolQ/ExbB proton channel family 104 220 1.8E-26 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel dqs_2520 4cc23634aa881c6d84f09e89e3af6fb5 328 SUPERFAMILY SSF53850 82 290 1.99E-12 T 11-10-2018 dqs_2520 4cc23634aa881c6d84f09e89e3af6fb5 328 Gene3D G3DSA:3.40.190.10 130 253 1.3E-111 T 11-10-2018 dqs_2520 4cc23634aa881c6d84f09e89e3af6fb5 328 Gene3D G3DSA:3.40.190.150 32 318 1.3E-111 T 11-10-2018 dqs_2520 4cc23634aa881c6d84f09e89e3af6fb5 328 PIRSF PIRSF017082 1 326 1.5E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 dqs_2520 4cc23634aa881c6d84f09e89e3af6fb5 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 324 1.7E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 dqs_2385 8200c546afb9047254b3cdc85e213b2c 598 Pfam PF06980 Protein of unknown function (DUF1302) 36 598 2.2E-172 T 11-10-2018 IPR010727 Protein of unknown function DUF1302 dqs_1287 860100b3c65b4c424745be2d50e74fbe 210 SUPERFAMILY SSF50249 1 69 2.28E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1287 860100b3c65b4c424745be2d50e74fbe 210 Pfam PF00313 'Cold-shock' DNA-binding domain 4 65 2.5E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 dqs_1287 860100b3c65b4c424745be2d50e74fbe 210 Gene3D G3DSA:2.40.50.140 1 77 2.7E-18 T 11-10-2018 dqs_1287 860100b3c65b4c424745be2d50e74fbe 210 SMART SM00357 4 68 5.9E-8 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 dqs_1287 860100b3c65b4c424745be2d50e74fbe 210 Pfam PF06961 Protein of unknown function (DUF1294) 115 169 8.4E-23 T 11-10-2018 IPR010718 Protein of unknown function DUF1294 dqs_0486 d55d97d86c6d0b3d09f6bd9d32f34a0b 146 Gene3D G3DSA:2.30.290.10 1 143 1.2E-40 T 11-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily dqs_0486 d55d97d86c6d0b3d09f6bd9d32f34a0b 146 SUPERFAMILY SSF141457 1 139 3.92E-35 T 11-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily dqs_0486 d55d97d86c6d0b3d09f6bd9d32f34a0b 146 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 17 145 21.299 T 11-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 dqs_0486 d55d97d86c6d0b3d09f6bd9d32f34a0b 146 Pfam PF02623 FliW protein 19 134 1.5E-29 T 11-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 dqs_3551 3fdcd15f9b8724d14108b966307369ab 109 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 11-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3551 3fdcd15f9b8724d14108b966307369ab 109 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 109 25.388 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3551 3fdcd15f9b8724d14108b966307369ab 109 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 8.5E-45 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3551 3fdcd15f9b8724d14108b966307369ab 109 Pfam PF00237 Ribosomal protein L22p/L17e 6 107 4.0E-34 T 11-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 dqs_3551 3fdcd15f9b8724d14108b966307369ab 109 SUPERFAMILY SSF54843 1 109 4.32E-40 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3551 3fdcd15f9b8724d14108b966307369ab 109 Gene3D G3DSA:3.90.470.10 1 109 2.7E-42 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 dqs_4042 2ed145f72427c5a4a18150b4e45b9a43 168 SUPERFAMILY SSF141452 5 155 6.28E-39 T 11-10-2018 IPR036624 Hcp1-like superfamily dqs_4042 2ed145f72427c5a4a18150b4e45b9a43 168 Gene3D G3DSA:2.30.110.20 3 168 2.5E-46 T 11-10-2018 IPR036624 Hcp1-like superfamily dqs_4042 2ed145f72427c5a4a18150b4e45b9a43 168 Pfam PF05638 Type VI secretion system effector, Hcp 7 146 4.2E-35 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp dqs_3931 2f9a0685116145bdb8413fc76ee39643 127 Gene3D G3DSA:3.40.50.510 1 127 8.3E-34 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 dqs_3931 2f9a0685116145bdb8413fc76ee39643 127 SUPERFAMILY SSF53062 1 126 2.49E-31 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 dqs_3931 2f9a0685116145bdb8413fc76ee39643 127 Pfam PF03610 PTS system fructose IIA component 3 106 7.3E-19 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 Pfam PF03379 CcmB protein 6 219 2.7E-71 T 11-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 PIRSF PIRSF002764 1 222 1.5E-74 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 218 4.2E-70 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 7.3E-62 T 11-10-2018 dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 7.3E-62 T 11-10-2018 dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 7.3E-62 T 11-10-2018 dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 7.3E-62 T 11-10-2018 dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 7.3E-62 T 11-10-2018 dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 157 176 7.3E-62 T 11-10-2018 dqs_4078 7941b578316db17b1a83c2d56f92e50c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 134 157 7.3E-62 T 11-10-2018 dqs_1388 9bed2cc1051a17d3c4b79dae51919336 260 Pfam PF00005 ABC transporter 23 172 1.7E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1388 9bed2cc1051a17d3c4b79dae51919336 260 Gene3D G3DSA:3.40.50.300 4 253 2.5E-58 T 11-10-2018 dqs_1388 9bed2cc1051a17d3c4b79dae51919336 260 SUPERFAMILY SSF52540 6 228 1.28E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1388 9bed2cc1051a17d3c4b79dae51919336 260 SMART SM00382 31 229 9.6E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3454 7f0ebafaf7bf91d37b86d687b1e4afa5 149 SUPERFAMILY SSF54427 9 127 1.35E-21 T 11-10-2018 IPR032710 NTF2-like domain superfamily dqs_3454 7f0ebafaf7bf91d37b86d687b1e4afa5 149 Pfam PF12680 SnoaL-like domain 14 114 1.2E-11 T 11-10-2018 IPR037401 SnoaL-like domain dqs_3454 7f0ebafaf7bf91d37b86d687b1e4afa5 149 Gene3D G3DSA:3.10.450.50 3 124 4.5E-19 T 11-10-2018 dqs_3224 557f88136b7d09e7066501ed5157271d 459 Gene3D G3DSA:1.20.210.10 1 458 1.6E-126 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3224 557f88136b7d09e7066501ed5157271d 459 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 8 436 5.6E-82 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3224 557f88136b7d09e7066501ed5157271d 459 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 196 252 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3224 557f88136b7d09e7066501ed5157271d 459 SUPERFAMILY SSF81442 4 450 6.8E-90 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 Gene3D G3DSA:3.30.540.10 3 144 5.9E-41 T 11-10-2018 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 Pfam PF00459 Inositol monophosphatase family 15 260 8.7E-49 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 87 100 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 SUPERFAMILY SSF56655 13 262 7.07E-72 T 11-10-2018 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 87 103 5.5E-19 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 45 65 5.5E-19 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 136 159 5.5E-19 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 5.5E-19 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 67 83 5.5E-19 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 5.5E-19 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 Gene3D G3DSA:3.40.190.80 147 262 7.2E-34 T 11-10-2018 dqs_3976 a21b40fbb5e7f168a18c3706e2aaa402 263 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 16 261 1.4E-87 T 11-10-2018 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15 dqs_3524 1eda0071c399a66265fa05826b81f7cf 160 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 160 7.7E-56 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 dqs_3524 1eda0071c399a66265fa05826b81f7cf 160 PIRSF PIRSF002070 1 157 1.3E-39 T 11-10-2018 dqs_3524 1eda0071c399a66265fa05826b81f7cf 160 SUPERFAMILY SSF50249 3 160 1.2E-59 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_3524 1eda0071c399a66265fa05826b81f7cf 160 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 37.916 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 dqs_3524 1eda0071c399a66265fa05826b81f7cf 160 Gene3D G3DSA:2.40.50.140 2 141 2.7E-48 T 11-10-2018 dqs_3524 1eda0071c399a66265fa05826b81f7cf 160 Pfam PF00436 Single-strand binding protein family 4 108 1.0E-42 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 dqs_3233 e7e4cd230b5a777126aef72496c92e4b 390 Pfam PF04982 HPP family 57 177 5.3E-39 T 11-10-2018 IPR007065 HPP dqs_3233 e7e4cd230b5a777126aef72496c92e4b 390 SUPERFAMILY SSF54631 231 382 8.47E-31 T 11-10-2018 dqs_3233 e7e4cd230b5a777126aef72496c92e4b 390 SMART SM00116 250 298 2.7E-7 T 11-10-2018 IPR000644 CBS domain dqs_3233 e7e4cd230b5a777126aef72496c92e4b 390 SMART SM00116 334 382 8.8E-6 T 11-10-2018 IPR000644 CBS domain dqs_3233 e7e4cd230b5a777126aef72496c92e4b 390 Pfam PF00571 CBS domain 327 379 2.9E-11 T 11-10-2018 IPR000644 CBS domain dqs_3233 e7e4cd230b5a777126aef72496c92e4b 390 Pfam PF00571 CBS domain 244 295 2.1E-10 T 11-10-2018 IPR000644 CBS domain dqs_3233 e7e4cd230b5a777126aef72496c92e4b 390 Gene3D G3DSA:3.10.580.10 226 384 8.2E-31 T 11-10-2018 dqs_0313 dca68b608ac24bc65ee48cc771f55f11 267 SUPERFAMILY SSF52096 2 266 5.43E-83 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0313 dca68b608ac24bc65ee48cc771f55f11 267 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 dqs_0313 dca68b608ac24bc65ee48cc771f55f11 267 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 9 266 8.7E-121 T 11-10-2018 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 dqs_0313 dca68b608ac24bc65ee48cc771f55f11 267 Gene3D G3DSA:3.90.226.10 1 208 3.7E-72 T 11-10-2018 dqs_0313 dca68b608ac24bc65ee48cc771f55f11 267 Gene3D G3DSA:1.10.12.10 210 267 1.9E-24 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_0313 dca68b608ac24bc65ee48cc771f55f11 267 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 266 8.6E-63 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_2935 4caba8c5cde40637651bb5dfe4908aba 226 SMART SM00862 148 224 3.0E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_2935 4caba8c5cde40637651bb5dfe4908aba 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 224 2.7E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_2935 4caba8c5cde40637651bb5dfe4908aba 226 Pfam PF00072 Response regulator receiver domain 5 114 2.3E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2935 4caba8c5cde40637651bb5dfe4908aba 226 Gene3D G3DSA:1.10.10.10 127 226 7.4E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2935 4caba8c5cde40637651bb5dfe4908aba 226 Gene3D G3DSA:3.40.50.2300 1 126 2.0E-34 T 11-10-2018 dqs_2935 4caba8c5cde40637651bb5dfe4908aba 226 SUPERFAMILY SSF52172 3 186 1.39E-39 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2935 4caba8c5cde40637651bb5dfe4908aba 226 SMART SM00448 3 113 2.2E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2475 93ab38c07699b274b8e330cb7a385dca 485 Gene3D G3DSA:3.40.720.10 256 478 1.7E-8 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 dqs_2475 93ab38c07699b274b8e330cb7a385dca 485 Pfam PF07394 Protein of unknown function (DUF1501) 60 484 3.2E-130 T 11-10-2018 IPR010869 Protein of unknown function DUF1501 dqs_2475 93ab38c07699b274b8e330cb7a385dca 485 SUPERFAMILY SSF53649 316 460 6.11E-20 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 dqs_0381 b14b24c6a0085ff9e2d1fcfbc4fb8ebe 610 Gene3D G3DSA:3.40.640.10 236 496 3.8E-170 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_0381 b14b24c6a0085ff9e2d1fcfbc4fb8ebe 610 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 207 601 3.3E-170 T 11-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 dqs_0381 b14b24c6a0085ff9e2d1fcfbc4fb8ebe 610 SUPERFAMILY SSF53383 203 602 1.21E-124 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_0381 b14b24c6a0085ff9e2d1fcfbc4fb8ebe 610 Pfam PF00266 Aminotransferase class-V 225 593 1.4E-146 T 11-10-2018 IPR000192 Aminotransferase class V domain dqs_0381 b14b24c6a0085ff9e2d1fcfbc4fb8ebe 610 Gene3D G3DSA:3.90.1150.10 208 596 3.8E-170 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 PRINTS PR01438 Universal stress protein signature 155 173 8.5E-16 T 11-10-2018 IPR006015 Universal stress protein A dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 PRINTS PR01438 Universal stress protein signature 274 296 8.5E-16 T 11-10-2018 IPR006015 Universal stress protein A dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 PRINTS PR01438 Universal stress protein signature 256 268 8.5E-16 T 11-10-2018 IPR006015 Universal stress protein A dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 Gene3D G3DSA:3.40.50.620 152 298 9.4E-30 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 SUPERFAMILY SSF52402 8 148 2.01E-26 T 11-10-2018 dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 SUPERFAMILY SSF52402 154 294 4.86E-29 T 11-10-2018 dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 Pfam PF00582 Universal stress protein family 155 294 9.8E-27 T 11-10-2018 IPR006016 UspA dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 Pfam PF00582 Universal stress protein family 8 148 3.1E-21 T 11-10-2018 IPR006016 UspA dqs_3280 d5d27603972de7c40b01f8f0dbdca36a 300 Gene3D G3DSA:3.40.50.620 6 151 6.4E-25 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1401 ec09caf2ea19acef363c455bf4d5033c 127 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 dqs_1401 ec09caf2ea19acef363c455bf4d5033c 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 126 39.731 T 11-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 dqs_1401 ec09caf2ea19acef363c455bf4d5033c 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 4 123 6.4E-44 T 11-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 dqs_1401 ec09caf2ea19acef363c455bf4d5033c 127 SUPERFAMILY SSF51230 4 124 3.87E-39 T 11-10-2018 IPR011053 Single hybrid motif dqs_1401 ec09caf2ea19acef363c455bf4d5033c 127 Pfam PF01597 Glycine cleavage H-protein 8 125 6.9E-42 T 11-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate dqs_1401 ec09caf2ea19acef363c455bf4d5033c 127 Gene3D G3DSA:2.40.50.100 2 127 1.9E-45 T 11-10-2018 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 Pfam PF07670 Nucleoside recognition 367 459 1.7E-10 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 Pfam PF07670 Nucleoside recognition 522 622 4.7E-11 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 Pfam PF07664 Ferrous iron transport protein B C terminus 471 515 4.4E-10 T 11-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 SUPERFAMILY SSF52540 15 172 1.25E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 14 34 2.8E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 35 53 2.8E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 61 76 2.8E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 18 619 8.3E-107 T 11-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 Pfam PF02421 Ferrous iron transport protein B 13 165 1.8E-45 T 11-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 dqs_0674 d98418f10f3ff248e8f4dc662015e8fb 651 Gene3D G3DSA:3.40.50.300 11 190 5.0E-35 T 11-10-2018 dqs_0132 ba15b7f0c97e824d1bba95199f463349 347 Gene3D G3DSA:3.20.20.70 63 317 2.9E-67 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0132 ba15b7f0c97e824d1bba95199f463349 347 SUPERFAMILY SSF102114 99 289 8.76E-11 T 11-10-2018 dqs_0132 ba15b7f0c97e824d1bba95199f463349 347 PIRSF PIRSF006004 1 344 1.5E-91 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 dqs_0132 ba15b7f0c97e824d1bba95199f463349 347 Pfam PF04055 Radical SAM superfamily 101 259 1.4E-10 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_1617 3d731367934d279791c0fa47e9031d2e 930 Pfam PF02463 RecF/RecN/SMC N terminal domain 5 901 1.5E-15 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal dqs_1617 3d731367934d279791c0fa47e9031d2e 930 Gene3D G3DSA:3.40.50.300 745 913 1.8E-13 T 11-10-2018 dqs_1617 3d731367934d279791c0fa47e9031d2e 930 Gene3D G3DSA:3.40.50.300 2 266 7.0E-20 T 11-10-2018 dqs_1617 3d731367934d279791c0fa47e9031d2e 930 SUPERFAMILY SSF75553 408 555 3.01E-5 T 11-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 dqs_1617 3d731367934d279791c0fa47e9031d2e 930 SUPERFAMILY SSF52540 3 899 8.6E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1770 8c92b2eead771d81b384dfad6a64a4bd 249 Gene3D G3DSA:3.20.20.70 1 249 6.6E-96 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1770 8c92b2eead771d81b384dfad6a64a4bd 249 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 3 243 3.1E-92 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 dqs_1770 8c92b2eead771d81b384dfad6a64a4bd 249 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 248 115.851 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 dqs_1770 8c92b2eead771d81b384dfad6a64a4bd 249 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 4 244 1.3E-86 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 dqs_1770 8c92b2eead771d81b384dfad6a64a4bd 249 SUPERFAMILY SSF63892 2 245 1.96E-87 T 11-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 dqs_3029 67f76ac058f141a7251f701d73638c70 242 Gene3D G3DSA:3.90.550.10 1 236 3.1E-49 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3029 67f76ac058f141a7251f701d73638c70 242 Pfam PF00483 Nucleotidyl transferase 3 132 1.4E-21 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 dqs_3029 67f76ac058f141a7251f701d73638c70 242 SUPERFAMILY SSF53448 1 231 3.38E-50 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2296 f65277b03c30ff69188a55fb47199333 250 SUPERFAMILY SSF48317 23 238 4.71E-20 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily dqs_2296 f65277b03c30ff69188a55fb47199333 250 Gene3D G3DSA:1.20.144.10 20 241 4.7E-16 T 11-10-2018 dqs_2296 f65277b03c30ff69188a55fb47199333 250 Pfam PF01569 PAP2 superfamily 108 234 2.9E-20 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase dqs_2296 f65277b03c30ff69188a55fb47199333 250 SMART SM00014 106 229 1.0E-4 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase dqs_2759 19a39e2467159b603407143cda756e49 598 SMART SM00028 522 555 7.9 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2759 19a39e2467159b603407143cda756e49 598 SMART SM00028 479 512 260.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2759 19a39e2467159b603407143cda756e49 598 SMART SM00028 102 135 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2759 19a39e2467159b603407143cda756e49 598 SUPERFAMILY SSF48452 102 336 1.49E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2759 19a39e2467159b603407143cda756e49 598 SUPERFAMILY SSF48452 427 572 6.48E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2759 19a39e2467159b603407143cda756e49 598 Gene3D G3DSA:1.25.40.10 394 586 2.7E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2759 19a39e2467159b603407143cda756e49 598 Gene3D G3DSA:1.25.40.10 101 380 1.5E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2084 29b04803eb85a4f4bb988af719233999 151 Pfam PF03061 Thioesterase superfamily 31 104 2.7E-7 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 dqs_2084 29b04803eb85a4f4bb988af719233999 151 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 21 38 - T 11-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 dqs_2084 29b04803eb85a4f4bb988af719233999 151 SUPERFAMILY SSF54637 11 146 2.75E-38 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_2084 29b04803eb85a4f4bb988af719233999 151 Gene3D G3DSA:3.10.129.10 5 147 6.7E-35 T 11-10-2018 dqs_1738 86510c325132843a460147178d45b64a 1004 Gene3D G3DSA:3.40.1260.20 399 510 1.5E-36 T 11-10-2018 dqs_1738 86510c325132843a460147178d45b64a 1004 Pfam PF10150 Ribonuclease E/G family 120 389 1.7E-94 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 dqs_1738 86510c325132843a460147178d45b64a 1004 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 423 1.1E-160 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 dqs_1738 86510c325132843a460147178d45b64a 1004 Pfam PF00575 S1 RNA binding domain 36 117 1.2E-10 T 11-10-2018 IPR003029 S1 domain GO:0003676 dqs_1738 86510c325132843a460147178d45b64a 1004 Hamap MF_00970 Ribonuclease E [rne]. 1 941 34.063 T 11-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 dqs_1738 86510c325132843a460147178d45b64a 1004 Gene3D G3DSA:2.40.50.140 31 124 8.2E-31 T 11-10-2018 dqs_1738 86510c325132843a460147178d45b64a 1004 SUPERFAMILY SSF50249 40 124 2.06E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1738 86510c325132843a460147178d45b64a 1004 SMART SM00316 37 118 2.1E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_0852 1bdf7cbe1bf248fcb5bfb565bc25fb91 504 Pfam PF00795 Carbon-nitrogen hydrolase 223 463 3.2E-31 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 dqs_0852 1bdf7cbe1bf248fcb5bfb565bc25fb91 504 Gene3D G3DSA:3.60.110.10 219 463 4.3E-17 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily dqs_0852 1bdf7cbe1bf248fcb5bfb565bc25fb91 504 SUPERFAMILY SSF56317 216 473 5.23E-41 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily dqs_0852 1bdf7cbe1bf248fcb5bfb565bc25fb91 504 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 54 441 8.3E-92 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 dqs_0852 1bdf7cbe1bf248fcb5bfb565bc25fb91 504 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 1 480 22.135 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 dqs_0516 c744f4d4b5c8fccc058ba8a3bc8dc6b9 149 Hamap MF_01114 Regulatory protein RecX [recX]. 2 148 13.532 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 dqs_0516 c744f4d4b5c8fccc058ba8a3bc8dc6b9 149 Gene3D G3DSA:1.10.10.10 52 92 2.7E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0516 c744f4d4b5c8fccc058ba8a3bc8dc6b9 149 Gene3D G3DSA:1.10.10.10 6 50 5.0E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0516 c744f4d4b5c8fccc058ba8a3bc8dc6b9 149 Gene3D G3DSA:1.10.10.10 99 146 3.5E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0516 c744f4d4b5c8fccc058ba8a3bc8dc6b9 149 Pfam PF02631 RecX family 30 143 1.4E-28 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 dqs_4079 6208724834cd75ad52a9510fe437b70a 208 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_4079 6208724834cd75ad52a9510fe437b70a 208 SMART SM00382 26 205 2.6E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_4079 6208724834cd75ad52a9510fe437b70a 208 Pfam PF00005 ABC transporter 19 159 4.3E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_4079 6208724834cd75ad52a9510fe437b70a 208 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 196 2.5E-66 T 11-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 dqs_4079 6208724834cd75ad52a9510fe437b70a 208 Gene3D G3DSA:3.40.50.300 1 201 2.6E-43 T 11-10-2018 dqs_4079 6208724834cd75ad52a9510fe437b70a 208 SUPERFAMILY SSF52540 2 190 5.21E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3320 a331887e489ad58c4cdea6afebfc481f 264 Gene3D G3DSA:2.40.10.10 137 263 6.2E-20 T 11-10-2018 dqs_3320 a331887e489ad58c4cdea6afebfc481f 264 Gene3D G3DSA:2.40.10.10 25 134 1.1E-15 T 11-10-2018 dqs_3320 a331887e489ad58c4cdea6afebfc481f 264 Pfam PF13365 Trypsin-like peptidase domain 63 227 1.5E-24 T 11-10-2018 dqs_3320 a331887e489ad58c4cdea6afebfc481f 264 SUPERFAMILY SSF50494 33 260 1.96E-36 T 11-10-2018 IPR009003 Peptidase S1, PA clan dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 TIGRFAM TIGR01056 topB: DNA topoisomerase III 3 645 2.4E-165 T 11-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 SMART SM00436 126 221 5.5E-23 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 Pfam PF01751 Toprim domain 4 131 6.1E-10 T 11-10-2018 IPR006171 TOPRIM domain dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 SUPERFAMILY SSF56712 3 618 6.28E-171 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 Gene3D G3DSA:1.10.460.10 160 613 3.1E-161 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 Gene3D G3DSA:1.10.290.10 288 416 3.1E-161 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 Gene3D G3DSA:3.40.50.140 3 153 4.4E-46 T 11-10-2018 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 316 331 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 322 331 6.0E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 528 542 6.0E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 6.0E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 6.0E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 100 113 6.0E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 Gene3D G3DSA:2.70.20.10 215 496 3.1E-161 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 SMART SM00437 279 565 1.9E-72 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 SMART SM00493 3 126 1.4E-12 T 11-10-2018 IPR006171 TOPRIM domain dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 Pfam PF01131 DNA topoisomerase 155 603 1.1E-113 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 Pfam PF13342 C-terminal repeat of topoisomerase 655 713 3.8E-19 T 11-10-2018 IPR025589 Topoisomerase C-terminal repeat dqs_0105 29a7a48b5efefa31f91afb937122d87b 857 Pfam PF13342 C-terminal repeat of topoisomerase 761 821 1.3E-18 T 11-10-2018 IPR025589 Topoisomerase C-terminal repeat dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 46 474 1.5E-147 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 Gene3D G3DSA:2.30.42.10 274 378 1.3E-29 T 11-10-2018 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 SUPERFAMILY SSF50494 43 270 2.34E-64 T 11-10-2018 IPR009003 Peptidase S1, PA clan dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 SUPERFAMILY SSF50156 394 478 1.58E-15 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 Pfam PF13180 PDZ domain 280 370 2.6E-18 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 SUPERFAMILY SSF50156 237 361 1.84E-27 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 391 452 4.0E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 SMART SM00228 393 469 5.0E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 SMART SM00228 279 361 1.6E-15 T 11-10-2018 IPR001478 PDZ domain GO:0005515 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 Gene3D G3DSA:2.40.10.120 44 273 3.3E-79 T 11-10-2018 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 PRINTS PR00834 HtrA/DegQ protease family signature 115 127 8.4E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 PRINTS PR00834 HtrA/DegQ protease family signature 319 331 8.4E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 PRINTS PR00834 HtrA/DegQ protease family signature 137 157 8.4E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 PRINTS PR00834 HtrA/DegQ protease family signature 211 228 8.4E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 PRINTS PR00834 HtrA/DegQ protease family signature 233 250 8.4E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 PRINTS PR00834 HtrA/DegQ protease family signature 177 201 8.4E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 Pfam PF13365 Trypsin-like peptidase domain 106 240 1.9E-33 T 11-10-2018 dqs_0102 d5621bd0f3eed21ead893f13916e4320 479 Gene3D G3DSA:2.30.42.10 393 476 1.8E-18 T 11-10-2018 dqs_0841 ff52b62987acca5bd453b57147205777 382 Gene3D G3DSA:3.40.50.300 168 356 4.9E-108 T 11-10-2018 dqs_0841 ff52b62987acca5bd453b57147205777 382 SMART SM00382 167 302 1.1E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0841 ff52b62987acca5bd453b57147205777 382 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 97 367 4.6E-102 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 dqs_0841 ff52b62987acca5bd453b57147205777 382 Gene3D G3DSA:1.20.120.140 72 366 4.9E-108 T 11-10-2018 dqs_0841 ff52b62987acca5bd453b57147205777 382 Pfam PF02881 SRP54-type protein, helical bundle domain 85 150 1.8E-12 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_0841 ff52b62987acca5bd453b57147205777 382 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 97 368 59.041 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 dqs_0841 ff52b62987acca5bd453b57147205777 382 SUPERFAMILY SSF47364 69 148 3.79E-21 T 11-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 dqs_0841 ff52b62987acca5bd453b57147205777 382 SMART SM00963 74 154 1.1E-22 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_0841 ff52b62987acca5bd453b57147205777 382 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 341 354 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_0841 ff52b62987acca5bd453b57147205777 382 Pfam PF00448 SRP54-type protein, GTPase domain 169 367 3.6E-71 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_0841 ff52b62987acca5bd453b57147205777 382 SUPERFAMILY SSF52540 129 368 2.06E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0841 ff52b62987acca5bd453b57147205777 382 SMART SM00962 168 368 5.5E-111 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 dqs_3469 2a71959fefa402729201070046cf0847 251 SMART SM00331 15 248 1.8E-14 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_3469 2a71959fefa402729201070046cf0847 251 SMART SM00332 1 246 3.2E-19 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_3469 2a71959fefa402729201070046cf0847 251 SUPERFAMILY SSF81606 9 247 3.4E-58 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_3469 2a71959fefa402729201070046cf0847 251 Pfam PF13672 Protein phosphatase 2C 23 210 7.9E-14 T 11-10-2018 dqs_3469 2a71959fefa402729201070046cf0847 251 Gene3D G3DSA:3.60.40.10 3 249 2.1E-61 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_2948 e30c1a9a0759711a79f6ac228664af8e 109 Pfam PF01022 Bacterial regulatory protein, arsR family 28 73 7.9E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2948 e30c1a9a0759711a79f6ac228664af8e 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 4.0E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2948 e30c1a9a0759711a79f6ac228664af8e 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 4.0E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2948 e30c1a9a0759711a79f6ac228664af8e 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 53 4.0E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2948 e30c1a9a0759711a79f6ac228664af8e 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 4.0E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2948 e30c1a9a0759711a79f6ac228664af8e 109 SMART SM00418 21 99 2.0E-27 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2948 e30c1a9a0759711a79f6ac228664af8e 109 SUPERFAMILY SSF46785 8 102 9.5E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2948 e30c1a9a0759711a79f6ac228664af8e 109 Gene3D G3DSA:1.10.10.10 5 101 2.3E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2459 9e345a4c46c8b047c0e2c781d03dfad8 215 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 144 213 2.0E-14 T 11-10-2018 IPR006260 TonB/TolA, C-terminal dqs_2459 9e345a4c46c8b047c0e2c781d03dfad8 215 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 142 213 6.2E-17 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 dqs_2459 9e345a4c46c8b047c0e2c781d03dfad8 215 Gene3D G3DSA:3.30.1150.10 86 214 3.2E-18 T 11-10-2018 dqs_2459 9e345a4c46c8b047c0e2c781d03dfad8 215 PRINTS PR01374 Gram-negative bacterial tonB protein signature 158 176 3.2E-10 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 dqs_2459 9e345a4c46c8b047c0e2c781d03dfad8 215 PRINTS PR01374 Gram-negative bacterial tonB protein signature 56 66 3.2E-10 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 dqs_2459 9e345a4c46c8b047c0e2c781d03dfad8 215 PRINTS PR01374 Gram-negative bacterial tonB protein signature 137 158 3.2E-10 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 dqs_2459 9e345a4c46c8b047c0e2c781d03dfad8 215 SUPERFAMILY SSF74653 109 214 2.35E-16 T 11-10-2018 dqs_1828 a0a994cfcc1eeb3b703e29ef6a7e33e8 226 SMART SM00419 164 215 4.7E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1828 a0a994cfcc1eeb3b703e29ef6a7e33e8 226 Gene3D G3DSA:2.60.120.10 24 142 3.8E-36 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_1828 a0a994cfcc1eeb3b703e29ef6a7e33e8 226 Gene3D G3DSA:1.10.10.10 143 226 3.4E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1828 a0a994cfcc1eeb3b703e29ef6a7e33e8 226 Pfam PF13545 Crp-like helix-turn-helix domain 147 221 3.1E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 dqs_1828 a0a994cfcc1eeb3b703e29ef6a7e33e8 226 SUPERFAMILY SSF51206 34 142 9.56E-26 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like dqs_1828 a0a994cfcc1eeb3b703e29ef6a7e33e8 226 SUPERFAMILY SSF46785 144 221 5.18E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1828 a0a994cfcc1eeb3b703e29ef6a7e33e8 226 Pfam PF00027 Cyclic nucleotide-binding domain 36 109 2.4E-9 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 SMART SM00564 285 312 270.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 SMART SM00564 86 117 4.2 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 SMART SM00564 183 220 0.03 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 SMART SM00564 136 168 1.2E-7 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 SMART SM00564 497 529 0.023 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 36 557 1.8E-195 T 11-10-2018 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 Pfam PF13360 PQQ-like domain 85 218 8.4E-17 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 Pfam PF13360 PQQ-like domain 469 531 2.0E-5 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 SUPERFAMILY SSF46626 593 688 1.4E-11 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 Gene3D G3DSA:2.140.10.10 22 594 2.8E-228 T 11-10-2018 dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 Gene3D G3DSA:1.10.760.10 598 700 5.2E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3157 66d22dbf108f4657fc31811be55f6b1d 703 SUPERFAMILY SSF50998 38 609 5.63E-174 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 Hamap MF_00821 Protein-export protein SecB [secB]. 1 144 32.31 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 Pfam PF02556 Preprotein translocase subunit SecB 3 142 2.6E-55 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 3 142 2.1E-53 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 SUPERFAMILY SSF54611 3 140 6.32E-50 T 11-10-2018 IPR035958 SecB-like superfamily dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 96 118 6.5E-33 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 72 92 6.5E-33 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 122 140 6.5E-33 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 11 28 6.5E-33 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 dqs_2951 f13e00f8dafd00bd0b0cf3ed7071889f 151 Gene3D G3DSA:3.10.420.10 1 149 1.9E-56 T 11-10-2018 IPR035958 SecB-like superfamily dqs_1902 b79a5c7eea2d8aa4287c95510d7908e4 107 SMART SM00749 42 105 4.3E-11 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria dqs_1902 b79a5c7eea2d8aa4287c95510d7908e4 107 Pfam PF04972 BON domain 37 104 1.6E-21 T 11-10-2018 IPR007055 BON domain dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 TIGRFAM TIGR02688 TIGR02688: TIGR02688 family protein 13 462 5.6E-135 T 11-10-2018 IPR014061 Conserved hypothetical protein CHP02688 dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 SUPERFAMILY SSF52540 193 354 1.12E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 SUPERFAMILY SSF54211 503 675 1.63E-22 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 581 600 9.5E-8 T 11-10-2018 dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 611 630 9.5E-8 T 11-10-2018 dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 634 652 9.5E-8 T 11-10-2018 dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 228 247 9.5E-8 T 11-10-2018 dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 TIGRFAM TIGR02653 Lon_rel_chp: conserved hypothetical protein 4 679 2.8E-191 T 11-10-2018 IPR013473 Conserved hypothetical protein CHP02653, peptidase S16 non-peptidase homologue dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 Pfam PF13337 Putative ATP-dependent Lon protease 13 472 7.7E-183 T 11-10-2018 IPR014061 Conserved hypothetical protein CHP02688 dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 519 679 4.4E-9 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 dqs_1075 fae74a4f36e05181a77c2b13ab9d4f85 681 Gene3D G3DSA:3.30.230.10 500 679 4.8E-17 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_3247 0384e02a03770ad032f9ee901be4220a 408 PIRSF PIRSF000726 53 408 5.5E-150 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 PIRSF PIRSF000726 1 60 1.3E-22 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 Gene3D G3DSA:3.40.1160.10 1 265 3.7E-92 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_3247 0384e02a03770ad032f9ee901be4220a 408 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 SUPERFAMILY SSF55021 249 326 7.42E-18 T 11-10-2018 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 Pfam PF13840 ACT domain 339 400 2.2E-15 T 11-10-2018 IPR027795 CASTOR, ACT domain dqs_3247 0384e02a03770ad032f9ee901be4220a 408 PRINTS PR00474 Glutamate 5-kinase family signature 105 126 1.8E-5 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 1.8E-5 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 1.8E-5 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 Pfam PF00696 Amino acid kinase family 3 229 2.4E-51 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 Gene3D G3DSA:3.30.70.260 336 407 2.0E-26 T 11-10-2018 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 SUPERFAMILY SSF53633 4 242 2.09E-75 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_3247 0384e02a03770ad032f9ee901be4220a 408 SUPERFAMILY SSF55021 331 405 9.82E-26 T 11-10-2018 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 403 1.6E-118 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 Pfam PF01842 ACT domain 268 324 1.5E-8 T 11-10-2018 IPR002912 ACT domain dqs_3247 0384e02a03770ad032f9ee901be4220a 408 Gene3D G3DSA:3.30.70.260 266 335 1.5E-28 T 11-10-2018 dqs_3247 0384e02a03770ad032f9ee901be4220a 408 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 403 1.2E-132 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 SUPERFAMILY SSF51735 3 250 4.33E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 196 7.2E-4 T 11-10-2018 dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.9E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 3.9E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.9E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.9E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.9E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.9E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 Gene3D G3DSA:3.40.50.720 1 255 1.1E-76 T 11-10-2018 dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1459 47192105d8693fce5420eeb40f25cf9f 255 Pfam PF00106 short chain dehydrogenase 7 202 3.3E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_4035 1115d53a52d84f6ebb6fdf29b23dbaab 434 Gene3D G3DSA:1.25.40.590 53 207 2.2E-54 T 11-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily dqs_4035 1115d53a52d84f6ebb6fdf29b23dbaab 434 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 55 262 4.3E-70 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU dqs_4035 1115d53a52d84f6ebb6fdf29b23dbaab 434 Pfam PF00691 OmpA family 325 422 9.4E-14 T 11-10-2018 IPR006665 OmpA-like domain dqs_4035 1115d53a52d84f6ebb6fdf29b23dbaab 434 SUPERFAMILY SSF103088 313 430 8.76E-26 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_4035 1115d53a52d84f6ebb6fdf29b23dbaab 434 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 293 428 1.7E-48 T 11-10-2018 IPR017733 Type VI secretion system peptidoglycan-associated domain dqs_4035 1115d53a52d84f6ebb6fdf29b23dbaab 434 Pfam PF09850 Type VI secretion system protein DotU 56 256 3.8E-69 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU dqs_4035 1115d53a52d84f6ebb6fdf29b23dbaab 434 Gene3D G3DSA:3.30.1330.60 282 432 5.0E-45 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 Gene3D G3DSA:3.40.50.720 1 251 1.4E-77 T 11-10-2018 dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 250 1.5E-61 T 11-10-2018 dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 4.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 4.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 4.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 SUPERFAMILY SSF51735 8 251 5.67E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 195 0.009 T 11-10-2018 dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2109 675a073804ba3700b2fb3eab247e0e61 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 3.0E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3184 bd82008bc556f9308dad527a4b193773 393 Pfam PF13458 Periplasmic binding protein 33 370 1.8E-71 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_3184 bd82008bc556f9308dad527a4b193773 393 Gene3D G3DSA:3.40.50.2300 35 362 5.4E-110 T 11-10-2018 dqs_3184 bd82008bc556f9308dad527a4b193773 393 Gene3D G3DSA:3.40.50.2300 151 368 5.4E-110 T 11-10-2018 dqs_3184 bd82008bc556f9308dad527a4b193773 393 SUPERFAMILY SSF53822 34 386 6.06E-88 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_1108 66285d169b875043453ef34a788050c7 811 SMART SM00091 36 102 4.0E-4 T 11-10-2018 IPR000014 PAS domain dqs_1108 66285d169b875043453ef34a788050c7 811 SMART SM00091 258 324 3.3E-9 T 11-10-2018 IPR000014 PAS domain dqs_1108 66285d169b875043453ef34a788050c7 811 SMART SM00091 155 221 1.2E-4 T 11-10-2018 IPR000014 PAS domain dqs_1108 66285d169b875043453ef34a788050c7 811 SMART SM00086 330 372 4.0E-6 T 11-10-2018 IPR001610 PAC motif dqs_1108 66285d169b875043453ef34a788050c7 811 SUPERFAMILY SSF55073 388 545 6.36E-38 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1108 66285d169b875043453ef34a788050c7 811 SMART SM00267 372 544 9.3E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_1108 66285d169b875043453ef34a788050c7 811 Gene3D G3DSA:3.30.450.20 159 220 5.7E-6 T 11-10-2018 dqs_1108 66285d169b875043453ef34a788050c7 811 Pfam PF00990 Diguanylate cyclase, GGDEF domain 383 539 1.0E-38 T 11-10-2018 IPR000160 GGDEF domain dqs_1108 66285d169b875043453ef34a788050c7 811 SUPERFAMILY SSF55785 38 125 7.82E-6 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1108 66285d169b875043453ef34a788050c7 811 Gene3D G3DSA:3.30.450.20 37 118 7.4E-6 T 11-10-2018 dqs_1108 66285d169b875043453ef34a788050c7 811 Gene3D G3DSA:3.30.450.20 261 381 1.3E-38 T 11-10-2018 dqs_1108 66285d169b875043453ef34a788050c7 811 Gene3D G3DSA:3.20.20.450 555 808 4.3E-75 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1108 66285d169b875043453ef34a788050c7 811 Pfam PF00563 EAL domain 560 794 1.2E-60 T 11-10-2018 IPR001633 EAL domain dqs_1108 66285d169b875043453ef34a788050c7 811 SUPERFAMILY SSF141868 560 805 1.18E-65 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1108 66285d169b875043453ef34a788050c7 811 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 381 540 1.3E-29 T 11-10-2018 IPR000160 GGDEF domain dqs_1108 66285d169b875043453ef34a788050c7 811 SUPERFAMILY SSF55785 160 208 3.77E-7 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1108 66285d169b875043453ef34a788050c7 811 Pfam PF13188 PAS domain 40 96 1.1E-4 T 11-10-2018 IPR000014 PAS domain dqs_1108 66285d169b875043453ef34a788050c7 811 Pfam PF13188 PAS domain 162 201 7.4E-6 T 11-10-2018 IPR000014 PAS domain dqs_1108 66285d169b875043453ef34a788050c7 811 SMART SM00052 553 799 2.8E-68 T 11-10-2018 IPR001633 EAL domain dqs_1108 66285d169b875043453ef34a788050c7 811 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 264 378 1.7E-20 T 11-10-2018 IPR000014 PAS domain dqs_1108 66285d169b875043453ef34a788050c7 811 SUPERFAMILY SSF55785 263 370 7.54E-30 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1108 66285d169b875043453ef34a788050c7 811 Pfam PF13426 PAS domain 270 371 3.8E-17 T 11-10-2018 IPR000014 PAS domain dqs_1108 66285d169b875043453ef34a788050c7 811 Gene3D G3DSA:3.30.70.270 382 546 1.7E-44 T 11-10-2018 dqs_1085 2321af754a532393bb06d6fd69767413 365 Pfam PF14907 Uncharacterised nucleotidyltransferase 29 281 1.2E-51 T 11-10-2018 IPR039498 Uncharacterised nucleotidyltransferase dqs_1301 231720e0498be29a10cdee275381729f 304 Gene3D G3DSA:3.60.15.10 1 304 3.8E-88 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1301 231720e0498be29a10cdee275381729f 304 Pfam PF12706 Beta-lactamase superfamily domain 50 271 2.2E-46 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_1301 231720e0498be29a10cdee275381729f 304 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 304 172.67 T 11-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B dqs_1301 231720e0498be29a10cdee275381729f 304 SUPERFAMILY SSF56281 2 304 3.63E-59 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1301 231720e0498be29a10cdee275381729f 304 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 304 7.9E-124 T 11-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B dqs_1937 fe9fe3bdb947d24a77302d0020f47cd8 377 Gene3D G3DSA:3.40.50.2000 189 369 3.1E-29 T 11-10-2018 dqs_1937 fe9fe3bdb947d24a77302d0020f47cd8 377 SUPERFAMILY SSF53756 6 369 1.14E-59 T 11-10-2018 dqs_1937 fe9fe3bdb947d24a77302d0020f47cd8 377 Pfam PF00534 Glycosyl transferases group 1 188 331 3.3E-22 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_1937 fe9fe3bdb947d24a77302d0020f47cd8 377 Gene3D G3DSA:3.40.50.2000 1 188 1.7E-18 T 11-10-2018 dqs_1937 fe9fe3bdb947d24a77302d0020f47cd8 377 Pfam PF13439 Glycosyltransferase Family 4 15 176 5.9E-19 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3438 e70c66e33b60f2c2f762568ce5e7c6fe 66 Pfam PF11174 Protein of unknown function (DUF2970) 10 65 1.1E-22 T 11-10-2018 IPR021344 Protein of unknown function DUF2970 dqs_3471 06002296394428d00c3ae09c7effb14e 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_3471 06002296394428d00c3ae09c7effb14e 386 SUPERFAMILY SSF52210 242 384 5.76E-53 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_3471 06002296394428d00c3ae09c7effb14e 386 Pfam PF08442 ATP-grasp domain 2 202 6.4E-79 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_3471 06002296394428d00c3ae09c7effb14e 386 Gene3D G3DSA:3.30.1490.20 21 104 6.3E-93 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_3471 06002296394428d00c3ae09c7effb14e 386 Gene3D G3DSA:3.30.470.20 1 234 6.3E-93 T 11-10-2018 dqs_3471 06002296394428d00c3ae09c7effb14e 386 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 42.665 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_3471 06002296394428d00c3ae09c7effb14e 386 PIRSF PIRSF001554 1 386 7.6E-148 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_3471 06002296394428d00c3ae09c7effb14e 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 5.9E-157 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_3471 06002296394428d00c3ae09c7effb14e 386 Gene3D G3DSA:3.40.50.261 240 386 1.8E-56 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_3471 06002296394428d00c3ae09c7effb14e 386 SUPERFAMILY SSF56059 1 238 2.95E-83 T 11-10-2018 dqs_3471 06002296394428d00c3ae09c7effb14e 386 Pfam PF00549 CoA-ligase 262 381 4.6E-27 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 dqs_0647 350eeb6e8af6452a16461345516c20ce 296 Gene3D G3DSA:1.10.10.10 4 93 2.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0647 350eeb6e8af6452a16461345516c20ce 296 Pfam PF03466 LysR substrate binding domain 90 292 1.3E-25 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0647 350eeb6e8af6452a16461345516c20ce 296 Gene3D G3DSA:3.40.190.290 94 293 1.5E-43 T 11-10-2018 dqs_0647 350eeb6e8af6452a16461345516c20ce 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0647 350eeb6e8af6452a16461345516c20ce 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0647 350eeb6e8af6452a16461345516c20ce 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0647 350eeb6e8af6452a16461345516c20ce 296 SUPERFAMILY SSF46785 4 113 1.08E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0647 350eeb6e8af6452a16461345516c20ce 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 7.3E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0647 350eeb6e8af6452a16461345516c20ce 296 SUPERFAMILY SSF53850 90 295 1.23E-28 T 11-10-2018 dqs_2505 ed6db29f1efac250bdc720ed15555a34 300 Gene3D G3DSA:3.30.200.20 8 99 2.3E-13 T 11-10-2018 dqs_2505 ed6db29f1efac250bdc720ed15555a34 300 Gene3D G3DSA:3.90.1200.10 105 297 1.3E-63 T 11-10-2018 dqs_2505 ed6db29f1efac250bdc720ed15555a34 300 PIRSF PIRSF006221 7 297 1.8E-81 T 11-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 dqs_2505 ed6db29f1efac250bdc720ed15555a34 300 Pfam PF03881 Fructosamine kinase 17 294 7.4E-94 T 11-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 dqs_2505 ed6db29f1efac250bdc720ed15555a34 300 SUPERFAMILY SSF56112 28 294 4.81E-39 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_2710 d3a57cdb92051d4bc927d79aaf6aaba2 435 Pfam PF00437 Type II/IV secretion system protein 45 280 4.4E-38 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2710 d3a57cdb92051d4bc927d79aaf6aaba2 435 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 203 217 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2710 d3a57cdb92051d4bc927d79aaf6aaba2 435 Gene3D G3DSA:3.30.450.90 3 110 2.0E-29 T 11-10-2018 dqs_2710 d3a57cdb92051d4bc927d79aaf6aaba2 435 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 13 353 3.1E-138 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 dqs_2710 d3a57cdb92051d4bc927d79aaf6aaba2 435 Gene3D G3DSA:3.40.50.300 111 366 1.2E-89 T 11-10-2018 dqs_2710 d3a57cdb92051d4bc927d79aaf6aaba2 435 SUPERFAMILY SSF52540 11 347 2.93E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2010 29803ad7786a532272ada14c65c51aae 347 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 347 199.225 T 11-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2010 29803ad7786a532272ada14c65c51aae 347 Gene3D G3DSA:3.20.20.70 5 273 5.7E-80 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2010 29803ad7786a532272ada14c65c51aae 347 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 278 339 4.0E-27 T 11-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2010 29803ad7786a532272ada14c65c51aae 347 SUPERFAMILY SSF51569 8 279 8.24E-67 T 11-10-2018 dqs_2010 29803ad7786a532272ada14c65c51aae 347 SUPERFAMILY SSF89000 293 342 3.92E-18 T 11-10-2018 dqs_2010 29803ad7786a532272ada14c65c51aae 347 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 9 342 1.8E-165 T 11-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2010 29803ad7786a532272ada14c65c51aae 347 Pfam PF07836 DmpG-like communication domain 279 339 2.9E-31 T 11-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 dqs_2010 29803ad7786a532272ada14c65c51aae 347 Gene3D G3DSA:1.10.8.60 280 347 1.2E-30 T 11-10-2018 dqs_2010 29803ad7786a532272ada14c65c51aae 347 Pfam PF00682 HMGL-like 11 269 7.2E-61 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 301 316 3.6E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 316 332 3.6E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 286 328 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 SMART SM00342 249 332 2.4E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 Gene3D G3DSA:1.10.10.60 233 338 4.5E-25 T 11-10-2018 dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 Gene3D G3DSA:3.40.50.880 9 218 5.2E-41 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 SUPERFAMILY SSF46689 285 336 1.12E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 Pfam PF12833 Helix-turn-helix domain 257 334 3.5E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3850 d08f8ad50554a0d24ff3ccba9df40b4d 354 SUPERFAMILY SSF52317 12 214 3.27E-31 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 PRINTS PR00599 Methionine aminopeptidase-1 signature 96 112 3.1E-17 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 PRINTS PR00599 Methionine aminopeptidase-1 signature 74 87 3.1E-17 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 PRINTS PR00599 Methionine aminopeptidase-1 signature 199 211 3.1E-17 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 PRINTS PR00599 Methionine aminopeptidase-1 signature 168 180 3.1E-17 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 256 4.1E-97 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 Pfam PF00557 Metallopeptidase family M24 12 248 9.9E-55 T 11-10-2018 IPR000994 Peptidase M24 dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 Gene3D G3DSA:3.90.230.10 1 261 4.6E-111 T 11-10-2018 dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 SUPERFAMILY SSF55920 4 259 1.06E-90 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 Hamap MF_01974 Methionine aminopeptidase [map]. 3 257 41.763 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_2065 f5cae8aaa64b6d25faa56646addb18aa 272 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 174 192 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 dqs_2712 526f3a3ed87352055be06ea801eaf27a 514 Gene3D G3DSA:1.20.1600.10 23 468 7.5E-45 T 11-10-2018 dqs_2712 526f3a3ed87352055be06ea801eaf27a 514 SUPERFAMILY SSF56954 4 467 3.79E-54 T 11-10-2018 dqs_2712 526f3a3ed87352055be06ea801eaf27a 514 Pfam PF02321 Outer membrane efflux protein 59 259 1.9E-17 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_2712 526f3a3ed87352055be06ea801eaf27a 514 Pfam PF02321 Outer membrane efflux protein 290 466 1.9E-12 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0135 5103ab4b68646ab982dc2d74464e1fe7 85 Pfam PF04994 TfoX C-terminal domain 1 62 5.2E-21 T 11-10-2018 IPR007077 TfoX, C-terminal dqs_0135 5103ab4b68646ab982dc2d74464e1fe7 85 Gene3D G3DSA:1.10.150.20 1 69 4.3E-15 T 11-10-2018 dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 SUPERFAMILY SSF52821 160 282 2.75E-31 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 SMART SM00450 9 135 1.6E-21 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 SMART SM00450 157 277 1.1E-10 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 SUPERFAMILY SSF52821 3 155 7.99E-43 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 ProSitePatterns PS00683 Rhodanese C-terminal signature. 261 271 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 Pfam PF00581 Rhodanese-like domain 13 131 8.4E-19 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 Pfam PF00581 Rhodanese-like domain 159 273 2.3E-8 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 Gene3D G3DSA:3.40.250.10 161 283 1.0E-29 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 ProSitePatterns PS00380 Rhodanese signature 1. 42 53 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 dqs_2889 7e95f9332b85c15f3b0deeec88386c19 284 Gene3D G3DSA:3.40.250.10 2 153 2.0E-46 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_0788 9efc3a2cd6bbc27f3519cdfbf9951ac6 103 PIRSF PIRSF003135 3 101 4.9E-17 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 dqs_0788 9efc3a2cd6bbc27f3519cdfbf9951ac6 103 Gene3D G3DSA:2.40.50.140 5 103 1.9E-29 T 11-10-2018 dqs_0788 9efc3a2cd6bbc27f3519cdfbf9951ac6 103 Hamap MF_00720 Primosomal replication protein N [priB]. 5 100 22.708 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 dqs_0788 9efc3a2cd6bbc27f3519cdfbf9951ac6 103 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 6 99 4.1E-30 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 dqs_0788 9efc3a2cd6bbc27f3519cdfbf9951ac6 103 SUPERFAMILY SSF50249 5 102 1.41E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_0788 9efc3a2cd6bbc27f3519cdfbf9951ac6 103 Pfam PF00436 Single-strand binding protein family 6 85 8.8E-5 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 Gene3D G3DSA:3.30.43.10 1 93 4.9E-29 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 Gene3D G3DSA:3.30.70.2190 217 340 2.9E-36 T 11-10-2018 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 Gene3D G3DSA:3.30.465.10 95 216 7.8E-46 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 SUPERFAMILY SSF55103 190 467 2.13E-55 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 SUPERFAMILY SSF56176 1 217 1.99E-79 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 Gene3D G3DSA:3.30.70.2740 341 427 1.4E-31 T 11-10-2018 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 Pfam PF01565 FAD binding domain 40 177 2.9E-37 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 Gene3D G3DSA:1.10.45.10 428 468 3.5E-15 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 dqs_1129 ff8557ab2e1b6dea5d65d5cf57804fc2 468 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 467 4.6E-54 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 dqs_2131 113e54f35a8eacfb461105f2fa559c09 298 SUPERFAMILY SSF53474 14 285 2.89E-54 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2131 113e54f35a8eacfb461105f2fa559c09 298 Pfam PF00561 alpha/beta hydrolase fold 40 273 1.2E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2131 113e54f35a8eacfb461105f2fa559c09 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 4.7E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2131 113e54f35a8eacfb461105f2fa559c09 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 4.7E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2131 113e54f35a8eacfb461105f2fa559c09 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 4.7E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2131 113e54f35a8eacfb461105f2fa559c09 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 65 80 4.7E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2131 113e54f35a8eacfb461105f2fa559c09 298 Gene3D G3DSA:3.40.50.1820 6 289 1.2E-60 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2532 3d98058be2693f306e07916d4094340a 319 SUPERFAMILY SSF53850 32 262 1.48E-53 T 11-10-2018 dqs_2532 3d98058be2693f306e07916d4094340a 319 Gene3D G3DSA:3.40.190.10 114 213 7.1E-110 T 11-10-2018 dqs_2532 3d98058be2693f306e07916d4094340a 319 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 5 30 3.1E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_2532 3d98058be2693f306e07916d4094340a 319 Pfam PF09084 NMT1/THI5 like 59 254 2.0E-15 T 11-10-2018 IPR015168 SsuA/THI5-like dqs_2532 3d98058be2693f306e07916d4094340a 319 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 35 316 3.4E-73 T 11-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 dqs_2532 3d98058be2693f306e07916d4094340a 319 Gene3D G3DSA:3.40.190.10 35 310 7.1E-110 T 11-10-2018 dqs_2532 3d98058be2693f306e07916d4094340a 319 Gene3D G3DSA:1.10.8.450 245 277 7.1E-110 T 11-10-2018 dqs_2532 3d98058be2693f306e07916d4094340a 319 SMART SM00062 34 250 8.2E-26 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_3770 4389846d961ed1507f1237dea45f7c44 305 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 186 214 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 dqs_3770 4389846d961ed1507f1237dea45f7c44 305 Gene3D G3DSA:1.25.40.10 43 132 1.6E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_3770 4389846d961ed1507f1237dea45f7c44 305 SMART SM00671 74 109 3.3E-4 T 11-10-2018 IPR006597 Sel1-like repeat dqs_3770 4389846d961ed1507f1237dea45f7c44 305 SUPERFAMILY SSF81901 58 117 3.14E-7 T 11-10-2018 dqs_3770 4389846d961ed1507f1237dea45f7c44 305 SUPERFAMILY SSF53955 145 289 7.82E-45 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_3770 4389846d961ed1507f1237dea45f7c44 305 Pfam PF01464 Transglycosylase SLT domain 172 266 3.8E-28 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 dqs_3770 4389846d961ed1507f1237dea45f7c44 305 Gene3D G3DSA:1.10.530.10 136 291 9.4E-40 T 11-10-2018 dqs_3237 8047c9fe1e10dd8478d79567520d0467 215 SUPERFAMILY SSF160387 99 208 2.22E-25 T 11-10-2018 dqs_3237 8047c9fe1e10dd8478d79567520d0467 215 Gene3D G3DSA:3.30.70.2050 158 214 3.1E-8 T 11-10-2018 dqs_3237 8047c9fe1e10dd8478d79567520d0467 215 Pfam PF05573 NosL 79 204 3.6E-22 T 11-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL dqs_0203 c121b23c2d77f4912ab7d154c5507c21 241 Pfam PF00106 short chain dehydrogenase 3 190 2.9E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0203 c121b23c2d77f4912ab7d154c5507c21 241 SUPERFAMILY SSF51735 3 229 1.26E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0203 c121b23c2d77f4912ab7d154c5507c21 241 Gene3D G3DSA:3.40.50.720 2 236 2.7E-42 T 11-10-2018 dqs_0203 c121b23c2d77f4912ab7d154c5507c21 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 5.7E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0203 c121b23c2d77f4912ab7d154c5507c21 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 5.7E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0203 c121b23c2d77f4912ab7d154c5507c21 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 5.7E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0203 c121b23c2d77f4912ab7d154c5507c21 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 5.7E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0219 1a1ffe6e28b720b4985adaf5e2aedf00 414 PIRSF PIRSF005962 29 414 5.3E-122 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 dqs_0219 1a1ffe6e28b720b4985adaf5e2aedf00 414 SUPERFAMILY SSF53187 33 412 4.4E-82 T 11-10-2018 dqs_0219 1a1ffe6e28b720b4985adaf5e2aedf00 414 Gene3D G3DSA:3.30.70.360 208 322 3.3E-133 T 11-10-2018 dqs_0219 1a1ffe6e28b720b4985adaf5e2aedf00 414 Gene3D G3DSA:3.40.630.10 42 396 3.3E-133 T 11-10-2018 dqs_0219 1a1ffe6e28b720b4985adaf5e2aedf00 414 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 42 398 4.8E-105 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 dqs_0219 1a1ffe6e28b720b4985adaf5e2aedf00 414 Pfam PF01546 Peptidase family M20/M25/M40 101 408 3.4E-32 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 dqs_0219 1a1ffe6e28b720b4985adaf5e2aedf00 414 SUPERFAMILY SSF55031 210 323 7.98E-31 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain dqs_0219 1a1ffe6e28b720b4985adaf5e2aedf00 414 Pfam PF07687 Peptidase dimerisation domain 213 304 1.4E-11 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain dqs_3928 637e134ad3d4613daf78523b361e70f8 475 Gene3D G3DSA:3.30.70.270 314 475 3.4E-56 T 11-10-2018 dqs_3928 637e134ad3d4613daf78523b361e70f8 475 Pfam PF11563 Protoglobin 39 175 8.7E-11 T 11-10-2018 dqs_3928 637e134ad3d4613daf78523b361e70f8 475 SUPERFAMILY SSF55073 316 473 3.06E-49 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3928 637e134ad3d4613daf78523b361e70f8 475 SMART SM00267 300 472 6.6E-62 T 11-10-2018 IPR000160 GGDEF domain dqs_3928 637e134ad3d4613daf78523b361e70f8 475 Gene3D G3DSA:1.10.490.10 16 168 4.9E-48 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 dqs_3928 637e134ad3d4613daf78523b361e70f8 475 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 311 471 2.9E-52 T 11-10-2018 IPR000160 GGDEF domain dqs_3928 637e134ad3d4613daf78523b361e70f8 475 Pfam PF00990 Diguanylate cyclase, GGDEF domain 314 468 1.8E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_3928 637e134ad3d4613daf78523b361e70f8 475 SUPERFAMILY SSF46458 40 167 3.91E-15 T 11-10-2018 IPR009050 Globin-like superfamily dqs_0280 0c088a1c7fa426480ac36fa8dd015250 352 Gene3D G3DSA:2.40.50.100 54 193 1.0E-47 T 11-10-2018 dqs_0280 0c088a1c7fa426480ac36fa8dd015250 352 Gene3D G3DSA:2.40.420.20 28 333 1.0E-47 T 11-10-2018 dqs_0280 0c088a1c7fa426480ac36fa8dd015250 352 Gene3D G3DSA:2.40.30.170 40 267 1.0E-47 T 11-10-2018 dqs_0280 0c088a1c7fa426480ac36fa8dd015250 352 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 258 2.0E-19 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_0280 0c088a1c7fa426480ac36fa8dd015250 352 SUPERFAMILY SSF111369 57 268 1.83E-16 T 11-10-2018 dqs_0280 0c088a1c7fa426480ac36fa8dd015250 352 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 51 342 8.2E-33 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_0280 0c088a1c7fa426480ac36fa8dd015250 352 Gene3D G3DSA:1.10.287.470 88 156 1.0E-47 T 11-10-2018 dqs_3179 905d96a2f6be583cf9785cadd47330dd 256 SUPERFAMILY SSF53474 1 253 4.86E-43 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3179 905d96a2f6be583cf9785cadd47330dd 256 Gene3D G3DSA:3.40.50.1820 1 254 2.8E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3179 905d96a2f6be583cf9785cadd47330dd 256 Pfam PF12697 Alpha/beta hydrolase family 28 246 4.8E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2046 9b528041977371b14b6136c7d4bf4f13 264 Pfam PF08241 Methyltransferase domain 54 142 2.2E-19 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_2046 9b528041977371b14b6136c7d4bf4f13 264 Gene3D G3DSA:3.40.50.150 3 254 8.6E-32 T 11-10-2018 dqs_2046 9b528041977371b14b6136c7d4bf4f13 264 SUPERFAMILY SSF53335 11 256 8.36E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2046 9b528041977371b14b6136c7d4bf4f13 264 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 6 263 24.835 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 dqs_3590 b50dadba144224434defd127fab9b75b 669 Gene3D G3DSA:3.40.50.12780 350 483 8.8E-34 T 11-10-2018 dqs_3590 b50dadba144224434defd127fab9b75b 669 Gene3D G3DSA:3.40.50.12780 24 337 6.9E-50 T 11-10-2018 dqs_3590 b50dadba144224434defd127fab9b75b 669 ProSitePatterns PS00455 Putative AMP-binding domain signature. 207 218 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_3590 b50dadba144224434defd127fab9b75b 669 SUPERFAMILY SSF56801 26 626 1.57E-109 T 11-10-2018 dqs_3590 b50dadba144224434defd127fab9b75b 669 Pfam PF00501 AMP-binding enzyme 34 492 7.4E-89 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_0944 eac7a95be61f9ef13304e83fa12a2dda 344 SUPERFAMILY SSF51556 1 343 7.71E-144 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_0944 eac7a95be61f9ef13304e83fa12a2dda 344 Hamap MF_00219 Dihydroorotase [pyrC]. 2 344 47.925 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_0944 eac7a95be61f9ef13304e83fa12a2dda 344 PIRSF PIRSF001237 1 344 5.8E-140 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_0944 eac7a95be61f9ef13304e83fa12a2dda 344 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_0944 eac7a95be61f9ef13304e83fa12a2dda 344 ProSitePatterns PS00483 Dihydroorotase signature 2. 245 256 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_0944 eac7a95be61f9ef13304e83fa12a2dda 344 Pfam PF01979 Amidohydrolase family 11 309 5.8E-20 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 dqs_0944 eac7a95be61f9ef13304e83fa12a2dda 344 Gene3D G3DSA:3.20.20.140 2 344 5.5E-108 T 11-10-2018 dqs_0944 eac7a95be61f9ef13304e83fa12a2dda 344 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 343 1.5E-142 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_1737 11d72353a60f5ee17987633a605ff47b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 1.9E-24 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 dqs_1737 11d72353a60f5ee17987633a605ff47b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 104 117 1.9E-24 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 dqs_1737 11d72353a60f5ee17987633a605ff47b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 1.9E-24 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 dqs_1737 11d72353a60f5ee17987633a605ff47b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 1.9E-24 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 dqs_1737 11d72353a60f5ee17987633a605ff47b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 123 138 1.9E-24 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 dqs_1737 11d72353a60f5ee17987633a605ff47b 154 Gene3D G3DSA:3.40.50.2300 1 154 9.2E-55 T 11-10-2018 dqs_1737 11d72353a60f5ee17987633a605ff47b 154 SMART SM00226 2 151 5.5E-54 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I dqs_1737 11d72353a60f5ee17987633a605ff47b 154 SUPERFAMILY SSF52788 2 152 1.83E-50 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily dqs_1737 11d72353a60f5ee17987633a605ff47b 154 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 149 8.8E-39 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I dqs_2933 ae96ccff0bcb8b9b1f82895f5167e1d4 207 SMART SM00855 1 152 3.1E-15 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_2933 ae96ccff0bcb8b9b1f82895f5167e1d4 207 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 1 191 3.7E-63 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_2933 ae96ccff0bcb8b9b1f82895f5167e1d4 207 SUPERFAMILY SSF53254 1 198 4.32E-58 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_2933 ae96ccff0bcb8b9b1f82895f5167e1d4 207 Gene3D G3DSA:3.40.50.1240 1 204 8.0E-59 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_2933 ae96ccff0bcb8b9b1f82895f5167e1d4 207 PIRSF PIRSF000709 1 155 3.2E-12 T 11-10-2018 dqs_1141 e01779f6e40ac599459625c2b63bc35c 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_1141 e01779f6e40ac599459625c2b63bc35c 561 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 544 4.3E-21 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_1141 e01779f6e40ac599459625c2b63bc35c 561 Gene3D G3DSA:3.40.50.12780 13 457 7.4E-116 T 11-10-2018 dqs_1141 e01779f6e40ac599459625c2b63bc35c 561 SUPERFAMILY SSF56801 20 556 7.85E-155 T 11-10-2018 dqs_1141 e01779f6e40ac599459625c2b63bc35c 561 Pfam PF00501 AMP-binding enzyme 29 461 8.3E-108 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_1141 e01779f6e40ac599459625c2b63bc35c 561 Gene3D G3DSA:3.30.300.310 458 558 5.8E-33 T 11-10-2018 dqs_3556 4385e54135e50b8ffd8f191395d9aab8 212 SUPERFAMILY SSF50447 2 211 7.42E-79 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily dqs_3556 4385e54135e50b8ffd8f191395d9aab8 212 Gene3D G3DSA:2.40.50.620 33 97 9.3E-17 T 11-10-2018 dqs_3556 4385e54135e50b8ffd8f191395d9aab8 212 Pfam PF00297 Ribosomal protein L3 102 185 2.3E-15 T 11-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3556 4385e54135e50b8ffd8f191395d9aab8 212 Gene3D G3DSA:2.40.30.10 134 212 2.8E-13 T 11-10-2018 dqs_3556 4385e54135e50b8ffd8f191395d9aab8 212 ProSitePatterns PS00474 Ribosomal protein L3 signature. 104 127 - T 11-10-2018 IPR019926 Ribosomal protein L3, conserved site dqs_3556 4385e54135e50b8ffd8f191395d9aab8 212 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 207 1.3E-85 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3556 4385e54135e50b8ffd8f191395d9aab8 212 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 210 38.912 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 Gene3D G3DSA:1.10.10.350 374 467 4.6E-18 T 11-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 5 466 31.494 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 Gene3D G3DSA:3.40.50.620 4 321 2.1E-139 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 6 464 9.5E-172 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 312 3.5E-107 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 202 210 4.8E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 4.8E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 4.8E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 4.8E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 196 4.8E-26 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 SUPERFAMILY SSF48163 306 465 3.53E-40 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 dqs_1602 9e5fe7519fc4050a3486e980be0e62e1 467 SUPERFAMILY SSF52374 5 304 1.07E-112 T 11-10-2018 dqs_3634 17bcc4d41aa5992e154ff9816ceaf64e 167 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 3 158 3.2E-48 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 dqs_3634 17bcc4d41aa5992e154ff9816ceaf64e 167 Gene3D G3DSA:2.20.25.120 47 79 2.6E-57 T 11-10-2018 dqs_3634 17bcc4d41aa5992e154ff9816ceaf64e 167 Gene3D G3DSA:3.40.50.300 4 157 2.6E-57 T 11-10-2018 dqs_3634 17bcc4d41aa5992e154ff9816ceaf64e 167 SUPERFAMILY SSF52540 1 160 1.09E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3634 17bcc4d41aa5992e154ff9816ceaf64e 167 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 3 135 1.4E-49 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 Pfam PF01568 Molydopterin dinucleotide binding domain 733 841 6.9E-24 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 Gene3D G3DSA:3.40.228.10 176 721 0.0 T 11-10-2018 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 Gene3D G3DSA:3.40.50.740 97 642 0.0 T 11-10-2018 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 SMART SM00926 40 94 3.9E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 SUPERFAMILY SSF53706 38 724 2.36E-199 T 11-10-2018 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 Gene3D G3DSA:3.30.200.210 40 685 0.0 T 11-10-2018 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 45 62 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 31 2.2E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 SUPERFAMILY SSF50692 706 847 6.01E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 3 847 0.0 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 Pfam PF00384 Molybdopterin oxidoreductase 97 580 1.3E-90 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 41 93 2.3E-18 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 Gene3D G3DSA:2.40.40.20 724 847 7.9E-48 T 11-10-2018 dqs_4085 26fb6079eb497508876e4130b4cd82f7 847 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 847 32.48 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 dqs_1727 429cc416003c30be48ff0611a8245448 1126 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 276 1124 0.0 T 11-10-2018 IPR018667 Domain of unknown function DUF2126 dqs_1727 429cc416003c30be48ff0611a8245448 1126 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 6 84 1.7E-26 T 11-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal dqs_1727 429cc416003c30be48ff0611a8245448 1126 SUPERFAMILY SSF54001 8 337 8.59E-77 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_1727 429cc416003c30be48ff0611a8245448 1126 SMART SM00460 172 248 1.7E-22 T 11-10-2018 IPR002931 Transglutaminase-like dqs_1727 429cc416003c30be48ff0611a8245448 1126 Gene3D G3DSA:3.10.620.30 107 281 1.2E-29 T 11-10-2018 dqs_1727 429cc416003c30be48ff0611a8245448 1126 Pfam PF01841 Transglutaminase-like superfamily 134 246 5.3E-19 T 11-10-2018 IPR002931 Transglutaminase-like dqs_2040 61a1ca73d8bd2f70b0534bac45c37d57 435 Gene3D G3DSA:3.50.50.60 2 434 1.3E-27 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2040 61a1ca73d8bd2f70b0534bac45c37d57 435 SUPERFAMILY SSF51905 7 433 2.14E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2040 61a1ca73d8bd2f70b0534bac45c37d57 435 PRINTS PR00419 Adrenodoxin reductase family signature 30 43 5.1E-8 T 11-10-2018 dqs_2040 61a1ca73d8bd2f70b0534bac45c37d57 435 PRINTS PR00419 Adrenodoxin reductase family signature 7 29 5.1E-8 T 11-10-2018 dqs_2040 61a1ca73d8bd2f70b0534bac45c37d57 435 TIGRFAM TIGR03467 HpnE: squalene-associated FAD-dependent desaturase 8 430 2.0E-142 T 11-10-2018 IPR017830 Hydroxysqualene dehydroxylase HpnE MetaCyc: PWY-7072 dqs_2040 61a1ca73d8bd2f70b0534bac45c37d57 435 Pfam PF01593 Flavin containing amine oxidoreductase 16 430 6.8E-26 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 dqs_2042 29db8386e4738e7ba62bd5806a2360a3 261 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 259 35.922 T 11-10-2018 IPR005583 Peroxide stress protein YaaA dqs_2042 29db8386e4738e7ba62bd5806a2360a3 261 Pfam PF03883 Peroxide stress protein YaaA 1 247 1.8E-89 T 11-10-2018 IPR005583 Peroxide stress protein YaaA dqs_3356 44f863b57946a804e9e2eb1090019d85 305 Gene3D G3DSA:1.10.150.130 12 106 3.9E-16 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal dqs_3356 44f863b57946a804e9e2eb1090019d85 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 14 305 52.618 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD dqs_3356 44f863b57946a804e9e2eb1090019d85 305 Gene3D G3DSA:1.10.443.10 118 299 2.4E-68 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 dqs_3356 44f863b57946a804e9e2eb1090019d85 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 16 94 8.5E-13 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 dqs_3356 44f863b57946a804e9e2eb1090019d85 305 SUPERFAMILY SSF56349 115 303 2.09E-55 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 dqs_3356 44f863b57946a804e9e2eb1090019d85 305 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 18 304 6.6E-109 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 dqs_3356 44f863b57946a804e9e2eb1090019d85 305 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 12 305 57.227 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 dqs_3356 44f863b57946a804e9e2eb1090019d85 305 Pfam PF00589 Phage integrase family 119 290 6.8E-47 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 dqs_3356 44f863b57946a804e9e2eb1090019d85 305 SUPERFAMILY SSF47823 14 107 1.77E-25 T 11-10-2018 dqs_0578 c0df6c7225550481b2bef8f248959d2e 464 SUPERFAMILY SSF55874 328 452 1.44E-19 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0578 c0df6c7225550481b2bef8f248959d2e 464 SMART SM00387 361 454 1.5E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0578 c0df6c7225550481b2bef8f248959d2e 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 452 8.9E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0578 c0df6c7225550481b2bef8f248959d2e 464 Gene3D G3DSA:1.20.1440.210 57 183 1.3E-16 T 11-10-2018 dqs_0578 c0df6c7225550481b2bef8f248959d2e 464 Pfam PF05227 CHASE3 domain 58 178 1.7E-21 T 11-10-2018 IPR007891 CHASE3 dqs_0578 c0df6c7225550481b2bef8f248959d2e 464 Pfam PF07730 Histidine kinase 259 323 4.0E-11 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 dqs_0578 c0df6c7225550481b2bef8f248959d2e 464 Gene3D G3DSA:3.30.565.10 326 453 3.1E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 Pfam PF00676 Dehydrogenase E1 component 208 513 2.6E-48 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 8 47 3.4E-18 T 11-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 SUPERFAMILY SSF52518 118 523 8.41E-88 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 PIRSF PIRSF000157 1 940 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 12 937 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 Pfam PF02779 Transketolase, pyrimidine binding domain 593 791 1.6E-63 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 SMART SM00861 593 790 7.3E-59 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 SUPERFAMILY SSF52518 576 797 8.63E-51 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 Gene3D G3DSA:3.40.50.11610 727 935 3.4E-164 T 11-10-2018 dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 Gene3D G3DSA:3.40.50.12470 556 806 3.4E-164 T 11-10-2018 dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 795 938 1.6E-49 T 11-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 Gene3D G3DSA:3.40.50.970 165 519 2.5E-141 T 11-10-2018 dqs_1678 a826568d2e92bca710d88f47b1dc385b 943 Gene3D G3DSA:1.10.287.1150 82 164 2.3E-24 T 11-10-2018 dqs_1518 11c72409dee489ef7c880af8175dd4bf 120 PRINTS PR01651 Protein-export SecG membrane protein signature 58 80 1.2E-38 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 dqs_1518 11c72409dee489ef7c880af8175dd4bf 120 PRINTS PR01651 Protein-export SecG membrane protein signature 7 27 1.2E-38 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 dqs_1518 11c72409dee489ef7c880af8175dd4bf 120 PRINTS PR01651 Protein-export SecG membrane protein signature 42 58 1.2E-38 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 dqs_1518 11c72409dee489ef7c880af8175dd4bf 120 PRINTS PR01651 Protein-export SecG membrane protein signature 27 41 1.2E-38 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 dqs_1518 11c72409dee489ef7c880af8175dd4bf 120 Pfam PF03840 Preprotein translocase SecG subunit 8 77 6.0E-22 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 dqs_1518 11c72409dee489ef7c880af8175dd4bf 120 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 7 77 1.1E-26 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 dqs_3779 d41f1aa296ccb2bc7870f3e58b49025e 699 PIRSF PIRSF011409 8 699 1.4E-258 T 11-10-2018 IPR016582 D-(-)-3-hydroxybutyrate oligomer hydrolase, putative GO:0005615|GO:0019605|GO:0047989 KEGG: 00650+3.1.1.22 dqs_3779 d41f1aa296ccb2bc7870f3e58b49025e 699 Pfam PF10605 3HB-oligomer hydrolase (3HBOH) 20 699 0.0 T 11-10-2018 IPR016582 D-(-)-3-hydroxybutyrate oligomer hydrolase, putative GO:0005615|GO:0019605|GO:0047989 KEGG: 00650+3.1.1.22 dqs_3779 d41f1aa296ccb2bc7870f3e58b49025e 699 Hamap MF_01906 D-(-)-3-hydroxybutyrate oligomer hydrolase. 3 699 33.508 T 11-10-2018 IPR016582 D-(-)-3-hydroxybutyrate oligomer hydrolase, putative GO:0005615|GO:0019605|GO:0047989 KEGG: 00650+3.1.1.22 dqs_3779 d41f1aa296ccb2bc7870f3e58b49025e 699 SUPERFAMILY SSF53474 134 611 9.97E-5 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 SUPERFAMILY SSF46785 30 90 1.01E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 ProSitePatterns PS00519 AsnC-type HTH domain signature. 49 75 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 Pfam PF13412 Winged helix-turn-helix DNA-binding 31 78 1.6E-20 T 11-10-2018 dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 Gene3D G3DSA:1.10.10.10 23 82 2.6E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 SUPERFAMILY SSF54909 93 179 2.15E-18 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 SMART SM00344 31 140 3.6E-49 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 Pfam PF01037 Lrp/AsnC ligand binding domain 97 171 2.0E-18 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 Gene3D G3DSA:3.30.70.920 83 176 9.2E-23 T 11-10-2018 dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 47 2.2E-20 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 47 58 2.2E-20 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_4067 5247a6ccb0e73390992da9169a2ee6bc 182 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 58 77 2.2E-20 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_2893 944486daa4ee74ba2e3b3464f20b03f6 116 Gene3D G3DSA:2.60.300.12 10 116 7.6E-36 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 dqs_2893 944486daa4ee74ba2e3b3464f20b03f6 116 Pfam PF01521 Iron-sulphur cluster biosynthesis 12 111 2.5E-21 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 dqs_2893 944486daa4ee74ba2e3b3464f20b03f6 116 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 116 37.614 T 11-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 dqs_2893 944486daa4ee74ba2e3b3464f20b03f6 116 SUPERFAMILY SSF89360 10 105 1.39E-33 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 dqs_2893 944486daa4ee74ba2e3b3464f20b03f6 116 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 97 114 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 dqs_2893 944486daa4ee74ba2e3b3464f20b03f6 116 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 13 115 3.8E-40 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 dqs_2619 0503a36d067cd5aa118574be378de077 298 Gene3D G3DSA:1.10.10.10 1 88 1.4E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2619 0503a36d067cd5aa118574be378de077 298 Gene3D G3DSA:3.40.190.10 92 288 4.6E-50 T 11-10-2018 dqs_2619 0503a36d067cd5aa118574be378de077 298 SUPERFAMILY SSF46785 3 86 7.0E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2619 0503a36d067cd5aa118574be378de077 298 Pfam PF03466 LysR substrate binding domain 96 291 1.6E-21 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2619 0503a36d067cd5aa118574be378de077 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 4.1E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2619 0503a36d067cd5aa118574be378de077 298 SUPERFAMILY SSF53850 90 292 2.24E-37 T 11-10-2018 dqs_2619 0503a36d067cd5aa118574be378de077 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2619 0503a36d067cd5aa118574be378de077 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2619 0503a36d067cd5aa118574be378de077 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2619 0503a36d067cd5aa118574be378de077 298 Gene3D G3DSA:3.40.190.10 171 264 4.6E-50 T 11-10-2018 dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 5 527 49.085 T 11-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 Gene3D G3DSA:3.40.50.300 2 215 1.1E-75 T 11-10-2018 dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 Gene3D G3DSA:3.40.50.300 219 395 1.7E-47 T 11-10-2018 dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 SMART SM00487 24 227 6.9E-62 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 SUPERFAMILY SSF52540 79 365 4.24E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 Pfam PF00270 DEAD/DEAH box helicase 29 200 1.3E-50 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 SMART SM00490 263 344 4.2E-31 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_3665 70d4230dd0e8db464b6816b1f002358d 537 Pfam PF00271 Helicase conserved C-terminal domain 239 344 3.4E-26 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_1257 154ec195279c06357312a3225375cb6a 745 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 743 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 dqs_1257 154ec195279c06357312a3225375cb6a 745 PIRSF PIRSF009407 1 744 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 dqs_1257 154ec195279c06357312a3225375cb6a 745 Gene3D G3DSA:3.40.718.10 408 665 1.0E-6 T 11-10-2018 dqs_1257 154ec195279c06357312a3225375cb6a 745 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 dqs_1257 154ec195279c06357312a3225375cb6a 745 SUPERFAMILY SSF53659 5 743 0.0 T 11-10-2018 dqs_0850 928f9b5a56fb8c14392edea3a8b3a336 252 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 137 245 8.1E-32 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 dqs_0850 928f9b5a56fb8c14392edea3a8b3a336 252 SUPERFAMILY SSF55486 121 251 8.06E-40 T 11-10-2018 dqs_0850 928f9b5a56fb8c14392edea3a8b3a336 252 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 103 249 21.459 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 dqs_0850 928f9b5a56fb8c14392edea3a8b3a336 252 Pfam PF02130 Uncharacterized protein family UPF0054 119 244 9.0E-31 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 dqs_0850 928f9b5a56fb8c14392edea3a8b3a336 252 Gene3D G3DSA:3.40.390.30 100 252 5.1E-45 T 11-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 dqs_0430 fcf0050d2dce318314b67c8109b73779 137 Pfam PF02472 Biopolymer transport protein ExbD/TolR 4 131 1.0E-24 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 dqs_0430 fcf0050d2dce318314b67c8109b73779 137 Gene3D G3DSA:3.30.420.270 51 124 1.3E-8 T 11-10-2018 dqs_1567 6e9fb2aa43d81b44fc9900659ee80116 188 Gene3D G3DSA:3.90.79.10 36 182 3.0E-35 T 11-10-2018 dqs_1567 6e9fb2aa43d81b44fc9900659ee80116 188 Pfam PF00293 NUDIX domain 41 99 1.9E-8 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 dqs_1567 6e9fb2aa43d81b44fc9900659ee80116 188 SUPERFAMILY SSF55811 2 165 4.87E-36 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_1567 6e9fb2aa43d81b44fc9900659ee80116 188 Pfam PF14803 Nudix N-terminal 2 35 2.4E-16 T 11-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 dqs_1567 6e9fb2aa43d81b44fc9900659ee80116 188 Gene3D G3DSA:2.20.70.10 1 35 2.6E-17 T 11-10-2018 dqs_3685 fd1c9f228e762d8b9f28e43e2bfaba38 291 SUPERFAMILY SSF47616 117 259 3.06E-32 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_3685 fd1c9f228e762d8b9f28e43e2bfaba38 291 SUPERFAMILY SSF52833 37 130 7.31E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3685 fd1c9f228e762d8b9f28e43e2bfaba38 291 Gene3D G3DSA:3.40.30.10 19 255 6.8E-111 T 11-10-2018 dqs_3685 fd1c9f228e762d8b9f28e43e2bfaba38 291 Gene3D G3DSA:1.20.1050.10 133 249 6.8E-111 T 11-10-2018 dqs_3685 fd1c9f228e762d8b9f28e43e2bfaba38 291 Pfam PF13410 Glutathione S-transferase, C-terminal domain 182 244 1.7E-8 T 11-10-2018 dqs_3685 fd1c9f228e762d8b9f28e43e2bfaba38 291 Pfam PF02798 Glutathione S-transferase, N-terminal domain 45 127 1.3E-8 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_2481 77c2e4bf387e6954d812a09676d7a23f 165 Gene3D G3DSA:3.40.50.2300 5 138 4.4E-38 T 11-10-2018 dqs_2481 77c2e4bf387e6954d812a09676d7a23f 165 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 8 121 1.6E-16 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I dqs_2481 77c2e4bf387e6954d812a09676d7a23f 165 SUPERFAMILY SSF52788 6 143 3.27E-35 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily dqs_2481 77c2e4bf387e6954d812a09676d7a23f 165 SMART SM00226 6 143 1.4E-30 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I dqs_1632 83244e05c5bd383d5de7f7c84b77013b 418 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 418 3.7E-146 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 dqs_1632 83244e05c5bd383d5de7f7c84b77013b 418 Pfam PF02687 FtsX-like permease family 305 411 2.4E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_1632 83244e05c5bd383d5de7f7c84b77013b 418 Pfam PF12704 MacB-like periplasmic core domain 29 243 5.6E-21 T 11-10-2018 IPR025857 MacB-like periplasmic core domain dqs_3148 44961205f84bf1672069f4bfd0c76aa9 230 SUPERFAMILY SSF69336 5 199 1.57E-42 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 dqs_3148 44961205f84bf1672069f4bfd0c76aa9 230 Pfam PF01493 GXGXG motif 33 181 2.0E-14 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 dqs_3148 44961205f84bf1672069f4bfd0c76aa9 230 PIRSF PIRSF006519 1 230 1.5E-68 T 11-10-2018 IPR012061 Glutamate synthase, large subunit domain 3 stand-alone protein dqs_3148 44961205f84bf1672069f4bfd0c76aa9 230 Gene3D G3DSA:2.160.20.60 21 205 3.8E-14 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 dqs_0928 c4cb369846d488e3d1b80fa216d13e14 311 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 47 71 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 dqs_0928 c4cb369846d488e3d1b80fa216d13e14 311 SUPERFAMILY SSF53613 1 297 1.87E-65 T 11-10-2018 IPR029056 Ribokinase-like dqs_0928 c4cb369846d488e3d1b80fa216d13e14 311 Pfam PF00294 pfkB family carbohydrate kinase 39 294 1.1E-38 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB dqs_0928 c4cb369846d488e3d1b80fa216d13e14 311 Gene3D G3DSA:3.40.1190.20 1 310 9.1E-113 T 11-10-2018 IPR029056 Ribokinase-like dqs_0501 094097ed3d2945db1f3fc4fc058a5f56 206 SUPERFAMILY SSF52833 1 84 1.21E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0501 094097ed3d2945db1f3fc4fc058a5f56 206 Gene3D G3DSA:3.40.30.10 2 205 1.7E-87 T 11-10-2018 dqs_0501 094097ed3d2945db1f3fc4fc058a5f56 206 Gene3D G3DSA:1.20.1050.10 87 195 1.7E-87 T 11-10-2018 dqs_0501 094097ed3d2945db1f3fc4fc058a5f56 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 129 196 1.6E-12 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal dqs_0501 094097ed3d2945db1f3fc4fc058a5f56 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 83 5.4E-13 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_0501 094097ed3d2945db1f3fc4fc058a5f56 206 SUPERFAMILY SSF47616 77 203 1.08E-39 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_0763 a06a23a32fc0b49a7112f03092e3320d 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 236 5.6E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0763 a06a23a32fc0b49a7112f03092e3320d 243 SMART SM00448 11 121 8.5E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0763 a06a23a32fc0b49a7112f03092e3320d 243 SUPERFAMILY SSF52172 7 135 2.7E-37 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0763 a06a23a32fc0b49a7112f03092e3320d 243 Gene3D G3DSA:3.40.50.2300 1 138 1.8E-33 T 11-10-2018 dqs_0763 a06a23a32fc0b49a7112f03092e3320d 243 Pfam PF00072 Response regulator receiver domain 13 122 5.4E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0763 a06a23a32fc0b49a7112f03092e3320d 243 Gene3D G3DSA:1.10.10.10 139 241 1.7E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0763 a06a23a32fc0b49a7112f03092e3320d 243 SMART SM00862 163 236 1.5E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0763 a06a23a32fc0b49a7112f03092e3320d 243 SUPERFAMILY SSF46894 139 237 2.21E-23 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_3791 91d223452bc8ab59a08994ec895c65db 707 Pfam PF11741 AMIN domain 50 134 1.4E-8 T 11-10-2018 IPR021731 AMIN domain dqs_3791 91d223452bc8ab59a08994ec895c65db 707 Pfam PF03958 Bacterial type II/III secretion system short domain 382 446 2.0E-9 T 11-10-2018 IPR005644 NolW-like dqs_3791 91d223452bc8ab59a08994ec895c65db 707 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 283 701 3.0E-152 T 11-10-2018 IPR013355 Type IV pilus secretin PilQ dqs_3791 91d223452bc8ab59a08994ec895c65db 707 Pfam PF07660 Secretin and TonB N terminus short domain 308 354 4.8E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 dqs_3791 91d223452bc8ab59a08994ec895c65db 707 Pfam PF00263 Bacterial type II and III secretion system protein 544 700 3.0E-47 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 dqs_3791 91d223452bc8ab59a08994ec895c65db 707 Gene3D G3DSA:3.30.1370.120 355 447 3.0E-22 T 11-10-2018 IPR038591 NolW-like superfamily dqs_3791 91d223452bc8ab59a08994ec895c65db 707 PRINTS PR00811 Bacterial general secretion pathway protein D signature 575 585 2.4E-21 T 11-10-2018 IPR001775 GspD/PilQ family dqs_3791 91d223452bc8ab59a08994ec895c65db 707 PRINTS PR00811 Bacterial general secretion pathway protein D signature 688 702 2.4E-21 T 11-10-2018 IPR001775 GspD/PilQ family dqs_3791 91d223452bc8ab59a08994ec895c65db 707 PRINTS PR00811 Bacterial general secretion pathway protein D signature 446 456 2.4E-21 T 11-10-2018 IPR001775 GspD/PilQ family dqs_3791 91d223452bc8ab59a08994ec895c65db 707 PRINTS PR00811 Bacterial general secretion pathway protein D signature 540 564 2.4E-21 T 11-10-2018 IPR001775 GspD/PilQ family dqs_3791 91d223452bc8ab59a08994ec895c65db 707 PRINTS PR00811 Bacterial general secretion pathway protein D signature 665 683 2.4E-21 T 11-10-2018 IPR001775 GspD/PilQ family dqs_3791 91d223452bc8ab59a08994ec895c65db 707 Gene3D G3DSA:3.55.50.30 283 354 8.0E-12 T 11-10-2018 dqs_3791 91d223452bc8ab59a08994ec895c65db 707 Gene3D G3DSA:2.60.40.3470 140 269 2.0E-40 T 11-10-2018 dqs_3791 91d223452bc8ab59a08994ec895c65db 707 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 646 679 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 dqs_3791 91d223452bc8ab59a08994ec895c65db 707 SMART SM00965 308 356 5.4E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 dqs_3791 91d223452bc8ab59a08994ec895c65db 707 Gene3D G3DSA:2.60.40.3500 23 136 1.1E-7 T 11-10-2018 dqs_0912 d209fddc8bec31ddc286d6c2bfcb3317 284 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 14 278 2.5E-88 T 11-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 dqs_0912 d209fddc8bec31ddc286d6c2bfcb3317 284 Gene3D G3DSA:3.40.1190.20 1 283 2.0E-96 T 11-10-2018 IPR029056 Ribokinase-like dqs_0912 d209fddc8bec31ddc286d6c2bfcb3317 284 SUPERFAMILY SSF53613 11 282 3.43E-73 T 11-10-2018 IPR029056 Ribokinase-like dqs_0912 d209fddc8bec31ddc286d6c2bfcb3317 284 Pfam PF08543 Phosphomethylpyrimidine kinase 21 276 1.4E-84 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 dqs_3648 03591031e063de9e67334e2fbed15c9d 101 Gene3D G3DSA:2.10.150.10 1 101 2.8E-48 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3648 03591031e063de9e67334e2fbed15c9d 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 99 4.2E-45 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3648 03591031e063de9e67334e2fbed15c9d 101 SUPERFAMILY SSF51278 1 101 3.66E-48 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3648 03591031e063de9e67334e2fbed15c9d 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.275 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_3648 03591031e063de9e67334e2fbed15c9d 101 Pfam PF00699 Urease beta subunit 3 99 1.5E-46 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 dqs_0400 46d58a605105297f3b1ff10f14584314 609 SUPERFAMILY SSF53474 239 535 1.38E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0400 46d58a605105297f3b1ff10f14584314 609 Pfam PF00561 alpha/beta hydrolase fold 282 525 5.1E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_0400 46d58a605105297f3b1ff10f14584314 609 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 68 598 3.3E-241 T 11-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 dqs_0400 46d58a605105297f3b1ff10f14584314 609 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 109 281 1.1E-76 T 11-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 dqs_0182 39aa143e9b15f4c58a724e1c21305580 95 SUPERFAMILY SSF141000 3 93 3.66E-27 T 11-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 dqs_0182 39aa143e9b15f4c58a724e1c21305580 95 Gene3D G3DSA:1.10.20.60 1 93 9.1E-23 T 11-10-2018 dqs_0182 39aa143e9b15f4c58a724e1c21305580 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 1.0E-28 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 dqs_0182 39aa143e9b15f4c58a724e1c21305580 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 21.489 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 dqs_0182 39aa143e9b15f4c58a724e1c21305580 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 5.6E-17 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 dqs_4092 b657a75bed2d943492973e030d935289 254 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 157 171 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 dqs_4092 b657a75bed2d943492973e030d935289 254 SUPERFAMILY SSF53335 32 239 2.92E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_4092 b657a75bed2d943492973e030d935289 254 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 22 251 27.626 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 dqs_4092 b657a75bed2d943492973e030d935289 254 Gene3D G3DSA:3.40.50.150 38 251 8.0E-42 T 11-10-2018 dqs_4092 b657a75bed2d943492973e030d935289 254 Pfam PF01209 ubiE/COQ5 methyltransferase family 31 250 3.4E-28 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 dqs_0713 88501fbf197c2d6450b391c885f471d1 164 Gene3D G3DSA:1.10.10.10 12 94 1.7E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0713 88501fbf197c2d6450b391c885f471d1 164 Gene3D G3DSA:3.30.1490.190 101 155 3.5E-8 T 11-10-2018 dqs_0713 88501fbf197c2d6450b391c885f471d1 164 Pfam PF01475 Ferric uptake regulator family 30 123 3.7E-14 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 dqs_0713 88501fbf197c2d6450b391c885f471d1 164 SUPERFAMILY SSF46785 23 150 6.26E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0055 75d5bb41f2d3d4a867b4adccb5d32c67 264 SMART SM00796 3 208 5.1E-83 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D dqs_0055 75d5bb41f2d3d4a867b4adccb5d32c67 264 Gene3D G3DSA:3.30.1360.40 4 86 1.5E-18 T 11-10-2018 dqs_0055 75d5bb41f2d3d4a867b4adccb5d32c67 264 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 4 208 4.9E-70 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D dqs_0055 75d5bb41f2d3d4a867b4adccb5d32c67 264 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 216 1.0E-50 T 11-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 dqs_0055 75d5bb41f2d3d4a867b4adccb5d32c67 264 SUPERFAMILY SSF160467 4 99 3.92E-17 T 11-10-2018 dqs_0055 75d5bb41f2d3d4a867b4adccb5d32c67 264 SUPERFAMILY SSF50891 94 224 9.48E-44 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily dqs_0055 75d5bb41f2d3d4a867b4adccb5d32c67 264 Gene3D G3DSA:2.40.100.10 94 231 5.3E-54 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily dqs_2179 667efd941d3bad5a720d1a5c1c1f9b9e 251 SUPERFAMILY SSF53335 5 227 6.68E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2179 667efd941d3bad5a720d1a5c1c1f9b9e 251 Gene3D G3DSA:3.40.50.150 6 231 1.3E-48 T 11-10-2018 dqs_2179 667efd941d3bad5a720d1a5c1c1f9b9e 251 Pfam PF01564 Spermine/spermidine synthase domain 42 162 3.2E-11 T 11-10-2018 dqs_0784 f328cc22061d1082a45cb4441b51d558 234 Pfam PF13489 Methyltransferase domain 68 206 1.1E-22 T 11-10-2018 dqs_0784 f328cc22061d1082a45cb4441b51d558 234 Gene3D G3DSA:3.40.50.150 53 212 3.0E-11 T 11-10-2018 dqs_0784 f328cc22061d1082a45cb4441b51d558 234 SUPERFAMILY SSF53335 75 207 4.22E-17 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3804 58fd785fd10a77ad3e025147128c743d 270 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 2 268 35.419 T 11-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_3804 58fd785fd10a77ad3e025147128c743d 270 SMART SM00934 17 255 1.4E-51 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3804 58fd785fd10a77ad3e025147128c743d 270 SUPERFAMILY SSF51366 2 260 3.99E-79 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 dqs_3804 58fd785fd10a77ad3e025147128c743d 270 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 3 255 8.1E-73 T 11-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 dqs_3804 58fd785fd10a77ad3e025147128c743d 270 Gene3D G3DSA:3.20.20.70 1 269 4.7E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3804 58fd785fd10a77ad3e025147128c743d 270 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 90 103 - T 11-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3804 58fd785fd10a77ad3e025147128c743d 270 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 17 249 6.7E-31 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 PIRSF PIRSF000904 1 333 1.6E-122 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 192 6.8E-63 T 11-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 PIRSF PIRSF500210 1 333 2.6E-123 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 Gene3D G3DSA:3.40.190.80 195 332 4.0E-53 T 11-10-2018 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 Gene3D G3DSA:3.30.540.10 1 193 7.7E-71 T 11-10-2018 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 SUPERFAMILY SSF56655 3 330 6.91E-114 T 11-10-2018 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 147 170 1.2E-69 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 204 231 1.2E-69 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 65 91 1.2E-69 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 178 201 1.2E-69 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 306 331 1.2E-69 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 28 55 1.2E-69 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_1042 34a825917b0dd667f2ed30ab2bf67a1c 333 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 332 45.77 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 dqs_0972 9d567f1d8b076142d5f6a95271637092 458 Pfam PF00206 Lyase 17 315 6.6E-63 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal dqs_0972 9d567f1d8b076142d5f6a95271637092 458 Gene3D G3DSA:1.10.40.30 385 448 3.6E-148 T 11-10-2018 dqs_0972 9d567f1d8b076142d5f6a95271637092 458 Gene3D G3DSA:1.10.275.10 1 120 1.0E-40 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal dqs_0972 9d567f1d8b076142d5f6a95271637092 458 Pfam PF08328 Adenylosuccinate lyase C-terminal 334 448 1.9E-47 T 11-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 dqs_0972 9d567f1d8b076142d5f6a95271637092 458 PRINTS PR00149 Fumarate lyase superfamily signature 166 184 2.7E-20 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0972 9d567f1d8b076142d5f6a95271637092 458 PRINTS PR00149 Fumarate lyase superfamily signature 297 313 2.7E-20 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0972 9d567f1d8b076142d5f6a95271637092 458 PRINTS PR00149 Fumarate lyase superfamily signature 120 138 2.7E-20 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0972 9d567f1d8b076142d5f6a95271637092 458 PRINTS PR00149 Fumarate lyase superfamily signature 254 281 2.7E-20 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0972 9d567f1d8b076142d5f6a95271637092 458 ProSitePatterns PS00163 Fumarate lyases signature. 297 306 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 dqs_0972 9d567f1d8b076142d5f6a95271637092 458 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 15 455 2.5E-118 T 11-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 dqs_0972 9d567f1d8b076142d5f6a95271637092 458 SUPERFAMILY SSF48557 13 457 2.2E-103 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 dqs_0972 9d567f1d8b076142d5f6a95271637092 458 Gene3D G3DSA:1.20.200.10 121 449 3.6E-148 T 11-10-2018 dqs_1904 08a09951cd6c4f912c1f0417c792847e 139 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 104 9.8E-12 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 dqs_1904 08a09951cd6c4f912c1f0417c792847e 139 PIRSF PIRSF004638 1 139 3.8E-16 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 dqs_2559 8d4f99accfae2f2b867f5144db12257a 510 Pfam PF05683 Fumarase C-terminus 292 493 4.8E-81 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 dqs_2559 8d4f99accfae2f2b867f5144db12257a 510 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 330 491 4.1E-47 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 dqs_2559 8d4f99accfae2f2b867f5144db12257a 510 Pfam PF05681 Fumarate hydratase (Fumerase) 11 288 2.0E-104 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 dqs_2559 8d4f99accfae2f2b867f5144db12257a 510 Gene3D G3DSA:3.20.130.10 308 493 3.2E-58 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 dqs_2559 8d4f99accfae2f2b867f5144db12257a 510 SUPERFAMILY SSF117457 321 491 2.09E-61 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 dqs_2559 8d4f99accfae2f2b867f5144db12257a 510 PIRSF PIRSF001394 1 510 8.6E-220 T 11-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 dqs_2559 8d4f99accfae2f2b867f5144db12257a 510 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 286 5.3E-66 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 dqs_1478 29647851586c280d0f51a89cab1831cd 69 PRINTS PR00946 Mercury scavenger protein signature 27 42 3.3E-8 T 11-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 dqs_1478 29647851586c280d0f51a89cab1831cd 69 PRINTS PR00946 Mercury scavenger protein signature 42 56 3.3E-8 T 11-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 dqs_1478 29647851586c280d0f51a89cab1831cd 69 PRINTS PR00946 Mercury scavenger protein signature 56 69 3.3E-8 T 11-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 dqs_1478 29647851586c280d0f51a89cab1831cd 69 PRINTS PR00946 Mercury scavenger protein signature 11 27 3.3E-8 T 11-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 dqs_1478 29647851586c280d0f51a89cab1831cd 69 Pfam PF00403 Heavy-metal-associated domain 5 66 8.5E-18 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 dqs_1478 29647851586c280d0f51a89cab1831cd 69 Gene3D G3DSA:3.30.70.100 1 67 8.1E-24 T 11-10-2018 dqs_1478 29647851586c280d0f51a89cab1831cd 69 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 dqs_1478 29647851586c280d0f51a89cab1831cd 69 SUPERFAMILY SSF55008 1 66 1.22E-20 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 dqs_0306 f4cad6ec939f9c13a96fff5d7c4bdf97 313 SUPERFAMILY SSF52218 2 158 3.75E-9 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_0306 f4cad6ec939f9c13a96fff5d7c4bdf97 313 Gene3D G3DSA:3.40.50.360 1 154 3.1E-16 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_1052 b9f4b1a6b945812d659e0aa142e264b7 572 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 183 208 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site dqs_1052 b9f4b1a6b945812d659e0aa142e264b7 572 Pfam PF00474 Sodium:solute symporter family 68 489 5.6E-114 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 dqs_1052 b9f4b1a6b945812d659e0aa142e264b7 572 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 68 489 9.7E-59 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 dqs_1052 b9f4b1a6b945812d659e0aa142e264b7 572 Gene3D G3DSA:1.20.1730.10 56 549 6.9E-57 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily dqs_0232 0d9dd963900194fc1b881ba7faea0d5b 535 Gene3D G3DSA:3.40.190.10 91 291 1.7E-90 T 11-10-2018 dqs_0232 0d9dd963900194fc1b881ba7faea0d5b 535 Gene3D G3DSA:3.10.105.10 292 488 1.7E-90 T 11-10-2018 dqs_0232 0d9dd963900194fc1b881ba7faea0d5b 535 PIRSF PIRSF002741 22 534 4.4E-68 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 dqs_0232 0d9dd963900194fc1b881ba7faea0d5b 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 107 453 6.1E-64 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain dqs_0232 0d9dd963900194fc1b881ba7faea0d5b 535 SUPERFAMILY SSF53850 54 526 7.06E-109 T 11-10-2018 dqs_0464 5619b5c561a20fde4483ed5fb884f55c 603 Gene3D G3DSA:3.40.50.300 354 603 6.3E-94 T 11-10-2018 dqs_0464 5619b5c561a20fde4483ed5fb884f55c 603 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0464 5619b5c561a20fde4483ed5fb884f55c 603 Pfam PF00005 ABC transporter 375 522 3.1E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0464 5619b5c561a20fde4483ed5fb884f55c 603 Gene3D G3DSA:1.20.1560.10 28 345 9.1E-117 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_0464 5619b5c561a20fde4483ed5fb884f55c 603 Pfam PF00664 ABC transporter transmembrane region 36 308 2.1E-40 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_0464 5619b5c561a20fde4483ed5fb884f55c 603 SUPERFAMILY SSF52540 346 592 8.13E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0464 5619b5c561a20fde4483ed5fb884f55c 603 SMART SM00382 382 568 6.2E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0464 5619b5c561a20fde4483ed5fb884f55c 603 SUPERFAMILY SSF90123 25 335 6.93E-64 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_2683 ec7e75e58b6e1e3f0950b52e5c785214 295 Pfam PF12833 Helix-turn-helix domain 213 292 5.4E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2683 ec7e75e58b6e1e3f0950b52e5c785214 295 SUPERFAMILY SSF51182 32 139 3.2E-8 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2683 ec7e75e58b6e1e3f0950b52e5c785214 295 SMART SM00342 207 290 9.3E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2683 ec7e75e58b6e1e3f0950b52e5c785214 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 6.8E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_2683 ec7e75e58b6e1e3f0950b52e5c785214 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 6.8E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_2683 ec7e75e58b6e1e3f0950b52e5c785214 295 Gene3D G3DSA:1.10.10.60 187 294 3.6E-22 T 11-10-2018 dqs_2683 ec7e75e58b6e1e3f0950b52e5c785214 295 SUPERFAMILY SSF46689 246 292 1.03E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2683 ec7e75e58b6e1e3f0950b52e5c785214 295 Gene3D G3DSA:2.60.120.10 9 99 7.6E-6 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3482 5140c2afe2e1c4dfac936d1dbe30fada 251 Pfam PF00977 Histidine biosynthesis protein 3 232 3.8E-79 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 dqs_3482 5140c2afe2e1c4dfac936d1dbe30fada 251 SUPERFAMILY SSF51366 1 238 6.04E-75 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 dqs_3482 5140c2afe2e1c4dfac936d1dbe30fada 251 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 240 36.205 T 11-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 dqs_3482 5140c2afe2e1c4dfac936d1dbe30fada 251 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 236 1.2E-77 T 11-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 dqs_3482 5140c2afe2e1c4dfac936d1dbe30fada 251 Gene3D G3DSA:3.20.20.70 1 242 6.0E-87 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 PRINTS PR00095 Anthranilate synthase component I signature 413 427 1.8E-21 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 PRINTS PR00095 Anthranilate synthase component I signature 333 346 1.8E-21 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 PRINTS PR00095 Anthranilate synthase component I signature 319 332 1.8E-21 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 PRINTS PR00095 Anthranilate synthase component I signature 428 442 1.8E-21 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 Pfam PF04715 Anthranilate synthase component I, N terminal region 26 169 3.1E-31 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 SUPERFAMILY SSF56322 14 482 7.46E-161 T 11-10-2018 IPR005801 ADC synthase GO:0009058 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 Gene3D G3DSA:3.60.120.10 2 487 6.8E-181 T 11-10-2018 IPR005801 ADC synthase GO:0009058 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 479 1.6E-170 T 11-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 dqs_3463 c2165eb10b6b5cd5c66fa3638ad061a5 490 Pfam PF00425 chorismate binding enzyme 218 471 2.8E-100 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal dqs_2875 9d94230c36114c993b72ce112505c35a 133 PIRSF PIRSF002889 1 133 6.6E-45 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 dqs_2875 9d94230c36114c993b72ce112505c35a 133 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site dqs_2875 9d94230c36114c993b72ce112505c35a 133 Pfam PF00460 Flagella basal body rod protein 9 39 1.2E-8 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 dqs_2875 9d94230c36114c993b72ce112505c35a 133 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 130 1.6E-35 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 dqs_3479 d9a1d9da6c5563b053beea7740a7ecae 107 SUPERFAMILY SSF101386 6 95 2.43E-25 T 11-10-2018 dqs_3479 d9a1d9da6c5563b053beea7740a7ecae 107 Gene3D G3DSA:1.10.287.1080 3 96 4.3E-30 T 11-10-2018 dqs_3479 d9a1d9da6c5563b053beea7740a7ecae 107 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 8 93 4.6E-17 T 11-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 dqs_3479 d9a1d9da6c5563b053beea7740a7ecae 107 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 7 89 2.1E-31 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 dqs_3479 d9a1d9da6c5563b053beea7740a7ecae 107 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 4 90 20.129 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 PIRSF PIRSF000089 1 315 1.0E-91 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 SUPERFAMILY SSF52467 188 309 3.54E-47 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 191 273 1.0E-34 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 Gene3D G3DSA:3.40.50.620 3 183 1.6E-29 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 SMART SM00893 3 183 1.8E-17 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 SUPERFAMILY SSF52402 2 183 2.26E-30 T 11-10-2018 dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 Gene3D G3DSA:3.40.50.1220 186 312 3.0E-55 T 11-10-2018 dqs_3142 bfb15f47b16a93846d54bc3182bfb53b 315 Pfam PF01012 Electron transfer flavoprotein domain 4 171 2.1E-22 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_0996 feee3351a05d6cbfd822088fdc98f849 375 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 5 365 2.8E-136 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 dqs_0996 feee3351a05d6cbfd822088fdc98f849 375 Pfam PF04055 Radical SAM superfamily 108 288 1.1E-17 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_0996 feee3351a05d6cbfd822088fdc98f849 375 Gene3D G3DSA:1.10.150.530 4 65 5.1E-25 T 11-10-2018 dqs_0996 feee3351a05d6cbfd822088fdc98f849 375 SUPERFAMILY SSF102114 104 321 1.7E-13 T 11-10-2018 dqs_0996 feee3351a05d6cbfd822088fdc98f849 375 PIRSF PIRSF006004 3 374 1.2E-154 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 dqs_0996 feee3351a05d6cbfd822088fdc98f849 375 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 4 360 75.384 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 dqs_0996 feee3351a05d6cbfd822088fdc98f849 375 Gene3D G3DSA:3.20.20.70 67 345 3.2E-108 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3455 f455ccb320b64bbc1ecc38cba7e58af2 327 Gene3D G3DSA:3.40.50.720 126 293 3.8E-124 T 11-10-2018 dqs_3455 f455ccb320b64bbc1ecc38cba7e58af2 327 Gene3D G3DSA:3.90.180.10 17 323 3.8E-124 T 11-10-2018 dqs_3455 f455ccb320b64bbc1ecc38cba7e58af2 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 1.0E-5 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 dqs_3455 f455ccb320b64bbc1ecc38cba7e58af2 327 SUPERFAMILY SSF50129 2 146 1.48E-46 T 11-10-2018 IPR011032 GroES-like superfamily dqs_3455 f455ccb320b64bbc1ecc38cba7e58af2 327 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 3 325 8.2E-139 T 11-10-2018 IPR014188 Acrylyl-CoA reductase AcuI dqs_3455 f455ccb320b64bbc1ecc38cba7e58af2 327 Pfam PF00107 Zinc-binding dehydrogenase 159 275 1.0E-14 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 dqs_3455 f455ccb320b64bbc1ecc38cba7e58af2 327 SUPERFAMILY SSF51735 118 292 4.82E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3455 f455ccb320b64bbc1ecc38cba7e58af2 327 SMART SM00829 13 323 5.4E-6 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 dqs_3337 9db93e8b473dcb3ae7a655635ec2ab96 188 Pfam PF00692 dUTPase 82 182 1.3E-6 T 11-10-2018 IPR029054 dUTPase-like dqs_3337 9db93e8b473dcb3ae7a655635ec2ab96 188 Gene3D G3DSA:2.70.40.10 1 160 7.9E-52 T 11-10-2018 IPR036157 dUTPase-like superfamily dqs_3337 9db93e8b473dcb3ae7a655635ec2ab96 188 Hamap MF_00146 dCTP deaminase [dcd]. 1 188 27.879 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 dqs_3337 9db93e8b473dcb3ae7a655635ec2ab96 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 188 9.7E-48 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 dqs_3337 9db93e8b473dcb3ae7a655635ec2ab96 188 SUPERFAMILY SSF51283 3 188 1.44E-51 T 11-10-2018 IPR036157 dUTPase-like superfamily dqs_3698 1429f16b2ee98bbb64be5b37a199b723 623 Gene3D G3DSA:2.40.170.20 157 621 3.3E-112 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_3698 1429f16b2ee98bbb64be5b37a199b723 623 SUPERFAMILY SSF56935 32 620 1.31E-121 T 11-10-2018 dqs_3698 1429f16b2ee98bbb64be5b37a199b723 623 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 151 1.7E-31 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_3698 1429f16b2ee98bbb64be5b37a199b723 623 Gene3D G3DSA:2.170.130.10 31 156 4.9E-39 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_3698 1429f16b2ee98bbb64be5b37a199b723 623 Pfam PF00593 TonB dependent receptor 203 620 1.0E-42 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_3485 c41573b1f73c7408c46b3985eeff1b3c 362 Gene3D G3DSA:3.90.1150.10 20 344 5.6E-109 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3485 c41573b1f73c7408c46b3985eeff1b3c 362 SUPERFAMILY SSF53383 5 355 5.71E-78 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_3485 c41573b1f73c7408c46b3985eeff1b3c 362 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 354 8.9E-92 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 dqs_3485 c41573b1f73c7408c46b3985eeff1b3c 362 Gene3D G3DSA:3.40.640.10 38 263 5.6E-109 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_3485 c41573b1f73c7408c46b3985eeff1b3c 362 Pfam PF00155 Aminotransferase class I and II 25 349 3.5E-61 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_3485 c41573b1f73c7408c46b3985eeff1b3c 362 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 211 220 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 dqs_3485 c41573b1f73c7408c46b3985eeff1b3c 362 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 355 56.351 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 dqs_0747 552ee6f17b49b0f18b4b1a3e3ac57279 230 Pfam PF00005 ABC transporter 17 159 1.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0747 552ee6f17b49b0f18b4b1a3e3ac57279 230 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 230 5.9E-105 T 11-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE dqs_0747 552ee6f17b49b0f18b4b1a3e3ac57279 230 SUPERFAMILY SSF52540 2 218 2.02E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0747 552ee6f17b49b0f18b4b1a3e3ac57279 230 SMART SM00382 26 209 4.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0747 552ee6f17b49b0f18b4b1a3e3ac57279 230 Gene3D G3DSA:3.40.50.300 1 226 3.5E-58 T 11-10-2018 dqs_2927 3fdb40d291c803016826f84e8ab04631 197 SMART SM00852 8 154 2.3E-23 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_2927 3fdb40d291c803016826f84e8ab04631 197 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 70 83 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 dqs_2927 3fdb40d291c803016826f84e8ab04631 197 Pfam PF00994 Probable molybdopterin binding domain 9 147 1.3E-28 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_2927 3fdb40d291c803016826f84e8ab04631 197 Gene3D G3DSA:3.40.980.10 3 195 8.7E-59 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily dqs_2927 3fdb40d291c803016826f84e8ab04631 197 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 5 147 3.2E-37 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_2927 3fdb40d291c803016826f84e8ab04631 197 SUPERFAMILY SSF53218 4 189 2.49E-47 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily dqs_1169 d718a9533032c2c2c00129ce599df251 384 SUPERFAMILY SSF53822 40 383 1.88E-80 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_1169 d718a9533032c2c2c00129ce599df251 384 Gene3D G3DSA:3.40.50.2300 159 377 5.8E-117 T 11-10-2018 dqs_1169 d718a9533032c2c2c00129ce599df251 384 Pfam PF13458 Periplasmic binding protein 40 378 2.7E-73 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_1169 d718a9533032c2c2c00129ce599df251 384 Gene3D G3DSA:3.40.50.2300 40 373 5.8E-117 T 11-10-2018 dqs_1169 d718a9533032c2c2c00129ce599df251 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 268 286 6.7E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1169 d718a9533032c2c2c00129ce599df251 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 81 99 6.7E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1169 d718a9533032c2c2c00129ce599df251 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 62 78 6.7E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1169 d718a9533032c2c2c00129ce599df251 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 40 56 6.7E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1032 ac3470b61cc358d6a49ef00dc77c6f7e 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 103 3.3E-31 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family dqs_1032 ac3470b61cc358d6a49ef00dc77c6f7e 107 SUPERFAMILY SSF82607 10 101 1.7E-33 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily dqs_1032 ac3470b61cc358d6a49ef00dc77c6f7e 107 PIRSF PIRSF004555 2 107 9.7E-36 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family dqs_1032 ac3470b61cc358d6a49ef00dc77c6f7e 107 Gene3D G3DSA:3.30.1310.10 1 107 1.8E-41 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily dqs_1032 ac3470b61cc358d6a49ef00dc77c6f7e 107 Pfam PF02575 YbaB/EbfC DNA-binding family 10 98 1.3E-31 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family dqs_1032 ac3470b61cc358d6a49ef00dc77c6f7e 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 4 96 22.556 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family dqs_2123 3a5cb79d95afedbe23f48c332e0fcaf4 284 SUPERFAMILY SSF53474 4 273 6.91E-69 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2123 3a5cb79d95afedbe23f48c332e0fcaf4 284 Pfam PF00561 alpha/beta hydrolase fold 29 259 4.1E-25 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2123 3a5cb79d95afedbe23f48c332e0fcaf4 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 7.5E-26 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2123 3a5cb79d95afedbe23f48c332e0fcaf4 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 7.5E-26 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2123 3a5cb79d95afedbe23f48c332e0fcaf4 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 7.5E-26 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2123 3a5cb79d95afedbe23f48c332e0fcaf4 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 218 232 7.5E-26 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2123 3a5cb79d95afedbe23f48c332e0fcaf4 284 Gene3D G3DSA:3.40.50.1820 4 280 3.3E-104 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0210 5a3cb8fdb561453a9a6cd14f7fa4a0af 346 Pfam PF08279 HTH domain 6 60 1.7E-5 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 dqs_0210 5a3cb8fdb561453a9a6cd14f7fa4a0af 346 Gene3D G3DSA:1.10.10.10 1 69 5.5E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0210 5a3cb8fdb561453a9a6cd14f7fa4a0af 346 Pfam PF13280 WYL domain 151 325 3.5E-40 T 11-10-2018 IPR026881 WYL domain dqs_3070 600fe75ea1e944fd0217654ac81d2904 615 SMART SM00790 3 206 1.3E-122 T 11-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 dqs_3070 600fe75ea1e944fd0217654ac81d2904 615 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 6 205 2.0E-79 T 11-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 dqs_3070 600fe75ea1e944fd0217654ac81d2904 615 SUPERFAMILY SSF48310 212 615 5.23E-129 T 11-10-2018 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 dqs_3070 600fe75ea1e944fd0217654ac81d2904 615 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 222 615 5.3E-130 T 11-10-2018 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 dqs_3070 600fe75ea1e944fd0217654ac81d2904 615 Gene3D G3DSA:1.10.569.10 242 443 1.6E-128 T 11-10-2018 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 dqs_3070 600fe75ea1e944fd0217654ac81d2904 615 Gene3D G3DSA:3.60.9.10 1 209 1.1E-86 T 11-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily dqs_3070 600fe75ea1e944fd0217654ac81d2904 615 SUPERFAMILY SSF56228 1 208 3.14E-74 T 11-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily dqs_3070 600fe75ea1e944fd0217654ac81d2904 615 Gene3D G3DSA:1.10.599.10 240 615 1.6E-128 T 11-10-2018 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 dqs_1939 aacbe280012e192126e844817e43691c 488 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 456 463 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_1939 aacbe280012e192126e844817e43691c 488 Gene3D G3DSA:1.10.10.60 418 476 2.6E-19 T 11-10-2018 dqs_1939 aacbe280012e192126e844817e43691c 488 PIRSF PIRSF000774 1 477 4.7E-147 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_1939 aacbe280012e192126e844817e43691c 488 Gene3D G3DSA:1.10.10.1330 119 248 4.4E-20 T 11-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily dqs_1939 aacbe280012e192126e844817e43691c 488 Pfam PF04963 Sigma-54 factor, core binding domain 113 306 1.3E-55 T 11-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 dqs_1939 aacbe280012e192126e844817e43691c 488 Pfam PF04552 Sigma-54, DNA binding domain 322 475 5.9E-60 T 11-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding dqs_1939 aacbe280012e192126e844817e43691c 488 PRINTS PR00045 Sigma-54 factor signature 189 206 2.8E-27 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_1939 aacbe280012e192126e844817e43691c 488 PRINTS PR00045 Sigma-54 factor signature 377 389 2.8E-27 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_1939 aacbe280012e192126e844817e43691c 488 PRINTS PR00045 Sigma-54 factor signature 393 404 2.8E-27 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_1939 aacbe280012e192126e844817e43691c 488 PRINTS PR00045 Sigma-54 factor signature 451 469 2.8E-27 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_1939 aacbe280012e192126e844817e43691c 488 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 474 3.4E-132 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_1939 aacbe280012e192126e844817e43691c 488 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 49 2.2E-15 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_3633 38eac8f68aea4d3a640d39cc81f9f658 306 Pfam PF12727 PBP superfamily domain 97 277 7.2E-42 T 11-10-2018 IPR024370 PBP domain dqs_3633 38eac8f68aea4d3a640d39cc81f9f658 306 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 21 64 2.8E-9 T 11-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 dqs_3633 38eac8f68aea4d3a640d39cc81f9f658 306 Pfam PF12728 Helix-turn-helix domain 18 66 8.1E-12 T 11-10-2018 dqs_3293 024f84e53acf4cdb77937bfed172200a 224 PIRSF PIRSF026326 1 224 1.1E-97 T 11-10-2018 IPR027023 Putative lipopolysaccharide kinase InaA dqs_3293 024f84e53acf4cdb77937bfed172200a 224 SUPERFAMILY SSF56112 20 183 2.76E-11 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_3293 024f84e53acf4cdb77937bfed172200a 224 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 21 215 2.2E-37 T 11-10-2018 dqs_3114 fc9a7814d11db6aeee803f30a89bab0b 489 Pfam PF07730 Histidine kinase 258 322 2.8E-12 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 dqs_3114 fc9a7814d11db6aeee803f30a89bab0b 489 Gene3D G3DSA:1.10.287.130 181 317 1.2E-5 T 11-10-2018 dqs_3114 fc9a7814d11db6aeee803f30a89bab0b 489 SUPERFAMILY SSF55874 332 455 3.42E-15 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3114 fc9a7814d11db6aeee803f30a89bab0b 489 Gene3D G3DSA:3.30.565.10 325 455 8.8E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3114 fc9a7814d11db6aeee803f30a89bab0b 489 SMART SM00387 364 457 1.9E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3114 fc9a7814d11db6aeee803f30a89bab0b 489 SMART SM00304 184 236 4.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1721 9ec1e311fb846bf797db87774dabaeb7 256 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 dqs_1721 9ec1e311fb846bf797db87774dabaeb7 256 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 252 4.2E-86 T 11-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 dqs_1721 9ec1e311fb846bf797db87774dabaeb7 256 PIRSF PIRSF005902 1 255 1.3E-77 T 11-10-2018 IPR001130 TatD family GO:0016788 dqs_1721 9ec1e311fb846bf797db87774dabaeb7 256 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 188 204 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 dqs_1721 9ec1e311fb846bf797db87774dabaeb7 256 Gene3D G3DSA:3.20.20.140 1 255 1.4E-91 T 11-10-2018 dqs_1721 9ec1e311fb846bf797db87774dabaeb7 256 SUPERFAMILY SSF51556 2 252 5.78E-88 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_1721 9ec1e311fb846bf797db87774dabaeb7 256 Pfam PF01026 TatD related DNase 3 252 2.1E-78 T 11-10-2018 IPR001130 TatD family GO:0016788 dqs_1175 023e5a8084db161cee509567374671cf 365 SUPERFAMILY SSF53383 1 360 5.63E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1175 023e5a8084db161cee509567374671cf 365 PIRSF PIRSF000525 1 365 1.0E-149 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 dqs_1175 023e5a8084db161cee509567374671cf 365 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 364 49.988 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 dqs_1175 023e5a8084db161cee509567374671cf 365 Pfam PF00266 Aminotransferase class-V 4 353 5.7E-50 T 11-10-2018 IPR000192 Aminotransferase class V domain dqs_1175 023e5a8084db161cee509567374671cf 365 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 364 3.1E-152 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 dqs_1175 023e5a8084db161cee509567374671cf 365 Gene3D G3DSA:3.40.640.10 17 261 3.0E-91 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_1175 023e5a8084db161cee509567374671cf 365 Gene3D G3DSA:3.90.1150.10 262 365 1.6E-38 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_1175 023e5a8084db161cee509567374671cf 365 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 192 211 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site dqs_0474 dfff4c93c23f803b8ffec9c2e1ad9615 823 SUPERFAMILY SSF47203 364 510 7.57E-23 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_0474 dfff4c93c23f803b8ffec9c2e1ad9615 823 Pfam PF09317 Domain of unknown function (DUF1974) 517 803 1.3E-112 T 11-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 dqs_0474 dfff4c93c23f803b8ffec9c2e1ad9615 823 SUPERFAMILY SSF56645 126 358 6.15E-41 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_0474 dfff4c93c23f803b8ffec9c2e1ad9615 823 Gene3D G3DSA:1.20.140.10 363 510 9.6E-92 T 11-10-2018 dqs_0474 dfff4c93c23f803b8ffec9c2e1ad9615 823 Gene3D G3DSA:1.10.540.10 127 238 9.6E-92 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_0474 dfff4c93c23f803b8ffec9c2e1ad9615 823 Gene3D G3DSA:2.40.110.10 239 362 9.6E-92 T 11-10-2018 dqs_0474 dfff4c93c23f803b8ffec9c2e1ad9615 823 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 363 510 3.0E-13 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_0474 dfff4c93c23f803b8ffec9c2e1ad9615 823 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 142 235 4.3E-17 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 113 129 - T 11-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 SMART SM00859 3 107 2.1E-18 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 2 307 1.7E-118 T 11-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 Gene3D G3DSA:3.30.360.10 122 293 7.0E-46 T 11-10-2018 dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 43 103 1.8E-5 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 307 51.162 T 11-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 SUPERFAMILY SSF55347 118 288 4.91E-34 T 11-10-2018 dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 SUPERFAMILY SSF51735 1 136 3.73E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_4060 7646128cc775e5d1eee394736c80b3fe 307 Gene3D G3DSA:3.40.50.720 43 306 7.0E-46 T 11-10-2018 dqs_2535 904c319bf0ffca03e5e67aeaadc18d0c 341 Gene3D G3DSA:3.40.190.10 25 133 1.1E-17 T 11-10-2018 dqs_2535 904c319bf0ffca03e5e67aeaadc18d0c 341 Gene3D G3DSA:3.40.190.10 134 309 5.1E-32 T 11-10-2018 dqs_2535 904c319bf0ffca03e5e67aeaadc18d0c 341 SUPERFAMILY SSF53850 27 249 3.34E-47 T 11-10-2018 dqs_2535 904c319bf0ffca03e5e67aeaadc18d0c 341 SMART SM00062 27 259 7.7E-7 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_2535 904c319bf0ffca03e5e67aeaadc18d0c 341 Pfam PF13379 NMT1-like family 25 253 2.6E-30 T 11-10-2018 dqs_1418 0220f9ce5d1b39a81ad0c214e16821f8 232 Pfam PF09850 Type VI secretion system protein DotU 21 220 2.9E-52 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU dqs_1418 0220f9ce5d1b39a81ad0c214e16821f8 232 Gene3D G3DSA:1.25.40.590 17 187 1.7E-43 T 11-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily dqs_1418 0220f9ce5d1b39a81ad0c214e16821f8 232 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 21 226 3.3E-53 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU dqs_1284 6eb47717701117270d927ab2c814ed52 130 SUPERFAMILY SSF116960 8 122 9.81E-28 T 11-10-2018 dqs_1284 6eb47717701117270d927ab2c814ed52 130 Pfam PF03887 YfbU domain 8 122 1.3E-22 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU dqs_1284 6eb47717701117270d927ab2c814ed52 130 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 122 2.0E-13 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU dqs_1284 6eb47717701117270d927ab2c814ed52 130 Gene3D G3DSA:1.10.3190.10 12 122 2.7E-28 T 11-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily dqs_3420 f477a5535a71c2e3821ac41ef9c0a65d 313 SUPERFAMILY SSF52540 118 295 1.57E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3420 f477a5535a71c2e3821ac41ef9c0a65d 313 TIGRFAM TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEP-CTERM locus tyrosine autokinase 79 287 6.3E-86 T 11-10-2018 dqs_3420 f477a5535a71c2e3821ac41ef9c0a65d 313 Gene3D G3DSA:3.40.50.300 36 310 2.9E-57 T 11-10-2018 dqs_3420 f477a5535a71c2e3821ac41ef9c0a65d 313 Pfam PF13614 AAA domain 118 279 1.7E-11 T 11-10-2018 IPR025669 AAA domain dqs_3688 43f940342907fee86ea2fa93448e728f 218 Pfam PF01810 LysE type translocator 16 213 8.8E-42 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 dqs_3688 43f940342907fee86ea2fa93448e728f 218 PIRSF PIRSF006324 3 217 2.8E-50 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 dqs_3079 38d57060a630bb7b3a923e3605833cf0 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 dqs_3079 38d57060a630bb7b3a923e3605833cf0 506 SUPERFAMILY SSF53720 14 498 1.57E-159 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_3079 38d57060a630bb7b3a923e3605833cf0 506 Gene3D G3DSA:3.40.309.10 266 464 1.7E-162 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_3079 38d57060a630bb7b3a923e3605833cf0 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_3079 38d57060a630bb7b3a923e3605833cf0 506 Gene3D G3DSA:3.40.605.10 23 492 1.7E-162 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_3079 38d57060a630bb7b3a923e3605833cf0 506 Pfam PF00171 Aldehyde dehydrogenase family 27 493 1.5E-164 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_2366 1a8b74f5b5540851c077912bbb79b5e5 252 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 60 227 7.5E-53 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 dqs_2366 1a8b74f5b5540851c077912bbb79b5e5 252 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 57 229 3.5E-34 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 Gene3D G3DSA:2.40.50.530 1 65 2.2E-22 T 11-10-2018 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 Pfam PF01632 Ribosomal protein L35 2 62 7.6E-26 T 11-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 SUPERFAMILY SSF143034 2 64 1.57E-24 T 11-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 3.0E-27 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.708 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 11-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 3.8E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 3.8E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 dqs_1190 034f4342974b4e7bdb3d2ea57ed3e08d 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 3.8E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 dqs_0173 3f627711eceef9863589b8d736873bd8 236 SMART SM00862 150 225 1.0E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0173 3f627711eceef9863589b8d736873bd8 236 SUPERFAMILY SSF46894 124 226 6.24E-31 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_0173 3f627711eceef9863589b8d736873bd8 236 SUPERFAMILY SSF52172 2 127 8.11E-46 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0173 3f627711eceef9863589b8d736873bd8 236 SMART SM00448 3 116 3.5E-46 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0173 3f627711eceef9863589b8d736873bd8 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 3.4E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0173 3f627711eceef9863589b8d736873bd8 236 Pfam PF00072 Response regulator receiver domain 5 117 2.1E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0173 3f627711eceef9863589b8d736873bd8 236 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 2 226 2.4E-111 T 11-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 dqs_0173 3f627711eceef9863589b8d736873bd8 236 Gene3D G3DSA:3.40.50.2300 1 128 1.7E-42 T 11-10-2018 dqs_0173 3f627711eceef9863589b8d736873bd8 236 Gene3D G3DSA:1.10.10.10 129 228 1.5E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0013 1f9501d3392919fa97c7865af9d94bba 607 Pfam PF06527 TniQ 19 122 2.1E-8 T 11-10-2018 IPR009492 TniQ dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 7.4E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 7.4E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 7.4E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 7.4E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 7.4E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 256 1.2E-77 T 11-10-2018 dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 SUPERFAMILY SSF51735 8 258 8.2E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 Gene3D G3DSA:3.40.50.720 3 259 1.6E-58 T 11-10-2018 dqs_2262 381f013357293cd94e6e41dd7dd8b371 259 PIRSF PIRSF000094 4 259 2.0E-84 T 11-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 dqs_1927 b6d2d3f91b36e2aa7e93e699595c39e5 286 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 34 194 1.3E-28 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_1927 b6d2d3f91b36e2aa7e93e699595c39e5 286 SMART SM00644 23 193 7.2E-16 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_1927 b6d2d3f91b36e2aa7e93e699595c39e5 286 Gene3D G3DSA:2.30.30.40 222 278 1.2E-8 T 11-10-2018 dqs_1927 b6d2d3f91b36e2aa7e93e699595c39e5 286 SUPERFAMILY SSF55846 24 206 4.97E-43 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_1113 556d0fff5edf4223c55497dda203bd1c 432 Gene3D G3DSA:3.40.190.10 154 427 2.2E-69 T 11-10-2018 dqs_1113 556d0fff5edf4223c55497dda203bd1c 432 SUPERFAMILY SSF53850 46 430 1.58E-39 T 11-10-2018 dqs_1113 556d0fff5edf4223c55497dda203bd1c 432 Gene3D G3DSA:3.40.190.10 50 387 2.2E-69 T 11-10-2018 dqs_1113 556d0fff5edf4223c55497dda203bd1c 432 Pfam PF13416 Bacterial extracellular solute-binding protein 135 355 7.5E-20 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein dqs_2067 a9a00a300cc87df0d474086351e72f68 168 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 168 75.739 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria dqs_2067 a9a00a300cc87df0d474086351e72f68 168 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 5 166 1.3E-50 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria dqs_2067 a9a00a300cc87df0d474086351e72f68 168 Pfam PF03350 Uncharacterized protein family, UPF0114 12 129 2.5E-35 T 11-10-2018 IPR005134 Uncharacterised protein family UPF0114 dqs_1638 d463b4379b4cd3e6f411759c76a05659 314 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 310 4.0E-105 T 11-10-2018 IPR007296 Domain of unknown function DUF403 dqs_0342 7d47b466740d8b48de3be3e6be78fe0f 157 Pfam PF11695 Domain of unknown function (DUF3291) 3 139 2.2E-52 T 11-10-2018 IPR021708 Domain of unknown function DUF3291 dqs_0342 7d47b466740d8b48de3be3e6be78fe0f 157 SUPERFAMILY SSF54909 14 114 1.54E-13 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_1713 393fa3914116ac098e8b4b3042c66da9 143 SUPERFAMILY SSF55729 6 142 5.32E-39 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_1713 393fa3914116ac098e8b4b3042c66da9 143 Pfam PF13673 Acetyltransferase (GNAT) domain 47 142 4.8E-19 T 11-10-2018 IPR000182 GNAT domain dqs_1713 393fa3914116ac098e8b4b3042c66da9 143 Gene3D G3DSA:3.40.630.30 3 142 1.1E-39 T 11-10-2018 dqs_2180 b5f40483627eea790d431968d32d6c89 239 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 4 212 6.8E-62 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_2180 b5f40483627eea790d431968d32d6c89 239 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 229 4.3E-88 T 11-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_2180 b5f40483627eea790d431968d32d6c89 239 SMART SM00479 2 174 3.5E-47 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_2180 b5f40483627eea790d431968d32d6c89 239 SUPERFAMILY SSF53098 1 176 4.18E-54 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_2180 b5f40483627eea790d431968d32d6c89 239 Pfam PF00929 Exonuclease 4 165 2.8E-34 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_2180 b5f40483627eea790d431968d32d6c89 239 Gene3D G3DSA:3.30.420.10 1 179 4.1E-53 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_0693 e6965ada75980f12f2e99bff964c7b4b 224 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 210 2.3E-6 T 11-10-2018 IPR000014 PAS domain dqs_0693 e6965ada75980f12f2e99bff964c7b4b 224 SMART SM00091 90 158 9.9E-4 T 11-10-2018 IPR000014 PAS domain dqs_0693 e6965ada75980f12f2e99bff964c7b4b 224 SMART SM00086 165 208 0.0055 T 11-10-2018 IPR001610 PAC motif dqs_0693 e6965ada75980f12f2e99bff964c7b4b 224 SUPERFAMILY SSF55785 98 210 6.81E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0693 e6965ada75980f12f2e99bff964c7b4b 224 Gene3D G3DSA:3.30.450.20 86 159 3.9E-19 T 11-10-2018 dqs_0693 e6965ada75980f12f2e99bff964c7b4b 224 Gene3D G3DSA:2.10.70.100 162 210 1.4E-11 T 11-10-2018 dqs_0693 e6965ada75980f12f2e99bff964c7b4b 224 Pfam PF08447 PAS fold 113 201 2.4E-18 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 85 104 5.6E-28 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 444 457 5.6E-28 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 311 333 5.6E-28 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 382 396 5.6E-28 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 367 381 5.6E-28 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 Gene3D G3DSA:3.40.710.10 295 484 1.1E-55 T 11-10-2018 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 75 466 1.2E-66 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 49 483 3.3E-92 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 Gene3D G3DSA:3.50.80.20 114 203 2.4E-11 T 11-10-2018 dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 SUPERFAMILY SSF56601 43 486 2.46E-89 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_3801 25a14adefe91ca64bce84b6a8edec70c 488 Gene3D G3DSA:3.40.710.10 48 113 4.3E-7 T 11-10-2018 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 SUPERFAMILY SSF54913 1 112 1.62E-44 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 PRINTS PR00340 P-II protein signature 23 41 2.3E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 PRINTS PR00340 P-II protein signature 83 103 2.3E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 PRINTS PR00340 P-II protein signature 2 17 2.3E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 PRINTS PR00340 P-II protein signature 52 75 2.3E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 Gene3D G3DSA:3.30.70.120 1 112 5.1E-46 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 SMART SM00938 4 105 7.4E-66 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 PIRSF PIRSF039144 1 112 1.9E-53 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_3890 b136c8715e4ca6b90c516a0b2b1373ad 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.6E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 dqs_1229 7e38402a666a803beac04ea4095a1b70 346 Gene3D G3DSA:1.10.10.60 242 345 2.6E-28 T 11-10-2018 dqs_1229 7e38402a666a803beac04ea4095a1b70 346 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 295 338 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_1229 7e38402a666a803beac04ea4095a1b70 346 SMART SM00342 258 342 7.7E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_1229 7e38402a666a803beac04ea4095a1b70 346 SUPERFAMILY SSF46689 295 340 9.36E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1229 7e38402a666a803beac04ea4095a1b70 346 Pfam PF14525 AraC-binding-like domain 27 209 9.2E-39 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like dqs_1229 7e38402a666a803beac04ea4095a1b70 346 Pfam PF12833 Helix-turn-helix domain 264 341 1.3E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3427 feb00ea073d9f0a8a60f6db5b7379948 468 SMART SM01027 249 387 5.8E-54 T 11-10-2018 IPR022712 Beta-Casp domain dqs_3427 feb00ea073d9f0a8a60f6db5b7379948 468 Pfam PF00753 Metallo-beta-lactamase superfamily 22 200 7.0E-13 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3427 feb00ea073d9f0a8a60f6db5b7379948 468 Pfam PF10996 Beta-Casp domain 250 387 1.3E-27 T 11-10-2018 IPR022712 Beta-Casp domain dqs_3427 feb00ea073d9f0a8a60f6db5b7379948 468 SUPERFAMILY SSF56281 4 463 4.95E-108 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3427 feb00ea073d9f0a8a60f6db5b7379948 468 SMART SM00849 17 231 6.9E-11 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3427 feb00ea073d9f0a8a60f6db5b7379948 468 Gene3D G3DSA:3.40.50.10890 217 416 1.6E-119 T 11-10-2018 dqs_3427 feb00ea073d9f0a8a60f6db5b7379948 468 Gene3D G3DSA:3.60.15.10 8 448 1.6E-119 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3427 feb00ea073d9f0a8a60f6db5b7379948 468 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 404 465 7.3E-12 T 11-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Gene3D G3DSA:3.30.70.1430 40 792 1.1E-283 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 SUPERFAMILY SSF82693 544 644 4.97E-10 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Gene3D G3DSA:3.30.2090.10 694 784 1.1E-283 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.3E-53 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.3E-53 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 1.3E-53 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 1.3E-53 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 1.3E-53 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 1.3E-53 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 PRINTS PR00702 Acriflavin resistance protein family signature 531 548 1.3E-53 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 1.3E-53 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Gene3D G3DSA:3.30.70.1430 546 644 1.1E-283 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Pfam PF00873 AcrB/AcrD/AcrF family 5 1003 7.5E-228 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 SUPERFAMILY SSF82693 137 312 4.39E-13 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 SUPERFAMILY SSF82714 695 781 3.92E-8 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Gene3D G3DSA:3.30.70.1440 645 841 1.1E-283 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Gene3D G3DSA:1.20.1640.10 10 499 1.1E-283 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Gene3D G3DSA:1.20.1640.10 500 1000 1.1E-283 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 SUPERFAMILY SSF82866 290 488 5.1E-47 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Gene3D G3DSA:3.30.2090.10 178 268 1.1E-283 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 SUPERFAMILY SSF82866 783 1005 3.14E-43 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 SUPERFAMILY SSF82693 40 133 1.19E-21 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 Gene3D G3DSA:3.30.70.1320 134 324 1.1E-283 T 11-10-2018 dqs_0854 947c6a6bda533c5fcb627be0561d391d 1017 SUPERFAMILY SSF82714 182 264 2.35E-11 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains dqs_0922 9818aaf32bbf80ec7d734c1504024662 414 SUPERFAMILY SSF53756 46 406 8.9E-14 T 11-10-2018 dqs_0922 9818aaf32bbf80ec7d734c1504024662 414 Pfam PF00534 Glycosyl transferases group 1 275 389 7.6E-7 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_0922 9818aaf32bbf80ec7d734c1504024662 414 Gene3D G3DSA:3.40.50.2000 213 392 1.4E-61 T 11-10-2018 dqs_0922 9818aaf32bbf80ec7d734c1504024662 414 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 27 204 5.8E-62 T 11-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 dqs_0922 9818aaf32bbf80ec7d734c1504024662 414 Gene3D G3DSA:3.40.50.11720 27 202 2.5E-48 T 11-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 131 146 - T 11-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 Gene3D G3DSA:3.40.50.2020 9 302 2.7E-130 T 11-10-2018 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 SMART SM01400 6 123 5.7E-77 T 11-10-2018 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 6 315 48.779 T 11-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 Pfam PF14572 Phosphoribosyl synthetase-associated domain 205 314 4.0E-27 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 7 314 8.6E-122 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 Gene3D G3DSA:3.40.50.2020 150 291 2.7E-130 T 11-10-2018 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 SUPERFAMILY SSF53271 71 307 1.05E-62 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 6 123 8.2E-48 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 dqs_0829 c8866e054e064d74d7a397d19004ffe5 316 SUPERFAMILY SSF53271 9 97 2.17E-5 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 Gene3D G3DSA:2.40.50.920 16 94 4.3E-6 T 11-10-2018 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 SMART SM00382 178 317 2.1E-25 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 Gene3D G3DSA:1.10.8.60 316 393 2.1E-29 T 11-10-2018 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 182 314 9.5E-46 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 SUPERFAMILY SSF52540 138 385 2.13E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 607 37.434 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 Pfam PF01434 Peptidase family M41 376 584 1.5E-80 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 Gene3D G3DSA:3.40.50.300 133 314 2.5E-70 T 11-10-2018 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 Gene3D G3DSA:1.20.58.760 396 594 1.4E-74 T 11-10-2018 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 Pfam PF06480 FtsH Extracellular 2 65 1.2E-6 T 11-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 SUPERFAMILY SSF140990 396 594 7.32E-75 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 94 585 1.3E-241 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 dqs_1510 918331b71ebcede4b8dd807c30c4919d 619 ProSitePatterns PS00674 AAA-protein family signature. 285 303 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 dqs_2058 a23e882d332c07292c88931761891010 399 Gene3D G3DSA:1.10.1740.10 313 397 2.4E-29 T 11-10-2018 dqs_2058 a23e882d332c07292c88931761891010 399 Gene3D G3DSA:3.40.50.720 2 155 2.6E-50 T 11-10-2018 dqs_2058 a23e882d332c07292c88931761891010 399 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 9 137 2.3E-45 T 11-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 dqs_2058 a23e882d332c07292c88931761891010 399 PIRSF PIRSF006205 6 398 5.6E-150 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 dqs_2058 a23e882d332c07292c88931761891010 399 SUPERFAMILY SSF51735 7 155 3.78E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2058 a23e882d332c07292c88931761891010 399 SUPERFAMILY SSF55347 131 274 2.39E-59 T 11-10-2018 dqs_2058 a23e882d332c07292c88931761891010 399 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 9 392 46.346 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 dqs_2058 a23e882d332c07292c88931761891010 399 SUPERFAMILY SSF69055 302 394 2.35E-30 T 11-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 dqs_2058 a23e882d332c07292c88931761891010 399 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 2.9E-42 T 11-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 dqs_2058 a23e882d332c07292c88931761891010 399 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 151 239 8.0E-38 T 11-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 dqs_2058 a23e882d332c07292c88931761891010 399 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 394 1.9E-158 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 67 221 1.3E-61 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 Hamap MF_00930 Transcription elongation factor GreB [greB]. 65 222 50.761 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 148 221 1.6E-25 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 81 112 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 Gene3D G3DSA:1.10.287.180 66 140 2.6E-26 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 SUPERFAMILY SSF46557 67 141 3.66E-25 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 185 201 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 Pfam PF03449 Transcription elongation factor, N-terminal 68 138 3.2E-23 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 Hamap MF_00105 Transcription elongation factor GreA [greA]. 66 220 27.125 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 Gene3D G3DSA:3.10.50.30 142 222 2.0E-26 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 dqs_1548 5eeacfbf766af6f3069f877a9ad24d0c 222 SUPERFAMILY SSF54534 148 221 3.4E-21 T 11-10-2018 dqs_2734 5958b3ac417afedffb11aaa6b144c69b 412 Gene3D G3DSA:1.20.1250.20 8 195 4.6E-24 T 11-10-2018 dqs_2734 5958b3ac417afedffb11aaa6b144c69b 412 Gene3D G3DSA:1.20.1250.20 212 402 7.3E-13 T 11-10-2018 dqs_2734 5958b3ac417afedffb11aaa6b144c69b 412 Pfam PF07690 Major Facilitator Superfamily 19 365 1.1E-29 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_2734 5958b3ac417afedffb11aaa6b144c69b 412 SUPERFAMILY SSF103473 8 401 1.96E-46 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 Gene3D G3DSA:3.40.50.300 199 362 1.3E-41 T 11-10-2018 dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 PIRSF PIRSF006809 3 364 1.2E-138 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 Pfam PF13167 GTP-binding GTPase N-terminal 24 112 3.0E-30 T 11-10-2018 IPR025121 GTPase HflX, N-terminal dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 Pfam PF01926 50S ribosome-binding GTPase 200 317 4.6E-21 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 5.9E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 266 284 5.9E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 Gene3D G3DSA:3.40.50.11060 18 138 1.6E-37 T 11-10-2018 dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 4.0E-27 T 11-10-2018 IPR032305 GTP-binding protein, middle domain dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 SUPERFAMILY SSF52540 197 359 4.5E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 Hamap MF_00900 GTPase HflX [hflX]. 27 379 45.906 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 dqs_1005 6b7b8b83cb0aabdf171178905e7f2403 379 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 357 5.5E-148 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 dqs_1155 61f3c10ede553065447cd8bfaa8db8c3 404 Gene3D G3DSA:3.40.50.1100 62 393 3.5E-184 T 11-10-2018 dqs_1155 61f3c10ede553065447cd8bfaa8db8c3 404 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 15 399 1.0E-189 T 11-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 dqs_1155 61f3c10ede553065447cd8bfaa8db8c3 404 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 89 103 - T 11-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 dqs_1155 61f3c10ede553065447cd8bfaa8db8c3 404 Gene3D G3DSA:3.40.50.1100 18 214 3.5E-184 T 11-10-2018 dqs_1155 61f3c10ede553065447cd8bfaa8db8c3 404 PIRSF PIRSF001413 1 404 1.7E-162 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 dqs_1155 61f3c10ede553065447cd8bfaa8db8c3 404 SUPERFAMILY SSF53686 11 398 6.55E-149 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme dqs_1155 61f3c10ede553065447cd8bfaa8db8c3 404 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 61 387 7.9E-47 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme dqs_1155 61f3c10ede553065447cd8bfaa8db8c3 404 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 10 400 52.53 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 dqs_2408 2c4c423d32f16fd64fde3a04382c685a 375 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 375 97.083 T 11-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 dqs_2408 2c4c423d32f16fd64fde3a04382c685a 375 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 14 297 7.4E-95 T 11-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 dqs_2408 2c4c423d32f16fd64fde3a04382c685a 375 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 15 289 1.7E-53 T 11-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 dqs_2408 2c4c423d32f16fd64fde3a04382c685a 375 SUPERFAMILY SSF55931 5 369 1.83E-107 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 dqs_2408 2c4c423d32f16fd64fde3a04382c685a 375 Gene3D G3DSA:3.30.590.20 1 372 2.3E-94 T 11-10-2018 dqs_2599 a15f2dc60f834b96fc3b93c7ac19ca2b 146 SMART SM00448 5 130 2.4E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2599 a15f2dc60f834b96fc3b93c7ac19ca2b 146 Pfam PF00072 Response regulator receiver domain 7 129 7.5E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2599 a15f2dc60f834b96fc3b93c7ac19ca2b 146 SUPERFAMILY SSF52172 6 141 5.69E-29 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2599 a15f2dc60f834b96fc3b93c7ac19ca2b 146 Gene3D G3DSA:3.40.50.2300 2 145 3.1E-31 T 11-10-2018 dqs_1587 71c581330deaa79fe83bac685babdc22 357 PIRSF PIRSF036915 1 357 2.3E-134 T 11-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 dqs_1587 71c581330deaa79fe83bac685babdc22 357 Hamap MF_00493 Transaldolase [tal]. 1 357 129.663 T 11-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 dqs_1587 71c581330deaa79fe83bac685babdc22 357 ProSitePatterns PS00958 Transaldolase active site. 135 152 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 dqs_1587 71c581330deaa79fe83bac685babdc22 357 TIGRFAM TIGR00876 tal_mycobact: transaldolase 13 354 3.8E-94 T 11-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 dqs_1587 71c581330deaa79fe83bac685babdc22 357 ProSitePatterns PS01054 Transaldolase signature 1. 39 47 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 dqs_1587 71c581330deaa79fe83bac685babdc22 357 SUPERFAMILY SSF51569 1 355 1.95E-71 T 11-10-2018 dqs_1587 71c581330deaa79fe83bac685babdc22 357 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 354 2.3E-75 T 11-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 dqs_1587 71c581330deaa79fe83bac685babdc22 357 Gene3D G3DSA:3.20.20.70 2 356 3.2E-142 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2323 cd88e3cd86933b22339c3b32b1b9c05d 88 SUPERFAMILY SSF46992 3 86 2.49E-27 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2323 cd88e3cd86933b22339c3b32b1b9c05d 88 Pfam PF01649 Ribosomal protein S20 2 84 7.8E-25 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2323 cd88e3cd86933b22339c3b32b1b9c05d 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 1.3E-24 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2323 cd88e3cd86933b22339c3b32b1b9c05d 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.755 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2323 cd88e3cd86933b22339c3b32b1b9c05d 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 20 83 2.0E-26 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2323 cd88e3cd86933b22339c3b32b1b9c05d 88 Gene3D G3DSA:1.20.58.110 1 87 6.1E-26 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1662 f488467bfec9bff466d90edaf9bfc9fa 320 SUPERFAMILY SSF52518 5 320 1.36E-81 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_1662 f488467bfec9bff466d90edaf9bfc9fa 320 Gene3D G3DSA:3.40.50.970 4 320 1.7E-102 T 11-10-2018 dqs_1662 f488467bfec9bff466d90edaf9bfc9fa 320 Pfam PF00676 Dehydrogenase E1 component 17 310 1.4E-60 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 dqs_3793 a2f6b52eeea3b15b7b6ca6cf78822712 224 Gene3D G3DSA:1.10.287.540 70 106 1.7E-6 T 11-10-2018 dqs_3793 a2f6b52eeea3b15b7b6ca6cf78822712 224 Gene3D G3DSA:3.30.70.60 107 212 7.1E-34 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 dqs_3793 a2f6b52eeea3b15b7b6ca6cf78822712 224 PIRSF PIRSF016482 13 222 1.7E-53 T 11-10-2018 IPR007445 Pilus assembly protein, PilO dqs_3793 a2f6b52eeea3b15b7b6ca6cf78822712 224 Pfam PF04350 Pilus assembly protein, PilO 62 203 4.8E-53 T 11-10-2018 IPR007445 Pilus assembly protein, PilO dqs_1162 2bbe839a75868ac56552ca763104243b 389 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 7 387 4.0E-180 T 11-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 dqs_1162 2bbe839a75868ac56552ca763104243b 389 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 387 2.8E-140 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_1162 2bbe839a75868ac56552ca763104243b 389 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 198 212 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_1162 2bbe839a75868ac56552ca763104243b 389 SUPERFAMILY SSF53383 26 387 5.72E-118 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1162 2bbe839a75868ac56552ca763104243b 389 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 8 388 55.283 T 11-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 dqs_1162 2bbe839a75868ac56552ca763104243b 389 PIRSF PIRSF001434 1 389 3.5E-132 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_1162 2bbe839a75868ac56552ca763104243b 389 Gene3D G3DSA:3.40.640.10 2 253 1.4E-87 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_1162 2bbe839a75868ac56552ca763104243b 389 Gene3D G3DSA:3.90.1150.10 257 389 3.9E-50 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_0236 a9e43b2799a530f508ea1e18dcef53fc 490 Gene3D G3DSA:3.40.605.10 22 479 1.8E-180 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_0236 a9e43b2799a530f508ea1e18dcef53fc 490 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 32 482 2.2E-196 T 11-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 dqs_0236 a9e43b2799a530f508ea1e18dcef53fc 490 Gene3D G3DSA:3.40.309.10 266 456 1.8E-180 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_0236 a9e43b2799a530f508ea1e18dcef53fc 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 287 298 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 dqs_0236 a9e43b2799a530f508ea1e18dcef53fc 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 259 266 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 dqs_0236 a9e43b2799a530f508ea1e18dcef53fc 490 Pfam PF00171 Aldehyde dehydrogenase family 21 483 4.5E-170 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_0236 a9e43b2799a530f508ea1e18dcef53fc 490 SUPERFAMILY SSF53720 8 486 2.49E-170 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 PRINTS PR00045 Sigma-54 factor signature 386 398 8.0E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 PRINTS PR00045 Sigma-54 factor signature 402 413 8.0E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 PRINTS PR00045 Sigma-54 factor signature 460 478 8.0E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 PRINTS PR00045 Sigma-54 factor signature 199 216 8.0E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 484 8.1E-142 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 6.2E-17 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 Pfam PF04552 Sigma-54, DNA binding domain 330 484 6.0E-67 T 11-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 374 393 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 465 472 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 Gene3D G3DSA:1.10.10.60 427 485 8.3E-23 T 11-10-2018 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 Pfam PF04963 Sigma-54 factor, core binding domain 122 315 4.4E-58 T 11-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 Gene3D G3DSA:1.10.10.1330 130 257 1.2E-20 T 11-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily dqs_0514 770409ed8a2f51a1faa3c6186f0d2139 486 PIRSF PIRSF000774 1 486 5.7E-153 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 dqs_0265 c055990334a441138ad7ae3a97dc754b 451 Pfam PF11981 Domain of unknown function (DUF3482) 164 432 1.4E-88 T 11-10-2018 IPR021871 Protein of unknown function DUF3482 dqs_0265 c055990334a441138ad7ae3a97dc754b 451 SUPERFAMILY SSF52540 3 196 2.67E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0265 c055990334a441138ad7ae3a97dc754b 451 Pfam PF01926 50S ribosome-binding GTPase 5 151 7.7E-14 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_0265 c055990334a441138ad7ae3a97dc754b 451 Gene3D G3DSA:3.40.50.300 2 197 9.7E-24 T 11-10-2018 dqs_2268 61aec7d0c8b150a9805bdc61a2c8fa01 117 SUPERFAMILY SSF101386 5 116 3.43E-37 T 11-10-2018 dqs_2268 61aec7d0c8b150a9805bdc61a2c8fa01 117 PIRSF PIRSF029826 1 117 3.1E-45 T 11-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 dqs_2268 61aec7d0c8b150a9805bdc61a2c8fa01 117 Gene3D G3DSA:1.10.287.1080 1 109 4.9E-36 T 11-10-2018 dqs_2268 61aec7d0c8b150a9805bdc61a2c8fa01 117 Pfam PF12643 MazG-like family 37 117 5.1E-13 T 11-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 dqs_2657 24b083a69bc04e32676a38303ee2a23a 304 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 148 171 1.8E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2657 24b083a69bc04e32676a38303ee2a23a 304 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 127 140 1.8E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2657 24b083a69bc04e32676a38303ee2a23a 304 Pfam PF00440 Bacterial regulatory proteins, tetR family 127 173 1.3E-18 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2657 24b083a69bc04e32676a38303ee2a23a 304 Gene3D G3DSA:1.10.10.60 111 169 2.0E-19 T 11-10-2018 dqs_2657 24b083a69bc04e32676a38303ee2a23a 304 Gene3D G3DSA:1.10.357.10 170 303 4.9E-26 T 11-10-2018 dqs_2657 24b083a69bc04e32676a38303ee2a23a 304 SUPERFAMILY SSF48498 194 302 3.56E-11 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_2657 24b083a69bc04e32676a38303ee2a23a 304 SUPERFAMILY SSF46689 120 199 1.55E-21 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3188 4575f405d81a36c90753ce16dba993a6 525 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 3 515 6.1E-171 T 11-10-2018 IPR011966 Phenylacetic acid degradation protein PaaN KEGG: 00360+3.3.2.12+1.2.1.91 dqs_3188 4575f405d81a36c90753ce16dba993a6 525 SUPERFAMILY SSF53720 3 503 9.16E-79 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 dqs_3188 4575f405d81a36c90753ce16dba993a6 525 Gene3D G3DSA:3.40.309.10 258 475 1.7E-153 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 dqs_3188 4575f405d81a36c90753ce16dba993a6 525 Gene3D G3DSA:3.40.605.10 9 487 1.7E-153 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_3188 4575f405d81a36c90753ce16dba993a6 525 Pfam PF00171 Aldehyde dehydrogenase family 11 442 8.2E-65 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 dqs_0574 872f3b0a56c9b1318175a1ffe69d201f 255 Gene3D G3DSA:1.25.10.10 10 251 1.1E-76 T 11-10-2018 IPR011989 Armadillo-like helical dqs_0574 872f3b0a56c9b1318175a1ffe69d201f 255 Pfam PF01816 Leucine rich repeat variant 143 166 1.3E-5 T 11-10-2018 IPR004830 Leucine rich repeat variant dqs_0574 872f3b0a56c9b1318175a1ffe69d201f 255 Pfam PF01816 Leucine rich repeat variant 167 190 1.3E-5 T 11-10-2018 IPR004830 Leucine rich repeat variant dqs_0574 872f3b0a56c9b1318175a1ffe69d201f 255 Pfam PF05484 LRV protein FeS4 cluster 21 63 1.9E-11 T 11-10-2018 IPR008665 LRV FeS4 cluster dqs_0574 872f3b0a56c9b1318175a1ffe69d201f 255 SUPERFAMILY SSF48371 20 227 6.21E-42 T 11-10-2018 IPR016024 Armadillo-type fold dqs_1740 7cea3763bf5cb2424de7b275a57a1972 218 SUPERFAMILY SSF56784 5 214 4.47E-57 T 11-10-2018 IPR036412 HAD-like superfamily dqs_1740 7cea3763bf5cb2424de7b275a57a1972 218 Gene3D G3DSA:3.40.50.1000 8 206 1.2E-51 T 11-10-2018 IPR023214 HAD superfamily dqs_1740 7cea3763bf5cb2424de7b275a57a1972 218 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 102 179 1.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_1740 7cea3763bf5cb2424de7b275a57a1972 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 184 2.1E-33 T 11-10-2018 dqs_1740 7cea3763bf5cb2424de7b275a57a1972 218 Gene3D G3DSA:1.10.150.240 20 85 1.2E-51 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 dqs_0362 5af6d0e7153090bcfafb88349de19695 91 Gene3D G3DSA:1.10.260.40 3 90 7.4E-11 T 11-10-2018 dqs_2639 2d921994d12f407f55de474676e2b532 867 Pfam PF00391 PEP-utilising enzyme, mobile domain 792 861 2.7E-22 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 dqs_2639 2d921994d12f407f55de474676e2b532 867 Gene3D G3DSA:3.50.30.10 764 866 2.8E-30 T 11-10-2018 dqs_2639 2d921994d12f407f55de474676e2b532 867 Gene3D G3DSA:3.30.470.20 176 320 1.2E-26 T 11-10-2018 dqs_2639 2d921994d12f407f55de474676e2b532 867 SUPERFAMILY SSF56059 17 345 3.85E-64 T 11-10-2018 dqs_2639 2d921994d12f407f55de474676e2b532 867 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 18 311 1.5E-58 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 dqs_2639 2d921994d12f407f55de474676e2b532 867 SUPERFAMILY SSF52009 764 864 9.16E-27 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 dqs_2639 2d921994d12f407f55de474676e2b532 867 Gene3D G3DSA:3.30.1490.20 12 174 1.2E-42 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_1686 952c5bf09ac166d7fb64c17cb19224f1 84 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 3 84 1.3E-21 T 11-10-2018 dqs_1686 952c5bf09ac166d7fb64c17cb19224f1 84 Gene3D G3DSA:3.10.20.30 2 84 2.4E-23 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_1686 952c5bf09ac166d7fb64c17cb19224f1 84 SUPERFAMILY SSF54285 3 84 1.87E-21 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp dqs_1686 952c5bf09ac166d7fb64c17cb19224f1 84 Pfam PF02597 ThiS family 5 84 1.3E-19 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 Gene3D G3DSA:1.20.1330.10 43 139 1.4E-63 T 11-10-2018 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 Gene3D G3DSA:1.20.1330.10 468 519 4.5E-40 T 11-10-2018 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 Gene3D G3DSA:2.30.220.10 334 354 4.5E-40 T 11-10-2018 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 Gene3D G3DSA:1.20.58.1830 525 559 4.5E-40 T 11-10-2018 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 Gene3D G3DSA:1.20.58.1830 3 31 1.4E-63 T 11-10-2018 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 PRINTS PR00207 Flagellin signature 74 93 1.1E-22 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 PRINTS PR00207 Flagellin signature 35 52 1.1E-22 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 PRINTS PR00207 Flagellin signature 109 132 1.1E-22 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 138 3.4E-38 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 Pfam PF00700 Bacterial flagellin C-terminal helical region 475 559 9.9E-21 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 SUPERFAMILY SSF64518 1 559 5.89E-87 T 11-10-2018 dqs_2690 a5660194022cbca36f8eb734caa56e06 560 Gene3D G3DSA:2.170.280.10 355 467 4.5E-40 T 11-10-2018 dqs_2954 a709c435240e67383780edf23e087409 164 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 31.42 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 dqs_2954 a709c435240e67383780edf23e087409 164 Pfam PF00588 SpoU rRNA Methylase family 2 141 8.0E-30 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 dqs_2954 a709c435240e67383780edf23e087409 164 PIRSF PIRSF029256 1 154 5.4E-61 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 dqs_2954 a709c435240e67383780edf23e087409 164 Gene3D G3DSA:3.40.1280.10 1 154 9.6E-62 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal dqs_2954 a709c435240e67383780edf23e087409 164 SUPERFAMILY SSF75217 1 151 5.1E-44 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 Gene3D G3DSA:3.40.190.10 168 266 1.3E-72 T 11-10-2018 dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 Gene3D G3DSA:1.10.10.10 1 85 2.6E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.1E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.9E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.9E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.9E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 Pfam PF03466 LysR substrate binding domain 93 293 5.8E-24 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 SUPERFAMILY SSF46785 4 82 9.25E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 SUPERFAMILY SSF53850 88 293 2.53E-45 T 11-10-2018 dqs_2563 b9e0e655785b3b2d47bd7bcb561e1beb 302 Gene3D G3DSA:3.40.190.10 90 290 1.3E-72 T 11-10-2018 dqs_3180 c6a84fb184a319f16b6d664d483e931e 265 SMART SM00382 58 242 1.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3180 c6a84fb184a319f16b6d664d483e931e 265 SUPERFAMILY SSF52540 33 260 4.55E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3180 c6a84fb184a319f16b6d664d483e931e 265 Gene3D G3DSA:3.40.50.300 29 265 4.6E-59 T 11-10-2018 dqs_3180 c6a84fb184a319f16b6d664d483e931e 265 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3180 c6a84fb184a319f16b6d664d483e931e 265 Pfam PF00005 ABC transporter 49 193 3.7E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 Pfam PF00330 Aconitase family (aconitate hydratase) 8 460 8.3E-156 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 ProSitePatterns PS00450 Aconitase family signature 1. 341 357 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 PRINTS PR00415 Aconitase family signature 110 118 8.0E-43 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 PRINTS PR00415 Aconitase family signature 211 224 8.0E-43 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 PRINTS PR00415 Aconitase family signature 402 415 8.0E-43 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 PRINTS PR00415 Aconitase family signature 135 150 8.0E-43 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 PRINTS PR00415 Aconitase family signature 121 134 8.0E-43 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 PRINTS PR00415 Aconitase family signature 345 356 8.0E-43 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 PRINTS PR00415 Aconitase family signature 197 210 8.0E-43 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 PRINTS PR00415 Aconitase family signature 288 302 8.0E-43 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 467 2.4E-237 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 SUPERFAMILY SSF53732 3 468 1.83E-163 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 Gene3D G3DSA:3.30.499.10 326 469 9.8E-50 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 ProSitePatterns PS01244 Aconitase family signature 2. 402 415 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 Gene3D G3DSA:3.30.499.20 5 288 1.3E-97 T 11-10-2018 dqs_1147 248ad36b06a692ac1b89ae5382fdb23d 469 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 469 59.737 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 PRINTS PR01100 Shikimate kinase family signature 30 43 1.8E-22 T 11-10-2018 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 PRINTS PR01100 Shikimate kinase family signature 6 21 1.8E-22 T 11-10-2018 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 PRINTS PR01100 Shikimate kinase family signature 58 66 1.8E-22 T 11-10-2018 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 PRINTS PR01100 Shikimate kinase family signature 97 114 1.8E-22 T 11-10-2018 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 PRINTS PR01100 Shikimate kinase family signature 76 85 1.8E-22 T 11-10-2018 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 Hamap MF_00109 Shikimate kinase [aroK]. 3 169 29.235 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 Pfam PF01202 Shikimate kinase 12 168 2.8E-52 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 ProSitePatterns PS01128 Shikimate kinase signature. 59 84 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 SUPERFAMILY SSF52540 6 168 8.42E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3790 fe2ab19145e5f10c09b4bd87dc36da63 178 Gene3D G3DSA:3.40.50.300 5 175 1.2E-57 T 11-10-2018 dqs_3036 151f678a0774b223a7c07269e88d1581 304 Gene3D G3DSA:3.40.1500.10 1 304 9.6E-127 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 165 189 - T 11-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 Pfam PF01218 Coproporphyrinogen III oxidase 8 303 2.8E-125 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 PIRSF PIRSF000166 4 304 1.5E-120 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 2 279 52.597 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 SUPERFAMILY SSF102886 6 303 3.01E-130 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 PRINTS PR00073 Coprogen oxidase signature 123 145 6.4E-83 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 PRINTS PR00073 Coprogen oxidase signature 264 290 6.4E-83 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 PRINTS PR00073 Coprogen oxidase signature 29 45 6.4E-83 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 PRINTS PR00073 Coprogen oxidase signature 88 112 6.4E-83 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 PRINTS PR00073 Coprogen oxidase signature 236 263 6.4E-83 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 PRINTS PR00073 Coprogen oxidase signature 161 190 6.4E-83 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_3036 151f678a0774b223a7c07269e88d1581 304 PRINTS PR00073 Coprogen oxidase signature 46 67 6.4E-83 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 dqs_1871 1d5f071fbe3d52c830b1fb311005e35d 352 SUPERFAMILY SSF53756 23 339 2.83E-59 T 11-10-2018 dqs_1871 1d5f071fbe3d52c830b1fb311005e35d 352 Gene3D G3DSA:3.40.50.2000 185 340 6.1E-33 T 11-10-2018 dqs_1871 1d5f071fbe3d52c830b1fb311005e35d 352 Gene3D G3DSA:3.40.50.2000 16 170 2.5E-15 T 11-10-2018 dqs_1871 1d5f071fbe3d52c830b1fb311005e35d 352 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 99 314 1.9E-24 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 dqs_0095 9a0ef2a4359d967e810052d76478cf04 388 PIRSF PIRSF015557 7 385 3.5E-146 T 11-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 dqs_0095 9a0ef2a4359d967e810052d76478cf04 388 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 12 380 1.9E-144 T 11-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 dqs_0095 9a0ef2a4359d967e810052d76478cf04 388 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 12 381 2.1E-151 T 11-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 dqs_3057 c0b84f7aa67375a54e3abd5aaeb7c469 1402 Pfam PF05567 Neisseria PilC beta-propeller domain 947 1225 2.4E-55 T 11-10-2018 IPR008707 PilC beta-propeller domain dqs_3057 c0b84f7aa67375a54e3abd5aaeb7c469 1402 SUPERFAMILY SSF50998 932 1380 1.96E-14 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily dqs_3057 c0b84f7aa67375a54e3abd5aaeb7c469 1402 Gene3D G3DSA:2.130.10.10 891 1229 2.3E-10 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 562 646 9.7E-6 T 11-10-2018 dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 Gene3D G3DSA:3.40.50.300 1417 1638 4.1E-45 T 11-10-2018 dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 SMART SM00382 1069 1604 0.009 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 Pfam PF08378 Nuclease-related domain 34 128 6.7E-9 T 11-10-2018 IPR011528 Nuclease-related domain, NERD dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 SUPERFAMILY SSF52540 1052 1614 1.92E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 Pfam PF13086 AAA domain 1055 1373 2.1E-39 T 11-10-2018 dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 SUPERFAMILY SSF56112 310 464 2.67E-8 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 Gene3D G3DSA:3.30.200.20 543 581 2.4E-11 T 11-10-2018 dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 SUPERFAMILY SSF56112 515 681 3.42E-16 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 Gene3D G3DSA:1.10.510.10 582 689 2.4E-11 T 11-10-2018 dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 Gene3D G3DSA:1.10.510.10 302 481 3.6E-7 T 11-10-2018 dqs_1072 05f27df89d687225ddccb4755ccb466f 1642 Pfam PF13087 AAA domain 1395 1604 1.5E-40 T 11-10-2018 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 SUPERFAMILY SSF55681 9 292 1.52E-135 T 11-10-2018 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 8 293 61.208 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 Gene3D G3DSA:3.30.930.10 3 216 8.7E-113 T 11-10-2018 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 9 299 9.1E-163 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.0E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 62 77 4.0E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 114 138 4.0E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 83 103 4.0E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 140 160 4.0E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 163 178 4.0E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 10 292 8.7E-153 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0855 8b11039e6de978c98d9fb9d117353a76 308 Gene3D G3DSA:1.20.58.180 217 298 1.2E-35 T 11-10-2018 dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 Gene3D G3DSA:3.40.190.10 164 265 4.2E-49 T 11-10-2018 dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 SUPERFAMILY SSF53850 91 295 1.57E-49 T 11-10-2018 dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.3E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 Gene3D G3DSA:1.10.10.10 1 86 1.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 Pfam PF03466 LysR substrate binding domain 91 291 1.6E-54 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 Gene3D G3DSA:3.40.190.10 91 287 4.2E-49 T 11-10-2018 dqs_1396 0c6b0bf804e545e4e58bd69372f7923e 308 SUPERFAMILY SSF46785 1 107 1.45E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 444 1.4E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 SMART SM00388 234 300 4.8E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 SUPERFAMILY SSF55874 289 438 3.27E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 Gene3D G3DSA:1.10.287.130 184 299 3.3E-22 T 11-10-2018 dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 Pfam PF08521 Two-component sensor kinase N-terminal 29 156 2.8E-8 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 Pfam PF00512 His Kinase A (phospho-acceptor) domain 236 298 2.0E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 Gene3D G3DSA:3.30.565.10 300 455 1.5E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 SMART SM00387 344 459 1.2E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 1.8E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 1.8E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_0276 a462b04619fb1c2d8a0cb01318bfb137 463 SUPERFAMILY SSF47384 217 298 2.75E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 174 255 1.4E-29 T 11-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 256 44.215 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 2 255 3.3E-103 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 Gene3D G3DSA:1.20.1180.10 191 256 9.3E-26 T 11-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 Gene3D G3DSA:2.160.10.10 1 188 2.7E-54 T 11-10-2018 dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 PIRSF PIRSF000456 1 256 1.9E-103 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 2 33 1.2E-5 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 137 1.2E-9 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2052 9e97cdca5d1968ad0a7be02ed66fb0e9 256 SUPERFAMILY SSF51161 1 256 1.04E-78 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_2622 7649d52298afd031c280937300100222 179 SUPERFAMILY SSF82784 9 177 1.44E-30 T 11-10-2018 IPR036102 OsmC/Ohr superfamily dqs_2622 7649d52298afd031c280937300100222 179 Pfam PF02566 OsmC-like protein 67 176 2.1E-22 T 11-10-2018 IPR003718 OsmC/Ohr family dqs_2622 7649d52298afd031c280937300100222 179 Gene3D G3DSA:3.30.300.20 19 178 8.2E-30 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 Pfam PF08241 Methyltransferase domain 287 380 1.1E-11 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 Pfam PF13181 Tetratricopeptide repeat 153 183 0.011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 SUPERFAMILY SSF53335 246 445 3.55E-25 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 SMART SM00028 118 151 8.9E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 SMART SM00028 152 185 7.2E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 SMART SM00028 50 83 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 SMART SM00028 16 49 450.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 SMART SM00028 186 219 0.0024 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 SMART SM00028 84 117 0.0084 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 Gene3D G3DSA:1.25.40.10 19 124 6.5E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 Gene3D G3DSA:1.25.40.10 125 237 2.2E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 Pfam PF13432 Tetratricopeptide repeat 89 151 3.6E-9 T 11-10-2018 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 Pfam PF13432 Tetratricopeptide repeat 21 84 6.3E-9 T 11-10-2018 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 SUPERFAMILY SSF48452 23 229 1.9E-39 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 Pfam PF13428 Tetratricopeptide repeat 186 228 7.1E-7 T 11-10-2018 dqs_4051 5f0622f6adde56c0fb1239b5537a9fd7 449 Gene3D G3DSA:3.40.50.150 238 432 1.4E-22 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 Pfam PF00344 SecY translocase 74 412 3.6E-118 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 ProSitePatterns PS00755 Protein secY signature 1. 74 93 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 18 424 9.3E-134 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PIRSF PIRSF004557 7 435 4.4E-124 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 SUPERFAMILY SSF103491 8 419 2.75E-133 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 Gene3D G3DSA:1.10.3370.10 6 424 9.9E-164 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 Hamap MF_01465 Protein translocase subunit SecY [secY]. 8 428 29.878 T 11-10-2018 IPR026593 Protein translocase subunit SecY dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 114 137 5.3E-95 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 5.3E-95 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 5.3E-95 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 5.3E-95 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 5.3E-95 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 73 93 5.3E-95 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 5.3E-95 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 5.3E-95 T 11-10-2018 dqs_3536 fd82dfd7d457a6610ea309eedf02248c 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 21 39 5.3E-95 T 11-10-2018 dqs_0815 24a04df6b30d48cd6ca8839203a55dc4 366 Gene3D G3DSA:3.40.50.10800 226 316 2.5E-79 T 11-10-2018 dqs_0815 24a04df6b30d48cd6ca8839203a55dc4 366 Hamap MF_00569 Quinolinate synthase A [nadA]. 15 365 49.347 T 11-10-2018 IPR023515 Quinolinate synthase A, type 3 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 dqs_0815 24a04df6b30d48cd6ca8839203a55dc4 366 Gene3D G3DSA:3.40.50.10800 32 346 2.5E-79 T 11-10-2018 dqs_0815 24a04df6b30d48cd6ca8839203a55dc4 366 Pfam PF02445 Quinolinate synthetase A protein 22 364 5.0E-103 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 dqs_0815 24a04df6b30d48cd6ca8839203a55dc4 366 SUPERFAMILY SSF142754 25 364 1.44E-94 T 11-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 dqs_0815 24a04df6b30d48cd6ca8839203a55dc4 366 Gene3D G3DSA:3.40.50.10800 104 363 2.5E-79 T 11-10-2018 dqs_0815 24a04df6b30d48cd6ca8839203a55dc4 366 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 19 366 1.9E-92 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 dqs_2395 945a5eb4d6eaa80612c2c486b0eb623a 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 206 1.7E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_2395 945a5eb4d6eaa80612c2c486b0eb623a 222 SUPERFAMILY SSF161098 15 202 5.76E-40 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2395 945a5eb4d6eaa80612c2c486b0eb623a 222 Gene3D G3DSA:1.10.3720.10 3 214 1.1E-47 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2395 945a5eb4d6eaa80612c2c486b0eb623a 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 111 1.3E-28 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 dqs_0294 7aac2e5aad5a772517c1136262e24e51 214 Gene3D G3DSA:3.30.1330.60 40 210 6.0E-38 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_0294 7aac2e5aad5a772517c1136262e24e51 214 SUPERFAMILY SSF103088 81 199 8.11E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_0294 7aac2e5aad5a772517c1136262e24e51 214 Pfam PF00691 OmpA family 91 195 9.1E-19 T 11-10-2018 IPR006665 OmpA-like domain dqs_2843 33951d6d19376d0ea71c3136dd486807 105 Gene3D G3DSA:1.20.58.380 1 105 3.2E-9 T 11-10-2018 dqs_2843 33951d6d19376d0ea71c3136dd486807 105 Pfam PF05400 Flagellar protein FliT 17 100 1.2E-17 T 11-10-2018 IPR008622 Flagellar protein FliT dqs_1808 557e7ee5a31c84afbd46a3cf5caf27a1 110 Pfam PF03960 ArsC family 41 100 9.3E-18 T 11-10-2018 IPR006660 Arsenate reductase-like dqs_1808 557e7ee5a31c84afbd46a3cf5caf27a1 110 Gene3D G3DSA:3.40.30.10 1 103 4.3E-35 T 11-10-2018 dqs_1808 557e7ee5a31c84afbd46a3cf5caf27a1 110 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 100 1.3E-24 T 11-10-2018 IPR006504 Transcriptional regulator Spx/MgsR dqs_1808 557e7ee5a31c84afbd46a3cf5caf27a1 110 SUPERFAMILY SSF52833 1 102 5.22E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1025 27bb050d15ef852eb3dac6ba98074645 119 Gene3D G3DSA:2.60.120.10 3 117 8.3E-22 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_1025 27bb050d15ef852eb3dac6ba98074645 119 Pfam PF07883 Cupin domain 39 104 1.9E-13 T 11-10-2018 IPR013096 Cupin 2, conserved barrel dqs_1025 27bb050d15ef852eb3dac6ba98074645 119 SUPERFAMILY SSF51182 11 115 1.57E-26 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3799 72b96bed6fe58ed6039176932c69d266 424 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 25 421 42.087 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 388 410 9.8E-31 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 174 183 9.8E-31 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 308 326 9.8E-31 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 85 102 9.8E-31 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 Gene3D G3DSA:3.20.20.10 44 285 1.0E-149 T 11-10-2018 IPR029066 PLP-binding barrel dqs_3799 72b96bed6fe58ed6039176932c69d266 424 Gene3D G3DSA:2.40.37.10 26 417 1.0E-149 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 235 251 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site dqs_3799 72b96bed6fe58ed6039176932c69d266 424 SUPERFAMILY SSF50621 264 422 1.13E-55 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 378 391 1.7E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 87 99 1.7E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 280 299 1.7E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 200 213 1.7E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 67 85 1.7E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 21 420 2.1E-157 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 46 289 4.7E-67 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 40 378 2.4E-25 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 dqs_3799 72b96bed6fe58ed6039176932c69d266 424 SUPERFAMILY SSF51419 36 292 1.19E-78 T 11-10-2018 IPR029066 PLP-binding barrel dqs_0078 10e456cbcdd0eed82ab28958be558b67 250 Gene3D G3DSA:3.90.1140.10 46 226 2.6E-9 T 11-10-2018 dqs_0078 10e456cbcdd0eed82ab28958be558b67 250 Pfam PF13563 2'-5' RNA ligase superfamily 76 210 2.5E-18 T 11-10-2018 dqs_0078 10e456cbcdd0eed82ab28958be558b67 250 SUPERFAMILY SSF55144 55 224 1.26E-11 T 11-10-2018 IPR009097 Cyclic phosphodiesterase dqs_1778 e082937708b1849a52485ab564037d50 391 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 203 281 2.0E-11 T 11-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 dqs_1778 e082937708b1849a52485ab564037d50 391 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 50 117 1.7E-7 T 11-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 dqs_1778 e082937708b1849a52485ab564037d50 391 SUPERFAMILY SSF53649 45 388 5.07E-45 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 dqs_1778 e082937708b1849a52485ab564037d50 391 Gene3D G3DSA:3.40.720.10 36 389 2.3E-30 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 100 644 3.0E-209 T 11-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 Pfam PF00128 Alpha amylase, catalytic domain 216 296 3.3E-11 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 Pfam PF11941 Domain of unknown function (DUF3459) 590 677 6.1E-10 T 11-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 SUPERFAMILY SSF81296 78 178 1.54E-16 T 11-10-2018 IPR014756 Immunoglobulin E-set dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 Gene3D G3DSA:2.60.40.10 85 184 2.6E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 SMART SM00642 199 542 2.6E-9 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 Gene3D G3DSA:3.20.20.80 187 599 4.4E-180 T 11-10-2018 dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 85 154 2.6E-6 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 SUPERFAMILY SSF51445 178 600 7.72E-104 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1947 422be62647eb98532fef06fe77dfb4e5 686 Gene3D G3DSA:1.10.10.760 528 571 4.4E-180 T 11-10-2018 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 SMART SM01231 307 370 2.3E-19 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 SMART SM00073 5 102 2.0E-29 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 SUPERFAMILY SSF50341 554 687 5.75E-30 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 308 370 5.4E-16 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 SUPERFAMILY SSF47226 4 126 1.57E-30 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Pfam PF01584 CheW-like domain 560 689 7.7E-26 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 SMART SM00260 547 687 3.3E-32 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Pfam PF01627 Hpt domain 8 100 6.9E-21 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 554 1.5E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 509 1.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 474 1.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 533 1.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 552 1.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Gene3D G3DSA:2.40.50.180 578 642 6.1E-36 T 11-10-2018 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 SUPERFAMILY SSF55874 372 553 8.64E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 SUPERFAMILY SSF47384 308 371 2.98E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 SMART SM00387 415 555 6.0E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Gene3D G3DSA:3.30.565.10 371 554 1.1E-52 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Gene3D G3DSA:1.10.287.560 307 370 2.0E-15 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Gene3D G3DSA:1.20.120.160 1 140 2.2E-39 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 dqs_1575 86d5d80b0f4af8247ea7f36e570cf6b1 696 Gene3D G3DSA:2.30.30.40 555 683 6.1E-36 T 11-10-2018 dqs_1474 d6cf11a5e8d5d2530a915a317b0a81f0 463 Pfam PF06969 HemN C-terminal domain 369 437 5.8E-9 T 11-10-2018 IPR010723 HemN, C-terminal dqs_1474 d6cf11a5e8d5d2530a915a317b0a81f0 463 SMART SM00729 57 278 7.5E-50 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_1474 d6cf11a5e8d5d2530a915a317b0a81f0 463 PIRSF PIRSF000167 8 460 6.1E-164 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 dqs_1474 d6cf11a5e8d5d2530a915a317b0a81f0 463 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 9 463 6.2E-180 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 dqs_1474 d6cf11a5e8d5d2530a915a317b0a81f0 463 Gene3D G3DSA:1.10.10.920 370 463 3.9E-32 T 11-10-2018 dqs_1474 d6cf11a5e8d5d2530a915a317b0a81f0 463 Gene3D G3DSA:3.80.30.20 3 369 3.2E-125 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe dqs_1474 d6cf11a5e8d5d2530a915a317b0a81f0 463 SUPERFAMILY SSF102114 8 450 9.68E-139 T 11-10-2018 dqs_1474 d6cf11a5e8d5d2530a915a317b0a81f0 463 Pfam PF04055 Radical SAM superfamily 63 233 8.7E-19 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_2770 2b54f0eafa43013c274ad83368fd63ee 323 SUPERFAMILY SSF56219 33 308 5.16E-24 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_2770 2b54f0eafa43013c274ad83368fd63ee 323 Gene3D G3DSA:3.60.10.10 35 309 4.6E-38 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 Pfam PF00990 Diguanylate cyclase, GGDEF domain 370 528 1.5E-46 T 11-10-2018 IPR000160 GGDEF domain dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 366 532 1.0E-41 T 11-10-2018 IPR000160 GGDEF domain dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 Gene3D G3DSA:3.30.70.270 370 537 5.3E-55 T 11-10-2018 dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 SMART SM00304 311 364 1.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 SMART SM00267 359 533 3.3E-54 T 11-10-2018 IPR000160 GGDEF domain dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 SUPERFAMILY SSF55073 375 532 2.01E-46 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 Gene3D G3DSA:1.20.1480.50 272 369 2.4E-8 T 11-10-2018 dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 Gene3D G3DSA:3.30.450.20 38 181 6.2E-16 T 11-10-2018 dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 Pfam PF02743 Cache domain 43 273 8.5E-13 T 11-10-2018 IPR033479 Double Cache domain 1 dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 Pfam PF00672 HAMP domain 311 359 3.7E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2456 fdce337fd2e3547526a0692087d2e75e 547 SUPERFAMILY SSF158472 311 360 5.75E-7 T 11-10-2018 dqs_2924 0810408e2e2bd855e53b97eb5bf10b99 418 Gene3D G3DSA:1.20.1530.20 3 405 2.3E-41 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily dqs_2924 0810408e2e2bd855e53b97eb5bf10b99 418 Pfam PF00999 Sodium/hydrogen exchanger family 13 393 1.3E-26 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 dqs_3303 df441e44c3ddeee9032b9abd0d685507 361 SUPERFAMILY SSF52402 64 202 5.95E-16 T 11-10-2018 dqs_3303 df441e44c3ddeee9032b9abd0d685507 361 Gene3D G3DSA:3.40.50.620 53 220 1.8E-11 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3503 861625cc4b0dec59a83d3ccf679d3852 306 SUPERFAMILY SSF52418 81 303 1.02E-34 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_3503 861625cc4b0dec59a83d3ccf679d3852 306 Gene3D G3DSA:1.20.970.10 1 72 6.3E-26 T 11-10-2018 dqs_3503 861625cc4b0dec59a83d3ccf679d3852 306 SUPERFAMILY SSF47648 7 70 4.71E-13 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_3503 861625cc4b0dec59a83d3ccf679d3852 306 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 66 1.6E-9 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_3503 861625cc4b0dec59a83d3ccf679d3852 306 Gene3D G3DSA:3.40.1030.10 73 305 4.4E-75 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 dqs_2768 666f24d658ebb1d5502509bd1f063ae6 325 SUPERFAMILY SSF48179 198 317 1.22E-29 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_2768 666f24d658ebb1d5502509bd1f063ae6 325 Gene3D G3DSA:3.40.50.720 1 196 7.8E-60 T 11-10-2018 dqs_2768 666f24d658ebb1d5502509bd1f063ae6 325 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 160 6.4E-22 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain dqs_2768 666f24d658ebb1d5502509bd1f063ae6 325 Gene3D G3DSA:1.10.1040.10 197 325 7.4E-46 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_2768 666f24d658ebb1d5502509bd1f063ae6 325 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 198 316 6.4E-28 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain dqs_2768 666f24d658ebb1d5502509bd1f063ae6 325 SUPERFAMILY SSF51735 2 116 2.4E-11 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0496 7167245a2977762c6b1812042bea6a3e 306 Pfam PF01171 PP-loop family 44 204 8.4E-14 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 dqs_0496 7167245a2977762c6b1812042bea6a3e 306 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 9 273 55.992 T 11-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 dqs_0496 7167245a2977762c6b1812042bea6a3e 306 SUPERFAMILY SSF52402 22 237 9.52E-52 T 11-10-2018 dqs_0496 7167245a2977762c6b1812042bea6a3e 306 Gene3D G3DSA:3.40.50.620 11 261 1.1E-43 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_0496 7167245a2977762c6b1812042bea6a3e 306 PIRSF PIRSF004976 3 277 3.7E-66 T 11-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 dqs_0738 8724b66a212432a80c338d4233a7034a 223 SUPERFAMILY SSF48695 12 194 6.29E-60 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily dqs_0738 8724b66a212432a80c338d4233a7034a 223 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 15 188 1.9E-73 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal dqs_0738 8724b66a212432a80c338d4233a7034a 223 Gene3D G3DSA:1.10.3820.10 13 193 5.7E-37 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily dqs_0738 8724b66a212432a80c338d4233a7034a 223 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 5 189 3.4E-95 T 11-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 dqs_0738 8724b66a212432a80c338d4233a7034a 223 PIRSF PIRSF000013 1 199 4.5E-102 T 11-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 dqs_3942 0829c283f9378d0ad9ed98a642bab989 196 PRINTS PR01011 Glutathione peroxidase family signature 95 111 7.3E-9 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_3942 0829c283f9378d0ad9ed98a642bab989 196 PRINTS PR01011 Glutathione peroxidase family signature 154 163 7.3E-9 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_3942 0829c283f9378d0ad9ed98a642bab989 196 PRINTS PR01011 Glutathione peroxidase family signature 60 77 7.3E-9 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_3942 0829c283f9378d0ad9ed98a642bab989 196 Gene3D G3DSA:3.40.30.10 29 195 1.6E-41 T 11-10-2018 dqs_3942 0829c283f9378d0ad9ed98a642bab989 196 Pfam PF00255 Glutathione peroxidase 47 147 1.4E-23 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_3942 0829c283f9378d0ad9ed98a642bab989 196 SUPERFAMILY SSF52833 39 192 7.08E-40 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3942 0829c283f9378d0ad9ed98a642bab989 196 PIRSF PIRSF000303 13 195 5.3E-50 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_3942 0829c283f9378d0ad9ed98a642bab989 196 ProSitePatterns PS00460 Glutathione peroxidases active site. 62 77 - T 11-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 dqs_2166 f2596bdaa726923877b83f4272c9694b 114 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 3 110 4.7E-54 T 11-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 dqs_2166 f2596bdaa726923877b83f4272c9694b 114 SUPERFAMILY SSF54292 4 108 9.26E-29 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2166 f2596bdaa726923877b83f4272c9694b 114 Gene3D G3DSA:3.10.20.30 1 113 5.1E-32 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2166 f2596bdaa726923877b83f4272c9694b 114 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 11-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 dqs_2166 f2596bdaa726923877b83f4272c9694b 114 PRINTS PR00355 Adrenodoxin signature 60 74 1.9E-9 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 dqs_2166 f2596bdaa726923877b83f4272c9694b 114 PRINTS PR00355 Adrenodoxin signature 42 52 1.9E-9 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 dqs_2166 f2596bdaa726923877b83f4272c9694b 114 PRINTS PR00355 Adrenodoxin signature 83 91 1.9E-9 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 dqs_2166 f2596bdaa726923877b83f4272c9694b 114 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 91 1.1E-10 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_3756 67e838e19b67a79d6fd99299b8d8da7d 318 PIRSF PIRSF005355 11 314 4.5E-53 T 11-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 dqs_3756 67e838e19b67a79d6fd99299b8d8da7d 318 Pfam PF01040 UbiA prenyltransferase family 32 281 1.2E-29 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 dqs_2430 7195f06f65322de76ae90624ecfa7cfb 97 SUPERFAMILY SSF54285 12 97 7.36E-15 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp dqs_2430 7195f06f65322de76ae90624ecfa7cfb 97 Gene3D G3DSA:3.10.20.30 11 97 6.8E-16 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2430 7195f06f65322de76ae90624ecfa7cfb 97 Pfam PF02597 ThiS family 30 97 8.5E-6 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 dqs_2243 1ccbf9844dddd916f7c0671c9641735f 202 SUPERFAMILY SSF46785 8 85 1.46E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2243 1ccbf9844dddd916f7c0671c9641735f 202 Pfam PF04079 Segregation and condensation complex subunit ScpB 12 172 1.8E-51 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 dqs_2243 1ccbf9844dddd916f7c0671c9641735f 202 Gene3D G3DSA:1.10.10.10 86 182 2.0E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2243 1ccbf9844dddd916f7c0671c9641735f 202 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 10 176 9.2E-33 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 dqs_2243 1ccbf9844dddd916f7c0671c9641735f 202 Gene3D G3DSA:1.10.10.10 5 85 6.0E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2243 1ccbf9844dddd916f7c0671c9641735f 202 PIRSF PIRSF019345 1 199 2.1E-58 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 dqs_2243 1ccbf9844dddd916f7c0671c9641735f 202 SUPERFAMILY SSF46785 88 164 3.18E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1018 65ba3c82c553b4d79128460091fba0e4 264 SUPERFAMILY SSF52540 6 234 7.98E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1018 65ba3c82c553b4d79128460091fba0e4 264 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 25 255 9.4E-104 T 11-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 dqs_1018 65ba3c82c553b4d79128460091fba0e4 264 Gene3D G3DSA:3.40.50.300 3 251 7.4E-63 T 11-10-2018 dqs_1018 65ba3c82c553b4d79128460091fba0e4 264 Pfam PF00005 ABC transporter 25 167 3.3E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1018 65ba3c82c553b4d79128460091fba0e4 264 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1018 65ba3c82c553b4d79128460091fba0e4 264 SMART SM00382 34 217 3.0E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1665 47aaf04e38e756d185194d437468bc7f 414 SUPERFAMILY SSF103473 25 409 1.09E-60 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_1665 47aaf04e38e756d185194d437468bc7f 414 Pfam PF07690 Major Facilitator Superfamily 35 256 1.5E-27 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_1665 47aaf04e38e756d185194d437468bc7f 414 Pfam PF07690 Major Facilitator Superfamily 268 411 6.6E-9 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_1665 47aaf04e38e756d185194d437468bc7f 414 Gene3D G3DSA:1.20.1250.20 27 409 1.1E-51 T 11-10-2018 dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 SMART SM00344 6 115 1.4E-45 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 SUPERFAMILY SSF54909 69 149 1.02E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 Pfam PF01037 Lrp/AsnC ligand binding domain 72 145 3.9E-22 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 8.4E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 8.4E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 8.4E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 Gene3D G3DSA:1.10.10.10 1 59 6.0E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 Gene3D G3DSA:3.30.70.920 60 143 6.0E-24 T 11-10-2018 dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 7.0E-21 T 11-10-2018 dqs_3198 6080bb6f62dfce5af7c50f54b21f03dd 155 SUPERFAMILY SSF46785 5 65 1.69E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1935 f9c3977629591ac90fef79cf13ffc3b3 182 Pfam PF01569 PAP2 superfamily 71 178 5.0E-23 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase dqs_1935 f9c3977629591ac90fef79cf13ffc3b3 182 SMART SM00014 64 175 1.8E-17 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase dqs_1935 f9c3977629591ac90fef79cf13ffc3b3 182 Gene3D G3DSA:1.20.144.10 69 176 7.5E-18 T 11-10-2018 dqs_1935 f9c3977629591ac90fef79cf13ffc3b3 182 SUPERFAMILY SSF48317 12 180 3.92E-36 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 SUPERFAMILY SSF51161 250 433 6.03E-51 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 Gene3D G3DSA:2.160.10.10 224 452 5.8E-67 T 11-10-2018 dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 Gene3D G3DSA:3.90.550.10 1 223 1.1E-62 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 Pfam PF12804 MobA-like NTP transferase domain 3 139 1.5E-24 T 11-10-2018 IPR025877 MobA-like NTP transferase dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 1 450 8.6E-188 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 448 41.533 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 SUPERFAMILY SSF53448 1 248 7.8E-65 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 262 295 3.3E-6 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 391 425 3.8E-7 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_3782 bb08dc5c08b4cc9d81dc79e2a049567c 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 347 2.2E-5 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2990 964a238d1a38c85405305ce28fa54450 427 Gene3D G3DSA:3.20.20.190 77 421 1.5E-40 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 dqs_2990 964a238d1a38c85405305ce28fa54450 427 SUPERFAMILY SSF51695 81 421 1.15E-62 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 dqs_2990 964a238d1a38c85405305ce28fa54450 427 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 83 415 3.2E-20 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 dqs_1323 b642acc4206a39ec531cbf8b8b9b885c 258 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 6 258 41.891 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 dqs_1323 b642acc4206a39ec531cbf8b8b9b885c 258 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 9 258 4.8E-95 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 dqs_1323 b642acc4206a39ec531cbf8b8b9b885c 258 Pfam PF00753 Metallo-beta-lactamase superfamily 18 170 6.8E-19 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_1323 b642acc4206a39ec531cbf8b8b9b885c 258 SMART SM00849 16 170 1.4E-32 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_1323 b642acc4206a39ec531cbf8b8b9b885c 258 Gene3D G3DSA:3.60.15.10 4 258 4.4E-81 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1323 b642acc4206a39ec531cbf8b8b9b885c 258 SUPERFAMILY SSF56281 6 258 2.57E-64 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1323 b642acc4206a39ec531cbf8b8b9b885c 258 PIRSF PIRSF005457 1 258 1.3E-93 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 dqs_1323 b642acc4206a39ec531cbf8b8b9b885c 258 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 171 258 1.6E-25 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 PIRSF PIRSF000429 1 396 3.5E-113 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 Pfam PF02803 Thiolase, C-terminal domain 274 394 4.8E-44 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 394 5.4E-128 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 SUPERFAMILY SSF53901 275 394 6.63E-44 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 Pfam PF00108 Thiolase, N-terminal domain 5 266 5.2E-86 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 Gene3D G3DSA:3.40.47.10 7 279 8.3E-143 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 Gene3D G3DSA:3.40.47.10 127 393 8.3E-143 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 ProSitePatterns PS00099 Thiolases active site. 377 390 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 dqs_0404 ed48f77dbebc42b28d6cdcd7288c6fbb 403 SUPERFAMILY SSF53901 5 273 5.26E-79 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2773 905c0f3a62f0fae8419bef9e25b25bf0 311 SMART SM00267 154 310 1.7E-32 T 11-10-2018 IPR000160 GGDEF domain dqs_2773 905c0f3a62f0fae8419bef9e25b25bf0 311 Gene3D G3DSA:3.30.70.270 157 311 5.0E-38 T 11-10-2018 dqs_2773 905c0f3a62f0fae8419bef9e25b25bf0 311 Pfam PF00990 Diguanylate cyclase, GGDEF domain 165 308 8.8E-27 T 11-10-2018 IPR000160 GGDEF domain dqs_2773 905c0f3a62f0fae8419bef9e25b25bf0 311 Gene3D G3DSA:3.30.450.40 5 156 1.3E-7 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_2773 905c0f3a62f0fae8419bef9e25b25bf0 311 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 161 308 4.6E-29 T 11-10-2018 IPR000160 GGDEF domain dqs_2773 905c0f3a62f0fae8419bef9e25b25bf0 311 SUPERFAMILY SSF55781 8 152 2.14E-16 T 11-10-2018 dqs_2773 905c0f3a62f0fae8419bef9e25b25bf0 311 SUPERFAMILY SSF55073 170 308 2.59E-33 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2773 905c0f3a62f0fae8419bef9e25b25bf0 311 SMART SM00065 8 155 3.0E-10 T 11-10-2018 IPR003018 GAF domain GO:0005515 dqs_0277 a6a2afa077ca9cd7ca279727f42c1979 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 215 2.1E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0277 a6a2afa077ca9cd7ca279727f42c1979 218 SMART SM00862 145 216 4.6E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0277 a6a2afa077ca9cd7ca279727f42c1979 218 SMART SM00448 1 112 1.3E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0277 a6a2afa077ca9cd7ca279727f42c1979 218 Gene3D G3DSA:1.10.10.10 123 218 8.3E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0277 a6a2afa077ca9cd7ca279727f42c1979 218 Gene3D G3DSA:3.40.50.2300 1 122 1.4E-38 T 11-10-2018 dqs_0277 a6a2afa077ca9cd7ca279727f42c1979 218 SUPERFAMILY SSF52172 1 179 2.72E-35 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0277 a6a2afa077ca9cd7ca279727f42c1979 218 Pfam PF00072 Response regulator receiver domain 3 112 3.1E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2484 f88ee3262eb9b86a77093d89ef0e7a5c 354 PIRSF PIRSF005508 2 354 1.8E-116 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 dqs_2484 f88ee3262eb9b86a77093d89ef0e7a5c 354 Pfam PF01758 Sodium Bile acid symporter family 62 255 2.5E-34 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 dqs_2484 f88ee3262eb9b86a77093d89ef0e7a5c 354 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 16 343 7.8E-119 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 dqs_2484 f88ee3262eb9b86a77093d89ef0e7a5c 354 Gene3D G3DSA:1.20.1530.20 13 345 1.3E-16 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 SUPERFAMILY SSF52313 5 230 3.27E-93 T 11-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 Pfam PF00318 Ribosomal protein S2 8 223 1.8E-92 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 2 225 7.8E-100 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 1 224 40.912 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 PRINTS PR00395 Ribosomal protein S2 signature 5 23 6.5E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 PRINTS PR00395 Ribosomal protein S2 signature 195 209 6.5E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 PRINTS PR00395 Ribosomal protein S2 signature 174 185 6.5E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 PRINTS PR00395 Ribosomal protein S2 signature 36 45 6.5E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 PRINTS PR00395 Ribosomal protein S2 signature 157 174 6.5E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 PRINTS PR00395 Ribosomal protein S2 signature 86 103 6.5E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 5 16 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 dqs_2064 83e27f2d63f6b19384c1a1e042cdf699 251 Gene3D G3DSA:1.10.287.610 99 150 1.2E-22 T 11-10-2018 dqs_1451 1570334050cd17e77b42c49dfbd41edf 326 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 321 3.6E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_1451 1570334050cd17e77b42c49dfbd41edf 326 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 75 142 2.8E-14 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 dqs_1451 1570334050cd17e77b42c49dfbd41edf 326 SUPERFAMILY SSF161098 78 322 2.22E-40 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1451 1570334050cd17e77b42c49dfbd41edf 326 Gene3D G3DSA:1.10.3720.10 66 323 1.8E-49 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 Gene3D G3DSA:3.40.50.300 172 345 2.1E-47 T 11-10-2018 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 177 341 1.1E-27 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 160 5.7E-21 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 353 432 7.7E-25 T 11-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 SUPERFAMILY SSF52540 3 166 1.4E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 Pfam PF01926 50S ribosome-binding GTPase 5 120 1.2E-25 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 Pfam PF01926 50S ribosome-binding GTPase 178 296 2.6E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 Gene3D G3DSA:3.30.300.20 352 434 6.0E-20 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 PIRSF PIRSF006485 1 440 8.2E-170 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 Hamap MF_00195 GTPase Der [der]. 2 435 37.075 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 SMART SM00382 1 142 5.0 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 SMART SM00382 175 316 1.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 SUPERFAMILY SSF52540 138 438 1.08E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 73 91 7.6E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 7.6E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 432 3.3E-169 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 dqs_1003 823dd97ed1a36ca2025a40c9974fb3d7 442 Gene3D G3DSA:3.40.50.300 1 161 1.3E-42 T 11-10-2018 dqs_0644 a3b12223941cad223f15b08d34f55343 241 Pfam PF01709 Transcriptional regulator 5 236 2.9E-96 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_0644 a3b12223941cad223f15b08d34f55343 241 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 236 8.1E-94 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_0644 a3b12223941cad223f15b08d34f55343 241 SUPERFAMILY SSF75625 3 239 3.14E-96 T 11-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_0644 a3b12223941cad223f15b08d34f55343 241 Gene3D G3DSA:1.10.10.200 1 80 2.4E-37 T 11-10-2018 IPR017856 Integrase-like, N-terminal dqs_0644 a3b12223941cad223f15b08d34f55343 241 Gene3D G3DSA:3.30.70.980 86 235 7.2E-51 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_0644 a3b12223941cad223f15b08d34f55343 241 Gene3D G3DSA:3.30.70.980 130 205 7.2E-51 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_0644 a3b12223941cad223f15b08d34f55343 241 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 35.829 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2160 a63eac276a6ddb769f08f55f93a9fc58 273 Gene3D G3DSA:2.160.10.10 87 257 8.0E-56 T 11-10-2018 dqs_2160 a63eac276a6ddb769f08f55f93a9fc58 273 Gene3D G3DSA:1.10.166.10 1 70 3.7E-30 T 11-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 dqs_2160 a63eac276a6ddb769f08f55f93a9fc58 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 272 6.1E-144 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 dqs_2160 a63eac276a6ddb769f08f55f93a9fc58 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 dqs_2160 a63eac276a6ddb769f08f55f93a9fc58 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 2.4E-26 T 11-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 dqs_2160 a63eac276a6ddb769f08f55f93a9fc58 273 SUPERFAMILY SSF51161 1 256 3.05E-74 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_2160 a63eac276a6ddb769f08f55f93a9fc58 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 2.3E-12 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2160 a63eac276a6ddb769f08f55f93a9fc58 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 56.317 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 dqs_2265 d6c655562087213304b8cefc9436b79d 223 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 36 218 28.647 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 dqs_2265 d6c655562087213304b8cefc9436b79d 223 Gene3D G3DSA:3.30.1130.10 88 221 5.9E-36 T 11-10-2018 dqs_2265 d6c655562087213304b8cefc9436b79d 223 SUPERFAMILY SSF55620 18 218 4.89E-56 T 11-10-2018 dqs_2265 d6c655562087213304b8cefc9436b79d 223 Pfam PF01227 GTP cyclohydrolase I 41 217 3.7E-48 T 11-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 dqs_2265 d6c655562087213304b8cefc9436b79d 223 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 97 113 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 dqs_0438 0916aed0ab166fcec0068b3740c47ae6 134 Pfam PF01479 S4 domain 14 58 1.5E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0438 0916aed0ab166fcec0068b3740c47ae6 134 SUPERFAMILY SSF55174 12 109 5.5E-26 T 11-10-2018 dqs_0438 0916aed0ab166fcec0068b3740c47ae6 134 PIRSF PIRSF016821 10 134 3.9E-41 T 11-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 dqs_0438 0916aed0ab166fcec0068b3740c47ae6 134 Gene3D G3DSA:3.10.290.10 7 111 1.6E-35 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_0438 0916aed0ab166fcec0068b3740c47ae6 134 SMART SM00363 13 75 0.0019 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3943 a2f0b95fbf8fbed99e063f45b324585b 564 Gene3D G3DSA:3.40.50.300 330 506 7.3E-28 T 11-10-2018 dqs_3943 a2f0b95fbf8fbed99e063f45b324585b 564 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 366 481 2.2E-15 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_3943 a2f0b95fbf8fbed99e063f45b324585b 564 SUPERFAMILY SSF52540 328 538 6.74E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3943 a2f0b95fbf8fbed99e063f45b324585b 564 SMART SM00382 362 488 0.0027 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1914 7b86bd0d32555f67584c17d689a046d1 112 SMART SM00749 48 111 3.1E-8 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria dqs_1914 7b86bd0d32555f67584c17d689a046d1 112 Pfam PF04972 BON domain 43 110 1.8E-16 T 11-10-2018 IPR007055 BON domain dqs_1204 c191f82e5632850720f548c6c166408d 305 SMART SM00382 33 174 0.0028 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1204 c191f82e5632850720f548c6c166408d 305 SUPERFAMILY SSF52540 17 280 2.59E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1204 c191f82e5632850720f548c6c166408d 305 PIRSF PIRSF002849 2 305 3.6E-116 T 11-10-2018 dqs_1204 c191f82e5632850720f548c6c166408d 305 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 36 166 3.9E-63 T 11-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 dqs_1204 c191f82e5632850720f548c6c166408d 305 Gene3D G3DSA:3.40.50.300 17 182 4.2E-44 T 11-10-2018 dqs_1204 c191f82e5632850720f548c6c166408d 305 Gene3D G3DSA:1.10.8.300 197 302 5.3E-23 T 11-10-2018 dqs_0906 600ae8a3c6593e1a007dda5759ff0a08 382 Pfam PF00529 HlyD membrane-fusion protein of T1SS 19 361 7.1E-7 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_0906 600ae8a3c6593e1a007dda5759ff0a08 382 SUPERFAMILY SSF111369 50 299 1.44E-15 T 11-10-2018 dqs_0906 600ae8a3c6593e1a007dda5759ff0a08 382 Gene3D G3DSA:2.40.30.170 50 305 4.4E-71 T 11-10-2018 dqs_0906 600ae8a3c6593e1a007dda5759ff0a08 382 Gene3D G3DSA:1.10.287.470 92 183 4.4E-71 T 11-10-2018 dqs_0906 600ae8a3c6593e1a007dda5759ff0a08 382 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 363 8.7E-49 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_0906 600ae8a3c6593e1a007dda5759ff0a08 382 Gene3D G3DSA:2.40.420.20 306 361 4.4E-71 T 11-10-2018 dqs_0906 600ae8a3c6593e1a007dda5759ff0a08 382 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 288 2.1E-18 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_0906 600ae8a3c6593e1a007dda5759ff0a08 382 Gene3D G3DSA:2.40.50.100 58 224 4.4E-71 T 11-10-2018 dqs_4102 9389c64d34d696749a32f5264f88d212 151 SUPERFAMILY SSF46955 5 118 1.87E-30 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_4102 9389c64d34d696749a32f5264f88d212 151 SMART SM00422 5 74 1.9E-21 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_4102 9389c64d34d696749a32f5264f88d212 151 Pfam PF00376 MerR family regulatory protein 6 43 1.7E-15 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_4102 9389c64d34d696749a32f5264f88d212 151 Pfam PF09278 MerR, DNA binding 49 111 9.0E-6 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding dqs_4102 9389c64d34d696749a32f5264f88d212 151 Gene3D G3DSA:1.10.1660.10 4 136 5.9E-32 T 11-10-2018 dqs_0372 2b35f41da334038c3a112e0c566cf558 328 SMART SM00382 44 226 7.3E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0372 2b35f41da334038c3a112e0c566cf558 328 Pfam PF00005 ABC transporter 36 178 5.5E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0372 2b35f41da334038c3a112e0c566cf558 328 Gene3D G3DSA:3.40.50.300 14 253 4.2E-69 T 11-10-2018 dqs_0372 2b35f41da334038c3a112e0c566cf558 328 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0372 2b35f41da334038c3a112e0c566cf558 328 SUPERFAMILY SSF52540 20 240 3.41E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2212 ba86817cf3579fa518a9109b9ffcd51f 126 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 14 121 3.5E-30 T 11-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein dqs_2212 ba86817cf3579fa518a9109b9ffcd51f 126 Gene3D G3DSA:3.40.1230.10 1 124 5.1E-37 T 11-10-2018 IPR036748 MTH938-like superfamily dqs_2212 ba86817cf3579fa518a9109b9ffcd51f 126 SUPERFAMILY SSF64076 1 122 2.22E-37 T 11-10-2018 IPR036748 MTH938-like superfamily dqs_2553 450d32fe5eafeb1270ffeb85af07274f 686 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 585 605 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site dqs_2553 450d32fe5eafeb1270ffeb85af07274f 686 Gene3D G3DSA:1.20.1730.10 342 669 2.6E-27 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily dqs_2553 450d32fe5eafeb1270ffeb85af07274f 686 Gene3D G3DSA:1.20.1730.10 56 266 1.0E-33 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily dqs_2553 450d32fe5eafeb1270ffeb85af07274f 686 Pfam PF00474 Sodium:solute symporter family 488 603 1.1E-22 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 dqs_2553 450d32fe5eafeb1270ffeb85af07274f 686 Pfam PF00474 Sodium:solute symporter family 68 238 2.0E-31 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 dqs_2553 450d32fe5eafeb1270ffeb85af07274f 686 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 44 670 6.9E-231 T 11-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 ProSitePatterns PS00057 Ribosomal protein S18 signature. 37 60 - T 11-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 Pfam PF01084 Ribosomal protein S18 33 84 8.5E-24 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 37 86 1.0E-21 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 18 89 20.248 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 PRINTS PR00974 Ribosomal protein S18 family signature 54 61 1.4E-15 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 PRINTS PR00974 Ribosomal protein S18 family signature 76 86 1.4E-15 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 PRINTS PR00974 Ribosomal protein S18 family signature 44 54 1.4E-15 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 PRINTS PR00974 Ribosomal protein S18 family signature 62 76 1.4E-15 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 Gene3D G3DSA:4.10.640.10 4 90 4.8E-26 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 SUPERFAMILY SSF46911 16 87 5.75E-27 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0789 dc3251612841a6a6e355179f6eb62a42 91 TIGRFAM TIGR00165 S18: ribosomal protein bS18 21 88 9.9E-34 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0257 319e33d482b186ebfd9c4983054613d1 214 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 85 196 3.7E-12 T 11-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal dqs_0257 319e33d482b186ebfd9c4983054613d1 214 Gene3D G3DSA:1.10.357.10 7 206 2.4E-39 T 11-10-2018 dqs_0257 319e33d482b186ebfd9c4983054613d1 214 SUPERFAMILY SSF46689 11 82 1.13E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0257 319e33d482b186ebfd9c4983054613d1 214 SUPERFAMILY SSF48498 83 198 8.9E-11 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_0257 319e33d482b186ebfd9c4983054613d1 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 2.4E-17 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0257 319e33d482b186ebfd9c4983054613d1 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 3.7E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0257 319e33d482b186ebfd9c4983054613d1 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 3.7E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_1071 683a77960303186ff3b5239bc649a27d 1116 SUPERFAMILY SSF53335 79 602 4.37E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3696 3c818c9fd3c5e13f426e00266c71bde5 265 SMART SM00382 38 225 6.5E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3696 3c818c9fd3c5e13f426e00266c71bde5 265 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3696 3c818c9fd3c5e13f426e00266c71bde5 265 SUPERFAMILY SSF52540 12 238 4.18E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3696 3c818c9fd3c5e13f426e00266c71bde5 265 Gene3D G3DSA:3.40.50.300 13 257 1.7E-60 T 11-10-2018 dqs_3696 3c818c9fd3c5e13f426e00266c71bde5 265 Pfam PF00005 ABC transporter 32 178 1.4E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1249 dbdc05ac152c666e45592b446094ff9f 399 Gene3D G3DSA:3.40.50.10300 186 397 1.0E-70 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 dqs_1249 dbdc05ac152c666e45592b446094ff9f 399 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 364 8.4E-64 T 11-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 dqs_1249 dbdc05ac152c666e45592b446094ff9f 399 Pfam PF02441 Flavoprotein 7 176 2.8E-41 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 dqs_1249 dbdc05ac152c666e45592b446094ff9f 399 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 389 1.0E-126 T 11-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 dqs_1249 dbdc05ac152c666e45592b446094ff9f 399 SUPERFAMILY SSF102645 184 393 7.06E-72 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 dqs_1249 dbdc05ac152c666e45592b446094ff9f 399 Gene3D G3DSA:3.40.50.1950 1 185 1.3E-58 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 dqs_1249 dbdc05ac152c666e45592b446094ff9f 399 SUPERFAMILY SSF52507 2 178 1.18E-59 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 dqs_0301 6d5ecfe6c9644d3b94cb09606e4b20e4 75 SUPERFAMILY SSF143120 1 41 6.02E-10 T 11-10-2018 IPR036165 YefM-like superfamily dqs_0301 6d5ecfe6c9644d3b94cb09606e4b20e4 75 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 41 8.6E-13 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM dqs_0301 6d5ecfe6c9644d3b94cb09606e4b20e4 75 Gene3D G3DSA:3.40.1620.10 1 39 1.0E-11 T 11-10-2018 dqs_0301 6d5ecfe6c9644d3b94cb09606e4b20e4 75 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 39 2.3E-6 T 11-10-2018 dqs_3105 75605212872cc205a0feefda42c54ab2 215 SUPERFAMILY SSF46894 140 208 2.69E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_3105 75605212872cc205a0feefda42c54ab2 215 SMART SM00421 144 201 2.8E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3105 75605212872cc205a0feefda42c54ab2 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 3.1E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3105 75605212872cc205a0feefda42c54ab2 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 3.1E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3105 75605212872cc205a0feefda42c54ab2 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 3.1E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3105 75605212872cc205a0feefda42c54ab2 215 SMART SM00448 2 115 5.3E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3105 75605212872cc205a0feefda42c54ab2 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 1.5E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3105 75605212872cc205a0feefda42c54ab2 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3105 75605212872cc205a0feefda42c54ab2 215 Gene3D G3DSA:3.40.50.12740 2 207 1.1E-57 T 11-10-2018 dqs_3105 75605212872cc205a0feefda42c54ab2 215 Pfam PF00072 Response regulator receiver domain 4 116 9.4E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3105 75605212872cc205a0feefda42c54ab2 215 SUPERFAMILY SSF52172 1 131 1.29E-29 T 11-10-2018 IPR011006 CheY-like superfamily dqs_4017 638c51bff673d975d7c2450bb9a59ff1 524 Pfam PF05199 GMC oxidoreductase 392 510 6.5E-18 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 dqs_4017 638c51bff673d975d7c2450bb9a59ff1 524 Gene3D G3DSA:3.50.50.60 209 315 1.8E-5 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4017 638c51bff673d975d7c2450bb9a59ff1 524 Gene3D G3DSA:3.50.50.60 12 192 9.4E-18 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4017 638c51bff673d975d7c2450bb9a59ff1 524 SUPERFAMILY SSF51905 13 520 5.83E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4017 638c51bff673d975d7c2450bb9a59ff1 524 Gene3D G3DSA:3.50.50.60 428 523 8.0E-15 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_4017 638c51bff673d975d7c2450bb9a59ff1 524 Pfam PF00732 GMC oxidoreductase 14 306 1.4E-19 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 dqs_4017 638c51bff673d975d7c2450bb9a59ff1 524 SUPERFAMILY SSF54373 337 460 5.1E-14 T 11-10-2018 dqs_0619 1ad648da186bfc3b6531a3b81580dada 412 Pfam PF04233 Phage Mu protein F like protein 57 183 5.3E-15 T 11-10-2018 IPR006528 Phage head morphogenesis domain dqs_0619 1ad648da186bfc3b6531a3b81580dada 412 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 357 372 - T 11-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 dqs_1421 9db2df0f62da25dc9c3e8f06a99c79ea 199 SUPERFAMILY SSF55166 66 193 6.8E-26 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 dqs_1421 9db2df0f62da25dc9c3e8f06a99c79ea 199 Gene3D G3DSA:3.30.1380.10 65 190 9.9E-25 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 dqs_1421 9db2df0f62da25dc9c3e8f06a99c79ea 199 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 127 190 3.6E-12 T 11-10-2018 IPR039561 Peptidase M15C GO:0008233 dqs_3703 ac21246df8056515f0994968eb861b20 348 Gene3D G3DSA:3.40.50.10210 51 327 1.3E-126 T 11-10-2018 dqs_3703 ac21246df8056515f0994968eb861b20 348 Gene3D G3DSA:1.10.1610.10 19 344 1.3E-126 T 11-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 dqs_3703 ac21246df8056515f0994968eb861b20 348 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 9 344 2.2E-136 T 11-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 dqs_3703 ac21246df8056515f0994968eb861b20 348 SUPERFAMILY SSF52733 4 346 3.66E-116 T 11-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 dqs_3703 ac21246df8056515f0994968eb861b20 348 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 7 346 34.655 T 11-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 dqs_3703 ac21246df8056515f0994968eb861b20 348 Pfam PF02277 Phosphoribosyltransferase 7 344 7.3E-130 T 11-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 SUPERFAMILY SSF81296 310 389 7.0E-19 T 11-10-2018 IPR014756 Immunoglobulin E-set dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 Pfam PF09098 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding 29 193 5.1E-86 T 11-10-2018 IPR015182 Quinohemoprotein amine dehydrogenase, alpha subunit, haem binding domain dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 SUPERFAMILY SSF46626 29 108 3.81E-14 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 Pfam PF09099 Quinohemoprotein amine dehydrogenase, alpha subunit domain III 311 389 7.4E-29 T 11-10-2018 IPR015183 Quinohemoprotein amine dehydrogenase, alpha subunit domain III dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 Gene3D G3DSA:1.10.760.10 29 92 3.7E-6 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 SUPERFAMILY SSF69298 189 305 1.83E-39 T 11-10-2018 IPR036718 Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 superfamily dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 Pfam PF14930 Quinohemoprotein amine dehydrogenase, alpha subunit domain II 202 305 1.6E-38 T 11-10-2018 IPR009111 Quinohemoprotein amine dehydrogenase, alpha subunit, domain 2 dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 Gene3D G3DSA:2.60.40.10 389 520 1.5E-46 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 SUPERFAMILY SSF46626 114 190 2.35E-32 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 TIGRFAM TIGR03908 QH_alpha: quinohemoprotein amine dehydrogenase, alpha subunit 23 527 2.2E-236 T 11-10-2018 IPR023887 Quinohemoprotein amine dehydrogenase, alpha subunit dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 SUPERFAMILY SSF81296 390 528 2.73E-56 T 11-10-2018 IPR014756 Immunoglobulin E-set dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 Gene3D G3DSA:2.40.128.120 199 307 8.2E-32 T 11-10-2018 IPR036718 Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 superfamily dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 Pfam PF09100 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV 394 527 1.8E-56 T 11-10-2018 IPR015184 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV dqs_1354 94d23eb9627c77ed054d40f0332b8868 528 Gene3D G3DSA:2.60.40.10 311 388 4.4E-26 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_3544 daca56ea94ba3441663fd5315893264c 179 PIRSF PIRSF002161 1 179 8.0E-64 T 11-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3544 daca56ea94ba3441663fd5315893264c 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 11-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3544 daca56ea94ba3441663fd5315893264c 179 SUPERFAMILY SSF55282 3 179 3.3E-78 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3544 daca56ea94ba3441663fd5315893264c 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.265 T 11-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3544 daca56ea94ba3441663fd5315893264c 179 Gene3D G3DSA:3.30.1440.10 1 179 2.6E-79 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3544 daca56ea94ba3441663fd5315893264c 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.4E-39 T 11-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3544 daca56ea94ba3441663fd5315893264c 179 Pfam PF00281 Ribosomal protein L5 24 80 7.8E-28 T 11-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0494 e6176b2cd48070d8f0d5d5ba9177ecbc 144 Pfam PF07769 psiF repeat 25 57 1.3E-17 T 11-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat dqs_0494 e6176b2cd48070d8f0d5d5ba9177ecbc 144 Pfam PF07769 psiF repeat 112 143 4.6E-18 T 11-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 Gene3D G3DSA:3.50.50.60 115 241 1.6E-89 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 283 6.8E-52 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 7.2E-12 T 11-10-2018 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 7.2E-12 T 11-10-2018 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 7.2E-12 T 11-10-2018 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 282 7.2E-12 T 11-10-2018 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 Gene3D G3DSA:3.30.390.30 319 391 5.5E-8 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 SUPERFAMILY SSF51905 2 193 4.32E-43 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 Gene3D G3DSA:3.50.50.60 7 291 1.6E-89 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 SUPERFAMILY SSF51905 143 312 3.31E-29 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 5.5E-18 T 11-10-2018 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.5E-18 T 11-10-2018 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 5.5E-18 T 11-10-2018 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 5.5E-18 T 11-10-2018 dqs_1020 7387f20901eec5d753717cef22bd7fe5 415 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 5.5E-18 T 11-10-2018 dqs_0963 56a181aef3ee103611344cfec00950a3 142 Pfam PF05258 Protein of unknown function (DUF721) 14 89 3.3E-13 T 11-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 dqs_0409 a0907b230d7c3d75d00b13dfda7921eb 305 Pfam PF00753 Metallo-beta-lactamase superfamily 15 204 8.2E-21 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_0409 a0907b230d7c3d75d00b13dfda7921eb 305 SUPERFAMILY SSF56281 16 225 2.57E-39 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0409 a0907b230d7c3d75d00b13dfda7921eb 305 Gene3D G3DSA:3.60.15.10 9 231 1.2E-34 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0409 a0907b230d7c3d75d00b13dfda7921eb 305 ProSitePatterns PS00743 Beta-lactamases class B signature 1. 62 82 - T 11-10-2018 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 dqs_0409 a0907b230d7c3d75d00b13dfda7921eb 305 SMART SM00849 19 204 1.4E-25 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3620 87a5c224899353e949e3fae70d88ddec 387 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 196 207 - T 11-10-2018 IPR000241 Putative RNA methylase domain dqs_3620 87a5c224899353e949e3fae70d88ddec 387 Gene3D G3DSA:3.30.2130.30 6 252 1.6E-129 T 11-10-2018 dqs_3620 87a5c224899353e949e3fae70d88ddec 387 Gene3D G3DSA:3.40.50.150 170 366 1.6E-129 T 11-10-2018 dqs_3620 87a5c224899353e949e3fae70d88ddec 387 Pfam PF01170 Putative RNA methylase family UPF0020 163 368 5.9E-51 T 11-10-2018 IPR000241 Putative RNA methylase domain dqs_3620 87a5c224899353e949e3fae70d88ddec 387 SUPERFAMILY SSF53335 147 369 1.7E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3620 87a5c224899353e949e3fae70d88ddec 387 Pfam PF02926 THUMP domain 33 155 1.1E-10 T 11-10-2018 IPR004114 THUMP domain GO:0003723 dqs_3620 87a5c224899353e949e3fae70d88ddec 387 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 300 306 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 dqs_3620 87a5c224899353e949e3fae70d88ddec 387 SMART SM00981 57 155 1.3E-19 T 11-10-2018 IPR004114 THUMP domain GO:0003723 dqs_1754 3c52659335c93cc6860c6040727d7941 529 Pfam PF02910 Fumarate reductase flavoprotein C-term 433 515 3.1E-13 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1754 3c52659335c93cc6860c6040727d7941 529 Pfam PF00890 FAD binding domain 6 385 6.4E-103 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1754 3c52659335c93cc6860c6040727d7941 529 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 4 511 1.5E-199 T 11-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 dqs_1754 3c52659335c93cc6860c6040727d7941 529 Gene3D G3DSA:3.90.700.10 241 351 1.2E-159 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1754 3c52659335c93cc6860c6040727d7941 529 Gene3D G3DSA:1.20.58.100 416 528 4.3E-41 T 11-10-2018 dqs_1754 3c52659335c93cc6860c6040727d7941 529 SUPERFAMILY SSF46977 416 516 3.53E-30 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1754 3c52659335c93cc6860c6040727d7941 529 Gene3D G3DSA:3.50.50.60 6 397 1.2E-159 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1754 3c52659335c93cc6860c6040727d7941 529 SUPERFAMILY SSF51905 4 439 5.47E-73 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1754 3c52659335c93cc6860c6040727d7941 529 SUPERFAMILY SSF56425 231 346 2.09E-43 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1754 3c52659335c93cc6860c6040727d7941 529 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 348 370 2.2E-8 T 11-10-2018 dqs_1754 3c52659335c93cc6860c6040727d7941 529 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.2E-8 T 11-10-2018 dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 SUPERFAMILY SSF46785 4 86 5.23E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 11 74 1.8E-4 T 11-10-2018 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 3 331 27.811 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 PIRSF PIRSF005485 1 342 6.7E-114 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 Gene3D G3DSA:1.10.10.10 1 86 5.5E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 Pfam PF01628 HrcA protein C terminal domain 105 324 5.0E-61 T 11-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 Gene3D G3DSA:3.30.390.60 128 228 3.7E-47 T 11-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 SUPERFAMILY SSF55781 73 340 4.71E-63 T 11-10-2018 dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 6 337 2.2E-100 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 dqs_2742 5cdce780c5ffcace82de13d12f70a6bf 342 Gene3D G3DSA:3.30.450.40 105 337 3.7E-47 T 11-10-2018 IPR029016 GAF-like domain superfamily dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 3.9E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 SMART SM00345 15 73 5.0E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 Gene3D G3DSA:1.20.120.530 76 215 3.8E-34 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 SUPERFAMILY SSF48008 80 212 2.3E-30 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 Pfam PF07729 FCD domain 83 206 4.1E-31 T 11-10-2018 IPR011711 GntR, C-terminal dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 Gene3D G3DSA:1.10.10.10 9 75 3.8E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 SMART SM00895 83 207 1.9E-23 T 11-10-2018 IPR011711 GntR, C-terminal dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 SUPERFAMILY SSF46785 6 77 2.09E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 3.1E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_0753 b61da80f0ea367ac839a2edbb84d5935 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 3.1E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_3975 10c67469a18f436bcf021a5e6401e075 213 SMART SM00849 13 193 8.8E-35 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3975 10c67469a18f436bcf021a5e6401e075 213 SUPERFAMILY SSF56281 2 209 7.08E-57 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3975 10c67469a18f436bcf021a5e6401e075 213 Gene3D G3DSA:3.60.15.10 2 211 2.6E-79 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3975 10c67469a18f436bcf021a5e6401e075 213 Pfam PF00753 Metallo-beta-lactamase superfamily 14 193 4.8E-29 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 Gene3D G3DSA:3.40.50.80 100 254 1.1E-41 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 SUPERFAMILY SSF63380 4 99 5.73E-27 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 Pfam PF00175 Oxidoreductase NAD-binding domain 114 228 7.3E-7 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 Gene3D G3DSA:2.40.30.10 1 97 9.7E-31 T 11-10-2018 dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 SUPERFAMILY SSF52343 103 256 1.83E-40 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 Pfam PF00970 Oxidoreductase FAD-binding domain 16 97 1.2E-8 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 5.6E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 5.6E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 145 5.6E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_2803 c75760d8da5051f9273d0b1ee506c024 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 5.6E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1931 dc45733190b6bed960323cf86a030054 280 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 27 242 2.9E-9 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase dqs_1931 dc45733190b6bed960323cf86a030054 280 SUPERFAMILY SSF56219 20 252 6.15E-38 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_1931 dc45733190b6bed960323cf86a030054 280 Gene3D G3DSA:3.60.10.10 22 250 5.6E-42 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_3149 f1c23b0f70709655e52e9bfb05f80bf7 447 PIRSF PIRSF006429 5 446 7.2E-150 T 11-10-2018 IPR024188 Glutamate synthase large subunit-like protein dqs_3149 f1c23b0f70709655e52e9bfb05f80bf7 447 Pfam PF01645 Conserved region in glutamate synthase 86 338 1.2E-78 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 dqs_3149 f1c23b0f70709655e52e9bfb05f80bf7 447 Pfam PF01645 Conserved region in glutamate synthase 362 409 1.1E-4 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 dqs_3149 f1c23b0f70709655e52e9bfb05f80bf7 447 SUPERFAMILY SSF51395 25 429 1.83E-89 T 11-10-2018 dqs_3149 f1c23b0f70709655e52e9bfb05f80bf7 447 Gene3D G3DSA:3.20.20.70 74 437 1.8E-99 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3149 f1c23b0f70709655e52e9bfb05f80bf7 447 PIRSF PIRSF500061 3 447 6.3E-169 T 11-10-2018 dqs_2573 b4618029f49ae5687799f0f12464b45b 63 SUPERFAMILY SSF55331 2 61 4.06E-20 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_2573 b4618029f49ae5687799f0f12464b45b 63 Pfam PF01361 Tautomerase enzyme 2 59 3.1E-23 T 11-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 dqs_2573 b4618029f49ae5687799f0f12464b45b 63 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 61 2.4E-22 T 11-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 dqs_2573 b4618029f49ae5687799f0f12464b45b 63 Gene3D G3DSA:3.30.429.10 1 63 2.9E-25 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_3584 733f4f3b8ca7e23b2a625a36d59ca32e 410 Gene3D G3DSA:3.40.50.12780 2 314 5.0E-68 T 11-10-2018 dqs_3584 733f4f3b8ca7e23b2a625a36d59ca32e 410 SUPERFAMILY SSF56801 109 380 8.5E-31 T 11-10-2018 dqs_3584 733f4f3b8ca7e23b2a625a36d59ca32e 410 Pfam PF00501 AMP-binding enzyme 119 275 2.0E-8 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_3584 733f4f3b8ca7e23b2a625a36d59ca32e 410 Gene3D G3DSA:3.30.300.30 315 409 2.9E-14 T 11-10-2018 dqs_2554 715fe42748b996cc8249602a4880bc40 734 Gene3D G3DSA:3.30.420.10 539 707 1.0E-48 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_2554 715fe42748b996cc8249602a4880bc40 734 Gene3D G3DSA:3.30.450.20 132 288 3.9E-6 T 11-10-2018 dqs_2554 715fe42748b996cc8249602a4880bc40 734 SUPERFAMILY SSF53098 539 719 1.56E-53 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_2554 715fe42748b996cc8249602a4880bc40 734 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 537 705 1.2E-32 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_2554 715fe42748b996cc8249602a4880bc40 734 Pfam PF00929 Exonuclease 546 702 6.7E-32 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_2554 715fe42748b996cc8249602a4880bc40 734 SMART SM00479 543 711 1.8E-47 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_0803 e2f8f786b591ade70054e54b05df5208 66 Pfam PF03884 DNA gyrase inhibitor YacG 9 57 7.9E-25 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 dqs_0803 e2f8f786b591ade70054e54b05df5208 66 Gene3D G3DSA:3.30.50.10 4 64 1.4E-23 T 11-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 dqs_0803 e2f8f786b591ade70054e54b05df5208 66 SUPERFAMILY SSF57716 6 60 1.23E-20 T 11-10-2018 dqs_0803 e2f8f786b591ade70054e54b05df5208 66 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 5 62 18.31 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 dqs_3448 7691744579b42a61b0bfb86c3789ec0e 243 Pfam PF07103 Protein of unknown function (DUF1365) 1 236 1.4E-62 T 11-10-2018 IPR010775 Protein of unknown function DUF1365 dqs_3375 a640a065ab36b8c67e34d27e9b4fee9a 208 Pfam PF04367 Protein of unknown function (DUF502) 57 161 4.0E-37 T 11-10-2018 IPR007462 Protein of unknown function DUF502 dqs_0942 317865187a0047a2ab0ba8b74217962e 137 Gene3D G3DSA:3.40.1350.10 26 137 2.2E-30 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 dqs_0942 317865187a0047a2ab0ba8b74217962e 137 Hamap MF_00048 UPF0102 protein YraN [yraN]. 20 132 21.653 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 dqs_0942 317865187a0047a2ab0ba8b74217962e 137 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 20 135 4.5E-25 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 dqs_0942 317865187a0047a2ab0ba8b74217962e 137 Pfam PF02021 Uncharacterised protein family UPF0102 27 118 2.6E-25 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 dqs_0942 317865187a0047a2ab0ba8b74217962e 137 SUPERFAMILY SSF52980 21 122 2.28E-18 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 dqs_3880 d8b2dc66ec37f70223b06662ba7ffc6a 374 SUPERFAMILY SSF53822 27 371 1.3E-96 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_3880 d8b2dc66ec37f70223b06662ba7ffc6a 374 Gene3D G3DSA:3.40.50.2300 28 350 2.6E-104 T 11-10-2018 dqs_3880 d8b2dc66ec37f70223b06662ba7ffc6a 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 49 65 1.1E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_3880 d8b2dc66ec37f70223b06662ba7ffc6a 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 335 350 1.1E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_3880 d8b2dc66ec37f70223b06662ba7ffc6a 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 27 43 1.1E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_3880 d8b2dc66ec37f70223b06662ba7ffc6a 374 Pfam PF13458 Periplasmic binding protein 27 356 2.6E-61 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_3880 d8b2dc66ec37f70223b06662ba7ffc6a 374 Gene3D G3DSA:3.40.50.2300 148 277 2.6E-104 T 11-10-2018 dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 Gene3D G3DSA:1.10.275.10 2 140 1.4E-57 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 Pfam PF00206 Lyase 12 343 2.4E-99 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 Gene3D G3DSA:1.10.40.30 409 460 2.9E-19 T 11-10-2018 dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 SUPERFAMILY SSF48557 4 458 3.61E-143 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 Pfam PF10415 Fumarase C C-terminus 409 461 8.7E-20 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 1.9E-30 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 PRINTS PR00149 Fumarate lyase superfamily signature 318 334 1.9E-30 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 PRINTS PR00149 Fumarate lyase superfamily signature 181 199 1.9E-30 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 PRINTS PR00149 Fumarate lyase superfamily signature 272 299 1.9E-30 T 11-10-2018 IPR000362 Fumarate lyase family dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 5 463 1.1E-207 T 11-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 Gene3D G3DSA:1.20.200.10 141 408 1.6E-111 T 11-10-2018 dqs_0448 50871755016662fb6527ecba4a4c8c6d 466 ProSitePatterns PS00163 Fumarate lyases signature. 318 327 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 373 400 1.3E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 13 1.3E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 402 431 1.3E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 170 5.9E-25 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 SUPERFAMILY SSF58104 228 537 4.32E-67 T 11-10-2018 dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 Gene3D G3DSA:1.10.287.950 207 537 6.6E-69 T 11-10-2018 dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 SMART SM00304 207 260 3.8E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 349 504 2.8E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0138 6bbf03dcd4b16d5c7e513eb7dbbc1f73 537 SMART SM00283 275 536 2.9E-62 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3307 1e444a7d9cf5e8b3e53872631e6f05f6 280 Pfam PF07589 PEP-CTERM motif 253 276 3.0E-5 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_3307 1e444a7d9cf5e8b3e53872631e6f05f6 280 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 254 278 1.4E-4 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 SUPERFAMILY SSF53955 191 242 4.87E-5 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 Pfam PF10135 Rod binding protein 52 99 1.2E-12 T 11-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 211 344 1.9E-19 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 SMART SM00047 195 353 2.6E-36 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 Gene3D G3DSA:1.10.530.10 205 344 1.7E-48 T 11-10-2018 dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 Gene3D G3DSA:2.10.70.40 239 291 1.7E-48 T 11-10-2018 dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 12 345 2.1E-93 T 11-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 PRINTS PR01002 Flagellar protein FlgJ signature 76 98 4.6E-11 T 11-10-2018 dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 PRINTS PR01002 Flagellar protein FlgJ signature 30 53 4.6E-11 T 11-10-2018 dqs_2867 5bac01453cf4fd1875ba8b4e47f6004e 355 PRINTS PR01002 Flagellar protein FlgJ signature 55 75 4.6E-11 T 11-10-2018 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 283 325 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 SMART SM00342 246 329 1.7E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 313 329 4.7E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 298 313 4.7E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 SUPERFAMILY SSF46689 282 333 1.03E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 Gene3D G3DSA:3.40.50.880 2 218 1.3E-45 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 SUPERFAMILY SSF46689 230 279 1.25E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 Pfam PF01965 DJ-1/PfpI family 52 152 5.5E-9 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 Gene3D G3DSA:1.10.10.60 280 333 1.1E-16 T 11-10-2018 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 Pfam PF12833 Helix-turn-helix domain 253 331 2.1E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 Gene3D G3DSA:1.10.10.60 222 279 2.5E-8 T 11-10-2018 dqs_3968 01e95e3ebbdb1a4df9e71ad425c21b34 345 SUPERFAMILY SSF52317 7 211 2.06E-31 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_0426 df0bc53ec73e7b2cd6a44bd9802c3204 239 Pfam PF16331 TolA binding protein trimerisation 38 105 5.6E-21 T 11-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 dqs_0426 df0bc53ec73e7b2cd6a44bd9802c3204 239 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 119 236 9.1E-36 T 11-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal dqs_0426 df0bc53ec73e7b2cd6a44bd9802c3204 239 Pfam PF13432 Tetratricopeptide repeat 123 190 1.3E-11 T 11-10-2018 dqs_0426 df0bc53ec73e7b2cd6a44bd9802c3204 239 SUPERFAMILY SSF48452 122 233 7.59E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0426 df0bc53ec73e7b2cd6a44bd9802c3204 239 Gene3D G3DSA:1.25.40.10 119 239 3.8E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0426 df0bc53ec73e7b2cd6a44bd9802c3204 239 Gene3D G3DSA:1.20.5.110 32 108 4.3E-6 T 11-10-2018 dqs_0426 df0bc53ec73e7b2cd6a44bd9802c3204 239 Pfam PF13174 Tetratricopeptide repeat 194 226 3.6E-7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0426 df0bc53ec73e7b2cd6a44bd9802c3204 239 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 1 239 19.229 T 11-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 dqs_3494 63a930d8868c7260b35e4a104bacdded 60 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 27 3.1E-11 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3494 63a930d8868c7260b35e4a104bacdded 60 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3494 63a930d8868c7260b35e4a104bacdded 60 SUPERFAMILY SSF54523 8 53 2.12E-15 T 11-10-2018 dqs_3494 63a930d8868c7260b35e4a104bacdded 60 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 1.6E-11 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3494 63a930d8868c7260b35e4a104bacdded 60 Gene3D G3DSA:3.30.700.10 8 60 3.8E-21 T 11-10-2018 dqs_3525 b6ad060331370ae3d19bcc56e0c1ea97 401 Pfam PF07690 Major Facilitator Superfamily 23 345 3.4E-28 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_3525 b6ad060331370ae3d19bcc56e0c1ea97 401 SUPERFAMILY SSF103473 10 393 3.66E-53 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_3525 b6ad060331370ae3d19bcc56e0c1ea97 401 Gene3D G3DSA:1.20.1250.20 7 391 3.4E-73 T 11-10-2018 dqs_1468 139752030916a2ec5d3f3ad5b315c378 49 Pfam PF11346 Protein of unknown function (DUF3149) 3 42 1.4E-18 T 11-10-2018 IPR021494 Protein of unknown function DUF3149 dqs_3231 896f99e21f5a9fda9d6770d8a1420a00 468 Pfam PF13746 4Fe-4S dicluster domain 210 315 1.6E-44 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3231 896f99e21f5a9fda9d6770d8a1420a00 468 Pfam PF12801 4Fe-4S binding domain 86 126 4.1E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3231 896f99e21f5a9fda9d6770d8a1420a00 468 Gene3D G3DSA:2.60.40.10 352 467 7.5E-27 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_3231 896f99e21f5a9fda9d6770d8a1420a00 468 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 32 466 9.8E-159 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 dqs_3231 896f99e21f5a9fda9d6770d8a1420a00 468 SUPERFAMILY SSF54862 96 361 1.26E-32 T 11-10-2018 dqs_3231 896f99e21f5a9fda9d6770d8a1420a00 468 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 352 468 3.7E-30 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain dqs_3231 896f99e21f5a9fda9d6770d8a1420a00 468 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 263 274 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_0062 f6186fed377fc32354f8c270cd4936aa 628 Pfam PF05057 Putative serine esterase (DUF676) 205 304 2.2E-5 T 11-10-2018 IPR007751 Domain of unknown function DUF676, lipase-like dqs_0062 f6186fed377fc32354f8c270cd4936aa 628 SUPERFAMILY SSF53474 198 404 5.25E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0062 f6186fed377fc32354f8c270cd4936aa 628 Gene3D G3DSA:3.40.50.1820 201 416 7.1E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1347 f1af29f65f8cf9df7d8b515a2d0e18d8 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 1.7E-176 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 dqs_1347 f1af29f65f8cf9df7d8b515a2d0e18d8 522 PIRSF PIRSF006446 337 519 2.8E-34 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 dqs_1347 f1af29f65f8cf9df7d8b515a2d0e18d8 522 PIRSF PIRSF006446 2 324 9.3E-114 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 dqs_3833 d88fa91e2bfebf0aaee787a18fc1a9bd 119 SUPERFAMILY SSF51182 28 116 4.77E-18 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3833 d88fa91e2bfebf0aaee787a18fc1a9bd 119 Gene3D G3DSA:2.60.120.10 3 115 1.7E-27 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3833 d88fa91e2bfebf0aaee787a18fc1a9bd 119 Pfam PF05899 Protein of unknown function (DUF861) 40 113 3.4E-18 T 11-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 dqs_3763 594a9ef1ca80a527799e81741674efbd 302 SMART SM00240 212 261 2.0E-7 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_3763 594a9ef1ca80a527799e81741674efbd 302 Gene3D G3DSA:2.60.200.20 176 296 2.8E-15 T 11-10-2018 dqs_3763 594a9ef1ca80a527799e81741674efbd 302 SUPERFAMILY SSF55073 5 176 1.49E-38 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3763 594a9ef1ca80a527799e81741674efbd 302 SUPERFAMILY SSF49879 206 286 1.53E-15 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 dqs_3763 594a9ef1ca80a527799e81741674efbd 302 Gene3D G3DSA:3.30.70.1230 2 175 5.8E-40 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3763 594a9ef1ca80a527799e81741674efbd 302 Pfam PF00498 FHA domain 214 258 4.4E-10 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_3763 594a9ef1ca80a527799e81741674efbd 302 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 7 163 2.0E-13 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 dqs_3013 0169329eec95cf26d2f4104328f657cd 243 Pfam PF08808 RES domain 64 207 3.7E-31 T 11-10-2018 IPR014914 RES domain dqs_3013 0169329eec95cf26d2f4104328f657cd 243 SMART SM00953 73 208 1.5E-42 T 11-10-2018 IPR014914 RES domain dqs_3143 f1d2adef897c678a7b5572a4adcb6785 202 Pfam PF05962 HutD 14 181 5.3E-46 T 11-10-2018 IPR010282 Uncharacterised protein family HutD/Ves dqs_3143 f1d2adef897c678a7b5572a4adcb6785 202 Gene3D G3DSA:2.60.120.10 120 177 3.8E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3143 f1d2adef897c678a7b5572a4adcb6785 202 SUPERFAMILY SSF51182 9 180 1.6E-43 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3143 f1d2adef897c678a7b5572a4adcb6785 202 Gene3D G3DSA:2.60.120.10 15 119 3.8E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3786 56c834042780ee2b13cade942a22efdf 488 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 487 1.1E-225 T 11-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 dqs_3786 56c834042780ee2b13cade942a22efdf 488 SUPERFAMILY SSF46548 2 154 1.94E-41 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_3786 56c834042780ee2b13cade942a22efdf 488 SUPERFAMILY SSF51971 142 411 1.77E-67 T 11-10-2018 dqs_3786 56c834042780ee2b13cade942a22efdf 488 SUPERFAMILY SSF51971 380 482 9.89E-9 T 11-10-2018 dqs_3786 56c834042780ee2b13cade942a22efdf 488 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 469 2.0E-24 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_3786 56c834042780ee2b13cade942a22efdf 488 PRINTS PR00419 Adrenodoxin reductase family signature 296 310 2.7E-21 T 11-10-2018 dqs_3786 56c834042780ee2b13cade942a22efdf 488 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 2.7E-21 T 11-10-2018 dqs_3786 56c834042780ee2b13cade942a22efdf 488 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 2.7E-21 T 11-10-2018 dqs_3786 56c834042780ee2b13cade942a22efdf 488 Gene3D G3DSA:3.50.50.60 263 410 2.5E-32 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3786 56c834042780ee2b13cade942a22efdf 488 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 24 131 1.4E-25 T 11-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 dqs_3786 56c834042780ee2b13cade942a22efdf 488 Gene3D G3DSA:3.40.50.720 143 262 5.4E-17 T 11-10-2018 dqs_3786 56c834042780ee2b13cade942a22efdf 488 Gene3D G3DSA:1.10.1060.10 9 142 1.5E-24 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_2550 cdeb0f21716be7459bf2d7cbe2d49bd6 1194 SUPERFAMILY SSF52518 49 231 2.06E-16 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2550 cdeb0f21716be7459bf2d7cbe2d49bd6 1194 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 742 929 1.5E-15 T 11-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 dqs_2550 cdeb0f21716be7459bf2d7cbe2d49bd6 1194 Gene3D G3DSA:3.40.50.970 16 226 7.1E-24 T 11-10-2018 dqs_2550 cdeb0f21716be7459bf2d7cbe2d49bd6 1194 SUPERFAMILY SSF53323 734 974 2.62E-20 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 dqs_2550 cdeb0f21716be7459bf2d7cbe2d49bd6 1194 SUPERFAMILY SSF52518 443 629 1.24E-12 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2550 cdeb0f21716be7459bf2d7cbe2d49bd6 1194 Gene3D G3DSA:3.40.920.10 732 935 2.5E-15 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 dqs_2095 2d3c39af6c9bc1fc211b5c9e511c80db 303 Pfam PF05661 Protein of unknown function (DUF808) 2 286 8.7E-112 T 11-10-2018 IPR008526 Inner membrane protein YedI dqs_2095 2d3c39af6c9bc1fc211b5c9e511c80db 303 PIRSF PIRSF016660 1 300 2.7E-112 T 11-10-2018 IPR008526 Inner membrane protein YedI dqs_3982 7e4ccd5122fb004f5b8419c59f02e6da 274 Gene3D G3DSA:3.40.50.11240 68 246 7.1E-63 T 11-10-2018 dqs_3982 7e4ccd5122fb004f5b8419c59f02e6da 274 PIRSF PIRSF018982 1 257 2.9E-95 T 11-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 dqs_3982 7e4ccd5122fb004f5b8419c59f02e6da 274 Gene3D G3DSA:1.10.30.40 4 56 6.7E-8 T 11-10-2018 dqs_3982 7e4ccd5122fb004f5b8419c59f02e6da 274 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 13 247 1.1E-90 T 11-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 dqs_1276 e618c2151c9f5b962b7932bf511168a0 224 SUPERFAMILY SSF100950 37 217 1.21E-42 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_1276 e618c2151c9f5b962b7932bf511168a0 224 Pfam PF02589 LUD domain 44 217 1.3E-30 T 11-10-2018 IPR003741 LUD domain dqs_1276 e618c2151c9f5b962b7932bf511168a0 224 Gene3D G3DSA:3.40.50.10420 35 218 4.8E-38 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily dqs_0550 b58627a316eb6d0441507498eafd67e8 522 Gene3D G3DSA:3.40.50.1980 210 490 3.9E-183 T 11-10-2018 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 Gene3D G3DSA:3.40.50.1980 69 209 3.9E-183 T 11-10-2018 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 87 94 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 Pfam PF11844 Domain of unknown function (DUF3364) 2 55 1.4E-20 T 11-10-2018 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 Gene3D G3DSA:3.40.50.1980 58 483 3.9E-183 T 11-10-2018 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 Gene3D G3DSA:1.20.89.10 320 506 3.9E-183 T 11-10-2018 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 2 522 4.9E-266 T 11-10-2018 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 SUPERFAMILY SSF53807 2 521 4.91E-171 T 11-10-2018 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 69 500 1.9E-118 T 11-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 dqs_0550 b58627a316eb6d0441507498eafd67e8 522 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 150 164 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 dqs_3129 06cf48a284685d1fcfda1273af8a6411 216 Gene3D G3DSA:3.40.430.10 1 210 1.9E-43 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 dqs_3129 06cf48a284685d1fcfda1273af8a6411 216 Pfam PF01872 RibD C-terminal domain 9 197 2.0E-18 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 dqs_3129 06cf48a284685d1fcfda1273af8a6411 216 SUPERFAMILY SSF53597 9 193 2.38E-28 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 Gene3D G3DSA:3.40.1160.10 1 269 3.2E-95 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 Pfam PF01472 PUA domain 281 353 7.6E-21 T 11-10-2018 IPR002478 PUA domain GO:0003723 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 SMART SM00359 281 363 3.9E-19 T 11-10-2018 IPR002478 PUA domain GO:0003723 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 SUPERFAMILY SSF53633 9 260 5.11E-71 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 Hamap MF_00456 Glutamate 5-kinase [proB]. 9 263 36.96 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 PRINTS PR00474 Glutamate 5-kinase family signature 80 108 3.8E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 PRINTS PR00474 Glutamate 5-kinase family signature 213 233 3.8E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 PRINTS PR00474 Glutamate 5-kinase family signature 46 60 3.8E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 3.8E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 PRINTS PR00474 Glutamate 5-kinase family signature 120 141 3.8E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 PIRSF PIRSF000729 4 371 2.9E-131 T 11-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 Pfam PF00696 Amino acid kinase family 10 237 1.9E-45 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 TIGRFAM TIGR01027 proB: glutamate 5-kinase 9 369 4.0E-131 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 Gene3D G3DSA:2.30.130.10 270 371 7.5E-34 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 SUPERFAMILY SSF88697 281 370 5.3E-25 T 11-10-2018 IPR015947 PUA-like superfamily dqs_3302 4519971742d8de8a087cbab60f26bbb0 371 ProSitePatterns PS00902 Glutamate 5-kinase signature. 211 228 - T 11-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 dqs_2795 d90c8b6dfec344b76b5ab348a91ad026 569 Pfam PF00990 Diguanylate cyclase, GGDEF domain 399 552 1.4E-40 T 11-10-2018 IPR000160 GGDEF domain dqs_2795 d90c8b6dfec344b76b5ab348a91ad026 569 SUPERFAMILY SSF55073 403 555 2.28E-43 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2795 d90c8b6dfec344b76b5ab348a91ad026 569 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 394 555 1.2E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_2795 d90c8b6dfec344b76b5ab348a91ad026 569 Pfam PF02743 Cache domain 45 276 7.7E-12 T 11-10-2018 IPR033479 Double Cache domain 1 dqs_2795 d90c8b6dfec344b76b5ab348a91ad026 569 Gene3D G3DSA:3.30.70.270 384 557 8.0E-53 T 11-10-2018 dqs_2795 d90c8b6dfec344b76b5ab348a91ad026 569 Gene3D G3DSA:1.20.1480.50 275 372 3.9E-9 T 11-10-2018 dqs_2795 d90c8b6dfec344b76b5ab348a91ad026 569 SMART SM00267 387 556 6.4E-60 T 11-10-2018 IPR000160 GGDEF domain dqs_2795 d90c8b6dfec344b76b5ab348a91ad026 569 Gene3D G3DSA:3.30.450.20 84 188 5.6E-16 T 11-10-2018 dqs_3695 5168526bbe4b56aa9818aa16da485b9c 201 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 1 25 1.0E-9 T 11-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 dqs_3695 5168526bbe4b56aa9818aa16da485b9c 201 Gene3D G3DSA:3.40.50.300 10 201 1.2E-63 T 11-10-2018 dqs_3695 5168526bbe4b56aa9818aa16da485b9c 201 PIRSF PIRSF015617 5 201 4.2E-67 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 dqs_3695 5168526bbe4b56aa9818aa16da485b9c 201 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 28 201 1.4E-64 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 dqs_3695 5168526bbe4b56aa9818aa16da485b9c 201 SUPERFAMILY SSF52540 12 201 1.03E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3695 5168526bbe4b56aa9818aa16da485b9c 201 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 32 201 7.0E-58 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 dqs_3603 7e25e633be65c7d4125714bffc1e1433 156 SMART SM00732 16 116 4.3E-22 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 dqs_3603 7e25e633be65c7d4125714bffc1e1433 156 Gene3D G3DSA:3.30.420.140 14 151 5.4E-42 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 dqs_3603 7e25e633be65c7d4125714bffc1e1433 156 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 16 152 22.968 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 dqs_3603 7e25e633be65c7d4125714bffc1e1433 156 Pfam PF03652 Holliday junction resolvase 17 149 7.5E-40 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 dqs_3603 7e25e633be65c7d4125714bffc1e1433 156 SUPERFAMILY SSF53098 16 149 2.58E-37 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_3603 7e25e633be65c7d4125714bffc1e1433 156 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 19 149 9.1E-33 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 dqs_2587 aa1116c73138e7c5d238a9bfe78a0de7 331 Gene3D G3DSA:1.10.620.20 1 331 1.1E-116 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 dqs_2587 aa1116c73138e7c5d238a9bfe78a0de7 331 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 52 274 9.2E-74 T 11-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 dqs_2587 aa1116c73138e7c5d238a9bfe78a0de7 331 PIRSF PIRSF000040 1 331 1.1E-102 T 11-10-2018 IPR012078 Methane/phenol monooxygenase, hydroxylase component GO:0016709|GO:0055114 dqs_2587 aa1116c73138e7c5d238a9bfe78a0de7 331 SUPERFAMILY SSF47240 1 329 2.3E-113 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_0976 363eff66076ad911accf61689bbb3853 108 Pfam PF02699 Preprotein translocase subunit 22 97 9.1E-30 T 11-10-2018 IPR003849 Preprotein translocase YajC dqs_0976 363eff66076ad911accf61689bbb3853 108 SMART SM01323 18 100 1.2E-45 T 11-10-2018 IPR003849 Preprotein translocase YajC dqs_0976 363eff66076ad911accf61689bbb3853 108 PRINTS PR01853 Bacterial YajC preprotein translocase signature 20 40 6.7E-16 T 11-10-2018 IPR003849 Preprotein translocase YajC dqs_0976 363eff66076ad911accf61689bbb3853 108 PRINTS PR01853 Bacterial YajC preprotein translocase signature 58 76 6.7E-16 T 11-10-2018 IPR003849 Preprotein translocase YajC dqs_0976 363eff66076ad911accf61689bbb3853 108 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 100 1.8E-30 T 11-10-2018 IPR003849 Preprotein translocase YajC dqs_3646 79e6ac97244742701d89ae8c3457510e 159 Gene3D G3DSA:3.30.70.790 71 141 3.7E-29 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 dqs_3646 79e6ac97244742701d89ae8c3457510e 159 SUPERFAMILY SSF69287 1 70 1.44E-16 T 11-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily dqs_3646 79e6ac97244742701d89ae8c3457510e 159 PIRSF PIRSF036402 6 154 3.6E-44 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 dqs_3646 79e6ac97244742701d89ae8c3457510e 159 Gene3D G3DSA:2.60.260.20 1 69 9.4E-22 T 11-10-2018 dqs_3646 79e6ac97244742701d89ae8c3457510e 159 Pfam PF02814 UreE urease accessory protein, N-terminal domain 14 64 1.4E-15 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal dqs_3646 79e6ac97244742701d89ae8c3457510e 159 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 138 24.121 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 dqs_3646 79e6ac97244742701d89ae8c3457510e 159 SUPERFAMILY SSF69737 70 137 2.35E-22 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 dqs_3646 79e6ac97244742701d89ae8c3457510e 159 Pfam PF05194 UreE urease accessory protein, C-terminal domain 71 144 4.5E-27 T 11-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 dqs_3646 79e6ac97244742701d89ae8c3457510e 159 SMART SM00988 3 64 7.8E-18 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal dqs_1232 63d1ed89598bc1976d52ccd2aecb93e8 201 Gene3D G3DSA:3.40.50.850 1 200 3.7E-46 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 dqs_1232 63d1ed89598bc1976d52ccd2aecb93e8 201 SUPERFAMILY SSF52499 4 195 1.83E-42 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 dqs_1232 63d1ed89598bc1976d52ccd2aecb93e8 201 Pfam PF00857 Isochorismatase family 7 187 1.1E-36 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 Gene3D G3DSA:1.20.5.1150 16 54 1.8E-19 T 11-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 11-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.2E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.2E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.2E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.2E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.9E-23 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 Pfam PF01165 Ribosomal protein S21 4 56 3.8E-20 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 57 6.0E-14 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3362 b801db023815c1ad0ca914140b3a2216 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.191 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3078 ef37b0d2c79d1ee779f88104ef214884 122 Pfam PF05610 Protein of unknown function (DUF779) 15 107 8.3E-47 T 11-10-2018 IPR008497 Protein of unknown function DUF779 dqs_3078 ef37b0d2c79d1ee779f88104ef214884 122 PIRSF PIRSF009151 1 122 4.6E-56 T 11-10-2018 IPR008497 Protein of unknown function DUF779 dqs_2845 d56c30c59bf93f00fc4a8432b3d9d3cb 125 Pfam PF01312 FlhB HrpN YscU SpaS Family 17 88 1.5E-16 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 dqs_2845 d56c30c59bf93f00fc4a8432b3d9d3cb 125 SUPERFAMILY SSF160544 13 92 6.41E-22 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal dqs_2845 d56c30c59bf93f00fc4a8432b3d9d3cb 125 Gene3D G3DSA:3.40.1690.10 13 93 8.5E-23 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 SMART SM00849 43 234 2.7E-29 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 Pfam PF00258 Flavodoxin 270 400 1.1E-10 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 Gene3D G3DSA:3.40.50.360 267 421 3.2E-42 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 Pfam PF00753 Metallo-beta-lactamase superfamily 43 179 3.9E-10 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 SUPERFAMILY SSF52218 266 410 6.95E-36 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 PIRSF PIRSF005243 9 414 6.0E-119 T 11-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 ProSitePatterns PS00201 Flavodoxin signature. 270 286 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 SUPERFAMILY SSF56281 12 291 2.49E-44 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0536 3defaf6b4b772d7c735cece23387fc08 429 Gene3D G3DSA:3.60.15.10 10 264 7.9E-78 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1461 8e2e34803b0e7ccca0038341e65bee68 69 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 2.5E-21 T 11-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type dqs_1461 8e2e34803b0e7ccca0038341e65bee68 69 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 48 2.8E-20 T 11-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 Gene3D G3DSA:3.30.110.120 264 397 2.0E-141 T 11-10-2018 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 PIRSF PIRSF006256 12 789 1.4E-282 T 11-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 SUPERFAMILY SSF54975 14 101 4.36E-25 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 Pfam PF07503 HypF finger 169 201 3.7E-15 T 11-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 Pfam PF07503 HypF finger 119 151 1.5E-17 T 11-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 SUPERFAMILY SSF55821 187 426 6.71E-39 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 Gene3D G3DSA:3.30.420.350 518 770 4.6E-121 T 11-10-2018 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 Gene3D G3DSA:3.30.420.360 415 782 4.6E-121 T 11-10-2018 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 21 781 1.3E-222 T 11-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 ProSitePatterns PS00150 Acylphosphatase signature 1. 21 31 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 Pfam PF00708 Acylphosphatase 18 101 1.6E-21 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 Gene3D G3DSA:3.90.870.50 20 388 2.0E-141 T 11-10-2018 dqs_3953 d885b46a9dfd864a869ab5f8e1db363d 790 Pfam PF01300 Telomere recombination 224 415 4.6E-46 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 dqs_1672 3a145bf7884e7e8ab388d1f1ccaa66a5 129 PIRSF PIRSF000178 1 129 4.6E-29 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1672 3a145bf7884e7e8ab388d1f1ccaa66a5 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 7 124 3.6E-31 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1672 3a145bf7884e7e8ab388d1f1ccaa66a5 129 Gene3D G3DSA:1.20.1300.10 3 129 3.7E-42 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1672 3a145bf7884e7e8ab388d1f1ccaa66a5 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 8 126 2.4E-41 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1672 3a145bf7884e7e8ab388d1f1ccaa66a5 129 SUPERFAMILY SSF81343 6 129 3.49E-32 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1178 08a70213445243a2634ef541032412e0 296 SUPERFAMILY SSF51735 6 173 2.4E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1178 08a70213445243a2634ef541032412e0 296 Gene3D G3DSA:1.10.3660.10 181 287 1.2E-35 T 11-10-2018 dqs_1178 08a70213445243a2634ef541032412e0 296 Pfam PF02153 Prephenate dehydrogenase 19 276 5.2E-69 T 11-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 dqs_1178 08a70213445243a2634ef541032412e0 296 Gene3D G3DSA:3.40.50.720 5 180 1.9E-58 T 11-10-2018 dqs_1178 08a70213445243a2634ef541032412e0 296 SUPERFAMILY SSF48179 177 285 4.08E-34 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 161 325 5.2E-30 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 Hamap MF_01517 Malate dehydrogenase [mdh]. 2 329 55.175 T 11-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 4 324 5.3E-141 T 11-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 Gene3D G3DSA:3.90.110.10 159 330 6.7E-59 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 6 146 9.0E-38 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 Gene3D G3DSA:3.40.50.720 1 158 6.2E-59 T 11-10-2018 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 SUPERFAMILY SSF56327 161 329 1.36E-56 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 PIRSF PIRSF000102 2 329 4.6E-59 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 dqs_1670 0ee0f9499e36fb3c24cb06a288b4fb7a 330 SUPERFAMILY SSF51735 4 159 3.65E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1275 cc5bdd4bb49aba2b5b80d30caa70d408 483 Pfam PF02589 LUD domain 81 306 5.1E-53 T 11-10-2018 IPR003741 LUD domain dqs_1275 cc5bdd4bb49aba2b5b80d30caa70d408 483 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 30 403 8.3E-142 T 11-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 dqs_1275 cc5bdd4bb49aba2b5b80d30caa70d408 483 Pfam PF13183 4Fe-4S dicluster domain 323 389 6.6E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_1275 cc5bdd4bb49aba2b5b80d30caa70d408 483 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 325 336 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1275 cc5bdd4bb49aba2b5b80d30caa70d408 483 SUPERFAMILY SSF100950 76 307 4.6E-42 T 11-10-2018 IPR037171 NagB/RpiA transferase-like dqs_1275 cc5bdd4bb49aba2b5b80d30caa70d408 483 SUPERFAMILY SSF46548 289 401 6.8E-16 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_1275 cc5bdd4bb49aba2b5b80d30caa70d408 483 Pfam PF11870 Domain of unknown function (DUF3390) 397 482 8.5E-25 T 11-10-2018 IPR024569 4Fe-4S binding protein, C-terminal dqs_1275 cc5bdd4bb49aba2b5b80d30caa70d408 483 Gene3D G3DSA:3.40.50.10420 147 306 4.1E-15 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily dqs_0329 a70af7d175fd4fef6eb182d5d1ddf5aa 447 SUPERFAMILY SSF52540 73 361 9.77E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0329 a70af7d175fd4fef6eb182d5d1ddf5aa 447 Gene3D G3DSA:3.40.50.300 215 374 1.7E-49 T 11-10-2018 dqs_0329 a70af7d175fd4fef6eb182d5d1ddf5aa 447 Gene3D G3DSA:3.40.50.300 1 211 8.4E-76 T 11-10-2018 dqs_0329 a70af7d175fd4fef6eb182d5d1ddf5aa 447 Pfam PF00271 Helicase conserved C-terminal domain 237 340 6.1E-30 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0329 a70af7d175fd4fef6eb182d5d1ddf5aa 447 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site dqs_0329 a70af7d175fd4fef6eb182d5d1ddf5aa 447 SMART SM00490 259 340 4.9E-34 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0329 a70af7d175fd4fef6eb182d5d1ddf5aa 447 Pfam PF00270 DEAD/DEAH box helicase 25 190 5.7E-48 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_0329 a70af7d175fd4fef6eb182d5d1ddf5aa 447 SMART SM00487 20 222 1.4E-56 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 121 155 - T 11-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 12 162 1.8E-55 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 10 161 47.278 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 69 85 8.9E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 91 107 8.9E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 13 26 8.9E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 115 134 8.9E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 146 158 8.9E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 Gene3D G3DSA:3.30.420.10 12 163 8.4E-50 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 SUPERFAMILY SSF53098 11 162 4.3E-55 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_0641 ee8fc02e9ab02188ad8cbccdc1dce015 183 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 12 158 6.6E-55 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 dqs_1198 32ff5da90ed300fb24b1734a91e7f3d0 217 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 5 216 33.829 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 dqs_1198 32ff5da90ed300fb24b1734a91e7f3d0 217 SUPERFAMILY SSF53335 14 213 3.92E-40 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1198 32ff5da90ed300fb24b1734a91e7f3d0 217 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 12 215 3.5E-60 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 dqs_1198 32ff5da90ed300fb24b1734a91e7f3d0 217 Gene3D G3DSA:3.40.50.150 2 217 1.4E-70 T 11-10-2018 dqs_1198 32ff5da90ed300fb24b1734a91e7f3d0 217 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 140 155 - T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 dqs_1198 32ff5da90ed300fb24b1734a91e7f3d0 217 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 15 214 1.5E-56 T 11-10-2018 dqs_2811 e0e33f055f67ca4b062b41deda10c415 240 Pfam PF04264 YceI-like domain 115 233 6.2E-9 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like dqs_2811 e0e33f055f67ca4b062b41deda10c415 240 Gene3D G3DSA:2.40.128.110 50 236 1.6E-16 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily dqs_2811 e0e33f055f67ca4b062b41deda10c415 240 SMART SM00867 67 234 0.0019 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like dqs_2811 e0e33f055f67ca4b062b41deda10c415 240 SUPERFAMILY SSF101874 127 235 1.7E-12 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily dqs_2125 06d1534a55471f612303ef9309eee2df 177 SUPERFAMILY SSF51182 98 174 6.02E-15 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2125 06d1534a55471f612303ef9309eee2df 177 Pfam PF07883 Cupin domain 114 169 8.3E-9 T 11-10-2018 IPR013096 Cupin 2, conserved barrel dqs_2125 06d1534a55471f612303ef9309eee2df 177 Gene3D G3DSA:2.60.120.10 33 177 2.4E-34 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3823 7dee0abd6e1c9bb3b8c6d6931bf66378 337 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 83 333 5.6E-43 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 dqs_3823 7dee0abd6e1c9bb3b8c6d6931bf66378 337 SUPERFAMILY SSF56529 77 334 6.93E-59 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_3823 7dee0abd6e1c9bb3b8c6d6931bf66378 337 Gene3D G3DSA:3.90.850.10 1 335 1.8E-141 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_1524 4eb8640a0593856937d84ca63100d7d0 159 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 9 156 6.6E-60 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1524 4eb8640a0593856937d84ca63100d7d0 159 Gene3D G3DSA:3.40.30.10 74 159 9.4E-24 T 11-10-2018 dqs_1524 4eb8640a0593856937d84ca63100d7d0 159 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 113 131 - T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1524 4eb8640a0593856937d84ca63100d7d0 159 Gene3D G3DSA:1.10.10.1590 1 73 6.8E-25 T 11-10-2018 dqs_1524 4eb8640a0593856937d84ca63100d7d0 159 SUPERFAMILY SSF52833 2 156 2.24E-52 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1524 4eb8640a0593856937d84ca63100d7d0 159 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 11 156 2.7E-49 T 11-10-2018 dqs_1524 4eb8640a0593856937d84ca63100d7d0 159 PIRSF PIRSF000216 1 159 7.8E-56 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1015 a35e3a61bf28208cea3a8cceab925e6d 433 Gene3D G3DSA:1.10.10.10 371 429 5.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1015 a35e3a61bf28208cea3a8cceab925e6d 433 Pfam PF03861 ANTAR domain 373 422 5.7E-20 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 dqs_1015 a35e3a61bf28208cea3a8cceab925e6d 433 Pfam PF08376 Nitrate and nitrite sensing 34 274 4.6E-52 T 11-10-2018 IPR013587 Nitrate/nitrite sensing protein dqs_1015 a35e3a61bf28208cea3a8cceab925e6d 433 SMART SM01012 369 424 1.5E-24 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 dqs_1015 a35e3a61bf28208cea3a8cceab925e6d 433 SUPERFAMILY SSF52172 349 422 1.74E-16 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0827 2f1bd24f5510e4cb057d6d09db6c53c2 218 Pfam PF01195 Peptidyl-tRNA hydrolase 8 188 3.4E-56 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 dqs_0827 2f1bd24f5510e4cb057d6d09db6c53c2 218 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 6 182 34.381 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 dqs_0827 2f1bd24f5510e4cb057d6d09db6c53c2 218 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 7 189 3.0E-59 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 dqs_0827 2f1bd24f5510e4cb057d6d09db6c53c2 218 SUPERFAMILY SSF53178 7 189 1.96E-66 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 dqs_0827 2f1bd24f5510e4cb057d6d09db6c53c2 218 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 dqs_0827 2f1bd24f5510e4cb057d6d09db6c53c2 218 Gene3D G3DSA:3.40.50.1470 4 193 3.1E-66 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 dqs_2752 99697cffac69b01d9c0cf96cb0c8073e 867 SUPERFAMILY SSF46626 520 867 1.38E-9 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1861 757137c9e99e874fcf4eac813aca0e40 229 Gene3D G3DSA:3.30.420.40 94 181 7.4E-58 T 11-10-2018 dqs_1861 757137c9e99e874fcf4eac813aca0e40 229 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 212 7.0E-50 T 11-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 dqs_1861 757137c9e99e874fcf4eac813aca0e40 229 Pfam PF00814 Glycoprotease family 32 145 5.9E-23 T 11-10-2018 IPR000905 Gcp-like domain dqs_1861 757137c9e99e874fcf4eac813aca0e40 229 SUPERFAMILY SSF53067 1 101 1.68E-22 T 11-10-2018 dqs_1861 757137c9e99e874fcf4eac813aca0e40 229 SUPERFAMILY SSF53067 105 210 7.51E-19 T 11-10-2018 dqs_1861 757137c9e99e874fcf4eac813aca0e40 229 Gene3D G3DSA:3.30.420.40 3 212 7.4E-58 T 11-10-2018 dqs_0723 3e6b0f1312af3cf3a68fc2cd77581dbd 480 Gene3D G3DSA:1.20.1600.10 27 435 2.0E-83 T 11-10-2018 dqs_0723 3e6b0f1312af3cf3a68fc2cd77581dbd 480 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 26 428 1.2E-86 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 dqs_0723 3e6b0f1312af3cf3a68fc2cd77581dbd 480 Pfam PF02321 Outer membrane efflux protein 240 417 2.1E-26 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0723 3e6b0f1312af3cf3a68fc2cd77581dbd 480 Pfam PF02321 Outer membrane efflux protein 30 215 1.7E-17 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0723 3e6b0f1312af3cf3a68fc2cd77581dbd 480 SUPERFAMILY SSF56954 29 439 4.84E-79 T 11-10-2018 dqs_2438 8e3db7ffc8989624e58c241dba8a5930 210 Gene3D G3DSA:1.10.357.10 5 206 2.4E-39 T 11-10-2018 dqs_2438 8e3db7ffc8989624e58c241dba8a5930 210 SUPERFAMILY SSF48498 84 160 2.18E-6 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_2438 8e3db7ffc8989624e58c241dba8a5930 210 SUPERFAMILY SSF46689 6 76 2.36E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2438 8e3db7ffc8989624e58c241dba8a5930 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 60 2.0E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2691 a7f8770eea8d9e1eb92e3164f143e5da 317 Pfam PF03547 Membrane transport protein 10 150 1.8E-10 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 dqs_2691 a7f8770eea8d9e1eb92e3164f143e5da 317 Pfam PF03547 Membrane transport protein 162 304 1.4E-8 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 dqs_2997 03ca70edcdbfd6bc87101dde6e9f6e4e 62 Pfam PF13490 Putative zinc-finger 4 38 1.4E-10 T 11-10-2018 IPR027383 Putative zinc-finger dqs_2629 b16509db0a33dcbdbece0a724dd33405 265 Pfam PF01925 Sulfite exporter TauE/SafE 5 258 4.7E-40 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 dqs_2659 0f1a2fc85492b46144d042815ad7be18 192 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 67 115 1.0E-13 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 dqs_2659 0f1a2fc85492b46144d042815ad7be18 192 SUPERFAMILY SSF69118 8 190 8.95E-58 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 dqs_2659 0f1a2fc85492b46144d042815ad7be18 192 Gene3D G3DSA:1.20.1290.10 69 192 7.5E-40 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 dqs_2659 0f1a2fc85492b46144d042815ad7be18 192 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 10 186 7.7E-67 T 11-10-2018 IPR010195 Uncharacterised peroxidase-related dqs_2659 0f1a2fc85492b46144d042815ad7be18 192 Gene3D G3DSA:1.20.5.810 16 67 3.2E-26 T 11-10-2018 dqs_2659 0f1a2fc85492b46144d042815ad7be18 192 Pfam PF02627 Carboxymuconolactone decarboxylase family 49 134 2.4E-17 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 dqs_1601 ed75f91b9dad51fa5ae7083a325d238e 140 SUPERFAMILY SSF46955 1 106 1.98E-22 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_1601 ed75f91b9dad51fa5ae7083a325d238e 140 Pfam PF13411 MerR HTH family regulatory protein 2 67 6.4E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1601 ed75f91b9dad51fa5ae7083a325d238e 140 SMART SM00422 1 69 2.4E-18 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1601 ed75f91b9dad51fa5ae7083a325d238e 140 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.4E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1601 ed75f91b9dad51fa5ae7083a325d238e 140 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 4.4E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1601 ed75f91b9dad51fa5ae7083a325d238e 140 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.4E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1601 ed75f91b9dad51fa5ae7083a325d238e 140 Gene3D G3DSA:1.10.1660.10 1 123 9.0E-26 T 11-10-2018 dqs_2165 fe649a6734622e9c89ec12ca8e441762 64 Pfam PF04384 Iron-sulphur cluster assembly 1 63 3.4E-32 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 dqs_2165 fe649a6734622e9c89ec12ca8e441762 64 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 2 63 1.4E-34 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 dqs_2165 fe649a6734622e9c89ec12ca8e441762 64 SUPERFAMILY SSF140319 1 62 1.44E-26 T 11-10-2018 IPR036762 IscX-like superfamily dqs_2165 fe649a6734622e9c89ec12ca8e441762 64 Gene3D G3DSA:1.10.10.600 1 64 3.6E-29 T 11-10-2018 IPR036762 IscX-like superfamily dqs_2165 fe649a6734622e9c89ec12ca8e441762 64 PIRSF PIRSF039003 1 64 4.0E-36 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 dqs_2452 4d34bba1980cc82846559382c74724b9 371 Pfam PF13439 Glycosyltransferase Family 4 14 158 3.7E-17 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_2452 4d34bba1980cc82846559382c74724b9 371 Gene3D G3DSA:3.40.50.2000 14 348 2.8E-67 T 11-10-2018 dqs_2452 4d34bba1980cc82846559382c74724b9 371 Gene3D G3DSA:3.40.50.2000 158 341 2.8E-67 T 11-10-2018 dqs_2452 4d34bba1980cc82846559382c74724b9 371 Pfam PF00534 Glycosyl transferases group 1 173 334 1.2E-34 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_2452 4d34bba1980cc82846559382c74724b9 371 SUPERFAMILY SSF53756 3 358 3.14E-80 T 11-10-2018 dqs_1973 8e6d7cf38ba4822403099b6cb4fd1cc5 166 SUPERFAMILY SSF142433 3 159 5.1E-44 T 11-10-2018 IPR036653 CinA-like, C-terminal dqs_1973 8e6d7cf38ba4822403099b6cb4fd1cc5 166 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 10 155 7.8E-29 T 11-10-2018 IPR008136 CinA, C-terminal dqs_1973 8e6d7cf38ba4822403099b6cb4fd1cc5 166 Gene3D G3DSA:3.90.950.20 1 159 5.8E-48 T 11-10-2018 IPR036653 CinA-like, C-terminal dqs_1973 8e6d7cf38ba4822403099b6cb4fd1cc5 166 Pfam PF02464 Competence-damaged protein 6 156 7.2E-42 T 11-10-2018 IPR008136 CinA, C-terminal dqs_2140 6d7c632f3a4dba687cfe1b9e9c1690a6 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 166 177 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_2140 6d7c632f3a4dba687cfe1b9e9c1690a6 544 SUPERFAMILY SSF56801 3 523 2.09E-108 T 11-10-2018 dqs_2140 6d7c632f3a4dba687cfe1b9e9c1690a6 544 Gene3D G3DSA:3.30.300.30 415 524 6.9E-24 T 11-10-2018 dqs_2140 6d7c632f3a4dba687cfe1b9e9c1690a6 544 Pfam PF00501 AMP-binding enzyme 37 421 1.2E-69 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_2140 6d7c632f3a4dba687cfe1b9e9c1690a6 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 430 511 1.8E-14 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_2140 6d7c632f3a4dba687cfe1b9e9c1690a6 544 Gene3D G3DSA:3.40.50.12780 4 414 2.5E-79 T 11-10-2018 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 Gene3D G3DSA:3.40.50.2300 6 137 7.9E-48 T 11-10-2018 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 SMART SM00448 10 121 2.1E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 SUPERFAMILY SSF46894 141 202 4.25E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.5E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.5E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.5E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 Pfam PF00072 Response regulator receiver domain 12 121 1.8E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 Gene3D G3DSA:1.10.10.10 139 204 2.5E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 SUPERFAMILY SSF52172 11 161 2.13E-36 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 2.2E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_1498 ad38ffce5fc3ac8ae79cce07ba79a017 212 SMART SM00421 145 202 7.4E-24 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3719 76de4d03917ecf24d9578eec3887ca12 318 SUPERFAMILY SSF53756 66 295 1.0E-9 T 11-10-2018 dqs_3719 76de4d03917ecf24d9578eec3887ca12 318 Gene3D G3DSA:3.40.50.2000 122 283 1.7E-9 T 11-10-2018 dqs_3719 76de4d03917ecf24d9578eec3887ca12 318 Pfam PF13524 Glycosyl transferases group 1 212 286 6.6E-9 T 11-10-2018 dqs_2996 b7c3c26a7ccfb58cec7e57ff756a664a 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 183 4.6E-25 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_2996 b7c3c26a7ccfb58cec7e57ff756a664a 196 SUPERFAMILY SSF88659 119 184 1.31E-12 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_2996 b7c3c26a7ccfb58cec7e57ff756a664a 196 Gene3D G3DSA:1.10.10.10 111 185 1.6E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2996 b7c3c26a7ccfb58cec7e57ff756a664a 196 Gene3D G3DSA:1.10.1740.10 5 102 4.5E-13 T 11-10-2018 dqs_2996 b7c3c26a7ccfb58cec7e57ff756a664a 196 Pfam PF04542 Sigma-70 region 2 11 77 1.1E-13 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_2996 b7c3c26a7ccfb58cec7e57ff756a664a 196 Pfam PF08281 Sigma-70, region 4 128 177 3.2E-10 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_2996 b7c3c26a7ccfb58cec7e57ff756a664a 196 SUPERFAMILY SSF88946 8 89 1.45E-15 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_2996 b7c3c26a7ccfb58cec7e57ff756a664a 196 TIGRFAM TIGR02943 Sig70_famx1: RNA polymerase sigma-70 factor, TIGR02943 family 10 190 1.4E-76 T 11-10-2018 IPR014289 RNA polymerase sigma-24-related dqs_3707 17b3fa9e5cd9be507edccb5afb4c9152 325 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 321 1.9E-131 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 dqs_3707 17b3fa9e5cd9be507edccb5afb4c9152 325 Gene3D G3DSA:3.90.25.10 166 303 2.0E-121 T 11-10-2018 dqs_3707 17b3fa9e5cd9be507edccb5afb4c9152 325 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 240 1.5E-41 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 dqs_3707 17b3fa9e5cd9be507edccb5afb4c9152 325 SUPERFAMILY SSF51735 1 319 7.42E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3707 17b3fa9e5cd9be507edccb5afb4c9152 325 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 322 50.639 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 dqs_3707 17b3fa9e5cd9be507edccb5afb4c9152 325 Gene3D G3DSA:3.40.50.720 3 315 2.0E-121 T 11-10-2018 dqs_0123 e36fa2dc9f3555570f9fc01e62eaebed 215 Pfam PF00043 Glutathione S-transferase, C-terminal domain 133 201 5.1E-11 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal dqs_0123 e36fa2dc9f3555570f9fc01e62eaebed 215 SUPERFAMILY SSF47616 80 206 9.75E-28 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_0123 e36fa2dc9f3555570f9fc01e62eaebed 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 12 87 3.4E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_0123 e36fa2dc9f3555570f9fc01e62eaebed 215 Gene3D G3DSA:3.40.30.10 2 87 4.4E-25 T 11-10-2018 dqs_0123 e36fa2dc9f3555570f9fc01e62eaebed 215 Gene3D G3DSA:1.20.1050.10 95 204 3.7E-26 T 11-10-2018 dqs_0123 e36fa2dc9f3555570f9fc01e62eaebed 215 SUPERFAMILY SSF52833 5 89 6.01E-26 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 SUPERFAMILY SSF81340 5 416 3.53E-86 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 Gene3D G3DSA:1.10.3080.10 10 422 1.3E-82 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 Pfam PF00654 Voltage gated chloride channel 58 401 5.9E-80 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 PRINTS PR00762 Chloride channel signature 105 124 2.0E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 PRINTS PR00762 Chloride channel signature 370 389 2.0E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 PRINTS PR00762 Chloride channel signature 71 88 2.0E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 PRINTS PR00762 Chloride channel signature 323 343 2.0E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 PRINTS PR00762 Chloride channel signature 352 368 2.0E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 dqs_1550 1a9c2e607fca8f5314c09d2b9d1815ce 440 PRINTS PR00762 Chloride channel signature 156 175 2.0E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 dqs_0266 131cf2686b7a0593aa7e196be2088627 236 SUPERFAMILY SSF53335 30 217 1.27E-16 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0266 131cf2686b7a0593aa7e196be2088627 236 Gene3D G3DSA:3.40.50.150 15 230 1.3E-15 T 11-10-2018 dqs_0571 aaea292b51ac117867de95515881cb92 464 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 19 434 3.3E-108 T 11-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 dqs_0571 aaea292b51ac117867de95515881cb92 464 Gene3D G3DSA:3.40.50.1980 166 288 2.1E-37 T 11-10-2018 dqs_0571 aaea292b51ac117867de95515881cb92 464 Gene3D G3DSA:3.40.50.1980 19 161 8.9E-37 T 11-10-2018 dqs_0571 aaea292b51ac117867de95515881cb92 464 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 2 436 6.0E-175 T 11-10-2018 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0009399|GO:0065003 dqs_0571 aaea292b51ac117867de95515881cb92 464 SUPERFAMILY SSF53807 8 447 3.92E-118 T 11-10-2018 dqs_0571 aaea292b51ac117867de95515881cb92 464 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 37 44 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 dqs_0571 aaea292b51ac117867de95515881cb92 464 Gene3D G3DSA:3.40.50.1980 315 438 7.7E-33 T 11-10-2018 dqs_3555 9dc65544008c8ffe7c91a0b5fb8d7cda 206 SUPERFAMILY SSF52166 1 205 6.54E-66 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3555 9dc65544008c8ffe7c91a0b5fb8d7cda 206 Gene3D G3DSA:3.40.1370.10 4 206 1.8E-59 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 dqs_3555 9dc65544008c8ffe7c91a0b5fb8d7cda 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 30.228 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3555 9dc65544008c8ffe7c91a0b5fb8d7cda 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 19 203 1.7E-65 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3555 9dc65544008c8ffe7c91a0b5fb8d7cda 206 Pfam PF00573 Ribosomal protein L4/L1 family 19 203 5.3E-57 T 11-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 dqs_2432 57cccb82c36f1f4bcb59b99eb5e7c5f7 547 SUPERFAMILY SSF56645 60 274 6.48E-33 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_2432 57cccb82c36f1f4bcb59b99eb5e7c5f7 547 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 180 192 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 dqs_2432 57cccb82c36f1f4bcb59b99eb5e7c5f7 547 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 441 2.2E-32 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_2432 57cccb82c36f1f4bcb59b99eb5e7c5f7 547 SUPERFAMILY SSF47203 289 444 1.34E-41 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_2432 57cccb82c36f1f4bcb59b99eb5e7c5f7 547 Gene3D G3DSA:2.40.110.20 128 278 5.9E-50 T 11-10-2018 dqs_2432 57cccb82c36f1f4bcb59b99eb5e7c5f7 547 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 400 419 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 dqs_2432 57cccb82c36f1f4bcb59b99eb5e7c5f7 547 Gene3D G3DSA:1.20.140.10 279 453 1.0E-40 T 11-10-2018 dqs_2432 57cccb82c36f1f4bcb59b99eb5e7c5f7 547 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 178 272 4.1E-16 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 dqs_2878 29e7de1212aa4e78e081e5ffc3a36c30 159 SUPERFAMILY SSF140566 10 131 6.28E-23 T 11-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 dqs_2878 29e7de1212aa4e78e081e5ffc3a36c30 159 Pfam PF05130 FlgN protein 8 148 1.8E-29 T 11-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 dqs_2878 29e7de1212aa4e78e081e5ffc3a36c30 159 Gene3D G3DSA:1.20.58.300 11 131 4.7E-24 T 11-10-2018 dqs_2342 38a605acee586cd518b71ec5aeb3e10e 246 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 8 235 41.308 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 dqs_2342 38a605acee586cd518b71ec5aeb3e10e 246 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 108 227 2.0E-39 T 11-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 dqs_2342 38a605acee586cd518b71ec5aeb3e10e 246 PIRSF PIRSF037208 1 243 1.7E-92 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 dqs_2342 38a605acee586cd518b71ec5aeb3e10e 246 SUPERFAMILY SSF55729 82 237 2.01E-15 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_2342 38a605acee586cd518b71ec5aeb3e10e 246 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 18 88 2.0E-20 T 11-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 dqs_1866 f68219c183c1706c16939309af613c28 456 Gene3D G3DSA:3.40.50.300 57 273 2.0E-39 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 360 451 1.9E-7 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 dqs_1866 f68219c183c1706c16939309af613c28 456 SUPERFAMILY SSF52540 66 288 6.77E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1866 f68219c183c1706c16939309af613c28 456 Hamap MF_01498 DNA repair protein RadA [radA]. 21 453 43.566 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 dqs_1866 f68219c183c1706c16939309af613c28 456 Gene3D G3DSA:3.30.230.10 325 456 2.7E-18 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_1866 f68219c183c1706c16939309af613c28 456 PRINTS PR01874 DNA repair protein radA signature 10 34 8.1E-94 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 PRINTS PR01874 DNA repair protein radA signature 172 196 8.1E-94 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 PRINTS PR01874 DNA repair protein radA signature 81 109 8.1E-94 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 PRINTS PR01874 DNA repair protein radA signature 211 239 8.1E-94 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 PRINTS PR01874 DNA repair protein radA signature 246 272 8.1E-94 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 PRINTS PR01874 DNA repair protein radA signature 122 139 8.1E-94 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 PRINTS PR01874 DNA repair protein radA signature 320 343 8.1E-94 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 449 9.5E-195 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 dqs_1866 f68219c183c1706c16939309af613c28 456 SMART SM00382 89 242 9.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1866 f68219c183c1706c16939309af613c28 456 Pfam PF13481 AAA domain 82 220 6.1E-14 T 11-10-2018 dqs_1866 f68219c183c1706c16939309af613c28 456 SUPERFAMILY SSF54211 253 453 1.1E-40 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_1950 bbf2e01bc884888425a3a2403cebda4f 558 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 8 480 4.6E-164 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 dqs_1950 bbf2e01bc884888425a3a2403cebda4f 558 Gene3D G3DSA:3.40.50.2000 258 466 1.0E-174 T 11-10-2018 dqs_1950 bbf2e01bc884888425a3a2403cebda4f 558 SUPERFAMILY SSF53756 8 484 1.43E-120 T 11-10-2018 dqs_1950 bbf2e01bc884888425a3a2403cebda4f 558 Pfam PF00534 Glycosyl transferases group 1 297 451 7.3E-15 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_1950 bbf2e01bc884888425a3a2403cebda4f 558 Pfam PF08323 Starch synthase catalytic domain 8 244 3.3E-71 T 11-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 dqs_1950 bbf2e01bc884888425a3a2403cebda4f 558 Gene3D G3DSA:3.40.50.2000 9 479 1.0E-174 T 11-10-2018 dqs_1950 bbf2e01bc884888425a3a2403cebda4f 558 Hamap MF_00484 Glycogen synthase [glgA]. 7 482 42.622 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 dqs_0234 feb98152eba1368891f7c6e7a1e03e94 286 SUPERFAMILY SSF161098 83 269 1.26E-19 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0234 feb98152eba1368891f7c6e7a1e03e94 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 279 2.4E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_0234 feb98152eba1368891f7c6e7a1e03e94 286 Gene3D G3DSA:1.10.3720.10 77 280 3.9E-16 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3809 5175e23fe3053b325e241aed77d22c46 260 SUPERFAMILY SSF56219 2 257 7.46E-75 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_3809 5175e23fe3053b325e241aed77d22c46 260 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 2 254 2.6E-69 T 11-10-2018 dqs_3809 5175e23fe3053b325e241aed77d22c46 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 249 5.1E-21 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase dqs_3809 5175e23fe3053b325e241aed77d22c46 260 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 29 38 - T 11-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 dqs_3809 5175e23fe3053b325e241aed77d22c46 260 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 2 256 6.0E-77 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 dqs_3809 5175e23fe3053b325e241aed77d22c46 260 Gene3D G3DSA:3.60.10.10 1 258 2.9E-84 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_0117 dc08fa99e3ddebc111ff7124b526279a 238 Hamap MF_02088 Probable queuosine precursor transporter. 8 224 17.301 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 dqs_0117 dc08fa99e3ddebc111ff7124b526279a 238 Pfam PF02592 Putative vitamin uptake transporter 51 211 1.3E-48 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 dqs_0117 dc08fa99e3ddebc111ff7124b526279a 238 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 18 218 7.4E-32 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 dqs_2670 be730e4d5cb96ec0d8684b1b1e4f98dd 184 Pfam PF04542 Sigma-70 region 2 13 78 1.3E-15 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_2670 be730e4d5cb96ec0d8684b1b1e4f98dd 184 Pfam PF08281 Sigma-70, region 4 111 162 3.5E-11 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_2670 be730e4d5cb96ec0d8684b1b1e4f98dd 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 160 1.6E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_2670 be730e4d5cb96ec0d8684b1b1e4f98dd 184 SUPERFAMILY SSF88946 10 96 1.69E-16 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_2670 be730e4d5cb96ec0d8684b1b1e4f98dd 184 Gene3D G3DSA:1.10.1740.10 5 76 5.0E-12 T 11-10-2018 dqs_2670 be730e4d5cb96ec0d8684b1b1e4f98dd 184 Gene3D G3DSA:1.10.10.10 86 171 9.2E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2670 be730e4d5cb96ec0d8684b1b1e4f98dd 184 SUPERFAMILY SSF88659 90 165 1.78E-10 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_0505 e9fe3fffb7ddd8b21b62c79086cbb375 322 Gene3D G3DSA:3.40.50.720 5 300 1.9E-51 T 11-10-2018 dqs_0505 e9fe3fffb7ddd8b21b62c79086cbb375 322 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 208 1.4E-19 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 dqs_0505 e9fe3fffb7ddd8b21b62c79086cbb375 322 SUPERFAMILY SSF51735 1 276 1.45E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2950 3a43c722626236a15ab60d379cfbbf9f 90 Gene3D G3DSA:3.40.30.10 1 88 1.4E-24 T 11-10-2018 dqs_2950 3a43c722626236a15ab60d379cfbbf9f 90 SUPERFAMILY SSF52833 2 87 5.62E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2950 3a43c722626236a15ab60d379cfbbf9f 90 Pfam PF00462 Glutaredoxin 8 66 1.4E-18 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 dqs_2950 3a43c722626236a15ab60d379cfbbf9f 90 PRINTS PR00160 Glutaredoxin signature 49 62 1.1E-16 T 11-10-2018 IPR014025 Glutaredoxin subgroup dqs_2950 3a43c722626236a15ab60d379cfbbf9f 90 PRINTS PR00160 Glutaredoxin signature 6 24 1.1E-16 T 11-10-2018 IPR014025 Glutaredoxin subgroup dqs_2950 3a43c722626236a15ab60d379cfbbf9f 90 PRINTS PR00160 Glutaredoxin signature 63 76 1.1E-16 T 11-10-2018 IPR014025 Glutaredoxin subgroup dqs_2950 3a43c722626236a15ab60d379cfbbf9f 90 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 6 85 2.0E-34 T 11-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 dqs_2950 3a43c722626236a15ab60d379cfbbf9f 90 ProSitePatterns PS00195 Glutaredoxin active site. 8 24 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 dqs_3256 9d29c211d8aeddfc79a3c319988ca33d 213 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 131 154 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_3256 9d29c211d8aeddfc79a3c319988ca33d 213 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 188 3.6E-72 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 dqs_3256 9d29c211d8aeddfc79a3c319988ca33d 213 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 185 31.851 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 dqs_3256 9d29c211d8aeddfc79a3c319988ca33d 213 Gene3D G3DSA:3.40.50.170 1 205 1.2E-78 T 11-10-2018 dqs_3256 9d29c211d8aeddfc79a3c319988ca33d 213 SUPERFAMILY SSF53328 4 193 5.76E-65 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_3256 9d29c211d8aeddfc79a3c319988ca33d 213 Pfam PF00551 Formyl transferase 3 179 8.5E-57 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 dqs_3141 76afa32bbf43133b1c1fdd2775b05abf 250 Pfam PF01012 Electron transfer flavoprotein domain 26 206 1.5E-39 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_3141 76afa32bbf43133b1c1fdd2775b05abf 250 SUPERFAMILY SSF52402 1 243 2.79E-66 T 11-10-2018 dqs_3141 76afa32bbf43133b1c1fdd2775b05abf 250 Gene3D G3DSA:3.40.50.620 1 245 4.7E-73 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3141 76afa32bbf43133b1c1fdd2775b05abf 250 PIRSF PIRSF000090 1 247 2.4E-67 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_3141 76afa32bbf43133b1c1fdd2775b05abf 250 SMART SM00893 23 211 4.8E-42 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2150 b496194d655f5003918267d081bda9c2 257 Gene3D G3DSA:3.40.225.10 11 254 5.3E-57 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily dqs_2150 b496194d655f5003918267d081bda9c2 257 SMART SM01007 24 204 1.1E-53 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal dqs_2150 b496194d655f5003918267d081bda9c2 257 SUPERFAMILY SSF53639 18 225 1.2E-48 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily dqs_2150 b496194d655f5003918267d081bda9c2 257 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 25 203 2.6E-39 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal dqs_1521 419d8c507dc78f0e04c3cae86029b3e9 158 Gene3D G3DSA:3.40.50.12280 2 158 4.3E-78 T 11-10-2018 dqs_1521 419d8c507dc78f0e04c3cae86029b3e9 158 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 151 42.17 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1521 419d8c507dc78f0e04c3cae86029b3e9 158 SUPERFAMILY SSF56770 9 153 1.44E-66 T 11-10-2018 dqs_1521 419d8c507dc78f0e04c3cae86029b3e9 158 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1521 419d8c507dc78f0e04c3cae86029b3e9 158 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 152 1.5E-77 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1521 419d8c507dc78f0e04c3cae86029b3e9 158 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 38 145 1.4E-21 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_2101 f437e9b9d8980cd219ff59a7e0dc6a24 908 Pfam PF00384 Molybdopterin oxidoreductase 65 622 3.5E-22 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_2101 f437e9b9d8980cd219ff59a7e0dc6a24 908 SUPERFAMILY SSF53706 4 615 2.09E-104 T 11-10-2018 dqs_2101 f437e9b9d8980cd219ff59a7e0dc6a24 908 Pfam PF01568 Molydopterin dinucleotide binding domain 801 889 2.8E-10 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_2101 f437e9b9d8980cd219ff59a7e0dc6a24 908 Gene3D G3DSA:3.40.228.10 167 471 9.0E-43 T 11-10-2018 dqs_2101 f437e9b9d8980cd219ff59a7e0dc6a24 908 Gene3D G3DSA:2.40.40.20 746 907 1.4E-19 T 11-10-2018 dqs_2101 f437e9b9d8980cd219ff59a7e0dc6a24 908 Gene3D G3DSA:3.40.50.740 65 166 8.8E-11 T 11-10-2018 dqs_2101 f437e9b9d8980cd219ff59a7e0dc6a24 908 Gene3D G3DSA:3.40.50.740 494 657 1.2E-18 T 11-10-2018 dqs_2101 f437e9b9d8980cd219ff59a7e0dc6a24 908 SUPERFAMILY SSF50692 774 905 1.06E-18 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_3908 7372d1b1f4608f61de4a6a8fe03036b3 418 Gene3D G3DSA:3.40.50.150 25 226 7.9E-34 T 11-10-2018 dqs_3908 7372d1b1f4608f61de4a6a8fe03036b3 418 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 23 39 5.9E-20 T 11-10-2018 dqs_3908 7372d1b1f4608f61de4a6a8fe03036b3 418 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 125 149 5.9E-20 T 11-10-2018 dqs_3908 7372d1b1f4608f61de4a6a8fe03036b3 418 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 90 102 5.9E-20 T 11-10-2018 dqs_3908 7372d1b1f4608f61de4a6a8fe03036b3 418 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 45 59 5.9E-20 T 11-10-2018 dqs_3908 7372d1b1f4608f61de4a6a8fe03036b3 418 Pfam PF07669 Eco57I restriction-modification methylase 89 186 2.0E-7 T 11-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 dqs_3908 7372d1b1f4608f61de4a6a8fe03036b3 418 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 93 99 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 dqs_3908 7372d1b1f4608f61de4a6a8fe03036b3 418 SUPERFAMILY SSF53335 21 206 4.07E-31 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3683 833e5a9d9f4964e2ca2c74a83188c2b8 504 SMART SM00345 23 82 6.3E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_3683 833e5a9d9f4964e2ca2c74a83188c2b8 504 Gene3D G3DSA:3.90.1150.10 123 483 1.2E-95 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3683 833e5a9d9f4964e2ca2c74a83188c2b8 504 SUPERFAMILY SSF53383 106 485 1.6E-85 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_3683 833e5a9d9f4964e2ca2c74a83188c2b8 504 Gene3D G3DSA:3.40.640.10 161 380 1.2E-95 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_3683 833e5a9d9f4964e2ca2c74a83188c2b8 504 SUPERFAMILY SSF46785 13 85 9.09E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3683 833e5a9d9f4964e2ca2c74a83188c2b8 504 Gene3D G3DSA:1.10.10.10 14 84 5.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3683 833e5a9d9f4964e2ca2c74a83188c2b8 504 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 5.1E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_3683 833e5a9d9f4964e2ca2c74a83188c2b8 504 Pfam PF00155 Aminotransferase class I and II 140 465 1.3E-23 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 Gene3D G3DSA:3.20.20.450 431 683 1.3E-100 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 SMART SM00267 246 419 2.2E-63 T 11-10-2018 IPR000160 GGDEF domain dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 SUPERFAMILY SSF141868 436 681 2.88E-89 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 Pfam PF00563 EAL domain 436 670 6.4E-74 T 11-10-2018 IPR001633 EAL domain dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 SMART SM00052 429 675 4.0E-106 T 11-10-2018 IPR001633 EAL domain dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 SUPERFAMILY SSF55073 263 421 5.89E-53 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 Pfam PF00990 Diguanylate cyclase, GGDEF domain 258 414 2.7E-50 T 11-10-2018 IPR000160 GGDEF domain dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 257 418 6.4E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_2820 e23d4564b6953a61fc5d474086dbbac0 691 Gene3D G3DSA:3.30.70.270 252 430 1.9E-60 T 11-10-2018 dqs_2455 932b95f4554a1e0ea4e1465b5dbc217b 148 Gene3D G3DSA:3.30.530.20 3 148 6.5E-40 T 11-10-2018 IPR023393 START-like domain superfamily dqs_2455 932b95f4554a1e0ea4e1465b5dbc217b 148 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 143 7.0E-27 T 11-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like dqs_2455 932b95f4554a1e0ea4e1465b5dbc217b 148 SUPERFAMILY SSF55961 1 144 1.7E-41 T 11-10-2018 dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 SUPERFAMILY SSF55073 181 334 7.06E-47 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 Gene3D G3DSA:3.30.70.270 170 339 8.9E-55 T 11-10-2018 dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 Gene3D G3DSA:3.30.450.20 2 158 1.7E-25 T 11-10-2018 dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 SUPERFAMILY SSF55785 5 117 1.61E-25 T 11-10-2018 IPR035965 PAS domain superfamily dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 Pfam PF00990 Diguanylate cyclase, GGDEF domain 176 328 9.1E-40 T 11-10-2018 IPR000160 GGDEF domain dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 4 121 1.4E-20 T 11-10-2018 IPR000014 PAS domain dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 173 332 7.3E-41 T 11-10-2018 IPR000160 GGDEF domain dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 Pfam PF08448 PAS fold 12 120 3.0E-14 T 11-10-2018 IPR013656 PAS fold-4 dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 SMART SM00267 165 333 3.3E-61 T 11-10-2018 IPR000160 GGDEF domain dqs_3005 83fe9ef90567e1f6c8d78b106dea3d7a 342 SMART SM00091 6 72 1.0E-13 T 11-10-2018 IPR000014 PAS domain dqs_2415 c9d5a6e5885752fbc0f1d41ac3e6ccb4 216 SUPERFAMILY SSF52833 4 215 7.38E-42 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2415 c9d5a6e5885752fbc0f1d41ac3e6ccb4 216 Pfam PF01323 DSBA-like thioredoxin domain 5 205 8.5E-28 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 dqs_2415 c9d5a6e5885752fbc0f1d41ac3e6ccb4 216 Gene3D G3DSA:3.40.30.10 1 214 1.2E-60 T 11-10-2018 dqs_2918 a7cc60df314962e544db1fc978355c3c 194 SUPERFAMILY SSF51197 4 190 7.69E-55 T 11-10-2018 dqs_2918 a7cc60df314962e544db1fc978355c3c 194 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 16 188 2.1E-26 T 11-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like dqs_2918 a7cc60df314962e544db1fc978355c3c 194 Gene3D G3DSA:2.60.120.590 6 192 3.9E-58 T 11-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily dqs_1173 619e8d926d89986104eeafb15e44aefd 81 Pfam PF09791 Oxidoreductase-like protein, N-terminal 34 75 9.7E-13 T 11-10-2018 IPR019180 Oxidoreductase-like, N-terminal dqs_3864 da3e612a699f357a2e9df9bb4821c944 138 Gene3D G3DSA:3.10.180.10 22 136 3.7E-18 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3864 da3e612a699f357a2e9df9bb4821c944 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 21 133 5.5E-5 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_3864 da3e612a699f357a2e9df9bb4821c944 138 SUPERFAMILY SSF54593 21 137 3.03E-17 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2347 369f122952995524f64eaec6ebf54b11 521 ProSitePatterns PS00211 ABC transporters family signature. 405 419 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2347 369f122952995524f64eaec6ebf54b11 521 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2347 369f122952995524f64eaec6ebf54b11 521 Pfam PF00005 ABC transporter 26 170 3.0E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2347 369f122952995524f64eaec6ebf54b11 521 SMART SM00382 34 226 8.9E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2347 369f122952995524f64eaec6ebf54b11 521 Gene3D G3DSA:3.40.50.300 3 235 2.4E-61 T 11-10-2018 dqs_2347 369f122952995524f64eaec6ebf54b11 521 Pfam PF00005 ABC transporter 275 432 6.1E-6 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2347 369f122952995524f64eaec6ebf54b11 521 Gene3D G3DSA:3.40.50.300 267 496 1.9E-29 T 11-10-2018 dqs_2347 369f122952995524f64eaec6ebf54b11 521 SUPERFAMILY SSF52540 9 227 8.28E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2347 369f122952995524f64eaec6ebf54b11 521 SUPERFAMILY SSF52540 275 482 7.85E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2297 ee7b2bd4e4291f5a8c1e327597cd5200 141 Pfam PF04519 Polymer-forming cytoskeletal 17 117 1.2E-23 T 11-10-2018 IPR007607 Bactofilin A/B dqs_3656 8d0fa56a95242230b239b52621ca6bf9 259 SMART SM00382 30 218 9.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3656 8d0fa56a95242230b239b52621ca6bf9 259 Pfam PF00005 ABC transporter 22 167 2.1E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3656 8d0fa56a95242230b239b52621ca6bf9 259 SUPERFAMILY SSF52540 4 237 6.15E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3656 8d0fa56a95242230b239b52621ca6bf9 259 Gene3D G3DSA:3.40.50.300 2 256 7.3E-61 T 11-10-2018 dqs_3656 8d0fa56a95242230b239b52621ca6bf9 259 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0023 6d6efbef14028d265095ca4ed1284308 214 Pfam PF00849 RNA pseudouridylate synthase 15 163 1.0E-28 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_0023 6d6efbef14028d265095ca4ed1284308 214 SUPERFAMILY SSF55120 8 214 1.76E-56 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_0023 6d6efbef14028d265095ca4ed1284308 214 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 52 66 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_0023 6d6efbef14028d265095ca4ed1284308 214 Gene3D G3DSA:3.30.2350.10 2 213 7.9E-67 T 11-10-2018 dqs_1170 4564633eed09bf0d109651e1252ef219 375 Pfam PF00684 DnaJ central domain 147 207 5.0E-14 T 11-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 dqs_1170 4564633eed09bf0d109651e1252ef219 375 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-10-2018 IPR018253 DnaJ domain, conserved site dqs_1170 4564633eed09bf0d109651e1252ef219 375 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 43.087 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 dqs_1170 4564633eed09bf0d109651e1252ef219 375 Gene3D G3DSA:1.10.287.110 1 114 1.6E-38 T 11-10-2018 IPR036869 Chaperone J-domain superfamily dqs_1170 4564633eed09bf0d109651e1252ef219 375 SMART SM00271 4 62 1.7E-32 T 11-10-2018 IPR001623 DnaJ domain dqs_1170 4564633eed09bf0d109651e1252ef219 375 Gene3D G3DSA:2.10.230.10 145 211 1.1E-22 T 11-10-2018 dqs_1170 4564633eed09bf0d109651e1252ef219 375 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 349 7.4E-142 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 dqs_1170 4564633eed09bf0d109651e1252ef219 375 SUPERFAMILY SSF49493 115 257 6.15E-20 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 dqs_1170 4564633eed09bf0d109651e1252ef219 375 SUPERFAMILY SSF46565 1 110 4.84E-38 T 11-10-2018 IPR036869 Chaperone J-domain superfamily dqs_1170 4564633eed09bf0d109651e1252ef219 375 Gene3D G3DSA:2.60.260.20 256 364 1.3E-29 T 11-10-2018 dqs_1170 4564633eed09bf0d109651e1252ef219 375 Pfam PF01556 DnaJ C terminal domain 121 333 3.2E-45 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal dqs_1170 4564633eed09bf0d109651e1252ef219 375 SUPERFAMILY SSF57938 134 211 2.22E-22 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily dqs_1170 4564633eed09bf0d109651e1252ef219 375 SUPERFAMILY SSF49493 258 344 1.44E-22 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 dqs_1170 4564633eed09bf0d109651e1252ef219 375 Pfam PF00226 DnaJ domain 5 67 2.8E-28 T 11-10-2018 IPR001623 DnaJ domain dqs_1170 4564633eed09bf0d109651e1252ef219 375 PRINTS PR00625 DnaJ domain signature 42 62 1.3E-33 T 11-10-2018 IPR001623 DnaJ domain dqs_1170 4564633eed09bf0d109651e1252ef219 375 PRINTS PR00625 DnaJ domain signature 7 25 1.3E-33 T 11-10-2018 IPR001623 DnaJ domain dqs_1170 4564633eed09bf0d109651e1252ef219 375 PRINTS PR00625 DnaJ domain signature 25 40 1.3E-33 T 11-10-2018 IPR001623 DnaJ domain dqs_1170 4564633eed09bf0d109651e1252ef219 375 PRINTS PR00625 DnaJ domain signature 62 81 1.3E-33 T 11-10-2018 IPR001623 DnaJ domain dqs_0230 33f38534cb98e6fcf93ce0c95a97aa4a 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 106 181 1.5E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_0230 33f38534cb98e6fcf93ce0c95a97aa4a 221 Gene3D G3DSA:3.40.50.1000 6 199 4.7E-44 T 11-10-2018 IPR023214 HAD superfamily dqs_0230 33f38534cb98e6fcf93ce0c95a97aa4a 221 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 6 199 1.5E-49 T 11-10-2018 IPR006328 L-2-Haloacid dehalogenase GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 dqs_0230 33f38534cb98e6fcf93ce0c95a97aa4a 221 SUPERFAMILY SSF56784 5 219 2.87E-40 T 11-10-2018 IPR036412 HAD-like superfamily dqs_0230 33f38534cb98e6fcf93ce0c95a97aa4a 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 92 188 3.1E-9 T 11-10-2018 dqs_0230 33f38534cb98e6fcf93ce0c95a97aa4a 221 Gene3D G3DSA:1.10.150.750 19 92 4.7E-44 T 11-10-2018 dqs_0230 33f38534cb98e6fcf93ce0c95a97aa4a 221 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 7 182 2.5E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_3113 b7fbdb73a2243a387e728370aeb70785 804 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 168 2.1E-14 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_3113 b7fbdb73a2243a387e728370aeb70785 804 Pfam PF00593 TonB dependent receptor 264 801 2.5E-50 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_3113 b7fbdb73a2243a387e728370aeb70785 804 Gene3D G3DSA:2.170.130.10 50 171 2.7E-13 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_3113 b7fbdb73a2243a387e728370aeb70785 804 SUPERFAMILY SSF56935 32 802 4.65E-109 T 11-10-2018 dqs_2441 ae5509261efd57b144a71a731ab5d519 368 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 51 345 1.2E-17 T 11-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 dqs_2441 ae5509261efd57b144a71a731ab5d519 368 SUPERFAMILY SSF51445 4 367 4.09E-98 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_2441 ae5509261efd57b144a71a731ab5d519 368 Gene3D G3DSA:3.20.20.80 1 368 1.1E-103 T 11-10-2018 dqs_2217 700d82c05e584fc9b195a73501a6b9cb 130 PRINTS PR00813 Bacterial general secretion pathway protein G signature 9 34 1.1E-10 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 dqs_2217 700d82c05e584fc9b195a73501a6b9cb 130 PRINTS PR00813 Bacterial general secretion pathway protein G signature 45 63 1.1E-10 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 dqs_2217 700d82c05e584fc9b195a73501a6b9cb 130 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 29 1.4E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2217 700d82c05e584fc9b195a73501a6b9cb 130 Gene3D G3DSA:3.30.700.10 10 119 6.1E-16 T 11-10-2018 dqs_2217 700d82c05e584fc9b195a73501a6b9cb 130 SUPERFAMILY SSF54523 10 128 4.34E-22 T 11-10-2018 dqs_2217 700d82c05e584fc9b195a73501a6b9cb 130 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 30 6.3E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2217 700d82c05e584fc9b195a73501a6b9cb 130 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2307 760a89733af9ed373a0864d37b5018f2 157 Pfam PF00293 NUDIX domain 9 78 9.6E-16 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 dqs_2307 760a89733af9ed373a0864d37b5018f2 157 SUPERFAMILY SSF55811 3 147 1.9E-39 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_2307 760a89733af9ed373a0864d37b5018f2 157 Gene3D G3DSA:3.90.79.10 1 153 1.8E-50 T 11-10-2018 dqs_0991 edfdd4b61dbfc7051858ed9d09a4b68c 334 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 29 312 4.9E-107 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 dqs_0991 edfdd4b61dbfc7051858ed9d09a4b68c 334 Gene3D G3DSA:3.40.190.170 24 325 4.6E-104 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily dqs_0991 edfdd4b61dbfc7051858ed9d09a4b68c 334 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 29 284 1.4E-103 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 dqs_0991 edfdd4b61dbfc7051858ed9d09a4b68c 334 PIRSF PIRSF006470 1 329 1.7E-138 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 dqs_0991 edfdd4b61dbfc7051858ed9d09a4b68c 334 SUPERFAMILY SSF53850 151 275 2.81E-6 T 11-10-2018 dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 SUPERFAMILY SSF51735 9 256 1.84E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 Pfam PF00106 short chain dehydrogenase 18 200 2.2E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 Gene3D G3DSA:3.40.50.720 7 251 2.3E-58 T 11-10-2018 dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 1.1E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.1E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 1.1E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 7.9E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 7.9E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 7.9E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 7.9E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_3453 c531231754fdf3279975d365e1bcf5e2 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 7.9E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 49 219 4.1E-45 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 SUPERFAMILY SSF140490 325 423 4.84E-37 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 Gene3D G3DSA:3.40.50.11540 53 230 1.2E-75 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 SUPERFAMILY SSF142984 241 324 2.75E-27 T 11-10-2018 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 SUPERFAMILY SSF142019 14 240 2.35E-81 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 Gene3D G3DSA:3.10.20.600 232 326 2.7E-37 T 11-10-2018 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 Pfam PF10531 SLBB domain 243 291 2.0E-13 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 SMART SM00928 329 374 2.9E-24 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 342 353 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 331 414 4.4E-28 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 Gene3D G3DSA:1.20.1440.230 327 428 5.7E-32 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1525 0c69f4b77de5d16b4abd38b2178a1eea 439 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 10 415 1.7E-193 T 11-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_4044 f71ec6d3fda3d165edea441144f6d4ac 169 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 12 163 2.8E-20 T 11-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein dqs_4044 f71ec6d3fda3d165edea441144f6d4ac 169 Pfam PF04965 Gene 25-like lysozyme 39 143 1.1E-23 T 11-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD dqs_4044 f71ec6d3fda3d165edea441144f6d4ac 169 SUPERFAMILY SSF160719 73 154 1.96E-8 T 11-10-2018 dqs_1027 f9b9c43803fd9f52a63dafd587c9896b 274 Gene3D G3DSA:3.40.109.10 24 274 6.2E-66 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 dqs_1027 f9b9c43803fd9f52a63dafd587c9896b 274 PIRSF PIRSF005426 22 274 3.7E-81 T 11-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 dqs_1027 f9b9c43803fd9f52a63dafd587c9896b 274 Pfam PF00881 Nitroreductase family 32 185 2.2E-23 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 dqs_1027 f9b9c43803fd9f52a63dafd587c9896b 274 SUPERFAMILY SSF55469 24 273 1.03E-63 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 dqs_1538 98ec112072584ce75a629b24b964a5a3 190 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 26 173 1.1E-29 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1538 98ec112072584ce75a629b24b964a5a3 190 Gene3D G3DSA:3.40.50.700 14 188 1.4E-36 T 11-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily dqs_1538 98ec112072584ce75a629b24b964a5a3 190 SUPERFAMILY SSF56770 15 184 5.89E-37 T 11-10-2018 dqs_2271 3b3966261f2d6522f393a264c27505fb 181 SUPERFAMILY SSF51161 2 169 4.85E-51 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_2271 3b3966261f2d6522f393a264c27505fb 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 45 1.9E-5 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2271 3b3966261f2d6522f393a264c27505fb 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 121 1.5E-9 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_2271 3b3966261f2d6522f393a264c27505fb 181 Gene3D G3DSA:2.160.10.10 1 173 2.3E-65 T 11-10-2018 dqs_3733 bafb504bb9fc63aee3ab988e18bad4fd 118 Pfam PF00893 Small Multidrug Resistance protein 1 106 6.7E-12 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 dqs_3733 bafb504bb9fc63aee3ab988e18bad4fd 118 Gene3D G3DSA:1.10.3730.20 1 117 1.6E-10 T 11-10-2018 dqs_3733 bafb504bb9fc63aee3ab988e18bad4fd 118 SUPERFAMILY SSF103481 37 115 9.81E-13 T 11-10-2018 dqs_1557 b961edf9593b0b31ac975348194336c6 113 Pfam PF00034 Cytochrome c 31 107 9.6E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1557 b961edf9593b0b31ac975348194336c6 113 Gene3D G3DSA:1.10.760.10 29 107 4.1E-26 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1557 b961edf9593b0b31ac975348194336c6 113 SUPERFAMILY SSF46626 10 108 1.33E-23 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 Pfam PF00849 RNA pseudouridylate synthase 62 195 2.4E-16 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 SMART SM00363 1 57 2.6E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 Pfam PF01479 S4 domain 1 44 2.0E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 SUPERFAMILY SSF55174 1 88 1.77E-15 T 11-10-2018 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 225 3.6E-53 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 Gene3D G3DSA:3.30.70.1560 124 214 6.6E-51 T 11-10-2018 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 SUPERFAMILY SSF55120 60 230 2.06E-43 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 Gene3D G3DSA:3.10.290.10 1 52 2.3E-18 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_2242 ab08e7d3c510d488ba71560db9687c3a 264 Gene3D G3DSA:3.30.70.580 64 222 6.6E-51 T 11-10-2018 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 PIRSF PIRSF001327 1 582 8.5E-258 T 11-10-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 Gene3D G3DSA:3.40.50.300 3 294 2.0E-81 T 11-10-2018 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 TIGRFAM TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase 7 570 1.1E-238 T 11-10-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 SUPERFAMILY SSF52540 314 555 2.13E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 Gene3D G3DSA:3.40.50.300 312 582 9.0E-70 T 11-10-2018 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 Pfam PF02374 Anion-transporting ATPase 8 292 2.2E-71 T 11-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 Pfam PF02374 Anion-transporting ATPase 474 581 2.0E-6 T 11-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 Pfam PF02374 Anion-transporting ATPase 328 469 5.8E-31 T 11-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 12 291 4.6E-72 T 11-10-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 dqs_2486 3f1999bc2a412fcd02b5742883a0851e 582 SUPERFAMILY SSF52540 1 285 8.79E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2704 4e534907f6cb7538b5a649913b931464 298 SUPERFAMILY SSF46785 1 86 3.79E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2704 4e534907f6cb7538b5a649913b931464 298 Gene3D G3DSA:3.40.190.290 91 293 5.7E-40 T 11-10-2018 dqs_2704 4e534907f6cb7538b5a649913b931464 298 Gene3D G3DSA:1.10.10.10 1 88 9.1E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2704 4e534907f6cb7538b5a649913b931464 298 Pfam PF03466 LysR substrate binding domain 87 289 3.1E-38 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2704 4e534907f6cb7538b5a649913b931464 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2704 4e534907f6cb7538b5a649913b931464 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2704 4e534907f6cb7538b5a649913b931464 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2704 4e534907f6cb7538b5a649913b931464 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.5E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2704 4e534907f6cb7538b5a649913b931464 298 SUPERFAMILY SSF53850 89 295 6.03E-38 T 11-10-2018 dqs_0977 68dabaef3a51e05ff9c93e8c1e5bce6a 279 Pfam PF08668 HDOD domain 17 209 1.3E-34 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_0977 68dabaef3a51e05ff9c93e8c1e5bce6a 279 Gene3D G3DSA:1.10.3210.10 5 275 2.3E-51 T 11-10-2018 dqs_0977 68dabaef3a51e05ff9c93e8c1e5bce6a 279 SUPERFAMILY SSF109604 7 274 6.59E-52 T 11-10-2018 dqs_3191 7cd6912ad4b9a352a298648426f2cff6 474 TIGRFAM TIGR03225 benzo_boxB: benzoyl-CoA oxygenase, B subunit 3 473 4.7E-277 T 11-10-2018 IPR017635 Benzoyl-CoA oxygenase, B subunit KEGG: 00362+1.14.13.208|MetaCyc: PWY-1361 dqs_3191 7cd6912ad4b9a352a298648426f2cff6 474 SUPERFAMILY SSF47240 106 341 3.08E-49 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_3191 7cd6912ad4b9a352a298648426f2cff6 474 Gene3D G3DSA:1.10.620.20 2 474 9.6E-246 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 dqs_0975 522c07bc9d498044b531804eb18cb18d 624 Pfam PF02355 Protein export membrane protein 429 599 4.9E-19 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial dqs_0975 522c07bc9d498044b531804eb18cb18d 624 Pfam PF13721 SecD export protein N-terminal TM region 1 109 8.5E-33 T 11-10-2018 IPR027398 SecD export protein N-terminal TM domain dqs_0975 522c07bc9d498044b531804eb18cb18d 624 Gene3D G3DSA:1.20.1640.10 455 603 4.7E-8 T 11-10-2018 dqs_0975 522c07bc9d498044b531804eb18cb18d 624 Gene3D G3DSA:3.30.70.3400 231 434 1.3E-56 T 11-10-2018 dqs_0975 522c07bc9d498044b531804eb18cb18d 624 Gene3D G3DSA:3.30.1360.200 287 428 1.3E-56 T 11-10-2018 dqs_0975 522c07bc9d498044b531804eb18cb18d 624 SUPERFAMILY SSF82866 407 605 8.89E-40 T 11-10-2018 dqs_0975 522c07bc9d498044b531804eb18cb18d 624 Pfam PF07549 SecD/SecF GG Motif 122 146 3.4E-6 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site dqs_0975 522c07bc9d498044b531804eb18cb18d 624 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 612 47.078 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 dqs_0975 522c07bc9d498044b531804eb18cb18d 624 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 356 590 6.3E-72 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial dqs_0975 522c07bc9d498044b531804eb18cb18d 624 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 129 597 3.2E-144 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 dqs_3217 db49d3e21d4af68b4a586686b0664f2f 363 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 326 341 3.0E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_3217 db49d3e21d4af68b4a586686b0664f2f 363 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 341 357 3.0E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_3217 db49d3e21d4af68b4a586686b0664f2f 363 Gene3D G3DSA:1.10.10.60 253 362 1.1E-23 T 11-10-2018 dqs_3217 db49d3e21d4af68b4a586686b0664f2f 363 SUPERFAMILY SSF46689 311 359 1.88E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3217 db49d3e21d4af68b4a586686b0664f2f 363 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 42 228 2.2E-55 T 11-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal dqs_3217 db49d3e21d4af68b4a586686b0664f2f 363 Pfam PF12833 Helix-turn-helix domain 281 359 1.1E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_3217 db49d3e21d4af68b4a586686b0664f2f 363 SMART SM00342 275 357 2.1E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0360 184b74b8c7a172d31b96311e7d034c32 431 Pfam PF13449 Esterase-like activity of phytase 65 400 6.4E-58 T 11-10-2018 IPR027372 Phytase-like domain dqs_0014 6b4ccf90429a442d22422614114e3c7a 328 Gene3D G3DSA:3.30.870.10 2 138 3.2E-10 T 11-10-2018 dqs_0014 6b4ccf90429a442d22422614114e3c7a 328 SUPERFAMILY SSF56024 40 141 4.08E-9 T 11-10-2018 dqs_0014 6b4ccf90429a442d22422614114e3c7a 328 Pfam PF13091 PLD-like domain 17 135 8.1E-11 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 dqs_3421 7605ccbd029b66e332d155fd4016d6d5 514 Pfam PF13807 G-rich domain on putative tyrosine kinase 366 446 1.2E-9 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain dqs_3421 7605ccbd029b66e332d155fd4016d6d5 514 TIGRFAM TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily 7 505 1.2E-187 T 11-10-2018 IPR014345 PEP-CTERM locus polysaccharide chain length determinant dqs_1058 cfd08a52e969d6784ff210a320583cab 97 Gene3D G3DSA:3.30.2310.20 1 93 4.4E-14 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily dqs_1058 cfd08a52e969d6784ff210a320583cab 97 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 10 75 1.6E-4 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family dqs_1058 cfd08a52e969d6784ff210a320583cab 97 SUPERFAMILY SSF143011 1 75 1.69E-10 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily dqs_2964 90bfa765b50b71177b44b16445fc8985 414 Pfam PF03453 MoeA N-terminal region (domain I and II) 15 175 2.2E-41 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_2964 90bfa765b50b71177b44b16445fc8985 414 Pfam PF03454 MoeA C-terminal region (domain IV) 340 410 1.1E-22 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_2964 90bfa765b50b71177b44b16445fc8985 414 Gene3D G3DSA:3.40.980.10 183 335 6.5E-142 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily dqs_2964 90bfa765b50b71177b44b16445fc8985 414 Pfam PF00994 Probable molybdopterin binding domain 190 323 1.4E-27 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_2964 90bfa765b50b71177b44b16445fc8985 414 SUPERFAMILY SSF53218 185 329 7.85E-44 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily dqs_2964 90bfa765b50b71177b44b16445fc8985 414 Gene3D G3DSA:3.90.105.10 34 182 6.5E-142 T 11-10-2018 dqs_2964 90bfa765b50b71177b44b16445fc8985 414 SUPERFAMILY SSF63867 337 413 2.88E-24 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_2964 90bfa765b50b71177b44b16445fc8985 414 SUPERFAMILY SSF63882 13 183 2.22E-55 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_2964 90bfa765b50b71177b44b16445fc8985 414 Gene3D G3DSA:2.170.190.11 57 149 6.5E-142 T 11-10-2018 dqs_2964 90bfa765b50b71177b44b16445fc8985 414 SMART SM00852 188 325 1.3E-41 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_2964 90bfa765b50b71177b44b16445fc8985 414 Gene3D G3DSA:2.40.340.10 336 405 6.5E-142 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_2964 90bfa765b50b71177b44b16445fc8985 414 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 185 320 6.1E-31 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_1583 626f20bed3ecf99624ba8d6168c1034c 133 SMART SM00448 6 120 8.7E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1583 626f20bed3ecf99624ba8d6168c1034c 133 SUPERFAMILY SSF52172 5 126 4.7E-38 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1583 626f20bed3ecf99624ba8d6168c1034c 133 Gene3D G3DSA:3.40.50.2300 1 127 9.5E-40 T 11-10-2018 dqs_1583 626f20bed3ecf99624ba8d6168c1034c 133 Pfam PF00072 Response regulator receiver domain 9 120 5.0E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2577 4954cf194ea63b211c3834685c36beb4 264 Gene3D G3DSA:3.40.50.720 2 263 1.1E-73 T 11-10-2018 dqs_2577 4954cf194ea63b211c3834685c36beb4 264 SUPERFAMILY SSF51735 1 260 2.13E-68 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2577 4954cf194ea63b211c3834685c36beb4 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 259 2.8E-43 T 11-10-2018 dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2577 4954cf194ea63b211c3834685c36beb4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1059 a2a680907a7cc46b578be57c4e5de51f 500 Pfam PF02661 Fic/DOC family 325 414 5.8E-15 T 11-10-2018 IPR003812 Fido domain dqs_1059 a2a680907a7cc46b578be57c4e5de51f 500 Gene3D G3DSA:1.10.3290.10 240 463 3.4E-30 T 11-10-2018 IPR036597 Fido-like domain superfamily dqs_1059 a2a680907a7cc46b578be57c4e5de51f 500 SUPERFAMILY SSF140931 324 460 3.4E-26 T 11-10-2018 IPR036597 Fido-like domain superfamily dqs_0181 86d848a62d592dc60d95c2117b9c2118 487 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 9 480 95.291 T 11-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_0181 86d848a62d592dc60d95c2117b9c2118 487 Gene3D G3DSA:3.90.1300.10 1 487 4.6E-205 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_0181 86d848a62d592dc60d95c2117b9c2118 487 Pfam PF01425 Amidase 23 469 2.7E-155 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_0181 86d848a62d592dc60d95c2117b9c2118 487 SUPERFAMILY SSF75304 2 486 1.16E-167 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_0181 86d848a62d592dc60d95c2117b9c2118 487 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 10 480 5.0E-177 T 11-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 dqs_0181 86d848a62d592dc60d95c2117b9c2118 487 ProSitePatterns PS00571 Amidases signature. 149 180 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 dqs_0156 02f792aa4159e8f7c404d360ef156ab4 921 PIRSF PIRSF035905 26 919 2.0E-99 T 11-10-2018 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein dqs_0156 02f792aa4159e8f7c404d360ef156ab4 921 Pfam PF10101 Predicted membrane protein (DUF2339) 156 909 2.5E-164 T 11-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 Gene3D G3DSA:3.50.7.10 190 371 1.5E-176 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 Gene3D G3DSA:1.10.560.10 8 520 1.5E-176 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 SUPERFAMILY SSF48592 6 520 3.5E-64 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 PRINTS PR00298 60kDa chaperonin signature 266 289 2.3E-53 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 PRINTS PR00298 60kDa chaperonin signature 82 109 2.3E-53 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 PRINTS PR00298 60kDa chaperonin signature 26 52 2.3E-53 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 PRINTS PR00298 60kDa chaperonin signature 396 417 2.3E-53 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 PRINTS PR00298 60kDa chaperonin signature 348 373 2.3E-53 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 Gene3D G3DSA:3.30.260.10 136 408 1.5E-176 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 SUPERFAMILY SSF52029 182 373 3.66E-59 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 SUPERFAMILY SSF54849 136 203 6.64E-15 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily dqs_1338 349de844cd102f01ff2b143ee016f3e6 545 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 3.6E-80 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 dqs_2467 c24375a243356ab54deec916126cd5ed 237 Pfam PF01292 Prokaryotic cytochrome b561 7 176 1.1E-18 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 dqs_2467 c24375a243356ab54deec916126cd5ed 237 SUPERFAMILY SSF81342 1 180 4.24E-31 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 dqs_2467 c24375a243356ab54deec916126cd5ed 237 Gene3D G3DSA:1.20.950.20 1 164 2.0E-13 T 11-10-2018 dqs_1994 39e41d51e761ef29d267c5191b1989e9 311 Gene3D G3DSA:3.10.180.10 152 288 1.5E-39 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1994 39e41d51e761ef29d267c5191b1989e9 311 Gene3D G3DSA:3.10.180.10 2 135 6.0E-39 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1994 39e41d51e761ef29d267c5191b1989e9 311 TIGRFAM TIGR03211 catechol_2_3: catechol 2,3 dioxygenase 5 311 7.7E-130 T 11-10-2018 IPR017624 Catechol 2,3 dioxygenase GO:0008198|GO:0018577|GO:0019439|GO:0055114 KEGG: 00361+1.13.11.2|KEGG: 00362+1.13.11.2|KEGG: 00622+1.13.11.2|KEGG: 00643+1.13.11.2|MetaCyc: PWY-5419|MetaCyc: PWY-5641 dqs_1994 39e41d51e761ef29d267c5191b1989e9 311 SUPERFAMILY SSF54593 4 281 1.03E-41 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_1994 39e41d51e761ef29d267c5191b1989e9 311 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 246 267 - T 11-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 dqs_1994 39e41d51e761ef29d267c5191b1989e9 311 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 151 267 3.6E-17 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_3196 2d851c5562f1b6298d511e51a8d387c0 314 PIRSF PIRSF035875 1 298 4.5E-62 T 11-10-2018 IPR017039 Virulence factor BrkB dqs_3196 2d851c5562f1b6298d511e51a8d387c0 314 Pfam PF03631 Virulence factor BrkB 22 276 9.2E-52 T 11-10-2018 IPR017039 Virulence factor BrkB dqs_3196 2d851c5562f1b6298d511e51a8d387c0 314 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 16 274 5.7E-25 T 11-10-2018 IPR017039 Virulence factor BrkB dqs_1558 35ea9ccbb2a75a8b974612139869d31b 143 Pfam PF08897 Domain of unknown function (DUF1841) 6 137 6.1E-57 T 11-10-2018 IPR014993 Protein of unknown function DUF1841 dqs_0681 22af22056644d6e7842341ba6abc2b73 383 Gene3D G3DSA:2.40.30.170 24 276 8.6E-88 T 11-10-2018 dqs_0681 22af22056644d6e7842341ba6abc2b73 383 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 14 295 9.7E-46 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_0681 22af22056644d6e7842341ba6abc2b73 383 Gene3D G3DSA:2.40.420.20 19 359 8.6E-88 T 11-10-2018 dqs_0681 22af22056644d6e7842341ba6abc2b73 383 SUPERFAMILY SSF111369 26 263 2.88E-25 T 11-10-2018 dqs_0681 22af22056644d6e7842341ba6abc2b73 383 Gene3D G3DSA:2.40.50.100 35 197 8.6E-88 T 11-10-2018 dqs_0681 22af22056644d6e7842341ba6abc2b73 383 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 22 269 4.2E-20 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_0681 22af22056644d6e7842341ba6abc2b73 383 Gene3D G3DSA:1.10.287.470 69 160 8.6E-88 T 11-10-2018 dqs_1228 db2080972617f0a6ebce75ad5c360e15 437 SUPERFAMILY SSF51621 6 436 3.23E-152 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 dqs_1228 db2080972617f0a6ebce75ad5c360e15 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 258 436 2.1E-84 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 dqs_1228 db2080972617f0a6ebce75ad5c360e15 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 10 257 2.0E-107 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 dqs_1228 db2080972617f0a6ebce75ad5c360e15 437 Gene3D G3DSA:3.20.20.60 1 419 3.8E-179 T 11-10-2018 dqs_1228 db2080972617f0a6ebce75ad5c360e15 437 ProSitePatterns PS00161 Isocitrate lyase signature. 195 200 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 dqs_1228 db2080972617f0a6ebce75ad5c360e15 437 Pfam PF00463 Isocitrate lyase family 14 257 1.8E-61 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 dqs_1228 db2080972617f0a6ebce75ad5c360e15 437 Pfam PF00463 Isocitrate lyase family 259 436 3.3E-51 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 dqs_1228 db2080972617f0a6ebce75ad5c360e15 437 PIRSF PIRSF001362 1 437 1.8E-214 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 613 50.049 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 Pfam PF03717 Penicillin-binding Protein dimerisation domain 62 235 1.8E-44 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 SUPERFAMILY SSF56601 251 609 1.43E-105 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 Gene3D G3DSA:3.40.710.10 246 613 1.2E-105 T 11-10-2018 dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 SUPERFAMILY SSF56519 53 250 2.88E-48 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 Gene3D G3DSA:3.90.1310.10 62 245 1.5E-44 T 11-10-2018 dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 Gene3D G3DSA:3.30.1390.30 82 157 1.5E-44 T 11-10-2018 dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 17 609 4.3E-237 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 dqs_0186 8a0a270963c39ae097d6e0e363fa5b15 629 Pfam PF00905 Penicillin binding protein transpeptidase domain 268 606 5.3E-80 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 20 310 43.522 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 21 291 1.2E-112 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 Gene3D G3DSA:3.40.50.620 95 238 7.8E-98 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 SUPERFAMILY SSF52374 21 306 2.93E-82 T 11-10-2018 dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 23 256 2.0E-40 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 Gene3D G3DSA:3.40.50.620 21 304 7.8E-98 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 PRINTS PR00987 Glutamyl-tRNA synthetase signature 52 65 1.1E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 PRINTS PR00987 Glutamyl-tRNA synthetase signature 206 214 1.1E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 PRINTS PR00987 Glutamyl-tRNA synthetase signature 190 200 1.1E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_0819 0cd0901b39a9be6d5bbb26183edc2832 313 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 35 1.1E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 dqs_3529 a401bd3ce890a79865d3d46a0a865d2f 131 Gene3D G3DSA:3.90.1030.10 1 116 8.3E-47 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3529 a401bd3ce890a79865d3d46a0a865d2f 131 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.85 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3529 a401bd3ce890a79865d3d46a0a865d2f 131 SUPERFAMILY SSF64263 1 119 2.09E-49 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3529 a401bd3ce890a79865d3d46a0a865d2f 131 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3529 a401bd3ce890a79865d3d46a0a865d2f 131 Pfam PF01196 Ribosomal protein L17 20 115 4.1E-34 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3529 a401bd3ce890a79865d3d46a0a865d2f 131 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 5.3E-45 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_4041 7ac8688a00f13e831a99db43aeff5e82 162 Pfam PF05638 Type VI secretion system effector, Hcp 6 135 6.4E-41 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp dqs_4041 7ac8688a00f13e831a99db43aeff5e82 162 SUPERFAMILY SSF141452 2 157 8.63E-54 T 11-10-2018 IPR036624 Hcp1-like superfamily dqs_4041 7ac8688a00f13e831a99db43aeff5e82 162 Gene3D G3DSA:2.30.110.20 1 159 2.6E-65 T 11-10-2018 IPR036624 Hcp1-like superfamily dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 PRINTS PR00956 Flagellar motor switch protein FliN signature 78 94 4.8E-29 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 PRINTS PR00956 Flagellar motor switch protein FliN signature 95 111 4.8E-29 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 PRINTS PR00956 Flagellar motor switch protein FliN signature 124 139 4.8E-29 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 PRINTS PR00956 Flagellar motor switch protein FliN signature 111 124 4.8E-29 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 76 149 1.8E-32 T 11-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 SUPERFAMILY SSF101801 76 157 1.7E-25 T 11-10-2018 IPR036429 SpoA-like superfamily dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 ProSitePatterns PS00018 EF-hand calcium-binding domain. 3 15 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 78 148 3.6E-25 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) dqs_2859 3dc24247b6d2c35d76a5e56a54381f81 159 Gene3D G3DSA:2.30.330.10 68 159 4.1E-34 T 11-10-2018 IPR036429 SpoA-like superfamily dqs_1296 a9cb33b4c6609752b1da679f956b6f81 398 Pfam PF06181 Urate oxidase N-terminal 5 301 6.1E-134 T 11-10-2018 IPR010389 Urate oxidase N-terminal dqs_1296 a9cb33b4c6609752b1da679f956b6f81 398 SUPERFAMILY SSF46626 295 394 2.55E-8 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1296 a9cb33b4c6609752b1da679f956b6f81 398 SMART SM01235 290 394 4.3E-4 T 11-10-2018 IPR025992 Haem-binding domain dqs_2483 31f8839d113eabba5912ed9439587e06 137 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 7 127 2.7E-20 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I dqs_2483 31f8839d113eabba5912ed9439587e06 137 SUPERFAMILY SSF52788 5 128 2.09E-36 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily dqs_2483 31f8839d113eabba5912ed9439587e06 137 SMART SM00226 5 133 1.4E-25 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I dqs_2483 31f8839d113eabba5912ed9439587e06 137 Gene3D G3DSA:3.40.50.2300 3 130 2.6E-36 T 11-10-2018 dqs_2482 a93bc753ab8ee3c42ab0d343af3baba0 119 SUPERFAMILY SSF46785 2 93 8.71E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2482 a93bc753ab8ee3c42ab0d343af3baba0 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 7.8E-7 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2482 a93bc753ab8ee3c42ab0d343af3baba0 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 7.8E-7 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2482 a93bc753ab8ee3c42ab0d343af3baba0 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 7.8E-7 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_2482 a93bc753ab8ee3c42ab0d343af3baba0 119 Gene3D G3DSA:1.10.10.10 2 96 7.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2482 a93bc753ab8ee3c42ab0d343af3baba0 119 Pfam PF12840 Helix-turn-helix domain 7 69 1.2E-13 T 11-10-2018 dqs_2482 a93bc753ab8ee3c42ab0d343af3baba0 119 SMART SM00418 8 85 4.2E-11 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_1355 edfdeca0b8104bbb032a9b98d0e19c33 476 Pfam PF04055 Radical SAM superfamily 108 272 1.1E-11 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_1355 edfdeca0b8104bbb032a9b98d0e19c33 476 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 108 119 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_1355 edfdeca0b8104bbb032a9b98d0e19c33 476 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 353 441 1.1E-12 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain dqs_1355 edfdeca0b8104bbb032a9b98d0e19c33 476 Pfam PF13353 4Fe-4S single cluster domain 110 220 2.4E-11 T 11-10-2018 dqs_1355 edfdeca0b8104bbb032a9b98d0e19c33 476 SUPERFAMILY SSF102114 99 422 7.32E-45 T 11-10-2018 dqs_1355 edfdeca0b8104bbb032a9b98d0e19c33 476 TIGRFAM TIGR03906 quino_hemo_SAM: quinohemoprotein amine dehydrogenase maturation protein 10 474 1.7E-222 T 11-10-2018 IPR023886 Quinohemoprotein amine dehydrogenase, gamma subunit maturation protein dqs_1355 edfdeca0b8104bbb032a9b98d0e19c33 476 Gene3D G3DSA:3.20.20.70 99 459 5.3E-65 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3061 6bba155c70bab2292a42a910e0abdebb 170 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 15 163 6.9E-59 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_3061 6bba155c70bab2292a42a910e0abdebb 170 Gene3D G3DSA:3.30.70.640 12 169 1.7E-65 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_3061 6bba155c70bab2292a42a910e0abdebb 170 Pfam PF01967 MoaC family 26 161 1.0E-52 T 11-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_3061 6bba155c70bab2292a42a910e0abdebb 170 SUPERFAMILY SSF55040 22 166 2.35E-59 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_3061 6bba155c70bab2292a42a910e0abdebb 170 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 13 169 35.49 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_2022 6e4d7437b04be43e3b5734572f972dae 364 SUPERFAMILY SSF52540 4 126 2.29E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2022 6e4d7437b04be43e3b5734572f972dae 364 Pfam PF05707 Zonular occludens toxin (Zot) 1 195 2.7E-26 T 11-10-2018 IPR008900 Zona occludens toxin dqs_2022 6e4d7437b04be43e3b5734572f972dae 364 Gene3D G3DSA:3.40.50.300 1 196 1.3E-47 T 11-10-2018 dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 Pfam PF00970 Oxidoreductase FAD-binding domain 46 143 1.8E-7 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 Pfam PF00175 Oxidoreductase NAD-binding domain 154 255 2.1E-15 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 Gene3D G3DSA:3.40.50.80 146 277 2.3E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 PRINTS PR00409 Phthalate dioxygenase reductase family signature 67 77 2.9E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 PRINTS PR00409 Phthalate dioxygenase reductase family signature 153 172 2.9E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 PRINTS PR00409 Phthalate dioxygenase reductase family signature 131 145 2.9E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 295 359 6.7E-5 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 SUPERFAMILY SSF63380 41 143 6.01E-20 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 Gene3D G3DSA:3.10.20.30 278 367 1.1E-12 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 SUPERFAMILY SSF54292 267 366 6.16E-18 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 SUPERFAMILY SSF52343 148 279 3.4E-33 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_1977 1b8c61cdd21161755d13c4c1071c0d65 368 Gene3D G3DSA:2.40.30.10 40 145 7.1E-18 T 11-10-2018 dqs_2489 599243e50b73ad2149d552ab78bcac94 126 Gene3D G3DSA:3.30.429.10 2 126 3.0E-46 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_2489 599243e50b73ad2149d552ab78bcac94 126 SUPERFAMILY SSF55331 2 125 2.24E-45 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_2489 599243e50b73ad2149d552ab78bcac94 126 Pfam PF14552 Tautomerase enzyme 39 119 3.7E-33 T 11-10-2018 IPR037479 Tautomerase, MSAD family dqs_3948 08a82de8c412356c5ae9b755fc5c5d0e 70 Gene3D G3DSA:2.20.28.10 16 70 2.8E-21 T 11-10-2018 dqs_3948 08a82de8c412356c5ae9b755fc5c5d0e 70 SUPERFAMILY SSF57802 18 68 2.17E-18 T 11-10-2018 dqs_3948 08a82de8c412356c5ae9b755fc5c5d0e 70 Pfam PF00301 Rubredoxin 19 64 4.6E-21 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_3948 08a82de8c412356c5ae9b755fc5c5d0e 70 PRINTS PR00163 Rubredoxin signature 48 64 2.6E-9 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_3948 08a82de8c412356c5ae9b755fc5c5d0e 70 PRINTS PR00163 Rubredoxin signature 18 34 2.6E-9 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 dqs_0446 d441085032d2d9213d60a6643bfc20ba 294 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 269 291 5.6E-4 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_0446 d441085032d2d9213d60a6643bfc20ba 294 Pfam PF07589 PEP-CTERM motif 269 291 2.2E-5 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_0679 cddb4f642d4109530b04b06f9083f80e 473 SUPERFAMILY SSF56954 6 463 4.84E-109 T 11-10-2018 dqs_0679 cddb4f642d4109530b04b06f9083f80e 473 Pfam PF02321 Outer membrane efflux protein 64 253 3.1E-30 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0679 cddb4f642d4109530b04b06f9083f80e 473 Pfam PF02321 Outer membrane efflux protein 280 460 3.2E-26 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0679 cddb4f642d4109530b04b06f9083f80e 473 Gene3D G3DSA:1.20.1600.10 54 463 1.8E-128 T 11-10-2018 dqs_0679 cddb4f642d4109530b04b06f9083f80e 473 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 462 1.5E-110 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 dqs_0679 cddb4f642d4109530b04b06f9083f80e 473 Gene3D G3DSA:2.20.200.10 101 351 1.8E-128 T 11-10-2018 dqs_3446 be24e3ef1440524dfe187acd06da6096 306 Gene3D G3DSA:3.40.50.280 175 299 7.5E-19 T 11-10-2018 dqs_3446 be24e3ef1440524dfe187acd06da6096 306 SMART SM00422 8 82 0.0024 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_3446 be24e3ef1440524dfe187acd06da6096 306 Gene3D G3DSA:1.10.1240.10 95 170 4.4E-9 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3446 be24e3ef1440524dfe187acd06da6096 306 Gene3D G3DSA:1.10.1660.10 4 75 5.1E-20 T 11-10-2018 dqs_3446 be24e3ef1440524dfe187acd06da6096 306 Pfam PF02310 B12 binding domain 180 288 1.5E-8 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_3446 be24e3ef1440524dfe187acd06da6096 306 SUPERFAMILY SSF52242 177 271 1.26E-14 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_3446 be24e3ef1440524dfe187acd06da6096 306 SUPERFAMILY SSF46955 8 73 1.19E-12 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_3446 be24e3ef1440524dfe187acd06da6096 306 Pfam PF13411 MerR HTH family regulatory protein 10 70 1.2E-12 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_0284 b2ad23b6252873c3b6f1ef60532005b0 528 SMART SM00729 188 398 1.3E-27 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_0284 b2ad23b6252873c3b6f1ef60532005b0 528 SUPERFAMILY SSF102114 150 432 4.19E-43 T 11-10-2018 dqs_0284 b2ad23b6252873c3b6f1ef60532005b0 528 Pfam PF04055 Radical SAM superfamily 193 354 9.1E-23 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_0284 b2ad23b6252873c3b6f1ef60532005b0 528 Pfam PF02310 B12 binding domain 10 126 5.5E-21 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 dqs_0284 b2ad23b6252873c3b6f1ef60532005b0 528 Gene3D G3DSA:3.80.30.20 186 388 1.4E-23 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe dqs_3852 3b00e0a737ae3413b133917f51f454f1 108 Gene3D G3DSA:3.30.70.100 1 90 1.4E-15 T 11-10-2018 dqs_3852 3b00e0a737ae3413b133917f51f454f1 108 SUPERFAMILY SSF54909 1 96 1.42E-18 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_3186 a64526585ca98fbf76666531fd76561e 532 Gene3D G3DSA:1.10.10.2900 255 325 1.3E-31 T 11-10-2018 dqs_3186 a64526585ca98fbf76666531fd76561e 532 Pfam PF00501 AMP-binding enzyme 35 434 5.8E-88 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_3186 a64526585ca98fbf76666531fd76561e 532 Pfam PF13193 AMP-binding enzyme C-terminal domain 442 520 9.0E-21 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_3186 a64526585ca98fbf76666531fd76561e 532 Gene3D G3DSA:3.40.50.980 17 254 1.2E-59 T 11-10-2018 dqs_3186 a64526585ca98fbf76666531fd76561e 532 Gene3D G3DSA:2.30.38.10 326 433 2.7E-37 T 11-10-2018 dqs_3186 a64526585ca98fbf76666531fd76561e 532 Gene3D G3DSA:3.30.300.310 434 532 4.5E-28 T 11-10-2018 dqs_3186 a64526585ca98fbf76666531fd76561e 532 SUPERFAMILY SSF56801 18 528 6.28E-144 T 11-10-2018 dqs_3186 a64526585ca98fbf76666531fd76561e 532 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 20 527 1.1E-266 T 11-10-2018 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 dqs_0111 fc0f67590969a91c44f9a390b03d7842 280 Hamap MF_00188 Protease HtpX [htpX]. 5 279 28.756 T 11-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 dqs_0111 fc0f67590969a91c44f9a390b03d7842 280 Pfam PF01435 Peptidase family M48 67 279 2.0E-39 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 dqs_0111 fc0f67590969a91c44f9a390b03d7842 280 Gene3D G3DSA:3.30.2010.10 58 150 4.4E-32 T 11-10-2018 dqs_3729 b45a1fd61aaeb66257a2fc81f8a52f99 320 Gene3D G3DSA:3.40.50.720 15 303 9.0E-102 T 11-10-2018 dqs_3729 b45a1fd61aaeb66257a2fc81f8a52f99 320 SUPERFAMILY SSF51735 10 315 3.54E-71 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3729 b45a1fd61aaeb66257a2fc81f8a52f99 320 Gene3D G3DSA:3.90.25.10 177 310 9.0E-102 T 11-10-2018 dqs_3729 b45a1fd61aaeb66257a2fc81f8a52f99 320 Pfam PF01370 NAD dependent epimerase/dehydratase family 15 246 7.4E-74 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 dqs_3729 b45a1fd61aaeb66257a2fc81f8a52f99 320 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 12 314 47.999 T 11-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Pfam PF05000 RNA polymerase Rpb1, domain 4 675 765 1.6E-19 T 11-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Gene3D G3DSA:1.10.274.100 492 642 2.8E-36 T 11-10-2018 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Pfam PF04997 RNA polymerase Rpb1, domain 1 17 344 1.8E-86 T 11-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Gene3D G3DSA:1.10.1790.20 1140 1318 7.3E-67 T 11-10-2018 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 13 1381 18.874 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Gene3D G3DSA:2.40.50.100 1156 1219 7.3E-67 T 11-10-2018 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Pfam PF04983 RNA polymerase Rpb1, domain 3 491 646 1.4E-24 T 11-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Pfam PF00623 RNA polymerase Rpb1, domain 2 396 487 1.1E-26 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Pfam PF00623 RNA polymerase Rpb1, domain 2 346 400 1.5E-8 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Gene3D G3DSA:1.10.132.30 643 792 2.2E-64 T 11-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 SUPERFAMILY SSF64484 18 1368 0.0 T 11-10-2018 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Gene3D G3DSA:2.40.50.100 1026 1131 1.0E-30 T 11-10-2018 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Gene3D G3DSA:1.10.150.390 1320 1379 2.5E-28 T 11-10-2018 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Pfam PF04998 RNA polymerase Rpb1, domain 5 768 1320 2.8E-76 T 11-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Gene3D G3DSA:1.10.40.90 376 418 3.1E-20 T 11-10-2018 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 Gene3D G3DSA:2.40.50.100 950 1025 3.3E-27 T 11-10-2018 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 SMART SM00663 237 516 8.2E-177 T 11-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_3562 2e8c7f9152d1d70caa5dce668afefb2f 1404 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 22 1024 0.0 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_2370 8d09668dfcd53f2787dca37f2a96f41c 371 Pfam PF00534 Glycosyl transferases group 1 189 316 3.3E-17 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_2370 8d09668dfcd53f2787dca37f2a96f41c 371 Gene3D G3DSA:3.40.50.2000 1 187 4.1E-27 T 11-10-2018 dqs_2370 8d09668dfcd53f2787dca37f2a96f41c 371 Gene3D G3DSA:3.40.50.2000 188 367 6.4E-22 T 11-10-2018 dqs_2370 8d09668dfcd53f2787dca37f2a96f41c 371 SUPERFAMILY SSF53756 2 368 8.9E-53 T 11-10-2018 dqs_2370 8d09668dfcd53f2787dca37f2a96f41c 371 Pfam PF13439 Glycosyltransferase Family 4 14 179 1.0E-17 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_3274 370f12dff9c3a7d4d13a0fcae68e859a 127 PIRSF PIRSF021239 15 127 3.0E-52 T 11-10-2018 IPR007437 Protein of unknown function DUF486 dqs_3274 370f12dff9c3a7d4d13a0fcae68e859a 127 Pfam PF04342 Putative member of DMT superfamily (DUF486) 22 125 6.1E-45 T 11-10-2018 IPR007437 Protein of unknown function DUF486 dqs_0375 4450008ec24beda2c8b4fbf4e67f6b26 106 Gene3D G3DSA:3.40.30.10 4 106 5.6E-31 T 11-10-2018 dqs_0375 4450008ec24beda2c8b4fbf4e67f6b26 106 SUPERFAMILY SSF52833 4 103 1.68E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0375 4450008ec24beda2c8b4fbf4e67f6b26 106 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 19 89 2.5E-6 T 11-10-2018 dqs_3915 5968cdb5bf93fef116942d938c0a8079 298 Pfam PF03641 Possible lysine decarboxylase 149 279 8.9E-33 T 11-10-2018 IPR031100 LOG family dqs_3915 5968cdb5bf93fef116942d938c0a8079 298 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 115 280 3.2E-29 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG dqs_3915 5968cdb5bf93fef116942d938c0a8079 298 Gene3D G3DSA:3.40.50.450 48 282 2.8E-60 T 11-10-2018 dqs_3915 5968cdb5bf93fef116942d938c0a8079 298 SUPERFAMILY SSF102405 39 279 1.02E-53 T 11-10-2018 dqs_1805 b4616f3e89a7e9ae50d9e0457d6cd594 270 SUPERFAMILY SSF52540 2 268 1.41E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1805 b4616f3e89a7e9ae50d9e0457d6cd594 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 267 3.7E-102 T 11-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 dqs_1805 b4616f3e89a7e9ae50d9e0457d6cd594 270 PIRSF PIRSF003092 1 270 1.8E-90 T 11-10-2018 IPR025501 ATP binding protein MinD dqs_1805 b4616f3e89a7e9ae50d9e0457d6cd594 270 Pfam PF13614 AAA domain 2 162 1.6E-19 T 11-10-2018 IPR025669 AAA domain dqs_1805 b4616f3e89a7e9ae50d9e0457d6cd594 270 Gene3D G3DSA:3.40.50.300 1 259 5.1E-68 T 11-10-2018 dqs_2306 00000968bd069973767a7663fc2392df 308 Pfam PF03186 CobD/Cbib protein 30 283 9.1E-29 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 dqs_2306 00000968bd069973767a7663fc2392df 308 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 308 63.718 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 dqs_0925 5134299437c41b8eecce437fc4c700c3 263 Pfam PF01553 Acyltransferase 50 166 7.2E-21 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0925 5134299437c41b8eecce437fc4c700c3 263 SUPERFAMILY SSF69593 13 218 1.09E-27 T 11-10-2018 dqs_0925 5134299437c41b8eecce437fc4c700c3 263 SMART SM00563 56 168 2.6E-31 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_1095 74341bf86d46276530d77239356270af 265 Gene3D G3DSA:3.40.50.10090 48 182 2.2E-77 T 11-10-2018 dqs_1095 74341bf86d46276530d77239356270af 265 Gene3D G3DSA:3.40.50.10090 20 249 2.2E-77 T 11-10-2018 dqs_1095 74341bf86d46276530d77239356270af 265 SUPERFAMILY SSF69618 16 264 2.35E-54 T 11-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1095 74341bf86d46276530d77239356270af 265 Pfam PF02602 Uroporphyrinogen-III synthase HemD 31 256 9.6E-47 T 11-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 Pfam PF12796 Ankyrin repeats (3 copies) 40 119 7.1E-11 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 SUPERFAMILY SSF48403 36 211 9.17E-49 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 Gene3D G3DSA:1.25.40.20 121 213 4.7E-31 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 Gene3D G3DSA:1.25.40.20 25 120 2.2E-22 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 Pfam PF13637 Ankyrin repeats (many copies) 126 178 4.3E-11 T 11-10-2018 dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 SMART SM00248 124 153 2.7E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 SMART SM00248 61 90 0.11 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 SMART SM00248 157 186 2.1E-7 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 SMART SM00248 94 123 0.88 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 PRINTS PR01415 Ankyrin repeat signature 125 140 1.0E-7 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_1722 972937f87c4d09d694b90a52c44cd5f7 229 PRINTS PR01415 Ankyrin repeat signature 173 187 1.0E-7 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 dqs_1660 6276ac121cac518d89464c810648fe1a 168 SUPERFAMILY SSF50475 9 122 5.74E-6 T 11-10-2018 dqs_1660 6276ac121cac518d89464c810648fe1a 168 Gene3D G3DSA:2.30.110.10 11 166 3.0E-7 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_3076 40baae99cd941f557f53d9f1948941e0 178 SUPERFAMILY SSF81342 3 172 1.18E-30 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 dqs_3076 40baae99cd941f557f53d9f1948941e0 178 Pfam PF01292 Prokaryotic cytochrome b561 5 172 6.9E-28 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 dqs_2238 0b823b3414c3c33238bcae844a0c593b 126 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 110 26.283 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 dqs_2238 0b823b3414c3c33238bcae844a0c593b 126 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 4 113 2.9E-33 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 dqs_2238 0b823b3414c3c33238bcae844a0c593b 126 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 97 8.0E-40 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 dqs_2238 0b823b3414c3c33238bcae844a0c593b 126 Gene3D G3DSA:3.30.300.20 1 104 1.4E-35 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_2238 0b823b3414c3c33238bcae844a0c593b 126 SUPERFAMILY SSF89919 3 112 5.36E-34 T 11-10-2018 IPR023799 Ribosome-binding factor A domain superfamily dqs_2238 0b823b3414c3c33238bcae844a0c593b 126 Pfam PF02033 Ribosome-binding factor A 7 110 3.0E-31 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 dqs_3398 fe5d90e133ebc142270105b918c68718 321 Gene3D G3DSA:3.90.550.10 1 255 7.0E-52 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3398 fe5d90e133ebc142270105b918c68718 321 Pfam PF00535 Glycosyl transferase family 2 13 124 7.1E-28 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_3398 fe5d90e133ebc142270105b918c68718 321 SUPERFAMILY SSF53448 10 249 3.33E-52 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0437 893363b829e4a01fac571b0e5099a038 647 SMART SM00267 462 634 1.4E-60 T 11-10-2018 IPR000160 GGDEF domain dqs_0437 893363b829e4a01fac571b0e5099a038 647 Gene3D G3DSA:3.30.450.350 89 284 1.5E-12 T 11-10-2018 dqs_0437 893363b829e4a01fac571b0e5099a038 647 Pfam PF08448 PAS fold 358 442 8.6E-10 T 11-10-2018 IPR013656 PAS fold-4 dqs_0437 893363b829e4a01fac571b0e5099a038 647 SMART SM00091 348 414 0.0039 T 11-10-2018 IPR000014 PAS domain dqs_0437 893363b829e4a01fac571b0e5099a038 647 SMART SM01079 85 279 2.3E-39 T 11-10-2018 IPR006189 CHASE domain dqs_0437 893363b829e4a01fac571b0e5099a038 647 Pfam PF03924 CHASE domain 88 268 7.3E-33 T 11-10-2018 IPR006189 CHASE domain dqs_0437 893363b829e4a01fac571b0e5099a038 647 SUPERFAMILY SSF55785 349 440 1.12E-11 T 11-10-2018 IPR035965 PAS domain superfamily dqs_0437 893363b829e4a01fac571b0e5099a038 647 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 471 633 3.2E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_0437 893363b829e4a01fac571b0e5099a038 647 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 350 468 2.5E-7 T 11-10-2018 IPR000014 PAS domain dqs_0437 893363b829e4a01fac571b0e5099a038 647 Gene3D G3DSA:3.30.70.270 467 637 2.6E-55 T 11-10-2018 dqs_0437 893363b829e4a01fac571b0e5099a038 647 Pfam PF00990 Diguanylate cyclase, GGDEF domain 473 628 9.9E-49 T 11-10-2018 IPR000160 GGDEF domain dqs_0437 893363b829e4a01fac571b0e5099a038 647 SUPERFAMILY SSF55073 478 633 1.57E-48 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0437 893363b829e4a01fac571b0e5099a038 647 Gene3D G3DSA:3.30.450.20 337 458 1.1E-11 T 11-10-2018 dqs_1441 988c58f2fb9d7a4b600b305c0430b295 239 Gene3D G3DSA:3.30.870.10 3 144 1.1E-8 T 11-10-2018 dqs_1441 988c58f2fb9d7a4b600b305c0430b295 239 Pfam PF13091 PLD-like domain 15 131 6.2E-9 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 dqs_1441 988c58f2fb9d7a4b600b305c0430b295 239 SUPERFAMILY SSF56024 10 130 2.7E-9 T 11-10-2018 dqs_1834 f0ff5746980e18b61de66cc09dc4078b 145 Pfam PF10116 Protein required for attachment to host cells 5 139 3.4E-41 T 11-10-2018 IPR019291 Host attachment protein dqs_4118 480f1df63ea213fb1d8d6f44829aa418 506 Gene3D G3DSA:1.20.1250.20 275 491 2.1E-6 T 11-10-2018 dqs_4118 480f1df63ea213fb1d8d6f44829aa418 506 Gene3D G3DSA:1.20.1250.20 7 201 2.0E-10 T 11-10-2018 dqs_4118 480f1df63ea213fb1d8d6f44829aa418 506 Pfam PF07690 Major Facilitator Superfamily 17 385 1.2E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_4118 480f1df63ea213fb1d8d6f44829aa418 506 SUPERFAMILY SSF103473 10 489 7.72E-25 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2625 a71d23c01c543f580c9eb4c5524e6cbd 467 Pfam PF13379 NMT1-like family 104 341 2.1E-78 T 11-10-2018 dqs_2625 a71d23c01c543f580c9eb4c5524e6cbd 467 Gene3D G3DSA:3.40.190.10 195 453 1.1E-114 T 11-10-2018 dqs_2625 a71d23c01c543f580c9eb4c5524e6cbd 467 Gene3D G3DSA:3.40.190.10 109 448 1.1E-114 T 11-10-2018 dqs_2625 a71d23c01c543f580c9eb4c5524e6cbd 467 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 67 88 0.0013 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_2625 a71d23c01c543f580c9eb4c5524e6cbd 467 SUPERFAMILY SSF53850 105 337 1.0E-37 T 11-10-2018 dqs_3597 38473d6c94e2a7f9fb9fe15e45a39fcd 121 SUPERFAMILY SSF52172 5 120 2.56E-41 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3597 38473d6c94e2a7f9fb9fe15e45a39fcd 121 Pfam PF00072 Response regulator receiver domain 6 118 5.0E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3597 38473d6c94e2a7f9fb9fe15e45a39fcd 121 SMART SM00448 4 117 3.6E-43 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3597 38473d6c94e2a7f9fb9fe15e45a39fcd 121 Gene3D G3DSA:3.40.50.12740 4 121 1.9E-47 T 11-10-2018 dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 Gene3D G3DSA:3.90.1260.10 181 409 1.9E-98 T 11-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 403 2.2E-141 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 120 131 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 Pfam PF00764 Arginosuccinate synthase 8 401 1.6E-151 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 SUPERFAMILY SSF69864 180 404 1.11E-92 T 11-10-2018 dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 406 51.078 T 11-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 Gene3D G3DSA:3.40.50.620 5 177 1.1E-66 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_2319 4ed8ed14a6d08ed9f948982a0ba21d4a 409 SUPERFAMILY SSF52402 5 174 3.31E-47 T 11-10-2018 dqs_3751 11c6cb7b741e72f444dc091b17ac3cfd 121 Pfam PF02410 Ribosomal silencing factor during starvation 9 104 2.0E-26 T 11-10-2018 dqs_3751 11c6cb7b741e72f444dc091b17ac3cfd 121 Gene3D G3DSA:3.30.460.10 2 118 6.2E-36 T 11-10-2018 dqs_3751 11c6cb7b741e72f444dc091b17ac3cfd 121 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 1.8E-35 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS dqs_3751 11c6cb7b741e72f444dc091b17ac3cfd 121 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 23.788 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS dqs_3751 11c6cb7b741e72f444dc091b17ac3cfd 121 SUPERFAMILY SSF81301 2 110 4.09E-36 T 11-10-2018 dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 Gene3D G3DSA:1.10.10.10 10 96 8.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 69 9.7E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 SUPERFAMILY SSF53850 97 299 4.5E-33 T 11-10-2018 dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 Gene3D G3DSA:3.40.190.10 108 292 6.3E-47 T 11-10-2018 dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 SUPERFAMILY SSF46785 7 89 3.71E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 Pfam PF03466 LysR substrate binding domain 97 297 5.7E-32 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3900 59c7ad2f3ec55e1afa6630aafa705ca0 302 Gene3D G3DSA:3.40.190.10 165 266 6.3E-47 T 11-10-2018 dqs_3854 98a4d870741454781e386901a0fc5dc9 150 SUPERFAMILY SSF55729 5 144 1.47E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3854 98a4d870741454781e386901a0fc5dc9 150 Gene3D G3DSA:3.40.630.30 3 141 2.8E-36 T 11-10-2018 dqs_3854 98a4d870741454781e386901a0fc5dc9 150 Pfam PF00583 Acetyltransferase (GNAT) family 26 135 7.8E-17 T 11-10-2018 IPR000182 GNAT domain dqs_1848 7dfdf46ee7d7b170dc2c6a210c905085 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.0E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_1848 7dfdf46ee7d7b170dc2c6a210c905085 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.0E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_1848 7dfdf46ee7d7b170dc2c6a210c905085 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 3.0E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_1848 7dfdf46ee7d7b170dc2c6a210c905085 207 Gene3D G3DSA:1.10.357.10 6 202 3.1E-19 T 11-10-2018 dqs_1848 7dfdf46ee7d7b170dc2c6a210c905085 207 SUPERFAMILY SSF46689 8 73 5.64E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0279 e536787ed042126b292d22b5a4eca7dd 173 SUPERFAMILY SSF81342 4 172 5.41E-37 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 dqs_0279 e536787ed042126b292d22b5a4eca7dd 173 Pfam PF01292 Prokaryotic cytochrome b561 8 169 8.6E-25 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 dqs_0279 e536787ed042126b292d22b5a4eca7dd 173 Gene3D G3DSA:1.20.950.20 2 158 2.0E-16 T 11-10-2018 dqs_1436 5fa55add6225b26bf1fe79f28db681ff 201 Gene3D G3DSA:3.40.50.300 12 201 3.2E-45 T 11-10-2018 dqs_1436 5fa55add6225b26bf1fe79f28db681ff 201 Pfam PF00005 ABC transporter 16 144 1.6E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1436 5fa55add6225b26bf1fe79f28db681ff 201 SMART SM00382 23 193 7.5E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1436 5fa55add6225b26bf1fe79f28db681ff 201 SUPERFAMILY SSF52540 14 196 8.62E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3927 938bd2943d4213aa5ff3328bcb2f1246 196 Pfam PF12158 Protein of unknown function (DUF3592) 19 162 1.3E-17 T 11-10-2018 IPR021994 Protein of unknown function DUF3592 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 345 364 - T 11-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 Gene3D G3DSA:1.10.579.10 294 480 2.4E-83 T 11-10-2018 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 Gene3D G3DSA:3.40.50.620 5 213 1.4E-68 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 Pfam PF00875 DNA photolyase 4 168 3.2E-48 T 11-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 PRINTS PR00147 DNA photolyase signature 345 363 8.1E-29 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 PRINTS PR00147 DNA photolyase signature 384 398 8.1E-29 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 PRINTS PR00147 DNA photolyase signature 148 164 8.1E-29 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 PRINTS PR00147 DNA photolyase signature 325 341 8.1E-29 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 Pfam PF03441 FAD binding domain of DNA photolyase 276 474 2.6E-89 T 11-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 SUPERFAMILY SSF52425 3 183 4.45E-51 T 11-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 11-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 SUPERFAMILY SSF48173 200 478 1.13E-106 T 11-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 dqs_3601 2f7521df3b6949abbc5acc87118e4b43 483 Gene3D G3DSA:1.25.40.80 137 290 1.4E-68 T 11-10-2018 dqs_3510 2805e81ee1be1291863d945c9683c528 307 Pfam PF03466 LysR substrate binding domain 90 296 2.6E-42 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3510 2805e81ee1be1291863d945c9683c528 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.6E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3510 2805e81ee1be1291863d945c9683c528 307 Gene3D G3DSA:3.40.190.290 93 295 5.9E-63 T 11-10-2018 dqs_3510 2805e81ee1be1291863d945c9683c528 307 Gene3D G3DSA:1.10.10.10 4 91 2.0E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3510 2805e81ee1be1291863d945c9683c528 307 SUPERFAMILY SSF46785 4 114 4.38E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3510 2805e81ee1be1291863d945c9683c528 307 SUPERFAMILY SSF53850 91 299 4.34E-43 T 11-10-2018 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 PIRSF PIRSF002097 1 78 4.6E-32 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 Gene3D G3DSA:1.10.10.60 1 77 7.8E-25 T 11-10-2018 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 41 58 1.9E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 58 78 1.9E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 SUPERFAMILY SSF46689 9 77 1.52E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 Pfam PF02954 Bacterial regulatory protein, Fis family 35 75 2.8E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 PRINTS PR01591 DNA-binding protein FIS signature 22 37 4.1E-5 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 PRINTS PR01591 DNA-binding protein FIS signature 6 22 4.1E-5 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 dqs_3033 9c809a4f9b477ff6a50532727d42a56e 78 PRINTS PR01591 DNA-binding protein FIS signature 37 49 4.1E-5 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 dqs_3077 c7f4c73e9b3e0528bb960845e0a29f76 107 PRINTS PR00606 Class ID cytochrome C signature 64 77 3.5E-21 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3077 c7f4c73e9b3e0528bb960845e0a29f76 107 PRINTS PR00606 Class ID cytochrome C signature 93 103 3.5E-21 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3077 c7f4c73e9b3e0528bb960845e0a29f76 107 PRINTS PR00606 Class ID cytochrome C signature 79 89 3.5E-21 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3077 c7f4c73e9b3e0528bb960845e0a29f76 107 PRINTS PR00606 Class ID cytochrome C signature 26 39 3.5E-21 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3077 c7f4c73e9b3e0528bb960845e0a29f76 107 PRINTS PR00606 Class ID cytochrome C signature 41 54 3.5E-21 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 dqs_3077 c7f4c73e9b3e0528bb960845e0a29f76 107 SUPERFAMILY SSF46626 28 103 7.56E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3077 c7f4c73e9b3e0528bb960845e0a29f76 107 Gene3D G3DSA:1.10.760.10 22 104 4.3E-30 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3077 c7f4c73e9b3e0528bb960845e0a29f76 107 Pfam PF00034 Cytochrome c 26 103 3.6E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2613 63fa58451db244b8b4d868c9ddf52fc5 138 SUPERFAMILY SSF54593 3 129 1.88E-24 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2613 63fa58451db244b8b4d868c9ddf52fc5 138 Gene3D G3DSA:3.10.180.10 1 138 3.7E-54 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3058 eee6ac5ec3eb019c3075f5c51fbabdc9 134 Gene3D G3DSA:3.30.700.10 8 133 3.3E-23 T 11-10-2018 dqs_3058 eee6ac5ec3eb019c3075f5c51fbabdc9 134 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 5.0E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3058 eee6ac5ec3eb019c3075f5c51fbabdc9 134 SUPERFAMILY SSF54523 8 122 2.51E-22 T 11-10-2018 dqs_3058 eee6ac5ec3eb019c3075f5c51fbabdc9 134 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 114 8.0E-22 T 11-10-2018 IPR031982 Type IV minor pilin ComP dqs_3058 eee6ac5ec3eb019c3075f5c51fbabdc9 134 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 7.8E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3576 9beb929fb6094b8de815eb219b77c7b1 1198 Gene3D G3DSA:3.40.50.970 39 248 1.0E-28 T 11-10-2018 dqs_3576 9beb929fb6094b8de815eb219b77c7b1 1198 SUPERFAMILY SSF53323 758 969 5.23E-28 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 dqs_3576 9beb929fb6094b8de815eb219b77c7b1 1198 SUPERFAMILY SSF52922 293 401 9.42E-7 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_3576 9beb929fb6094b8de815eb219b77c7b1 1198 SUPERFAMILY SSF52518 44 227 2.0E-20 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_3576 9beb929fb6094b8de815eb219b77c7b1 1198 SUPERFAMILY SSF52518 473 658 3.11E-15 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_3576 9beb929fb6094b8de815eb219b77c7b1 1198 Gene3D G3DSA:3.40.920.10 755 958 3.6E-18 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 dqs_3576 9beb929fb6094b8de815eb219b77c7b1 1198 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 493 581 3.4E-6 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 dqs_3576 9beb929fb6094b8de815eb219b77c7b1 1198 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 766 953 2.0E-22 T 11-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 dqs_4084 acaafdcd0a53cbd805d709bf426e076d 286 Pfam PF12800 4Fe-4S binding domain 191 203 0.4 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_4084 acaafdcd0a53cbd805d709bf426e076d 286 Pfam PF12800 4Fe-4S binding domain 144 163 0.034 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_4084 acaafdcd0a53cbd805d709bf426e076d 286 Gene3D G3DSA:3.30.70.20 139 213 2.2E-8 T 11-10-2018 dqs_4084 acaafdcd0a53cbd805d709bf426e076d 286 Gene3D G3DSA:3.30.70.20 62 138 6.2E-11 T 11-10-2018 dqs_4084 acaafdcd0a53cbd805d709bf426e076d 286 Pfam PF12838 4Fe-4S dicluster domain 67 122 4.5E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_4084 acaafdcd0a53cbd805d709bf426e076d 286 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 68 79 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_4084 acaafdcd0a53cbd805d709bf426e076d 286 SUPERFAMILY SSF54862 49 204 1.05E-23 T 11-10-2018 dqs_4084 acaafdcd0a53cbd805d709bf426e076d 286 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 15 223 1.9E-79 T 11-10-2018 IPR004494 MauM/NapG ferredoxin-type protein dqs_1878 c9c1a7a248b914d6cf450b9e06cf7f00 188 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 50 187 5.1E-30 T 11-10-2018 IPR018550 Lipid A 3-O-deacylase-related dqs_1878 c9c1a7a248b914d6cf450b9e06cf7f00 188 PIRSF PIRSF029681 2 188 8.0E-54 T 11-10-2018 IPR018550 Lipid A 3-O-deacylase-related dqs_1878 c9c1a7a248b914d6cf450b9e06cf7f00 188 Gene3D G3DSA:2.40.160.20 38 185 4.8E-31 T 11-10-2018 dqs_1336 da63d4d18eb30da1d684b75091c54148 363 SUPERFAMILY SSF47240 12 361 7.3E-101 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_1336 da63d4d18eb30da1d684b75091c54148 363 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 65 292 4.4E-75 T 11-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 dqs_1336 da63d4d18eb30da1d684b75091c54148 363 PIRSF PIRSF000040 12 360 6.3E-87 T 11-10-2018 IPR012078 Methane/phenol monooxygenase, hydroxylase component GO:0016709|GO:0055114 dqs_1336 da63d4d18eb30da1d684b75091c54148 363 Gene3D G3DSA:1.10.620.20 13 354 5.3E-104 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 dqs_2652 313047dcde47b9279cd5ea7c5109b71b 622 SUPERFAMILY SSF56801 33 519 4.32E-75 T 11-10-2018 dqs_2652 313047dcde47b9279cd5ea7c5109b71b 622 Pfam PF00501 AMP-binding enzyme 48 457 4.9E-54 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_2652 313047dcde47b9279cd5ea7c5109b71b 622 Gene3D G3DSA:3.40.50.12780 37 461 1.9E-60 T 11-10-2018 dqs_3652 a6460bd68fce9a1a09d650cc53806d0a 281 TIGRFAM TIGR03138 QueF: queuine synthase 12 281 2.0E-120 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 dqs_3652 a6460bd68fce9a1a09d650cc53806d0a 281 Gene3D G3DSA:3.30.1130.10 145 281 5.7E-55 T 11-10-2018 dqs_3652 a6460bd68fce9a1a09d650cc53806d0a 281 PIRSF PIRSF004750 8 281 2.8E-118 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 dqs_3652 a6460bd68fce9a1a09d650cc53806d0a 281 Pfam PF14489 QueF-like protein 194 270 2.2E-24 T 11-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 dqs_3652 a6460bd68fce9a1a09d650cc53806d0a 281 Gene3D G3DSA:3.30.1130.10 22 138 3.7E-42 T 11-10-2018 dqs_3652 a6460bd68fce9a1a09d650cc53806d0a 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 22 131 5.4E-47 T 11-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 dqs_3652 a6460bd68fce9a1a09d650cc53806d0a 281 SUPERFAMILY SSF55620 184 264 8.15E-8 T 11-10-2018 dqs_3652 a6460bd68fce9a1a09d650cc53806d0a 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 144.44 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 dqs_3181 dfbede38e78a2e48f765402c8a9e8cca 268 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 243 262 1.1E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_3181 dfbede38e78a2e48f765402c8a9e8cca 268 Pfam PF00005 ABC transporter 40 192 5.1E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3181 dfbede38e78a2e48f765402c8a9e8cca 268 SUPERFAMILY SSF52540 21 262 4.65E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3181 dfbede38e78a2e48f765402c8a9e8cca 268 Gene3D G3DSA:3.40.50.300 21 267 1.1E-55 T 11-10-2018 dqs_3181 dfbede38e78a2e48f765402c8a9e8cca 268 SMART SM00382 46 240 9.5E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 Gene3D G3DSA:3.40.50.2300 16 159 1.5E-38 T 11-10-2018 dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 283 295 2.5E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 253 267 2.5E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 267 283 2.5E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 SUPERFAMILY SSF52172 17 159 1.85E-40 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 Pfam PF00196 Bacterial regulatory proteins, luxR family 253 307 5.7E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 SMART SM00421 250 307 9.6E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 Gene3D G3DSA:1.10.10.10 248 311 1.7E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 Pfam PF00072 Response regulator receiver domain 17 128 1.7E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 SMART SM00448 15 128 2.0E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0725 02331fcfb3d7c07bca470642ed1eea08 318 SUPERFAMILY SSF46894 245 308 1.33E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_4082 38c71fb4fbba3771a8b2a4828fc87066 150 PIRSF PIRSF006105 3 150 1.2E-47 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB dqs_4082 38c71fb4fbba3771a8b2a4828fc87066 150 Gene3D G3DSA:1.10.1130.10 64 131 1.4E-29 T 11-10-2018 dqs_4082 38c71fb4fbba3771a8b2a4828fc87066 150 SUPERFAMILY SSF48695 49 146 8.25E-40 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily dqs_4082 38c71fb4fbba3771a8b2a4828fc87066 150 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 25 144 8.0E-46 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB dqs_1040 48271e9d4a7218844ac1545436a0e640 162 SUPERFAMILY SSF47188 1 122 1.57E-22 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_1040 48271e9d4a7218844ac1545436a0e640 162 Pfam PF01814 Hemerythrin HHE cation binding domain 15 115 1.6E-7 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_1040 48271e9d4a7218844ac1545436a0e640 162 Gene3D G3DSA:1.20.120.50 2 123 8.5E-19 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_1040 48271e9d4a7218844ac1545436a0e640 162 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 5 119 6.5E-19 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 dqs_0047 640a106c9ae44dd9180e8cb072322e73 808 SUPERFAMILY SSF82866 206 397 2.22E-25 T 11-10-2018 dqs_0047 640a106c9ae44dd9180e8cb072322e73 808 SUPERFAMILY SSF82866 578 782 2.35E-33 T 11-10-2018 dqs_0047 640a106c9ae44dd9180e8cb072322e73 808 Pfam PF03176 MMPL family 217 430 4.2E-9 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_0047 640a106c9ae44dd9180e8cb072322e73 808 Pfam PF03176 MMPL family 560 794 2.0E-19 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_0047 640a106c9ae44dd9180e8cb072322e73 808 Gene3D G3DSA:1.20.1640.10 584 791 7.9E-13 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 Gene3D G3DSA:3.30.390.30 335 445 2.3E-47 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 133 142 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 295 302 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 52 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 332 353 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 397 412 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 252 266 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 419 439 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 192 3.5E-72 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 445 3.9E-181 T 11-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 38 48 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 280 302 3.7E-28 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 3.7E-28 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 130 148 3.7E-28 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 267 3.7E-28 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.7E-28 T 11-10-2018 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 315 2.1E-64 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 Gene3D G3DSA:3.50.50.60 142 258 1.1E-112 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0728 55303122a53e1013811af33c3a4eec0c 445 PIRSF PIRSF000350 1 443 5.2E-90 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 SUPERFAMILY SSF55424 333 445 1.63E-36 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 336 444 5.3E-36 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 dqs_0728 55303122a53e1013811af33c3a4eec0c 445 SUPERFAMILY SSF51905 1 363 2.2E-59 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0728 55303122a53e1013811af33c3a4eec0c 445 Gene3D G3DSA:3.50.50.60 4 319 1.1E-112 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1414 c58a69b5043489c8fffd439251cc0a91 1307 Pfam PF13116 Protein of unknown function 536 813 4.7E-58 T 11-10-2018 IPR025263 Domain of unknown function DUF3971 dqs_1414 c58a69b5043489c8fffd439251cc0a91 1307 Pfam PF13502 AsmA-like C-terminal region 1036 1278 2.5E-63 T 11-10-2018 IPR032712 AsmA-like, C-terminal dqs_1414 c58a69b5043489c8fffd439251cc0a91 1307 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 31 1283 7.0E-244 T 11-10-2018 IPR011836 Conserved hypothetical protein CHP02099 dqs_0765 309f7f2d5147f1cc4d42e03bce58aaa1 337 SMART SM00342 241 323 4.6E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0765 309f7f2d5147f1cc4d42e03bce58aaa1 337 Pfam PF12833 Helix-turn-helix domain 247 325 1.5E-15 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0765 309f7f2d5147f1cc4d42e03bce58aaa1 337 Gene3D G3DSA:1.10.10.60 221 331 8.9E-23 T 11-10-2018 dqs_0765 309f7f2d5147f1cc4d42e03bce58aaa1 337 SUPERFAMILY SSF46689 277 325 2.96E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0765 309f7f2d5147f1cc4d42e03bce58aaa1 337 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 12 198 2.3E-36 T 11-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal dqs_0250 6e8836bcabdd159d1ae1ce9bab7b45e2 340 SUPERFAMILY SSF51556 12 327 4.36E-88 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_0250 6e8836bcabdd159d1ae1ce9bab7b45e2 340 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 16 326 4.9E-120 T 11-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 dqs_0250 6e8836bcabdd159d1ae1ce9bab7b45e2 340 Pfam PF00962 Adenosine/AMP deaminase 16 329 5.8E-78 T 11-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 dqs_0250 6e8836bcabdd159d1ae1ce9bab7b45e2 340 Hamap MF_01962 Adenine deaminase. 12 324 86.485 T 11-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 dqs_0250 6e8836bcabdd159d1ae1ce9bab7b45e2 340 Gene3D G3DSA:3.20.20.140 6 338 8.1E-107 T 11-10-2018 dqs_0773 f9f39f74a6576bbda9240a80b12da240 235 SUPERFAMILY SSF52172 2 127 1.31E-38 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0773 f9f39f74a6576bbda9240a80b12da240 235 Gene3D G3DSA:3.40.50.2300 2 136 7.9E-34 T 11-10-2018 dqs_0773 f9f39f74a6576bbda9240a80b12da240 235 Pfam PF00072 Response regulator receiver domain 5 114 3.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0773 f9f39f74a6576bbda9240a80b12da240 235 SMART SM00448 3 114 4.9E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0773 f9f39f74a6576bbda9240a80b12da240 235 Gene3D G3DSA:1.10.10.10 137 235 1.5E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0773 f9f39f74a6576bbda9240a80b12da240 235 SMART SM00862 154 230 8.1E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0773 f9f39f74a6576bbda9240a80b12da240 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 230 3.1E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0773 f9f39f74a6576bbda9240a80b12da240 235 SUPERFAMILY SSF46894 140 231 3.12E-22 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_0853 5ef8fb44d537a56c6813f2edb406b1a8 379 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 87 271 1.0E-14 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_0853 5ef8fb44d537a56c6813f2edb406b1a8 379 Gene3D G3DSA:1.10.287.470 112 179 7.1E-58 T 11-10-2018 dqs_0853 5ef8fb44d537a56c6813f2edb406b1a8 379 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 48 371 5.3E-61 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_0853 5ef8fb44d537a56c6813f2edb406b1a8 379 Gene3D G3DSA:2.40.50.100 73 214 7.1E-58 T 11-10-2018 dqs_0853 5ef8fb44d537a56c6813f2edb406b1a8 379 Gene3D G3DSA:2.40.420.20 47 356 7.1E-58 T 11-10-2018 dqs_0853 5ef8fb44d537a56c6813f2edb406b1a8 379 SUPERFAMILY SSF111369 64 266 6.02E-21 T 11-10-2018 dqs_0853 5ef8fb44d537a56c6813f2edb406b1a8 379 Gene3D G3DSA:2.40.30.170 59 297 7.1E-58 T 11-10-2018 dqs_2175 f95fc21c844db2c2bf4cf2ab0592478d 242 Pfam PF00588 SpoU rRNA Methylase family 10 159 2.2E-30 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 dqs_2175 f95fc21c844db2c2bf4cf2ab0592478d 242 PIRSF PIRSF004808 5 242 3.7E-67 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 dqs_2175 f95fc21c844db2c2bf4cf2ab0592478d 242 Gene3D G3DSA:1.10.8.590 177 239 6.7E-25 T 11-10-2018 dqs_2175 f95fc21c844db2c2bf4cf2ab0592478d 242 Gene3D G3DSA:3.40.1280.10 5 170 2.1E-57 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal dqs_2175 f95fc21c844db2c2bf4cf2ab0592478d 242 SUPERFAMILY SSF75217 9 190 5.56E-35 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases dqs_2175 f95fc21c844db2c2bf4cf2ab0592478d 242 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 8 240 1.9E-58 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 dqs_1334 e619cee7dd1ce9311b32a91c5d6c105e 556 SUPERFAMILY SSF47240 19 529 5.21E-142 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_1334 e619cee7dd1ce9311b32a91c5d6c105e 556 Gene3D G3DSA:1.10.620.20 2 531 5.4E-177 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 dqs_1334 e619cee7dd1ce9311b32a91c5d6c105e 556 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 30 254 4.0E-59 T 11-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 dqs_1207 8f093fddbbff18c1773534f4861aa030 379 Gene3D G3DSA:3.30.310.170 254 379 1.2E-12 T 11-10-2018 dqs_1207 8f093fddbbff18c1773534f4861aa030 379 Pfam PF06804 NlpB/DapX lipoprotein 38 376 1.2E-46 T 11-10-2018 IPR010653 NlpB/DapX lipoprotein dqs_1484 994f4c0c12e93d6abc1badf1523f0631 350 SMART SM00463 258 342 5.4E-9 T 11-10-2018 IPR002625 Smr domain dqs_1484 994f4c0c12e93d6abc1badf1523f0631 350 SUPERFAMILY SSF160443 259 342 7.19E-16 T 11-10-2018 IPR036063 Smr domain superfamily dqs_1484 994f4c0c12e93d6abc1badf1523f0631 350 Gene3D G3DSA:3.30.1370.110 215 345 4.8E-39 T 11-10-2018 dqs_1484 994f4c0c12e93d6abc1badf1523f0631 350 Pfam PF01713 Smr domain 261 342 6.8E-21 T 11-10-2018 IPR002625 Smr domain dqs_4043 c4dff9acaa2cdd659d717fc3c40b73c0 273 SUPERFAMILY SSF144059 10 270 4.45E-95 T 11-10-2018 dqs_4043 c4dff9acaa2cdd659d717fc3c40b73c0 273 Pfam PF07024 ImpE protein 146 266 1.0E-45 T 11-10-2018 IPR009211 Predicted virulence protein, SciE type dqs_4043 c4dff9acaa2cdd659d717fc3c40b73c0 273 Gene3D G3DSA:1.25.40.10 7 94 1.6E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_4043 c4dff9acaa2cdd659d717fc3c40b73c0 273 PIRSF PIRSF029288 1 272 9.9E-95 T 11-10-2018 IPR009211 Predicted virulence protein, SciE type dqs_1302 e91ce7faf1c5c19e0e07417a04093a5f 263 Pfam PF03070 TENA/THI-4/PQQC family 33 247 9.8E-58 T 11-10-2018 IPR004305 Thiaminase-2/PQQC dqs_1302 e91ce7faf1c5c19e0e07417a04093a5f 263 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 26 253 2.9E-103 T 11-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 dqs_1302 e91ce7faf1c5c19e0e07417a04093a5f 263 Gene3D G3DSA:1.20.910.10 23 256 2.7E-66 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 dqs_1302 e91ce7faf1c5c19e0e07417a04093a5f 263 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 263 129.966 T 11-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 dqs_1302 e91ce7faf1c5c19e0e07417a04093a5f 263 SUPERFAMILY SSF48613 24 252 9.91E-72 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 dqs_0838 6c0bb4415f5a373aa63fd97bec4e3253 173 Pfam PF03602 Conserved hypothetical protein 95 1 168 5.9E-46 T 11-10-2018 dqs_0838 6c0bb4415f5a373aa63fd97bec4e3253 173 PIRSF PIRSF004553 1 172 6.1E-40 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 dqs_0838 6c0bb4415f5a373aa63fd97bec4e3253 173 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 110 116 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 dqs_0838 6c0bb4415f5a373aa63fd97bec4e3253 173 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 170 1.0E-40 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 dqs_0838 6c0bb4415f5a373aa63fd97bec4e3253 173 Gene3D G3DSA:3.40.50.150 1 173 4.2E-51 T 11-10-2018 dqs_0838 6c0bb4415f5a373aa63fd97bec4e3253 173 SUPERFAMILY SSF53335 2 169 1.94E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2911 a48266f9d12e04f99e853f22d2457e6b 66 Gene3D G3DSA:2.60.260.40 5 57 6.9E-9 T 11-10-2018 dqs_2911 a48266f9d12e04f99e853f22d2457e6b 66 Pfam PF10276 Zinc-finger domain 32 55 4.6E-7 T 11-10-2018 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1637 f5844be298fb228449e7eca0473a6cd1 472 Gene3D G3DSA:3.40.50.11290 211 308 9.3E-44 T 11-10-2018 dqs_1637 f5844be298fb228449e7eca0473a6cd1 472 Pfam PF14403 Circularly permuted ATP-grasp type 2 73 448 5.9E-165 T 11-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 dqs_1637 f5844be298fb228449e7eca0473a6cd1 472 SUPERFAMILY SSF56059 16 463 5.81E-65 T 11-10-2018 dqs_1637 f5844be298fb228449e7eca0473a6cd1 472 Gene3D G3DSA:3.30.1490.270 345 405 1.9E-25 T 11-10-2018 dqs_1637 f5844be298fb228449e7eca0473a6cd1 472 PIRSF PIRSF005522 1 472 1.7E-235 T 11-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 dqs_2620 cd24d626ba3fe406a7892a60c6f4aac0 487 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 371 487 6.2E-30 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain dqs_2620 cd24d626ba3fe406a7892a60c6f4aac0 487 Gene3D G3DSA:2.60.40.10 371 486 7.2E-31 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_2620 cd24d626ba3fe406a7892a60c6f4aac0 487 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 280 291 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_2620 cd24d626ba3fe406a7892a60c6f4aac0 487 Pfam PF12801 4Fe-4S binding domain 85 124 1.8E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_2620 cd24d626ba3fe406a7892a60c6f4aac0 487 SUPERFAMILY SSF54862 95 342 2.98E-26 T 11-10-2018 dqs_2620 cd24d626ba3fe406a7892a60c6f4aac0 487 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 31 484 3.2E-137 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 dqs_2620 cd24d626ba3fe406a7892a60c6f4aac0 487 Pfam PF13746 4Fe-4S dicluster domain 210 333 3.9E-41 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_0075 13f88c79c719dbcec136d96019779480 178 Pfam PF11161 Protein of unknown function (DUF2946) 13 177 1.1E-44 T 11-10-2018 IPR021332 Protein of unknown function DUF2944 dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 Gene3D G3DSA:3.30.70.20 2 102 2.0E-31 T 11-10-2018 dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 Pfam PF00037 4Fe-4S binding domain 34 56 1.9E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 107 2.1E-18 T 11-10-2018 IPR022569 Ferredoxin, C-terminal dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 SUPERFAMILY SSF54862 1 102 3.35E-25 T 11-10-2018 dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 6.0E-14 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 6.0E-14 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 6.0E-14 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 dqs_1139 44226a334ddc4bf8dbbcb51b46620df9 107 Pfam PF12800 4Fe-4S binding domain 7 23 0.048 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_2709 6e980004d62954d6f7f382fc1136ee52 296 SUPERFAMILY SSF103481 38 138 2.48E-10 T 11-10-2018 dqs_2709 6e980004d62954d6f7f382fc1136ee52 296 SUPERFAMILY SSF103481 190 285 1.96E-15 T 11-10-2018 dqs_2709 6e980004d62954d6f7f382fc1136ee52 296 Pfam PF00892 EamA-like transporter family 4 135 2.4E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_2709 6e980004d62954d6f7f382fc1136ee52 296 Pfam PF00892 EamA-like transporter family 148 281 1.0E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0177 42c917d42b03432cd9cd3a50ffc037ea 274 Pfam PF13230 Glutamine amidotransferases class-II 1 264 4.4E-127 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 dqs_0177 42c917d42b03432cd9cd3a50ffc037ea 274 SUPERFAMILY SSF56235 2 250 9.36E-50 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_0177 42c917d42b03432cd9cd3a50ffc037ea 274 Gene3D G3DSA:3.60.20.10 1 255 3.9E-97 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3275 37e0cb6268a771649f54ebcc85fa3f17 213 SUPERFAMILY SSF52540 1 208 9.49E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3275 37e0cb6268a771649f54ebcc85fa3f17 213 Pfam PF01712 Deoxynucleoside kinase 8 199 1.3E-33 T 11-10-2018 IPR031314 Deoxynucleoside kinase domain dqs_3275 37e0cb6268a771649f54ebcc85fa3f17 213 Gene3D G3DSA:3.40.50.300 7 203 3.5E-43 T 11-10-2018 dqs_3275 37e0cb6268a771649f54ebcc85fa3f17 213 PIRSF PIRSF000705 1 208 2.7E-58 T 11-10-2018 IPR002624 Deoxynucleoside kinase GO:0005524|GO:0006139|GO:0019206 dqs_3794 2d20135fb37f616d446bb31e188de041 199 Pfam PF05137 Fimbrial assembly protein (PilN) 100 174 1.9E-24 T 11-10-2018 IPR007813 Fimbrial assembly PilN dqs_3505 2f518e6c194eef6d0cbc49e340f0a3e0 127 SUPERFAMILY SSF53146 1 104 9.55E-20 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_3505 2f518e6c194eef6d0cbc49e340f0a3e0 127 Gene3D G3DSA:3.30.420.130 1 103 5.4E-11 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 SUPERFAMILY SSF58104 248 543 3.84E-72 T 11-10-2018 dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 Gene3D G3DSA:1.10.287.950 222 543 4.5E-69 T 11-10-2018 dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 343 509 4.1E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 Gene3D G3DSA:3.30.450.20 36 188 7.0E-42 T 11-10-2018 dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 SMART SM01049 34 132 2.1E-32 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 Pfam PF17200 Single Cache domain 2 39 186 2.9E-38 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 SMART SM00283 281 542 1.4E-79 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 295 324 2.4E-5 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0555 b1de05c0e1d9b2ba6ed26059c0de4124 543 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 408 437 2.4E-5 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2544 9b1ded8227baca53ab99d34783a41610 738 Gene3D G3DSA:2.170.130.10 31 167 3.9E-27 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_2544 9b1ded8227baca53ab99d34783a41610 738 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 158 3.1E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_2544 9b1ded8227baca53ab99d34783a41610 738 SUPERFAMILY SSF56935 40 738 4.76E-101 T 11-10-2018 dqs_2544 9b1ded8227baca53ab99d34783a41610 738 Gene3D G3DSA:2.40.170.20 168 738 2.9E-62 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2544 9b1ded8227baca53ab99d34783a41610 738 Pfam PF00593 TonB dependent receptor 258 737 1.2E-43 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_3358 ce9ee6131f780eabe13a39dc6c181cee 119 Pfam PF00816 H-NS histone family 10 113 3.8E-21 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 dqs_3358 ce9ee6131f780eabe13a39dc6c181cee 119 Gene3D G3DSA:4.10.430.10 63 119 4.2E-12 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 dqs_3358 ce9ee6131f780eabe13a39dc6c181cee 119 SUPERFAMILY SSF81273 77 119 2.31E-10 T 11-10-2018 dqs_3358 ce9ee6131f780eabe13a39dc6c181cee 119 SMART SM00528 74 119 3.6E-10 T 11-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 Pfam PF01565 FAD binding domain 29 162 2.3E-20 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 SUPERFAMILY SSF56194 221 347 2.22E-45 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 347 83.878 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 Gene3D G3DSA:3.30.465.10 84 236 5.6E-53 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 224 347 1.8E-34 T 11-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 Gene3D G3DSA:3.30.43.10 6 77 4.4E-17 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 Gene3D G3DSA:3.90.78.10 237 347 5.9E-43 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 SUPERFAMILY SSF56176 15 204 1.91E-38 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_3834 6660493778592bb0252bdd83581cd6fe 347 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 17 343 8.5E-61 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_1160 f44b72a78e21ab10e28a50424cb9ee49 163 Pfam PF02674 Colicin V production protein 4 143 5.5E-33 T 11-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 dqs_3373 078ffb4c9b221ac62dce7a7ac5eccac4 283 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 209 220 1.4E-29 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial dqs_3373 078ffb4c9b221ac62dce7a7ac5eccac4 283 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 198 208 1.4E-29 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial dqs_3373 078ffb4c9b221ac62dce7a7ac5eccac4 283 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 141 158 1.4E-29 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial dqs_3373 078ffb4c9b221ac62dce7a7ac5eccac4 283 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 221 236 1.4E-29 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial dqs_3373 078ffb4c9b221ac62dce7a7ac5eccac4 283 Pfam PF01478 Type IV leader peptidase family 133 241 2.0E-26 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 dqs_3373 078ffb4c9b221ac62dce7a7ac5eccac4 283 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 17 122 2.3E-33 T 11-10-2018 IPR010627 Peptidase A24A, N-terminal dqs_2314 cf333b88c4355f65c350ed4acc9a4714 216 Gene3D G3DSA:2.40.70.10 93 215 4.2E-29 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily dqs_2314 cf333b88c4355f65c350ed4acc9a4714 216 SUPERFAMILY SSF50630 102 203 8.23E-19 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily dqs_2314 cf333b88c4355f65c350ed4acc9a4714 216 Pfam PF13975 gag-polyprotein putative aspartyl protease 113 200 4.3E-23 T 11-10-2018 dqs_2314 cf333b88c4355f65c350ed4acc9a4714 216 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 97 213 5.3E-31 T 11-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal dqs_1835 d5f6aaff265b6ff5799396fa39549fd7 267 Gene3D G3DSA:1.10.472.150 21 143 7.5E-46 T 11-10-2018 dqs_1835 d5f6aaff265b6ff5799396fa39549fd7 267 Gene3D G3DSA:3.40.390.10 144 260 1.2E-39 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 dqs_1835 d5f6aaff265b6ff5799396fa39549fd7 267 Pfam PF06167 Glucose-regulated metallo-peptidase M90 18 245 7.5E-90 T 11-10-2018 IPR010384 MtfA family dqs_1835 d5f6aaff265b6ff5799396fa39549fd7 267 SUPERFAMILY SSF55486 41 247 7.32E-41 T 11-10-2018 dqs_1836 a8ed73f6ae72db8cf0691e2530d4e9bd 301 SUPERFAMILY SSF103481 201 298 4.84E-13 T 11-10-2018 dqs_1836 a8ed73f6ae72db8cf0691e2530d4e9bd 301 SUPERFAMILY SSF103481 45 148 3.01E-16 T 11-10-2018 dqs_1836 a8ed73f6ae72db8cf0691e2530d4e9bd 301 Pfam PF00892 EamA-like transporter family 160 296 2.5E-28 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_1836 a8ed73f6ae72db8cf0691e2530d4e9bd 301 Pfam PF00892 EamA-like transporter family 13 145 8.1E-26 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_4130 4519f8599ab3a610fb8349fee322c351 254 Pfam PF01925 Sulfite exporter TauE/SafE 12 247 1.4E-42 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 Gene3D G3DSA:3.30.420.150 110 289 3.2E-83 T 11-10-2018 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 Pfam PF02541 Ppx/GppA phosphatase family 22 301 9.7E-70 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 Gene3D G3DSA:3.30.420.40 7 297 3.2E-83 T 11-10-2018 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 SUPERFAMILY SSF53067 132 305 8.09E-43 T 11-10-2018 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 SUPERFAMILY SSF109604 307 491 4.97E-44 T 11-10-2018 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 Gene3D G3DSA:1.10.3210.10 304 495 1.0E-54 T 11-10-2018 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 PIRSF PIRSF001267 1 492 6.6E-194 T 11-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 SUPERFAMILY SSF53067 6 127 1.97E-34 T 11-10-2018 dqs_1840 9be259c7149b13c3b74e7207497ad919 500 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 6 300 4.1E-99 T 11-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 dqs_2555 6c973f623f198317708f374fffb88ce2 124 Pfam PF00072 Response regulator receiver domain 5 117 2.1E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2555 6c973f623f198317708f374fffb88ce2 124 SUPERFAMILY SSF52172 2 121 2.85E-39 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2555 6c973f623f198317708f374fffb88ce2 124 Gene3D G3DSA:3.40.50.12740 1 124 5.2E-45 T 11-10-2018 dqs_2555 6c973f623f198317708f374fffb88ce2 124 SMART SM00448 3 116 3.4E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 SUPERFAMILY SSF109604 344 495 4.5E-16 T 11-10-2018 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 Pfam PF05746 DALR anticodon binding domain 588 686 1.3E-7 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 693 1.7E-214 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 693 24.461 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 557 2.6E-203 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 52 64 3.2E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 251 266 3.2E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 3.2E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 399 418 3.2E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_0856 4b167f9ca4801d207bdc7d17d4eb7b06 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 323 339 3.2E-32 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 dqs_3395 d64f97a08a16381629212fd8074d0e4c 305 SUPERFAMILY SSF53448 9 261 1.21E-52 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3395 d64f97a08a16381629212fd8074d0e4c 305 Pfam PF00535 Glycosyl transferase family 2 11 133 8.6E-29 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_3395 d64f97a08a16381629212fd8074d0e4c 305 Gene3D G3DSA:3.90.550.10 2 229 2.8E-53 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1719 d54c50a2cffcd593be9d04c1e9a0b988 349 Pfam PF13177 DNA polymerase III, delta subunit 17 184 1.4E-39 T 11-10-2018 dqs_1719 d54c50a2cffcd593be9d04c1e9a0b988 349 SUPERFAMILY SSF52540 5 217 4.25E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1719 d54c50a2cffcd593be9d04c1e9a0b988 349 Gene3D G3DSA:3.40.50.300 2 184 1.1E-47 T 11-10-2018 dqs_1719 d54c50a2cffcd593be9d04c1e9a0b988 349 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 17 212 7.4E-58 T 11-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_2901 cfb7bd8a76c1d232466237e9ec972a35 223 Pfam PF01464 Transglycosylase SLT domain 94 185 4.9E-16 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 dqs_2901 cfb7bd8a76c1d232466237e9ec972a35 223 Gene3D G3DSA:1.10.530.10 74 204 2.6E-20 T 11-10-2018 dqs_2901 cfb7bd8a76c1d232466237e9ec972a35 223 SUPERFAMILY SSF53955 83 186 7.95E-27 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_2570 00b0cfe68007e272aa50529e2db0ef71 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 14 419 5.6E-103 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_2570 00b0cfe68007e272aa50529e2db0ef71 425 PIRSF PIRSF006066 1 425 3.2E-110 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_2570 00b0cfe68007e272aa50529e2db0ef71 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 4 414 1.0E-90 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit dqs_3390 5d9806411678dd12f63603b3b68b413c 411 SUPERFAMILY SSF53756 3 397 5.49E-24 T 11-10-2018 dqs_3390 5d9806411678dd12f63603b3b68b413c 411 Gene3D G3DSA:3.40.50.2000 215 385 3.4E-7 T 11-10-2018 dqs_3390 5d9806411678dd12f63603b3b68b413c 411 Gene3D G3DSA:3.40.50.2000 3 214 6.0E-12 T 11-10-2018 dqs_0064 04b005a07e6c534049b097f0405bdc52 256 SMART SM00862 159 236 3.5E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0064 04b005a07e6c534049b097f0405bdc52 256 SUPERFAMILY SSF52172 4 136 4.55E-41 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0064 04b005a07e6c534049b097f0405bdc52 256 Pfam PF00072 Response regulator receiver domain 7 118 4.5E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0064 04b005a07e6c534049b097f0405bdc52 256 SUPERFAMILY SSF46894 141 237 1.08E-22 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_0064 04b005a07e6c534049b097f0405bdc52 256 SMART SM00448 5 118 2.8E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0064 04b005a07e6c534049b097f0405bdc52 256 Pfam PF00486 Transcriptional regulatory protein, C terminal 164 236 4.9E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_0064 04b005a07e6c534049b097f0405bdc52 256 Gene3D G3DSA:1.10.10.10 131 241 5.5E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0064 04b005a07e6c534049b097f0405bdc52 256 Gene3D G3DSA:3.40.50.2300 1 130 8.4E-37 T 11-10-2018 dqs_1248 5d8fc4a8e610a7469fc1ce93bf4a9ba4 225 Gene3D G3DSA:1.10.150.20 43 87 7.3E-6 T 11-10-2018 dqs_1248 5d8fc4a8e610a7469fc1ce93bf4a9ba4 225 Pfam PF04002 RadC-like JAB domain 104 224 9.2E-41 T 11-10-2018 IPR025657 RadC-like JAB domain dqs_1248 5d8fc4a8e610a7469fc1ce93bf4a9ba4 225 SUPERFAMILY SSF47781 17 88 1.19E-10 T 11-10-2018 IPR010994 RuvA domain 2-like dqs_1248 5d8fc4a8e610a7469fc1ce93bf4a9ba4 225 Gene3D G3DSA:3.40.140.10 102 225 6.7E-39 T 11-10-2018 dqs_1248 5d8fc4a8e610a7469fc1ce93bf4a9ba4 225 SUPERFAMILY SSF102712 116 192 2.48E-6 T 11-10-2018 dqs_1248 5d8fc4a8e610a7469fc1ce93bf4a9ba4 225 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site dqs_1248 5d8fc4a8e610a7469fc1ce93bf4a9ba4 225 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 225 2.5E-66 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 dqs_3508 f370c164313b5fb3cefd3f05915c317b 294 SUPERFAMILY SSF51182 16 291 1.4E-85 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3508 f370c164313b5fb3cefd3f05915c317b 294 Gene3D G3DSA:2.60.120.10 28 286 2.1E-98 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3508 f370c164313b5fb3cefd3f05915c317b 294 Pfam PF05726 Pirin C-terminal cupin domain 187 290 2.4E-31 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 dqs_3508 f370c164313b5fb3cefd3f05915c317b 294 PIRSF PIRSF006232 13 294 4.1E-99 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 dqs_3508 f370c164313b5fb3cefd3f05915c317b 294 Gene3D G3DSA:2.60.120.10 154 260 2.1E-98 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3508 f370c164313b5fb3cefd3f05915c317b 294 Pfam PF02678 Pirin 32 132 4.2E-36 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 dqs_3708 fdff5ab1ccc084e0f8844db569997aff 351 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 6 339 2.0E-138 T 11-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 dqs_3708 fdff5ab1ccc084e0f8844db569997aff 351 Gene3D G3DSA:3.40.50.2000 5 153 9.9E-50 T 11-10-2018 dqs_3708 fdff5ab1ccc084e0f8844db569997aff 351 SUPERFAMILY SSF53756 5 339 9.42E-96 T 11-10-2018 dqs_3708 fdff5ab1ccc084e0f8844db569997aff 351 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 76 320 1.2E-66 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 dqs_3708 fdff5ab1ccc084e0f8844db569997aff 351 Gene3D G3DSA:3.40.50.2000 166 341 3.3E-55 T 11-10-2018 dqs_0997 19c9deebde2bd834591e5146963c5d45 271 SUPERFAMILY SSF48452 60 214 3.26E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0997 19c9deebde2bd834591e5146963c5d45 271 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 8 256 1.5E-60 T 11-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW dqs_0997 19c9deebde2bd834591e5146963c5d45 271 Gene3D G3DSA:1.25.40.10 48 269 6.5E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0997 19c9deebde2bd834591e5146963c5d45 271 Pfam PF13432 Tetratricopeptide repeat 59 122 6.2E-5 T 11-10-2018 dqs_0997 19c9deebde2bd834591e5146963c5d45 271 Pfam PF13432 Tetratricopeptide repeat 168 220 8.5E-4 T 11-10-2018 dqs_0997 19c9deebde2bd834591e5146963c5d45 271 SMART SM00028 192 225 260.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0997 19c9deebde2bd834591e5146963c5d45 271 SMART SM00028 158 191 0.21 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0997 19c9deebde2bd834591e5146963c5d45 271 SMART SM00028 54 87 180.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_0997 19c9deebde2bd834591e5146963c5d45 271 SMART SM00028 88 121 0.06 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_3383 c473bab6c9284bdf52c86420fb1bf1be 526 SUPERFAMILY SSF56801 5 524 5.49E-140 T 11-10-2018 dqs_3383 c473bab6c9284bdf52c86420fb1bf1be 526 Gene3D G3DSA:3.30.300.30 425 526 5.8E-24 T 11-10-2018 dqs_3383 c473bab6c9284bdf52c86420fb1bf1be 526 Pfam PF00501 AMP-binding enzyme 13 431 1.9E-95 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_3383 c473bab6c9284bdf52c86420fb1bf1be 526 Gene3D G3DSA:3.40.50.12780 1 424 3.1E-105 T 11-10-2018 dqs_3383 c473bab6c9284bdf52c86420fb1bf1be 526 Pfam PF13193 AMP-binding enzyme C-terminal domain 440 516 5.9E-12 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain dqs_3383 c473bab6c9284bdf52c86420fb1bf1be 526 ProSitePatterns PS00455 Putative AMP-binding domain signature. 171 182 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_3383 c473bab6c9284bdf52c86420fb1bf1be 526 TIGRFAM TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated 6 525 1.1E-248 T 11-10-2018 IPR017529 Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated dqs_2228 3337095877b784c2344bcbc86e87e5ac 505 Pfam PF05787 Bacterial protein of unknown function (DUF839) 166 491 2.1E-58 T 11-10-2018 IPR008557 Protein of unknown function DUF839 dqs_2228 3337095877b784c2344bcbc86e87e5ac 505 Pfam PF05787 Bacterial protein of unknown function (DUF839) 53 158 7.9E-7 T 11-10-2018 IPR008557 Protein of unknown function DUF839 dqs_2228 3337095877b784c2344bcbc86e87e5ac 505 SUPERFAMILY SSF63829 354 486 2.48E-6 T 11-10-2018 dqs_3240 98c53e769409ee64b02f9c86c24deb33 314 SMART SM00382 41 221 6.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3240 98c53e769409ee64b02f9c86c24deb33 314 Gene3D G3DSA:3.40.50.300 6 240 7.5E-66 T 11-10-2018 dqs_3240 98c53e769409ee64b02f9c86c24deb33 314 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3240 98c53e769409ee64b02f9c86c24deb33 314 SUPERFAMILY SSF52540 16 235 1.16E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3240 98c53e769409ee64b02f9c86c24deb33 314 Pfam PF00005 ABC transporter 33 172 2.9E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1554 7cbe371f4ba5dd7674220e18d542161b 442 Pfam PF08668 HDOD domain 254 361 8.8E-11 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_1554 7cbe371f4ba5dd7674220e18d542161b 442 Gene3D G3DSA:1.10.3210.10 238 411 7.8E-19 T 11-10-2018 dqs_1554 7cbe371f4ba5dd7674220e18d542161b 442 SUPERFAMILY SSF109604 226 439 1.1E-30 T 11-10-2018 dqs_2672 a76f43e1ec65f4137cd65413c8256244 167 Gene3D G3DSA:3.10.450.50 3 167 8.3E-37 T 11-10-2018 dqs_2672 a76f43e1ec65f4137cd65413c8256244 167 SUPERFAMILY SSF54427 8 167 4.69E-47 T 11-10-2018 IPR032710 NTF2-like domain superfamily dqs_2672 a76f43e1ec65f4137cd65413c8256244 167 Pfam PF13577 SnoaL-like domain 15 150 5.2E-10 T 11-10-2018 IPR037401 SnoaL-like domain dqs_3675 fe3d698a04fd1e734daafadafaffd030 402 SUPERFAMILY SSF111342 21 306 1.83E-76 T 11-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 dqs_3675 fe3d698a04fd1e734daafadafaffd030 402 Pfam PF01888 CbiD 27 289 8.8E-83 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 dqs_3675 fe3d698a04fd1e734daafadafaffd030 402 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 26 381 25.828 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 dqs_3675 fe3d698a04fd1e734daafadafaffd030 402 Gene3D G3DSA:3.30.2110.10 28 203 1.0E-41 T 11-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 dqs_3675 fe3d698a04fd1e734daafadafaffd030 402 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 36 375 3.7E-62 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 dqs_3675 fe3d698a04fd1e734daafadafaffd030 402 PIRSF PIRSF026782 22 387 3.1E-98 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 SMART SM00267 348 525 4.1E-57 T 11-10-2018 IPR000160 GGDEF domain dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 Pfam PF00563 EAL domain 541 776 2.2E-75 T 11-10-2018 IPR001633 EAL domain dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 Pfam PF00990 Diguanylate cyclase, GGDEF domain 359 521 1.2E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 356 524 2.1E-43 T 11-10-2018 IPR000160 GGDEF domain dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 SUPERFAMILY SSF55785 216 346 2.79E-17 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 Pfam PF08447 PAS fold 257 335 4.2E-13 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 Gene3D G3DSA:3.30.450.20 228 345 7.3E-24 T 11-10-2018 dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 SUPERFAMILY SSF55073 364 527 9.94E-50 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 SUPERFAMILY SSF141868 540 776 5.89E-91 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 Gene3D G3DSA:3.30.70.270 353 538 2.4E-64 T 11-10-2018 dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 Gene3D G3DSA:3.20.20.450 539 784 5.2E-100 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 228 354 8.5E-9 T 11-10-2018 IPR000014 PAS domain dqs_1821 9a171edaad6da430396dbd3716d7e23a 790 SMART SM00052 535 781 4.3E-113 T 11-10-2018 IPR001633 EAL domain dqs_2873 1c62aa34260c05666ca3c8ef25f0628e 224 Pfam PF13861 FlgD Tudor-like domain 91 221 1.5E-9 T 11-10-2018 IPR025963 FlgD Tudor-like domain dqs_2873 1c62aa34260c05666ca3c8ef25f0628e 224 Gene3D G3DSA:2.60.40.4070 105 190 2.5E-30 T 11-10-2018 dqs_2873 1c62aa34260c05666ca3c8ef25f0628e 224 Pfam PF03963 Flagellar hook capping protein - N-terminal region 7 79 1.7E-22 T 11-10-2018 IPR005648 Flagellar hook capping protein dqs_2873 1c62aa34260c05666ca3c8ef25f0628e 224 Pfam PF13860 FlgD Ig-like domain 107 181 9.9E-21 T 11-10-2018 IPR025965 FlgD Ig-like domain dqs_2873 1c62aa34260c05666ca3c8ef25f0628e 224 Gene3D G3DSA:2.30.30.910 91 218 2.5E-30 T 11-10-2018 dqs_2369 a3becee50b3aef0b2faa6a983907239f 340 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 157 166 - T 11-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 dqs_2369 a3becee50b3aef0b2faa6a983907239f 340 SUPERFAMILY SSF51445 33 339 2.06E-76 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_2369 a3becee50b3aef0b2faa6a983907239f 340 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 38 310 3.8E-44 T 11-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 dqs_2369 a3becee50b3aef0b2faa6a983907239f 340 Gene3D G3DSA:3.20.20.80 29 340 6.4E-88 T 11-10-2018 dqs_0664 0dac1d09e70bd3a8f0645d4fd3895e66 303 Pfam PF00589 Phage integrase family 119 287 6.9E-39 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 dqs_0664 0dac1d09e70bd3a8f0645d4fd3895e66 303 Gene3D G3DSA:1.10.443.10 117 295 3.4E-51 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 dqs_0664 0dac1d09e70bd3a8f0645d4fd3895e66 303 SUPERFAMILY SSF56349 14 294 5.59E-53 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 dqs_0664 0dac1d09e70bd3a8f0645d4fd3895e66 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 14 301 55.157 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD dqs_0664 0dac1d09e70bd3a8f0645d4fd3895e66 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 17 95 1.8E-17 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 dqs_0664 0dac1d09e70bd3a8f0645d4fd3895e66 303 Gene3D G3DSA:1.10.150.130 13 104 3.4E-16 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal dqs_1511 4eb65cbb7ba9797b5ad9c8e2f8ebfdea 273 Pfam PF00809 Pterin binding enzyme 19 257 9.7E-81 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_1511 4eb65cbb7ba9797b5ad9c8e2f8ebfdea 273 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 18 272 5.1E-94 T 11-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 dqs_1511 4eb65cbb7ba9797b5ad9c8e2f8ebfdea 273 Gene3D G3DSA:3.20.20.20 2 273 1.3E-102 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_1511 4eb65cbb7ba9797b5ad9c8e2f8ebfdea 273 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 52 65 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_1511 4eb65cbb7ba9797b5ad9c8e2f8ebfdea 273 SUPERFAMILY SSF51717 5 272 1.23E-97 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_3126 f4c9067f66ef85abb76379f999a746fd 208 Pfam PF00857 Isochorismatase family 14 165 1.2E-22 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 dqs_3126 f4c9067f66ef85abb76379f999a746fd 208 Gene3D G3DSA:3.40.50.850 1 208 4.7E-60 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 dqs_3126 f4c9067f66ef85abb76379f999a746fd 208 SUPERFAMILY SSF52499 4 203 4.97E-54 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 dqs_0374 091f6c16183e2be08561ff32e18986e4 223 Gene3D G3DSA:3.40.50.1820 4 217 1.5E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0374 091f6c16183e2be08561ff32e18986e4 223 SUPERFAMILY SSF53474 6 213 1.47E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0374 091f6c16183e2be08561ff32e18986e4 223 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 52 129 4.6E-10 T 11-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 dqs_2443 c72e9a3e8d4982f3360b03b35d61414c 317 Hamap MF_00524 Glucokinase [glk]. 2 312 32.505 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 dqs_2443 c72e9a3e8d4982f3360b03b35d61414c 317 SUPERFAMILY SSF53067 1 313 3.11E-59 T 11-10-2018 dqs_2443 c72e9a3e8d4982f3360b03b35d61414c 317 Pfam PF02685 Glucokinase 4 310 9.9E-95 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 dqs_2443 c72e9a3e8d4982f3360b03b35d61414c 317 Gene3D G3DSA:3.40.367.20 99 295 4.5E-98 T 11-10-2018 dqs_2443 c72e9a3e8d4982f3360b03b35d61414c 317 Gene3D G3DSA:3.30.420.40 3 306 4.5E-98 T 11-10-2018 dqs_2443 c72e9a3e8d4982f3360b03b35d61414c 317 TIGRFAM TIGR00749 glk: glucokinase 4 306 4.9E-69 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 dqs_2824 9ae6ef0f2023a1a0bf2942c402f6e1f9 137 Pfam PF04352 ProQ/FINO family 15 112 3.5E-21 T 11-10-2018 IPR016103 ProQ/FinO domain dqs_2824 9ae6ef0f2023a1a0bf2942c402f6e1f9 137 SMART SM00945 10 116 8.2E-22 T 11-10-2018 IPR016103 ProQ/FinO domain dqs_2824 9ae6ef0f2023a1a0bf2942c402f6e1f9 137 Gene3D G3DSA:1.10.1710.10 2 104 2.2E-28 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily dqs_2824 9ae6ef0f2023a1a0bf2942c402f6e1f9 137 SUPERFAMILY SSF48657 7 105 1.7E-27 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily dqs_0878 3c22c5cef85d933638ff55e5a093211a 157 Pfam PF02470 MlaD protein 40 116 2.3E-21 T 11-10-2018 IPR003399 Mce/MlaD dqs_0878 3c22c5cef85d933638ff55e5a093211a 157 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 147 4.6E-56 T 11-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 dqs_0535 153036bf065e6479a9167f5fe6756fe6 149 Gene3D G3DSA:3.40.30.10 2 115 1.0E-17 T 11-10-2018 dqs_0535 153036bf065e6479a9167f5fe6756fe6 149 TIGRFAM TIGR01616 nitro_assoc: nitrogenase-associated protein 6 111 2.5E-36 T 11-10-2018 IPR006503 Nitrogenase-associated protein dqs_0535 153036bf065e6479a9167f5fe6756fe6 149 SUPERFAMILY SSF52833 7 114 1.86E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0916 523c1cf4ae51ff3d0df0b3176b81d62d 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 74 7.1E-20 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0916 523c1cf4ae51ff3d0df0b3176b81d62d 225 Pfam PF16859 Bacterial transcriptional repressor C-terminal 101 187 8.7E-9 T 11-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal dqs_0916 523c1cf4ae51ff3d0df0b3176b81d62d 225 SUPERFAMILY SSF46689 15 92 1.4E-21 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0916 523c1cf4ae51ff3d0df0b3176b81d62d 225 Gene3D G3DSA:1.10.357.10 71 219 1.4E-22 T 11-10-2018 dqs_0916 523c1cf4ae51ff3d0df0b3176b81d62d 225 SUPERFAMILY SSF48498 96 217 5.09E-20 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_0916 523c1cf4ae51ff3d0df0b3176b81d62d 225 Gene3D G3DSA:1.10.10.60 10 70 2.8E-23 T 11-10-2018 dqs_0916 523c1cf4ae51ff3d0df0b3176b81d62d 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 3.9E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0916 523c1cf4ae51ff3d0df0b3176b81d62d 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 3.9E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_2602 08081a6e5e788f98f431a67fd061c3a9 173 Pfam PF00196 Bacterial regulatory proteins, luxR family 106 159 5.1E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2602 08081a6e5e788f98f431a67fd061c3a9 173 Gene3D G3DSA:1.10.10.10 19 170 1.7E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2602 08081a6e5e788f98f431a67fd061c3a9 173 ProSitePatterns PS00622 LuxR-type HTH domain signature. 121 148 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2602 08081a6e5e788f98f431a67fd061c3a9 173 SUPERFAMILY SSF46894 98 163 8.5E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_2602 08081a6e5e788f98f431a67fd061c3a9 173 SMART SM00421 104 161 1.9E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2602 08081a6e5e788f98f431a67fd061c3a9 173 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 137 149 2.4E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2602 08081a6e5e788f98f431a67fd061c3a9 173 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 107 121 2.4E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2602 08081a6e5e788f98f431a67fd061c3a9 173 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 121 137 2.4E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_3088 af5e1d59ca5147d4ba9ca03ae4abc0ac 427 SUPERFAMILY SSF56954 9 425 1.7E-61 T 11-10-2018 dqs_3088 af5e1d59ca5147d4ba9ca03ae4abc0ac 427 Pfam PF02321 Outer membrane efflux protein 41 223 5.2E-16 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_3088 af5e1d59ca5147d4ba9ca03ae4abc0ac 427 Pfam PF02321 Outer membrane efflux protein 247 424 1.2E-21 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_3088 af5e1d59ca5147d4ba9ca03ae4abc0ac 427 Gene3D G3DSA:1.20.1600.10 37 425 1.4E-57 T 11-10-2018 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 SUPERFAMILY SSF52374 12 339 5.14E-81 T 11-10-2018 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 12 339 7.1E-90 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 Gene3D G3DSA:3.40.50.620 13 339 8.4E-112 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 Pfam PF00579 tRNA synthetases class I (W and Y) 13 292 6.5E-52 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 20 29 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 Gene3D G3DSA:1.10.240.10 205 307 8.4E-112 T 11-10-2018 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 159 180 8.9E-18 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 76 95 8.9E-18 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 24 40 8.9E-18 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 210 220 8.9E-18 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 SUPERFAMILY SSF160113 360 406 3.53E-8 T 11-10-2018 IPR036913 YegP-like superfamily dqs_3840 dec872dbbea1b67fd25cbdb5d35f1c72 445 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 11 340 36.476 T 11-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 dqs_0428 ad238d4ed407683483cd15358048f635 427 Gene3D G3DSA:3.40.50.10070 23 162 1.8E-28 T 11-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 dqs_0428 ad238d4ed407683483cd15358048f635 427 Gene3D G3DSA:2.120.10.30 163 427 1.8E-91 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like dqs_0428 ad238d4ed407683483cd15358048f635 427 SUPERFAMILY SSF69304 152 423 9.42E-60 T 11-10-2018 dqs_0428 ad238d4ed407683483cd15358048f635 427 SUPERFAMILY SSF52964 32 159 7.59E-29 T 11-10-2018 dqs_0428 ad238d4ed407683483cd15358048f635 427 Pfam PF04052 TolB amino-terminal domain 27 127 5.5E-21 T 11-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 dqs_0428 ad238d4ed407683483cd15358048f635 427 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 8 421 45.477 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 dqs_0428 ad238d4ed407683483cd15358048f635 427 Pfam PF07676 WD40-like Beta Propeller Repeat 236 266 8.9E-4 T 11-10-2018 IPR011659 WD40-like Beta Propeller dqs_0428 ad238d4ed407683483cd15358048f635 427 Pfam PF07676 WD40-like Beta Propeller Repeat 196 223 5.3E-5 T 11-10-2018 IPR011659 WD40-like Beta Propeller dqs_0428 ad238d4ed407683483cd15358048f635 427 Pfam PF07676 WD40-like Beta Propeller Repeat 367 393 0.0016 T 11-10-2018 IPR011659 WD40-like Beta Propeller dqs_0428 ad238d4ed407683483cd15358048f635 427 Pfam PF07676 WD40-like Beta Propeller Repeat 276 311 2.1E-16 T 11-10-2018 IPR011659 WD40-like Beta Propeller dqs_0428 ad238d4ed407683483cd15358048f635 427 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 20 422 6.6E-154 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 dqs_1684 ac2f2bba7d4437e78bcb0f306d11d085 164 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 3 159 1.4E-49 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 dqs_1684 ac2f2bba7d4437e78bcb0f306d11d085 164 Gene3D G3DSA:3.40.50.300 5 157 7.0E-60 T 11-10-2018 dqs_1684 ac2f2bba7d4437e78bcb0f306d11d085 164 SUPERFAMILY SSF52540 1 161 2.44E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1684 ac2f2bba7d4437e78bcb0f306d11d085 164 Gene3D G3DSA:2.20.25.120 47 79 7.0E-60 T 11-10-2018 dqs_1684 ac2f2bba7d4437e78bcb0f306d11d085 164 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 3 135 1.2E-54 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 dqs_0408 e0526de712734a5b0187d616f95fbafc 61 Pfam PF06945 Protein of unknown function (DUF1289) 7 31 1.3E-8 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 dqs_1370 fd6231dd442b5bbda3756947ff0aaf55 359 SUPERFAMILY SSF53850 39 345 4.46E-61 T 11-10-2018 dqs_1370 fd6231dd442b5bbda3756947ff0aaf55 359 Gene3D G3DSA:3.40.190.10 41 321 6.7E-57 T 11-10-2018 dqs_1370 fd6231dd442b5bbda3756947ff0aaf55 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 42 58 8.4E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 dqs_1370 fd6231dd442b5bbda3756947ff0aaf55 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 138 154 8.4E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 dqs_1370 fd6231dd442b5bbda3756947ff0aaf55 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 58 79 8.4E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 dqs_1370 fd6231dd442b5bbda3756947ff0aaf55 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 267 286 8.4E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 dqs_1370 fd6231dd442b5bbda3756947ff0aaf55 359 Gene3D G3DSA:3.40.190.10 147 274 6.7E-57 T 11-10-2018 dqs_1370 fd6231dd442b5bbda3756947ff0aaf55 359 Pfam PF13416 Bacterial extracellular solute-binding protein 52 324 1.4E-34 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein dqs_1729 1cce7608c92dea1edd505e9d80fbd3d0 830 Pfam PF02687 FtsX-like permease family 735 821 1.1E-5 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_1729 1cce7608c92dea1edd505e9d80fbd3d0 830 Pfam PF02687 FtsX-like permease family 288 383 6.1E-10 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_0849 5fb913490f8a0cff8898b45855493cd8 327 SUPERFAMILY SSF52540 104 283 1.51E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0849 5fb913490f8a0cff8898b45855493cd8 327 Pfam PF02562 PhoH-like protein 105 308 3.9E-93 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 dqs_0849 5fb913490f8a0cff8898b45855493cd8 327 Gene3D G3DSA:3.40.50.300 102 308 7.4E-73 T 11-10-2018 dqs_3709 751332ba54da840146ffb57db2c01c0d 363 SUPERFAMILY SSF53756 1 357 2.23E-79 T 11-10-2018 dqs_3709 751332ba54da840146ffb57db2c01c0d 363 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 75 321 9.7E-71 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 dqs_3709 751332ba54da840146ffb57db2c01c0d 363 Gene3D G3DSA:3.40.50.2000 1 160 2.6E-58 T 11-10-2018 dqs_3709 751332ba54da840146ffb57db2c01c0d 363 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 306 4.3E-108 T 11-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 dqs_3709 751332ba54da840146ffb57db2c01c0d 363 Gene3D G3DSA:3.40.50.2000 173 316 1.4E-44 T 11-10-2018 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 Gene3D G3DSA:1.10.275.10 42 246 2.5E-186 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00145 Argininosuccinate lyase family signature 292 308 3.8E-68 T 11-10-2018 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00145 Argininosuccinate lyase family signature 327 346 3.8E-68 T 11-10-2018 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00145 Argininosuccinate lyase family signature 159 179 3.8E-68 T 11-10-2018 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00145 Argininosuccinate lyase family signature 248 272 3.8E-68 T 11-10-2018 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00145 Argininosuccinate lyase family signature 118 140 3.8E-68 T 11-10-2018 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00145 Argininosuccinate lyase family signature 210 226 3.8E-68 T 11-10-2018 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 SUPERFAMILY SSF48557 21 479 5.97E-146 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 Pfam PF00206 Lyase 23 317 3.2E-77 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00149 Fumarate lyase superfamily signature 292 308 1.0E-29 T 11-10-2018 IPR000362 Fumarate lyase family dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00149 Fumarate lyase superfamily signature 119 137 1.0E-29 T 11-10-2018 IPR000362 Fumarate lyase family dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00149 Fumarate lyase superfamily signature 164 182 1.0E-29 T 11-10-2018 IPR000362 Fumarate lyase family dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 PRINTS PR00149 Fumarate lyase superfamily signature 248 275 1.0E-29 T 11-10-2018 IPR000362 Fumarate lyase family dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 TIGRFAM TIGR00838 argH: argininosuccinate lyase 21 479 2.9E-182 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 Gene3D G3DSA:1.20.200.10 136 471 2.5E-186 T 11-10-2018 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 ProSitePatterns PS00163 Fumarate lyases signature. 292 301 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 Hamap MF_00006 Argininosuccinate lyase [argH]. 19 477 42.826 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 Pfam PF14698 Argininosuccinate lyase C-terminal 380 454 2.0E-20 T 11-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 dqs_1090 83f4f3de0013dd10390f2f871bb5404c 480 Gene3D G3DSA:1.10.40.30 377 456 2.5E-186 T 11-10-2018 dqs_2121 351ce5eba9a436b60729e63840e6682e 294 SUPERFAMILY SSF54593 1 123 2.75E-21 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2121 351ce5eba9a436b60729e63840e6682e 294 Gene3D G3DSA:3.10.180.10 2 128 3.8E-33 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2121 351ce5eba9a436b60729e63840e6682e 294 SUPERFAMILY SSF54593 137 291 2.69E-34 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2121 351ce5eba9a436b60729e63840e6682e 294 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 145 264 5.9E-22 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_2121 351ce5eba9a436b60729e63840e6682e 294 Gene3D G3DSA:3.10.180.10 135 294 1.4E-49 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2401 60eab75930f5e724fa2b3dfe15d99fe1 673 Gene3D G3DSA:1.10.287.950 344 673 2.3E-76 T 11-10-2018 dqs_2401 60eab75930f5e724fa2b3dfe15d99fe1 673 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 457 639 1.0E-46 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_2401 60eab75930f5e724fa2b3dfe15d99fe1 673 Pfam PF00672 HAMP domain 345 389 4.6E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2401 60eab75930f5e724fa2b3dfe15d99fe1 673 SMART SM00304 344 396 1.1E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2401 60eab75930f5e724fa2b3dfe15d99fe1 673 SMART SM00283 411 672 1.1E-81 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_2401 60eab75930f5e724fa2b3dfe15d99fe1 673 SUPERFAMILY SSF58104 364 673 6.8E-76 T 11-10-2018 dqs_4033 967904a9328e29cb122b5513ecf2e8b2 233 Gene3D G3DSA:3.40.1730.10 5 231 8.7E-69 T 11-10-2018 IPR038225 T6S-associated protein TagF superfamily dqs_4033 967904a9328e29cb122b5513ecf2e8b2 233 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 9 141 3.1E-38 T 11-10-2018 IPR017748 T6S-associated protein TagF dqs_4033 967904a9328e29cb122b5513ecf2e8b2 233 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 9 141 6.8E-46 T 11-10-2018 IPR017748 T6S-associated protein TagF dqs_4033 967904a9328e29cb122b5513ecf2e8b2 233 PIRSF PIRSF029287 4 232 1.3E-48 T 11-10-2018 IPR017748 T6S-associated protein TagF dqs_3947 52783d492379d447af2b45f3dc937650 290 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 57 158 4.5E-13 T 11-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal dqs_3947 52783d492379d447af2b45f3dc937650 290 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 170 286 8.1E-45 T 11-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal dqs_3947 52783d492379d447af2b45f3dc937650 290 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 57 146 3.0E-10 T 11-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal dqs_3947 52783d492379d447af2b45f3dc937650 290 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 170 282 2.0E-31 T 11-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal dqs_3947 52783d492379d447af2b45f3dc937650 290 Gene3D G3DSA:3.30.1370.140 53 149 9.1E-19 T 11-10-2018 IPR038527 HupH, C-terminal domain superfamily dqs_3947 52783d492379d447af2b45f3dc937650 290 Gene3D G3DSA:3.30.1370.140 169 266 4.4E-29 T 11-10-2018 IPR038527 HupH, C-terminal domain superfamily dqs_0538 8035370900490aec21bae4860290ebb0 116 SUPERFAMILY SSF54292 1 115 1.94E-12 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_0538 8035370900490aec21bae4860290ebb0 116 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_0538 8035370900490aec21bae4860290ebb0 116 Gene3D G3DSA:3.10.20.30 1 116 6.9E-30 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_0538 8035370900490aec21bae4860290ebb0 116 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 106 5.7E-13 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_0263 740e0779252f168af91ba9900fa9102f 242 SUPERFAMILY SSF63380 12 107 3.4E-20 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_0263 740e0779252f168af91ba9900fa9102f 242 Pfam PF00175 Oxidoreductase NAD-binding domain 121 218 6.8E-6 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_0263 740e0779252f168af91ba9900fa9102f 242 SUPERFAMILY SSF52343 109 228 4.71E-23 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_0263 740e0779252f168af91ba9900fa9102f 242 Gene3D G3DSA:3.40.50.80 110 236 1.4E-22 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_0263 740e0779252f168af91ba9900fa9102f 242 PRINTS PR00409 Phthalate dioxygenase reductase family signature 145 154 3.9E-26 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0263 740e0779252f168af91ba9900fa9102f 242 PRINTS PR00409 Phthalate dioxygenase reductase family signature 205 213 3.9E-26 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0263 740e0779252f168af91ba9900fa9102f 242 PRINTS PR00409 Phthalate dioxygenase reductase family signature 120 139 3.9E-26 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0263 740e0779252f168af91ba9900fa9102f 242 PRINTS PR00409 Phthalate dioxygenase reductase family signature 49 61 3.9E-26 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0263 740e0779252f168af91ba9900fa9102f 242 PRINTS PR00409 Phthalate dioxygenase reductase family signature 61 75 3.9E-26 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0263 740e0779252f168af91ba9900fa9102f 242 PRINTS PR00409 Phthalate dioxygenase reductase family signature 98 112 3.9E-26 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0263 740e0779252f168af91ba9900fa9102f 242 PRINTS PR00409 Phthalate dioxygenase reductase family signature 39 49 3.9E-26 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_0263 740e0779252f168af91ba9900fa9102f 242 Gene3D G3DSA:2.40.30.10 10 108 2.1E-19 T 11-10-2018 dqs_2137 622027ed00789679c87379a349b2eb98 325 Pfam PF00175 Oxidoreductase NAD-binding domain 120 208 6.4E-6 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_2137 622027ed00789679c87379a349b2eb98 325 SUPERFAMILY SSF54292 218 323 4.46E-26 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2137 622027ed00789679c87379a349b2eb98 325 Gene3D G3DSA:3.40.50.80 110 228 8.5E-29 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2137 622027ed00789679c87379a349b2eb98 325 Gene3D G3DSA:3.10.20.30 230 325 9.9E-23 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2137 622027ed00789679c87379a349b2eb98 325 SUPERFAMILY SSF63380 4 104 5.91E-19 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_2137 622027ed00789679c87379a349b2eb98 325 SUPERFAMILY SSF52343 102 232 5.37E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_2137 622027ed00789679c87379a349b2eb98 325 PRINTS PR00409 Phthalate dioxygenase reductase family signature 144 153 2.2E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_2137 622027ed00789679c87379a349b2eb98 325 PRINTS PR00409 Phthalate dioxygenase reductase family signature 38 50 2.2E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_2137 622027ed00789679c87379a349b2eb98 325 PRINTS PR00409 Phthalate dioxygenase reductase family signature 196 204 2.2E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_2137 622027ed00789679c87379a349b2eb98 325 PRINTS PR00409 Phthalate dioxygenase reductase family signature 28 38 2.2E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_2137 622027ed00789679c87379a349b2eb98 325 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 254 316 2.2E-8 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_2137 622027ed00789679c87379a349b2eb98 325 Gene3D G3DSA:2.40.30.10 2 105 1.6E-22 T 11-10-2018 dqs_2137 622027ed00789679c87379a349b2eb98 325 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 274 282 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_1136 3f0cd07a37f988c455a3dbf67020a489 283 PIRSF PIRSF000105 1 283 1.4E-87 T 11-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 dqs_1136 3f0cd07a37f988c455a3dbf67020a489 283 Gene3D G3DSA:1.10.1040.50 190 283 9.7E-33 T 11-10-2018 dqs_1136 3f0cd07a37f988c455a3dbf67020a489 283 SUPERFAMILY SSF48179 185 282 1.19E-31 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_1136 3f0cd07a37f988c455a3dbf67020a489 283 SUPERFAMILY SSF51735 1 185 2.32E-61 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1136 3f0cd07a37f988c455a3dbf67020a489 283 Gene3D G3DSA:3.40.50.720 1 189 3.0E-74 T 11-10-2018 dqs_1136 3f0cd07a37f988c455a3dbf67020a489 283 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 282 1.3E-34 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_1136 3f0cd07a37f988c455a3dbf67020a489 283 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 183 1.7E-67 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_0005 1b06e00fd34050d2c91d244c3a1f8267 286 SUPERFAMILY SSF116734 19 108 7.36E-16 T 11-10-2018 dqs_0005 1b06e00fd34050d2c91d244c3a1f8267 286 Pfam PF01420 Type I restriction modification DNA specificity domain 109 263 6.0E-17 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 dqs_0005 1b06e00fd34050d2c91d244c3a1f8267 286 Pfam PF01420 Type I restriction modification DNA specificity domain 19 80 9.8E-6 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 dqs_0005 1b06e00fd34050d2c91d244c3a1f8267 286 SUPERFAMILY SSF116734 100 285 3.92E-31 T 11-10-2018 dqs_0005 1b06e00fd34050d2c91d244c3a1f8267 286 Gene3D G3DSA:3.90.220.20 7 97 3.0E-14 T 11-10-2018 dqs_0005 1b06e00fd34050d2c91d244c3a1f8267 286 Gene3D G3DSA:1.10.287.1120 236 286 2.0E-9 T 11-10-2018 dqs_0005 1b06e00fd34050d2c91d244c3a1f8267 286 Gene3D G3DSA:3.90.220.20 98 234 3.0E-19 T 11-10-2018 dqs_2939 0f60ed06acfe384548b77f749efb0f92 99 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 25 96 1.9E-6 T 11-10-2018 dqs_2939 0f60ed06acfe384548b77f749efb0f92 99 PIRSF PIRSF036548 4 99 9.1E-40 T 11-10-2018 IPR012206 Ferredoxin-like, FixX GO:0005506 dqs_2939 0f60ed06acfe384548b77f749efb0f92 99 SUPERFAMILY SSF54862 35 97 8.37E-11 T 11-10-2018 dqs_2939 0f60ed06acfe384548b77f749efb0f92 99 Gene3D G3DSA:3.30.70.20 10 93 7.0E-12 T 11-10-2018 dqs_1855 cec0fcce9e8bacb6161a8cd527936d88 99 Pfam PF03795 YCII-related domain 1 95 2.0E-26 T 11-10-2018 IPR005545 YCII-related dqs_1855 cec0fcce9e8bacb6161a8cd527936d88 99 Gene3D G3DSA:3.30.70.1060 1 98 2.1E-35 T 11-10-2018 dqs_1855 cec0fcce9e8bacb6161a8cd527936d88 99 SUPERFAMILY SSF54909 1 97 4.83E-30 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_0607 884e13b7c307be7b1d351da880c67526 586 Pfam PF03382 Mycoplasma protein of unknown function, DUF285 412 519 4.9E-10 T 11-10-2018 IPR005046 Protein of unknown function DUF285 dqs_0607 884e13b7c307be7b1d351da880c67526 586 Gene3D G3DSA:3.80.10.10 432 538 2.5E-6 T 11-10-2018 IPR032675 Leucine-rich repeat domain superfamily dqs_0607 884e13b7c307be7b1d351da880c67526 586 Pfam PF13306 Leucine rich repeats (6 copies) 271 355 5.2E-6 T 11-10-2018 IPR026906 Leucine rich repeat 5 dqs_0607 884e13b7c307be7b1d351da880c67526 586 Gene3D G3DSA:3.80.10.10 225 431 2.5E-23 T 11-10-2018 IPR032675 Leucine-rich repeat domain superfamily dqs_0607 884e13b7c307be7b1d351da880c67526 586 SUPERFAMILY SSF52058 230 532 1.02E-16 T 11-10-2018 dqs_2614 0e232f512b037f155899da27cd16f5a8 373 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 270 276 - T 11-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 dqs_2614 0e232f512b037f155899da27cd16f5a8 373 Gene3D G3DSA:3.20.20.70 1 371 5.4E-132 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2614 0e232f512b037f155899da27cd16f5a8 373 PIRSF PIRSF000138 1 372 2.0E-130 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 dqs_2614 0e232f512b037f155899da27cd16f5a8 373 Pfam PF01070 FMN-dependent dehydrogenase 10 368 2.2E-131 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 dqs_2614 0e232f512b037f155899da27cd16f5a8 373 SUPERFAMILY SSF51395 2 368 7.33E-99 T 11-10-2018 dqs_0136 23c70838752903cbd1caf64b09ec3802 102 Gene3D G3DSA:3.30.70.100 1 95 3.1E-34 T 11-10-2018 dqs_0136 23c70838752903cbd1caf64b09ec3802 102 SUPERFAMILY SSF54909 1 94 3.22E-30 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_0136 23c70838752903cbd1caf64b09ec3802 102 Pfam PF07045 Domain of unknown function (DUF1330) 2 94 7.8E-33 T 11-10-2018 IPR010753 Domain of unknown function DUF1330 dqs_0512 8db86fab6de7726995ba20c0e6d143bf 161 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 10 148 1.6E-34 T 11-10-2018 IPR002178 PTS EIIA type-2 domain dqs_0512 8db86fab6de7726995ba20c0e6d143bf 161 Gene3D G3DSA:3.40.930.10 1 151 1.1E-53 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 dqs_0512 8db86fab6de7726995ba20c0e6d143bf 161 SUPERFAMILY SSF55804 4 149 1.57E-43 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 dqs_0512 8db86fab6de7726995ba20c0e6d143bf 161 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 5 147 9.8E-45 T 11-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 dqs_0512 8db86fab6de7726995ba20c0e6d143bf 161 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain dqs_0504 dc6b75d66ebec161855164b17e5998a9 214 SUPERFAMILY SSF47616 78 197 1.22E-16 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_0504 dc6b75d66ebec161855164b17e5998a9 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 9 78 5.4E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_0504 dc6b75d66ebec161855164b17e5998a9 214 Gene3D G3DSA:3.40.30.10 3 196 6.6E-58 T 11-10-2018 dqs_0504 dc6b75d66ebec161855164b17e5998a9 214 SUPERFAMILY SSF52833 2 82 1.62E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0504 dc6b75d66ebec161855164b17e5998a9 214 Gene3D G3DSA:1.20.1050.10 80 190 6.6E-58 T 11-10-2018 dqs_0504 dc6b75d66ebec161855164b17e5998a9 214 Pfam PF13410 Glutathione S-transferase, C-terminal domain 138 196 1.4E-5 T 11-10-2018 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 241 542 7.4E-102 T 11-10-2018 IPR014146 DNA ligase D, ligase domain dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 Pfam PF13298 DNA polymerase Ligase (LigD) 55 160 1.4E-37 T 11-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 Gene3D G3DSA:3.90.920.30 599 881 8.7E-97 T 11-10-2018 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 Pfam PF04679 ATP dependent DNA ligase C terminal region 440 537 2.2E-23 T 11-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 592 836 1.0E-85 T 11-10-2018 IPR014145 DNA ligase D, polymerase domain dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 Pfam PF01068 ATP dependent DNA ligase domain 244 421 2.0E-21 T 11-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 Gene3D G3DSA:3.30.470.30 263 378 9.5E-46 T 11-10-2018 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 SUPERFAMILY SSF56091 239 421 8.87E-45 T 11-10-2018 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 Gene3D G3DSA:3.30.1490.70 251 419 9.5E-46 T 11-10-2018 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 250 865 3.1E-208 T 11-10-2018 IPR014143 DNA ligase D dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 SUPERFAMILY SSF56747 709 760 4.14E-5 T 11-10-2018 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 SUPERFAMILY SSF50249 424 546 3.14E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 Gene3D G3DSA:2.40.50.140 423 545 2.3E-36 T 11-10-2018 dqs_1891 befb0fa07a06996e85c80b9c734c17f9 881 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 22 180 7.9E-67 T 11-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain dqs_0427 bb207dee118fe43ec7b297315006bf8c 172 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 1 168 27.7 T 11-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 dqs_0427 bb207dee118fe43ec7b297315006bf8c 172 SUPERFAMILY SSF103088 57 165 4.84E-29 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_0427 bb207dee118fe43ec7b297315006bf8c 172 PRINTS PR01021 OMPA domain signature 113 129 4.5E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_0427 bb207dee118fe43ec7b297315006bf8c 172 PRINTS PR01021 OMPA domain signature 98 113 4.5E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_0427 bb207dee118fe43ec7b297315006bf8c 172 PRINTS PR01021 OMPA domain signature 68 90 4.5E-14 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_0427 bb207dee118fe43ec7b297315006bf8c 172 Gene3D G3DSA:3.30.1330.60 51 169 1.0E-33 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_0427 bb207dee118fe43ec7b297315006bf8c 172 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 66 168 1.3E-40 T 11-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 dqs_0427 bb207dee118fe43ec7b297315006bf8c 172 Pfam PF00691 OmpA family 67 162 3.7E-17 T 11-10-2018 IPR006665 OmpA-like domain dqs_3415 434edee549b4b4d33eb969b1c0204831 348 SUPERFAMILY SSF55729 11 118 8.25E-6 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3415 434edee549b4b4d33eb969b1c0204831 348 Pfam PF13480 Acetyltransferase (GNAT) domain 169 279 1.1E-15 T 11-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 dqs_3415 434edee549b4b4d33eb969b1c0204831 348 Gene3D G3DSA:3.40.630.30 139 293 6.1E-18 T 11-10-2018 dqs_3415 434edee549b4b4d33eb969b1c0204831 348 Gene3D G3DSA:3.40.630.30 17 138 6.1E-18 T 11-10-2018 dqs_3415 434edee549b4b4d33eb969b1c0204831 348 SUPERFAMILY SSF55729 155 316 7.53E-33 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3415 434edee549b4b4d33eb969b1c0204831 348 TIGRFAM TIGR03019 pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated 17 348 1.3E-156 T 11-10-2018 IPR017469 PEP-CTERM system-associated, FemAB-related dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 SMART SM00535 18 146 1.9E-48 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 SUPERFAMILY SSF69065 2 155 1.44E-45 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 Hamap MF_00104 Ribonuclease 3 [rnc]. 6 217 27.852 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 Gene3D G3DSA:3.30.160.20 151 222 1.1E-19 T 11-10-2018 dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 ProSitePatterns PS00517 Ribonuclease III family signature. 35 43 - T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 SUPERFAMILY SSF54768 106 220 3.61E-27 T 11-10-2018 dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 SMART SM00358 153 221 3.6E-20 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 Pfam PF00035 Double-stranded RNA binding motif 153 220 6.0E-14 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 Gene3D G3DSA:1.10.1520.10 1 144 8.9E-43 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 Pfam PF14622 Ribonuclease-III-like 17 136 7.8E-33 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 dqs_1767 39453aa9a247827a8d396fc7f40a62f1 223 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 6 220 7.4E-68 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 dqs_2744 b2209fde25a1c5d9b4e2b7b051435a60 118 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 1 105 2.9E-30 T 11-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV dqs_1766 1d4ed92672f8e2eff134426a622af265 119 Pfam PF16137 Domain of unknown function (DUF4845) 30 113 5.8E-24 T 11-10-2018 IPR032314 Protein of unknown function DUF4845 dqs_2694 05ec7494999265ef43b24cfe308383a5 284 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 277 3.8E-90 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 dqs_2694 05ec7494999265ef43b24cfe308383a5 284 SUPERFAMILY SSF53213 2 283 1.7E-93 T 11-10-2018 dqs_2694 05ec7494999265ef43b24cfe308383a5 284 Gene3D G3DSA:3.40.830.10 1 284 8.9E-95 T 11-10-2018 dqs_2771 ee78dc35f08f24ca4652490ee06f6a8b 709 Gene3D G3DSA:2.170.130.10 38 161 3.6E-38 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_2771 ee78dc35f08f24ca4652490ee06f6a8b 709 Pfam PF00593 TonB dependent receptor 226 708 1.6E-58 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_2771 ee78dc35f08f24ca4652490ee06f6a8b 709 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 152 4.9E-22 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_2771 ee78dc35f08f24ca4652490ee06f6a8b 709 Gene3D G3DSA:2.40.170.20 162 709 3.2E-124 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2771 ee78dc35f08f24ca4652490ee06f6a8b 709 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 58 709 2.7E-104 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 dqs_2771 ee78dc35f08f24ca4652490ee06f6a8b 709 SUPERFAMILY SSF56935 25 709 9.34E-137 T 11-10-2018 dqs_2771 ee78dc35f08f24ca4652490ee06f6a8b 709 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 692 709 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site dqs_2634 80378863794b90034d055f43749fb666 167 Pfam PF04982 HPP family 48 163 2.1E-36 T 11-10-2018 IPR007065 HPP dqs_2696 5640daf6f5cfe05934f58d5b64223737 304 SUPERFAMILY SSF51556 23 299 6.8E-76 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_2696 5640daf6f5cfe05934f58d5b64223737 304 Pfam PF04909 Amidohydrolase 28 299 5.4E-50 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 dqs_2696 5640daf6f5cfe05934f58d5b64223737 304 Gene3D G3DSA:3.20.20.140 9 303 9.1E-83 T 11-10-2018 dqs_0041 84d5149453a809d81db90a7da3d1a054 411 Gene3D G3DSA:1.20.1250.20 218 397 1.7E-6 T 11-10-2018 dqs_0041 84d5149453a809d81db90a7da3d1a054 411 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 28 388 2.7E-64 T 11-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB dqs_0041 84d5149453a809d81db90a7da3d1a054 411 SUPERFAMILY SSF103473 5 392 5.75E-35 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_0041 84d5149453a809d81db90a7da3d1a054 411 Gene3D G3DSA:1.20.1250.20 14 200 1.7E-14 T 11-10-2018 dqs_3736 e86e720bf96e171c85592847710e8bc4 379 Gene3D G3DSA:3.50.50.60 3 350 2.4E-17 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3736 e86e720bf96e171c85592847710e8bc4 379 Gene3D G3DSA:3.30.9.10 86 323 2.4E-17 T 11-10-2018 dqs_3736 e86e720bf96e171c85592847710e8bc4 379 SUPERFAMILY SSF51905 1 350 2.5E-21 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3736 e86e720bf96e171c85592847710e8bc4 379 Pfam PF01266 FAD dependent oxidoreductase 3 307 4.6E-14 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_0924 d9f1927e5adee2cbd4beac406c6c7182 265 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 261 4.9E-86 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 dqs_0924 d9f1927e5adee2cbd4beac406c6c7182 265 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 265 45.008 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 dqs_0924 d9f1927e5adee2cbd4beac406c6c7182 265 Gene3D G3DSA:3.60.21.10 1 265 1.9E-75 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like dqs_0924 d9f1927e5adee2cbd4beac406c6c7182 265 PIRSF PIRSF000903 1 265 1.1E-108 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 dqs_0924 d9f1927e5adee2cbd4beac406c6c7182 265 Pfam PF00149 Calcineurin-like phosphoesterase 4 120 7.9E-11 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 dqs_0924 d9f1927e5adee2cbd4beac406c6c7182 265 SUPERFAMILY SSF56300 1 256 4.92E-54 T 11-10-2018 dqs_0930 27e10980e94a814e79e64904e47e2cac 130 Pfam PF01219 Prokaryotic diacylglycerol kinase 27 128 9.6E-34 T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 dqs_0930 27e10980e94a814e79e64904e47e2cac 130 Gene3D G3DSA:1.10.3830.10 14 130 2.5E-38 T 11-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 dqs_0930 27e10980e94a814e79e64904e47e2cac 130 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 81 92 - T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 dqs_0298 9e9861e301a68fd45f6c8707cfa892b2 90 Pfam PF00550 Phosphopantetheine attachment site 38 64 2.5E-4 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain dqs_0298 9e9861e301a68fd45f6c8707cfa892b2 90 Gene3D G3DSA:1.10.1200.10 4 88 1.0E-13 T 11-10-2018 IPR036736 ACP-like superfamily dqs_0298 9e9861e301a68fd45f6c8707cfa892b2 90 SUPERFAMILY SSF47336 6 83 9.68E-10 T 11-10-2018 IPR036736 ACP-like superfamily dqs_4039 15f5a30c289c1b027ba1316c6a75a76f 169 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 10 160 2.2E-60 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 dqs_4039 15f5a30c289c1b027ba1316c6a75a76f 169 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 161 3.1E-58 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 dqs_4039 15f5a30c289c1b027ba1316c6a75a76f 169 PIRSF PIRSF028301 1 169 5.9E-62 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 dqs_3979 368321dfbc2363d0d5f843b94cdbfc57 550 Gene3D G3DSA:1.10.3720.10 11 274 2.6E-58 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3979 368321dfbc2363d0d5f843b94cdbfc57 550 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 270 1.1E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_3979 368321dfbc2363d0d5f843b94cdbfc57 550 SUPERFAMILY SSF161098 10 270 3.36E-55 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3979 368321dfbc2363d0d5f843b94cdbfc57 550 Gene3D G3DSA:1.10.3720.10 294 545 1.8E-20 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3979 368321dfbc2363d0d5f843b94cdbfc57 550 SUPERFAMILY SSF161098 300 539 4.84E-23 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0518 d2b7fe073b43d7cf8bf698d81ce06b3c 161 Pfam PF02464 Competence-damaged protein 7 157 1.2E-53 T 11-10-2018 IPR008136 CinA, C-terminal dqs_0518 d2b7fe073b43d7cf8bf698d81ce06b3c 161 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 12 156 2.0E-44 T 11-10-2018 IPR008136 CinA, C-terminal dqs_0518 d2b7fe073b43d7cf8bf698d81ce06b3c 161 Gene3D G3DSA:3.90.950.20 1 160 1.1E-53 T 11-10-2018 IPR036653 CinA-like, C-terminal dqs_0518 d2b7fe073b43d7cf8bf698d81ce06b3c 161 SUPERFAMILY SSF142433 3 156 1.83E-51 T 11-10-2018 IPR036653 CinA-like, C-terminal dqs_2978 59939d14473a6322a87888930dca048e 394 Gene3D G3DSA:3.40.50.1260 8 388 3.8E-146 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 Gene3D G3DSA:3.40.50.1260 167 380 3.8E-146 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PIRSF PIRSF000724 1 394 3.5E-137 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 Pfam PF00162 Phosphoglycerate kinase 7 380 7.8E-139 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 11-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 SUPERFAMILY SSF53748 3 389 1.13E-140 T 11-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 188 207 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 32 54 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 310 335 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 343 354 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 134 156 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 165 187 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 366 383 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 PRINTS PR00477 Phosphoglycerate kinase family signature 106 121 9.8E-83 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_2978 59939d14473a6322a87888930dca048e 394 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 390 38.622 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 dqs_1562 6ec02b8f51937d3df19b499d7167f27c 335 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 1 330 23.447 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 dqs_1562 6ec02b8f51937d3df19b499d7167f27c 335 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 4 329 4.3E-109 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 dqs_1562 6ec02b8f51937d3df19b499d7167f27c 335 Pfam PF03116 NQR2, RnfD, RnfE family 3 328 2.8E-92 T 11-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 dqs_2786 4de0fb31ac6fb1792dc2611b1076dd3c 1339 Pfam PF02514 CobN/Magnesium Chelatase 136 1221 8.0E-267 T 11-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 dqs_3959 270a13f3e57f1c0287fdeb3b6118f849 331 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 11 176 6.5E-29 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3959 270a13f3e57f1c0287fdeb3b6118f849 331 Gene3D G3DSA:3.40.50.700 1 195 2.2E-49 T 11-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily dqs_3959 270a13f3e57f1c0287fdeb3b6118f849 331 SUPERFAMILY SSF56770 1 275 7.72E-76 T 11-10-2018 dqs_3959 270a13f3e57f1c0287fdeb3b6118f849 331 PIRSF PIRSF000310 1 323 1.4E-85 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 dqs_3959 270a13f3e57f1c0287fdeb3b6118f849 331 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 198 273 6.6E-22 T 11-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal dqs_3959 270a13f3e57f1c0287fdeb3b6118f849 331 Gene3D G3DSA:4.10.480.10 196 276 6.3E-18 T 11-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily dqs_2518 e4d5320ab9138c535336598234a0b3a8 329 PIRSF PIRSF017082 1 329 1.6E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 dqs_2518 e4d5320ab9138c535336598234a0b3a8 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 325 1.2E-89 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 dqs_2518 e4d5320ab9138c535336598234a0b3a8 329 Gene3D G3DSA:3.40.190.150 33 319 1.1E-113 T 11-10-2018 dqs_2518 e4d5320ab9138c535336598234a0b3a8 329 SUPERFAMILY SSF53850 116 288 1.13E-11 T 11-10-2018 dqs_2518 e4d5320ab9138c535336598234a0b3a8 329 Gene3D G3DSA:3.40.190.10 131 254 1.1E-113 T 11-10-2018 dqs_3098 160cbe8240da63f100cb5c14932efe6c 455 PIRSF PIRSF004810 5 455 1.5E-131 T 11-10-2018 IPR014047 Chromate transporter, long chain dqs_3098 160cbe8240da63f100cb5c14932efe6c 455 Pfam PF02417 Chromate transporter 264 448 4.8E-32 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 dqs_3098 160cbe8240da63f100cb5c14932efe6c 455 Pfam PF02417 Chromate transporter 24 188 1.2E-35 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 dqs_3098 160cbe8240da63f100cb5c14932efe6c 455 TIGRFAM TIGR00937 2A51: chromate efflux transporter 31 448 3.8E-71 T 11-10-2018 IPR014047 Chromate transporter, long chain dqs_0309 8e17cc55f9561eb35b9181e9cf8bc44a 326 Gene3D G3DSA:3.60.15.10 30 326 1.8E-108 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0309 8e17cc55f9561eb35b9181e9cf8bc44a 326 SUPERFAMILY SSF56281 31 311 3.14E-57 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0309 8e17cc55f9561eb35b9181e9cf8bc44a 326 Pfam PF00753 Metallo-beta-lactamase superfamily 90 288 5.7E-25 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_0309 8e17cc55f9561eb35b9181e9cf8bc44a 326 SMART SM00849 91 297 1.2E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_0527 4a5ca2f4a98e6cfbf371bd9e6325d756 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 7 190 2.8E-63 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 dqs_0527 4a5ca2f4a98e6cfbf371bd9e6325d756 193 PIRSF PIRSF006102 1 193 1.6E-62 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 dqs_0527 4a5ca2f4a98e6cfbf371bd9e6325d756 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 190 1.6E-85 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 dqs_0527 4a5ca2f4a98e6cfbf371bd9e6325d756 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.223 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 dqs_3476 8d010e64c924f95f67b70e3e12582490 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 153 181 1.2E-46 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 dqs_3476 8d010e64c924f95f67b70e3e12582490 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 102 128 1.2E-46 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 dqs_3476 8d010e64c924f95f67b70e3e12582490 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 84 102 1.2E-46 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 dqs_3476 8d010e64c924f95f67b70e3e12582490 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 7 34 1.2E-46 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 dqs_3476 8d010e64c924f95f67b70e3e12582490 255 Pfam PF00902 Sec-independent protein translocase protein (TatC) 11 220 3.0E-66 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 dqs_3476 8d010e64c924f95f67b70e3e12582490 255 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 4 237 16.393 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 dqs_3476 8d010e64c924f95f67b70e3e12582490 255 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 225 3.0E-69 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 Gene3D G3DSA:2.130.10.10 227 350 4.5E-11 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 Pfam PF00400 WD domain, G-beta repeat 194 216 0.2 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 SUPERFAMILY SSF63829 143 346 8.5E-31 T 11-10-2018 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 Gene3D G3DSA:2.130.10.10 18 226 1.7E-19 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 SUPERFAMILY SSF50969 22 183 7.85E-10 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 SMART SM00320 179 217 5.5 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 SMART SM00320 262 303 20.0 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 SMART SM00320 140 177 4.2 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 SMART SM00320 306 345 390.0 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 SMART SM00320 59 97 13.0 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 dqs_1326 e5ab4baccd8b55f0ef5cb2f2fe3cf644 357 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 281 344 1.3E-5 T 11-10-2018 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain dqs_1700 670a2494cac24ff31917b23af94a939b 145 SUPERFAMILY SSF55961 1 142 6.22E-30 T 11-10-2018 dqs_1700 670a2494cac24ff31917b23af94a939b 145 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 134 1.9E-27 T 11-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 dqs_1700 670a2494cac24ff31917b23af94a939b 145 Gene3D G3DSA:3.30.530.20 3 143 1.2E-32 T 11-10-2018 IPR023393 START-like domain superfamily dqs_0217 8fd92307d79bbef9cd3980a1b0f84a89 361 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 7 184 1.3E-26 T 11-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase dqs_1331 0f9a85638d8290bec21aad657ffc43ea 265 Gene3D G3DSA:3.40.50.300 9 252 9.4E-61 T 11-10-2018 dqs_1331 0f9a85638d8290bec21aad657ffc43ea 265 Pfam PF00005 ABC transporter 37 183 5.6E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1331 0f9a85638d8290bec21aad657ffc43ea 265 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1331 0f9a85638d8290bec21aad657ffc43ea 265 SMART SM00382 46 238 6.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1331 0f9a85638d8290bec21aad657ffc43ea 265 SUPERFAMILY SSF52540 22 242 5.81E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1452 b63bd0f0f37fec77d901d96403769134 344 SMART SM00062 39 269 1.7E-38 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_1452 b63bd0f0f37fec77d901d96403769134 344 SUPERFAMILY SSF53850 30 263 4.76E-48 T 11-10-2018 dqs_1452 b63bd0f0f37fec77d901d96403769134 344 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 259 2.2E-30 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_1452 b63bd0f0f37fec77d901d96403769134 344 Gene3D G3DSA:3.40.190.10 29 259 1.9E-54 T 11-10-2018 dqs_1452 b63bd0f0f37fec77d901d96403769134 344 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 62 75 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site dqs_1452 b63bd0f0f37fec77d901d96403769134 344 Gene3D G3DSA:3.40.190.10 131 227 1.9E-54 T 11-10-2018 dqs_0083 ab650542465b295a8e55a8801823a2dd 403 Pfam PF07690 Major Facilitator Superfamily 22 239 1.4E-20 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_0083 ab650542465b295a8e55a8801823a2dd 403 SUPERFAMILY SSF103473 7 392 1.01E-49 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_0083 ab650542465b295a8e55a8801823a2dd 403 Gene3D G3DSA:1.20.1250.20 4 393 1.8E-39 T 11-10-2018 dqs_0037 ffb3c58c816406dc411fed89bdf1461c 295 SUPERFAMILY SSF53448 4 186 1.59E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0037 ffb3c58c816406dc411fed89bdf1461c 295 Gene3D G3DSA:3.90.550.10 1 181 4.3E-31 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0037 ffb3c58c816406dc411fed89bdf1461c 295 Pfam PF02709 N-terminal domain of galactosyltransferase 110 164 1.5E-13 T 11-10-2018 IPR027791 Galactosyltransferase, C-terminal Reactome: R-HSA-2022854|Reactome: R-HSA-975577 dqs_0037 ffb3c58c816406dc411fed89bdf1461c 295 Pfam PF00535 Glycosyl transferase family 2 7 101 1.4E-12 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_3742 b19f7062b01d3d24096b142eb7c4e82b 331 SUPERFAMILY SSF51735 13 319 2.1E-73 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3742 b19f7062b01d3d24096b142eb7c4e82b 331 Gene3D G3DSA:3.90.25.10 181 314 3.5E-91 T 11-10-2018 dqs_3742 b19f7062b01d3d24096b142eb7c4e82b 331 Pfam PF01370 NAD dependent epimerase/dehydratase family 20 250 2.5E-66 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 dqs_3742 b19f7062b01d3d24096b142eb7c4e82b 331 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 17 318 44.376 T 11-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 dqs_3742 b19f7062b01d3d24096b142eb7c4e82b 331 Gene3D G3DSA:3.40.50.720 20 307 3.5E-91 T 11-10-2018 dqs_1859 e555e34f06446d77866497b26546d1a5 248 SMART SM00448 10 121 1.0E-42 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1859 e555e34f06446d77866497b26546d1a5 248 SMART SM00862 161 237 9.5E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_1859 e555e34f06446d77866497b26546d1a5 248 Pfam PF00072 Response regulator receiver domain 12 122 5.0E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1859 e555e34f06446d77866497b26546d1a5 248 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 237 2.0E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_1859 e555e34f06446d77866497b26546d1a5 248 SUPERFAMILY SSF52172 5 130 5.83E-42 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1859 e555e34f06446d77866497b26546d1a5 248 Gene3D G3DSA:3.40.50.2300 1 130 1.5E-39 T 11-10-2018 dqs_1859 e555e34f06446d77866497b26546d1a5 248 SUPERFAMILY SSF46894 138 239 1.67E-28 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_1859 e555e34f06446d77866497b26546d1a5 248 Gene3D G3DSA:1.10.10.10 135 243 3.0E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3764 95f246138addd9874984b7aac078c594 190 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 3 183 5.4E-78 T 11-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 dqs_3764 95f246138addd9874984b7aac078c594 190 Pfam PF03352 Methyladenine glycosylase 7 182 5.4E-75 T 11-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 dqs_3764 95f246138addd9874984b7aac078c594 190 SUPERFAMILY SSF48150 3 184 7.06E-75 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 dqs_3764 95f246138addd9874984b7aac078c594 190 Gene3D G3DSA:1.10.340.30 2 186 5.4E-79 T 11-10-2018 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 SUPERFAMILY SSF58104 233 542 6.54E-72 T 11-10-2018 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 SMART SM00304 213 265 1.0E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 185 1.2E-23 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 Pfam PF00672 HAMP domain 219 261 2.3E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 SMART SM00283 280 541 2.6E-72 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 7.3E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 189 209 7.3E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 405 7.3E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 Gene3D G3DSA:1.10.287.950 215 542 1.8E-74 T 11-10-2018 dqs_2304 9104d2d80dfde9a8e015939d413a7585 542 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 507 1.5E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 SUPERFAMILY SSF51905 25 398 1.91E-62 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 Pfam PF01494 FAD binding domain 26 364 4.0E-63 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 Gene3D G3DSA:3.40.30.120 406 554 2.6E-12 T 11-10-2018 dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 Gene3D G3DSA:3.50.50.60 28 360 4.3E-88 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 Gene3D G3DSA:3.30.70.2450 204 289 4.3E-88 T 11-10-2018 dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 175 190 2.8E-32 T 11-10-2018 dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 27 49 2.8E-32 T 11-10-2018 dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 315 2.8E-32 T 11-10-2018 dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 333 351 2.8E-32 T 11-10-2018 dqs_3826 f3ad1234fd6b50789cfd9e282c5d82f8 555 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 315 331 2.8E-32 T 11-10-2018 dqs_0822 ed415ef5565996fdbe0cbdbcfe1aca46 306 Pfam PF04794 YdjC-like protein 10 275 1.6E-47 T 11-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like dqs_0822 ed415ef5565996fdbe0cbdbcfe1aca46 306 SUPERFAMILY SSF88713 9 287 4.11E-62 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 dqs_0822 ed415ef5565996fdbe0cbdbcfe1aca46 306 Gene3D G3DSA:3.20.20.370 9 289 3.6E-39 T 11-10-2018 dqs_1443 973c8adba4deec79ca9565b58ab10c00 379 SUPERFAMILY SSF52467 110 311 4.25E-5 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_1443 973c8adba4deec79ca9565b58ab10c00 379 Pfam PF13289 SIR2-like domain 116 336 2.8E-10 T 11-10-2018 IPR039444 SIR2-like domain dqs_1675 9f26cc89fe90d72a834489811d64f7fa 236 Gene3D G3DSA:3.10.20.30 1 105 3.6E-36 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_1675 9f26cc89fe90d72a834489811d64f7fa 236 SUPERFAMILY SSF54292 2 105 7.56E-28 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_1675 9f26cc89fe90d72a834489811d64f7fa 236 Pfam PF13534 4Fe-4S dicluster domain 146 219 3.8E-10 T 11-10-2018 dqs_1675 9f26cc89fe90d72a834489811d64f7fa 236 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 8 110 5.1E-32 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_1675 9f26cc89fe90d72a834489811d64f7fa 236 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_1675 9f26cc89fe90d72a834489811d64f7fa 236 Gene3D G3DSA:1.10.1060.10 106 236 9.9E-57 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_1675 9f26cc89fe90d72a834489811d64f7fa 236 SUPERFAMILY SSF46548 106 234 9.24E-38 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_1675 9f26cc89fe90d72a834489811d64f7fa 236 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 10 228 5.4E-85 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 dqs_2126 03461000a669e3bac4b88d6d380bee94 368 Pfam PF00107 Zinc-binding dehydrogenase 196 326 3.5E-12 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 dqs_2126 03461000a669e3bac4b88d6d380bee94 368 SUPERFAMILY SSF51735 162 333 2.31E-27 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2126 03461000a669e3bac4b88d6d380bee94 368 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 152 1.9E-18 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 dqs_2126 03461000a669e3bac4b88d6d380bee94 368 SMART SM00829 13 358 3.9E-7 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 dqs_2126 03461000a669e3bac4b88d6d380bee94 368 SUPERFAMILY SSF50129 2 191 4.72E-46 T 11-10-2018 IPR011032 GroES-like superfamily dqs_2126 03461000a669e3bac4b88d6d380bee94 368 Gene3D G3DSA:3.90.180.10 3 360 8.9E-78 T 11-10-2018 dqs_2429 76d5b9e306eb7129b08a0d0fbc0ca9b8 117 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 17 110 20.8 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 dqs_2429 76d5b9e306eb7129b08a0d0fbc0ca9b8 117 Gene3D G3DSA:3.30.1360.20 19 115 9.6E-30 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 dqs_2429 76d5b9e306eb7129b08a0d0fbc0ca9b8 117 SUPERFAMILY SSF55248 17 110 1.15E-29 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 dqs_2429 76d5b9e306eb7129b08a0d0fbc0ca9b8 117 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 19 109 1.1E-26 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 dqs_3299 e0d0f99ebf389228d8968646a206c942 103 SUPERFAMILY SSF141091 1 102 7.98E-40 T 11-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3299 e0d0f99ebf389228d8968646a206c942 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 11-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3299 e0d0f99ebf389228d8968646a206c942 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.728 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3299 e0d0f99ebf389228d8968646a206c942 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 3.6E-38 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3299 e0d0f99ebf389228d8968646a206c942 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 4.7E-42 T 11-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1154 b3ed59808402b0087bb7df2222215ea5 207 SUPERFAMILY SSF51366 4 202 7.69E-62 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 dqs_1154 b3ed59808402b0087bb7df2222215ea5 207 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 6 199 1.5E-44 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 dqs_1154 b3ed59808402b0087bb7df2222215ea5 207 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 4 205 41.819 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 dqs_1154 b3ed59808402b0087bb7df2222215ea5 207 Gene3D G3DSA:3.20.20.70 2 206 1.3E-66 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0760 929e1d7e231c1fab6dcda816cffcdab7 627 Pfam PF07695 7TM diverse intracellular signalling 198 398 1.0E-45 T 11-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 dqs_0760 929e1d7e231c1fab6dcda816cffcdab7 627 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 449 610 8.5E-47 T 11-10-2018 IPR000160 GGDEF domain dqs_0760 929e1d7e231c1fab6dcda816cffcdab7 627 Gene3D G3DSA:3.30.70.270 448 617 1.7E-57 T 11-10-2018 dqs_0760 929e1d7e231c1fab6dcda816cffcdab7 627 SUPERFAMILY SSF55073 458 613 8.63E-49 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0760 929e1d7e231c1fab6dcda816cffcdab7 627 Pfam PF00990 Diguanylate cyclase, GGDEF domain 453 608 1.3E-48 T 11-10-2018 IPR000160 GGDEF domain dqs_0760 929e1d7e231c1fab6dcda816cffcdab7 627 SMART SM00267 442 614 2.5E-56 T 11-10-2018 IPR000160 GGDEF domain dqs_0760 929e1d7e231c1fab6dcda816cffcdab7 627 Pfam PF07696 7TMR-DISM extracellular 2 46 183 8.4E-31 T 11-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 dqs_0760 929e1d7e231c1fab6dcda816cffcdab7 627 Gene3D G3DSA:2.60.40.2380 42 188 3.7E-19 T 11-10-2018 dqs_3856 8fce0f788d2fc680fbb0d8a64f35f7b3 157 Pfam PF00583 Acetyltransferase (GNAT) family 29 108 3.2E-11 T 11-10-2018 IPR000182 GNAT domain dqs_3856 8fce0f788d2fc680fbb0d8a64f35f7b3 157 Gene3D G3DSA:3.40.630.30 4 129 1.2E-23 T 11-10-2018 dqs_3856 8fce0f788d2fc680fbb0d8a64f35f7b3 157 SUPERFAMILY SSF55729 30 114 2.16E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_2923 00b5932a2847eb26a8fd572f3f9d7712 361 SUPERFAMILY SSF51569 11 352 9.77E-138 T 11-10-2018 dqs_2923 00b5932a2847eb26a8fd572f3f9d7712 361 Gene3D G3DSA:3.20.20.70 5 354 6.8E-164 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2923 00b5932a2847eb26a8fd572f3f9d7712 361 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 10 353 8.2E-166 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 dqs_2923 00b5932a2847eb26a8fd572f3f9d7712 361 Pfam PF00793 DAHP synthetase I family 42 339 3.1E-106 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 dqs_2923 00b5932a2847eb26a8fd572f3f9d7712 361 PIRSF PIRSF001361 1 356 2.3E-161 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 dqs_1395 006567934f9038a69801b4bc634df819 258 SUPERFAMILY SSF52343 102 256 1.01E-42 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_1395 006567934f9038a69801b4bc634df819 258 SUPERFAMILY SSF63380 5 99 2.51E-26 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_1395 006567934f9038a69801b4bc634df819 258 Gene3D G3DSA:2.40.30.10 1 97 1.0E-29 T 11-10-2018 dqs_1395 006567934f9038a69801b4bc634df819 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 7.5E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1395 006567934f9038a69801b4bc634df819 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 7.5E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1395 006567934f9038a69801b4bc634df819 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 7.5E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1395 006567934f9038a69801b4bc634df819 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 145 7.5E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_1395 006567934f9038a69801b4bc634df819 258 Gene3D G3DSA:3.40.50.80 100 254 2.2E-42 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_1395 006567934f9038a69801b4bc634df819 258 Pfam PF00175 Oxidoreductase NAD-binding domain 112 229 1.1E-8 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_1395 006567934f9038a69801b4bc634df819 258 Pfam PF00970 Oxidoreductase FAD-binding domain 15 98 5.6E-8 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_3267 2291c23f2c2f8eaa8be0b2d7a847fd01 365 Gene3D G3DSA:2.40.420.20 56 351 7.4E-77 T 11-10-2018 dqs_3267 2291c23f2c2f8eaa8be0b2d7a847fd01 365 Gene3D G3DSA:1.10.287.470 105 163 7.4E-77 T 11-10-2018 dqs_3267 2291c23f2c2f8eaa8be0b2d7a847fd01 365 Gene3D G3DSA:2.40.50.100 71 203 7.4E-77 T 11-10-2018 dqs_3267 2291c23f2c2f8eaa8be0b2d7a847fd01 365 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 272 7.5E-35 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_3267 2291c23f2c2f8eaa8be0b2d7a847fd01 365 Gene3D G3DSA:2.40.30.170 58 279 7.4E-77 T 11-10-2018 dqs_3267 2291c23f2c2f8eaa8be0b2d7a847fd01 365 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 353 7.5E-81 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_3267 2291c23f2c2f8eaa8be0b2d7a847fd01 365 SUPERFAMILY SSF111369 62 276 5.36E-44 T 11-10-2018 dqs_0340 b30013c5f215fc918d54d883a255e058 197 SUPERFAMILY SSF48498 81 185 3.86E-27 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily dqs_0340 b30013c5f215fc918d54d883a255e058 197 Gene3D G3DSA:1.10.10.60 5 51 2.5E-18 T 11-10-2018 dqs_0340 b30013c5f215fc918d54d883a255e058 197 Gene3D G3DSA:1.10.357.10 53 186 1.1E-37 T 11-10-2018 dqs_0340 b30013c5f215fc918d54d883a255e058 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 61 2.2E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0340 b30013c5f215fc918d54d883a255e058 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.0E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0340 b30013c5f215fc918d54d883a255e058 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.0E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 dqs_0340 b30013c5f215fc918d54d883a255e058 197 SUPERFAMILY SSF46689 1 74 9.23E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1847 7292fcb3e11e0c14c28495dbc391031a 273 SUPERFAMILY SSF51556 16 263 8.76E-77 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_1847 7292fcb3e11e0c14c28495dbc391031a 273 Pfam PF01026 TatD related DNase 17 263 2.6E-63 T 11-10-2018 IPR001130 TatD family GO:0016788 dqs_1847 7292fcb3e11e0c14c28495dbc391031a 273 PIRSF PIRSF005902 9 266 7.7E-66 T 11-10-2018 IPR001130 TatD family GO:0016788 dqs_1847 7292fcb3e11e0c14c28495dbc391031a 273 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 138 148 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 dqs_1847 7292fcb3e11e0c14c28495dbc391031a 273 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 201 217 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 dqs_1847 7292fcb3e11e0c14c28495dbc391031a 273 Gene3D G3DSA:3.20.20.140 14 264 3.3E-74 T 11-10-2018 dqs_0441 a1e4e3a4098b2e0c320951c6a0d97403 256 SUPERFAMILY SSF52402 31 214 4.61E-45 T 11-10-2018 dqs_0441 a1e4e3a4098b2e0c320951c6a0d97403 256 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 53 227 2.4E-40 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 dqs_0441 a1e4e3a4098b2e0c320951c6a0d97403 256 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 58 251 8.2E-75 T 11-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 dqs_0441 a1e4e3a4098b2e0c320951c6a0d97403 256 PIRSF PIRSF000857 9 256 5.4E-78 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 dqs_0441 a1e4e3a4098b2e0c320951c6a0d97403 256 Gene3D G3DSA:3.40.50.620 16 256 3.5E-64 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_0971 d97b3eec3846437693bd6bb2f183b467 127 SUPERFAMILY SSF110069 6 127 1.44E-49 T 11-10-2018 IPR036767 ApaG domain superfamily dqs_0971 d97b3eec3846437693bd6bb2f183b467 127 Pfam PF04379 ApaG domain 20 104 2.4E-36 T 11-10-2018 IPR007474 ApaG domain dqs_0971 d97b3eec3846437693bd6bb2f183b467 127 Gene3D G3DSA:2.60.40.1470 1 127 1.7E-49 T 11-10-2018 IPR036767 ApaG domain superfamily dqs_0971 d97b3eec3846437693bd6bb2f183b467 127 Hamap MF_00791 Protein ApaG [apaG]. 2 127 33.57 T 11-10-2018 IPR023065 Uncharacterised protein family ApaG dqs_0932 080f691ef3c87e69ad67786c64e8204c 294 Gene3D G3DSA:3.40.50.150 105 294 8.6E-58 T 11-10-2018 dqs_0932 080f691ef3c87e69ad67786c64e8204c 294 SUPERFAMILY SSF53335 76 272 1.51E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0932 080f691ef3c87e69ad67786c64e8204c 294 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 293 7.8E-89 T 11-10-2018 dqs_0932 080f691ef3c87e69ad67786c64e8204c 294 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 2 276 1.3E-72 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 dqs_0932 080f691ef3c87e69ad67786c64e8204c 294 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 2 294 31.01 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 dqs_0932 080f691ef3c87e69ad67786c64e8204c 294 PIRSF PIRSF000401 1 294 3.6E-88 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 dqs_3250 b20a22138422924e3d8df44609793ce5 151 PIRSF PIRSF006113 1 82 7.6E-17 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 dqs_3250 b20a22138422924e3d8df44609793ce5 151 PIRSF PIRSF006113 93 147 7.7 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 dqs_3250 b20a22138422924e3d8df44609793ce5 151 Gene3D G3DSA:3.30.479.10 1 90 8.0E-24 T 11-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 dqs_3250 b20a22138422924e3d8df44609793ce5 151 Gene3D G3DSA:3.30.479.10 91 149 2.4E-10 T 11-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 dqs_3250 b20a22138422924e3d8df44609793ce5 151 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 3 115 1.0E-27 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 dqs_3250 b20a22138422924e3d8df44609793ce5 151 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 2 143 3.9E-35 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 dqs_3250 b20a22138422924e3d8df44609793ce5 151 SUPERFAMILY SSF55620 1 146 1.17E-38 T 11-10-2018 dqs_1240 ad4f9a1cc31267d4cb69f3edb2677c01 395 SUPERFAMILY SSF53822 27 391 3.64E-83 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_1240 ad4f9a1cc31267d4cb69f3edb2677c01 395 Pfam PF13458 Periplasmic binding protein 27 359 7.7E-69 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_1240 ad4f9a1cc31267d4cb69f3edb2677c01 395 Gene3D G3DSA:3.40.50.2300 29 354 4.3E-91 T 11-10-2018 dqs_1240 ad4f9a1cc31267d4cb69f3edb2677c01 395 Gene3D G3DSA:3.40.50.2300 145 360 4.3E-91 T 11-10-2018 dqs_2293 5ddd672677b3628242ed23fbca6118a1 304 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 4 275 6.0E-18 T 11-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD dqs_3639 8dd51f43985fc834327245574b9c587c 339 Gene3D G3DSA:3.40.50.80 200 336 3.7E-34 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_3639 8dd51f43985fc834327245574b9c587c 339 Gene3D G3DSA:2.40.30.10 102 199 2.4E-26 T 11-10-2018 dqs_3639 8dd51f43985fc834327245574b9c587c 339 SUPERFAMILY SSF54292 1 89 9.7E-25 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_3639 8dd51f43985fc834327245574b9c587c 339 SUPERFAMILY SSF52343 201 335 2.62E-39 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_3639 8dd51f43985fc834327245574b9c587c 339 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_3639 8dd51f43985fc834327245574b9c587c 339 Pfam PF00970 Oxidoreductase FAD-binding domain 105 197 5.7E-14 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 233 242 3.3E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 300 308 3.3E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 148 155 3.3E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 192 201 3.3E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 208 227 3.3E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 144 3.3E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 80 2.0E-12 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_3639 8dd51f43985fc834327245574b9c587c 339 SUPERFAMILY SSF63380 102 199 8.42E-26 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_3639 8dd51f43985fc834327245574b9c587c 339 Pfam PF00175 Oxidoreductase NAD-binding domain 209 314 2.0E-21 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 Gene3D G3DSA:3.10.20.30 1 95 3.8E-23 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 148 155 1.5E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 208 227 1.5E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 132 142 1.5E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 233 242 1.5E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_3639 8dd51f43985fc834327245574b9c587c 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 300 308 1.5E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 Gene3D G3DSA:3.40.449.10 24 248 1.3E-267 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 Gene3D G3DSA:2.170.8.10 60 409 1.3E-267 T 11-10-2018 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 273 281 - T 11-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 PIRSF PIRSF001348 1 613 1.8E-285 T 11-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 13 613 51.625 T 11-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 249 606 8.0E-171 T 11-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 SUPERFAMILY SSF53795 249 609 2.52E-157 T 11-10-2018 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 24 245 2.2E-106 T 11-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 SUPERFAMILY SSF68923 12 248 1.2E-105 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 dqs_0890 193eb4f20009cafdd8078d607f7000b5 614 Gene3D G3DSA:3.90.228.20 249 603 1.3E-267 T 11-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 dqs_3726 e68b19d2a44a40b60f7c72ba7592dbf6 251 Pfam PF01370 NAD dependent epimerase/dehydratase family 1 157 6.3E-22 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 dqs_3726 e68b19d2a44a40b60f7c72ba7592dbf6 251 Gene3D G3DSA:3.40.50.720 1 248 8.2E-52 T 11-10-2018 dqs_3726 e68b19d2a44a40b60f7c72ba7592dbf6 251 SUPERFAMILY SSF51735 1 247 1.65E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2829 8a6ca8b1c85cf3a3760396f7ff005d84 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 22 371 6.2E-103 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase dqs_2829 8a6ca8b1c85cf3a3760396f7ff005d84 376 Gene3D G3DSA:3.40.640.10 10 375 1.1E-108 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2829 8a6ca8b1c85cf3a3760396f7ff005d84 376 PIRSF PIRSF000390 8 376 3.5E-107 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase dqs_2829 8a6ca8b1c85cf3a3760396f7ff005d84 376 SUPERFAMILY SSF53383 10 373 1.15E-99 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1394 51401ef8ce727332046234166c1c3270 349 Gene3D G3DSA:1.10.760.10 65 212 2.3E-106 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1394 51401ef8ce727332046234166c1c3270 349 SUPERFAMILY SSF46626 47 198 1.73E-46 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1394 51401ef8ce727332046234166c1c3270 349 Gene3D G3DSA:1.10.760.10 62 340 2.3E-106 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1394 51401ef8ce727332046234166c1c3270 349 Pfam PF03150 Di-haem cytochrome c peroxidase 65 212 4.3E-47 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 dqs_1394 51401ef8ce727332046234166c1c3270 349 SUPERFAMILY SSF46626 200 346 1.81E-41 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1394 51401ef8ce727332046234166c1c3270 349 PIRSF PIRSF000294 17 348 3.7E-99 T 11-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 dqs_1394 51401ef8ce727332046234166c1c3270 349 Pfam PF00034 Cytochrome c 220 335 6.3E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2361 c1384cfff0a96c62b45ba673f3f0a6b9 287 Gene3D G3DSA:3.40.190.10 52 265 1.2E-48 T 11-10-2018 dqs_2361 c1384cfff0a96c62b45ba673f3f0a6b9 287 Gene3D G3DSA:3.40.190.10 130 229 1.2E-48 T 11-10-2018 dqs_2361 c1384cfff0a96c62b45ba673f3f0a6b9 287 SMART SM00062 44 260 1.4E-15 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_2361 c1384cfff0a96c62b45ba673f3f0a6b9 287 SUPERFAMILY SSF53850 36 265 2.26E-31 T 11-10-2018 dqs_2361 c1384cfff0a96c62b45ba673f3f0a6b9 287 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 52 254 1.2E-27 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_3238 aa91033c5181fab1bbcc86ce70313905 175 Gene3D G3DSA:3.30.70.2060 57 116 7.3E-18 T 11-10-2018 dqs_3238 aa91033c5181fab1bbcc86ce70313905 175 Pfam PF05573 NosL 18 163 2.0E-55 T 11-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL dqs_3238 aa91033c5181fab1bbcc86ce70313905 175 Gene3D G3DSA:3.30.70.2050 117 174 2.1E-10 T 11-10-2018 dqs_3238 aa91033c5181fab1bbcc86ce70313905 175 SUPERFAMILY SSF160387 57 174 7.06E-39 T 11-10-2018 dqs_1051 b4821fd7d657cd858aaef8851244d2f8 102 Pfam PF04341 Protein of unknown function, DUF485 11 97 1.8E-34 T 11-10-2018 IPR007436 Protein of unknown function DUF485 dqs_0116 d07e94d39b6b078158a564903b47efac 295 Pfam PF00892 EamA-like transporter family 11 142 1.3E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0116 d07e94d39b6b078158a564903b47efac 295 Pfam PF00892 EamA-like transporter family 154 286 2.7E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0116 d07e94d39b6b078158a564903b47efac 295 SUPERFAMILY SSF103481 190 292 4.45E-8 T 11-10-2018 dqs_0116 d07e94d39b6b078158a564903b47efac 295 SUPERFAMILY SSF103481 48 145 1.27E-15 T 11-10-2018 dqs_0914 4d89a9ef4f1d6adec298ccd24cf3cdd9 467 SMART SM00345 18 77 4.6E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_0914 4d89a9ef4f1d6adec298ccd24cf3cdd9 467 SUPERFAMILY SSF46785 7 81 3.31E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0914 4d89a9ef4f1d6adec298ccd24cf3cdd9 467 Gene3D G3DSA:1.10.10.10 2 78 4.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0914 4d89a9ef4f1d6adec298ccd24cf3cdd9 467 Gene3D G3DSA:3.90.1150.10 108 456 3.4E-87 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_0914 4d89a9ef4f1d6adec298ccd24cf3cdd9 467 Gene3D G3DSA:3.40.640.10 147 363 3.4E-87 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_0914 4d89a9ef4f1d6adec298ccd24cf3cdd9 467 Pfam PF00155 Aminotransferase class I and II 139 458 5.3E-38 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_0914 4d89a9ef4f1d6adec298ccd24cf3cdd9 467 SUPERFAMILY SSF53383 104 460 8.47E-86 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_0914 4d89a9ef4f1d6adec298ccd24cf3cdd9 467 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 3.2E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_1118 3c0a46988157afb7855050cd2a649423 382 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 276 282 - T 11-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 dqs_1118 3c0a46988157afb7855050cd2a649423 382 PIRSF PIRSF000138 2 382 8.9E-127 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 dqs_1118 3c0a46988157afb7855050cd2a649423 382 Pfam PF01070 FMN-dependent dehydrogenase 17 378 1.3E-132 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 dqs_1118 3c0a46988157afb7855050cd2a649423 382 SUPERFAMILY SSF51395 6 378 1.1E-104 T 11-10-2018 dqs_1118 3c0a46988157afb7855050cd2a649423 382 Gene3D G3DSA:3.20.20.70 5 382 2.8E-132 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2834 4cdddcaa6586e4f0327af0ad5a9d1224 374 SUPERFAMILY SSF52518 7 169 7.25E-25 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2834 4cdddcaa6586e4f0327af0ad5a9d1224 374 Gene3D G3DSA:3.40.50.970 182 373 3.7E-32 T 11-10-2018 dqs_2834 4cdddcaa6586e4f0327af0ad5a9d1224 374 TIGRFAM TIGR03297 Ppyr-DeCO2ase: phosphonopyruvate decarboxylase 16 370 3.8E-140 T 11-10-2018 IPR017684 Phosphonopyruvate decarboxylase GO:0032923|GO:0033980 KEGG: 00440+4.1.1.82|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7510|MetaCyc: PWY-7769 dqs_2834 4cdddcaa6586e4f0327af0ad5a9d1224 374 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 169 5.9E-25 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 dqs_2834 4cdddcaa6586e4f0327af0ad5a9d1224 374 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 227 343 2.6E-16 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 dqs_2834 4cdddcaa6586e4f0327af0ad5a9d1224 374 Gene3D G3DSA:3.40.50.970 6 181 3.1E-23 T 11-10-2018 dqs_2834 4cdddcaa6586e4f0327af0ad5a9d1224 374 SUPERFAMILY SSF52518 188 370 4.83E-35 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2673 b74191665f3006555f575a97f9ede14c 438 Pfam PF00355 Rieske [2Fe-2S] domain 45 131 2.2E-18 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 204 419 1.4E-18 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 SUPERFAMILY SSF50022 13 169 3.4E-44 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 SUPERFAMILY SSF55961 179 418 9.42E-49 T 11-10-2018 dqs_2673 b74191665f3006555f575a97f9ede14c 438 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 88 111 - T 11-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 Gene3D G3DSA:2.102.10.10 45 178 4.4E-94 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 29 54 2.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 193 215 2.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 60 75 2.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 102 122 2.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 154 180 2.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 81 101 2.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2673 b74191665f3006555f575a97f9ede14c 438 Gene3D G3DSA:3.90.380.10 21 418 4.4E-94 T 11-10-2018 dqs_2461 2889596e7b92dc3c891fb92f4d4b9470 139 Gene3D G3DSA:3.30.420.270 62 131 2.3E-9 T 11-10-2018 dqs_2461 2889596e7b92dc3c891fb92f4d4b9470 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 135 9.9E-31 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 dqs_4105 2c07b489b30104c7274d4aac836593ff 306 SUPERFAMILY SSF81606 2 244 1.57E-54 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_4105 2c07b489b30104c7274d4aac836593ff 306 Pfam PF13672 Protein phosphatase 2C 8 203 1.1E-19 T 11-10-2018 dqs_4105 2c07b489b30104c7274d4aac836593ff 306 SMART SM00332 1 241 1.2E-8 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_4105 2c07b489b30104c7274d4aac836593ff 306 SMART SM00331 8 243 1.3E-14 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_4105 2c07b489b30104c7274d4aac836593ff 306 Gene3D G3DSA:3.60.40.10 1 247 6.1E-52 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_3604 d35805393374708d099f19d630a04f36 166 Pfam PF00156 Phosphoribosyl transferase domain 5 132 1.2E-16 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 dqs_3604 d35805393374708d099f19d630a04f36 166 SUPERFAMILY SSF53271 7 140 2.36E-34 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like dqs_3604 d35805393374708d099f19d630a04f36 166 Gene3D G3DSA:3.40.50.2020 2 157 2.5E-39 T 11-10-2018 dqs_2568 a77ed01a676703914507e0abc3b1abf6 328 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 34 310 9.6E-56 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 dqs_2568 a77ed01a676703914507e0abc3b1abf6 328 Gene3D G3DSA:3.40.190.170 31 327 6.4E-78 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily dqs_2568 a77ed01a676703914507e0abc3b1abf6 328 PIRSF PIRSF006470 3 324 2.4E-65 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 dqs_1758 f04c5c85432f4c041f70794cd1571cc0 146 PIRSF PIRSF004923 1 129 1.9E-18 T 11-10-2018 IPR026268 Protein RseC dqs_1758 f04c5c85432f4c041f70794cd1571cc0 146 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 7 127 8.0E-23 T 11-10-2018 dqs_1053 a0e3f5eea834d9d4584089e03ef77091 223 Gene3D G3DSA:1.10.10.10 121 220 3.8E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1053 a0e3f5eea834d9d4584089e03ef77091 223 SUPERFAMILY SSF52172 1 166 1.85E-33 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1053 a0e3f5eea834d9d4584089e03ef77091 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 211 4.6E-11 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_1053 a0e3f5eea834d9d4584089e03ef77091 223 SMART SM00448 1 112 5.7E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1053 a0e3f5eea834d9d4584089e03ef77091 223 Gene3D G3DSA:3.40.50.2300 1 120 8.2E-31 T 11-10-2018 dqs_1053 a0e3f5eea834d9d4584089e03ef77091 223 Pfam PF00072 Response regulator receiver domain 3 112 5.2E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1053 a0e3f5eea834d9d4584089e03ef77091 223 SMART SM00862 145 211 8.0E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 dqs_1862 79c4650766617db7933517528d0281ba 140 SUPERFAMILY SSF55729 2 140 3.21E-32 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_1862 79c4650766617db7933517528d0281ba 140 Gene3D G3DSA:3.40.630.30 1 140 6.0E-42 T 11-10-2018 dqs_1862 79c4650766617db7933517528d0281ba 140 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 6 136 9.3E-37 T 11-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 dqs_1862 79c4650766617db7933517528d0281ba 140 Pfam PF00583 Acetyltransferase (GNAT) family 28 114 3.9E-15 T 11-10-2018 IPR000182 GNAT domain dqs_2957 45f4cb8dac6975d6f296c641f925ab29 305 Pfam PF08241 Methyltransferase domain 55 165 1.7E-15 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_2957 45f4cb8dac6975d6f296c641f925ab29 305 Gene3D G3DSA:3.40.50.150 30 235 9.1E-30 T 11-10-2018 dqs_2957 45f4cb8dac6975d6f296c641f925ab29 305 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 10 281 26.262 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 dqs_2957 45f4cb8dac6975d6f296c641f925ab29 305 SUPERFAMILY SSF53335 16 281 1.72E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0371 0269c97924d53fe809f6b9d6b56c2777 251 SUPERFAMILY SSF57783 208 249 3.23E-6 T 11-10-2018 dqs_0371 0269c97924d53fe809f6b9d6b56c2777 251 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 213 250 8.1E-11 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 dqs_0371 0269c97924d53fe809f6b9d6b56c2777 251 Pfam PF08378 Nuclease-related domain 32 142 9.4E-29 T 11-10-2018 IPR011528 Nuclease-related domain, NERD dqs_3306 941e29e1af7364c1643afa0d6c8303ac 291 Pfam PF13649 Methyltransferase domain 71 170 4.9E-21 T 11-10-2018 dqs_3306 941e29e1af7364c1643afa0d6c8303ac 291 SUPERFAMILY SSF53335 65 223 9.34E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3306 941e29e1af7364c1643afa0d6c8303ac 291 Gene3D G3DSA:3.40.50.150 27 277 6.6E-34 T 11-10-2018 dqs_3306 941e29e1af7364c1643afa0d6c8303ac 291 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 164 178 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 dqs_0844 edebbdf76e5b1b69a1bb68b41dfbb0fd 187 SUPERFAMILY SSF52833 2 186 2.46E-51 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0844 edebbdf76e5b1b69a1bb68b41dfbb0fd 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 7.8E-96 T 11-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 dqs_0844 edebbdf76e5b1b69a1bb68b41dfbb0fd 187 Gene3D G3DSA:3.40.30.10 1 186 4.1E-57 T 11-10-2018 dqs_0844 edebbdf76e5b1b69a1bb68b41dfbb0fd 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 5.6E-7 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_0844 edebbdf76e5b1b69a1bb68b41dfbb0fd 187 PIRSF PIRSF000239 1 187 2.4E-44 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_0844 edebbdf76e5b1b69a1bb68b41dfbb0fd 187 Pfam PF00578 AhpC/TSA family 5 133 6.7E-29 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_0346 22a8dab1e2215d3e706a21df2905f491 365 Pfam PF01734 Patatin-like phospholipase 11 217 1.0E-18 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 dqs_0346 22a8dab1e2215d3e706a21df2905f491 365 Pfam PF12536 Patatin phospholipase 297 341 7.9E-5 T 11-10-2018 IPR021095 Protein of unknown function DUF3734 dqs_0346 22a8dab1e2215d3e706a21df2905f491 365 Gene3D G3DSA:3.40.1090.10 131 234 1.5E-8 T 11-10-2018 dqs_0346 22a8dab1e2215d3e706a21df2905f491 365 Gene3D G3DSA:3.40.1090.10 2 90 5.3E-13 T 11-10-2018 dqs_0346 22a8dab1e2215d3e706a21df2905f491 365 SUPERFAMILY SSF52151 8 254 7.32E-35 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase dqs_1471 e680801c48ea16709f74d6f30285764b 147 PRINTS PR01438 Universal stress protein signature 125 147 1.2E-15 T 11-10-2018 IPR006015 Universal stress protein A dqs_1471 e680801c48ea16709f74d6f30285764b 147 PRINTS PR01438 Universal stress protein signature 2 20 1.2E-15 T 11-10-2018 IPR006015 Universal stress protein A dqs_1471 e680801c48ea16709f74d6f30285764b 147 PRINTS PR01438 Universal stress protein signature 107 119 1.2E-15 T 11-10-2018 IPR006015 Universal stress protein A dqs_1471 e680801c48ea16709f74d6f30285764b 147 Pfam PF00582 Universal stress protein family 1 147 2.0E-30 T 11-10-2018 IPR006016 UspA dqs_1471 e680801c48ea16709f74d6f30285764b 147 SUPERFAMILY SSF52402 1 147 8.37E-35 T 11-10-2018 dqs_1471 e680801c48ea16709f74d6f30285764b 147 Gene3D G3DSA:3.40.50.620 1 147 1.9E-35 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_1182 ee1c492ad8c89c5f594b3db3ce2fdcbb 101 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 83 1.0E-15 T 11-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 Gene3D G3DSA:1.20.1640.10 591 774 3.9E-13 T 11-10-2018 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 Gene3D G3DSA:1.20.1640.10 210 389 1.1E-9 T 11-10-2018 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 SUPERFAMILY SSF82866 54 383 1.06E-30 T 11-10-2018 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 SUPERFAMILY SSF82866 572 770 2.09E-31 T 11-10-2018 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 Pfam PF03176 MMPL family 561 770 1.1E-18 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 Pfam PF03176 MMPL family 163 393 8.3E-6 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 PRINTS PR00702 Acriflavin resistance protein family signature 327 351 1.9E-5 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 PRINTS PR00702 Acriflavin resistance protein family signature 744 767 1.9E-5 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_2384 e553934cd57aba8179ba56b986d6d8d6 787 PRINTS PR00702 Acriflavin resistance protein family signature 669 693 1.9E-5 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 dqs_1830 5079ce4dfd5ddf9b9df178d40e21f6cf 274 TIGRFAM TIGR04336 AmmeMemoSam_B: AmmeMemoRadiSam system protein B 7 263 1.9E-81 T 11-10-2018 dqs_1830 5079ce4dfd5ddf9b9df178d40e21f6cf 274 Hamap MF_00055 MEMO1 family protein . 5 264 48.103 T 11-10-2018 IPR002737 MEMO1 family Reactome: R-HSA-6785631 dqs_1830 5079ce4dfd5ddf9b9df178d40e21f6cf 274 Pfam PF01875 Memo-like protein 9 261 2.5E-46 T 11-10-2018 IPR002737 MEMO1 family Reactome: R-HSA-6785631 dqs_1830 5079ce4dfd5ddf9b9df178d40e21f6cf 274 Gene3D G3DSA:3.40.830.10 4 264 2.1E-57 T 11-10-2018 dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 Pfam PF00106 short chain dehydrogenase 12 198 1.5E-55 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 Gene3D G3DSA:3.40.50.720 7 245 8.2E-67 T 11-10-2018 dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 1.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 1.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 239 246 1.5E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.5E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.5E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.5E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.5E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.5E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 SUPERFAMILY SSF51735 4 243 3.49E-67 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1957 12c32177585a54da0836cdd4fc6f079a 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 194 0.0012 T 11-10-2018 dqs_3187 b038e9230dc86aa5d7bdd5dea3d67eb8 154 Pfam PF16155 Domain of unknown function (DUF4863) 9 152 3.5E-58 T 11-10-2018 IPR032345 Protein of unknown function DUF4863 dqs_3292 eef521a81d707a8f3ce69ea8e724c065 231 Pfam PF13649 Methyltransferase domain 59 154 4.8E-14 T 11-10-2018 dqs_3292 eef521a81d707a8f3ce69ea8e724c065 231 Gene3D G3DSA:3.40.50.150 12 218 8.5E-22 T 11-10-2018 dqs_3292 eef521a81d707a8f3ce69ea8e724c065 231 SUPERFAMILY SSF53335 15 226 7.52E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1247 802309776605cb5d8b8b42b2744e9148 78 Gene3D G3DSA:2.30.170.40 2 78 4.0E-33 T 11-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1247 802309776605cb5d8b8b42b2744e9148 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 3.8E-28 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_1247 802309776605cb5d8b8b42b2744e9148 78 SUPERFAMILY SSF143800 2 76 2.55E-31 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1247 802309776605cb5d8b8b42b2744e9148 78 Pfam PF00830 Ribosomal L28 family 3 62 5.9E-29 T 11-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1247 802309776605cb5d8b8b42b2744e9148 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.346 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3653 1a0042c752d18d36cfe54f19e8f07cb3 682 PIRSF PIRSF005091 40 615 8.5E-57 T 11-10-2018 IPR012160 Lipoteichoic acid synthase-like dqs_3653 1a0042c752d18d36cfe54f19e8f07cb3 682 SUPERFAMILY SSF53649 292 595 2.43E-54 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 dqs_3653 1a0042c752d18d36cfe54f19e8f07cb3 682 Gene3D G3DSA:3.40.720.10 288 590 1.7E-52 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 dqs_3653 1a0042c752d18d36cfe54f19e8f07cb3 682 Pfam PF00884 Sulfatase 294 582 5.7E-40 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 dqs_0366 d3bfdc208b0c646ee7ee548cd6ba7524 362 Pfam PF06114 IrrE N-terminal-like domain 225 336 1.7E-10 T 11-10-2018 IPR010359 IrrE N-terminal-like domain dqs_0366 d3bfdc208b0c646ee7ee548cd6ba7524 362 Gene3D G3DSA:1.10.260.40 2 96 4.9E-14 T 11-10-2018 dqs_0366 d3bfdc208b0c646ee7ee548cd6ba7524 362 SUPERFAMILY SSF47413 14 86 4.13E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_0533 afe047d839eeb4414767daad83fa554f 498 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 381 478 3.9E-19 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis dqs_0533 afe047d839eeb4414767daad83fa554f 498 Gene3D G3DSA:3.20.20.70 49 308 3.0E-32 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0533 afe047d839eeb4414767daad83fa554f 498 SUPERFAMILY SSF102114 50 267 3.79E-39 T 11-10-2018 dqs_0533 afe047d839eeb4414767daad83fa554f 498 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 36 479 9.0E-194 T 11-10-2018 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 dqs_0533 afe047d839eeb4414767daad83fa554f 498 SUPERFAMILY SSF53146 368 482 7.59E-28 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_0533 afe047d839eeb4414767daad83fa554f 498 Gene3D G3DSA:3.30.420.130 367 488 4.4E-27 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_0533 afe047d839eeb4414767daad83fa554f 498 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 62 73 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 dqs_0533 afe047d839eeb4414767daad83fa554f 498 Pfam PF04055 Radical SAM superfamily 62 241 1.2E-28 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_2809 3904b342b286d15d2bf992f27d8d7f6a 219 Gene3D G3DSA:3.30.1020.10 155 218 6.2E-27 T 11-10-2018 dqs_2809 3904b342b286d15d2bf992f27d8d7f6a 219 Pfam PF00578 AhpC/TSA family 5 143 2.0E-29 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_2809 3904b342b286d15d2bf992f27d8d7f6a 219 SUPERFAMILY SSF52833 3 216 2.19E-68 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2809 3904b342b286d15d2bf992f27d8d7f6a 219 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 165 204 2.6E-12 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_2809 3904b342b286d15d2bf992f27d8d7f6a 219 PIRSF PIRSF000239 1 217 2.1E-73 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_2809 3904b342b286d15d2bf992f27d8d7f6a 219 Gene3D G3DSA:3.40.30.10 1 154 2.9E-48 T 11-10-2018 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 339 1.7E-118 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 PIRSF PIRSF000854 1 788 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 Gene3D G3DSA:3.20.20.60 475 786 6.0E-101 T 11-10-2018 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 Gene3D G3DSA:3.30.1490.20 1 190 6.1E-71 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 411 422 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 SUPERFAMILY SSF52009 345 464 3.01E-35 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 Pfam PF00391 PEP-utilising enzyme, mobile domain 381 452 1.1E-26 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 SUPERFAMILY SSF56059 1 381 7.3E-111 T 11-10-2018 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 SUPERFAMILY SSF51621 458 785 1.1E-97 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 691 709 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 Gene3D G3DSA:3.30.470.20 191 353 7.7E-61 T 11-10-2018 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 Gene3D G3DSA:3.50.30.10 354 464 2.2E-41 T 11-10-2018 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 478 781 4.8E-61 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 dqs_2300 877d42d2c26d72e3544eccde646b1d6e 788 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 5 785 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 dqs_1804 f94f5bbbdcfe68fcbb5e4bb4e61d2968 86 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 1.2E-23 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 dqs_1804 f94f5bbbdcfe68fcbb5e4bb4e61d2968 86 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 1.8E-27 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 dqs_1804 f94f5bbbdcfe68fcbb5e4bb4e61d2968 86 Gene3D G3DSA:3.30.1070.10 1 83 1.1E-25 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 dqs_1804 f94f5bbbdcfe68fcbb5e4bb4e61d2968 86 SUPERFAMILY SSF55229 36 84 4.32E-15 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 dqs_1804 f94f5bbbdcfe68fcbb5e4bb4e61d2968 86 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 84 18.179 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 dqs_2016 a1fdd2a28dacc037eedd72925503fb88 351 Pfam PF02486 Replication initiation factor 96 257 2.8E-24 T 11-10-2018 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 dqs_0053 fef8ad29c4eddf84d7f97cfe2aaf6b94 256 SUPERFAMILY SSF88713 2 251 8.89E-96 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 dqs_0053 fef8ad29c4eddf84d7f97cfe2aaf6b94 256 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 43.466 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 dqs_0053 fef8ad29c4eddf84d7f97cfe2aaf6b94 256 Pfam PF03746 LamB/YcsF family 4 241 1.5E-98 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 dqs_0053 fef8ad29c4eddf84d7f97cfe2aaf6b94 256 Gene3D G3DSA:3.20.20.370 2 254 2.4E-100 T 11-10-2018 dqs_3825 43f19ef4e752041dc1066615c6cd432f 74 Pfam PF10932 Protein of unknown function (DUF2783) 3 72 1.9E-31 T 11-10-2018 IPR021233 Protein of unknown function DUF2783 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 200 216 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 SUPERFAMILY SSF75620 1 317 6.02E-128 T 11-10-2018 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 320 34.743 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 318 3.1E-149 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 SMART SM00937 40 150 1.9E-51 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 Pfam PF00472 RF-1 domain 184 292 1.2E-42 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 Gene3D G3DSA:3.30.160.20 181 276 9.6E-98 T 11-10-2018 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 Pfam PF03462 PCRF domain 1 175 3.1E-50 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 Gene3D G3DSA:1.20.58.410 1 71 7.4E-16 T 11-10-2018 dqs_1620 998a5f491e7eb5498de4a63fb85a77bf 320 Gene3D G3DSA:3.30.70.1660 85 312 9.6E-98 T 11-10-2018 dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 146 2.2E-47 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 SUPERFAMILY SSF55653 59 147 2.88E-26 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 Gene3D G3DSA:3.10.430.100 61 148 4.7E-27 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 26.707 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 145 3.8E-26 T 11-10-2018 IPR020069 Ribosomal protein L9, C-terminal dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 Gene3D G3DSA:3.40.5.10 1 50 1.6E-23 T 11-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 SUPERFAMILY SSF55658 1 57 9.77E-19 T 11-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 7.8E-23 T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_0790 471e1a7e777fd17833ea74734fd8d9cf 151 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_2378 edf687a37209a594d85b655ff63c70b7 395 Pfam PF10082 Putative beta-barrel porin 2 217 385 8.1E-9 T 11-10-2018 IPR018759 Putative beta-barrel porin 2 dqs_2378 edf687a37209a594d85b655ff63c70b7 395 Gene3D G3DSA:2.40.170.20 148 395 3.7E-6 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2842 a5157f2fe004dfc35771c2b8c065fd29 136 Pfam PF02561 Flagellar protein FliS 13 129 2.5E-38 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 dqs_2842 a5157f2fe004dfc35771c2b8c065fd29 136 SUPERFAMILY SSF101116 13 133 1.03E-38 T 11-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 dqs_2842 a5157f2fe004dfc35771c2b8c065fd29 136 PIRSF PIRSF039090 5 136 3.8E-41 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 dqs_2842 a5157f2fe004dfc35771c2b8c065fd29 136 Gene3D G3DSA:1.20.120.340 1 134 2.8E-43 T 11-10-2018 dqs_2842 a5157f2fe004dfc35771c2b8c065fd29 136 TIGRFAM TIGR00208 fliS: flagellar protein FliS 7 129 6.6E-34 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 dqs_1119 4207de56d038ad78025875fa0e718784 269 Pfam PF13525 Outer membrane lipoprotein 39 241 5.5E-67 T 11-10-2018 IPR039565 Outer membrane lipoprotein BamD-like dqs_1119 4207de56d038ad78025875fa0e718784 269 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 8 249 38.739 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD dqs_1119 4207de56d038ad78025875fa0e718784 269 Gene3D G3DSA:1.25.40.10 38 257 2.5E-62 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1119 4207de56d038ad78025875fa0e718784 269 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 14 255 1.4E-91 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD dqs_1119 4207de56d038ad78025875fa0e718784 269 SUPERFAMILY SSF48452 37 118 1.05E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2863 96194645c19e62fc3e6a9ee6f4ddc99d 270 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 256 7.9E-69 T 11-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 dqs_2863 96194645c19e62fc3e6a9ee6f4ddc99d 270 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 7.7E-32 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 dqs_2863 96194645c19e62fc3e6a9ee6f4ddc99d 270 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 7.7E-32 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 dqs_2863 96194645c19e62fc3e6a9ee6f4ddc99d 270 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 7.7E-32 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 dqs_2863 96194645c19e62fc3e6a9ee6f4ddc99d 270 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 7.7E-32 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 dqs_2863 96194645c19e62fc3e6a9ee6f4ddc99d 270 Pfam PF01311 Bacterial export proteins, family 1 14 247 8.6E-69 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 dqs_3661 96f0674c95a877cf54dac74e89a5ccf6 313 Pfam PF03186 CobD/Cbib protein 11 290 6.6E-90 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 dqs_3661 96f0674c95a877cf54dac74e89a5ccf6 313 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 311 102.151 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 dqs_3661 96f0674c95a877cf54dac74e89a5ccf6 313 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 11 302 6.0E-50 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 dqs_3139 1c81433342eb03cc86324ec950b519ff 358 SUPERFAMILY SSF46785 21 135 1.69E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3139 1c81433342eb03cc86324ec950b519ff 358 Pfam PF03466 LysR substrate binding domain 114 310 2.5E-19 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3139 1c81433342eb03cc86324ec950b519ff 358 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 28 86 1.5E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3139 1c81433342eb03cc86324ec950b519ff 358 Gene3D G3DSA:3.40.190.10 205 286 8.0E-6 T 11-10-2018 dqs_3139 1c81433342eb03cc86324ec950b519ff 358 SUPERFAMILY SSF53850 117 310 1.56E-20 T 11-10-2018 dqs_3139 1c81433342eb03cc86324ec950b519ff 358 Gene3D G3DSA:3.40.190.10 112 201 1.3E-9 T 11-10-2018 dqs_3139 1c81433342eb03cc86324ec950b519ff 358 Gene3D G3DSA:1.10.10.10 26 111 1.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3139 1c81433342eb03cc86324ec950b519ff 358 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 54 64 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3139 1c81433342eb03cc86324ec950b519ff 358 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3139 1c81433342eb03cc86324ec950b519ff 358 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 64 75 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2912 70485b49c67ed1bd7bfa1871d10e0c96 339 Pfam PF00561 alpha/beta hydrolase fold 67 306 3.7E-13 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2912 70485b49c67ed1bd7bfa1871d10e0c96 339 PIRSF PIRSF005211 6 333 1.1E-101 T 11-10-2018 IPR012020 AB hydrolase 4 family dqs_2912 70485b49c67ed1bd7bfa1871d10e0c96 339 SUPERFAMILY SSF53474 16 306 2.63E-41 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3531 2e961640e672787a8f6294db1f692916 209 SMART SM01390 3 98 1.9E-52 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 dqs_3531 2e961640e672787a8f6294db1f692916 209 Gene3D G3DSA:3.10.290.10 98 194 3.0E-84 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 dqs_3531 2e961640e672787a8f6294db1f692916 209 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 209 34.612 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 dqs_3531 2e961640e672787a8f6294db1f692916 209 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 4 209 1.4E-71 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 dqs_3531 2e961640e672787a8f6294db1f692916 209 Pfam PF01479 S4 domain 100 146 1.0E-18 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3531 2e961640e672787a8f6294db1f692916 209 SUPERFAMILY SSF55174 2 209 6.67E-67 T 11-10-2018 dqs_3531 2e961640e672787a8f6294db1f692916 209 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 98 1.2E-31 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 dqs_3531 2e961640e672787a8f6294db1f692916 209 Gene3D G3DSA:1.10.1050.10 6 209 3.0E-84 T 11-10-2018 dqs_3531 2e961640e672787a8f6294db1f692916 209 SMART SM00363 99 163 5.4E-19 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3578 c52ed87b5f386f759cca036be16e817c 234 SUPERFAMILY SSF52540 1 136 1.04E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3578 c52ed87b5f386f759cca036be16e817c 234 Gene3D G3DSA:3.40.50.300 4 220 7.4E-12 T 11-10-2018 dqs_3961 5ea4127f96426ea6405827d0fed1e5fc 503 SMART SM00267 324 496 2.3E-57 T 11-10-2018 IPR000160 GGDEF domain dqs_3961 5ea4127f96426ea6405827d0fed1e5fc 503 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 331 494 1.3E-46 T 11-10-2018 IPR000160 GGDEF domain dqs_3961 5ea4127f96426ea6405827d0fed1e5fc 503 Gene3D G3DSA:3.30.70.270 321 496 4.4E-56 T 11-10-2018 dqs_3961 5ea4127f96426ea6405827d0fed1e5fc 503 Gene3D G3DSA:3.30.450.20 25 176 1.6E-31 T 11-10-2018 dqs_3961 5ea4127f96426ea6405827d0fed1e5fc 503 SUPERFAMILY SSF55073 340 495 4.71E-47 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_3961 5ea4127f96426ea6405827d0fed1e5fc 503 Pfam PF00990 Diguanylate cyclase, GGDEF domain 335 492 1.4E-42 T 11-10-2018 IPR000160 GGDEF domain dqs_0523 ec36333d41401c00e17256302305966d 208 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 7 195 25.269 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 dqs_0523 ec36333d41401c00e17256302305966d 208 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 15 193 5.6E-58 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 dqs_0523 ec36333d41401c00e17256302305966d 208 SMART SM00900 101 193 1.1E-34 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 dqs_0523 ec36333d41401c00e17256302305966d 208 Pfam PF04205 FMN-binding domain 101 190 5.0E-18 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 dqs_0523 ec36333d41401c00e17256302305966d 208 PIRSF PIRSF006091 2 205 4.4E-68 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 dqs_2735 c8cc457eeb0cb0518a8437143e60fe7f 261 Gene3D G3DSA:1.10.10.60 156 258 4.2E-23 T 11-10-2018 dqs_2735 c8cc457eeb0cb0518a8437143e60fe7f 261 Pfam PF12833 Helix-turn-helix domain 178 253 6.0E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2735 c8cc457eeb0cb0518a8437143e60fe7f 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 4.6E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_2735 c8cc457eeb0cb0518a8437143e60fe7f 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 4.6E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_2735 c8cc457eeb0cb0518a8437143e60fe7f 261 SUPERFAMILY SSF51182 11 181 4.15E-18 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2735 c8cc457eeb0cb0518a8437143e60fe7f 261 SUPERFAMILY SSF46689 208 253 1.7E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_2735 c8cc457eeb0cb0518a8437143e60fe7f 261 Gene3D G3DSA:2.60.120.10 10 96 1.2E-8 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_2735 c8cc457eeb0cb0518a8437143e60fe7f 261 SMART SM00342 172 254 4.8E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2257 873ef681d58ee10199b921f65927e14c 298 SUPERFAMILY SSF53474 9 289 1.59E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2257 873ef681d58ee10199b921f65927e14c 298 Gene3D G3DSA:3.40.50.1820 4 291 1.5E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2257 873ef681d58ee10199b921f65927e14c 298 Pfam PF12697 Alpha/beta hydrolase family 31 284 7.6E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2257 873ef681d58ee10199b921f65927e14c 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 5.1E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2257 873ef681d58ee10199b921f65927e14c 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 5.1E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2257 873ef681d58ee10199b921f65927e14c 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 5.1E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 3.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 3.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 Gene3D G3DSA:3.40.50.720 1 246 1.0E-60 T 11-10-2018 dqs_0497 51452314c15c60146915a08feea62121 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 243 7.4E-47 T 11-10-2018 dqs_0497 51452314c15c60146915a08feea62121 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 1.0E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.0E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.0E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.0E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.0E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.0E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_0497 51452314c15c60146915a08feea62121 248 SUPERFAMILY SSF51735 8 246 1.57E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2350 bc94261536d1cb1e5fc4ba1cc43bd91a 678 Pfam PF00593 TonB dependent receptor 253 676 5.5E-39 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_2350 bc94261536d1cb1e5fc4ba1cc43bd91a 678 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 661 678 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site dqs_2350 bc94261536d1cb1e5fc4ba1cc43bd91a 678 SUPERFAMILY SSF56935 28 678 8.24E-99 T 11-10-2018 dqs_2350 bc94261536d1cb1e5fc4ba1cc43bd91a 678 Gene3D G3DSA:2.170.130.10 29 164 2.5E-19 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_2350 bc94261536d1cb1e5fc4ba1cc43bd91a 678 Gene3D G3DSA:2.40.170.20 165 678 3.7E-74 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_2350 bc94261536d1cb1e5fc4ba1cc43bd91a 678 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 161 1.7E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_4121 993e926a10065bd461afc2edd82779ae 723 Pfam PF00270 DEAD/DEAH box helicase 192 355 9.6E-11 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 dqs_4121 993e926a10065bd461afc2edd82779ae 723 Gene3D G3DSA:3.40.50.300 180 372 2.9E-72 T 11-10-2018 dqs_4121 993e926a10065bd461afc2edd82779ae 723 SMART SM00490 485 582 5.7E-4 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_4121 993e926a10065bd461afc2edd82779ae 723 SMART SM00487 187 385 7.4E-17 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_4121 993e926a10065bd461afc2edd82779ae 723 TIGRFAM TIGR00595 priA: primosomal protein N' 213 721 1.7E-170 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 dqs_4121 993e926a10065bd461afc2edd82779ae 723 SUPERFAMILY SSF52540 212 614 9.58E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4121 993e926a10065bd461afc2edd82779ae 723 Gene3D G3DSA:1.10.8.630 2 111 7.7E-29 T 11-10-2018 dqs_4121 993e926a10065bd461afc2edd82779ae 723 SUPERFAMILY SSF52540 189 366 3.96E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4121 993e926a10065bd461afc2edd82779ae 723 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 723 23.59 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 dqs_2008 0e9eab0f6c4086b5b52e07c32b1fb2cd 73 Pfam PF01361 Tautomerase enzyme 2 56 1.1E-12 T 11-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 dqs_2008 0e9eab0f6c4086b5b52e07c32b1fb2cd 73 Gene3D G3DSA:3.30.429.10 2 71 1.1E-20 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_2008 0e9eab0f6c4086b5b52e07c32b1fb2cd 73 SUPERFAMILY SSF55331 2 61 4.45E-17 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_0478 d2544068814a16d766b2e8c39c429d90 427 Gene3D G3DSA:2.40.160.60 25 427 1.9E-126 T 11-10-2018 dqs_0478 d2544068814a16d766b2e8c39c429d90 427 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 22 427 2.5E-100 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) dqs_0478 d2544068814a16d766b2e8c39c429d90 427 SUPERFAMILY SSF56935 25 427 2.62E-93 T 11-10-2018 dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 SUPERFAMILY SSF53850 104 303 7.78E-28 T 11-10-2018 dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 Gene3D G3DSA:1.10.10.10 15 101 2.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 SUPERFAMILY SSF46785 16 131 1.66E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 82 1.6E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 8.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 59 8.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 59 70 8.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 Pfam PF03466 LysR substrate binding domain 108 304 1.5E-13 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 Gene3D G3DSA:3.40.190.10 184 278 2.1E-45 T 11-10-2018 dqs_2681 95cc2b929129489a2b815fcc5d00ab31 320 Gene3D G3DSA:3.40.190.10 104 301 2.1E-45 T 11-10-2018 dqs_0687 3d2905acb50891f43d94f4a26cad733a 69 Gene3D G3DSA:2.10.70.10 29 69 5.8E-14 T 11-10-2018 dqs_0687 3d2905acb50891f43d94f4a26cad733a 69 Pfam PF10636 Hemin uptake protein hemP 34 69 9.0E-17 T 11-10-2018 IPR019600 Hemin uptake protein HemP dqs_3017 ef9310f14a69e08545eb2e0a9c48982a 688 SUPERFAMILY SSF55486 6 684 1.06E-198 T 11-10-2018 dqs_3017 ef9310f14a69e08545eb2e0a9c48982a 688 Gene3D G3DSA:1.10.1370.40 16 683 8.4E-256 T 11-10-2018 dqs_3017 ef9310f14a69e08545eb2e0a9c48982a 688 Pfam PF01432 Peptidase family M3 225 684 1.4E-137 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 dqs_3017 ef9310f14a69e08545eb2e0a9c48982a 688 Gene3D G3DSA:1.10.1370.10 143 612 8.4E-256 T 11-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 dqs_1607 6fc58685ddc5790bb03b3013621f447d 943 Gene3D G3DSA:3.60.10.10 522 825 3.7E-32 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_1607 6fc58685ddc5790bb03b3013621f447d 943 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 526 818 1.7E-10 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase dqs_1607 6fc58685ddc5790bb03b3013621f447d 943 Pfam PF00932 Lamin Tail Domain 24 137 1.5E-12 T 11-10-2018 IPR001322 Lamin tail domain dqs_1607 6fc58685ddc5790bb03b3013621f447d 943 SUPERFAMILY SSF56219 484 827 6.67E-35 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_2732 b55a620ac31316484fd31b7d80bfad54 176 Pfam PF11066 Protein of unknown function (DUF2867) 22 167 4.9E-41 T 11-10-2018 IPR021295 Protein of unknown function DUF2867 dqs_2301 fca5bfdea798199f880fac37d159d092 277 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 6 276 75.169 T 11-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein dqs_2301 fca5bfdea798199f880fac37d159d092 277 Pfam PF03618 Kinase/pyrophosphorylase 9 267 1.9E-78 T 11-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 dqs_3009 4e783f13ab54c4554b99335dd22c51c7 189 Pfam PF04264 YceI-like domain 30 186 4.6E-31 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like dqs_3009 4e783f13ab54c4554b99335dd22c51c7 189 SUPERFAMILY SSF101874 29 187 2.09E-38 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily dqs_3009 4e783f13ab54c4554b99335dd22c51c7 189 SMART SM00867 26 187 1.4E-44 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like dqs_3009 4e783f13ab54c4554b99335dd22c51c7 189 Gene3D G3DSA:2.40.128.110 29 189 6.4E-38 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 SUPERFAMILY SSF52518 346 534 1.09E-69 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 Gene3D G3DSA:3.40.50.970 14 334 4.3E-129 T 11-10-2018 dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 17 340 4.8E-163 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 Pfam PF02780 Transketolase, C-terminal domain 560 664 3.0E-15 T 11-10-2018 IPR033248 Transketolase, C-terminal domain dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 ProSitePatterns PS00802 Transketolase signature 2. 476 492 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 ProSitePatterns PS00801 Transketolase signature 1. 20 40 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 TIGRFAM TIGR00232 tktlase_bact: transketolase 17 672 2.3E-293 T 11-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 SUPERFAMILY SSF52518 14 329 7.23E-120 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 SUPERFAMILY SSF52922 542 672 6.94E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 SMART SM00861 364 534 2.5E-71 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 Gene3D G3DSA:3.40.50.970 335 546 2.3E-83 T 11-10-2018 dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 Pfam PF02779 Transketolase, pyrimidine binding domain 363 533 6.3E-47 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain dqs_2975 f03c999f317293a67eb490d8ce74ccbd 673 Gene3D G3DSA:3.40.50.920 547 671 3.9E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 dqs_2853 9eae229fb24a168d6cfd536f334f66b6 248 Pfam PF02108 Flagellar assembly protein FliH 109 233 1.8E-36 T 11-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE dqs_2853 9eae229fb24a168d6cfd536f334f66b6 248 PRINTS PR01003 Flagellar assembly protein FliH signature 131 148 8.8E-18 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 dqs_2853 9eae229fb24a168d6cfd536f334f66b6 248 PRINTS PR01003 Flagellar assembly protein FliH signature 198 214 8.8E-18 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 dqs_2853 9eae229fb24a168d6cfd536f334f66b6 248 PRINTS PR01003 Flagellar assembly protein FliH signature 111 130 8.8E-18 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 dqs_2853 9eae229fb24a168d6cfd536f334f66b6 248 PRINTS PR01003 Flagellar assembly protein FliH signature 170 197 8.8E-18 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 dqs_2853 9eae229fb24a168d6cfd536f334f66b6 248 PRINTS PR01003 Flagellar assembly protein FliH signature 69 91 8.8E-18 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 dqs_2853 9eae229fb24a168d6cfd536f334f66b6 248 PRINTS PR01003 Flagellar assembly protein FliH signature 215 240 8.8E-18 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 dqs_2853 9eae229fb24a168d6cfd536f334f66b6 248 SUPERFAMILY SSF160527 155 237 2.48E-6 T 11-10-2018 dqs_2164 96aa1837b0de997038e99104e92289f2 152 Gene3D G3DSA:3.40.50.2300 2 148 5.9E-32 T 11-10-2018 dqs_2164 96aa1837b0de997038e99104e92289f2 152 SUPERFAMILY SSF52172 5 133 3.42E-31 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2164 96aa1837b0de997038e99104e92289f2 152 SMART SM00448 5 130 2.1E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2164 96aa1837b0de997038e99104e92289f2 152 Pfam PF00072 Response regulator receiver domain 7 128 7.3E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1489 95156e18cf10c922e065f5c288351799 445 Gene3D G3DSA:1.10.3710.10 338 438 1.7E-35 T 11-10-2018 dqs_1489 95156e18cf10c922e065f5c288351799 445 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 52 158 7.1E-14 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_1489 95156e18cf10c922e065f5c288351799 445 Gene3D G3DSA:1.20.272.10 234 337 6.8E-40 T 11-10-2018 dqs_1489 95156e18cf10c922e065f5c288351799 445 SUPERFAMILY SSF48019 244 426 3.97E-71 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 dqs_1489 95156e18cf10c922e065f5c288351799 445 SMART SM00382 48 164 2.4E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1489 95156e18cf10c922e065f5c288351799 445 Gene3D G3DSA:3.40.50.300 4 162 4.7E-43 T 11-10-2018 dqs_1489 95156e18cf10c922e065f5c288351799 445 SUPERFAMILY SSF52540 9 227 7.53E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1489 95156e18cf10c922e065f5c288351799 445 Pfam PF16193 AAA C-terminal domain 184 259 3.0E-20 T 11-10-2018 IPR032423 AAA C-terminal domain dqs_1489 95156e18cf10c922e065f5c288351799 445 Pfam PF12002 MgsA AAA+ ATPase C terminal 260 426 2.2E-64 T 11-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 Pfam PF13654 AAA domain 26 538 2.8E-179 T 11-10-2018 dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 SUPERFAMILY SSF54211 563 756 1.56E-35 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 Gene3D G3DSA:1.10.8.60 449 535 2.9E-8 T 11-10-2018 dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 SUPERFAMILY SSF52540 36 538 2.92E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 Gene3D G3DSA:3.40.50.300 236 448 1.0E-62 T 11-10-2018 dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 Gene3D G3DSA:3.40.50.300 6 160 2.9E-27 T 11-10-2018 dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 Gene3D G3DSA:3.30.230.10 541 773 1.7E-94 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 645 752 2.9E-9 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 645 664 4.7E-9 T 11-10-2018 dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 564 580 4.7E-9 T 11-10-2018 dqs_1732 c8a10fe3654f657a311472c26c8505d8 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 675 694 4.7E-9 T 11-10-2018 dqs_2840 f064a5e17f6164965de4cf2fd4a62e96 134 SUPERFAMILY SSF160214 40 134 3.92E-26 T 11-10-2018 IPR035924 FlaG-like superfamily dqs_2840 f064a5e17f6164965de4cf2fd4a62e96 134 Pfam PF03646 FlaG protein 37 131 3.5E-26 T 11-10-2018 IPR005186 FlaG protein dqs_2840 f064a5e17f6164965de4cf2fd4a62e96 134 Gene3D G3DSA:3.30.160.170 35 130 8.5E-18 T 11-10-2018 IPR035924 FlaG-like superfamily dqs_0031 a73b8df80f88df77fd789fb55d49dd14 152 Gene3D G3DSA:3.10.20.30 1 75 4.9E-28 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_0031 a73b8df80f88df77fd789fb55d49dd14 152 Pfam PF01799 [2Fe-2S] binding domain 72 144 1.3E-25 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 dqs_0031 a73b8df80f88df77fd789fb55d49dd14 152 SUPERFAMILY SSF47741 83 150 9.16E-30 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily dqs_0031 a73b8df80f88df77fd789fb55d49dd14 152 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_0031 a73b8df80f88df77fd789fb55d49dd14 152 SUPERFAMILY SSF54292 2 77 6.82E-26 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_0031 a73b8df80f88df77fd789fb55d49dd14 152 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 61 4.6E-8 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_0031 a73b8df80f88df77fd789fb55d49dd14 152 Gene3D G3DSA:1.10.150.120 78 152 9.6E-25 T 11-10-2018 dqs_0727 1624614e4bc7996510b5342997b92650 543 Pfam PF14351 Domain of unknown function (DUF4401) 32 366 2.3E-55 T 11-10-2018 IPR025513 Domain of unknown function DUF4401 dqs_0727 1624614e4bc7996510b5342997b92650 543 Pfam PF14345 GDYXXLXY protein 397 535 2.3E-31 T 11-10-2018 IPR025833 GDYXXLXY protein dqs_1259 1e3125dcd6f46cc0d661d60b94eab389 97 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 20 95 5.8E-23 T 11-10-2018 IPR019886 Sodium symporter small subunit, predicted dqs_1259 1e3125dcd6f46cc0d661d60b94eab389 97 Pfam PF13937 Domain of unknown function (DUF4212) 18 93 9.0E-24 T 11-10-2018 IPR019886 Sodium symporter small subunit, predicted dqs_0948 28e1ec00a6d605e39e4d481c825dfd4a 87 Pfam PF04999 Cell division protein FtsL 6 84 1.7E-26 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 dqs_0948 28e1ec00a6d605e39e4d481c825dfd4a 87 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 6 83 6.8E-24 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 dqs_0948 28e1ec00a6d605e39e4d481c825dfd4a 87 Hamap MF_00910 Cell division protein FtsL [ftsL]. 1 84 17.763 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 dqs_2183 5b6a23b272d5b243f098aa98212814dd 220 SUPERFAMILY SSF56281 2 220 1.82E-57 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_2183 5b6a23b272d5b243f098aa98212814dd 220 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 1 220 2.7E-83 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 dqs_2183 5b6a23b272d5b243f098aa98212814dd 220 Gene3D G3DSA:3.60.15.10 1 220 8.7E-71 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_2183 5b6a23b272d5b243f098aa98212814dd 220 PIRSF PIRSF005457 1 220 1.6E-81 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 dqs_2183 5b6a23b272d5b243f098aa98212814dd 220 Pfam PF00753 Metallo-beta-lactamase superfamily 8 132 2.2E-15 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_2183 5b6a23b272d5b243f098aa98212814dd 220 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 220 32.151 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 dqs_2183 5b6a23b272d5b243f098aa98212814dd 220 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 133 220 3.5E-24 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 dqs_2183 5b6a23b272d5b243f098aa98212814dd 220 SMART SM00849 6 132 1.0E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_2218 dab429899c9973a40cfd43f260d66c1a 158 Gene3D G3DSA:3.30.700.10 8 89 1.5E-12 T 11-10-2018 dqs_2218 dab429899c9973a40cfd43f260d66c1a 158 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2218 dab429899c9973a40cfd43f260d66c1a 158 PRINTS PR00813 Bacterial general secretion pathway protein G signature 7 32 3.5E-7 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 dqs_2218 dab429899c9973a40cfd43f260d66c1a 158 PRINTS PR00813 Bacterial general secretion pathway protein G signature 43 61 3.5E-7 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 dqs_2218 dab429899c9973a40cfd43f260d66c1a 158 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 2.4E-6 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2218 dab429899c9973a40cfd43f260d66c1a 158 SUPERFAMILY SSF54523 8 141 2.88E-18 T 11-10-2018 dqs_2218 dab429899c9973a40cfd43f260d66c1a 158 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 27 5.4E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_1337 4d0df42437f8aa4a3d747b7faa757050 118 Pfam PF02406 MmoB/DmpM family 24 107 1.3E-26 T 11-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 dqs_1337 4d0df42437f8aa4a3d747b7faa757050 118 Gene3D G3DSA:3.90.56.10 22 109 5.3E-13 T 11-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 dqs_1337 4d0df42437f8aa4a3d747b7faa757050 118 SUPERFAMILY SSF56029 4 117 6.67E-35 T 11-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 dqs_4071 d65c129566db782c7b8e69e5fb498f35 419 SMART SM00028 164 197 0.06 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4071 d65c129566db782c7b8e69e5fb498f35 419 SMART SM00028 234 267 150.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_4071 d65c129566db782c7b8e69e5fb498f35 419 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 7 127 2.6E-22 T 11-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI dqs_4071 d65c129566db782c7b8e69e5fb498f35 419 SUPERFAMILY SSF48452 153 261 8.07E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_4071 d65c129566db782c7b8e69e5fb498f35 419 Gene3D G3DSA:1.25.40.10 148 285 7.2E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_4071 d65c129566db782c7b8e69e5fb498f35 419 Pfam PF13432 Tetratricopeptide repeat 219 268 3.2E-5 T 11-10-2018 dqs_4071 d65c129566db782c7b8e69e5fb498f35 419 Pfam PF13432 Tetratricopeptide repeat 161 198 1.1E-4 T 11-10-2018 dqs_1300 9c39a0ca6ad9bd768be2636f2841dc84 86 Gene3D G3DSA:1.10.260.40 1 81 5.3E-14 T 11-10-2018 dqs_1300 9c39a0ca6ad9bd768be2636f2841dc84 86 SUPERFAMILY SSF47413 7 73 5.36E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_1300 9c39a0ca6ad9bd768be2636f2841dc84 86 SMART SM00530 15 70 6.8E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_1300 9c39a0ca6ad9bd768be2636f2841dc84 86 Pfam PF01381 Helix-turn-helix 19 67 4.7E-11 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_1991 341cb3d8113a8a5e5813fd9b134e5936 491 SUPERFAMILY SSF58104 118 382 1.05E-55 T 11-10-2018 dqs_1991 341cb3d8113a8a5e5813fd9b134e5936 491 SMART SM00283 112 373 9.8E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1991 341cb3d8113a8a5e5813fd9b134e5936 491 Gene3D G3DSA:1.10.287.950 95 384 1.1E-49 T 11-10-2018 dqs_1991 341cb3d8113a8a5e5813fd9b134e5936 491 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 158 339 1.4E-36 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_3465 152a0f3ff53096b00502c99f13c5869a 233 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 133 155 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 dqs_3465 152a0f3ff53096b00502c99f13c5869a 233 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 4 207 4.2E-92 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 dqs_3465 152a0f3ff53096b00502c99f13c5869a 233 Pfam PF00834 Ribulose-phosphate 3 epimerase family 4 204 4.6E-90 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 dqs_3465 152a0f3ff53096b00502c99f13c5869a 233 SUPERFAMILY SSF51366 1 208 4.78E-69 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 dqs_3465 152a0f3ff53096b00502c99f13c5869a 233 PIRSF PIRSF001461 1 229 5.1E-98 T 11-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 dqs_3465 152a0f3ff53096b00502c99f13c5869a 233 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 dqs_3465 152a0f3ff53096b00502c99f13c5869a 233 Gene3D G3DSA:3.20.20.70 1 216 2.4E-77 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 2.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 2.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 5.8E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 5.8E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 5.8E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 Pfam PF00106 short chain dehydrogenase 7 202 9.1E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 192 0.0053 T 11-10-2018 dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 Gene3D G3DSA:3.40.50.720 1 253 9.6E-76 T 11-10-2018 dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 SUPERFAMILY SSF51735 5 248 7.41E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2649 54496445e2cab24a9fbba5e21b0d35c1 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_1546 fb965987f27e5abbc52e7cea716ad44a 434 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 425 2.4E-134 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_1546 fb965987f27e5abbc52e7cea716ad44a 434 SUPERFAMILY SSF53383 8 425 1.79E-123 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_1546 fb965987f27e5abbc52e7cea716ad44a 434 Gene3D G3DSA:3.90.1150.10 294 434 3.4E-51 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_1546 fb965987f27e5abbc52e7cea716ad44a 434 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_1546 fb965987f27e5abbc52e7cea716ad44a 434 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 10 425 1.6E-172 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 dqs_1546 fb965987f27e5abbc52e7cea716ad44a 434 Gene3D G3DSA:3.40.640.10 9 290 7.6E-98 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_1546 fb965987f27e5abbc52e7cea716ad44a 434 PIRSF PIRSF001434 1 429 1.3E-129 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 dqs_2955 ed798e2e5eecd0cd236c71990ab909bd 230 Gene3D G3DSA:3.40.50.2020 114 228 7.8E-19 T 11-10-2018 dqs_2955 ed798e2e5eecd0cd236c71990ab909bd 230 Pfam PF00156 Phosphoribosyl transferase domain 134 225 3.9E-12 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 dqs_2955 ed798e2e5eecd0cd236c71990ab909bd 230 SUPERFAMILY SSF53271 57 227 5.11E-34 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like dqs_3252 3377c36bb099a6946737af85b71f41fc 469 Gene3D G3DSA:3.30.70.100 334 424 1.2E-21 T 11-10-2018 dqs_3252 3377c36bb099a6946737af85b71f41fc 469 SUPERFAMILY SSF82861 178 261 2.48E-10 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 dqs_3252 3377c36bb099a6946737af85b71f41fc 469 SUPERFAMILY SSF82689 337 429 5.23E-26 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 dqs_3252 3377c36bb099a6946737af85b71f41fc 469 Gene3D G3DSA:2.30.30.60 279 326 9.4E-8 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily dqs_3252 3377c36bb099a6946737af85b71f41fc 469 Pfam PF00924 Mechanosensitive ion channel 221 420 1.1E-45 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 dqs_3252 3377c36bb099a6946737af85b71f41fc 469 SUPERFAMILY SSF50182 263 327 8.17E-14 T 11-10-2018 IPR010920 LSM domain superfamily dqs_0802 01486332bba956531f70955a1a6db980 315 Pfam PF00293 NUDIX domain 9 115 2.1E-18 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 dqs_0802 01486332bba956531f70955a1a6db980 315 Gene3D G3DSA:3.90.79.10 1 133 1.3E-36 T 11-10-2018 dqs_0802 01486332bba956531f70955a1a6db980 315 PRINTS PR00502 NUDIX hydrolase family signature 35 49 1.9E-7 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 dqs_0802 01486332bba956531f70955a1a6db980 315 PRINTS PR00502 NUDIX hydrolase family signature 49 64 1.9E-7 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 dqs_0802 01486332bba956531f70955a1a6db980 315 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 dqs_0802 01486332bba956531f70955a1a6db980 315 Gene3D G3DSA:3.20.20.70 134 315 1.5E-44 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0802 01486332bba956531f70955a1a6db980 315 SUPERFAMILY SSF55811 4 129 9.07E-33 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_0802 01486332bba956531f70955a1a6db980 315 SUPERFAMILY SSF51391 118 315 6.28E-47 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 dqs_0802 01486332bba956531f70955a1a6db980 315 Pfam PF02581 Thiamine monophosphate synthase 138 311 2.2E-38 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 200 436 1.2E-11 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 Gene3D G3DSA:2.102.10.10 43 174 6.1E-100 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 Pfam PF00355 Rieske [2Fe-2S] domain 45 129 4.5E-19 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 SUPERFAMILY SSF50022 14 164 3.27E-43 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 81 101 2.7E-35 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 191 213 2.7E-35 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 149 175 2.7E-35 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 30 55 2.7E-35 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 60 75 2.7E-35 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 103 123 2.7E-35 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 SUPERFAMILY SSF55961 166 439 5.42E-56 T 11-10-2018 dqs_2138 f615684f4796218964cbf13d19cff9c3 440 Gene3D G3DSA:3.90.380.10 23 436 6.1E-100 T 11-10-2018 dqs_0253 59cfa5ef3537cea2cd649cd3f71144bc 425 SUPERFAMILY SSF46626 241 334 7.13E-8 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_0253 59cfa5ef3537cea2cd649cd3f71144bc 425 Pfam PF12773 Double zinc ribbon 3 53 2.5E-10 T 11-10-2018 IPR025874 Double zinc ribbon dqs_0253 59cfa5ef3537cea2cd649cd3f71144bc 425 Gene3D G3DSA:1.10.760.10 249 334 1.8E-10 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_0482 96d922e98b188b54f84bb9c2aef846d4 261 Pfam PF02698 DUF218 domain 86 253 1.8E-24 T 11-10-2018 IPR003848 Domain of unknown function DUF218 dqs_3843 25bed3dce332722326d0f24e4dd5bee6 182 Gene3D G3DSA:2.60.40.1190 25 174 4.1E-6 T 11-10-2018 dqs_0544 282e8eedc9560a6a8330b88a35fffed5 376 SUPERFAMILY SSF81901 33 175 4.19E-29 T 11-10-2018 dqs_0544 282e8eedc9560a6a8330b88a35fffed5 376 Gene3D G3DSA:1.25.40.10 12 183 1.4E-37 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_0544 282e8eedc9560a6a8330b88a35fffed5 376 Pfam PF08238 Sel1 repeat 61 95 9.4E-6 T 11-10-2018 IPR006597 Sel1-like repeat dqs_0544 282e8eedc9560a6a8330b88a35fffed5 376 Pfam PF08238 Sel1 repeat 132 167 1.1E-4 T 11-10-2018 IPR006597 Sel1-like repeat dqs_0544 282e8eedc9560a6a8330b88a35fffed5 376 Pfam PF08238 Sel1 repeat 96 121 1.8E-4 T 11-10-2018 IPR006597 Sel1-like repeat dqs_0544 282e8eedc9560a6a8330b88a35fffed5 376 SMART SM00671 60 95 2.5E-9 T 11-10-2018 IPR006597 Sel1-like repeat dqs_0544 282e8eedc9560a6a8330b88a35fffed5 376 SMART SM00671 132 167 9.0E-7 T 11-10-2018 IPR006597 Sel1-like repeat dqs_0544 282e8eedc9560a6a8330b88a35fffed5 376 SMART SM00671 96 131 1.4E-6 T 11-10-2018 IPR006597 Sel1-like repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 SUPERFAMILY SSF50998 34 542 1.31E-139 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 Gene3D G3DSA:2.140.10.10 31 555 1.1E-163 T 11-10-2018 dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 Pfam PF01011 PQQ enzyme repeat 474 510 6.3E-10 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 SMART SM00564 179 217 0.025 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 SMART SM00564 82 114 0.39 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 SMART SM00564 400 459 290.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 SMART SM00564 468 500 9.1E-8 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 SMART SM00564 244 292 19.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 SMART SM00564 132 164 5.3E-6 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 Pfam PF13360 PQQ-like domain 199 345 9.2E-5 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_4009 51d24d00a81209a7857678fc2cedaf9a 556 Pfam PF13360 PQQ-like domain 77 188 3.6E-14 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat dqs_2098 5023e200d336687de72a1f21edd7dab3 172 Gene3D G3DSA:2.30.110.10 4 170 4.0E-46 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_2098 5023e200d336687de72a1f21edd7dab3 172 Pfam PF01613 Flavin reductase like domain 19 166 2.7E-36 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_2098 5023e200d336687de72a1f21edd7dab3 172 SUPERFAMILY SSF50475 11 166 4.22E-46 T 11-10-2018 dqs_2098 5023e200d336687de72a1f21edd7dab3 172 SMART SM00903 19 165 1.7E-50 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_0305 2aa748e563a44ecdf7f8f822f8e91da4 384 Gene3D G3DSA:3.40.47.10 231 383 1.2E-33 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0305 2aa748e563a44ecdf7f8f822f8e91da4 384 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 289 366 3.8E-14 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 dqs_0305 2aa748e563a44ecdf7f8f822f8e91da4 384 SUPERFAMILY SSF53901 4 375 4.29E-29 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0305 2aa748e563a44ecdf7f8f822f8e91da4 384 Gene3D G3DSA:3.40.47.10 6 209 6.2E-38 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_0839 abda35d22f411082fefb7186c960c1ce 450 Pfam PF00675 Insulinase (Peptidase family M16) 44 188 1.5E-9 T 11-10-2018 IPR011765 Peptidase M16, N-terminal dqs_0839 abda35d22f411082fefb7186c960c1ce 450 Pfam PF05193 Peptidase M16 inactive domain 198 373 4.4E-33 T 11-10-2018 IPR007863 Peptidase M16, C-terminal dqs_0839 abda35d22f411082fefb7186c960c1ce 450 SUPERFAMILY SSF63411 248 444 1.83E-45 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 dqs_0839 abda35d22f411082fefb7186c960c1ce 450 Gene3D G3DSA:3.30.830.10 248 442 3.6E-53 T 11-10-2018 dqs_0839 abda35d22f411082fefb7186c960c1ce 450 Gene3D G3DSA:3.30.830.10 35 244 1.3E-45 T 11-10-2018 dqs_0839 abda35d22f411082fefb7186c960c1ce 450 SUPERFAMILY SSF63411 29 252 4.54E-41 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 dqs_2294 996dc39571d9dddc338df0dda5bee724 348 Pfam PF00535 Glycosyl transferase family 2 23 183 4.8E-29 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_2294 996dc39571d9dddc338df0dda5bee724 348 Gene3D G3DSA:3.90.550.10 16 253 1.3E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2294 996dc39571d9dddc338df0dda5bee724 348 SUPERFAMILY SSF53448 18 275 1.83E-44 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0665 3e8b782a681d7eed6456ae57be6c006f 167 SUPERFAMILY SSF46785 93 142 6.04E-6 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 SUPERFAMILY SSF82649 2 131 7.33E-43 T 11-10-2018 dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 225 283 2.0E-19 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 Gene3D G3DSA:3.90.1010.10 1 135 9.2E-54 T 11-10-2018 dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 Pfam PF01592 NifU-like N terminal domain 4 125 1.1E-48 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 Pfam PF01106 NifU-like domain 217 280 9.7E-20 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 Gene3D G3DSA:1.10.10.1100 136 190 1.7E-6 T 11-10-2018 dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 Pfam PF04324 BFD-like [2Fe-2S] binding domain 135 184 2.9E-16 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 TIGRFAM TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU 1 283 2.5E-140 T 11-10-2018 IPR010238 NIF system FeS cluster assembly, NifU GO:0005506|GO:0016226|GO:0051536 dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 Gene3D G3DSA:3.30.300.130 211 287 4.7E-18 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 SUPERFAMILY SSF117916 208 284 3.71E-19 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily dqs_0563 9fe6226e6c5be11a86bae4d9484bea95 296 PIRSF PIRSF000375 1 284 9.8E-128 T 11-10-2018 IPR016217 Nitrogen fixation, NifU dqs_3282 3a51eaec4181645178a66b8ccebcc3cb 163 Pfam PF06271 RDD family 25 151 5.8E-23 T 11-10-2018 IPR010432 RDD dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 SUPERFAMILY SSF51735 1 236 1.43E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 Gene3D G3DSA:3.40.50.720 5 236 3.1E-73 T 11-10-2018 dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2595 06f65488c55eaa15e0fe8991fc2a6daa 236 Pfam PF00106 short chain dehydrogenase 6 197 2.2E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1782 719cdc0eec9efc74e59f5a131219f8f3 165 Pfam PF02586 SOS response associated peptidase (SRAP) 2 154 7.6E-25 T 11-10-2018 IPR003738 SOS response associated peptidase (SRAP) dqs_1782 719cdc0eec9efc74e59f5a131219f8f3 165 SUPERFAMILY SSF143081 1 154 6.02E-47 T 11-10-2018 IPR036590 SOS response associated peptidase-like dqs_1782 719cdc0eec9efc74e59f5a131219f8f3 165 Gene3D G3DSA:3.90.1680.10 1 158 1.0E-57 T 11-10-2018 IPR036590 SOS response associated peptidase-like dqs_0771 abb77f79fa2297df56bd153eafbeb29f 443 Pfam PF06123 Inner membrane protein CreD 5 432 1.7E-144 T 11-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD dqs_0771 abb77f79fa2297df56bd153eafbeb29f 443 PIRSF PIRSF004548 1 442 3.1E-137 T 11-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD dqs_3038 9903d99aea5087e37f79e37a26fb4d4e 83 Gene3D G3DSA:3.30.1320.10 1 82 4.0E-30 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3038 9903d99aea5087e37f79e37a26fb4d4e 83 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 4.9E-27 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3038 9903d99aea5087e37f79e37a26fb4d4e 83 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 11-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 dqs_3038 9903d99aea5087e37f79e37a26fb4d4e 83 Pfam PF00886 Ribosomal protein S16 8 68 4.7E-23 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3038 9903d99aea5087e37f79e37a26fb4d4e 83 SUPERFAMILY SSF54565 1 77 1.44E-28 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3038 9903d99aea5087e37f79e37a26fb4d4e 83 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.289 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_4076 6f5477d1bc2ebaa5b73b105a976ed66a 73 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 54 2.0E-11 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 dqs_4076 6f5477d1bc2ebaa5b73b105a976ed66a 73 Pfam PF04995 Heme exporter protein D (CcmD) 16 50 1.4E-7 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 dqs_3003 49810ed6210a17c5764ee4672d87ec23 339 Pfam PF07584 Aerotolerance regulator N-terminal 1 75 3.8E-9 T 11-10-2018 IPR024163 Aerotolerance regulator, N-terminal dqs_3003 49810ed6210a17c5764ee4672d87ec23 339 Pfam PF13519 von Willebrand factor type A domain 88 221 2.3E-16 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_3003 49810ed6210a17c5764ee4672d87ec23 339 SMART SM00327 85 300 3.0E-18 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_3003 49810ed6210a17c5764ee4672d87ec23 339 SUPERFAMILY SSF53300 82 299 7.23E-31 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_3003 49810ed6210a17c5764ee4672d87ec23 339 Gene3D G3DSA:3.40.50.410 80 302 5.2E-47 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_3952 0eaa7659337c4ee519e7cdc0a1f8b48d 307 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 111 272 1.0E-34 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain dqs_3952 0eaa7659337c4ee519e7cdc0a1f8b48d 307 SUPERFAMILY SSF52540 88 295 1.7E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3952 0eaa7659337c4ee519e7cdc0a1f8b48d 307 PIRSF PIRSF005624 74 305 1.6E-94 T 11-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 dqs_3952 0eaa7659337c4ee519e7cdc0a1f8b48d 307 Gene3D G3DSA:3.40.50.300 90 297 1.2E-60 T 11-10-2018 dqs_3952 0eaa7659337c4ee519e7cdc0a1f8b48d 307 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 82 290 4.0E-87 T 11-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 dqs_2082 7c5da5787ec686ce477c1188b2d31afb 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 263 5.8E-76 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_2082 7c5da5787ec686ce477c1188b2d31afb 264 Gene3D G3DSA:1.10.12.10 207 264 1.8E-22 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_2082 7c5da5787ec686ce477c1188b2d31afb 264 Gene3D G3DSA:3.90.226.10 11 206 4.4E-68 T 11-10-2018 dqs_2082 7c5da5787ec686ce477c1188b2d31afb 264 SUPERFAMILY SSF52096 13 264 2.73E-84 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_3158 dbbbb8bc7b12e825487cf06bb2c4c81c 705 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 168 3.7E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_3158 dbbbb8bc7b12e825487cf06bb2c4c81c 705 Gene3D G3DSA:2.40.170.20 189 703 3.6E-92 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_3158 dbbbb8bc7b12e825487cf06bb2c4c81c 705 SUPERFAMILY SSF56935 32 703 5.49E-114 T 11-10-2018 dqs_3158 dbbbb8bc7b12e825487cf06bb2c4c81c 705 Gene3D G3DSA:2.170.130.10 45 171 1.0E-19 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_3158 dbbbb8bc7b12e825487cf06bb2c4c81c 705 Pfam PF00593 TonB dependent receptor 268 702 1.7E-49 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 466 21.007 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 502 1.1E-157 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 PIRSF PIRSF002869 1 511 8.4E-175 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 PRINTS PR01806 Virulence factor MviN signature 133 157 4.0E-85 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 PRINTS PR01806 Virulence factor MviN signature 259 285 4.0E-85 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 PRINTS PR01806 Virulence factor MviN signature 33 52 4.0E-85 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 PRINTS PR01806 Virulence factor MviN signature 357 376 4.0E-85 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 PRINTS PR01806 Virulence factor MviN signature 52 68 4.0E-85 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 PRINTS PR01806 Virulence factor MviN signature 157 178 4.0E-85 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 PRINTS PR01806 Virulence factor MviN signature 409 426 4.0E-85 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2324 7d5fa6ea492d05a7f20d297ae81cf5e9 512 Pfam PF03023 MviN-like protein 28 463 2.9E-149 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 Pfam PF14842 FliG N-terminal domain 6 103 6.6E-23 T 11-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 PIRSF PIRSF003161 2 332 1.4E-113 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 SUPERFAMILY SSF48029 114 323 7.98E-69 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 Gene3D G3DSA:1.10.220.30 3 83 8.2E-14 T 11-10-2018 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 SUPERFAMILY SSF48029 4 113 5.49E-19 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 7 329 3.9E-105 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 Gene3D G3DSA:1.10.220.30 193 331 2.4E-46 T 11-10-2018 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 Pfam PF14841 FliG middle domain 117 185 1.2E-26 T 11-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 112 135 1.1E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 1.1E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 1.1E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 1.1E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 4 20 1.1E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 33 59 1.1E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 1.1E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 Gene3D G3DSA:1.10.220.30 87 189 2.3E-28 T 11-10-2018 dqs_2852 7fcd2e8cbf36db4424928533e93321dd 332 Pfam PF01706 FliG C-terminal domain 216 322 2.6E-42 T 11-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal dqs_3973 0fdfa97c0ac2246493c52b1154208d83 325 Gene3D G3DSA:3.20.20.70 8 316 2.5E-69 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3973 0fdfa97c0ac2246493c52b1154208d83 325 Pfam PF03060 Nitronate monooxygenase 86 307 4.4E-23 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 dqs_3973 0fdfa97c0ac2246493c52b1154208d83 325 SUPERFAMILY SSF51412 10 307 1.4E-52 T 11-10-2018 dqs_2130 d2498ca0c6a11a85416fda6b1521c520 317 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 6 308 5.0E-51 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 dqs_2130 d2498ca0c6a11a85416fda6b1521c520 317 SUPERFAMILY SSF53213 5 310 2.75E-64 T 11-10-2018 dqs_2130 d2498ca0c6a11a85416fda6b1521c520 317 Hamap MF_01653 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase [mhpB]. 1 315 54.394 T 11-10-2018 IPR023789 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase GO:0005506|GO:0019439|GO:0047070|GO:0055114 KEGG: 00360+1.13.11.16|MetaCyc: PWY-6690 dqs_1995 c6a093021b9acfc1514ca8c4e71e74bf 86 PIRSF PIRSF000039 2 86 8.5E-28 T 11-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 dqs_1995 c6a093021b9acfc1514ca8c4e71e74bf 86 ProDom PD468738 PHENOL HYDROXYLASE COMPONENT SUBUNIT PHENOLHYDROXYLASE MONOOXYGENASE TOMA0 P0 HYDROCARBONS IRON 4 51 1.0E-13 T 11-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 dqs_1995 c6a093021b9acfc1514ca8c4e71e74bf 86 Pfam PF06099 Phenol hydroxylase subunit 6 60 1.5E-30 T 11-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 dqs_1387 e2aa8d55f29facb27093c470ae5b9900 313 Pfam PF02470 MlaD protein 43 114 1.0E-13 T 11-10-2018 IPR003399 Mce/MlaD dqs_3147 4c687e19fd06de8680abab11c8dc5965 302 SUPERFAMILY SSF56235 2 301 1.12E-42 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3147 4c687e19fd06de8680abab11c8dc5965 302 Pfam PF13522 Glutamine amidotransferase domain 145 274 1.1E-15 T 11-10-2018 dqs_2741 92700e58b352c4ccf73cd5d8a45d740e 294 Pfam PF01513 ATP-NAD kinase 52 269 4.6E-58 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 dqs_2741 92700e58b352c4ccf73cd5d8a45d740e 294 Gene3D G3DSA:3.40.50.10330 26 287 1.9E-90 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 dqs_2741 92700e58b352c4ccf73cd5d8a45d740e 294 SUPERFAMILY SSF111331 7 288 3.27E-87 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily dqs_2741 92700e58b352c4ccf73cd5d8a45d740e 294 Gene3D G3DSA:2.60.200.30 129 264 1.9E-90 T 11-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 dqs_2741 92700e58b352c4ccf73cd5d8a45d740e 294 Hamap MF_00361 NAD kinase [nadK]. 6 287 33.563 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 dqs_0659 70ee23b2f8f4949d3a4c0a1cbf6f48ce 261 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 2 251 9.8E-35 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 dqs_0659 70ee23b2f8f4949d3a4c0a1cbf6f48ce 261 PIRSF PIRSF026649 1 260 5.5E-67 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 dqs_3875 9af52ced6c37fab0527a31c6a533a4c7 102 Gene3D G3DSA:1.10.150.130 11 98 4.2E-31 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal dqs_3875 9af52ced6c37fab0527a31c6a533a4c7 102 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 13 96 1.1E-24 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 dqs_3875 9af52ced6c37fab0527a31c6a533a4c7 102 SUPERFAMILY SSF56349 14 93 3.41E-5 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 dqs_3767 f95fd47c1923c9387afc498e487b19cf 284 Gene3D G3DSA:3.40.50.1820 4 284 6.6E-97 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3767 f95fd47c1923c9387afc498e487b19cf 284 Pfam PF00756 Putative esterase 24 276 7.8E-65 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 dqs_3767 f95fd47c1923c9387afc498e487b19cf 284 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 282 1.1E-128 T 11-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 dqs_3767 f95fd47c1923c9387afc498e487b19cf 284 SUPERFAMILY SSF53474 4 282 1.13E-94 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2247 fefb595e3d4e83f55cfa22d9ded15d3f 283 Pfam PF02811 PHP domain 9 108 4.6E-6 T 11-10-2018 IPR004013 PHP domain GO:0003824 dqs_2247 fefb595e3d4e83f55cfa22d9ded15d3f 283 SMART SM00481 8 73 6.7E-12 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal dqs_2247 fefb595e3d4e83f55cfa22d9ded15d3f 283 Gene3D G3DSA:3.20.20.140 8 254 1.7E-80 T 11-10-2018 dqs_2247 fefb595e3d4e83f55cfa22d9ded15d3f 283 Gene3D G3DSA:1.10.150.650 101 173 1.7E-80 T 11-10-2018 dqs_2247 fefb595e3d4e83f55cfa22d9ded15d3f 283 SUPERFAMILY SSF89550 7 262 1.1E-42 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 dqs_0311 8650cedf9b51fad1f38f9f4eeccafb0f 202 TIGRFAM TIGR02287 PaaY: phenylacetic acid degradation protein PaaY 3 193 2.8E-105 T 11-10-2018 IPR011974 Phenylacetic acid degradation protein PaaY dqs_0311 8650cedf9b51fad1f38f9f4eeccafb0f 202 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 41 2.0E-5 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_0311 8650cedf9b51fad1f38f9f4eeccafb0f 202 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 7.9E-8 T 11-10-2018 IPR001451 Hexapeptide repeat dqs_0311 8650cedf9b51fad1f38f9f4eeccafb0f 202 Gene3D G3DSA:2.160.10.10 1 172 1.5E-52 T 11-10-2018 dqs_0311 8650cedf9b51fad1f38f9f4eeccafb0f 202 SUPERFAMILY SSF51161 2 164 1.21E-44 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 PRINTS PR01021 OMPA domain signature 162 178 7.2E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 PRINTS PR01021 OMPA domain signature 117 139 7.2E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 PRINTS PR01021 OMPA domain signature 147 162 7.2E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 SUPERFAMILY SSF103088 105 217 3.01E-37 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 Pfam PF13488 Glycine zipper 34 84 5.5E-7 T 11-10-2018 IPR039567 Glycine zipper domain dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 Pfam PF00691 OmpA family 117 211 9.8E-20 T 11-10-2018 IPR006665 OmpA-like domain dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 180 199 5.2E-8 T 11-10-2018 dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 162 179 5.2E-8 T 11-10-2018 dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 200 220 5.2E-8 T 11-10-2018 dqs_0909 3d8e33eb7079eae0a94e02912d03d5e3 224 Gene3D G3DSA:3.30.1330.60 79 222 5.0E-43 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_2269 7dc0b5f09dc24302bcb939d490feea3f 281 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 272 7.5E-79 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 dqs_2269 7dc0b5f09dc24302bcb939d490feea3f 281 Gene3D G3DSA:3.40.50.150 1 280 1.6E-110 T 11-10-2018 dqs_2269 7dc0b5f09dc24302bcb939d490feea3f 281 SUPERFAMILY SSF53335 9 278 1.27E-93 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2269 7dc0b5f09dc24302bcb939d490feea3f 281 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 268 41.036 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 Gene3D G3DSA:3.50.50.60 5 289 3.2E-76 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 58 68 4.8E-27 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 166 4.8E-27 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 257 275 4.8E-27 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 4.8E-27 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 104 112 4.8E-27 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 127 139 4.8E-27 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 5.9E-21 T 11-10-2018 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 5.9E-21 T 11-10-2018 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 269 5.9E-21 T 11-10-2018 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.9E-21 T 11-10-2018 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 279 1.9E-23 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 SUPERFAMILY SSF51905 1 295 9.26E-34 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0463 01e5d741a503ba110357704ecdfe14e1 298 Gene3D G3DSA:3.50.50.60 117 228 3.2E-76 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3393 1b3121c36c8d23e60fc6c69487ccdeb1 490 Pfam PF13440 Polysaccharide biosynthesis protein 27 318 2.5E-52 T 11-10-2018 dqs_1869 06907ffaeca666b35230f8ceabe521c3 489 Pfam PF14063 Protein of unknown function (DUF4254) 51 193 1.2E-52 T 11-10-2018 IPR025350 Protein of unknown function DUF4254 dqs_1869 06907ffaeca666b35230f8ceabe521c3 489 SUPERFAMILY SSF53448 221 462 2.53E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1869 06907ffaeca666b35230f8ceabe521c3 489 Gene3D G3DSA:3.90.550.10 205 476 1.3E-22 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1869 06907ffaeca666b35230f8ceabe521c3 489 Pfam PF00535 Glycosyl transferase family 2 224 359 6.4E-15 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_4014 1ef0104415ddfc1ab94c340335243e4c 237 Gene3D G3DSA:3.30.559.10 2 236 1.3E-77 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 dqs_4014 1ef0104415ddfc1ab94c340335243e4c 237 SUPERFAMILY SSF52777 17 234 1.16E-70 T 11-10-2018 dqs_4014 1ef0104415ddfc1ab94c340335243e4c 237 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 17 234 2.0E-70 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 dqs_3516 4227b6528f521849b0c2b68d8f5f134a 130 Gene3D G3DSA:3.40.50.1400 8 128 2.2E-29 T 11-10-2018 dqs_3516 4227b6528f521849b0c2b68d8f5f134a 130 SUPERFAMILY SSF53800 11 127 3.79E-30 T 11-10-2018 dqs_3516 4227b6528f521849b0c2b68d8f5f134a 130 Pfam PF01903 CbiX 18 122 5.6E-26 T 11-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 dqs_3178 076f5fe288278abc813a114742aa0d91 141 Gene3D G3DSA:3.10.129.10 1 132 7.0E-35 T 11-10-2018 dqs_3178 076f5fe288278abc813a114742aa0d91 141 Pfam PF03061 Thioesterase superfamily 18 101 2.0E-10 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 dqs_3178 076f5fe288278abc813a114742aa0d91 141 SUPERFAMILY SSF54637 3 127 1.43E-36 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 SMART SM00530 36 91 9.8E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 Pfam PF01202 Shikimate kinase 145 298 4.6E-40 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 Gene3D G3DSA:3.40.50.300 128 303 2.3E-45 T 11-10-2018 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 PRINTS PR01100 Shikimate kinase family signature 191 199 2.2E-14 T 11-10-2018 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 PRINTS PR01100 Shikimate kinase family signature 139 154 2.2E-14 T 11-10-2018 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 PRINTS PR01100 Shikimate kinase family signature 210 219 2.2E-14 T 11-10-2018 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 PRINTS PR01100 Shikimate kinase family signature 163 176 2.2E-14 T 11-10-2018 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 ProSitePatterns PS01128 Shikimate kinase signature. 192 218 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 SUPERFAMILY SSF47413 28 97 1.61E-15 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 Gene3D G3DSA:1.10.260.40 14 100 2.5E-15 T 11-10-2018 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 SUPERFAMILY SSF52540 135 301 4.86E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 Hamap MF_00109 Shikimate kinase [aroK]. 136 303 23.633 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 dqs_3189 cc089cbdaf29be2cb54880592b87ef0b 304 Pfam PF01381 Helix-turn-helix 37 91 6.6E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 5 413 1.4E-129 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 414 30.269 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 SUPERFAMILY SSF51735 159 311 7.98E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 95 118 - T 11-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 Gene3D G3DSA:3.30.460.30 2 154 8.3E-57 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 SUPERFAMILY SSF69742 1 154 4.32E-48 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 SUPERFAMILY SSF69075 313 414 1.31E-30 T 11-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 316 413 1.1E-30 T 11-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 Gene3D G3DSA:3.40.50.720 158 308 4.3E-43 T 11-10-2018 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 PIRSF PIRSF000445 1 417 5.7E-152 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 152 1.1E-49 T 11-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 dqs_1081 46dddbd8e5375d05b81bdf24f70ca1b7 417 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 169 302 6.7E-42 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase dqs_1989 2268dbdeb99e78e7241348404469dc98 796 SUPERFAMILY SSF82866 585 793 3.53E-31 T 11-10-2018 dqs_1989 2268dbdeb99e78e7241348404469dc98 796 Gene3D G3DSA:1.20.1640.10 596 796 1.4E-10 T 11-10-2018 dqs_1989 2268dbdeb99e78e7241348404469dc98 796 SUPERFAMILY SSF82866 209 399 3.14E-25 T 11-10-2018 dqs_1989 2268dbdeb99e78e7241348404469dc98 796 Pfam PF03176 MMPL family 221 425 2.8E-5 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_1989 2268dbdeb99e78e7241348404469dc98 796 Pfam PF03176 MMPL family 594 788 7.9E-13 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 dqs_0379 e81fc771c6059fce00361c4d254c7e1b 77 SMART SM00530 13 68 1.0E-13 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_0379 e81fc771c6059fce00361c4d254c7e1b 77 SUPERFAMILY SSF47413 8 74 7.51E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_0379 e81fc771c6059fce00361c4d254c7e1b 77 Pfam PF01381 Helix-turn-helix 14 66 1.6E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_0379 e81fc771c6059fce00361c4d254c7e1b 77 Gene3D G3DSA:1.10.260.40 6 74 7.9E-20 T 11-10-2018 dqs_2946 374ef14ba7f2c48ff4d88e2324052bcf 444 Pfam PF01551 Peptidase family M23 343 437 5.6E-23 T 11-10-2018 IPR016047 Peptidase M23 dqs_2946 374ef14ba7f2c48ff4d88e2324052bcf 444 SUPERFAMILY SSF51261 296 440 1.67E-40 T 11-10-2018 IPR011055 Duplicated hybrid motif dqs_2946 374ef14ba7f2c48ff4d88e2324052bcf 444 Gene3D G3DSA:2.70.70.10 305 442 5.7E-31 T 11-10-2018 IPR011055 Duplicated hybrid motif dqs_2946 374ef14ba7f2c48ff4d88e2324052bcf 444 SUPERFAMILY SSF57997 31 127 2.09E-6 T 11-10-2018 dqs_1350 d138f0b4358961b5c79d502729fe3543 195 PRINTS PR00162 Rieske 2Fe-2S subunit signature 148 160 1.9E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 dqs_1350 d138f0b4358961b5c79d502729fe3543 195 PRINTS PR00162 Rieske 2Fe-2S subunit signature 116 127 1.9E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 dqs_1350 d138f0b4358961b5c79d502729fe3543 195 PRINTS PR00162 Rieske 2Fe-2S subunit signature 161 173 1.9E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 dqs_1350 d138f0b4358961b5c79d502729fe3543 195 Pfam PF00355 Rieske [2Fe-2S] domain 53 176 1.1E-10 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_1350 d138f0b4358961b5c79d502729fe3543 195 SUPERFAMILY SSF50022 27 186 1.45E-39 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1350 d138f0b4358961b5c79d502729fe3543 195 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 8 37 3.8E-8 T 11-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 dqs_1350 d138f0b4358961b5c79d502729fe3543 195 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 8 189 5.5E-63 T 11-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 dqs_1350 d138f0b4358961b5c79d502729fe3543 195 Gene3D G3DSA:2.102.10.10 40 189 3.2E-46 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2428 3c8209ba39c3e9026a3ac2119852ec54 258 Pfam PF12697 Alpha/beta hydrolase family 5 236 1.4E-13 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2428 3c8209ba39c3e9026a3ac2119852ec54 258 SUPERFAMILY SSF53474 4 243 1.06E-30 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2428 3c8209ba39c3e9026a3ac2119852ec54 258 Gene3D G3DSA:3.40.50.1820 2 244 2.6E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2611 2ca75a4a6f383bb6e8262f20188863cd 349 Gene3D G3DSA:2.102.30.10 14 297 2.4E-104 T 11-10-2018 dqs_2611 2ca75a4a6f383bb6e8262f20188863cd 349 Gene3D G3DSA:2.40.10.170 23 159 2.4E-104 T 11-10-2018 dqs_2611 2ca75a4a6f383bb6e8262f20188863cd 349 Pfam PF14505 Domain of unknown function (DUF4438) 39 301 1.7E-108 T 11-10-2018 IPR029433 Protein of unknown function DUF4438 dqs_2611 2ca75a4a6f383bb6e8262f20188863cd 349 Gene3D G3DSA:4.10.1180.10 37 75 2.4E-104 T 11-10-2018 dqs_3768 f03f15877e601923b8acf793f6f0d300 321 SUPERFAMILY SSF52200 4 106 2.09E-7 T 11-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily dqs_3768 f03f15877e601923b8acf793f6f0d300 321 Pfam PF13676 TIR domain 5 113 4.3E-18 T 11-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 dqs_3768 f03f15877e601923b8acf793f6f0d300 321 Gene3D G3DSA:3.40.50.10140 2 129 9.4E-13 T 11-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily dqs_2645 277777c929e6097e55d3e95c67ce0589 249 SMART SM00893 23 211 5.9E-68 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2645 277777c929e6097e55d3e95c67ce0589 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 6.2E-45 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 dqs_2645 277777c929e6097e55d3e95c67ce0589 249 Gene3D G3DSA:3.40.50.620 1 248 9.0E-88 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_2645 277777c929e6097e55d3e95c67ce0589 249 PIRSF PIRSF000090 1 249 4.1E-84 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_2645 277777c929e6097e55d3e95c67ce0589 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 dqs_2645 277777c929e6097e55d3e95c67ce0589 249 SUPERFAMILY SSF52402 1 242 5.37E-85 T 11-10-2018 dqs_0147 9f206b61b21a3217918640c804a2eb54 328 Gene3D G3DSA:3.40.50.10330 23 150 4.4E-26 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 dqs_0147 9f206b61b21a3217918640c804a2eb54 328 SUPERFAMILY SSF111331 25 326 4.8E-61 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily dqs_0147 9f206b61b21a3217918640c804a2eb54 328 SMART SM00046 25 150 9.4E-5 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 dqs_0147 9f206b61b21a3217918640c804a2eb54 328 Gene3D G3DSA:2.60.200.40 151 316 2.6E-23 T 11-10-2018 dqs_0147 9f206b61b21a3217918640c804a2eb54 328 Pfam PF00781 Diacylglycerol kinase catalytic domain 25 150 2.1E-23 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 Pfam PF00571 CBS domain 94 138 7.5E-10 T 11-10-2018 IPR000644 CBS domain dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 Pfam PF00571 CBS domain 147 201 1.3E-8 T 11-10-2018 IPR000644 CBS domain dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 SUPERFAMILY SSF51412 2 476 4.84E-125 T 11-10-2018 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 PIRSF PIRSF000130 1 486 5.2E-203 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 SMART SM00116 95 142 8.3E-11 T 11-10-2018 IPR000644 CBS domain dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 SMART SM00116 156 204 1.4E-5 T 11-10-2018 IPR000644 CBS domain dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 454 1.8E-189 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 293 305 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 Gene3D G3DSA:3.20.20.70 1 485 2.4E-214 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 SMART SM01240 6 472 0.0 T 11-10-2018 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 472 1.7E-162 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 485 84.839 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 dqs_1703 b3edd1ac41ced9034968d21e657f3683 486 SUPERFAMILY SSF54631 94 201 2.93E-29 T 11-10-2018 dqs_0726 4b630af3d11e71f56fc2cf424beeadf0 320 Pfam PF09925 Predicted membrane protein (DUF2157) 11 147 3.6E-26 T 11-10-2018 IPR018677 Domain of unknown function DUF2157 dqs_2699 40a1fb3b5a8ed9df50104b81b95fad2e 341 SUPERFAMILY SSF51556 1 334 5.35E-95 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_2699 40a1fb3b5a8ed9df50104b81b95fad2e 341 Pfam PF04909 Amidohydrolase 3 330 9.1E-58 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 dqs_2699 40a1fb3b5a8ed9df50104b81b95fad2e 341 Gene3D G3DSA:3.20.20.140 1 340 1.5E-96 T 11-10-2018 dqs_3998 b547ef2f6f4e822925bebac307ef9149 179 Gene3D G3DSA:3.90.1140.10 5 178 2.9E-33 T 11-10-2018 dqs_3998 b547ef2f6f4e822925bebac307ef9149 179 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 9 171 1.0E-20 T 11-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 dqs_3998 b547ef2f6f4e822925bebac307ef9149 179 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 8 178 16.899 T 11-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 dqs_3998 b547ef2f6f4e822925bebac307ef9149 179 Pfam PF02834 LigT like Phosphoesterase 15 90 1.3E-8 T 11-10-2018 IPR014051 Phosphoesterase, HXTX dqs_3998 b547ef2f6f4e822925bebac307ef9149 179 SUPERFAMILY SSF55144 9 176 4.01E-30 T 11-10-2018 IPR009097 Cyclic phosphodiesterase dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 Gene3D G3DSA:1.20.120.850 864 1087 2.6E-77 T 11-10-2018 dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 SMART SM00487 621 811 8.9E-29 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 SMART SM00490 958 1038 1.5E-18 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 SUPERFAMILY SSF52540 844 1092 7.2E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 Pfam PF00271 Helicase conserved C-terminal domain 929 1038 3.3E-15 T 11-10-2018 IPR001650 Helicase, C-terminal dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 Pfam PF00176 SNF2 family N-terminal domain 638 914 4.0E-57 T 11-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 Gene3D G3DSA:3.40.50.300 849 1052 2.6E-77 T 11-10-2018 dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 SUPERFAMILY SSF52540 600 842 4.31E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0910 f9598e9afd6455f29e4e8f5b6dfa23cb 1098 Gene3D G3DSA:3.40.50.10810 600 840 5.7E-64 T 11-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily dqs_0292 fbef3914a4d42a66320194d9a2e9e6de 251 Pfam PF11828 Protein of unknown function (DUF3348) 1 244 5.9E-82 T 11-10-2018 IPR021783 Protein of unknown function DUF3348 dqs_0904 af477b9ca5c322c9b00ae798d8f48a79 402 Pfam PF12704 MacB-like periplasmic core domain 21 244 1.7E-33 T 11-10-2018 IPR025857 MacB-like periplasmic core domain dqs_0904 af477b9ca5c322c9b00ae798d8f48a79 402 Pfam PF02687 FtsX-like permease family 308 395 1.7E-9 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_3588 2a17c1c4ea99dcc3bedcd34f6e1a6faf 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 287 1.5E-27 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 42 50 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 PIRSF PIRSF500176 36 365 2.3E-76 T 11-10-2018 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 Gene3D G3DSA:3.40.50.40 251 365 2.2E-34 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 SMART SM00870 39 359 5.4E-133 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 PIRSF PIRSF001220 34 365 4.3E-85 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 PRINTS PR00139 Asparaginase/glutaminase family signature 40 51 4.0E-20 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 PRINTS PR00139 Asparaginase/glutaminase family signature 120 138 4.0E-20 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 PRINTS PR00139 Asparaginase/glutaminase family signature 298 316 4.0E-20 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 121 131 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 Pfam PF00710 Asparaginase, N-terminal 39 226 7.4E-55 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 SUPERFAMILY SSF53774 37 364 6.8E-96 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 33 365 1.1E-112 T 11-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 dqs_0449 fcd9ae266c9a51209f1189f3a1b73cff 365 Gene3D G3DSA:3.40.50.1170 37 250 2.9E-85 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 dqs_0549 aa11be3648954cdef48d6716305064e5 491 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 27 472 9.5E-199 T 11-10-2018 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 dqs_0549 aa11be3648954cdef48d6716305064e5 491 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 12 478 4.0E-262 T 11-10-2018 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 dqs_0549 aa11be3648954cdef48d6716305064e5 491 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 62 466 1.9E-110 T 11-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 dqs_0549 aa11be3648954cdef48d6716305064e5 491 SUPERFAMILY SSF53807 7 478 4.32E-163 T 11-10-2018 dqs_0549 aa11be3648954cdef48d6716305064e5 491 Gene3D G3DSA:3.40.50.1980 206 344 3.8E-222 T 11-10-2018 dqs_0549 aa11be3648954cdef48d6716305064e5 491 Gene3D G3DSA:3.40.50.1980 27 472 3.8E-222 T 11-10-2018 dqs_0549 aa11be3648954cdef48d6716305064e5 491 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 152 166 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 dqs_0549 aa11be3648954cdef48d6716305064e5 491 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 81 88 - T 11-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 dqs_0549 aa11be3648954cdef48d6716305064e5 491 Gene3D G3DSA:3.40.50.1980 63 205 3.8E-222 T 11-10-2018 dqs_1614 e27af9bc194ff9ab86caf0a572d16ff5 131 SUPERFAMILY SSF52172 3 122 5.12E-39 T 11-10-2018 IPR011006 CheY-like superfamily dqs_1614 e27af9bc194ff9ab86caf0a572d16ff5 131 Pfam PF00072 Response regulator receiver domain 6 117 6.5E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1614 e27af9bc194ff9ab86caf0a572d16ff5 131 Gene3D G3DSA:3.40.50.12740 2 130 1.9E-46 T 11-10-2018 dqs_1614 e27af9bc194ff9ab86caf0a572d16ff5 131 SMART SM00448 4 117 3.6E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2930 e634752b4b81db0fdab76a3c853829a0 382 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 61 341 7.3E-65 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 dqs_2930 e634752b4b81db0fdab76a3c853829a0 382 Gene3D G3DSA:3.40.190.170 55 359 3.4E-126 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily dqs_2930 e634752b4b81db0fdab76a3c853829a0 382 PIRSF PIRSF039026 1 379 9.7E-125 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like dqs_2930 e634752b4b81db0fdab76a3c853829a0 382 Gene3D G3DSA:3.40.190.10 175 346 3.4E-126 T 11-10-2018 dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 PIRSF PIRSF000193 1 270 5.7E-68 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 SUPERFAMILY SSF48179 162 270 6.97E-31 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 Gene3D G3DSA:3.40.50.720 1 164 4.4E-45 T 11-10-2018 dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 SUPERFAMILY SSF51735 1 160 2.02E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 95 4.1E-17 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 267 1.3E-30 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 Gene3D G3DSA:1.10.3730.10 165 271 2.7E-36 T 11-10-2018 dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 1 267 25.957 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 dqs_3609 d0e5236be4331911f979f5ba3422fba4 274 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 3 267 1.6E-73 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 Gene3D G3DSA:3.90.380.10 227 366 6.1E-7 T 11-10-2018 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 54 69 1.5E-6 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 94 114 1.5E-6 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 24 49 1.5E-6 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 SUPERFAMILY SSF55961 158 362 2.9E-38 T 11-10-2018 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 170 363 2.0E-32 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 Gene3D G3DSA:3.90.380.10 16 204 3.3E-34 T 11-10-2018 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 SUPERFAMILY SSF50022 9 140 1.1E-30 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 Gene3D G3DSA:2.102.10.10 37 150 3.3E-34 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2663 5d9734fc40dbaf3625cd55f0b5aded9c 366 Pfam PF00355 Rieske [2Fe-2S] domain 54 118 4.8E-11 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_4062 c0614f63d0c01e29b50b4703b7e45719 262 Pfam PF01553 Acyltransferase 72 190 6.4E-12 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_4062 c0614f63d0c01e29b50b4703b7e45719 262 SMART SM00563 85 193 3.2E-12 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_4062 c0614f63d0c01e29b50b4703b7e45719 262 SUPERFAMILY SSF69593 45 225 7.19E-19 T 11-10-2018 dqs_2928 89ab3eb4d0bb16ccfabeaabef83df848 187 Gene3D G3DSA:1.10.60.30 105 176 2.0E-21 T 11-10-2018 dqs_2928 89ab3eb4d0bb16ccfabeaabef83df848 187 PIRSF PIRSF016183 2 175 1.7E-62 T 11-10-2018 IPR006839 Ribosome-associated, YjgA dqs_2928 89ab3eb4d0bb16ccfabeaabef83df848 187 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 9 172 21.365 T 11-10-2018 IPR006839 Ribosome-associated, YjgA dqs_2928 89ab3eb4d0bb16ccfabeaabef83df848 187 Pfam PF04751 Protein of unknown function (DUF615) 18 168 7.8E-54 T 11-10-2018 IPR006839 Ribosome-associated, YjgA dqs_2928 89ab3eb4d0bb16ccfabeaabef83df848 187 Gene3D G3DSA:1.10.60.30 28 102 1.9E-31 T 11-10-2018 dqs_2928 89ab3eb4d0bb16ccfabeaabef83df848 187 SUPERFAMILY SSF158710 28 170 3.01E-50 T 11-10-2018 IPR023153 PSPTO4464-like domain superfamily dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 SUPERFAMILY SSF48179 421 503 6.29E-17 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 SUPERFAMILY SSF48179 189 296 6.55E-31 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 287 3.8E-31 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 421 499 6.9E-14 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 Gene3D G3DSA:1.10.1040.50 193 501 1.4E-90 T 11-10-2018 dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 SUPERFAMILY SSF51735 9 189 9.53E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 TIGRFAM TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC 3 502 7.4E-235 T 11-10-2018 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC GO:0008691|GO:0010124 dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 Gene3D G3DSA:3.30.750.190 296 418 1.4E-90 T 11-10-2018 dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 Gene3D G3DSA:3.40.50.720 6 192 6.8E-66 T 11-10-2018 dqs_3174 2add4e909c1e6ad7ac0d14f355fdc413 508 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 185 9.7E-62 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 dqs_2666 36438b54899060c0880a2d65526fa92c 408 Pfam PF07690 Major Facilitator Superfamily 7 269 4.8E-10 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_2666 36438b54899060c0880a2d65526fa92c 408 SUPERFAMILY SSF103473 7 387 1.83E-34 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2666 36438b54899060c0880a2d65526fa92c 408 Gene3D G3DSA:1.20.1250.20 5 398 2.7E-29 T 11-10-2018 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 Pfam PF13432 Tetratricopeptide repeat 42 92 4.6E-5 T 11-10-2018 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 Pfam PF13432 Tetratricopeptide repeat 185 237 7.0E-4 T 11-10-2018 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 Gene3D G3DSA:1.25.40.10 38 176 5.1E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 SUPERFAMILY SSF48452 43 249 3.23E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 Gene3D G3DSA:1.25.40.10 177 289 1.4E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 6 386 34.505 T 11-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 SMART SM00028 214 247 38.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 SMART SM00028 108 141 340.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 SMART SM00028 180 213 47.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 SMART SM00028 36 69 33.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 SMART SM00028 70 103 57.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_1183 0396a6acb97dae3c6e7f350b0a16366f 391 SUPERFAMILY SSF48452 40 167 8.85E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2225 d67b2d42d7506ea5ec546b3fb5b3527f 390 PRINTS PR00812 Bacterial general secretion pathway protein F signature 152 180 1.4E-13 T 11-10-2018 IPR003004 GspF/PilC family dqs_2225 d67b2d42d7506ea5ec546b3fb5b3527f 390 PRINTS PR00812 Bacterial general secretion pathway protein F signature 370 389 1.4E-13 T 11-10-2018 IPR003004 GspF/PilC family dqs_2225 d67b2d42d7506ea5ec546b3fb5b3527f 390 PRINTS PR00812 Bacterial general secretion pathway protein F signature 354 368 1.4E-13 T 11-10-2018 IPR003004 GspF/PilC family dqs_2225 d67b2d42d7506ea5ec546b3fb5b3527f 390 PRINTS PR00812 Bacterial general secretion pathway protein F signature 53 65 1.4E-13 T 11-10-2018 IPR003004 GspF/PilC family dqs_2225 d67b2d42d7506ea5ec546b3fb5b3527f 390 Pfam PF00482 Type II secretion system (T2SS), protein F 260 381 7.2E-25 T 11-10-2018 IPR018076 Type II secretion system F domain dqs_2225 d67b2d42d7506ea5ec546b3fb5b3527f 390 Pfam PF00482 Type II secretion system (T2SS), protein F 59 180 4.5E-27 T 11-10-2018 IPR018076 Type II secretion system F domain dqs_2225 d67b2d42d7506ea5ec546b3fb5b3527f 390 Gene3D G3DSA:1.20.81.30 243 353 4.2E-21 T 11-10-2018 dqs_2225 d67b2d42d7506ea5ec546b3fb5b3527f 390 Gene3D G3DSA:1.20.81.30 50 159 6.4E-23 T 11-10-2018 dqs_4089 ab7d5b0102be9a9f4eefea3e69e60a10 117 SUPERFAMILY SSF52172 3 115 2.56E-34 T 11-10-2018 IPR011006 CheY-like superfamily dqs_4089 ab7d5b0102be9a9f4eefea3e69e60a10 117 Pfam PF00072 Response regulator receiver domain 4 115 2.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_4089 ab7d5b0102be9a9f4eefea3e69e60a10 117 Gene3D G3DSA:3.40.50.12740 2 116 6.0E-38 T 11-10-2018 dqs_4089 ab7d5b0102be9a9f4eefea3e69e60a10 117 SMART SM00448 2 115 3.6E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2229 be2f7c3152f00b4a572c23920fd2dc4f 435 Gene3D G3DSA:3.90.1150.10 19 426 9.7E-143 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2229 be2f7c3152f00b4a572c23920fd2dc4f 435 Pfam PF00202 Aminotransferase class-III 22 431 5.9E-90 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_2229 be2f7c3152f00b4a572c23920fd2dc4f 435 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 245 282 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 dqs_2229 be2f7c3152f00b4a572c23920fd2dc4f 435 Gene3D G3DSA:3.40.640.10 56 337 9.7E-143 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2229 be2f7c3152f00b4a572c23920fd2dc4f 435 SUPERFAMILY SSF53383 5 432 2.5E-115 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2246 6436b4e654290d5cce49565be3283148 210 SUPERFAMILY SSF55821 1 202 1.25E-58 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily dqs_2246 6436b4e654290d5cce49565be3283148 210 Pfam PF01300 Telomere recombination 22 198 2.1E-39 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 dqs_2246 6436b4e654290d5cce49565be3283148 210 Gene3D G3DSA:3.90.870.10 1 205 8.6E-59 T 11-10-2018 dqs_2246 6436b4e654290d5cce49565be3283148 210 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 8 201 9.5E-58 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 dqs_3082 17971d958297b989322195636c512740 670 SUPERFAMILY SSF53474 185 285 8.55E-10 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3082 17971d958297b989322195636c512740 670 Gene3D G3DSA:3.40.50.1820 158 329 5.5E-8 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3082 17971d958297b989322195636c512740 670 Pfam PF11678 Protein of unknown function (DUF3274) 373 645 6.2E-108 T 11-10-2018 IPR021692 Protein of unknown function DUF3274 dqs_1166 dd6de2217380292959ae237d843b1727 398 Gene3D G3DSA:2.40.440.10 133 271 1.7E-14 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like dqs_1166 dd6de2217380292959ae237d843b1727 398 SUPERFAMILY SSF141523 134 271 1.27E-16 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like dqs_1166 dd6de2217380292959ae237d843b1727 398 Gene3D G3DSA:3.10.450.50 284 397 2.2E-5 T 11-10-2018 dqs_1166 dd6de2217380292959ae237d843b1727 398 Pfam PF03734 L,D-transpeptidase catalytic domain 137 271 7.8E-18 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 dqs_1166 dd6de2217380292959ae237d843b1727 398 SUPERFAMILY SSF54427 287 394 1.99E-9 T 11-10-2018 IPR032710 NTF2-like domain superfamily dqs_3777 580279117f6521c926b176e199b924e7 600 SUPERFAMILY SSF52540 353 597 2.66E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3777 580279117f6521c926b176e199b924e7 600 Pfam PF00664 ABC transporter transmembrane region 33 310 3.4E-44 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 dqs_3777 580279117f6521c926b176e199b924e7 600 ProSitePatterns PS00211 ABC transporters family signature. 499 513 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3777 580279117f6521c926b176e199b924e7 600 Gene3D G3DSA:1.20.1560.10 14 349 2.7E-74 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_3777 580279117f6521c926b176e199b924e7 600 Pfam PF00005 ABC transporter 378 527 5.1E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3777 580279117f6521c926b176e199b924e7 600 Gene3D G3DSA:3.40.50.300 353 599 1.1E-93 T 11-10-2018 dqs_3777 580279117f6521c926b176e199b924e7 600 SMART SM00382 387 581 1.2E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3777 580279117f6521c926b176e199b924e7 600 SUPERFAMILY SSF90123 21 347 1.96E-66 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 dqs_1844 7f290039bbb399d55ee94782b4a35c89 217 Gene3D G3DSA:3.40.50.10610 36 207 3.7E-21 T 11-10-2018 dqs_1844 7f290039bbb399d55ee94782b4a35c89 217 SUPERFAMILY SSF159594 44 201 1.31E-31 T 11-10-2018 dqs_1844 7f290039bbb399d55ee94782b4a35c89 217 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 46 194 6.0E-16 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component dqs_0561 637420bc0e178ce56071441ffeff1138 396 Gene3D G3DSA:1.10.238.260 274 389 2.8E-22 T 11-10-2018 dqs_0561 637420bc0e178ce56071441ffeff1138 396 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 195 208 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_0561 637420bc0e178ce56071441ffeff1138 396 Gene3D G3DSA:3.20.20.70 2 270 2.4E-77 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0561 637420bc0e178ce56071441ffeff1138 396 SUPERFAMILY SSF51569 2 283 4.21E-76 T 11-10-2018 dqs_0561 637420bc0e178ce56071441ffeff1138 396 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 dqs_0561 637420bc0e178ce56071441ffeff1138 396 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 5 371 1.0E-152 T 11-10-2018 IPR013477 Homocitrate synthase NifV-like GO:0046912|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 dqs_0561 637420bc0e178ce56071441ffeff1138 396 Pfam PF00682 HMGL-like 5 266 1.1E-74 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 Gene3D G3DSA:3.40.250.10 23 169 1.6E-39 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 Gene3D G3DSA:3.40.250.10 170 303 1.3E-37 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 Pfam PF00581 Rhodanese-like domain 35 144 2.4E-17 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 Pfam PF00581 Rhodanese-like domain 177 293 7.2E-19 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 ProSitePatterns PS00683 Rhodanese C-terminal signature. 282 292 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 SUPERFAMILY SSF52821 28 162 1.83E-33 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 ProSitePatterns PS00380 Rhodanese signature 1. 60 71 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 SMART SM00450 34 148 4.4E-15 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 SMART SM00450 173 298 1.4E-24 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2502 a5e1b4eabcd145b5b9c94951f4898c52 311 SUPERFAMILY SSF52821 176 301 1.57E-34 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_1810 649a798bc49a06ce9325b80036c62e9a 283 PIRSF PIRSF016020 3 283 3.7E-64 T 11-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 dqs_1810 649a798bc49a06ce9325b80036c62e9a 283 Gene3D G3DSA:2.70.98.10 2 282 4.8E-88 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 dqs_1810 649a798bc49a06ce9325b80036c62e9a 283 Pfam PF01263 Aldose 1-epimerase 16 276 2.9E-42 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 dqs_1810 649a798bc49a06ce9325b80036c62e9a 283 SUPERFAMILY SSF74650 4 280 1.0E-63 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 dqs_1593 0693fb901516504e71d53ab35d9a2b86 341 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 22 334 6.2E-107 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 dqs_1593 0693fb901516504e71d53ab35d9a2b86 341 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 10 335 39.692 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 dqs_1593 0693fb901516504e71d53ab35d9a2b86 341 SUPERFAMILY SSF52540 55 170 1.12E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1593 0693fb901516504e71d53ab35d9a2b86 341 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 28 324 1.1E-69 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 dqs_2118 30fcc3727954a9d450b69560c3ef4de4 409 SUPERFAMILY SSF51905 2 354 1.97E-20 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2118 30fcc3727954a9d450b69560c3ef4de4 409 Gene3D G3DSA:3.30.9.40 65 270 6.3E-122 T 11-10-2018 dqs_2118 30fcc3727954a9d450b69560c3ef4de4 409 Gene3D G3DSA:3.50.50.60 4 322 6.3E-122 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0079 2418ce6eb63b21b5020dd551f764009a 126 Pfam PF01152 Bacterial-like globin 6 107 5.5E-5 T 11-10-2018 IPR001486 Truncated hemoglobin GO:0019825 dqs_0079 2418ce6eb63b21b5020dd551f764009a 126 Gene3D G3DSA:1.10.490.10 2 117 2.4E-39 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 dqs_0079 2418ce6eb63b21b5020dd551f764009a 126 SUPERFAMILY SSF46458 5 111 3.51E-28 T 11-10-2018 IPR009050 Globin-like superfamily dqs_1592 e19902b9c88af5af78984b2693eb0c17 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 136 3.7E-27 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 dqs_1592 e19902b9c88af5af78984b2693eb0c17 140 Gene3D G3DSA:3.30.420.270 61 133 3.4E-8 T 11-10-2018 dqs_3967 18d647dc621ea6e817f5bff00e9ea147 183 TIGRFAM TIGR01841 phasin: phasin family protein 28 110 5.1E-15 T 11-10-2018 IPR010127 Phasin, subfamily 1 dqs_3967 18d647dc621ea6e817f5bff00e9ea147 183 Pfam PF09361 Phasin protein 8 107 4.8E-24 T 11-10-2018 IPR018968 Phasin dqs_2533 d5b97da2c8219c12ca1db343a7123360 71 Gene3D G3DSA:2.40.50.100 5 69 8.1E-20 T 11-10-2018 dqs_2533 d5b97da2c8219c12ca1db343a7123360 71 Pfam PF03459 TOBE domain 8 67 4.7E-17 T 11-10-2018 IPR005116 Transport-associated OB, type 1 dqs_2533 d5b97da2c8219c12ca1db343a7123360 71 SUPERFAMILY SSF50331 6 69 5.74E-17 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_2533 d5b97da2c8219c12ca1db343a7123360 71 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 5 69 2.8E-19 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 dqs_3746 bcb16eb0ef79fd08dcee03c8a2e8e7b0 168 SMART SM00986 1 159 7.1E-7 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_3746 bcb16eb0ef79fd08dcee03c8a2e8e7b0 168 SMART SM00987 1 159 7.1E-7 T 11-10-2018 dqs_3746 bcb16eb0ef79fd08dcee03c8a2e8e7b0 168 SUPERFAMILY SSF52141 3 159 4.84E-30 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_3746 bcb16eb0ef79fd08dcee03c8a2e8e7b0 168 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 3 155 2.1E-42 T 11-10-2018 IPR026353 Hypoxanthine-DNA glycosylase dqs_3746 bcb16eb0ef79fd08dcee03c8a2e8e7b0 168 Gene3D G3DSA:3.40.470.10 1 167 2.1E-48 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_3966 1fa0617c2ea628dfc572e6f014c77cb4 209 SUPERFAMILY SSF52507 5 202 1.7E-59 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 dqs_3966 1fa0617c2ea628dfc572e6f014c77cb4 209 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 202 34.497 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like dqs_3966 1fa0617c2ea628dfc572e6f014c77cb4 209 Gene3D G3DSA:3.40.50.1950 1 206 1.3E-79 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 dqs_3966 1fa0617c2ea628dfc572e6f014c77cb4 209 Pfam PF02441 Flavoprotein 5 181 2.2E-25 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 dqs_3966 1fa0617c2ea628dfc572e6f014c77cb4 209 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 7 200 9.9E-59 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like dqs_3560 bf48bfd84f08ec9ce042ddbd647f7f70 156 PIRSF PIRSF002122 3 156 7.3E-57 T 11-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 dqs_3560 bf48bfd84f08ec9ce042ddbd647f7f70 156 Gene3D G3DSA:1.10.455.10 2 156 5.6E-61 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily dqs_3560 bf48bfd84f08ec9ce042ddbd647f7f70 156 SUPERFAMILY SSF47973 2 149 1.11E-59 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily dqs_3560 bf48bfd84f08ec9ce042ddbd647f7f70 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 1.3E-65 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 dqs_3560 bf48bfd84f08ec9ce042ddbd647f7f70 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3560 bf48bfd84f08ec9ce042ddbd647f7f70 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.304 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 dqs_3560 bf48bfd84f08ec9ce042ddbd647f7f70 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.0E-66 T 11-10-2018 IPR023798 Ribosomal protein S7 domain dqs_2398 4e56dc949e4468f9526533493eac136a 209 SUPERFAMILY SSF47616 81 194 1.67E-17 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_2398 4e56dc949e4468f9526533493eac136a 209 Gene3D G3DSA:1.20.1050.10 83 188 1.5E-46 T 11-10-2018 dqs_2398 4e56dc949e4468f9526533493eac136a 209 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 80 4.8E-13 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_2398 4e56dc949e4468f9526533493eac136a 209 Gene3D G3DSA:3.40.30.10 6 193 1.5E-46 T 11-10-2018 dqs_2398 4e56dc949e4468f9526533493eac136a 209 SUPERFAMILY SSF52833 2 84 3.1E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0325 49da825d062ffaadd6af40ee6579dfb5 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 105 330 7.2E-20 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_2656 49da825d062ffaadd6af40ee6579dfb5 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 105 330 7.2E-20 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_1669 570ad43348ed161dc39f6c900fa192c7 331 Gene3D G3DSA:3.20.20.60 1 268 1.9E-106 T 11-10-2018 dqs_1669 570ad43348ed161dc39f6c900fa192c7 331 SUPERFAMILY SSF51621 28 265 7.68E-43 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 dqs_1669 570ad43348ed161dc39f6c900fa192c7 331 PIRSF PIRSF015582 1 327 4.3E-50 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like dqs_1669 570ad43348ed161dc39f6c900fa192c7 331 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 52 256 7.4E-14 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 dqs_2680 8a9584bdf3071f63057d9ad1b2d29c1f 116 Pfam PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit 26 111 5.4E-36 T 11-10-2018 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit dqs_2680 8a9584bdf3071f63057d9ad1b2d29c1f 116 Gene3D G3DSA:1.10.700.10 1 116 5.8E-46 T 11-10-2018 IPR036622 Dioxygenase LigAB, LigA subunit superfamily dqs_2680 8a9584bdf3071f63057d9ad1b2d29c1f 116 SUPERFAMILY SSF48076 5 115 7.85E-40 T 11-10-2018 IPR036622 Dioxygenase LigAB, LigA subunit superfamily dqs_2860 9738ad0e66d79fd50040dd31f0f86f53 107 Pfam PF04347 Flagellar biosynthesis protein, FliO 17 100 2.9E-21 T 11-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 dqs_2860 9738ad0e66d79fd50040dd31f0f86f53 107 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 5 71 6.9E-19 T 11-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 dqs_0074 d88f2331fc0620078517d5f7a181666e 367 Pfam PF01594 AI-2E family transporter 14 344 4.0E-38 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like dqs_1382 c2ba735336e554aeb060125d310ff1d4 161 Gene3D G3DSA:3.10.129.10 1 153 1.1E-55 T 11-10-2018 dqs_1382 c2ba735336e554aeb060125d310ff1d4 161 SUPERFAMILY SSF54637 5 153 4.13E-45 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_1382 c2ba735336e554aeb060125d310ff1d4 161 Pfam PF03061 Thioesterase superfamily 23 94 4.4E-15 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 dqs_0595 d8fc7d973c3c2c0cdcef13ab228c6c1f 97 Gene3D G3DSA:4.10.520.10 1 96 2.4E-24 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 dqs_0595 d8fc7d973c3c2c0cdcef13ab228c6c1f 97 SMART SM00411 1 95 1.1E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_0595 d8fc7d973c3c2c0cdcef13ab228c6c1f 97 PRINTS PR01727 Prokaryotic integration host factor signature 79 93 4.6E-5 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_0595 d8fc7d973c3c2c0cdcef13ab228c6c1f 97 PRINTS PR01727 Prokaryotic integration host factor signature 63 76 4.6E-5 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_0595 d8fc7d973c3c2c0cdcef13ab228c6c1f 97 SUPERFAMILY SSF47729 1 95 8.24E-21 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 dqs_0595 d8fc7d973c3c2c0cdcef13ab228c6c1f 97 Pfam PF00216 Bacterial DNA-binding protein 1 95 8.3E-22 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 dqs_1425 636b52c23e5e98ebc6ec80efd71750e5 165 Pfam PF05638 Type VI secretion system effector, Hcp 6 138 4.8E-46 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp dqs_1425 636b52c23e5e98ebc6ec80efd71750e5 165 Gene3D G3DSA:2.30.110.20 2 165 3.4E-62 T 11-10-2018 IPR036624 Hcp1-like superfamily dqs_1425 636b52c23e5e98ebc6ec80efd71750e5 165 SUPERFAMILY SSF141452 2 163 6.93E-54 T 11-10-2018 IPR036624 Hcp1-like superfamily dqs_1425 636b52c23e5e98ebc6ec80efd71750e5 165 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 157 1.4E-39 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp dqs_1225 d3dc9e929d60a10ba96acb040ca0f23d 262 TIGRFAM TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family 13 261 4.3E-76 T 11-10-2018 IPR006355 HAD hydrolase, LHPP/HDHD2 dqs_1225 d3dc9e929d60a10ba96acb040ca0f23d 262 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 15 230 3.8E-30 T 11-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA dqs_1225 d3dc9e929d60a10ba96acb040ca0f23d 262 SUPERFAMILY SSF56784 13 254 2.71E-53 T 11-10-2018 IPR036412 HAD-like superfamily dqs_1225 d3dc9e929d60a10ba96acb040ca0f23d 262 Pfam PF13344 Haloacid dehalogenase-like hydrolase 15 91 7.6E-17 T 11-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA dqs_1225 d3dc9e929d60a10ba96acb040ca0f23d 262 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 181 227 6.7E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 dqs_1225 d3dc9e929d60a10ba96acb040ca0f23d 262 Gene3D G3DSA:3.40.50.1000 13 252 1.4E-77 T 11-10-2018 IPR023214 HAD superfamily dqs_1225 d3dc9e929d60a10ba96acb040ca0f23d 262 Gene3D G3DSA:3.40.50.1000 84 185 1.4E-77 T 11-10-2018 IPR023214 HAD superfamily dqs_1225 d3dc9e929d60a10ba96acb040ca0f23d 262 Pfam PF13242 HAD-hyrolase-like 181 253 1.7E-20 T 11-10-2018 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 Gene3D G3DSA:3.30.1360.70 3 107 1.0E-25 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 128 137 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 SUPERFAMILY SSF55190 5 110 7.98E-24 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 Pfam PF00750 tRNA synthetases class I (R) 304 435 6.3E-13 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 Pfam PF00750 tRNA synthetases class I (R) 100 174 1.5E-11 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 9 90 6.1E-25 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 SUPERFAMILY SSF47323 465 587 4.9E-36 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 SMART SM00836 470 587 6.9E-52 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 SUPERFAMILY SSF52374 114 480 2.36E-88 T 11-10-2018 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 9 587 2.8E-129 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 Pfam PF05746 DALR anticodon binding domain 470 587 3.3E-35 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 Hamap MF_00123 Arginine--tRNA ligase [argS]. 7 587 25.912 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 SMART SM01016 7 90 1.2E-34 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 339 360 2.4E-21 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 118 133 2.4E-21 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 133 149 2.4E-21 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 dqs_0392 a257e60b05770a2f7cb547c1b72c2297 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 157 170 2.4E-21 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 dqs_2078 9834ecbc7a1b1367e06769bb9839f5c7 407 SUPERFAMILY SSF89796 3 407 1.57E-148 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily dqs_2078 9834ecbc7a1b1367e06769bb9839f5c7 407 Gene3D G3DSA:3.40.50.10540 5 401 1.9E-145 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily dqs_2078 9834ecbc7a1b1367e06769bb9839f5c7 407 Gene3D G3DSA:3.30.1540.10 243 334 1.9E-145 T 11-10-2018 dqs_2078 9834ecbc7a1b1367e06769bb9839f5c7 407 Pfam PF02515 CoA-transferase family III 5 383 1.2E-133 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 dqs_0218 8d9403ef5466a77a57a4e3883b783192 365 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 32 309 2.8E-54 T 11-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 dqs_0218 8d9403ef5466a77a57a4e3883b783192 365 SUPERFAMILY SSF53822 189 271 7.95E-5 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_0218 8d9403ef5466a77a57a4e3883b783192 365 Gene3D G3DSA:3.40.50.2300 33 290 1.2E-128 T 11-10-2018 dqs_0218 8d9403ef5466a77a57a4e3883b783192 365 Gene3D G3DSA:3.40.50.2300 136 353 1.2E-128 T 11-10-2018 dqs_0317 195b5fe4c4a8f774aaf254ce19bf42d0 331 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 28 315 2.8E-164 T 11-10-2018 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.149 dqs_0317 195b5fe4c4a8f774aaf254ce19bf42d0 331 Gene3D G3DSA:1.20.1260.10 22 329 4.9E-129 T 11-10-2018 IPR012347 Ferritin-like dqs_0317 195b5fe4c4a8f774aaf254ce19bf42d0 331 SUPERFAMILY SSF47240 48 288 3.85E-83 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_0317 195b5fe4c4a8f774aaf254ce19bf42d0 331 Pfam PF05138 Phenylacetic acid catabolic protein 38 311 4.2E-104 T 11-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 dqs_1458 0f6759f0325cb85ab026b8cdb79ad937 404 Gene3D G3DSA:1.10.530.10 75 322 3.2E-83 T 11-10-2018 dqs_1458 0f6759f0325cb85ab026b8cdb79ad937 404 Gene3D G3DSA:1.10.101.10 330 404 7.5E-10 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 dqs_1458 0f6759f0325cb85ab026b8cdb79ad937 404 Gene3D G3DSA:1.10.8.350 45 208 3.2E-83 T 11-10-2018 dqs_1458 0f6759f0325cb85ab026b8cdb79ad937 404 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 36 326 1.6E-110 T 11-10-2018 IPR011970 Lytic murein transglycosylase dqs_1458 0f6759f0325cb85ab026b8cdb79ad937 404 Pfam PF01471 Putative peptidoglycan binding domain 344 399 9.8E-11 T 11-10-2018 IPR002477 Peptidoglycan binding-like dqs_1458 0f6759f0325cb85ab026b8cdb79ad937 404 Pfam PF13406 Transglycosylase SLT domain 35 323 6.8E-107 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 dqs_1458 0f6759f0325cb85ab026b8cdb79ad937 404 SUPERFAMILY SSF47090 330 401 1.52E-16 T 11-10-2018 IPR036365 PGBD-like superfamily dqs_1458 0f6759f0325cb85ab026b8cdb79ad937 404 SUPERFAMILY SSF53955 19 330 7.87E-98 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_0178 23d23937a33a38e737563f01c67d9a2e 172 Pfam PF12276 Protein of unknown function (DUF3617) 3 144 1.0E-12 T 11-10-2018 IPR022061 Protein of unknown function DUF3617 dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 Gene3D G3DSA:3.40.50.300 298 572 1.3E-104 T 11-10-2018 dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 Gene3D G3DSA:3.30.300.160 67 140 5.8E-7 T 11-10-2018 dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 11 571 6.8E-250 T 11-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 SMART SM00382 323 458 0.0036 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 46 146 1.2E-15 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 SUPERFAMILY SSF52540 182 568 1.15E-96 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 SUPERFAMILY SSF160246 8 143 7.59E-29 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 Pfam PF00437 Type II/IV secretion system protein 196 462 1.5E-88 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 Gene3D G3DSA:3.30.450.90 160 295 6.7E-48 T 11-10-2018 dqs_3371 0ba9bac968486e58e3ddde690cc84883 572 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 390 404 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_1041 63869d9ca91abe900bdf7d1db13c91ac 416 SUPERFAMILY SSF54373 275 365 7.85E-14 T 11-10-2018 dqs_1041 63869d9ca91abe900bdf7d1db13c91ac 416 SUPERFAMILY SSF51905 1 411 4.27E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1041 63869d9ca91abe900bdf7d1db13c91ac 416 Pfam PF01266 FAD dependent oxidoreductase 2 403 1.2E-64 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_1041 63869d9ca91abe900bdf7d1db13c91ac 416 Gene3D G3DSA:3.50.50.60 3 62 4.8E-10 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1041 63869d9ca91abe900bdf7d1db13c91ac 416 Gene3D G3DSA:3.50.50.60 100 410 4.5E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_1041 63869d9ca91abe900bdf7d1db13c91ac 416 Gene3D G3DSA:3.30.9.10 134 367 4.5E-49 T 11-10-2018 dqs_1955 985f886afddad13120a39d4b412d614e 404 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 119 365 1.1E-28 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 dqs_1955 985f886afddad13120a39d4b412d614e 404 Gene3D G3DSA:3.40.50.2000 38 203 1.2E-23 T 11-10-2018 dqs_1955 985f886afddad13120a39d4b412d614e 404 Gene3D G3DSA:3.40.50.2000 211 388 4.4E-44 T 11-10-2018 dqs_1955 985f886afddad13120a39d4b412d614e 404 SUPERFAMILY SSF53756 43 387 1.36E-81 T 11-10-2018 dqs_3484 37aaa607852ee613d1bf23dde10785ee 195 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 156 168 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 dqs_3484 37aaa607852ee613d1bf23dde10785ee 195 Gene3D G3DSA:3.30.230.40 1 89 3.3E-37 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 dqs_3484 37aaa607852ee613d1bf23dde10785ee 195 SUPERFAMILY SSF54211 1 86 2.53E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_3484 37aaa607852ee613d1bf23dde10785ee 195 Gene3D G3DSA:3.30.230.40 90 195 4.8E-38 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 dqs_3484 37aaa607852ee613d1bf23dde10785ee 195 SUPERFAMILY SSF54211 88 178 2.28E-34 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_3484 37aaa607852ee613d1bf23dde10785ee 195 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 31 174 5.3E-65 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 dqs_3484 37aaa607852ee613d1bf23dde10785ee 195 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 61 74 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 dqs_3484 37aaa607852ee613d1bf23dde10785ee 195 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 2 195 42.557 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 dqs_4075 752dc96716086cd7205e89f7865fd010 148 Pfam PF03100 CcmE 4 130 1.1E-49 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 dqs_4075 752dc96716086cd7205e89f7865fd010 148 Gene3D G3DSA:2.40.50.140 29 136 1.1E-41 T 11-10-2018 dqs_4075 752dc96716086cd7205e89f7865fd010 148 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 140 32.806 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 dqs_4075 752dc96716086cd7205e89f7865fd010 148 SUPERFAMILY SSF82093 29 136 1.03E-40 T 11-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 dqs_3406 fd313330d8c1dcd290934c86778d22c5 448 Pfam PF04932 O-Antigen ligase 204 346 5.1E-17 T 11-10-2018 IPR007016 O-antigen ligase-related dqs_3406 fd313330d8c1dcd290934c86778d22c5 448 TIGRFAM TIGR03097 PEP_O_lig_1: probable O-glycosylation ligase, exosortase A-associated 4 415 3.3E-148 T 11-10-2018 IPR017528 Conserved hypothetical protein CHP03097, O-antigen ligase-related dqs_1455 c038648b3881ec2640da28e93978461d 295 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 29 287 6.2E-126 T 11-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 dqs_1455 c038648b3881ec2640da28e93978461d 295 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 25 285 3.1E-100 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 dqs_1455 c038648b3881ec2640da28e93978461d 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 282 1.5E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_1455 c038648b3881ec2640da28e93978461d 295 SUPERFAMILY SSF161098 28 279 4.71E-56 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1455 c038648b3881ec2640da28e93978461d 295 Gene3D G3DSA:1.10.3720.10 31 286 1.3E-63 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2397 707ec270fd2ff03f256805e9166f5ec7 242 SMART SM00382 28 215 4.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2397 707ec270fd2ff03f256805e9166f5ec7 242 Gene3D G3DSA:3.40.50.300 1 242 2.8E-75 T 11-10-2018 dqs_2397 707ec270fd2ff03f256805e9166f5ec7 242 SUPERFAMILY SSF52540 3 235 1.36E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2397 707ec270fd2ff03f256805e9166f5ec7 242 Pfam PF00005 ABC transporter 19 167 2.0E-37 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2397 707ec270fd2ff03f256805e9166f5ec7 242 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2397 707ec270fd2ff03f256805e9166f5ec7 242 PIRSF PIRSF039085 1 242 1.2E-108 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 dqs_2303 eb7b0df298e56bce80115ffd971e0b26 138 SUPERFAMILY SSF51316 6 133 1.36E-59 T 11-10-2018 IPR011057 Mss4-like superfamily dqs_2303 eb7b0df298e56bce80115ffd971e0b26 138 Pfam PF01641 SelR domain 11 129 3.0E-55 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 dqs_2303 eb7b0df298e56bce80115ffd971e0b26 138 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 7 134 9.6E-56 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 dqs_2303 eb7b0df298e56bce80115ffd971e0b26 138 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 8 131 35.59 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 dqs_2303 eb7b0df298e56bce80115ffd971e0b26 138 Gene3D G3DSA:2.170.150.20 1 134 3.3E-64 T 11-10-2018 dqs_3925 8d95a42afceef4cb6822b41ab940d3f0 498 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 127 139 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 dqs_3925 8d95a42afceef4cb6822b41ab940d3f0 498 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 14 37 - T 11-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 dqs_3925 8d95a42afceef4cb6822b41ab940d3f0 498 Pfam PF00069 Protein kinase domain 9 260 5.8E-49 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_3925 8d95a42afceef4cb6822b41ab940d3f0 498 SUPERFAMILY SSF56112 4 270 3.81E-80 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_3925 8d95a42afceef4cb6822b41ab940d3f0 498 Gene3D G3DSA:3.30.200.20 1 87 1.1E-25 T 11-10-2018 dqs_3925 8d95a42afceef4cb6822b41ab940d3f0 498 PIRSF PIRSF000654 5 270 1.6E-25 T 11-10-2018 dqs_3925 8d95a42afceef4cb6822b41ab940d3f0 498 Gene3D G3DSA:1.10.510.10 89 280 3.6E-52 T 11-10-2018 dqs_3925 8d95a42afceef4cb6822b41ab940d3f0 498 SMART SM00220 8 269 7.8E-59 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_1079 df97a780fc2ba5933eb51611dfd36871 87 SUPERFAMILY SSF46955 26 81 9.16E-10 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_1079 df97a780fc2ba5933eb51611dfd36871 87 Pfam PF12728 Helix-turn-helix domain 33 76 2.5E-7 T 11-10-2018 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 1.1E-21 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 1.1E-21 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 181 202 1.1E-21 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 138 161 1.1E-21 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 89 102 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 SUPERFAMILY SSF56655 20 265 3.53E-63 T 11-10-2018 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 Gene3D G3DSA:3.30.540.10 8 157 8.8E-38 T 11-10-2018 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 Gene3D G3DSA:3.40.190.80 158 266 1.2E-21 T 11-10-2018 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 215 229 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 dqs_2972 f4e9ca171c314376a7fe65cf32993bde 269 Pfam PF00459 Inositol monophosphatase family 27 259 8.3E-48 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 dqs_3467 bc1f9fbe33deb05f8e866ac660f4697b 232 SUPERFAMILY SSF56281 5 215 1.15E-38 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3467 bc1f9fbe33deb05f8e866ac660f4697b 232 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 59 80 3.1E-7 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 dqs_3467 bc1f9fbe33deb05f8e866ac660f4697b 232 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 27 45 3.1E-7 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 dqs_3467 bc1f9fbe33deb05f8e866ac660f4697b 232 Pfam PF12706 Beta-lactamase superfamily domain 5 163 4.9E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3467 bc1f9fbe33deb05f8e866ac660f4697b 232 SMART SM00849 1 199 3.0E-5 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3467 bc1f9fbe33deb05f8e866ac660f4697b 232 Gene3D G3DSA:3.60.15.10 1 219 1.5E-36 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0044 737c75d32c0443ae8fb926d98c877ad1 620 Pfam PF06980 Protein of unknown function (DUF1302) 29 620 1.5E-175 T 11-10-2018 IPR010727 Protein of unknown function DUF1302 dqs_4104 65d73fe222cdc35c37b713314965d8af 346 Pfam PF00069 Protein kinase domain 48 314 2.6E-36 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_4104 65d73fe222cdc35c37b713314965d8af 346 SUPERFAMILY SSF56112 43 316 2.05E-54 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_4104 65d73fe222cdc35c37b713314965d8af 346 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 186 198 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 dqs_4104 65d73fe222cdc35c37b713314965d8af 346 Gene3D G3DSA:1.10.510.10 43 336 1.0E-50 T 11-10-2018 dqs_4104 65d73fe222cdc35c37b713314965d8af 346 SMART SM00220 48 319 1.6E-34 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_2758 b28af30dd692f2555360fbf1543c70ad 531 Gene3D G3DSA:3.40.50.10140 373 505 4.3E-14 T 11-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily dqs_2758 b28af30dd692f2555360fbf1543c70ad 531 Pfam PF13676 TIR domain 377 485 5.0E-16 T 11-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 dqs_2758 b28af30dd692f2555360fbf1543c70ad 531 SUPERFAMILY SSF52200 376 493 4.05E-10 T 11-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily dqs_3397 ec848fe55f11bc96884728058fe4c0a1 392 Pfam PF00535 Glycosyl transferase family 2 7 109 8.2E-30 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_3397 ec848fe55f11bc96884728058fe4c0a1 392 Gene3D G3DSA:3.90.550.10 1 243 7.5E-47 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3397 ec848fe55f11bc96884728058fe4c0a1 392 SUPERFAMILY SSF53448 6 213 4.94E-45 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2517 b5775a8f04c93125740c4fb4b8af0be0 256 SUPERFAMILY SSF53639 15 219 1.29E-57 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily dqs_2517 b5775a8f04c93125740c4fb4b8af0be0 256 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 20 198 3.0E-43 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal dqs_2517 b5775a8f04c93125740c4fb4b8af0be0 256 Gene3D G3DSA:3.40.225.10 8 256 1.4E-72 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily dqs_2517 b5775a8f04c93125740c4fb4b8af0be0 256 SMART SM01007 19 198 5.5E-54 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal dqs_2406 c99a431f58c7b7fd910b41c5334420a6 336 Gene3D G3DSA:3.40.190.10 33 301 4.4E-136 T 11-10-2018 dqs_2406 c99a431f58c7b7fd910b41c5334420a6 336 Pfam PF13531 Bacterial extracellular solute-binding protein 39 286 3.8E-47 T 11-10-2018 dqs_2406 c99a431f58c7b7fd910b41c5334420a6 336 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 26 332 2.5E-150 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 dqs_2406 c99a431f58c7b7fd910b41c5334420a6 336 Gene3D G3DSA:3.40.190.10 121 331 4.4E-136 T 11-10-2018 dqs_2406 c99a431f58c7b7fd910b41c5334420a6 336 SUPERFAMILY SSF53850 27 334 6.01E-88 T 11-10-2018 dqs_2581 1291830fa89f8464df7d72ca584c4283 239 SUPERFAMILY SSF46785 13 84 4.99E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2581 1291830fa89f8464df7d72ca584c4283 239 SMART SM00345 22 80 3.8E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2581 1291830fa89f8464df7d72ca584c4283 239 Pfam PF07729 FCD domain 90 219 1.0E-20 T 11-10-2018 IPR011711 GntR, C-terminal dqs_2581 1291830fa89f8464df7d72ca584c4283 239 Gene3D G3DSA:1.20.120.530 84 231 5.6E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_2581 1291830fa89f8464df7d72ca584c4283 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 1.1E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 dqs_2581 1291830fa89f8464df7d72ca584c4283 239 SMART SM00895 90 220 2.0E-17 T 11-10-2018 IPR011711 GntR, C-terminal dqs_2581 1291830fa89f8464df7d72ca584c4283 239 Gene3D G3DSA:1.10.10.10 6 81 1.6E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2581 1291830fa89f8464df7d72ca584c4283 239 SUPERFAMILY SSF48008 87 226 2.62E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal dqs_1725 8c9fb631d43e456b7dfe04837e75017e 326 Pfam PF01841 Transglutaminase-like superfamily 164 261 1.1E-20 T 11-10-2018 IPR002931 Transglutaminase-like dqs_1725 8c9fb631d43e456b7dfe04837e75017e 326 SUPERFAMILY SSF54001 134 288 5.3E-42 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_1725 8c9fb631d43e456b7dfe04837e75017e 326 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 16 94 7.3E-25 T 11-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal dqs_1725 8c9fb631d43e456b7dfe04837e75017e 326 SMART SM00460 193 263 1.2E-19 T 11-10-2018 IPR002931 Transglutaminase-like dqs_1725 8c9fb631d43e456b7dfe04837e75017e 326 Gene3D G3DSA:3.10.620.30 119 293 2.1E-46 T 11-10-2018 dqs_0057 e37087a77325d9bc1fc5bdf99271653f 251 Gene3D G3DSA:2.60.120.380 114 217 7.1E-6 T 11-10-2018 dqs_0057 e37087a77325d9bc1fc5bdf99271653f 251 Pfam PF09906 Uncharacterized protein conserved in bacteria (DUF2135) 191 236 3.8E-17 T 11-10-2018 IPR019220 Domain of unknown function DUF2135 dqs_2534 05bdc7bb22922dfe141ac05801e7a88a 123 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 8 97 2.9E-8 T 11-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 dqs_4096 3cf91967ca101efa369dae97c83d22ee 204 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 1.3E-72 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 dqs_4096 3cf91967ca101efa369dae97c83d22ee 204 Gene3D G3DSA:3.30.63.10 34 93 2.6E-67 T 11-10-2018 dqs_4096 3cf91967ca101efa369dae97c83d22ee 204 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 37.724 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 dqs_4096 3cf91967ca101efa369dae97c83d22ee 204 Pfam PF00625 Guanylate kinase 5 182 5.0E-46 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit dqs_4096 3cf91967ca101efa369dae97c83d22ee 204 SMART SM00072 2 184 9.0E-63 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit dqs_4096 3cf91967ca101efa369dae97c83d22ee 204 Gene3D G3DSA:3.40.50.300 7 180 2.6E-67 T 11-10-2018 dqs_4096 3cf91967ca101efa369dae97c83d22ee 204 SUPERFAMILY SSF52540 2 186 7.31E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4096 3cf91967ca101efa369dae97c83d22ee 204 ProSitePatterns PS00856 Guanylate kinase-like signature. 37 54 - T 11-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 dqs_1746 cefb70a0fd6b26985514d2b5e7687eaf 59 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.404 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1746 cefb70a0fd6b26985514d2b5e7687eaf 59 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 2.3E-20 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1746 cefb70a0fd6b26985514d2b5e7687eaf 59 Pfam PF01783 Ribosomal L32p protein family 2 55 8.1E-20 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_1746 cefb70a0fd6b26985514d2b5e7687eaf 59 SUPERFAMILY SSF57829 2 55 6.1E-18 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 dqs_2676 86af588c2f9b92913db0514eaa214df4 441 PIRSF PIRSF006066 5 441 1.5E-85 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_2676 86af588c2f9b92913db0514eaa214df4 441 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 431 4.3E-83 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit dqs_2676 86af588c2f9b92913db0514eaa214df4 441 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 22 435 3.2E-86 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_1289 1c27b92424b472bf7f7aff651ef50687 112 Gene3D G3DSA:2.102.10.10 1 111 3.3E-35 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_1289 1c27b92424b472bf7f7aff651ef50687 112 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 7 110 5.6E-34 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 dqs_1289 1c27b92424b472bf7f7aff651ef50687 112 Pfam PF13806 Rieske-like [2Fe-2S] domain 7 109 4.9E-36 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 dqs_1289 1c27b92424b472bf7f7aff651ef50687 112 SUPERFAMILY SSF50022 6 111 7.38E-36 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_3354 124c7ae69a6f80d2479bcab150ef68c3 336 Gene3D G3DSA:1.10.8.60 142 212 1.7E-25 T 11-10-2018 dqs_3354 124c7ae69a6f80d2479bcab150ef68c3 336 SUPERFAMILY SSF52540 3 210 1.37E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3354 124c7ae69a6f80d2479bcab150ef68c3 336 Gene3D G3DSA:1.20.272.10 216 336 3.3E-31 T 11-10-2018 dqs_3354 124c7ae69a6f80d2479bcab150ef68c3 336 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 219 335 8.0E-12 T 11-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_3354 124c7ae69a6f80d2479bcab150ef68c3 336 Gene3D G3DSA:3.40.50.300 1 139 8.6E-47 T 11-10-2018 dqs_3354 124c7ae69a6f80d2479bcab150ef68c3 336 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 334 5.8E-82 T 11-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 dqs_3354 124c7ae69a6f80d2479bcab150ef68c3 336 SUPERFAMILY SSF48019 212 335 7.65E-27 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 dqs_3354 124c7ae69a6f80d2479bcab150ef68c3 336 Pfam PF06144 DNA polymerase III, delta subunit 21 188 2.3E-20 T 11-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 123 4.1E-27 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 Pfam PF00361 Proton-conducting membrane transporter 135 415 1.0E-85 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 7 670 9.5E-246 T 11-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 427 446 4.6E-66 T 11-10-2018 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 322 334 4.6E-66 T 11-10-2018 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 4.6E-66 T 11-10-2018 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 232 253 4.6E-66 T 11-10-2018 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 4.6E-66 T 11-10-2018 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 254 280 4.6E-66 T 11-10-2018 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 4.6E-66 T 11-10-2018 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 490 511 1.5E-15 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 272 294 1.5E-15 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 426 448 1.5E-15 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 1.5E-15 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 dqs_1531 9f1ca62f4616e6f4fa3a0d9d4bda11e3 674 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 60 84 1.5E-15 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 Pfam PF13672 Protein phosphatase 2C 36 202 1.9E-11 T 11-10-2018 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 SUPERFAMILY SSF81606 5 234 4.19E-51 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 Gene3D G3DSA:1.10.510.10 346 514 3.3E-41 T 11-10-2018 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 SMART SM00220 266 522 1.1E-12 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 Gene3D G3DSA:3.60.40.10 1 230 7.6E-48 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 SMART SM00332 1 231 3.3E-14 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 Pfam PF00069 Protein kinase domain 333 462 4.5E-26 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 SMART SM00331 18 233 1.7E-25 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 SUPERFAMILY SSF56112 281 526 2.34E-41 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_1409 c1633dd3e3d7c74733344648a2dcf68c 560 Gene3D G3DSA:3.30.200.20 248 345 3.3E-41 T 11-10-2018 dqs_3774 eecdf32d2a6bcdf29fe0c7ad3ce95c1d 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 4.1E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_3774 eecdf32d2a6bcdf29fe0c7ad3ce95c1d 295 Gene3D G3DSA:3.40.190.10 93 289 3.6E-68 T 11-10-2018 dqs_3774 eecdf32d2a6bcdf29fe0c7ad3ce95c1d 295 SUPERFAMILY SSF46785 4 112 2.17E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3774 eecdf32d2a6bcdf29fe0c7ad3ce95c1d 295 Gene3D G3DSA:1.10.10.10 1 87 3.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_3774 eecdf32d2a6bcdf29fe0c7ad3ce95c1d 295 SUPERFAMILY SSF53850 89 294 1.81E-43 T 11-10-2018 dqs_3774 eecdf32d2a6bcdf29fe0c7ad3ce95c1d 295 Pfam PF03466 LysR substrate binding domain 88 293 3.1E-44 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3774 eecdf32d2a6bcdf29fe0c7ad3ce95c1d 295 Gene3D G3DSA:3.40.190.10 164 264 3.6E-68 T 11-10-2018 dqs_0205 46e862bb58d042f7b5f92ff8b6f7a8bb 158 Pfam PF01575 MaoC like domain 28 130 7.5E-14 T 11-10-2018 IPR002539 MaoC-like dehydratase domain dqs_0205 46e862bb58d042f7b5f92ff8b6f7a8bb 158 SUPERFAMILY SSF54637 11 155 8.17E-36 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_0205 46e862bb58d042f7b5f92ff8b6f7a8bb 158 Gene3D G3DSA:3.10.129.10 11 157 7.2E-47 T 11-10-2018 dqs_3732 8ad8514901d4dd309c67dd2cdca0c0f7 277 Pfam PF00535 Glycosyl transferase family 2 33 196 3.0E-11 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_3732 8ad8514901d4dd309c67dd2cdca0c0f7 277 Gene3D G3DSA:3.90.550.10 27 264 1.5E-24 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3732 8ad8514901d4dd309c67dd2cdca0c0f7 277 SUPERFAMILY SSF53448 33 236 6.28E-22 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2339 dd312bef071dbc05c655ab3e2ca229f8 555 SUPERFAMILY SSF161098 12 266 1.57E-39 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2339 dd312bef071dbc05c655ab3e2ca229f8 555 Gene3D G3DSA:1.10.3720.10 294 554 1.0E-32 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2339 dd312bef071dbc05c655ab3e2ca229f8 555 SUPERFAMILY SSF161098 295 552 5.76E-36 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2339 dd312bef071dbc05c655ab3e2ca229f8 555 Gene3D G3DSA:1.10.3720.10 15 276 5.1E-48 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2339 dd312bef071dbc05c655ab3e2ca229f8 555 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 352 550 4.3E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_2339 dd312bef071dbc05c655ab3e2ca229f8 555 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 263 3.5E-10 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_0552 19952b02bada35adcb14f5ae6c41e1ef 67 Pfam PF00037 4Fe-4S binding domain 4 26 9.0E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_0552 19952b02bada35adcb14f5ae6c41e1ef 67 Gene3D G3DSA:3.30.70.20 2 66 7.0E-19 T 11-10-2018 dqs_0552 19952b02bada35adcb14f5ae6c41e1ef 67 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_0552 19952b02bada35adcb14f5ae6c41e1ef 67 SUPERFAMILY SSF54862 5 59 1.3E-13 T 11-10-2018 dqs_2571 d462f0aea6633db4466f34bdf9bf9546 196 Pfam PF03992 Antibiotic biosynthesis monooxygenase 18 86 9.6E-9 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain dqs_2571 d462f0aea6633db4466f34bdf9bf9546 196 Gene3D G3DSA:3.30.70.100 18 111 1.7E-13 T 11-10-2018 dqs_2571 d462f0aea6633db4466f34bdf9bf9546 196 SUPERFAMILY SSF54909 18 111 8.43E-23 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_0660 7d0412cbba02a325b85e16d91624e01f 290 PIRSF PIRSF026649 1 290 1.1E-92 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 dqs_0660 7d0412cbba02a325b85e16d91624e01f 290 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 3 281 2.8E-64 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 dqs_3846 d33aafe8d5fa62f49d0ffc194f2d4216 101 SUPERFAMILY SSF54909 1 100 6.08E-32 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_3846 d33aafe8d5fa62f49d0ffc194f2d4216 101 Gene3D G3DSA:3.30.70.100 1 101 2.2E-33 T 11-10-2018 dqs_3846 d33aafe8d5fa62f49d0ffc194f2d4216 101 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 78 1.8E-20 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 SUPERFAMILY SSF53623 105 322 3.01E-51 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 Gene3D G3DSA:3.40.1390.10 1 85 8.1E-21 T 11-10-2018 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 2 457 33.13 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 Pfam PF08245 Mur ligase middle domain 110 304 4.0E-45 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 Pfam PF01225 Mur ligase family, catalytic domain 24 100 8.6E-14 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 Gene3D G3DSA:3.40.1190.10 86 320 8.5E-77 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 403 1.8E-11 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 Gene3D G3DSA:3.90.190.20 324 460 6.6E-40 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 456 1.7E-133 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 SUPERFAMILY SSF53244 325 456 6.67E-38 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 dqs_0951 9119e6bb1e30ab3cde6a2f84c3a86b04 470 SUPERFAMILY SSF63418 17 100 3.27E-23 T 11-10-2018 IPR035911 MurE/MurF, N-terminal dqs_0029 7c84926d23702f4c0c7c57b9328620d1 379 Gene3D G3DSA:3.40.50.2300 152 371 1.7E-117 T 11-10-2018 dqs_0029 7c84926d23702f4c0c7c57b9328620d1 379 Gene3D G3DSA:3.40.50.2300 33 367 1.7E-117 T 11-10-2018 dqs_0029 7c84926d23702f4c0c7c57b9328620d1 379 Pfam PF13458 Periplasmic binding protein 33 366 1.9E-65 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_0029 7c84926d23702f4c0c7c57b9328620d1 379 SUPERFAMILY SSF53822 33 377 8.9E-80 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_2665 b73a8038f12ec6cd2d942b29910bd2f4 200 Pfam PF13523 Acetyltransferase (GNAT) domain 30 171 5.8E-46 T 11-10-2018 dqs_2665 b73a8038f12ec6cd2d942b29910bd2f4 200 SUPERFAMILY SSF55729 12 184 2.84E-40 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_2665 b73a8038f12ec6cd2d942b29910bd2f4 200 Gene3D G3DSA:3.40.630.30 1 187 2.4E-48 T 11-10-2018 dqs_2665 b73a8038f12ec6cd2d942b29910bd2f4 200 SMART SM01006 25 72 3.0E-9 T 11-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain dqs_1540 9a0b187e815c15c8c26c08e7f606aa59 161 SUPERFAMILY SSF53163 1 149 3.92E-23 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily dqs_1540 9a0b187e815c15c8c26c08e7f606aa59 161 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 139 1.6E-16 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 dqs_1540 9a0b187e815c15c8c26c08e7f606aa59 161 Gene3D G3DSA:3.40.50.1450 1 149 3.9E-23 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily dqs_2224 eb23308d8940fd8cf4300913f32d892d 558 Gene3D G3DSA:3.40.50.300 284 556 1.7E-101 T 11-10-2018 dqs_2224 eb23308d8940fd8cf4300913f32d892d 558 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 377 391 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2224 eb23308d8940fd8cf4300913f32d892d 558 SUPERFAMILY SSF160246 21 133 3.66E-10 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily dqs_2224 eb23308d8940fd8cf4300913f32d892d 558 Pfam PF00437 Type II/IV secretion system protein 179 448 2.1E-74 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2224 eb23308d8940fd8cf4300913f32d892d 558 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 41 136 1.8E-9 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal dqs_2224 eb23308d8940fd8cf4300913f32d892d 558 SUPERFAMILY SSF52540 166 555 1.12E-96 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2224 eb23308d8940fd8cf4300913f32d892d 558 Gene3D G3DSA:3.30.450.90 147 277 4.2E-42 T 11-10-2018 dqs_0937 5db77a8b435b8014f6d4191bc4e16fa2 176 SUPERFAMILY SSF52833 8 174 2.5E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0937 5db77a8b435b8014f6d4191bc4e16fa2 176 ProSitePatterns PS00194 Thioredoxin family active site. 64 82 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_0937 5db77a8b435b8014f6d4191bc4e16fa2 176 Pfam PF00578 AhpC/TSA family 43 155 2.3E-24 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_0937 5db77a8b435b8014f6d4191bc4e16fa2 176 Gene3D G3DSA:3.40.30.10 29 176 1.4E-41 T 11-10-2018 dqs_1214 abd6d1880cc629accf59cc87da103b61 381 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 347 1.2E-124 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 dqs_1214 abd6d1880cc629accf59cc87da103b61 381 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 353 1.5E-123 T 11-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 dqs_1214 abd6d1880cc629accf59cc87da103b61 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 7.0E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 dqs_1214 abd6d1880cc629accf59cc87da103b61 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 7.0E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 dqs_1214 abd6d1880cc629accf59cc87da103b61 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 7.0E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 dqs_1214 abd6d1880cc629accf59cc87da103b61 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 7.0E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 dqs_1214 abd6d1880cc629accf59cc87da103b61 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 7.0E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 dqs_1214 abd6d1880cc629accf59cc87da103b61 381 Gene3D G3DSA:3.40.1690.10 217 357 1.5E-58 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal dqs_1214 abd6d1880cc629accf59cc87da103b61 381 SUPERFAMILY SSF160544 244 351 2.62E-41 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal dqs_1972 0ff7efdffe7145f87504deec66a2addb 244 Pfam PF02308 MgtC family 25 148 1.6E-36 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_1972 0ff7efdffe7145f87504deec66a2addb 244 PRINTS PR01837 MgtC/SapB protein signature 103 127 9.5E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_1972 0ff7efdffe7145f87504deec66a2addb 244 PRINTS PR01837 MgtC/SapB protein signature 47 65 9.5E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_1972 0ff7efdffe7145f87504deec66a2addb 244 PRINTS PR01837 MgtC/SapB protein signature 74 96 9.5E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_1972 0ff7efdffe7145f87504deec66a2addb 244 PRINTS PR01837 MgtC/SapB protein signature 28 47 9.5E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_1009 4a19f7f1384528c58616cea9ddd5e308 384 Pfam PF13393 Histidyl-tRNA synthetase 8 312 7.1E-117 T 11-10-2018 dqs_1009 4a19f7f1384528c58616cea9ddd5e308 384 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 15 363 32.823 T 11-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 dqs_1009 4a19f7f1384528c58616cea9ddd5e308 384 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 10 313 5.8E-85 T 11-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 dqs_1009 4a19f7f1384528c58616cea9ddd5e308 384 Gene3D G3DSA:3.30.930.10 3 320 4.2E-66 T 11-10-2018 dqs_1009 4a19f7f1384528c58616cea9ddd5e308 384 PIRSF PIRSF001549 1 324 2.8E-35 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 dqs_1009 4a19f7f1384528c58616cea9ddd5e308 384 SUPERFAMILY SSF55681 5 313 9.17E-59 T 11-10-2018 dqs_0431 8dccdef2ad9fe1b0b56a391bfcfe9762 224 TIGRFAM TIGR02796 tolQ: protein TolQ 8 221 4.2E-87 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 dqs_0431 8dccdef2ad9fe1b0b56a391bfcfe9762 224 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 7 224 39.858 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 dqs_0431 8dccdef2ad9fe1b0b56a391bfcfe9762 224 Pfam PF01618 MotA/TolQ/ExbB proton channel family 81 209 1.4E-41 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 Gene3D G3DSA:3.40.190.10 164 262 4.6E-55 T 11-10-2018 dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 Gene3D G3DSA:3.40.190.10 104 289 4.6E-55 T 11-10-2018 dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 2.9E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 Pfam PF03466 LysR substrate binding domain 94 293 1.4E-34 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 SUPERFAMILY SSF53850 96 297 1.48E-36 T 11-10-2018 dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 Gene3D G3DSA:1.10.10.10 6 89 4.1E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2080 507865d98094a9b51d8a8d0cf59e2e5c 314 SUPERFAMILY SSF46785 4 81 3.71E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3380 e3e238f071082f015cccee201918decb 141 Gene3D G3DSA:2.60.40.790 1 141 4.1E-35 T 11-10-2018 IPR008978 HSP20-like chaperone dqs_3380 e3e238f071082f015cccee201918decb 141 Pfam PF00011 Hsp20/alpha crystallin family 40 139 1.3E-19 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain dqs_3380 e3e238f071082f015cccee201918decb 141 SUPERFAMILY SSF49764 9 140 6.73E-38 T 11-10-2018 IPR008978 HSP20-like chaperone dqs_3313 8931d249f40422e2c216f90606e4625a 324 SUPERFAMILY SSF50129 13 139 1.22E-40 T 11-10-2018 IPR011032 GroES-like superfamily dqs_3313 8931d249f40422e2c216f90606e4625a 324 SUPERFAMILY SSF51735 112 288 1.52E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3313 8931d249f40422e2c216f90606e4625a 324 Pfam PF00107 Zinc-binding dehydrogenase 155 268 6.3E-10 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 dqs_3313 8931d249f40422e2c216f90606e4625a 324 Gene3D G3DSA:3.40.50.720 122 290 1.3E-117 T 11-10-2018 dqs_3313 8931d249f40422e2c216f90606e4625a 324 SMART SM00829 12 320 1.7E-7 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 dqs_3313 8931d249f40422e2c216f90606e4625a 324 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 322 4.5E-134 T 11-10-2018 IPR014188 Acrylyl-CoA reductase AcuI dqs_3313 8931d249f40422e2c216f90606e4625a 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 82 4.0E-6 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 dqs_3313 8931d249f40422e2c216f90606e4625a 324 Gene3D G3DSA:3.90.180.10 14 321 1.3E-117 T 11-10-2018 dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 SUPERFAMILY SSF54862 27 158 2.51E-20 T 11-10-2018 dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 3 153 1.4E-36 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 Pfam PF13187 4Fe-4S dicluster domain 32 78 1.9E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 Pfam PF12838 4Fe-4S dicluster domain 105 152 5.5E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 Gene3D G3DSA:3.30.70.20 29 95 2.9E-8 T 11-10-2018 dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 33 44 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 Gene3D G3DSA:3.30.70.20 96 157 1.8E-10 T 11-10-2018 dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 138 149 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_4087 90245e6c52f5d8ffce484deead96fae8 167 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 21 159 22.891 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 dqs_2060 b648a55766a0e75e65812c6f10dd43ec 266 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 19 244 39.867 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 dqs_2060 b648a55766a0e75e65812c6f10dd43ec 266 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 189 206 - T 11-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 dqs_2060 b648a55766a0e75e65812c6f10dd43ec 266 Pfam PF01255 Putative undecaprenyl diphosphate synthase 26 243 4.9E-79 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 dqs_2060 b648a55766a0e75e65812c6f10dd43ec 266 Gene3D G3DSA:3.40.1180.10 8 246 2.1E-90 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 dqs_2060 b648a55766a0e75e65812c6f10dd43ec 266 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 19 243 1.2E-86 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 dqs_2060 b648a55766a0e75e65812c6f10dd43ec 266 SUPERFAMILY SSF64005 17 239 7.06E-85 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 dqs_2970 f2ed9286b3d31dc8f60c04089ab70371 502 Gene3D G3DSA:3.40.50.300 1 236 3.7E-77 T 11-10-2018 dqs_2970 f2ed9286b3d31dc8f60c04089ab70371 502 Gene3D G3DSA:3.40.50.300 240 495 1.1E-102 T 11-10-2018 dqs_2970 f2ed9286b3d31dc8f60c04089ab70371 502 SUPERFAMILY SSF52540 301 489 7.14E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2970 f2ed9286b3d31dc8f60c04089ab70371 502 SUPERFAMILY SSF52540 43 226 1.33E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2970 f2ed9286b3d31dc8f60c04089ab70371 502 TIGRFAM TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase 2 493 1.1E-219 T 11-10-2018 IPR022489 Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 dqs_2970 f2ed9286b3d31dc8f60c04089ab70371 502 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 271 491 1.8E-88 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related dqs_2970 f2ed9286b3d31dc8f60c04089ab70371 502 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 12 233 9.3E-50 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related dqs_3858 acc359bc987f5339d3768e1acd66a3a4 175 Gene3D G3DSA:3.90.79.10 37 162 5.1E-20 T 11-10-2018 dqs_3858 acc359bc987f5339d3768e1acd66a3a4 175 Pfam PF00293 NUDIX domain 41 138 7.9E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 dqs_3858 acc359bc987f5339d3768e1acd66a3a4 175 Pfam PF14803 Nudix N-terminal 2 32 3.8E-7 T 11-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 dqs_3858 acc359bc987f5339d3768e1acd66a3a4 175 ProSitePatterns PS00893 Nudix box signature. 68 89 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 dqs_3858 acc359bc987f5339d3768e1acd66a3a4 175 SUPERFAMILY SSF55811 2 158 8.53E-27 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_1747 d2501876e95baa7aae1dc1e194671e4e 338 Pfam PF02504 Fatty acid synthesis protein 3 324 7.6E-107 T 11-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 dqs_1747 d2501876e95baa7aae1dc1e194671e4e 338 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 338 154.226 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 dqs_1747 d2501876e95baa7aae1dc1e194671e4e 338 Gene3D G3DSA:3.40.718.10 1 338 8.1E-129 T 11-10-2018 dqs_1747 d2501876e95baa7aae1dc1e194671e4e 338 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 5 333 1.5E-109 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 dqs_1747 d2501876e95baa7aae1dc1e194671e4e 338 SUPERFAMILY SSF53659 3 333 3.33E-105 T 11-10-2018 dqs_1747 d2501876e95baa7aae1dc1e194671e4e 338 PIRSF PIRSF002465 1 338 1.5E-128 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 dqs_1502 fe7f7e0d1a9a179c9696904ead29aedd 343 Gene3D G3DSA:3.90.870.10 5 212 3.6E-80 T 11-10-2018 dqs_1502 fe7f7e0d1a9a179c9696904ead29aedd 343 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 9 208 3.8E-57 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 dqs_1502 fe7f7e0d1a9a179c9696904ead29aedd 343 SUPERFAMILY SSF55821 10 210 1.56E-61 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily dqs_1502 fe7f7e0d1a9a179c9696904ead29aedd 343 Gene3D G3DSA:3.40.50.11030 218 341 1.0E-15 T 11-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily dqs_1502 fe7f7e0d1a9a179c9696904ead29aedd 343 Pfam PF03481 Putative GTP-binding controlling metal-binding 200 333 2.0E-18 T 11-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain dqs_1502 fe7f7e0d1a9a179c9696904ead29aedd 343 Pfam PF01300 Telomere recombination 19 198 2.4E-55 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 dqs_1502 fe7f7e0d1a9a179c9696904ead29aedd 343 PIRSF PIRSF004930 6 338 5.6E-106 T 11-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 dqs_3504 ad6df63ecee77eed8478e22a09536d31 281 SUPERFAMILY SSF51690 108 275 7.06E-38 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 dqs_3504 ad6df63ecee77eed8478e22a09536d31 281 SUPERFAMILY SSF54675 6 107 1.94E-19 T 11-10-2018 dqs_3504 ad6df63ecee77eed8478e22a09536d31 281 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 19 106 5.0E-20 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 dqs_3504 ad6df63ecee77eed8478e22a09536d31 281 Gene3D G3DSA:3.90.1170.20 13 271 1.3E-61 T 11-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 dqs_3504 ad6df63ecee77eed8478e22a09536d31 281 Gene3D G3DSA:3.20.20.70 124 269 1.3E-61 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3504 ad6df63ecee77eed8478e22a09536d31 281 PIRSF PIRSF006250 2 280 1.3E-61 T 11-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 dqs_3504 ad6df63ecee77eed8478e22a09536d31 281 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 108 270 2.1E-29 T 11-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 dqs_3504 ad6df63ecee77eed8478e22a09536d31 281 TIGRFAM TIGR01334 modD: modD protein 6 277 2.6E-72 T 11-10-2018 IPR006242 Putative pyrophosphorylase ModD GO:0016763 dqs_0122 6187187d8d24bcf6a32aef68195bffe8 298 SUPERFAMILY SSF46785 4 112 6.56E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0122 6187187d8d24bcf6a32aef68195bffe8 298 Gene3D G3DSA:1.10.10.10 2 88 7.1E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0122 6187187d8d24bcf6a32aef68195bffe8 298 Pfam PF03466 LysR substrate binding domain 90 290 1.2E-42 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0122 6187187d8d24bcf6a32aef68195bffe8 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 4.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0122 6187187d8d24bcf6a32aef68195bffe8 298 SUPERFAMILY SSF53850 90 294 2.9E-46 T 11-10-2018 dqs_0122 6187187d8d24bcf6a32aef68195bffe8 298 Gene3D G3DSA:3.40.190.290 91 289 1.0E-60 T 11-10-2018 dqs_2906 bdf1da6f344ce228d77c4fc79a024635 367 Gene3D G3DSA:3.20.20.70 153 291 1.1E-6 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2906 bdf1da6f344ce228d77c4fc79a024635 367 SUPERFAMILY SSF102114 61 277 2.09E-12 T 11-10-2018 dqs_2906 bdf1da6f344ce228d77c4fc79a024635 367 Pfam PF04055 Radical SAM superfamily 80 257 2.5E-12 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 dqs_2906 bdf1da6f344ce228d77c4fc79a024635 367 SMART SM00729 76 301 0.001 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 dqs_1103 c9a24060a4bcb2fd5c6d31e208a2b74d 258 SUPERFAMILY SSF81606 6 245 3.4E-48 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1103 c9a24060a4bcb2fd5c6d31e208a2b74d 258 Pfam PF13672 Protein phosphatase 2C 11 206 8.7E-11 T 11-10-2018 dqs_1103 c9a24060a4bcb2fd5c6d31e208a2b74d 258 SMART SM00331 21 245 1.8E-19 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1103 c9a24060a4bcb2fd5c6d31e208a2b74d 258 Gene3D G3DSA:3.60.40.10 2 248 2.8E-50 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_1103 c9a24060a4bcb2fd5c6d31e208a2b74d 258 SMART SM00332 1 243 5.3E-15 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 dqs_0324 f83b8c649073619f169ffbd10b0514a0 381 SUPERFAMILY SSF53822 22 380 5.07E-76 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_0324 f83b8c649073619f169ffbd10b0514a0 381 Gene3D G3DSA:3.40.50.2300 25 363 2.2E-119 T 11-10-2018 dqs_0324 f83b8c649073619f169ffbd10b0514a0 381 Pfam PF13458 Periplasmic binding protein 24 375 4.6E-51 T 11-10-2018 IPR028081 Leucine-binding protein domain dqs_0324 f83b8c649073619f169ffbd10b0514a0 381 Gene3D G3DSA:3.40.50.2300 140 372 2.2E-119 T 11-10-2018 dqs_1534 3e44c43b9fd042dd9586b99ef900321d 183 Pfam PF00293 NUDIX domain 49 157 5.5E-15 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 dqs_1534 3e44c43b9fd042dd9586b99ef900321d 183 ProSitePatterns PS00893 Nudix box signature. 82 103 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 dqs_1534 3e44c43b9fd042dd9586b99ef900321d 183 Gene3D G3DSA:3.90.79.10 11 181 4.1E-55 T 11-10-2018 dqs_1534 3e44c43b9fd042dd9586b99ef900321d 183 SUPERFAMILY SSF55811 12 182 8.26E-48 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 SUPERFAMILY SSF51735 5 248 6.43E-67 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 7.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 7.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 7.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2092 042163beba75f04b9986508e10b8375f 262 Gene3D G3DSA:3.40.50.720 1 254 2.5E-70 T 11-10-2018 dqs_2092 042163beba75f04b9986508e10b8375f 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_2092 042163beba75f04b9986508e10b8375f 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 246 9.3E-56 T 11-10-2018 dqs_2285 16741b5e2e63eefc7cd9707b27006206 345 Pfam PF04338 Protein of unknown function, DUF481 134 345 1.6E-46 T 11-10-2018 IPR007433 Protein of unknown function DUF481 dqs_0293 dc4d6f4acf38416a4814b98419df4c43 734 Gene3D G3DSA:1.20.120.20 342 481 1.9E-5 T 11-10-2018 dqs_0293 dc4d6f4acf38416a4814b98419df4c43 734 Pfam PF05650 Domain of unknown function (DUF802) 415 467 1.9E-16 T 11-10-2018 IPR008520 Domain of unknown function DUF802 dqs_0293 dc4d6f4acf38416a4814b98419df4c43 734 Pfam PF05650 Domain of unknown function (DUF802) 322 372 6.3E-13 T 11-10-2018 IPR008520 Domain of unknown function DUF802 dqs_1378 07290a1887ce08f61218d156635927d5 70 Gene3D G3DSA:3.30.1660.10 2 70 1.6E-35 T 11-10-2018 IPR025543 Dodecin-like dqs_1378 07290a1887ce08f61218d156635927d5 70 Pfam PF07311 Dodecin 5 68 6.9E-31 T 11-10-2018 IPR009923 Dodecin dqs_1378 07290a1887ce08f61218d156635927d5 70 SUPERFAMILY SSF89807 3 68 1.18E-26 T 11-10-2018 IPR036694 Dodecin-like superfamily dqs_2273 52afa8d5c941a3d58544dccb658dbc77 101 SUPERFAMILY SSF141488 28 96 8.11E-5 T 11-10-2018 IPR036328 C-type lysozyme inhibitor superfamily dqs_2966 e4edaecc8149e6a31c46db3ab4c50759 237 Pfam PF01895 PhoU domain 132 212 1.1E-15 T 11-10-2018 IPR026022 PhoU domain dqs_2966 e4edaecc8149e6a31c46db3ab4c50759 237 Pfam PF01895 PhoU domain 24 110 7.2E-19 T 11-10-2018 IPR026022 PhoU domain dqs_2966 e4edaecc8149e6a31c46db3ab4c50759 237 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 10 220 8.3E-69 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 dqs_2966 e4edaecc8149e6a31c46db3ab4c50759 237 PIRSF PIRSF003107 5 226 4.7E-60 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 dqs_2966 e4edaecc8149e6a31c46db3ab4c50759 237 Gene3D G3DSA:1.20.58.220 1 118 6.7E-38 T 11-10-2018 IPR038078 PhoU-like domain superfamily dqs_2966 e4edaecc8149e6a31c46db3ab4c50759 237 SUPERFAMILY SSF109755 10 223 8.79E-68 T 11-10-2018 dqs_2966 e4edaecc8149e6a31c46db3ab4c50759 237 Gene3D G3DSA:1.20.58.220 119 235 1.2E-31 T 11-10-2018 IPR038078 PhoU-like domain superfamily dqs_3780 7cf3e28b30696d2492d9814b46e4d9e9 146 Pfam PF00583 Acetyltransferase (GNAT) family 40 130 5.2E-10 T 11-10-2018 IPR000182 GNAT domain dqs_3780 7cf3e28b30696d2492d9814b46e4d9e9 146 SUPERFAMILY SSF55729 11 135 1.66E-18 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3780 7cf3e28b30696d2492d9814b46e4d9e9 146 Gene3D G3DSA:3.40.630.30 2 141 8.7E-19 T 11-10-2018 dqs_1576 67b85eacfe1d2e9aca7e02371584e7e4 169 Gene3D G3DSA:2.40.50.180 39 148 3.6E-37 T 11-10-2018 dqs_1576 67b85eacfe1d2e9aca7e02371584e7e4 169 Gene3D G3DSA:2.30.30.40 22 147 3.6E-37 T 11-10-2018 dqs_1576 67b85eacfe1d2e9aca7e02371584e7e4 169 Pfam PF01584 CheW-like domain 20 155 4.9E-35 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_1576 67b85eacfe1d2e9aca7e02371584e7e4 169 SUPERFAMILY SSF50341 20 157 7.19E-38 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_1576 67b85eacfe1d2e9aca7e02371584e7e4 169 SMART SM00260 16 153 1.0E-40 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_2855 40a4302e970122c731b0ffda0d699b6e 150 Pfam PF02050 Flagellar FliJ protein 19 142 1.1E-33 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 dqs_2855 40a4302e970122c731b0ffda0d699b6e 150 PIRSF PIRSF019404 1 148 2.2E-52 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 dqs_2855 40a4302e970122c731b0ffda0d699b6e 150 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 4 143 1.4E-31 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 dqs_2855 40a4302e970122c731b0ffda0d699b6e 150 PRINTS PR01004 Flagellar FliJ protein signature 63 84 2.4E-9 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 dqs_2855 40a4302e970122c731b0ffda0d699b6e 150 PRINTS PR01004 Flagellar FliJ protein signature 126 146 2.4E-9 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 dqs_2855 40a4302e970122c731b0ffda0d699b6e 150 PRINTS PR01004 Flagellar FliJ protein signature 108 126 2.4E-9 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 dqs_2855 40a4302e970122c731b0ffda0d699b6e 150 PRINTS PR01004 Flagellar FliJ protein signature 44 61 2.4E-9 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 dqs_2855 40a4302e970122c731b0ffda0d699b6e 150 PRINTS PR01004 Flagellar FliJ protein signature 4 26 2.4E-9 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 dqs_3805 84b091bfc8507c4afc588869e36f25be 257 Gene3D G3DSA:3.30.1600.10 34 173 4.8E-65 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily dqs_3805 84b091bfc8507c4afc588869e36f25be 257 Pfam PF02146 Sir2 family 25 199 1.5E-40 T 11-10-2018 IPR003000 Sirtuin family GO:0070403 dqs_3805 84b091bfc8507c4afc588869e36f25be 257 Gene3D G3DSA:3.40.50.1220 16 247 4.8E-65 T 11-10-2018 dqs_3805 84b091bfc8507c4afc588869e36f25be 257 SUPERFAMILY SSF52467 5 252 1.14E-71 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily dqs_3814 e320c6046a969db62f7a015c9d5c8663 123 Pfam PF13997 YqjK-like protein 15 88 2.6E-20 T 11-10-2018 IPR025612 YqjK-like protein dqs_2815 beccca5206dc0bd4959fbbbb0208fb18 351 Gene3D G3DSA:1.10.760.10 180 302 1.0E-34 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2815 beccca5206dc0bd4959fbbbb0208fb18 351 SUPERFAMILY SSF46626 182 285 2.22E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2815 beccca5206dc0bd4959fbbbb0208fb18 351 SUPERFAMILY SSF46626 86 173 1.55E-22 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2815 beccca5206dc0bd4959fbbbb0208fb18 351 Gene3D G3DSA:1.10.760.10 44 178 2.7E-38 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2815 beccca5206dc0bd4959fbbbb0208fb18 351 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 190 279 3.4E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1202 9874a5e8871c46840862f89ccf3abed2 659 SUPERFAMILY SSF54001 283 605 2.94E-59 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_1202 9874a5e8871c46840862f89ccf3abed2 659 Gene3D G3DSA:3.10.620.30 352 497 1.7E-19 T 11-10-2018 dqs_1202 9874a5e8871c46840862f89ccf3abed2 659 Pfam PF13559 Domain of unknown function (DUF4129) 586 651 1.9E-10 T 11-10-2018 IPR025403 Domain of unknown function DUF4129 dqs_1202 9874a5e8871c46840862f89ccf3abed2 659 SMART SM00460 408 479 4.5E-22 T 11-10-2018 IPR002931 Transglutaminase-like dqs_1202 9874a5e8871c46840862f89ccf3abed2 659 Pfam PF11992 Domain of unknown function (DUF3488) 25 333 4.6E-100 T 11-10-2018 IPR021878 Protein of unknown function DUF3488 dqs_1202 9874a5e8871c46840862f89ccf3abed2 659 Pfam PF01841 Transglutaminase-like superfamily 361 477 5.3E-25 T 11-10-2018 IPR002931 Transglutaminase-like dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 61 68 - T 11-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 Pfam PF00255 Glutathione peroxidase 5 112 5.7E-41 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 11-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 PIRSF PIRSF000303 1 163 8.0E-68 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 SUPERFAMILY SSF52833 4 160 6.67E-63 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 PRINTS PR01011 Glutathione peroxidase family signature 23 40 1.6E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 PRINTS PR01011 Glutathione peroxidase family signature 124 133 1.6E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 PRINTS PR01011 Glutathione peroxidase family signature 58 74 1.6E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 dqs_1392 70dc9ae77e7f8650cc40e9e5a743bcca 163 Gene3D G3DSA:3.40.30.10 1 163 1.6E-69 T 11-10-2018 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.4E-46 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 SMART SM00878 336 443 5.3E-58 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 SUPERFAMILY SSF56059 83 348 4.42E-67 T 11-10-2018 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 Gene3D G3DSA:3.30.470.130 1 444 8.4E-203 T 11-10-2018 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 Gene3D G3DSA:3.30.700.40 445 544 4.9E-6 T 11-10-2018 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 Pfam PF02785 Biotin carboxylase C-terminal domain 336 444 9.3E-38 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 Gene3D G3DSA:2.40.50.100 598 663 5.3E-21 T 11-10-2018 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 SUPERFAMILY SSF51246 331 448 3.4E-40 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 SUPERFAMILY SSF51230 591 663 9.16E-18 T 11-10-2018 IPR011053 Single hybrid motif dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 Pfam PF00364 Biotin-requiring enzyme 599 661 7.6E-14 T 11-10-2018 IPR000089 Biotin/lipoyl attachment dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 SUPERFAMILY SSF52440 1 113 9.35E-51 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily dqs_3202 52a5b70c851b8b5c0977cda97a664ae0 666 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 2.4E-77 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 dqs_3343 00cb04589ec091345864cf30c97d68e1 685 Pfam PF00884 Sulfatase 305 583 1.9E-47 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 dqs_3343 00cb04589ec091345864cf30c97d68e1 685 PIRSF PIRSF005091 20 682 1.2E-122 T 11-10-2018 IPR012160 Lipoteichoic acid synthase-like dqs_3343 00cb04589ec091345864cf30c97d68e1 685 SUPERFAMILY SSF53649 305 650 7.27E-62 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 dqs_3343 00cb04589ec091345864cf30c97d68e1 685 Gene3D G3DSA:3.40.720.10 303 590 5.7E-53 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 dqs_0299 fae4c86e0c2677534455ad261d9515a5 412 Pfam PF12698 ABC-2 family transporter protein 32 408 9.8E-28 T 11-10-2018 dqs_3679 7ab7c8bcef87db44cf549262c67f76eb 133 SUPERFAMILY SSF159664 2 132 1.7E-36 T 11-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 dqs_3679 7ab7c8bcef87db44cf549262c67f76eb 133 Pfam PF01890 Cobalamin synthesis G C-terminus 3 129 3.8E-37 T 11-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 dqs_3679 7ab7c8bcef87db44cf549262c67f76eb 133 Gene3D G3DSA:3.30.420.180 1 133 1.3E-40 T 11-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 dqs_1197 33b765149ca11e98a9a1746e1db9a8c8 247 SUPERFAMILY SSF64167 1 245 2.09E-85 T 11-10-2018 dqs_1197 33b765149ca11e98a9a1746e1db9a8c8 247 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 233 1.3E-70 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 dqs_1197 33b765149ca11e98a9a1746e1db9a8c8 247 Gene3D G3DSA:3.40.1210.10 1 247 8.0E-93 T 11-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 dqs_1197 33b765149ca11e98a9a1746e1db9a8c8 247 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 247 39.489 T 11-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 dqs_1197 33b765149ca11e98a9a1746e1db9a8c8 247 Pfam PF01975 Survival protein SurE 3 182 1.4E-59 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 dqs_2565 8717604a493318950e219d8de7aa153e 236 SUPERFAMILY SSF56529 23 232 7.72E-63 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2565 8717604a493318950e219d8de7aa153e 236 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 29 229 3.0E-48 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 dqs_2565 8717604a493318950e219d8de7aa153e 236 Gene3D G3DSA:3.90.850.10 2 235 3.4E-78 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_3658 9f3db7eed25d64f06c8e1bea0bdba044 136 SMART SM00418 29 109 6.7E-4 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 dqs_3658 9f3db7eed25d64f06c8e1bea0bdba044 136 Pfam PF01638 HxlR-like helix-turn-helix 34 120 3.3E-27 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type dqs_3658 9f3db7eed25d64f06c8e1bea0bdba044 136 SUPERFAMILY SSF46785 19 130 5.54E-35 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_3658 9f3db7eed25d64f06c8e1bea0bdba044 136 Gene3D G3DSA:1.10.10.10 12 133 9.6E-44 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_1509 f52c81116d47e57553dd5495f153831d 205 Gene3D G3DSA:3.40.50.150 27 205 8.2E-62 T 11-10-2018 dqs_1509 f52c81116d47e57553dd5495f153831d 205 PIRSF PIRSF005461 1 205 7.7E-78 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 dqs_1509 f52c81116d47e57553dd5495f153831d 205 Pfam PF01728 FtsJ-like methyltransferase 28 201 1.5E-57 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 dqs_1509 f52c81116d47e57553dd5495f153831d 205 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 12 205 31.684 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 dqs_1509 f52c81116d47e57553dd5495f153831d 205 SUPERFAMILY SSF53335 27 203 5.21E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0370 d201e809b9a504024364926fc6e02b73 94 Pfam PF13223 Protein of unknown function (DUF4031) 2 79 8.0E-29 T 11-10-2018 IPR025109 Domain of unknown function DUF4031 dqs_0104 44864bef4280cf858601586ba00d76a1 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0104 44864bef4280cf858601586ba00d76a1 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0104 44864bef4280cf858601586ba00d76a1 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0104 44864bef4280cf858601586ba00d76a1 312 Gene3D G3DSA:3.40.190.10 92 289 3.3E-75 T 11-10-2018 dqs_0104 44864bef4280cf858601586ba00d76a1 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.4E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0104 44864bef4280cf858601586ba00d76a1 312 SUPERFAMILY SSF53850 88 295 1.55E-39 T 11-10-2018 dqs_0104 44864bef4280cf858601586ba00d76a1 312 Gene3D G3DSA:3.40.190.10 161 267 3.3E-75 T 11-10-2018 dqs_0104 44864bef4280cf858601586ba00d76a1 312 Gene3D G3DSA:1.10.10.10 1 85 6.6E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0104 44864bef4280cf858601586ba00d76a1 312 SUPERFAMILY SSF46785 1 111 7.43E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0104 44864bef4280cf858601586ba00d76a1 312 Pfam PF03466 LysR substrate binding domain 88 294 3.0E-46 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_3651 5aecb82408842cd62ef3e08ce0d762ae 285 Hamap MF_01384 Urease accessory protein UreD [ureD]. 17 269 28.565 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 dqs_3651 5aecb82408842cd62ef3e08ce0d762ae 285 Pfam PF01774 UreD urease accessory protein 60 258 1.6E-40 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 dqs_2994 3ae163b3f66e450671e1bf9ea2963015 248 Pfam PF09836 Putative DNA-binding domain 9 95 4.5E-21 T 11-10-2018 IPR018640 Putative DNA-binding domain, bacteria dqs_2994 3ae163b3f66e450671e1bf9ea2963015 248 Gene3D G3DSA:1.10.150.690 35 123 1.6E-27 T 11-10-2018 dqs_2435 e00f2f838f08d0140baba268ae87d516 606 Gene3D G3DSA:3.40.50.300 328 604 7.1E-103 T 11-10-2018 dqs_2435 e00f2f838f08d0140baba268ae87d516 606 SMART SM00382 353 474 2.1E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_2435 e00f2f838f08d0140baba268ae87d516 606 SUPERFAMILY SSF52540 215 599 1.57E-94 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2435 e00f2f838f08d0140baba268ae87d516 606 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 420 434 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2435 e00f2f838f08d0140baba268ae87d516 606 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 79 182 5.0E-13 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal dqs_2435 e00f2f838f08d0140baba268ae87d516 606 SUPERFAMILY SSF160246 59 177 3.66E-15 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily dqs_2435 e00f2f838f08d0140baba268ae87d516 606 Pfam PF00437 Type II/IV secretion system protein 231 492 6.5E-77 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_2435 e00f2f838f08d0140baba268ae87d516 606 Gene3D G3DSA:3.30.450.90 196 325 4.1E-41 T 11-10-2018 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 SMART SM00382 37 179 1.4E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 Gene3D G3DSA:1.10.8.60 8 240 1.1E-103 T 11-10-2018 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 Gene3D G3DSA:3.40.50.300 13 177 1.1E-103 T 11-10-2018 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 Gene3D G3DSA:1.20.272.10 242 361 7.0E-35 T 11-10-2018 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 533 659 8.4E-13 T 11-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 SUPERFAMILY SSF52540 32 223 1.81E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 359 4.5E-23 T 11-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 Gene3D G3DSA:3.30.300.150 521 644 1.1E-11 T 11-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 SUPERFAMILY SSF48019 243 363 3.06E-27 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 354 3.8E-128 T 11-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 dqs_1031 40da35fe1b3439fcc69c77f58a18bab7 662 Pfam PF13177 DNA polymerase III, delta subunit 20 178 4.3E-42 T 11-10-2018 dqs_0196 fbcbf8859bb183405be53c138c861a5f 153 SUPERFAMILY SSF46626 65 140 2.29E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_0196 fbcbf8859bb183405be53c138c861a5f 153 PRINTS PR00607 Class IE cytochrome C signature 113 125 3.2E-15 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 dqs_0196 fbcbf8859bb183405be53c138c861a5f 153 PRINTS PR00607 Class IE cytochrome C signature 74 85 3.2E-15 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 dqs_0196 fbcbf8859bb183405be53c138c861a5f 153 PRINTS PR00607 Class IE cytochrome C signature 85 95 3.2E-15 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 dqs_0196 fbcbf8859bb183405be53c138c861a5f 153 PRINTS PR00607 Class IE cytochrome C signature 128 139 3.2E-15 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 dqs_0196 fbcbf8859bb183405be53c138c861a5f 153 Gene3D G3DSA:1.10.760.10 63 141 2.7E-29 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_0196 fbcbf8859bb183405be53c138c861a5f 153 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 65 138 1.1E-14 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2589 712e8fc970f29a61dee2cfd2fdeb109d 105 Gene3D G3DSA:3.10.20.30 4 98 4.2E-22 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_2589 712e8fc970f29a61dee2cfd2fdeb109d 105 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_2589 712e8fc970f29a61dee2cfd2fdeb109d 105 SUPERFAMILY SSF54292 4 92 1.97E-22 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_2589 712e8fc970f29a61dee2cfd2fdeb109d 105 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 84 2.6E-16 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_1854 9cf4debba0f0fb8dcd411116c8872aca 97 SUPERFAMILY SSF82657 3 88 5.23E-25 T 11-10-2018 IPR036065 BolA-like superfamily dqs_1854 9cf4debba0f0fb8dcd411116c8872aca 97 Pfam PF01722 BolA-like protein 11 86 1.6E-28 T 11-10-2018 IPR002634 BolA protein dqs_1854 9cf4debba0f0fb8dcd411116c8872aca 97 Gene3D G3DSA:3.30.300.90 2 90 4.5E-29 T 11-10-2018 dqs_1854 9cf4debba0f0fb8dcd411116c8872aca 97 PIRSF PIRSF003113 1 97 1.7E-28 T 11-10-2018 IPR002634 BolA protein dqs_2035 2a5a9cbae4632b105926ee8bf504d4e2 377 Gene3D G3DSA:2.40.370.10 50 235 4.1E-70 T 11-10-2018 IPR023374 AttH-like domain superfamily dqs_2035 2a5a9cbae4632b105926ee8bf504d4e2 377 SUPERFAMILY SSF159245 39 371 5.49E-110 T 11-10-2018 dqs_2035 2a5a9cbae4632b105926ee8bf504d4e2 377 Gene3D G3DSA:2.40.370.10 236 377 3.6E-46 T 11-10-2018 IPR023374 AttH-like domain superfamily dqs_2035 2a5a9cbae4632b105926ee8bf504d4e2 377 Pfam PF07143 CrtC N-terminal lipocalin domain 62 232 9.3E-53 T 11-10-2018 IPR010791 AttH domain dqs_2035 2a5a9cbae4632b105926ee8bf504d4e2 377 Pfam PF17186 Lipocalin-like domain 237 371 3.2E-41 T 11-10-2018 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Pfam PF13414 TPR repeat 86 127 1.2E-8 T 11-10-2018 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Pfam PF13844 Glycosyl transferase family 41 406 552 3.3E-33 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Pfam PF13844 Glycosyl transferase family 41 566 758 4.9E-41 T 11-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Gene3D G3DSA:1.25.40.10 191 352 4.2E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Gene3D G3DSA:1.25.40.10 14 190 8.0E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 SMART SM00028 285 318 0.28 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 SMART SM00028 113 146 0.028 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 SMART SM00028 251 284 0.012 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 SMART SM00028 79 112 2.8E-7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 SMART SM00028 45 78 100.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 SMART SM00028 217 250 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Gene3D G3DSA:3.40.50.11380 397 748 1.2E-132 T 11-10-2018 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Pfam PF13432 Tetratricopeptide repeat 256 308 0.0012 T 11-10-2018 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Pfam PF13432 Tetratricopeptide repeat 20 79 7.7E-4 T 11-10-2018 dqs_2838 7125628bd6b17c83114f9c015031c384 774 SUPERFAMILY SSF48452 23 307 1.47E-31 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_2838 7125628bd6b17c83114f9c015031c384 774 Gene3D G3DSA:3.40.50.2000 563 741 1.2E-132 T 11-10-2018 dqs_1263 585b4358de7b80039d65bf2a399ee8aa 120 Pfam PF03788 LrgA family 12 104 5.9E-29 T 11-10-2018 IPR005538 LrgA/CidA family GO:0016021 dqs_3815 cdffe2220fde9b17daaefb13951c3ebe 185 Pfam PF00156 Phosphoribosyl transferase domain 19 144 2.7E-21 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 dqs_3815 cdffe2220fde9b17daaefb13951c3ebe 185 Gene3D G3DSA:3.40.50.2020 3 184 4.8E-47 T 11-10-2018 dqs_3815 cdffe2220fde9b17daaefb13951c3ebe 185 SUPERFAMILY SSF53271 15 183 1.57E-42 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 SUPERFAMILY SSF56420 3 163 2.09E-62 T 11-10-2018 IPR036821 Peptide deformylase superfamily dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 Pfam PF01327 Polypeptide deformylase 5 151 3.0E-50 T 11-10-2018 IPR023635 Peptide deformylase dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.418 T 11-10-2018 IPR023635 Peptide deformylase dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 159 8.2E-56 T 11-10-2018 IPR023635 Peptide deformylase dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 Gene3D G3DSA:3.90.45.10 1 166 1.8E-62 T 11-10-2018 IPR036821 Peptide deformylase superfamily dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 PRINTS PR01576 Peptide deformylase signature 101 119 1.1E-38 T 11-10-2018 IPR023635 Peptide deformylase dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 PRINTS PR01576 Peptide deformylase signature 120 149 1.1E-38 T 11-10-2018 IPR023635 Peptide deformylase dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 PRINTS PR01576 Peptide deformylase signature 89 100 1.1E-38 T 11-10-2018 IPR023635 Peptide deformylase dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 PRINTS PR01576 Peptide deformylase signature 33 62 1.1E-38 T 11-10-2018 IPR023635 Peptide deformylase dqs_0109 e12c27ac0daf7c17aa0317f23eebda42 167 PIRSF PIRSF004749 1 166 1.2E-55 T 11-10-2018 IPR023635 Peptide deformylase dqs_2168 df5712c200a21c22b680c1d4ffd92f9e 177 SUPERFAMILY SSF47144 87 175 4.32E-25 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_2168 df5712c200a21c22b680c1d4ffd92f9e 177 Gene3D G3DSA:1.10.287.110 2 79 1.5E-20 T 11-10-2018 IPR036869 Chaperone J-domain superfamily dqs_2168 df5712c200a21c22b680c1d4ffd92f9e 177 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 19 173 8.9E-29 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_2168 df5712c200a21c22b680c1d4ffd92f9e 177 SUPERFAMILY SSF46565 8 80 1.07E-14 T 11-10-2018 IPR036869 Chaperone J-domain superfamily dqs_2168 df5712c200a21c22b680c1d4ffd92f9e 177 Pfam PF07743 HSCB C-terminal oligomerisation domain 93 169 4.0E-22 T 11-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_2168 df5712c200a21c22b680c1d4ffd92f9e 177 Gene3D G3DSA:1.20.1280.20 87 177 2.2E-24 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_2168 df5712c200a21c22b680c1d4ffd92f9e 177 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 7 176 23.578 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 dqs_2472 e0a54ca913cf5879f63e855a68b66df1 226 Gene3D G3DSA:1.10.760.10 46 117 1.6E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2472 e0a54ca913cf5879f63e855a68b66df1 226 SUPERFAMILY SSF46626 132 225 1.17E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2472 e0a54ca913cf5879f63e855a68b66df1 226 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 40 112 6.3E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2472 e0a54ca913cf5879f63e855a68b66df1 226 SUPERFAMILY SSF46626 37 115 5.64E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2472 e0a54ca913cf5879f63e855a68b66df1 226 Gene3D G3DSA:1.10.760.10 133 226 1.5E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2472 e0a54ca913cf5879f63e855a68b66df1 226 PIRSF PIRSF000005 7 226 1.3E-55 T 11-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 dqs_2472 e0a54ca913cf5879f63e855a68b66df1 226 Pfam PF00034 Cytochrome c 154 224 4.0E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_0286 750d3586a63907c14154a06bf9ade6ce 208 Pfam PF08281 Sigma-70, region 4 128 179 2.6E-11 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 dqs_0286 750d3586a63907c14154a06bf9ade6ce 208 Gene3D G3DSA:1.10.10.10 115 186 4.0E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0286 750d3586a63907c14154a06bf9ade6ce 208 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 182 3.4E-26 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 dqs_0286 750d3586a63907c14154a06bf9ade6ce 208 SUPERFAMILY SSF88659 101 184 5.79E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like dqs_0286 750d3586a63907c14154a06bf9ade6ce 208 SUPERFAMILY SSF88946 14 98 3.3E-23 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 dqs_0286 750d3586a63907c14154a06bf9ade6ce 208 Gene3D G3DSA:1.10.1740.10 10 114 1.9E-22 T 11-10-2018 dqs_0286 750d3586a63907c14154a06bf9ade6ce 208 Pfam PF04542 Sigma-70 region 2 32 98 5.4E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 dqs_2646 c4fb2587093d0392d8cf5ae1e94bb1bb 177 Pfam PF01575 MaoC like domain 22 123 1.3E-19 T 11-10-2018 IPR002539 MaoC-like dehydratase domain dqs_2646 c4fb2587093d0392d8cf5ae1e94bb1bb 177 Gene3D G3DSA:3.10.129.10 11 160 3.0E-40 T 11-10-2018 dqs_2646 c4fb2587093d0392d8cf5ae1e94bb1bb 177 SUPERFAMILY SSF54637 22 161 1.22E-30 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_0124 517464be64f003cf2d0526beec51bdcd 332 Gene3D G3DSA:2.30.110.10 175 311 3.3E-6 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_0124 517464be64f003cf2d0526beec51bdcd 332 Gene3D G3DSA:2.30.110.10 42 161 1.9E-7 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_0124 517464be64f003cf2d0526beec51bdcd 332 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 42 131 1.5E-8 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 dqs_0124 517464be64f003cf2d0526beec51bdcd 332 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 175 285 8.3E-8 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 dqs_0124 517464be64f003cf2d0526beec51bdcd 332 SUPERFAMILY SSF50475 175 299 3.14E-7 T 11-10-2018 dqs_0124 517464be64f003cf2d0526beec51bdcd 332 SUPERFAMILY SSF50475 42 133 9.24E-7 T 11-10-2018 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 Gene3D G3DSA:3.40.50.720 6 262 9.1E-110 T 11-10-2018 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 263 271 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 Gene3D G3DSA:3.40.50.10860 8 279 9.1E-110 T 11-10-2018 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 285 8.1E-72 T 11-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 SUPERFAMILY SSF53223 1 121 2.88E-36 T 11-10-2018 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 286 38.237 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 4.8E-37 T 11-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 7.5E-79 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 7.5E-79 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 7.5E-79 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 7.5E-79 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 242 258 7.5E-79 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 259 277 7.5E-79 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 7.5E-79 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 dqs_1499 ac2f16bf274e2513a5cda1e29151d05b 291 SUPERFAMILY SSF51735 122 284 7.74E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2574 04829d09a71932f053d3a01476fdb66f 262 Gene3D G3DSA:3.90.850.10 1 261 2.0E-76 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2574 04829d09a71932f053d3a01476fdb66f 262 SUPERFAMILY SSF56529 3 261 4.12E-73 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 dqs_2574 04829d09a71932f053d3a01476fdb66f 262 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 104 261 8.0E-7 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 dqs_2574 04829d09a71932f053d3a01476fdb66f 262 TIGRFAM TIGR03218 catechol_dmpH: 4-oxalocrotonate decarboxylase 1 261 3.2E-146 T 11-10-2018 IPR017630 4-oxalocrotonate decarboxylase KEGG: 00362+4.1.1.77|KEGG: 00621+4.1.1.77|KEGG: 00622+4.1.1.77|MetaCyc: PWY-5419|MetaCyc: PWY-5644|MetaCyc: PWY-5645|MetaCyc: PWY-5647|MetaCyc: PWY-5654|MetaCyc: PWY-6210|MetaCyc: PWY-6214|MetaCyc: PWY-6336|MetaCyc: PWY-7006|MetaCyc: PWY-7009|MetaCyc: PWY-7480 dqs_2079 991eae278de08047e451321144309959 395 Gene3D G3DSA:2.40.110.10 136 240 1.3E-35 T 11-10-2018 dqs_2079 991eae278de08047e451321144309959 395 SUPERFAMILY SSF47203 240 389 6.93E-44 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_2079 991eae278de08047e451321144309959 395 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 241 387 7.1E-30 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_2079 991eae278de08047e451321144309959 395 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 137 228 1.8E-20 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 dqs_2079 991eae278de08047e451321144309959 395 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 21 133 3.8E-36 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 dqs_2079 991eae278de08047e451321144309959 395 Gene3D G3DSA:1.20.140.10 242 395 3.5E-44 T 11-10-2018 dqs_2079 991eae278de08047e451321144309959 395 Gene3D G3DSA:1.10.540.10 3 135 5.0E-44 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_2079 991eae278de08047e451321144309959 395 SUPERFAMILY SSF56645 8 239 1.57E-76 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_2079 991eae278de08047e451321144309959 395 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 346 365 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 dqs_3723 248a40744b6849eff2bf1a7ec322964b 687 Pfam PF01757 Acyltransferase family 11 336 3.8E-25 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 dqs_0586 94bdd6a75aaa45d0c6ccbbaa0681419a 239 Pfam PF13401 AAA domain 29 138 2.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0586 94bdd6a75aaa45d0c6ccbbaa0681419a 239 Gene3D G3DSA:3.40.50.300 3 160 7.6E-9 T 11-10-2018 dqs_0586 94bdd6a75aaa45d0c6ccbbaa0681419a 239 SUPERFAMILY SSF52540 25 220 2.34E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3894 3a14003c51ed0ca49d5e48b7206d3697 203 Pfam PF00702 haloacid dehalogenase-like hydrolase 69 163 9.2E-9 T 11-10-2018 dqs_3894 3a14003c51ed0ca49d5e48b7206d3697 203 SUPERFAMILY SSF56784 2 198 4.41E-41 T 11-10-2018 IPR036412 HAD-like superfamily dqs_3894 3a14003c51ed0ca49d5e48b7206d3697 203 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 2 198 4.9E-89 T 11-10-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 dqs_3894 3a14003c51ed0ca49d5e48b7206d3697 203 Gene3D G3DSA:3.90.1470.10 13 128 4.6E-76 T 11-10-2018 dqs_3894 3a14003c51ed0ca49d5e48b7206d3697 203 Gene3D G3DSA:3.40.50.1000 3 191 4.6E-76 T 11-10-2018 IPR023214 HAD superfamily dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 PIRSF PIRSF016578 12 99 1.0E-4 T 11-10-2018 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 PIRSF PIRSF016578 139 390 3.0E-10 T 11-10-2018 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 385 2.0E-38 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 Gene3D G3DSA:1.20.140.10 240 390 7.1E-42 T 11-10-2018 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 123 4.0E-37 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 1.2E-24 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 SUPERFAMILY SSF47203 233 386 5.8E-42 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 SUPERFAMILY SSF56645 5 247 5.5E-86 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 Gene3D G3DSA:1.10.540.10 2 125 1.4E-48 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_3216 c21f657ad6f5e273146cc8489f187f5c 390 Gene3D G3DSA:2.40.110.10 126 239 3.6E-44 T 11-10-2018 dqs_1423 ae4786d31c6ec48ddeed13610214a1dd 174 PIRSF PIRSF028301 1 173 7.8E-62 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 dqs_1423 ae4786d31c6ec48ddeed13610214a1dd 174 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 7 164 1.4E-55 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 dqs_1423 ae4786d31c6ec48ddeed13610214a1dd 174 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 11 163 9.8E-57 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 dqs_4034 659c0a5821be8e03a93d44a4f3074194 1190 Pfam PF06761 Intracellular multiplication and human macrophage-killing 517 824 1.6E-90 T 11-10-2018 IPR009612 ImcF-related dqs_4034 659c0a5821be8e03a93d44a4f3074194 1190 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 15 1188 0.0 T 11-10-2018 IPR017731 Type VI secretion system, IcmF dqs_4034 659c0a5821be8e03a93d44a4f3074194 1190 Pfam PF06744 Type VI secretion protein IcmF C-terminal 942 1138 1.8E-57 T 11-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal dqs_4034 659c0a5821be8e03a93d44a4f3074194 1190 Pfam PF14331 ImcF-related N-terminal domain 209 465 1.2E-90 T 11-10-2018 IPR025743 ImcF-related, N-terminal domain dqs_4034 659c0a5821be8e03a93d44a4f3074194 1190 SUPERFAMILY SSF52540 139 308 2.99E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1430 db5af8149bc60fb16ba4c72297cc7fe2 373 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 10 366 1.0E-90 T 11-10-2018 IPR017740 Type VI secretion system-associated, ImpA dqs_1430 db5af8149bc60fb16ba4c72297cc7fe2 373 Pfam PF06812 ImpA, N-terminal, type VI secretion system 11 133 2.0E-32 T 11-10-2018 IPR010657 ImpA, N-terminal dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 Gene3D G3DSA:2.40.50.940 224 352 1.1E-10 T 11-10-2018 dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 Pfam PF08402 TOBE domain 282 351 1.5E-9 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 SUPERFAMILY SSF52540 4 239 1.73E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 Gene3D G3DSA:2.40.50.140 289 343 1.1E-10 T 11-10-2018 dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 SUPERFAMILY SSF50331 241 352 2.82E-11 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 Gene3D G3DSA:3.40.50.300 2 223 1.2E-59 T 11-10-2018 dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 Pfam PF00005 ABC transporter 20 163 5.5E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2340 1877a385c1a547739985ee4fdf66f13b 374 SMART SM00382 28 213 5.4E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3297 172896efeb28422ee0797cd6731ffb82 408 Pfam PF02082 Transcriptional regulator 285 356 1.9E-4 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type dqs_3297 172896efeb28422ee0797cd6731ffb82 408 Pfam PF03631 Virulence factor BrkB 20 265 2.0E-55 T 11-10-2018 IPR017039 Virulence factor BrkB dqs_3297 172896efeb28422ee0797cd6731ffb82 408 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 9 267 5.1E-64 T 11-10-2018 IPR017039 Virulence factor BrkB dqs_3297 172896efeb28422ee0797cd6731ffb82 408 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 1 296 21.804 T 11-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial dqs_0411 c3be691a65ad942c0257577fad57de11 131 Gene3D G3DSA:2.60.320.10 40 131 1.7E-18 T 11-10-2018 IPR038690 NusG, domain 2 superfamily dqs_0411 c3be691a65ad942c0257577fad57de11 131 Pfam PF07009 NusG domain II 22 121 4.0E-19 T 11-10-2018 IPR024045 NusG, domain 2 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 296 311 2.2E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 311 327 2.2E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 Pfam PF12852 Cupin 4 212 4.7E-48 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 Gene3D G3DSA:1.10.10.60 289 333 3.3E-15 T 11-10-2018 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 Gene3D G3DSA:1.10.10.60 226 288 1.4E-9 T 11-10-2018 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 Pfam PF12833 Helix-turn-helix domain 252 328 1.2E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 SUPERFAMILY SSF46689 280 329 8.96E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 SUPERFAMILY SSF46689 227 277 1.21E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 SMART SM00342 244 327 2.0E-29 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 SUPERFAMILY SSF51215 50 90 7.72E-5 T 11-10-2018 IPR037923 Transcription regulator HTH-like dqs_1440 f3fe77c304c9fc6a0512be5e1e8ea34e 334 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 281 323 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 dqs_3711 21fe72bd5bb35ad1cab720b3f5543a2c 278 SUPERFAMILY SSF56112 41 234 7.91E-7 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_3711 21fe72bd5bb35ad1cab720b3f5543a2c 278 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 30 236 8.8E-52 T 11-10-2018 dqs_3711 21fe72bd5bb35ad1cab720b3f5543a2c 278 PIRSF PIRSF037318 3 271 2.2E-101 T 11-10-2018 IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP GO:0009103|GO:0016301 dqs_2826 35f847a795c7148c008ec5bf5408d4dc 610 SMART SM00267 438 609 8.4E-59 T 11-10-2018 IPR000160 GGDEF domain dqs_2826 35f847a795c7148c008ec5bf5408d4dc 610 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 450 608 6.0E-46 T 11-10-2018 IPR000160 GGDEF domain dqs_2826 35f847a795c7148c008ec5bf5408d4dc 610 Pfam PF00990 Diguanylate cyclase, GGDEF domain 450 605 6.0E-44 T 11-10-2018 IPR000160 GGDEF domain dqs_2826 35f847a795c7148c008ec5bf5408d4dc 610 Gene3D G3DSA:3.30.70.270 442 609 3.3E-56 T 11-10-2018 dqs_2826 35f847a795c7148c008ec5bf5408d4dc 610 SUPERFAMILY SSF55073 454 608 1.37E-47 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2515 ab7b2fe365159ac828ad2795e9a67484 190 Gene3D G3DSA:1.20.5.440 1 41 1.7E-12 T 11-10-2018 dqs_2515 ab7b2fe365159ac828ad2795e9a67484 190 SUPERFAMILY SSF51182 4 189 1.75E-55 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2515 ab7b2fe365159ac828ad2795e9a67484 190 Pfam PF05995 Cysteine dioxygenase type I 42 155 2.8E-8 T 11-10-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 dqs_2515 ab7b2fe365159ac828ad2795e9a67484 190 Gene3D G3DSA:2.60.120.10 42 184 1.3E-54 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_1832 13878288a5310e3aa9f3a69dca15faaf 236 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 227 6.9E-69 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 dqs_1832 13878288a5310e3aa9f3a69dca15faaf 236 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 229 3.1E-69 T 11-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 dqs_1832 13878288a5310e3aa9f3a69dca15faaf 236 SUPERFAMILY SSF53448 9 229 8.14E-61 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1832 13878288a5310e3aa9f3a69dca15faaf 236 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 108 115 - T 11-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 dqs_1832 13878288a5310e3aa9f3a69dca15faaf 236 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 228 42.488 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 dqs_1832 13878288a5310e3aa9f3a69dca15faaf 236 Gene3D G3DSA:3.90.550.10 2 234 1.7E-74 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 Gene3D G3DSA:1.10.150.570 570 624 1.4E-23 T 11-10-2018 dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 625 42.623 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 SMART SM01228 547 618 5.3E-43 T 11-10-2018 dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 Pfam PF01134 Glucose inhibited division protein A 8 399 3.5E-167 T 11-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 623 1.5E-273 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 Gene3D G3DSA:1.10.10.1800 459 551 8.8E-24 T 11-10-2018 dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 Pfam PF13932 GidA associated domain 402 617 7.6E-75 T 11-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 Gene3D G3DSA:3.50.50.60 295 458 1.4E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 Gene3D G3DSA:3.50.50.60 2 219 5.7E-86 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 SUPERFAMILY SSF51905 7 261 1.46E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0150 fd9dcd5a97aaec2d219942e1939e7f16 634 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 dqs_3728 3137af55ca58b2d3c410de91595ad23a 247 Pfam PF00535 Glycosyl transferase family 2 7 158 1.7E-18 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_3728 3137af55ca58b2d3c410de91595ad23a 247 Gene3D G3DSA:3.90.550.10 1 238 1.4E-47 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3728 3137af55ca58b2d3c410de91595ad23a 247 SUPERFAMILY SSF53448 1 242 1.59E-47 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2388 d782b68e0096b30a2c38a85bea57f9c4 177 Gene3D G3DSA:2.60.30.10 45 175 1.7E-56 T 11-10-2018 IPR036560 Methylamine/Aralkylamine dehydrogenase light chain superfamily GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 dqs_2388 d782b68e0096b30a2c38a85bea57f9c4 177 PIRSF PIRSF000192 1 174 1.9E-53 T 11-10-2018 IPR016008 Amine dehydrogenase light chain GO:0009308|GO:0030058|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 dqs_2388 d782b68e0096b30a2c38a85bea57f9c4 177 SUPERFAMILY SSF57561 60 173 7.72E-55 T 11-10-2018 IPR036560 Methylamine/Aralkylamine dehydrogenase light chain superfamily GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 dqs_2388 d782b68e0096b30a2c38a85bea57f9c4 177 Pfam PF02975 Methylamine dehydrogenase, L chain 65 171 1.2E-51 T 11-10-2018 IPR013504 Methylamine/Aralkylamine dehydrogenase light chain, C-terminal domain GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 dqs_4093 0823f5cf9918aa36a121259f8725e148 63 Pfam PF11943 Protein of unknown function (DUF3460) 3 59 1.9E-28 T 11-10-2018 IPR021853 Protein of unknown function DUF3460 dqs_0077 e9531a10e37e40f4b58691ec66f4c16e 231 Gene3D G3DSA:3.30.420.10 23 196 7.0E-47 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_0077 e9531a10e37e40f4b58691ec66f4c16e 231 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 28 191 1.2E-23 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 dqs_0077 e9531a10e37e40f4b58691ec66f4c16e 231 SMART SM00479 30 197 1.5E-34 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_0077 e9531a10e37e40f4b58691ec66f4c16e 231 Pfam PF00929 Exonuclease 33 188 6.3E-28 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_0077 e9531a10e37e40f4b58691ec66f4c16e 231 SUPERFAMILY SSF53098 30 198 2.24E-49 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_3737 8a607a91e60dc34e1ec1da2c56d47908 341 Gene3D G3DSA:3.90.550.10 5 231 8.5E-17 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3737 8a607a91e60dc34e1ec1da2c56d47908 341 SUPERFAMILY SSF53448 8 134 3.56E-14 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3737 8a607a91e60dc34e1ec1da2c56d47908 341 Pfam PF00535 Glycosyl transferase family 2 9 164 1.5E-12 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_0333 2e421da823d924b06c52151d2f608267 204 SUPERFAMILY SSF63380 92 194 1.28E-33 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_0333 2e421da823d924b06c52151d2f608267 204 PIRSF PIRSF000498 1 204 6.5E-69 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0333 2e421da823d924b06c52151d2f608267 204 Gene3D G3DSA:2.40.30.20 101 203 1.6E-34 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0333 2e421da823d924b06c52151d2f608267 204 Pfam PF00677 Lumazine binding domain 3 86 1.0E-14 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0333 2e421da823d924b06c52151d2f608267 204 Pfam PF00677 Lumazine binding domain 99 183 1.1E-24 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0333 2e421da823d924b06c52151d2f608267 204 Gene3D G3DSA:2.40.30.20 1 88 1.1E-20 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 dqs_0333 2e421da823d924b06c52151d2f608267 204 SUPERFAMILY SSF63380 1 91 1.45E-19 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_0333 2e421da823d924b06c52151d2f608267 204 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 199 9.1E-58 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 dqs_0684 9988df8470c37984e2c9de6ba138f5ce 249 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 167 245 1.8E-18 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 dqs_0684 9988df8470c37984e2c9de6ba138f5ce 249 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 169 245 5.8E-19 T 11-10-2018 IPR006260 TonB/TolA, C-terminal dqs_0684 9988df8470c37984e2c9de6ba138f5ce 249 SUPERFAMILY SSF74653 163 243 1.16E-21 T 11-10-2018 dqs_0684 9988df8470c37984e2c9de6ba138f5ce 249 Gene3D G3DSA:3.30.1150.10 120 247 2.4E-22 T 11-10-2018 dqs_0684 9988df8470c37984e2c9de6ba138f5ce 249 PRINTS PR01217 Proline rich extensin signature 62 78 8.1E-10 T 11-10-2018 dqs_0684 9988df8470c37984e2c9de6ba138f5ce 249 PRINTS PR01217 Proline rich extensin signature 102 127 8.1E-10 T 11-10-2018 dqs_0684 9988df8470c37984e2c9de6ba138f5ce 249 PRINTS PR01217 Proline rich extensin signature 1 17 8.1E-10 T 11-10-2018 dqs_0684 9988df8470c37984e2c9de6ba138f5ce 249 PRINTS PR01217 Proline rich extensin signature 84 101 8.1E-10 T 11-10-2018 dqs_1683 fba13c2ae607c5483f3c95a1d49814f8 657 SMART SM00487 19 289 0.0058 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain dqs_1683 fba13c2ae607c5483f3c95a1d49814f8 657 SUPERFAMILY SSF52540 14 612 5.32E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1683 fba13c2ae607c5483f3c95a1d49814f8 657 SUPERFAMILY SSF52540 189 600 7.36E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1683 fba13c2ae607c5483f3c95a1d49814f8 657 Gene3D G3DSA:3.40.50.300 21 265 4.7E-49 T 11-10-2018 dqs_1683 fba13c2ae607c5483f3c95a1d49814f8 657 Pfam PF13307 Helicase C-terminal domain 466 628 4.9E-34 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 dqs_1683 fba13c2ae607c5483f3c95a1d49814f8 657 Gene3D G3DSA:3.40.50.300 447 644 5.9E-37 T 11-10-2018 dqs_1683 fba13c2ae607c5483f3c95a1d49814f8 657 SMART SM00491 481 615 9.1E-37 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 dqs_1998 4d4e66d6ef5ba06ddbd012b069409e75 505 Pfam PF04945 YHS domain 411 453 2.6E-15 T 11-10-2018 IPR007029 YHS domain dqs_1998 4d4e66d6ef5ba06ddbd012b069409e75 505 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 25 253 6.0E-73 T 11-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 dqs_1998 4d4e66d6ef5ba06ddbd012b069409e75 505 SUPERFAMILY SSF47240 4 499 2.07E-153 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_1998 4d4e66d6ef5ba06ddbd012b069409e75 505 Gene3D G3DSA:1.10.620.20 3 505 3.9E-195 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 dqs_3144 77f425fb854378a9c6ade164702a59b7 561 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 457 559 9.9E-49 T 11-10-2018 dqs_3144 77f425fb854378a9c6ade164702a59b7 561 Pfam PF13450 NAD(P)-binding Rossmann-like domain 22 67 2.7E-7 T 11-10-2018 dqs_3144 77f425fb854378a9c6ade164702a59b7 561 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 188 203 2.2E-6 T 11-10-2018 dqs_3144 77f425fb854378a9c6ade164702a59b7 561 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 19 41 2.2E-6 T 11-10-2018 dqs_3144 77f425fb854378a9c6ade164702a59b7 561 SUPERFAMILY SSF54862 461 559 2.71E-26 T 11-10-2018 dqs_3144 77f425fb854378a9c6ade164702a59b7 561 SUPERFAMILY SSF51905 14 459 1.71E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3144 77f425fb854378a9c6ade164702a59b7 561 Gene3D G3DSA:3.30.70.20 462 556 1.6E-38 T 11-10-2018 dqs_3144 77f425fb854378a9c6ade164702a59b7 561 Gene3D G3DSA:3.30.9.90 89 461 4.0E-189 T 11-10-2018 dqs_3144 77f425fb854378a9c6ade164702a59b7 561 Gene3D G3DSA:3.50.50.60 18 394 4.0E-189 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3144 77f425fb854378a9c6ade164702a59b7 561 SUPERFAMILY SSF54373 221 315 1.14E-36 T 11-10-2018 dqs_3949 79387066f857065e3b266f21135308ec 188 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 24 181 1.9E-47 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE dqs_3949 79387066f857065e3b266f21135308ec 188 Gene3D G3DSA:3.30.1460.40 12 145 4.0E-42 T 11-10-2018 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily dqs_3949 79387066f857065e3b266f21135308ec 188 Pfam PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE 22 182 8.4E-50 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE dqs_3949 79387066f857065e3b266f21135308ec 188 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 29 123 3.0E-16 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE dqs_3515 d3c72268b097486e2d824d6f3abbe5f4 354 Gene3D G3DSA:2.40.420.20 36 337 3.7E-61 T 11-10-2018 dqs_3515 d3c72268b097486e2d824d6f3abbe5f4 354 Gene3D G3DSA:1.10.287.470 88 160 3.7E-61 T 11-10-2018 dqs_3515 d3c72268b097486e2d824d6f3abbe5f4 354 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 31 342 2.1E-56 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_3515 d3c72268b097486e2d824d6f3abbe5f4 354 Gene3D G3DSA:2.40.50.100 54 194 3.7E-61 T 11-10-2018 dqs_3515 d3c72268b097486e2d824d6f3abbe5f4 354 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 268 2.7E-20 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_3515 d3c72268b097486e2d824d6f3abbe5f4 354 Gene3D G3DSA:2.40.30.170 42 274 3.7E-61 T 11-10-2018 dqs_3515 d3c72268b097486e2d824d6f3abbe5f4 354 SUPERFAMILY SSF111369 47 272 1.83E-26 T 11-10-2018 dqs_2374 91122535c50e5d9444cee3dc824ee724 469 Pfam PF13807 G-rich domain on putative tyrosine kinase 342 420 2.6E-11 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain dqs_2374 91122535c50e5d9444cee3dc824ee724 469 TIGRFAM TIGR03017 EpsF: chain length determinant protein EpsF 1 444 2.6E-160 T 11-10-2018 IPR017468 Chain length determinant protein EpsF dqs_2374 91122535c50e5d9444cee3dc824ee724 469 Pfam PF02706 Chain length determinant protein 2 87 3.3E-6 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 dqs_3611 eb86b1fb0985d697e129286ecbc024e0 346 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_3611 eb86b1fb0985d697e129286ecbc024e0 346 SMART SM00382 122 256 0.0077 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3611 eb86b1fb0985d697e129286ecbc024e0 346 Gene3D G3DSA:3.30.450.90 1 100 3.4E-38 T 11-10-2018 dqs_3611 eb86b1fb0985d697e129286ecbc024e0 346 Gene3D G3DSA:3.40.50.300 101 346 2.0E-105 T 11-10-2018 dqs_3611 eb86b1fb0985d697e129286ecbc024e0 346 Pfam PF00437 Type II/IV secretion system protein 12 265 4.4E-46 T 11-10-2018 IPR001482 Type II/IV secretion system protein dqs_3611 eb86b1fb0985d697e129286ecbc024e0 346 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 343 3.8E-158 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 dqs_3611 eb86b1fb0985d697e129286ecbc024e0 346 SUPERFAMILY SSF52540 5 335 8.61E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1255 e9e3bf2f96a2f91f440b5df48ff9a331 103 TIGRFAM TIGR04490 SoxZ_true: thiosulfate oxidation carrier complex protein SoxZ 6 102 3.4E-35 T 11-10-2018 IPR030995 Thiosulfate oxidation carrier complex protein SoxZ dqs_1255 e9e3bf2f96a2f91f440b5df48ff9a331 103 Gene3D G3DSA:2.60.40.10 2 103 2.1E-32 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_1255 e9e3bf2f96a2f91f440b5df48ff9a331 103 SUPERFAMILY SSF81296 2 102 5.32E-29 T 11-10-2018 IPR014756 Immunoglobulin E-set dqs_1255 e9e3bf2f96a2f91f440b5df48ff9a331 103 Pfam PF08770 Sulphur oxidation protein SoxZ 7 100 6.5E-33 T 11-10-2018 IPR014880 Sulphur oxidation protein SoxZ dqs_3388 e03ba7a91a5aa8d7afbf9868df034241 278 SUPERFAMILY SSF53474 7 146 8.65E-15 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3388 e03ba7a91a5aa8d7afbf9868df034241 278 TIGRFAM TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2 8 270 1.5E-77 T 11-10-2018 IPR017532 Hydrolase, ortholog 2, exosortase system type 1 associated dqs_3388 e03ba7a91a5aa8d7afbf9868df034241 278 Gene3D G3DSA:3.40.50.1820 11 203 2.4E-16 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3388 e03ba7a91a5aa8d7afbf9868df034241 278 Pfam PF12146 Serine aminopeptidase, S33 28 197 1.9E-6 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 dqs_3640 84254d17d6bb917688d285b83710b25d 378 Pfam PF08668 HDOD domain 189 293 6.3E-11 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_3640 84254d17d6bb917688d285b83710b25d 378 Gene3D G3DSA:1.10.3210.10 172 370 4.2E-19 T 11-10-2018 dqs_3640 84254d17d6bb917688d285b83710b25d 378 SUPERFAMILY SSF109604 168 373 1.76E-31 T 11-10-2018 dqs_0863 4bd470021a87231b538d4f15d44d8577 173 PIRSF PIRSF006118 1 172 7.6E-65 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 dqs_0863 4bd470021a87231b538d4f15d44d8577 173 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 10 160 1.3E-49 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 dqs_0863 4bd470021a87231b538d4f15d44d8577 173 SUPERFAMILY SSF56784 7 168 1.55E-40 T 11-10-2018 IPR036412 HAD-like superfamily dqs_0863 4bd470021a87231b538d4f15d44d8577 173 Gene3D G3DSA:3.40.50.1000 2 172 8.2E-50 T 11-10-2018 IPR023214 HAD superfamily dqs_3745 93ce344010cbef9cd2f7fa4d0f733a51 107 Gene3D G3DSA:2.20.130.30 36 107 2.6E-28 T 11-10-2018 dqs_3745 93ce344010cbef9cd2f7fa4d0f733a51 107 Pfam PF11191 Protein of unknown function (DUF2782) 24 107 1.4E-32 T 11-10-2018 IPR021357 Protein of unknown function DUF2782 dqs_3566 48124fc559859a00160235cd64f7503c 231 SUPERFAMILY SSF56808 6 225 2.62E-82 T 11-10-2018 IPR023674 Ribosomal protein L1-like dqs_3566 48124fc559859a00160235cd64f7503c 231 Gene3D G3DSA:3.40.50.790 68 159 4.0E-78 T 11-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich dqs_3566 48124fc559859a00160235cd64f7503c 231 Pfam PF00687 Ribosomal protein L1p/L10e family 31 219 4.8E-51 T 11-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein dqs_3566 48124fc559859a00160235cd64f7503c 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 2.8E-103 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 dqs_3566 48124fc559859a00160235cd64f7503c 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 11-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3566 48124fc559859a00160235cd64f7503c 231 Gene3D G3DSA:3.30.190.20 25 222 4.0E-78 T 11-10-2018 dqs_3566 48124fc559859a00160235cd64f7503c 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.266 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 dqs_3566 48124fc559859a00160235cd64f7503c 231 PIRSF PIRSF002155 1 227 3.4E-77 T 11-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_0639 4765eae405d6ce6b4d2bf56dc60a33da 239 Gene3D G3DSA:3.90.1680.10 1 227 2.3E-59 T 11-10-2018 IPR036590 SOS response associated peptidase-like dqs_0639 4765eae405d6ce6b4d2bf56dc60a33da 239 Pfam PF02586 SOS response associated peptidase (SRAP) 1 215 5.4E-50 T 11-10-2018 IPR003738 SOS response associated peptidase (SRAP) dqs_0639 4765eae405d6ce6b4d2bf56dc60a33da 239 SUPERFAMILY SSF143081 2 220 1.44E-58 T 11-10-2018 IPR036590 SOS response associated peptidase-like dqs_3981 0573d1f05f95d58289c657b46dfc6192 462 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 444 3.6E-223 T 11-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 dqs_3981 0573d1f05f95d58289c657b46dfc6192 462 Gene3D G3DSA:1.10.220.70 55 141 2.7E-34 T 11-10-2018 dqs_3981 0573d1f05f95d58289c657b46dfc6192 462 PIRSF PIRSF018788 1 459 3.5E-239 T 11-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 dqs_3981 0573d1f05f95d58289c657b46dfc6192 462 Gene3D G3DSA:2.30.170.30 1 54 1.3E-24 T 11-10-2018 dqs_3981 0573d1f05f95d58289c657b46dfc6192 462 Gene3D G3DSA:3.20.20.70 142 447 6.7E-147 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_0040 33420017c3da910bcc66084f4a41ff4a 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 5.9E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_0040 33420017c3da910bcc66084f4a41ff4a 296 SUPERFAMILY SSF46785 5 115 2.99E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_0040 33420017c3da910bcc66084f4a41ff4a 296 Gene3D G3DSA:3.40.190.10 184 261 1.6E-7 T 11-10-2018 dqs_0040 33420017c3da910bcc66084f4a41ff4a 296 Pfam PF03466 LysR substrate binding domain 92 287 1.7E-40 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_0040 33420017c3da910bcc66084f4a41ff4a 296 Gene3D G3DSA:1.10.10.10 3 87 1.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0040 33420017c3da910bcc66084f4a41ff4a 296 SUPERFAMILY SSF53850 93 291 1.49E-36 T 11-10-2018 dqs_0040 33420017c3da910bcc66084f4a41ff4a 296 Gene3D G3DSA:3.40.190.10 88 183 4.7E-25 T 11-10-2018 dqs_3594 4dcd1e608a1c98ae002ab738a154ece7 280 Pfam PF08543 Phosphomethylpyrimidine kinase 19 262 1.2E-47 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 dqs_3594 4dcd1e608a1c98ae002ab738a154ece7 280 Gene3D G3DSA:3.40.1190.20 3 270 1.2E-52 T 11-10-2018 IPR029056 Ribokinase-like dqs_3594 4dcd1e608a1c98ae002ab738a154ece7 280 SUPERFAMILY SSF53613 8 272 1.5E-50 T 11-10-2018 IPR029056 Ribokinase-like dqs_2081 861597ed1cf81f4e099e3c1d3cb7d5d6 254 Gene3D G3DSA:3.40.390.10 81 251 1.1E-7 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 dqs_3249 2f6b02a6efadc371e024209e42ee1641 319 SUPERFAMILY SSF102114 66 245 1.44E-11 T 11-10-2018 dqs_3249 2f6b02a6efadc371e024209e42ee1641 319 Gene3D G3DSA:3.20.20.70 65 253 1.7E-11 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_3847 a18a30dfeccaf8d71bdb318231af17b6 236 Pfam PF08241 Methyltransferase domain 30 126 3.6E-18 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 dqs_3847 a18a30dfeccaf8d71bdb318231af17b6 236 Gene3D G3DSA:3.40.50.150 6 185 6.9E-27 T 11-10-2018 dqs_3847 a18a30dfeccaf8d71bdb318231af17b6 236 SUPERFAMILY SSF53335 15 235 1.34E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 SUPERFAMILY SSF53822 31 410 2.55E-91 T 11-10-2018 IPR028082 Periplasmic binding protein-like I dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 Gene3D G3DSA:3.40.50.2300 147 397 2.3E-138 T 11-10-2018 dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 32 406 1.1E-178 T 11-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 Gene3D G3DSA:3.40.50.2300 34 377 2.3E-138 T 11-10-2018 dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 Pfam PF13433 Periplasmic binding protein domain 32 409 6.3E-170 T 11-10-2018 dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 292 305 1.1E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 95 105 1.1E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 32 48 1.1E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_0743 3293ea21dc5bab0194ff0226e175f12b 418 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 54 70 1.1E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 dqs_1708 3db1d8f06c5ebe92805324fafa06092c 169 Pfam PF07589 PEP-CTERM motif 144 166 5.1E-8 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_1708 3db1d8f06c5ebe92805324fafa06092c 169 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 145 168 9.6E-7 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_1292 620577ac39aaaf15e47580fd5c105d5c 174 Gene3D G3DSA:2.60.120.480 11 172 1.4E-59 T 11-10-2018 IPR024060 Ureidoglycolate lyase domain superfamily GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 dqs_1292 620577ac39aaaf15e47580fd5c105d5c 174 Pfam PF04115 Ureidoglycolate lyase 13 168 8.5E-54 T 11-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 dqs_1292 620577ac39aaaf15e47580fd5c105d5c 174 SUPERFAMILY SSF51182 13 168 2.67E-57 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_1292 620577ac39aaaf15e47580fd5c105d5c 174 PIRSF PIRSF017306 12 172 3.6E-46 T 11-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 dqs_1292 620577ac39aaaf15e47580fd5c105d5c 174 Hamap MF_00616 Ureidoglycolate lyase [allA]. 12 173 37.389 T 11-10-2018 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 dqs_0861 5ebd45430b633f52019ece18c7d939d1 190 Gene3D G3DSA:2.60.450.10 27 181 1.7E-44 T 11-10-2018 dqs_0861 5ebd45430b633f52019ece18c7d939d1 190 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 25 177 3.2E-44 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 dqs_0861 5ebd45430b633f52019ece18c7d939d1 190 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 2 177 26.045 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 dqs_0861 5ebd45430b633f52019ece18c7d939d1 190 Pfam PF03968 OstA-like protein 35 147 4.0E-28 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal dqs_1195 c7898675ca0de7ea2e45bea9b871b689 126 SUPERFAMILY SSF46955 20 119 1.69E-17 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_1195 c7898675ca0de7ea2e45bea9b871b689 126 Pfam PF13411 MerR HTH family regulatory protein 22 88 1.8E-21 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1195 c7898675ca0de7ea2e45bea9b871b689 126 Gene3D G3DSA:1.10.1660.10 16 92 7.3E-21 T 11-10-2018 dqs_1195 c7898675ca0de7ea2e45bea9b871b689 126 SMART SM00422 22 93 1.3E-4 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_3565 8707c89df7e2b3ec246c4bec088d0bb1 167 Gene3D G3DSA:3.30.70.1730 5 133 4.4E-34 T 11-10-2018 dqs_3565 8707c89df7e2b3ec246c4bec088d0bb1 167 SUPERFAMILY SSF160369 4 159 3.27E-50 T 11-10-2018 dqs_3565 8707c89df7e2b3ec246c4bec088d0bb1 167 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 160 27.582 T 11-10-2018 IPR022973 Ribosomal protein L10 dqs_3565 8707c89df7e2b3ec246c4bec088d0bb1 167 Pfam PF00466 Ribosomal protein L10 6 100 1.6E-23 T 11-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 dqs_2749 06c76993ab0b5ec7da30c77b64fab4d1 233 SUPERFAMILY SSF53335 12 231 3.35E-49 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2749 06c76993ab0b5ec7da30c77b64fab4d1 233 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 9 232 37.219 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 dqs_2749 06c76993ab0b5ec7da30c77b64fab4d1 233 Pfam PF13489 Methyltransferase domain 48 202 1.4E-25 T 11-10-2018 dqs_2749 06c76993ab0b5ec7da30c77b64fab4d1 233 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 9 226 6.4E-86 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 dqs_2749 06c76993ab0b5ec7da30c77b64fab4d1 233 Gene3D G3DSA:3.40.50.150 9 232 1.1E-75 T 11-10-2018 dqs_3103 be75bc13875cd2e3b0269e68b0b428c9 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 199 51.214 T 11-10-2018 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 dqs_3103 be75bc13875cd2e3b0269e68b0b428c9 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 197 6.3E-107 T 11-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 dqs_3103 be75bc13875cd2e3b0269e68b0b428c9 199 Gene3D G3DSA:3.40.50.360 1 199 3.4E-81 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_3103 be75bc13875cd2e3b0269e68b0b428c9 199 SUPERFAMILY SSF52218 1 197 8.12E-66 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_3103 be75bc13875cd2e3b0269e68b0b428c9 199 Pfam PF03358 NADPH-dependent FMN reductase 13 141 1.4E-13 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 dqs_1039 b013902fbb64fbe844f88cd8c43375be 407 Gene3D G3DSA:3.40.50.2000 189 363 2.5E-44 T 11-10-2018 dqs_1039 b013902fbb64fbe844f88cd8c43375be 407 Pfam PF00534 Glycosyl transferases group 1 195 360 1.6E-36 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_1039 b013902fbb64fbe844f88cd8c43375be 407 Pfam PF13439 Glycosyltransferase Family 4 14 184 1.3E-30 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_1039 b013902fbb64fbe844f88cd8c43375be 407 SUPERFAMILY SSF53756 3 381 8.53E-81 T 11-10-2018 dqs_1039 b013902fbb64fbe844f88cd8c43375be 407 Gene3D G3DSA:3.40.50.2000 1 188 5.8E-35 T 11-10-2018 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 SUPERFAMILY SSF50249 1 63 9.14E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 SMART SM00278 108 127 0.004 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 SMART SM00278 73 92 1.3 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 Pfam PF14520 Helix-hairpin-helix domain 72 130 7.4E-19 T 11-10-2018 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 197 30.694 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 Pfam PF07499 RuvA, C-terminal domain 153 197 2.2E-12 T 11-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 SUPERFAMILY SSF47781 66 135 1.48E-20 T 11-10-2018 IPR010994 RuvA domain 2-like dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 SUPERFAMILY SSF46929 153 198 1.01E-8 T 11-10-2018 IPR036267 RuvA, C-terminal domain superfamily dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 Gene3D G3DSA:1.10.8.10 141 199 3.3E-5 T 11-10-2018 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 Gene3D G3DSA:1.10.150.20 67 138 1.6E-25 T 11-10-2018 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 Pfam PF01330 RuvA N terminal domain 1 62 3.6E-19 T 11-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 Gene3D G3DSA:2.40.50.140 1 66 6.1E-25 T 11-10-2018 dqs_0670 359cf1d252cdad4e402ad2d91bce984b 199 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 195 3.5E-50 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 dqs_1420 44f04b8350d591190f4165ce999a3fd4 204 Gene3D G3DSA:2.60.40.4150 57 181 3.6E-28 T 11-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily dqs_1420 44f04b8350d591190f4165ce999a3fd4 204 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 39 175 6.9E-24 T 11-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN dqs_1420 44f04b8350d591190f4165ce999a3fd4 204 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 45 175 5.5E-30 T 11-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN dqs_1837 d617f861be347221a75fc5948c249bb8 1029 SUPERFAMILY SSF56601 745 1009 4.55E-22 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_1837 d617f861be347221a75fc5948c249bb8 1029 Gene3D G3DSA:1.10.3810.10 134 377 7.3E-8 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_1837 d617f861be347221a75fc5948c249bb8 1029 SUPERFAMILY SSF53955 151 301 5.06E-10 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_1837 d617f861be347221a75fc5948c249bb8 1029 Pfam PF00912 Transglycosylase 142 343 6.2E-27 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_1837 d617f861be347221a75fc5948c249bb8 1029 Gene3D G3DSA:3.40.710.10 800 1018 1.2E-12 T 11-10-2018 dqs_1837 d617f861be347221a75fc5948c249bb8 1029 SUPERFAMILY SSF56601 497 941 4.83E-5 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like dqs_0756 32762d50d23f8ef73359c491cc86118b 511 SUPERFAMILY SSF52096 224 511 1.96E-91 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0756 32762d50d23f8ef73359c491cc86118b 511 SUPERFAMILY SSF52096 3 250 7.0E-81 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0756 32762d50d23f8ef73359c491cc86118b 511 Gene3D G3DSA:3.90.226.10 258 511 3.3E-95 T 11-10-2018 dqs_0756 32762d50d23f8ef73359c491cc86118b 511 Pfam PF01039 Carboxyl transferase domain 27 509 2.0E-200 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 dqs_0756 32762d50d23f8ef73359c491cc86118b 511 Gene3D G3DSA:3.90.226.10 1 257 1.1E-99 T 11-10-2018 dqs_3366 cc4006b3e6a26f3a53e9e289e1743564 239 Pfam PF01863 Protein of unknown function DUF45 18 219 2.9E-51 T 11-10-2018 IPR002725 Protein of unknown function DUF45 dqs_3366 cc4006b3e6a26f3a53e9e289e1743564 239 Gene3D G3DSA:3.30.2010.10 133 223 8.0E-16 T 11-10-2018 dqs_0570 72ec7fece7602aa7227b1682f64b3ffd 142 SUPERFAMILY SSF53146 3 119 3.66E-29 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_0570 72ec7fece7602aa7227b1682f64b3ffd 142 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 12 101 2.1E-19 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis dqs_0570 72ec7fece7602aa7227b1682f64b3ffd 142 Gene3D G3DSA:3.30.420.130 2 121 1.1E-30 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 265 273 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 SUPERFAMILY SSF52343 105 219 1.96E-25 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 SUPERFAMILY SSF54292 209 313 1.31E-24 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 Gene3D G3DSA:2.40.30.10 2 100 3.7E-22 T 11-10-2018 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 237 306 3.7E-10 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 SUPERFAMILY SSF63380 3 99 4.66E-22 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 Gene3D G3DSA:3.10.20.30 221 315 3.0E-24 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 PRINTS PR00409 Phthalate dioxygenase reductase family signature 28 38 4.6E-30 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 PRINTS PR00409 Phthalate dioxygenase reductase family signature 89 103 4.6E-30 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 PRINTS PR00409 Phthalate dioxygenase reductase family signature 136 145 4.6E-30 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 PRINTS PR00409 Phthalate dioxygenase reductase family signature 187 195 4.6E-30 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 PRINTS PR00409 Phthalate dioxygenase reductase family signature 111 130 4.6E-30 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 PRINTS PR00409 Phthalate dioxygenase reductase family signature 38 50 4.6E-30 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 dqs_1235 b4e99ff61729063ac59743f97c3d8da4 315 Gene3D G3DSA:3.40.50.80 101 219 6.0E-24 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain dqs_4013 8c228fa9708e705461befbd5671589e4 81 Pfam PF00364 Biotin-requiring enzyme 19 78 2.7E-12 T 11-10-2018 IPR000089 Biotin/lipoyl attachment dqs_4013 8c228fa9708e705461befbd5671589e4 81 Gene3D G3DSA:2.40.50.100 7 81 7.9E-16 T 11-10-2018 dqs_4013 8c228fa9708e705461befbd5671589e4 81 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 30 59 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 dqs_4013 8c228fa9708e705461befbd5671589e4 81 SUPERFAMILY SSF51230 13 80 2.62E-15 T 11-10-2018 IPR011053 Single hybrid motif dqs_4081 3e09b86187bd2d869a92006553fa4368 212 PIRSF PIRSF000013 4 192 1.5E-90 T 11-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 dqs_4081 3e09b86187bd2d869a92006553fa4368 212 Gene3D G3DSA:1.10.3820.10 12 190 8.7E-38 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily dqs_4081 3e09b86187bd2d869a92006553fa4368 212 SUPERFAMILY SSF48695 15 184 7.89E-55 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily dqs_4081 3e09b86187bd2d869a92006553fa4368 212 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 20 182 3.0E-75 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal dqs_2713 2275c94a81533842483950464c6c8a44 256 Gene3D G3DSA:2.40.30.170 41 254 1.1E-36 T 11-10-2018 dqs_2713 2275c94a81533842483950464c6c8a44 256 Gene3D G3DSA:2.40.50.100 49 177 1.1E-36 T 11-10-2018 dqs_2713 2275c94a81533842483950464c6c8a44 256 SUPERFAMILY SSF111369 40 253 3.53E-23 T 11-10-2018 dqs_2713 2275c94a81533842483950464c6c8a44 256 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 30 253 3.6E-37 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_2713 2275c94a81533842483950464c6c8a44 256 Gene3D G3DSA:1.10.287.470 84 143 1.1E-36 T 11-10-2018 dqs_2713 2275c94a81533842483950464c6c8a44 256 Pfam PF13437 HlyD family secretion protein 147 239 1.7E-18 T 11-10-2018 dqs_1874 66c7df2f20711dcf20a93ed959f8e7eb 143 Pfam PF11127 Protein of unknown function (DUF2892) 53 106 4.5E-6 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 dqs_1574 20f08b2d3277adc6d8a6d59d3c352945 121 SMART SM00448 3 116 3.2E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1574 20f08b2d3277adc6d8a6d59d3c352945 121 Pfam PF00072 Response regulator receiver domain 5 116 5.2E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_1574 20f08b2d3277adc6d8a6d59d3c352945 121 Gene3D G3DSA:3.40.50.12740 1 121 5.6E-41 T 11-10-2018 dqs_1574 20f08b2d3277adc6d8a6d59d3c352945 121 SUPERFAMILY SSF52172 4 121 2.13E-38 T 11-10-2018 IPR011006 CheY-like superfamily dqs_3353 51a464d5daa921dedfe7181783bffc96 171 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 11 169 23.082 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 dqs_3353 51a464d5daa921dedfe7181783bffc96 171 Pfam PF04390 Lipopolysaccharide-assembly 49 164 1.0E-13 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 dqs_3353 51a464d5daa921dedfe7181783bffc96 171 Gene3D G3DSA:3.30.160.150 39 170 8.5E-47 T 11-10-2018 dqs_3519 140ad512a4b6a3e12406c5666c4427cc 380 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 377 3.5E-135 T 11-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 dqs_3519 140ad512a4b6a3e12406c5666c4427cc 380 Gene3D G3DSA:3.40.640.10 57 280 6.8E-131 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_3519 140ad512a4b6a3e12406c5666c4427cc 380 Gene3D G3DSA:3.90.1150.10 18 372 6.8E-131 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3519 140ad512a4b6a3e12406c5666c4427cc 380 Pfam PF00155 Aminotransferase class I and II 28 372 2.7E-30 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_3519 140ad512a4b6a3e12406c5666c4427cc 380 SUPERFAMILY SSF53383 1 377 1.5E-92 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_4099 7c33dbe0abc077f439fd1b8fcc26cde3 473 Gene3D G3DSA:3.30.70.270 49 162 4.4E-6 T 11-10-2018 dqs_4099 7c33dbe0abc077f439fd1b8fcc26cde3 473 SUPERFAMILY SSF56672 12 220 3.85E-29 T 11-10-2018 dqs_4099 7c33dbe0abc077f439fd1b8fcc26cde3 473 Gene3D G3DSA:2.30.40.20 15 48 4.4E-6 T 11-10-2018 dqs_4099 7c33dbe0abc077f439fd1b8fcc26cde3 473 Pfam PF00817 impB/mucB/samB family 19 124 6.2E-6 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 dqs_4099 7c33dbe0abc077f439fd1b8fcc26cde3 473 Gene3D G3DSA:1.10.150.20 163 211 4.4E-6 T 11-10-2018 dqs_4133 d7ce9725f6a247e191e32bc49209ff2a 69 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 25.436 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor dqs_4133 d7ce9725f6a247e191e32bc49209ff2a 69 Pfam PF01809 Haemolytic domain 2 68 2.1E-31 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor dqs_4133 d7ce9725f6a247e191e32bc49209ff2a 69 SMART SM01234 1 68 3.5E-47 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor dqs_4133 d7ce9725f6a247e191e32bc49209ff2a 69 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 69 9.4E-28 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor dqs_4133 d7ce9725f6a247e191e32bc49209ff2a 69 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 9.0E-22 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor dqs_1594 a85ef8d709c9f8fad04a07472db3274b 62 Gene3D G3DSA:2.20.25.10 8 62 5.7E-27 T 11-10-2018 dqs_1594 a85ef8d709c9f8fad04a07472db3274b 62 SUPERFAMILY SSF158997 1 54 1.31E-21 T 11-10-2018 dqs_1594 a85ef8d709c9f8fad04a07472db3274b 62 Pfam PF03966 Trm112p-like protein 2 41 3.2E-12 T 11-10-2018 IPR005651 Trm112-like dqs_1594 a85ef8d709c9f8fad04a07472db3274b 62 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 28.38 T 11-10-2018 IPR038053 Uncharacterised protein family UPF0434 dqs_1856 22e6ba38d22311a6d7eacf2566cfb34b 202 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 200 19.155 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 dqs_1856 22e6ba38d22311a6d7eacf2566cfb34b 202 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 201 1.9E-53 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 dqs_1856 22e6ba38d22311a6d7eacf2566cfb34b 202 Pfam PF04279 Intracellular septation protein A 1 199 9.2E-71 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 dqs_2993 d5ae60c8ef21080c5a9fc4df855f0c10 281 SUPERFAMILY SSF51658 16 220 9.95E-16 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily dqs_2993 d5ae60c8ef21080c5a9fc4df855f0c10 281 Gene3D G3DSA:3.20.20.150 5 280 6.2E-88 T 11-10-2018 dqs_2993 d5ae60c8ef21080c5a9fc4df855f0c10 281 Pfam PF05114 Protein of unknown function (DUF692) 8 270 7.9E-100 T 11-10-2018 IPR007801 Uncharacterised protein family UPF0276 dqs_0502 d7ee5b547de0d781d5e794bd6e401b2b 65 Pfam PF11146 Protein of unknown function (DUF2905) 3 64 2.2E-16 T 11-10-2018 IPR021320 Protein of unknown function DUF2905 dqs_0093 6e5e11a2c1a9c97f36c4e14aea5cfdc5 155 Pfam PF08982 Domain of unknown function (DUF1857) 8 152 4.9E-34 T 11-10-2018 IPR015075 Acetylaranotin biosynthesis cluster protein L dqs_0093 6e5e11a2c1a9c97f36c4e14aea5cfdc5 155 SUPERFAMILY SSF55961 2 150 4.26E-51 T 11-10-2018 dqs_0093 6e5e11a2c1a9c97f36c4e14aea5cfdc5 155 Gene3D G3DSA:3.30.530.20 1 154 1.2E-54 T 11-10-2018 IPR023393 START-like domain superfamily dqs_3276 a8589713ce67e2db523f897af5403a9e 271 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 271 43.458 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 dqs_3276 a8589713ce67e2db523f897af5403a9e 271 PIRSF PIRSF000388 1 271 7.3E-106 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 dqs_3276 a8589713ce67e2db523f897af5403a9e 271 Gene3D G3DSA:3.20.20.60 8 271 8.3E-112 T 11-10-2018 dqs_3276 a8589713ce67e2db523f897af5403a9e 271 Pfam PF02548 Ketopantoate hydroxymethyltransferase 10 266 4.6E-112 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 dqs_3276 a8589713ce67e2db523f897af5403a9e 271 SUPERFAMILY SSF51621 10 271 2.39E-104 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 dqs_3276 a8589713ce67e2db523f897af5403a9e 271 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 14 271 4.0E-98 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 dqs_0539 75cc67d99770a858570f5d4bb10379ac 191 Pfam PF04891 NifQ 33 188 3.0E-50 T 11-10-2018 IPR006975 NifQ GO:0009399|GO:0030151 dqs_3426 e237a2a4086cf61e9dfe59ad24e94f35 260 Gene3D G3DSA:2.50.20.10 35 260 6.5E-59 T 11-10-2018 dqs_3426 e237a2a4086cf61e9dfe59ad24e94f35 260 PIRSF PIRSF028205 8 260 1.6E-79 T 11-10-2018 IPR011220 Uncharacterised conserved protein UCP028205 dqs_3426 e237a2a4086cf61e9dfe59ad24e94f35 260 Pfam PF17131 Outer membrane lipoprotein-sorting protein 83 258 6.9E-47 T 11-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 Gene3D G3DSA:3.30.565.10 328 482 8.7E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 476 3.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 434 3.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 420 3.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 456 3.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 322 1.9E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 477 2.2E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 SUPERFAMILY SSF55874 312 481 2.23E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 SMART SM00304 205 257 2.9E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 SMART SM00388 258 323 1.2E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 SUPERFAMILY SSF47384 241 322 2.35E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 Pfam PF08521 Two-component sensor kinase N-terminal 36 180 6.1E-40 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 Gene3D G3DSA:1.10.287.130 209 323 2.5E-23 T 11-10-2018 dqs_1050 c226eed35a8f683dc06b1355125d1d59 494 SMART SM00387 370 479 4.3E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2014 42c61d70ceede8c2850dda7935955f98 502 Pfam PF01936 NYN domain 3 162 1.7E-19 T 11-10-2018 IPR021139 NYN domain, limkain-b1-type dqs_2014 42c61d70ceede8c2850dda7935955f98 502 Gene3D G3DSA:3.40.50.1010 48 167 1.9E-11 T 11-10-2018 dqs_0444 5db9ebdeeca03230b8c0376460773359 259 Pfam PF01925 Sulfite exporter TauE/SafE 7 256 7.5E-46 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 dqs_0816 8dd3d46b1677dc98f95ac303ad9f2b7c 249 SUPERFAMILY SSF56219 2 245 1.96E-48 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_0816 8dd3d46b1677dc98f95ac303ad9f2b7c 249 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 238 2.4E-16 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase dqs_0816 8dd3d46b1677dc98f95ac303ad9f2b7c 249 Gene3D G3DSA:3.60.10.10 2 248 1.5E-43 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_2679 49b03b03be2b0ddba93a310126bdbf55 280 Gene3D G3DSA:3.40.830.10 1 280 4.1E-87 T 11-10-2018 dqs_2679 49b03b03be2b0ddba93a310126bdbf55 280 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 269 8.0E-60 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 dqs_2679 49b03b03be2b0ddba93a310126bdbf55 280 SUPERFAMILY SSF53213 2 277 7.98E-94 T 11-10-2018 dqs_0717 9e7c705fd24c1ed638e05c010193c2ad 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 190 7.9E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0717 9e7c705fd24c1ed638e05c010193c2ad 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 168 3.0E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0717 9e7c705fd24c1ed638e05c010193c2ad 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 152 3.0E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0717 9e7c705fd24c1ed638e05c010193c2ad 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 180 3.0E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0717 9e7c705fd24c1ed638e05c010193c2ad 203 SMART SM00421 135 192 3.5E-24 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0717 9e7c705fd24c1ed638e05c010193c2ad 203 ProSitePatterns PS00622 LuxR-type HTH domain signature. 152 179 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_0717 9e7c705fd24c1ed638e05c010193c2ad 203 Gene3D G3DSA:1.10.10.10 87 202 2.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0717 9e7c705fd24c1ed638e05c010193c2ad 203 SUPERFAMILY SSF46894 123 191 1.8E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_0858 fd50b02a3659a3ce36365613dbd48606 252 SMART SM00563 71 185 3.9E-35 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0858 fd50b02a3659a3ce36365613dbd48606 252 Pfam PF01553 Acyltransferase 58 182 1.1E-20 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 dqs_0858 fd50b02a3659a3ce36365613dbd48606 252 SUPERFAMILY SSF69593 10 220 1.7E-39 T 11-10-2018 dqs_3122 530bd34e7dbff3f6a408ef720483ca09 216 SUPERFAMILY SSF53335 2 202 2.93E-31 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3122 530bd34e7dbff3f6a408ef720483ca09 216 Gene3D G3DSA:3.40.50.150 2 201 2.6E-28 T 11-10-2018 dqs_3122 530bd34e7dbff3f6a408ef720483ca09 216 Pfam PF13489 Methyltransferase domain 35 157 1.1E-12 T 11-10-2018 dqs_1917 74d612a71f4a78084cd39841c53ab250 124 SUPERFAMILY SSF89232 3 123 2.35E-45 T 11-10-2018 IPR036698 TM1070-like superfamily dqs_1917 74d612a71f4a78084cd39841c53ab250 124 PIRSF PIRSF008711 1 124 1.2E-56 T 11-10-2018 IPR009794 Protein of unknown function DUF1362 dqs_1917 74d612a71f4a78084cd39841c53ab250 124 Pfam PF07100 Anabaena sensory rhodopsin transducer 4 122 8.3E-53 T 11-10-2018 IPR009794 Protein of unknown function DUF1362 dqs_1917 74d612a71f4a78084cd39841c53ab250 124 Gene3D G3DSA:2.60.290.11 1 124 5.8E-49 T 11-10-2018 IPR036698 TM1070-like superfamily dqs_1128 1dd252fac18e0969ff926143de1dec7e 282 Pfam PF01734 Patatin-like phospholipase 1 142 5.3E-16 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 dqs_1128 1dd252fac18e0969ff926143de1dec7e 282 Gene3D G3DSA:3.40.1090.10 74 171 1.4E-14 T 11-10-2018 dqs_1128 1dd252fac18e0969ff926143de1dec7e 282 Gene3D G3DSA:3.40.1090.10 1 73 1.9E-10 T 11-10-2018 dqs_1128 1dd252fac18e0969ff926143de1dec7e 282 SUPERFAMILY SSF52151 1 257 8.63E-41 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase dqs_3528 8be74310258403702847d9c05675a27c 337 SUPERFAMILY SSF51735 1 336 3.98E-96 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3528 8be74310258403702847d9c05675a27c 337 Gene3D G3DSA:3.40.50.720 3 274 2.3E-142 T 11-10-2018 dqs_3528 8be74310258403702847d9c05675a27c 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 335 6.3E-136 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 dqs_3528 8be74310258403702847d9c05675a27c 337 Gene3D G3DSA:3.90.25.10 194 329 2.3E-142 T 11-10-2018 dqs_3528 8be74310258403702847d9c05675a27c 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 5.3E-59 T 11-10-2018 IPR016040 NAD(P)-binding domain dqs_0115 7182847d33b1863a9d3b6c34d3b058a0 166 Gene3D G3DSA:3.40.30.10 1 166 1.8E-45 T 11-10-2018 dqs_0115 7182847d33b1863a9d3b6c34d3b058a0 166 Hamap MF_00269 Thiol peroxidase [tpx]. 3 166 37.891 T 11-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 dqs_0115 7182847d33b1863a9d3b6c34d3b058a0 166 Pfam PF08534 Redoxin 19 162 9.1E-26 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 dqs_0115 7182847d33b1863a9d3b6c34d3b058a0 166 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 11-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 dqs_0115 7182847d33b1863a9d3b6c34d3b058a0 166 SUPERFAMILY SSF52833 1 163 1.71E-40 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3699 e7798080c8a4227755c2e882c7189d8d 646 SUPERFAMILY SSF56935 19 646 3.05E-90 T 11-10-2018 dqs_3699 e7798080c8a4227755c2e882c7189d8d 646 Gene3D G3DSA:2.40.170.20 176 646 6.4E-57 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_3699 e7798080c8a4227755c2e882c7189d8d 646 Pfam PF00593 TonB dependent receptor 254 645 1.4E-36 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_3699 e7798080c8a4227755c2e882c7189d8d 646 Gene3D G3DSA:2.170.130.10 30 160 6.4E-23 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_3699 e7798080c8a4227755c2e882c7189d8d 646 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 155 1.2E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_3692 6e06ff8443b10ebc02649691adec154d 288 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 281 45.703 T 11-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 dqs_3692 6e06ff8443b10ebc02649691adec154d 288 Pfam PF02666 Phosphatidylserine decarboxylase 63 278 1.4E-59 T 11-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 dqs_3692 6e06ff8443b10ebc02649691adec154d 288 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 278 4.4E-76 T 11-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 dqs_1784 ed028a31006fdd4c7451859a0181d77d 159 Pfam PF09851 Short C-terminal domain 129 156 1.2E-6 T 11-10-2018 IPR018649 SHOCT domain dqs_1435 76f896c435fb1f97dcf1591a86c77038 265 Pfam PF03649 Uncharacterised protein family (UPF0014) 9 251 9.7E-86 T 11-10-2018 IPR005226 UPF0014 family dqs_1435 76f896c435fb1f97dcf1591a86c77038 265 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 9 257 5.9E-58 T 11-10-2018 IPR005226 UPF0014 family dqs_0530 f3f90ea6d7e32e71ced817f72df0e7a4 522 SUPERFAMILY SSF54001 319 475 9.48E-22 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_0530 f3f90ea6d7e32e71ced817f72df0e7a4 522 Gene3D G3DSA:3.90.1720.10 319 469 1.0E-8 T 11-10-2018 dqs_0530 f3f90ea6d7e32e71ced817f72df0e7a4 522 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 320 473 3.3E-28 T 11-10-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family dqs_0028 68d7448a03df872e2dc037480765f631 193 SUPERFAMILY SSF52317 4 188 6.59E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_0028 68d7448a03df872e2dc037480765f631 193 Gene3D G3DSA:3.40.50.880 1 192 2.6E-56 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_0028 68d7448a03df872e2dc037480765f631 193 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 187 1.5E-57 T 11-10-2018 IPR006286 Deglycase PfpI dqs_0028 68d7448a03df872e2dc037480765f631 193 Pfam PF01965 DJ-1/PfpI family 4 185 4.3E-51 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 dqs_1520 c4bc03bfb77bca4a00697db348bfd65c 124 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 1 124 18.971 T 11-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 dqs_1520 c4bc03bfb77bca4a00697db348bfd65c 124 Gene3D G3DSA:1.20.58.1610 1 124 4.4E-41 T 11-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1520 c4bc03bfb77bca4a00697db348bfd65c 124 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 21 123 8.0E-36 T 11-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_0270 fa286d39136d6da0b1e6392c31085957 192 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 44 187 2.2E-5 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like dqs_0270 fa286d39136d6da0b1e6392c31085957 192 SUPERFAMILY SSF89392 28 187 5.1E-13 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX dqs_0270 fa286d39136d6da0b1e6392c31085957 192 Gene3D G3DSA:2.50.20.10 28 190 1.0E-17 T 11-10-2018 dqs_3977 9a7f4a080ffa3d587e2d6ea3ea8879f3 341 Gene3D G3DSA:3.40.190.10 35 303 3.5E-77 T 11-10-2018 dqs_3977 9a7f4a080ffa3d587e2d6ea3ea8879f3 341 PIRSF PIRSF002825 8 340 1.3E-72 T 11-10-2018 IPR026045 Ferric binding protein dqs_3977 9a7f4a080ffa3d587e2d6ea3ea8879f3 341 Pfam PF13343 Bacterial extracellular solute-binding protein 106 286 1.2E-25 T 11-10-2018 dqs_3977 9a7f4a080ffa3d587e2d6ea3ea8879f3 341 Gene3D G3DSA:3.40.190.10 133 250 3.5E-77 T 11-10-2018 dqs_3977 9a7f4a080ffa3d587e2d6ea3ea8879f3 341 SUPERFAMILY SSF53850 27 337 1.92E-59 T 11-10-2018 dqs_2755 4ab8e3bdcdd708b2bcbeaa1570632cf4 518 SUPERFAMILY SSF46626 327 517 4.09E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2755 4ab8e3bdcdd708b2bcbeaa1570632cf4 518 Gene3D G3DSA:1.10.760.10 328 418 3.2E-5 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2336 20a08ecdc9b8b0ef5b8e81b240d58d9e 179 SUPERFAMILY SSF54001 42 166 5.56E-44 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_2336 20a08ecdc9b8b0ef5b8e81b240d58d9e 179 Pfam PF00877 NlpC/P60 family 57 163 7.1E-31 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain dqs_2336 20a08ecdc9b8b0ef5b8e81b240d58d9e 179 Gene3D G3DSA:3.90.1720.10 11 161 3.1E-46 T 11-10-2018 dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 Pfam PF00263 Bacterial type II and III secretion system protein 417 578 8.9E-40 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 PRINTS PR01032 Gene IV protein signature 505 533 4.9E-7 T 11-10-2018 dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 PRINTS PR01032 Gene IV protein signature 558 580 4.9E-7 T 11-10-2018 dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 PRINTS PR01032 Gene IV protein signature 435 458 4.9E-7 T 11-10-2018 dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 Gene3D G3DSA:3.55.50.30 162 274 8.3E-12 T 11-10-2018 dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 Gene3D G3DSA:3.30.1370.120 275 330 1.2E-8 T 11-10-2018 IPR038591 NolW-like superfamily dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 410 434 2.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 333 343 2.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 445 455 2.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 565 579 2.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 542 560 2.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family dqs_2219 0ee37ff9a3d6509d0fa0927924ffa244 675 Pfam PF03958 Bacterial type II/III secretion system short domain 273 331 3.9E-8 T 11-10-2018 IPR005644 NolW-like dqs_0806 5f536298b8bf0bd964a8e82dfe2d547f 236 SUPERFAMILY SSF110997 103 163 1.05E-8 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 dqs_0806 5f536298b8bf0bd964a8e82dfe2d547f 236 Pfam PF05036 Sporulation related domain 129 195 5.6E-8 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 dqs_1333 8c029b7e6d76117f0e57f46736b8ebe6 319 SUPERFAMILY SSF81345 11 268 1.57E-25 T 11-10-2018 IPR037294 ABC transporter, BtuC-like dqs_1333 8c029b7e6d76117f0e57f46736b8ebe6 319 Pfam PF00950 ABC 3 transport family 160 268 1.5E-19 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 dqs_1333 8c029b7e6d76117f0e57f46736b8ebe6 319 Pfam PF00950 ABC 3 transport family 14 133 8.3E-22 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 dqs_2470 de870fe6ddde370c93a708c263ead4f4 334 Pfam PF01738 Dienelactone hydrolase family 118 326 1.3E-51 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 dqs_2470 de870fe6ddde370c93a708c263ead4f4 334 Gene3D G3DSA:3.40.50.1820 91 327 1.1E-68 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2470 de870fe6ddde370c93a708c263ead4f4 334 SUPERFAMILY SSF53474 106 327 1.42E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_4053 8068bea4c6c4c0bfc25fa6d7ee2fe84f 290 SMART SM00304 233 286 2.2E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_4053 8068bea4c6c4c0bfc25fa6d7ee2fe84f 290 Gene3D G3DSA:1.20.1480.50 201 290 2.7E-14 T 11-10-2018 dqs_4053 8068bea4c6c4c0bfc25fa6d7ee2fe84f 290 Pfam PF00672 HAMP domain 235 283 3.4E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_4053 8068bea4c6c4c0bfc25fa6d7ee2fe84f 290 SUPERFAMILY SSF158472 234 283 1.7E-8 T 11-10-2018 dqs_4053 8068bea4c6c4c0bfc25fa6d7ee2fe84f 290 Pfam PF11845 Protein of unknown function (DUF3365) 13 197 5.0E-43 T 11-10-2018 IPR021796 Protein of unknown function DUF3365 dqs_3374 c3e6daba810c678db56913055fc984e9 86 SMART SM00834 1 42 8.3E-20 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain dqs_3374 c3e6daba810c678db56913055fc984e9 86 Pfam PF09723 Zinc ribbon domain 1 40 1.5E-16 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain dqs_3374 c3e6daba810c678db56913055fc984e9 86 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 2.2E-23 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain dqs_2157 d53a29a802e74d19e32266126a5a15a3 373 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 227 347 2.6E-31 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 dqs_2157 d53a29a802e74d19e32266126a5a15a3 373 SMART SM00771 223 348 2.4E-32 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 dqs_2157 d53a29a802e74d19e32266126a5a15a3 373 Gene3D G3DSA:3.30.1400.10 223 356 5.6E-22 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 dqs_2157 d53a29a802e74d19e32266126a5a15a3 373 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 227 356 2.0E-44 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 dqs_2157 d53a29a802e74d19e32266126a5a15a3 373 SUPERFAMILY SSF64383 222 355 5.75E-33 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 dqs_0215 01efdba3f4dacb58c663fd17f67f98ad 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 66 81 1.3E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_0215 01efdba3f4dacb58c663fd17f67f98ad 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 1.3E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_0215 01efdba3f4dacb58c663fd17f67f98ad 271 Pfam PF12697 Alpha/beta hydrolase family 41 261 7.7E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_0215 01efdba3f4dacb58c663fd17f67f98ad 271 Gene3D G3DSA:3.40.50.1820 9 270 6.9E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0215 01efdba3f4dacb58c663fd17f67f98ad 271 SUPERFAMILY SSF53474 15 268 1.89E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3916 b13fea159dbc01cb4eca5c82f2a2b135 413 Pfam PF00925 GTP cyclohydrolase II 221 368 7.8E-14 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 dqs_3916 b13fea159dbc01cb4eca5c82f2a2b135 413 Pfam PF12471 GTP cyclohydrolase N terminal 3 192 3.3E-81 T 11-10-2018 IPR022163 GTP cyclohydrolase N-terminal dqs_3916 b13fea159dbc01cb4eca5c82f2a2b135 413 SUPERFAMILY SSF142695 197 371 3.92E-31 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 dqs_3916 b13fea159dbc01cb4eca5c82f2a2b135 413 Gene3D G3DSA:3.40.50.10990 214 371 2.2E-31 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 Gene3D G3DSA:3.30.1330.60 53 192 2.7E-35 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 PRINTS PR01021 OMPA domain signature 120 135 2.2E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 PRINTS PR01021 OMPA domain signature 135 151 2.2E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 PRINTS PR01021 OMPA domain signature 90 112 2.2E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 135 152 5.5E-6 T 11-10-2018 dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 173 193 5.5E-6 T 11-10-2018 dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 153 172 5.5E-6 T 11-10-2018 dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 Pfam PF00691 OmpA family 90 184 1.4E-17 T 11-10-2018 IPR006665 OmpA-like domain dqs_3339 81a13edd8163bae10d9c6991b59f3621 193 SUPERFAMILY SSF103088 77 190 7.46E-34 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_0282 f22bfcc69808a68532b24c01c1d81e05 104 Pfam PF11582 Protein of unknown function (DUF3240) 4 103 1.4E-35 T 11-10-2018 IPR021634 Protein of unknown function DUF3240 dqs_0282 f22bfcc69808a68532b24c01c1d81e05 104 Gene3D G3DSA:3.30.70.120 4 104 2.1E-18 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal dqs_2738 52932f9226e8d07bd75bdc91023eba26 137 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 5 121 29.013 T 11-10-2018 IPR026592 Outer membrane protein assembly factor BamE dqs_2738 52932f9226e8d07bd75bdc91023eba26 137 Gene3D G3DSA:3.30.1450.10 36 118 6.5E-28 T 11-10-2018 IPR037873 BamE-like dqs_2738 52932f9226e8d07bd75bdc91023eba26 137 Pfam PF04355 SmpA / OmlA family 37 103 5.2E-26 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 dqs_3992 08cfd750dfca7e97c88fe74dbc4a916d 682 Pfam PF05170 AsmA family 4 569 5.9E-108 T 11-10-2018 IPR007844 AsmA dqs_2266 b409d16c25aac34b20c1aadf3bb7dc47 109 Pfam PF11743 Protein of unknown function (DUF3301) 7 98 2.7E-27 T 11-10-2018 IPR021732 Protein of unknown function DUF3301 dqs_3227 a2581012fafbd63925695b3481e7350e 338 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 294 305 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3227 a2581012fafbd63925695b3481e7350e 338 SUPERFAMILY SSF54862 108 305 1.64E-7 T 11-10-2018 dqs_3227 a2581012fafbd63925695b3481e7350e 338 Pfam PF12801 4Fe-4S binding domain 210 249 0.0012 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3227 a2581012fafbd63925695b3481e7350e 338 Pfam PF12801 4Fe-4S binding domain 98 140 5.1E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 1.1E-14 T 11-10-2018 dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.1E-14 T 11-10-2018 dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 1.1E-14 T 11-10-2018 dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 1.1E-14 T 11-10-2018 dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 Gene3D G3DSA:3.50.50.60 7 350 9.6E-114 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 SUPERFAMILY SSF51905 5 361 1.23E-62 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 Gene3D G3DSA:3.30.9.30 39 358 9.6E-114 T 11-10-2018 dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 SUPERFAMILY SSF54373 179 278 3.14E-14 T 11-10-2018 dqs_2566 911c3cb8dd99cbf1d236113cc3ec9682 397 Pfam PF01494 FAD binding domain 5 346 1.1E-26 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 dqs_1726 2c4ca17ae5076979e5cc5884dc9d3187 828 SUPERFAMILY SSF56059 18 423 6.0E-24 T 11-10-2018 dqs_1726 2c4ca17ae5076979e5cc5884dc9d3187 828 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 507 815 8.3E-71 T 11-10-2018 IPR007296 Domain of unknown function DUF403 dqs_1726 2c4ca17ae5076979e5cc5884dc9d3187 828 Pfam PF14403 Circularly permuted ATP-grasp type 2 82 457 4.6E-159 T 11-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 dqs_1726 2c4ca17ae5076979e5cc5884dc9d3187 828 Gene3D G3DSA:3.30.1490.270 354 413 8.3E-9 T 11-10-2018 dqs_1726 2c4ca17ae5076979e5cc5884dc9d3187 828 Gene3D G3DSA:3.40.50.11290 220 317 4.0E-42 T 11-10-2018 dqs_3971 26ddf762afbfe941bc3a22b744c69b37 315 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 304 9.8E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_2448 8b7bc5ac1c6267f9d7d36178688638d8 428 Pfam PF04932 O-Antigen ligase 191 350 1.5E-13 T 11-10-2018 IPR007016 O-antigen ligase-related dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 6 401 41.658 T 11-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 Pfam PF00365 Phosphofructokinase 13 291 3.5E-46 T 11-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 Gene3D G3DSA:3.40.50.450 8 402 1.1E-134 T 11-10-2018 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 Gene3D G3DSA:3.40.50.460 145 389 1.1E-134 T 11-10-2018 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 PIRSF PIRSF036483 6 420 1.2E-154 T 11-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 11 30 6.4E-16 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 182 198 6.4E-16 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 107 123 6.4E-16 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 260 282 6.4E-16 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 140 157 6.4E-16 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 dqs_1597 0eea77bb82ffa3497871c4fd2d7eb902 421 SUPERFAMILY SSF53784 4 408 8.63E-100 T 11-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 dqs_2264 310fc3efa81a2d86a86c78f32d27e96e 325 SUPERFAMILY SSF52540 71 313 5.91E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2264 310fc3efa81a2d86a86c78f32d27e96e 325 Gene3D G3DSA:3.40.50.300 66 239 2.9E-35 T 11-10-2018 dqs_2264 310fc3efa81a2d86a86c78f32d27e96e 325 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 102 238 1.1E-12 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_2264 310fc3efa81a2d86a86c78f32d27e96e 325 SMART SM00382 98 262 1.1E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3382 f3f88688cdbe77fea20d5997dee9ad4e 386 Gene3D G3DSA:2.160.20.10 25 326 6.5E-15 T 11-10-2018 IPR012334 Pectin lyase fold dqs_3382 f3f88688cdbe77fea20d5997dee9ad4e 386 SUPERFAMILY SSF51126 33 306 2.4E-26 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor dqs_2354 44d88856ee01466f00f46b5ce538ab5d 229 Pfam PF02361 Cobalt transport protein 10 201 2.1E-14 T 11-10-2018 IPR003339 ABC/ECF transporter, transmembrane component dqs_2765 165efc543e16f4df5eb4611ecda0efc3 280 SUPERFAMILY SSF103481 48 138 5.62E-5 T 11-10-2018 dqs_2765 165efc543e16f4df5eb4611ecda0efc3 280 Pfam PF00892 EamA-like transporter family 145 275 1.9E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_2765 165efc543e16f4df5eb4611ecda0efc3 280 SUPERFAMILY SSF103481 185 277 9.68E-10 T 11-10-2018 dqs_1476 0a737651e3d365b023f9c8ce99605a71 131 Pfam PF13411 MerR HTH family regulatory protein 5 70 4.7E-19 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1476 0a737651e3d365b023f9c8ce99605a71 131 SUPERFAMILY SSF46955 5 128 8.79E-31 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily dqs_1476 0a737651e3d365b023f9c8ce99605a71 131 Gene3D G3DSA:1.10.1660.10 1 127 4.6E-34 T 11-10-2018 dqs_1476 0a737651e3d365b023f9c8ce99605a71 131 SMART SM00422 5 73 2.1E-24 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1476 0a737651e3d365b023f9c8ce99605a71 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 1.3E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1476 0a737651e3d365b023f9c8ce99605a71 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 1.3E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_1476 0a737651e3d365b023f9c8ce99605a71 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 1.3E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 dqs_0509 347f05812d2bbf2c3f5c41bb4546aacf 268 Gene3D G3DSA:3.40.190.10 127 217 1.2E-53 T 11-10-2018 dqs_0509 347f05812d2bbf2c3f5c41bb4546aacf 268 SUPERFAMILY SSF53850 11 262 7.97E-45 T 11-10-2018 dqs_0509 347f05812d2bbf2c3f5c41bb4546aacf 268 SMART SM00062 39 263 2.2E-33 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_0509 347f05812d2bbf2c3f5c41bb4546aacf 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 257 4.3E-38 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF dqs_0509 347f05812d2bbf2c3f5c41bb4546aacf 268 Gene3D G3DSA:3.40.190.10 31 250 1.2E-53 T 11-10-2018 dqs_3487 34e182585c6475728426048858c8a4f1 192 SUPERFAMILY SSF55846 7 174 2.09E-65 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_3487 34e182585c6475728426048858c8a4f1 192 Gene3D G3DSA:3.40.80.10 5 177 3.9E-59 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_3487 34e182585c6475728426048858c8a4f1 192 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 25 163 6.0E-27 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_3487 34e182585c6475728426048858c8a4f1 192 SMART SM00644 14 162 3.0E-52 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 dqs_1239 475d499fd01ed713a698b8633c457552 238 Gene3D G3DSA:3.40.50.300 2 238 3.9E-60 T 11-10-2018 dqs_1239 475d499fd01ed713a698b8633c457552 238 SUPERFAMILY SSF52540 6 235 1.01E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1239 475d499fd01ed713a698b8633c457552 238 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1239 475d499fd01ed713a698b8633c457552 238 SMART SM00382 31 215 3.5E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1239 475d499fd01ed713a698b8633c457552 238 Pfam PF00005 ABC transporter 24 166 8.3E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3606 5fda088adb3c54c855540a0045dcfcd5 427 Pfam PF01979 Amidohydrolase family 53 421 3.2E-10 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 dqs_3606 5fda088adb3c54c855540a0045dcfcd5 427 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 19 423 1.0E-88 T 11-10-2018 dqs_3606 5fda088adb3c54c855540a0045dcfcd5 427 SUPERFAMILY SSF51338 1 424 5.03E-28 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_3606 5fda088adb3c54c855540a0045dcfcd5 427 Gene3D G3DSA:3.20.20.140 57 369 1.8E-106 T 11-10-2018 dqs_3606 5fda088adb3c54c855540a0045dcfcd5 427 SUPERFAMILY SSF51556 56 367 9.32E-83 T 11-10-2018 IPR032466 Metal-dependent hydrolase dqs_3606 5fda088adb3c54c855540a0045dcfcd5 427 Gene3D G3DSA:2.30.40.10 9 421 1.8E-106 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 dqs_0344 fe73db5231eb4f1acbd2f165f2fc750b 155 Gene3D G3DSA:1.20.120.520 2 151 6.2E-14 T 11-10-2018 dqs_0344 fe73db5231eb4f1acbd2f165f2fc750b 155 Pfam PF01814 Hemerythrin HHE cation binding domain 15 131 6.9E-15 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_2337 76c5f14b0ac11a929568f912232d3b82 113 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 3 91 3.5E-18 T 11-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 dqs_2337 76c5f14b0ac11a929568f912232d3b82 113 PIRSF PIRSF020408 1 106 1.1E-37 T 11-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 dqs_1997 917842c77430c677ab45ecca167518fb 89 Pfam PF02406 MmoB/DmpM family 3 85 1.9E-32 T 11-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 dqs_1997 917842c77430c677ab45ecca167518fb 89 Gene3D G3DSA:3.90.56.10 1 89 3.4E-36 T 11-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 dqs_1997 917842c77430c677ab45ecca167518fb 89 ProDom PD004249 MONOOXYGENASE COMPONENT HYDROXYLASE MMOB/DMPM PHENOL SUBUNIT 3D-STRUCTURE HYDROCARBONS IRON PHENOLHYDROXYLASE 8 83 4.0E-29 T 11-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 dqs_1997 917842c77430c677ab45ecca167518fb 89 SUPERFAMILY SSF56029 3 88 1.44E-32 T 11-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 dqs_0532 1b9933ae81498bc12cb4c228d027cad1 175 Gene3D G3DSA:2.60.40.200 23 175 2.1E-45 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 dqs_0532 1b9933ae81498bc12cb4c228d027cad1 175 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 33 172 1.8E-33 T 11-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 dqs_0532 1b9933ae81498bc12cb4c228d027cad1 175 SUPERFAMILY SSF49329 25 172 2.36E-39 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 dqs_0532 1b9933ae81498bc12cb4c228d027cad1 175 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 161 172 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 dqs_1556 d81695f5ca629d33177b260025a4b993 107 Gene3D G3DSA:1.10.760.10 27 103 1.2E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1556 d81695f5ca629d33177b260025a4b993 107 Pfam PF00034 Cytochrome c 33 100 7.3E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1556 d81695f5ca629d33177b260025a4b993 107 SUPERFAMILY SSF46626 9 101 4.15E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 219 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 129 157 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 SUPERFAMILY SSF51735 6 237 5.97E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 Gene3D G3DSA:3.40.50.720 2 240 8.0E-64 T 11-10-2018 dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 235 7.2E-44 T 11-10-2018 dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 70 81 5.1E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 5.1E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_2144 f7eb8a30a595ef689e9c2c10cbb7d549 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 5.1E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR dqs_1271 f7560caf94a81ce09c33d20452dcbb56 262 Gene3D G3DSA:3.20.20.150 1 261 3.1E-83 T 11-10-2018 dqs_1271 f7560caf94a81ce09c33d20452dcbb56 262 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 7.4E-38 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain dqs_1271 f7560caf94a81ce09c33d20452dcbb56 262 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 254 6.1E-119 T 11-10-2018 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 dqs_1271 f7560caf94a81ce09c33d20452dcbb56 262 PIRSF PIRSF006241 1 260 6.1E-97 T 11-10-2018 IPR026040 Hydroxypyruvate isomerase-like dqs_1271 f7560caf94a81ce09c33d20452dcbb56 262 SUPERFAMILY SSF51658 1 256 2.23E-89 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily dqs_2756 64b96c904586ee25b99db5d100092cf9 499 SUPERFAMILY SSF46626 324 499 2.56E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_2756 64b96c904586ee25b99db5d100092cf9 499 Pfam PF00034 Cytochrome c 332 499 2.5E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2756 64b96c904586ee25b99db5d100092cf9 499 Gene3D G3DSA:1.10.760.10 328 499 9.2E-7 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1909 d3929b4a015302e6736ad41485246923 276 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 48 257 2.0E-44 T 11-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related dqs_3965 f5e821d575598599ee322bcbc1861204 199 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 7 190 4.4E-19 T 11-10-2018 IPR003111 Lon, substrate-binding domain dqs_3965 f5e821d575598599ee322bcbc1861204 199 Gene3D G3DSA:1.10.4060.10 119 198 5.0E-14 T 11-10-2018 dqs_3965 f5e821d575598599ee322bcbc1861204 199 SUPERFAMILY SSF88697 6 190 2.16E-45 T 11-10-2018 IPR015947 PUA-like superfamily dqs_3965 f5e821d575598599ee322bcbc1861204 199 SMART SM00464 6 191 4.2E-10 T 11-10-2018 IPR003111 Lon, substrate-binding domain dqs_3965 f5e821d575598599ee322bcbc1861204 199 Gene3D G3DSA:2.30.130.40 4 114 3.4E-36 T 11-10-2018 dqs_0900 d4569016a159a8321428d64e66d7cd13 294 Gene3D G3DSA:1.10.10.60 158 261 4.3E-12 T 11-10-2018 dqs_0900 d4569016a159a8321428d64e66d7cd13 294 SMART SM00342 170 254 0.0014 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_0900 d4569016a159a8321428d64e66d7cd13 294 Pfam PF12833 Helix-turn-helix domain 174 255 4.4E-12 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 Gene3D G3DSA:3.50.50.60 2 352 7.6E-160 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 1 390 8.5E-195 T 11-10-2018 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 Pfam PF01494 FAD binding domain 3 344 1.9E-84 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 SUPERFAMILY SSF51905 1 391 6.17E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 SUPERFAMILY SSF54373 176 276 2.43E-46 T 11-10-2018 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 Gene3D G3DSA:3.30.9.10 73 387 7.6E-160 T 11-10-2018 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 6.2E-28 T 11-10-2018 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 6.2E-28 T 11-10-2018 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 6.2E-28 T 11-10-2018 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 329 6.2E-28 T 11-10-2018 dqs_2592 1fb68e59bf5d9e970dbe2410040872e5 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 6.2E-28 T 11-10-2018 dqs_0746 9ccaf9277a8a0241a3b120d3f8812444 285 Pfam PF00005 ABC transporter 60 215 6.6E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0746 9ccaf9277a8a0241a3b120d3f8812444 285 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 44 285 4.4E-115 T 11-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD dqs_0746 9ccaf9277a8a0241a3b120d3f8812444 285 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 263 284 2.9E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_0746 9ccaf9277a8a0241a3b120d3f8812444 285 SUPERFAMILY SSF52540 43 283 2.24E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0746 9ccaf9277a8a0241a3b120d3f8812444 285 Gene3D G3DSA:3.40.50.300 40 285 1.2E-48 T 11-10-2018 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 SUPERFAMILY SSF55785 54 122 2.86E-8 T 11-10-2018 IPR035965 PAS domain superfamily dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 SUPERFAMILY SSF55874 217 380 2.75E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 Gene3D G3DSA:3.30.565.10 227 382 1.7E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 SUPERFAMILY SSF47384 149 225 9.61E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 Pfam PF13188 PAS domain 54 96 2.5E-6 T 11-10-2018 IPR000014 PAS domain dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 269 377 3.1E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 Pfam PF00512 His Kinase A (phospho-acceptor) domain 162 226 8.3E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 Gene3D G3DSA:1.10.287.130 151 224 1.7E-12 T 11-10-2018 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 Gene3D G3DSA:3.30.450.20 44 150 4.8E-6 T 11-10-2018 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 357 7.4E-21 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 324 7.4E-21 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 338 7.4E-21 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 376 7.4E-21 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 SMART SM00388 161 227 3.5E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 dqs_2850 82a5e4c64e062364001ee0e04f0ab9d3 393 SMART SM00387 269 379 4.7E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase dqs_3327 1abe02122df1717e8ad1170aebc1c194 148 SUPERFAMILY SSF54637 12 148 6.21E-43 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_3327 1abe02122df1717e8ad1170aebc1c194 148 PRINTS PR01483 Fatty acid synthase signature 55 76 2.5E-5 T 11-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 dqs_3327 1abe02122df1717e8ad1170aebc1c194 148 PRINTS PR01483 Fatty acid synthase signature 33 55 2.5E-5 T 11-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 dqs_3327 1abe02122df1717e8ad1170aebc1c194 148 Pfam PF01575 MaoC like domain 24 122 1.7E-24 T 11-10-2018 IPR002539 MaoC-like dehydratase domain dqs_3327 1abe02122df1717e8ad1170aebc1c194 148 Gene3D G3DSA:3.10.129.10 8 148 5.3E-49 T 11-10-2018 dqs_0770 eaed4c5e6014dda78d6282002e81be16 451 Gene3D G3DSA:3.20.20.300 80 429 7.0E-77 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 dqs_0770 eaed4c5e6014dda78d6282002e81be16 451 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 113 403 4.7E-46 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 dqs_0770 eaed4c5e6014dda78d6282002e81be16 451 SUPERFAMILY SSF51445 109 427 7.69E-53 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_3211 c5fdc6d8cd29684ddb78bc076e302273 96 Pfam PF01402 Ribbon-helix-helix protein, copG family 4 41 2.9E-7 T 11-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 dqs_3211 c5fdc6d8cd29684ddb78bc076e302273 96 SUPERFAMILY SSF47598 1 59 2.04E-9 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 dqs_3211 c5fdc6d8cd29684ddb78bc076e302273 96 Gene3D G3DSA:1.10.1220.10 4 48 4.9E-5 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 dqs_3283 0e0fce402e6554d86b7e7428a07fa755 121 Pfam PF11304 Protein of unknown function (DUF3106) 7 106 1.7E-34 T 11-10-2018 IPR021455 Protein of unknown function DUF3106 dqs_0599 0a63fcf7713dd2b5d4a27d0d25df9e98 146 SUPERFAMILY SSF46689 14 129 9.5E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_0599 0a63fcf7713dd2b5d4a27d0d25df9e98 146 Pfam PF08765 Mor transcription activator family 59 132 2.1E-8 T 11-10-2018 IPR014875 Mor transcription activator dqs_1797 b4575ca43febeedf2123f3e4571beb50 792 Pfam PF13481 AAA domain 440 608 4.6E-18 T 11-10-2018 dqs_1797 b4575ca43febeedf2123f3e4571beb50 792 SUPERFAMILY SSF52540 450 658 6.07E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1797 b4575ca43febeedf2123f3e4571beb50 792 Gene3D G3DSA:3.40.50.300 434 649 2.5E-26 T 11-10-2018 dqs_3663 f9f74cf1bc91c81459361943894d0c66 298 SUPERFAMILY SSF53807 21 287 1.65E-70 T 11-10-2018 dqs_3663 f9f74cf1bc91c81459361943894d0c66 298 Gene3D G3DSA:3.40.50.1980 40 158 1.2E-37 T 11-10-2018 dqs_3663 f9f74cf1bc91c81459361943894d0c66 298 Pfam PF01497 Periplasmic binding protein 44 268 1.5E-30 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain dqs_3663 f9f74cf1bc91c81459361943894d0c66 298 Gene3D G3DSA:3.40.50.1980 162 291 1.9E-33 T 11-10-2018 dqs_3228 431b3bfee1121eb0c50c01f35897ab02 703 Gene3D G3DSA:3.40.50.410 507 686 3.2E-13 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_3228 431b3bfee1121eb0c50c01f35897ab02 703 SMART SM00327 512 702 9.2E-16 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_3228 431b3bfee1121eb0c50c01f35897ab02 703 SUPERFAMILY SSF53300 518 694 7.91E-18 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_3228 431b3bfee1121eb0c50c01f35897ab02 703 Pfam PF00092 von Willebrand factor type A domain 550 665 1.9E-5 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_4129 6ce7c75ed7c0736abb42fbb86230e78a 284 Gene3D G3DSA:3.40.50.150 44 279 3.0E-66 T 11-10-2018 dqs_4129 6ce7c75ed7c0736abb42fbb86230e78a 284 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 1 272 29.728 T 11-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 dqs_4129 6ce7c75ed7c0736abb42fbb86230e78a 284 Pfam PF01564 Spermine/spermidine synthase domain 48 223 4.8E-41 T 11-10-2018 dqs_4129 6ce7c75ed7c0736abb42fbb86230e78a 284 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 65 78 - T 11-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 dqs_4129 6ce7c75ed7c0736abb42fbb86230e78a 284 SUPERFAMILY SSF53335 9 271 6.16E-67 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2274 7545642d80952021854acc57a919f6d4 120 Pfam PF00877 NlpC/P60 family 10 114 4.4E-24 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain dqs_2274 7545642d80952021854acc57a919f6d4 120 SUPERFAMILY SSF54001 2 116 3.09E-33 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily dqs_2274 7545642d80952021854acc57a919f6d4 120 Gene3D G3DSA:3.90.1720.10 1 110 1.4E-34 T 11-10-2018 dqs_2431 51eb8cb9fbf51e162339f704885f8ce3 369 SUPERFAMILY SSF110296 2 354 4.05E-58 T 11-10-2018 dqs_2431 51eb8cb9fbf51e162339f704885f8ce3 369 Gene3D G3DSA:2.130.10.10 1 369 5.7E-106 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_0943 dd4c3e73bf5e1a32d93b80bb922c48f9 278 Gene3D G3DSA:3.40.1010.10 1 107 8.1E-40 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 dqs_0943 dd4c3e73bf5e1a32d93b80bb922c48f9 278 PIRSF PIRSF005917 1 273 1.2E-97 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 dqs_0943 dd4c3e73bf5e1a32d93b80bb922c48f9 278 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 1 269 5.2E-76 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 dqs_0943 dd4c3e73bf5e1a32d93b80bb922c48f9 278 SUPERFAMILY SSF53790 1 219 2.88E-76 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 dqs_0943 dd4c3e73bf5e1a32d93b80bb922c48f9 278 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 200 1.7E-27 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 dqs_0943 dd4c3e73bf5e1a32d93b80bb922c48f9 278 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 1 221 33.861 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 dqs_0943 dd4c3e73bf5e1a32d93b80bb922c48f9 278 Gene3D G3DSA:3.30.950.10 108 227 3.5E-39 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 dqs_0744 4fef865a9a51271fed1b6c23010a2c5b 539 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 245 535 5.2E-123 T 11-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type dqs_0744 4fef865a9a51271fed1b6c23010a2c5b 539 Pfam PF02653 Branched-chain amino acid transport system / permease component 246 521 1.9E-47 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_2623 e2128686e8d542416f3e33be936bd0ac 380 Gene3D G3DSA:1.10.540.10 12 120 7.0E-6 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 dqs_2623 e2128686e8d542416f3e33be936bd0ac 380 Gene3D G3DSA:2.40.110.10 135 228 2.4E-10 T 11-10-2018 dqs_2623 e2128686e8d542416f3e33be936bd0ac 380 SUPERFAMILY SSF56645 15 230 4.06E-26 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 dqs_1893 92cd24a1fa6b5e476c04b847c8469ca1 274 SUPERFAMILY SSF53187 20 253 5.34E-49 T 11-10-2018 dqs_1893 92cd24a1fa6b5e476c04b847c8469ca1 274 Gene3D G3DSA:3.40.630.40 21 255 8.0E-67 T 11-10-2018 dqs_1893 92cd24a1fa6b5e476c04b847c8469ca1 274 Pfam PF05013 N-formylglutamate amidohydrolase 26 229 3.2E-23 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase dqs_2295 977f408819522c21ab9e4c2db587efc6 542 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 65 224 3.3E-25 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like dqs_2706 dde700f189579b10150a17dc9e547181 293 SUPERFAMILY SSF54909 1 284 2.32E-77 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_2706 dde700f189579b10150a17dc9e547181 293 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 283 1.1E-62 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 dqs_2706 dde700f189579b10150a17dc9e547181 293 Pfam PF04261 Dyp-type peroxidase family 46 281 3.1E-42 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 dqs_0485 b0b89ffc80fd07b8fea5d9eb75574124 253 Gene3D G3DSA:3.30.70.1070 178 251 8.6E-10 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 dqs_0485 b0b89ffc80fd07b8fea5d9eb75574124 253 Pfam PF05036 Sporulation related domain 183 247 9.1E-10 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 dqs_0485 b0b89ffc80fd07b8fea5d9eb75574124 253 SUPERFAMILY SSF110997 183 247 1.83E-13 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 dqs_1646 89c9ce44676963530ce39e774075b9b2 231 Gene3D G3DSA:3.40.50.150 29 222 1.6E-32 T 11-10-2018 dqs_1646 89c9ce44676963530ce39e774075b9b2 231 Pfam PF02390 Putative methyltransferase 55 216 3.6E-14 T 11-10-2018 dqs_1646 89c9ce44676963530ce39e774075b9b2 231 SUPERFAMILY SSF53335 41 218 5.16E-18 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1467 d414aaa84859b1a3ce44e096314488a7 171 Pfam PF05751 FixH 15 154 2.6E-40 T 11-10-2018 IPR008620 Nitrogen fixation protein FixH dqs_1952 0c02e7be5c35762ce00d1ee512b7e8d7 321 Pfam PF00534 Glycosyl transferases group 1 207 297 1.7E-10 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_1952 0c02e7be5c35762ce00d1ee512b7e8d7 321 Gene3D G3DSA:3.40.50.2000 170 320 1.4E-18 T 11-10-2018 dqs_1952 0c02e7be5c35762ce00d1ee512b7e8d7 321 SUPERFAMILY SSF53756 61 318 5.02E-23 T 11-10-2018 dqs_1547 8f364892ad715dce871faec32e84452d 71 Gene3D G3DSA:1.20.58.660 1 67 5.5E-6 T 11-10-2018 dqs_1547 8f364892ad715dce871faec32e84452d 71 Pfam PF04325 Protein of unknown function (DUF465) 17 61 9.2E-15 T 11-10-2018 IPR007420 Protein of unknown function DUF465 dqs_0268 42f82d23d2dcb9bd2da8b573f3a7bae2 233 SUPERFAMILY SSF53474 25 231 1.4E-15 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0268 42f82d23d2dcb9bd2da8b573f3a7bae2 233 Gene3D G3DSA:3.40.50.1820 21 230 2.0E-12 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2473 361625c55d70257cc6bbcb1b296ce16e 192 Gene3D G3DSA:3.40.30.10 23 189 4.4E-29 T 11-10-2018 dqs_2473 361625c55d70257cc6bbcb1b296ce16e 192 SUPERFAMILY SSF52833 21 188 2.97E-31 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2473 361625c55d70257cc6bbcb1b296ce16e 192 Pfam PF00578 AhpC/TSA family 25 167 5.5E-23 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_0913 8d6c86b4a2f32661a46235af8432bda2 535 SMART SM01057 314 535 6.2E-84 T 11-10-2018 IPR001148 Alpha carbonic anhydrase domain dqs_0913 8d6c86b4a2f32661a46235af8432bda2 535 Gene3D G3DSA:3.10.200.10 307 535 7.2E-65 T 11-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily dqs_0913 8d6c86b4a2f32661a46235af8432bda2 535 SUPERFAMILY SSF51069 313 531 6.8E-64 T 11-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily dqs_0913 8d6c86b4a2f32661a46235af8432bda2 535 Pfam PF00194 Eukaryotic-type carbonic anhydrase 313 533 2.9E-33 T 11-10-2018 IPR001148 Alpha carbonic anhydrase domain dqs_1063 5004084d9e7777dfda374551247d2a59 259 Gene3D G3DSA:1.10.4080.10 1 242 1.9E-49 T 11-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily dqs_1063 5004084d9e7777dfda374551247d2a59 259 SUPERFAMILY SSF101478 1 229 7.45E-52 T 11-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily dqs_1063 5004084d9e7777dfda374551247d2a59 259 Pfam PF03747 ADP-ribosylglycohydrolase 1 228 2.6E-32 T 11-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 dqs_2173 195568959f146999ec13adf26007a292 160 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 133 8.5E-65 T 11-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 dqs_2173 195568959f146999ec13adf26007a292 160 Pfam PF02082 Transcriptional regulator 1 83 8.8E-28 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type dqs_2173 195568959f146999ec13adf26007a292 160 SUPERFAMILY SSF46785 2 132 2.54E-37 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_2173 195568959f146999ec13adf26007a292 160 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 3.6E-45 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type dqs_2173 195568959f146999ec13adf26007a292 160 Gene3D G3DSA:1.10.10.10 1 140 6.9E-51 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2391 053d483fc85f5235557d66bff864630f 384 Pfam PF06433 Methylamine dehydrogenase heavy chain (MADH) 44 380 1.3E-50 T 11-10-2018 IPR009451 Amine dehydrogenase heavy chain GO:0030058|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 dqs_2391 053d483fc85f5235557d66bff864630f 384 SUPERFAMILY SSF50969 14 381 3.65E-86 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like dqs_2391 053d483fc85f5235557d66bff864630f 384 Gene3D G3DSA:2.130.10.10 15 384 2.4E-126 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_3839 830d0d7f0d4d389e28110c2defdbaeeb 209 SUPERFAMILY SSF53335 18 206 1.82E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3839 830d0d7f0d4d389e28110c2defdbaeeb 209 Gene3D G3DSA:3.40.50.150 10 207 3.0E-23 T 11-10-2018 dqs_3839 830d0d7f0d4d389e28110c2defdbaeeb 209 Pfam PF06080 Protein of unknown function (DUF938) 14 208 1.7E-68 T 11-10-2018 IPR010342 Protein of unknown function DUF938 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 Gene3D G3DSA:1.10.630.10 2 387 3.2E-106 T 11-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 Pfam PF00067 Cytochrome P450 27 352 4.7E-16 T 11-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 262 273 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 77 88 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 337 348 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 140 155 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 123 139 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 328 337 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 181 203 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 279 306 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 PRINTS PR00359 B-class P450 signature 307 322 2.3E-36 T 11-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 dqs_2684 e5b583ec3199c79ea9348b9c9a695fc9 387 SUPERFAMILY SSF48264 6 383 1.57E-78 T 11-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 dqs_3059 046108a32d0e1f300df935c0dc637020 76 Gene3D G3DSA:3.30.110.40 1 76 1.3E-28 T 11-10-2018 IPR036868 TusA-like domain superfamily dqs_3059 046108a32d0e1f300df935c0dc637020 76 Pfam PF01206 Sulfurtransferase TusA 5 74 4.9E-24 T 11-10-2018 IPR001455 TusA-like domain dqs_3059 046108a32d0e1f300df935c0dc637020 76 SUPERFAMILY SSF64307 2 75 1.57E-24 T 11-10-2018 IPR036868 TusA-like domain superfamily dqs_3059 046108a32d0e1f300df935c0dc637020 76 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 7 31 - T 11-10-2018 IPR001455 TusA-like domain dqs_3403 4b515d0d547eabc0780195e6483a0a57 301 Pfam PF00535 Glycosyl transferase family 2 13 147 2.9E-11 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_3403 4b515d0d547eabc0780195e6483a0a57 301 Gene3D G3DSA:3.90.550.10 5 190 4.3E-18 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3403 4b515d0d547eabc0780195e6483a0a57 301 SUPERFAMILY SSF53448 11 215 3.75E-21 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3585 0bd2c93b7e1ed41e23768e5acbf60c31 280 SMART SM00382 43 235 3.2E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3585 0bd2c93b7e1ed41e23768e5acbf60c31 280 SUPERFAMILY SSF52540 16 256 4.51E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3585 0bd2c93b7e1ed41e23768e5acbf60c31 280 Gene3D G3DSA:3.40.50.300 15 259 1.5E-53 T 11-10-2018 dqs_3585 0bd2c93b7e1ed41e23768e5acbf60c31 280 Pfam PF00005 ABC transporter 34 185 2.2E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2814 0cdfb21b6ae049745f628d03d36ccfb5 370 SUPERFAMILY SSF51395 1 370 9.77E-121 T 11-10-2018 dqs_2814 0cdfb21b6ae049745f628d03d36ccfb5 370 Gene3D G3DSA:3.20.20.70 1 370 6.2E-155 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2814 0cdfb21b6ae049745f628d03d36ccfb5 370 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 348 7.3E-83 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 dqs_0534 d36382b05e828d679afb21fa0b02aa44 96 Pfam PF12838 4Fe-4S dicluster domain 9 58 5.3E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_0534 d36382b05e828d679afb21fa0b02aa44 96 Gene3D G3DSA:3.30.70.20 2 69 2.0E-23 T 11-10-2018 dqs_0534 d36382b05e828d679afb21fa0b02aa44 96 SUPERFAMILY SSF54862 6 64 7.5E-17 T 11-10-2018 dqs_0534 d36382b05e828d679afb21fa0b02aa44 96 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_2940 6f4da6794e5c3b272950f2b9541f61d0 416 PIRSF PIRSF000412 1 416 1.6E-165 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 dqs_2940 6f4da6794e5c3b272950f2b9541f61d0 416 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 415 51.827 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 dqs_2940 6f4da6794e5c3b272950f2b9541f61d0 416 Gene3D G3DSA:3.90.1150.10 10 393 9.6E-184 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_2940 6f4da6794e5c3b272950f2b9541f61d0 416 Pfam PF00464 Serine hydroxymethyltransferase 8 384 5.9E-169 T 11-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 dqs_2940 6f4da6794e5c3b272950f2b9541f61d0 416 Gene3D G3DSA:3.40.640.10 37 286 9.6E-184 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_2940 6f4da6794e5c3b272950f2b9541f61d0 416 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 11-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 dqs_2940 6f4da6794e5c3b272950f2b9541f61d0 416 SUPERFAMILY SSF53383 4 415 1.25E-177 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_2096 87931423f5a8e1210f59105fbe0be2a3 525 SUPERFAMILY SSF54373 330 446 1.69E-5 T 11-10-2018 dqs_2096 87931423f5a8e1210f59105fbe0be2a3 525 Gene3D G3DSA:3.50.50.60 412 520 1.9E-9 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2096 87931423f5a8e1210f59105fbe0be2a3 525 Gene3D G3DSA:3.50.50.60 199 322 1.4E-5 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2096 87931423f5a8e1210f59105fbe0be2a3 525 Pfam PF05199 GMC oxidoreductase 454 511 6.3E-14 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 dqs_2096 87931423f5a8e1210f59105fbe0be2a3 525 Gene3D G3DSA:3.50.50.60 3 171 1.1E-14 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2096 87931423f5a8e1210f59105fbe0be2a3 525 Pfam PF00732 GMC oxidoreductase 9 302 8.9E-15 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 dqs_2096 87931423f5a8e1210f59105fbe0be2a3 525 SUPERFAMILY SSF51905 8 520 8.27E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3401 6881c0030b7605fff79b4d4ff58836b5 391 SUPERFAMILY SSF50965 29 233 1.09E-13 T 11-10-2018 IPR011043 Galactose oxidase/kelch, beta-propeller dqs_0919 ad355710e6e735bf37fe1cf579f049a0 217 Gene3D G3DSA:3.40.50.150 1 209 1.3E-52 T 11-10-2018 dqs_0919 ad355710e6e735bf37fe1cf579f049a0 217 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 10 196 1.3E-39 T 11-10-2018 dqs_0919 ad355710e6e735bf37fe1cf579f049a0 217 SUPERFAMILY SSF53335 1 200 3.1E-47 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2351 37c6cae46be5f36be63d60e5153e2c85 243 Pfam PF10670 Domain of unknown function (DUF4198) 28 209 3.2E-16 T 11-10-2018 IPR019613 Protein of unknown function DUF4198 dqs_3270 d09db5913039e9f5a778a9db7acfe010 229 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 3 224 2.4E-68 T 11-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 dqs_3270 d09db5913039e9f5a778a9db7acfe010 229 SUPERFAMILY SSF52540 14 207 5.1E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3270 d09db5913039e9f5a778a9db7acfe010 229 Gene3D G3DSA:1.10.8.60 159 224 2.0E-22 T 11-10-2018 dqs_3270 d09db5913039e9f5a778a9db7acfe010 229 Pfam PF00308 Bacterial dnaA protein 92 205 1.5E-9 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA dqs_3270 d09db5913039e9f5a778a9db7acfe010 229 Gene3D G3DSA:3.40.50.300 37 156 1.0E-20 T 11-10-2018 dqs_3673 752a90f5deb826e168cd7a5087f2ff6b 309 Pfam PF01903 CbiX 11 114 3.7E-18 T 11-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 dqs_3673 752a90f5deb826e168cd7a5087f2ff6b 309 Pfam PF01903 CbiX 139 242 5.7E-17 T 11-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 dqs_3673 752a90f5deb826e168cd7a5087f2ff6b 309 SUPERFAMILY SSF53800 4 245 4.11E-40 T 11-10-2018 dqs_3673 752a90f5deb826e168cd7a5087f2ff6b 309 Gene3D G3DSA:3.40.50.1400 129 247 4.5E-16 T 11-10-2018 dqs_3673 752a90f5deb826e168cd7a5087f2ff6b 309 Gene3D G3DSA:3.40.50.1400 3 124 2.4E-21 T 11-10-2018 dqs_2643 582d725053d1620d68f648485dfad4e4 129 PRINTS PR00421 Thioredoxin family signature 30 39 1.3E-5 T 11-10-2018 dqs_2643 582d725053d1620d68f648485dfad4e4 129 PRINTS PR00421 Thioredoxin family signature 69 80 1.3E-5 T 11-10-2018 dqs_2643 582d725053d1620d68f648485dfad4e4 129 PRINTS PR00421 Thioredoxin family signature 22 30 1.3E-5 T 11-10-2018 dqs_2643 582d725053d1620d68f648485dfad4e4 129 SUPERFAMILY SSF52833 8 101 9.81E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2643 582d725053d1620d68f648485dfad4e4 129 Pfam PF00085 Thioredoxin 12 85 8.1E-15 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 dqs_2643 582d725053d1620d68f648485dfad4e4 129 Gene3D G3DSA:3.40.30.10 3 100 4.8E-16 T 11-10-2018 dqs_3008 d2ad40b6b4b045a7324a5035660f7c29 184 SUPERFAMILY SSF81342 9 181 2.2E-36 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 dqs_3008 d2ad40b6b4b045a7324a5035660f7c29 184 Pfam PF01292 Prokaryotic cytochrome b561 11 181 4.0E-29 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 dqs_3750 0d315d6315fc1bdd03c92cc365287f4e 227 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 11 227 30.354 T 11-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 dqs_3750 0d315d6315fc1bdd03c92cc365287f4e 227 Gene3D G3DSA:3.40.50.620 13 227 6.3E-62 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold dqs_3750 0d315d6315fc1bdd03c92cc365287f4e 227 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 15 226 1.1E-49 T 11-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 dqs_3750 0d315d6315fc1bdd03c92cc365287f4e 227 Pfam PF01467 Cytidylyltransferase-like 15 199 2.4E-27 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 dqs_3750 0d315d6315fc1bdd03c92cc365287f4e 227 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 14 76 5.8E-9 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 dqs_3750 0d315d6315fc1bdd03c92cc365287f4e 227 SUPERFAMILY SSF52374 13 227 3.1E-54 T 11-10-2018 dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 SMART SM00052 601 842 6.6E-64 T 11-10-2018 IPR001633 EAL domain dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 Gene3D G3DSA:3.30.70.270 422 595 2.9E-54 T 11-10-2018 dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 Gene3D G3DSA:3.30.450.290 38 169 1.4E-7 T 11-10-2018 dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 Pfam PF00563 EAL domain 609 837 2.2E-63 T 11-10-2018 IPR001633 EAL domain dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 Pfam PF00990 Diguanylate cyclase, GGDEF domain 428 586 3.4E-45 T 11-10-2018 IPR000160 GGDEF domain dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 Gene3D G3DSA:3.20.20.450 602 842 2.9E-73 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 SUPERFAMILY SSF141868 610 837 1.28E-68 T 11-10-2018 IPR035919 EAL domain superfamily dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 SUPERFAMILY SSF55073 433 591 3.92E-47 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 424 589 2.4E-53 T 11-10-2018 IPR000160 GGDEF domain dqs_1599 d69961fb62b4bf4d10976199327e62b4 856 SMART SM00267 417 590 5.3E-60 T 11-10-2018 IPR000160 GGDEF domain dqs_2743 a9ca6c0b957c948eda0f0da147ce1436 363 Hamap MF_00323 Ferrochelatase [hemH]. 16 335 37.782 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 dqs_2743 a9ca6c0b957c948eda0f0da147ce1436 363 Gene3D G3DSA:3.40.50.1400 18 332 2.0E-96 T 11-10-2018 dqs_2743 a9ca6c0b957c948eda0f0da147ce1436 363 ProSitePatterns PS00534 Ferrochelatase signature. 204 222 - T 11-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 dqs_2743 a9ca6c0b957c948eda0f0da147ce1436 363 TIGRFAM TIGR00109 hemH: ferrochelatase 15 333 2.8E-94 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 dqs_2743 a9ca6c0b957c948eda0f0da147ce1436 363 SUPERFAMILY SSF53800 16 341 1.0E-110 T 11-10-2018 dqs_2743 a9ca6c0b957c948eda0f0da147ce1436 363 Gene3D G3DSA:3.40.50.1400 178 316 2.0E-96 T 11-10-2018 dqs_2743 a9ca6c0b957c948eda0f0da147ce1436 363 Pfam PF00762 Ferrochelatase 17 334 7.0E-116 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 dqs_0686 07cd5c9975d10ffa07efec0ef2e46dcf 80 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 47 1.4E-8 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain dqs_0686 07cd5c9975d10ffa07efec0ef2e46dcf 80 Gene3D G3DSA:1.10.10.1100 1 57 1.0E-19 T 11-10-2018 dqs_3425 f59fd93e0c1bbdda84726b70d634abf9 249 SUPERFAMILY SSF52540 3 229 1.33E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3425 f59fd93e0c1bbdda84726b70d634abf9 249 Gene3D G3DSA:3.40.50.300 1 247 1.6E-73 T 11-10-2018 dqs_3425 f59fd93e0c1bbdda84726b70d634abf9 249 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3425 f59fd93e0c1bbdda84726b70d634abf9 249 SMART SM00382 32 228 9.9E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3425 f59fd93e0c1bbdda84726b70d634abf9 249 Pfam PF00005 ABC transporter 23 173 5.1E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_2567 d755895b951e6ac234d0b784b81e02af 213 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 211 1.1E-87 T 11-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 dqs_2567 d755895b951e6ac234d0b784b81e02af 213 SUPERFAMILY SSF47616 80 212 1.56E-30 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily dqs_2567 d755895b951e6ac234d0b784b81e02af 213 Gene3D G3DSA:3.40.30.10 1 86 2.1E-28 T 11-10-2018 dqs_2567 d755895b951e6ac234d0b784b81e02af 213 Gene3D G3DSA:1.20.1050.10 87 213 1.7E-51 T 11-10-2018 dqs_2567 d755895b951e6ac234d0b784b81e02af 213 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 80 3.2E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 dqs_2567 d755895b951e6ac234d0b784b81e02af 213 SUPERFAMILY SSF52833 1 83 9.56E-26 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2407 69d8405eff079027792d4ec7fd92eb5d 262 Pfam PF07722 Peptidase C26 25 233 8.3E-51 T 11-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 dqs_2407 69d8405eff079027792d4ec7fd92eb5d 262 SUPERFAMILY SSF52317 61 255 1.72E-36 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_2407 69d8405eff079027792d4ec7fd92eb5d 262 Gene3D G3DSA:3.40.50.880 6 261 6.1E-63 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_1573 9773c460097ff3b3b2d7a48d8f664c70 357 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 14 66 2.5E-18 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain dqs_1573 9773c460097ff3b3b2d7a48d8f664c70 357 SUPERFAMILY SSF103088 180 287 3.01E-18 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_1573 9773c460097ff3b3b2d7a48d8f664c70 357 Gene3D G3DSA:3.30.1330.60 130 310 2.1E-55 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_1573 9773c460097ff3b3b2d7a48d8f664c70 357 Pfam PF00691 OmpA family 183 279 2.7E-12 T 11-10-2018 IPR006665 OmpA-like domain dqs_2763 2ad264f7e5518ec61e015dd4c2bd54b0 85 SUPERFAMILY SSF50249 1 71 4.0E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_2763 2ad264f7e5518ec61e015dd4c2bd54b0 85 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 6.7E-30 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 dqs_2763 2ad264f7e5518ec61e015dd4c2bd54b0 85 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 1.0E-22 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 dqs_2763 2ad264f7e5518ec61e015dd4c2bd54b0 85 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 75 25.351 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 dqs_2763 2ad264f7e5518ec61e015dd4c2bd54b0 85 Gene3D G3DSA:2.40.50.140 1 71 3.5E-29 T 11-10-2018 dqs_0084 04794ea449ab1b9eeba4bedec863b28a 563 SMART SM00327 194 370 1.6E-28 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_0084 04794ea449ab1b9eeba4bedec863b28a 563 Pfam PF12034 Domain of unknown function (DUF3520) 372 552 7.6E-63 T 11-10-2018 IPR021908 Protein of unknown function DUF3520 dqs_0084 04794ea449ab1b9eeba4bedec863b28a 563 Gene3D G3DSA:3.40.50.410 195 372 2.8E-34 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_0084 04794ea449ab1b9eeba4bedec863b28a 563 Pfam PF12450 von Willebrand factor 88 179 3.0E-37 T 11-10-2018 IPR022156 Uncharacterised protein YfbK, N-terminal dqs_0084 04794ea449ab1b9eeba4bedec863b28a 563 Pfam PF00092 von Willebrand factor type A domain 196 363 2.2E-20 T 11-10-2018 IPR002035 von Willebrand factor, type A dqs_0084 04794ea449ab1b9eeba4bedec863b28a 563 SUPERFAMILY SSF53300 193 365 1.7E-36 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_0703 5a00e68dc01407add4492f6ff27f22cb 98 Gene3D G3DSA:1.10.20.30 1 43 7.1E-12 T 11-10-2018 dqs_0703 5a00e68dc01407add4492f6ff27f22cb 98 SUPERFAMILY SSF102829 4 92 3.4E-20 T 11-10-2018 IPR036192 Cell division protein ZapA-like superfamily dqs_0703 5a00e68dc01407add4492f6ff27f22cb 98 Pfam PF05164 Cell division protein ZapA 5 87 4.7E-18 T 11-10-2018 IPR007838 Cell division protein ZapA-like dqs_0703 5a00e68dc01407add4492f6ff27f22cb 98 Gene3D G3DSA:1.20.5.50 47 96 1.9E-5 T 11-10-2018 dqs_3021 320cd3e85c93641df5d8dd6b96f37089 238 SUPERFAMILY SSF53474 7 237 3.46E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3021 320cd3e85c93641df5d8dd6b96f37089 238 Gene3D G3DSA:3.40.50.1820 1 235 1.3E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3021 320cd3e85c93641df5d8dd6b96f37089 238 Pfam PF12697 Alpha/beta hydrolase family 8 218 4.1E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_3907 fa7eefd0c4ce6525947a228fa26b2796 431 Pfam PF08886 Glutamate-cysteine ligase 17 419 3.0E-198 T 11-10-2018 IPR011718 Glutamate--cysteine ligase GshA dqs_3907 fa7eefd0c4ce6525947a228fa26b2796 431 SUPERFAMILY SSF56059 265 356 2.43E-5 T 11-10-2018 dqs_3907 fa7eefd0c4ce6525947a228fa26b2796 431 TIGRFAM TIGR02049 gshA_ferroox: glutamate--cysteine ligase 17 422 3.4E-187 T 11-10-2018 IPR011718 Glutamate--cysteine ligase GshA dqs_3907 fa7eefd0c4ce6525947a228fa26b2796 431 Gene3D G3DSA:3.40.50.11280 65 204 3.4E-49 T 11-10-2018 dqs_3905 6a660eb751d373770b05cefc63d8ef8e 349 Pfam PF02424 ApbE family 38 304 6.2E-71 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 dqs_3905 6a660eb751d373770b05cefc63d8ef8e 349 PIRSF PIRSF006268 4 340 6.5E-83 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 dqs_3905 6a660eb751d373770b05cefc63d8ef8e 349 SUPERFAMILY SSF143631 30 337 8.63E-76 T 11-10-2018 IPR003374 ApbE-like superfamily dqs_3905 6a660eb751d373770b05cefc63d8ef8e 349 Gene3D G3DSA:3.10.520.20 23 345 7.4E-84 T 11-10-2018 dqs_3222 d9c8c18b5e71d7463301be22551540f6 154 Gene3D G3DSA:1.20.120.520 2 151 8.1E-25 T 11-10-2018 dqs_3222 d9c8c18b5e71d7463301be22551540f6 154 Pfam PF01814 Hemerythrin HHE cation binding domain 5 126 2.0E-21 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_0917 3efc4a01c3cb6f72455b4a1268efdb57 363 Gene3D G3DSA:2.40.420.20 278 348 3.3E-63 T 11-10-2018 dqs_0917 3efc4a01c3cb6f72455b4a1268efdb57 363 Gene3D G3DSA:2.40.50.100 57 203 3.3E-63 T 11-10-2018 dqs_0917 3efc4a01c3cb6f72455b4a1268efdb57 363 Gene3D G3DSA:2.40.30.170 47 277 3.3E-63 T 11-10-2018 dqs_0917 3efc4a01c3cb6f72455b4a1268efdb57 363 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 264 1.4E-19 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_0917 3efc4a01c3cb6f72455b4a1268efdb57 363 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 350 2.4E-63 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_0917 3efc4a01c3cb6f72455b4a1268efdb57 363 Gene3D G3DSA:1.10.287.470 91 163 3.3E-63 T 11-10-2018 dqs_0917 3efc4a01c3cb6f72455b4a1268efdb57 363 SUPERFAMILY SSF111369 49 263 6.15E-19 T 11-10-2018 dqs_3714 650f6f970c7f6767d4f790b921918952 485 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 304 468 3.9E-9 T 11-10-2018 dqs_3714 650f6f970c7f6767d4f790b921918952 485 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 83 183 4.7E-7 T 11-10-2018 dqs_3714 650f6f970c7f6767d4f790b921918952 485 Gene3D G3DSA:1.10.510.10 386 468 4.3E-7 T 11-10-2018 dqs_3714 650f6f970c7f6767d4f790b921918952 485 SUPERFAMILY SSF56112 296 477 2.87E-15 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_3714 650f6f970c7f6767d4f790b921918952 485 SUPERFAMILY SSF56112 63 251 2.73E-14 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily dqs_3714 650f6f970c7f6767d4f790b921918952 485 Gene3D G3DSA:1.10.510.10 130 277 3.0E-5 T 11-10-2018 dqs_0808 5fb0b6bf62adb6e5be64da3b124d4c44 242 Gene3D G3DSA:3.30.930.10 1 192 8.5E-52 T 11-10-2018 dqs_0808 5fb0b6bf62adb6e5be64da3b124d4c44 242 SUPERFAMILY SSF50037 194 239 1.37E-9 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal dqs_0808 5fb0b6bf62adb6e5be64da3b124d4c44 242 Pfam PF02237 Biotin protein ligase C terminal domain 198 239 2.0E-8 T 11-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_0808 5fb0b6bf62adb6e5be64da3b124d4c44 242 Gene3D G3DSA:2.30.30.100 193 242 1.6E-15 T 11-10-2018 dqs_0808 5fb0b6bf62adb6e5be64da3b124d4c44 242 Pfam PF03099 Biotin/lipoate A/B protein ligase family 14 129 4.0E-13 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 dqs_0808 5fb0b6bf62adb6e5be64da3b124d4c44 242 SUPERFAMILY SSF55681 3 190 1.62E-48 T 11-10-2018 dqs_0808 5fb0b6bf62adb6e5be64da3b124d4c44 242 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 2 239 4.9E-51 T 11-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 dqs_3704 a9dbb8e2cec954615f6295386ed1e64a 256 Pfam PF02654 Cobalamin-5-phosphate synthase 11 246 1.4E-52 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 dqs_3704 a9dbb8e2cec954615f6295386ed1e64a 256 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 256 52.699 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 dqs_3704 a9dbb8e2cec954615f6295386ed1e64a 256 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 7 248 6.1E-34 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 dqs_0401 f7ff7d5c333d92385a65ac25eb764078 342 Gene3D G3DSA:3.60.15.10 21 282 1.4E-61 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0401 f7ff7d5c333d92385a65ac25eb764078 342 SMART SM00849 40 254 4.0E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_0401 f7ff7d5c333d92385a65ac25eb764078 342 Pfam PF00753 Metallo-beta-lactamase superfamily 39 254 1.8E-24 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_0401 f7ff7d5c333d92385a65ac25eb764078 342 Gene3D G3DSA:1.10.10.10 284 338 9.3E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_0401 f7ff7d5c333d92385a65ac25eb764078 342 SUPERFAMILY SSF56281 6 327 6.29E-73 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3045 ef2360289d603f50ff1bf6d616922002 145 Pfam PF04364 DNA polymerase III chi subunit, HolC 2 134 1.9E-34 T 11-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 dqs_3045 ef2360289d603f50ff1bf6d616922002 145 SUPERFAMILY SSF102400 2 138 2.35E-36 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily dqs_3045 ef2360289d603f50ff1bf6d616922002 145 Gene3D G3DSA:3.40.50.10110 1 138 4.5E-35 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily dqs_0955 9efbe77c3b78faef374d7142099424c9 356 Gene3D G3DSA:3.40.50.2000 158 335 2.3E-115 T 11-10-2018 dqs_0955 9efbe77c3b78faef374d7142099424c9 356 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 345 2.5E-102 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0955 9efbe77c3b78faef374d7142099424c9 356 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 141 3.3E-33 T 11-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0955 9efbe77c3b78faef374d7142099424c9 356 SUPERFAMILY SSF53756 2 352 2.03E-122 T 11-10-2018 dqs_0955 9efbe77c3b78faef374d7142099424c9 356 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 181 338 5.2E-36 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 dqs_0955 9efbe77c3b78faef374d7142099424c9 356 Gene3D G3DSA:3.40.50.2000 5 341 2.3E-115 T 11-10-2018 dqs_0955 9efbe77c3b78faef374d7142099424c9 356 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 4 351 36.072 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0500 d4af8e2b82c98a95b7765e05602868e8 268 SUPERFAMILY SSF53474 13 264 1.79E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0500 d4af8e2b82c98a95b7765e05602868e8 268 Gene3D G3DSA:3.40.50.1820 15 265 2.2E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0500 d4af8e2b82c98a95b7765e05602868e8 268 Pfam PF12697 Alpha/beta hydrolase family 26 257 7.6E-21 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_4115 4fc937e216437fa3f5992fb4a17c32bc 195 SUPERFAMILY SSF53335 3 168 8.37E-27 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_4115 4fc937e216437fa3f5992fb4a17c32bc 195 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 5 192 6.3E-73 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 dqs_4115 4fc937e216437fa3f5992fb4a17c32bc 195 Pfam PF07021 Methionine biosynthesis protein MetW 5 192 1.7E-68 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 dqs_4115 4fc937e216437fa3f5992fb4a17c32bc 195 Gene3D G3DSA:3.40.50.150 8 174 8.8E-24 T 11-10-2018 dqs_0149 2273ae2c0f54490e4470cdb565d44c96 389 Pfam PF08495 FIST N domain 43 216 1.1E-23 T 11-10-2018 IPR013702 FIST domain, N-terminal dqs_0149 2273ae2c0f54490e4470cdb565d44c96 389 Pfam PF10442 FIST C domain 237 372 5.1E-29 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 dqs_0149 2273ae2c0f54490e4470cdb565d44c96 389 SMART SM00897 40 218 8.9E-36 T 11-10-2018 IPR013702 FIST domain, N-terminal dqs_0149 2273ae2c0f54490e4470cdb565d44c96 389 SMART SM01204 219 373 1.5E-33 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 dqs_3106 68e2ff4b4633c4f212561da6eccd0d12 444 SUPERFAMILY SSF55874 315 434 1.72E-16 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3106 68e2ff4b4633c4f212561da6eccd0d12 444 Pfam PF07730 Histidine kinase 238 305 2.1E-13 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 dqs_3106 68e2ff4b4633c4f212561da6eccd0d12 444 Gene3D G3DSA:1.10.287.130 169 299 2.7E-8 T 11-10-2018 dqs_3106 68e2ff4b4633c4f212561da6eccd0d12 444 Gene3D G3DSA:3.30.565.10 309 436 4.8E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily dqs_3106 68e2ff4b4633c4f212561da6eccd0d12 444 SMART SM00304 170 222 0.0016 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1078 d738e9d3cdc45089ede1370d287e7a6c 87 SUPERFAMILY SSF46689 1 66 2.87E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 dqs_1078 d738e9d3cdc45089ede1370d287e7a6c 87 Pfam PF01527 Transposase 2 70 1.0E-16 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 dqs_1078 d738e9d3cdc45089ede1370d287e7a6c 87 Gene3D G3DSA:1.10.10.60 8 75 4.4E-5 T 11-10-2018 dqs_2141 70d438dee21ce5c7b1fda45e286c9d40 392 SUPERFAMILY SSF53901 25 372 5.41E-21 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_2141 70d438dee21ce5c7b1fda45e286c9d40 392 PIRSF PIRSF000429 12 375 2.2E-16 T 11-10-2018 IPR002155 Thiolase GO:0016747 dqs_2141 70d438dee21ce5c7b1fda45e286c9d40 392 Gene3D G3DSA:3.40.47.10 12 389 9.3E-83 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_1062 60fdf9f2e03858c8fd6567706d829119 321 Pfam PF13280 WYL domain 144 315 1.9E-33 T 11-10-2018 IPR026881 WYL domain dqs_1892 12d6c0316ec7d96571334a9e281ffcd8 229 Pfam PF07589 PEP-CTERM motif 204 226 3.1E-7 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_1892 12d6c0316ec7d96571334a9e281ffcd8 229 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 205 224 8.3E-4 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_2093 032fc42ff65d2b8a4d4c5c7088135cc6 432 Gene3D G3DSA:3.30.9.40 78 290 1.6E-117 T 11-10-2018 dqs_2093 032fc42ff65d2b8a4d4c5c7088135cc6 432 SUPERFAMILY SSF51905 16 375 7.51E-21 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2093 032fc42ff65d2b8a4d4c5c7088135cc6 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 319 2.6E-9 T 11-10-2018 dqs_2093 032fc42ff65d2b8a4d4c5c7088135cc6 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 164 179 2.6E-9 T 11-10-2018 dqs_2093 032fc42ff65d2b8a4d4c5c7088135cc6 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 319 335 2.6E-9 T 11-10-2018 dqs_2093 032fc42ff65d2b8a4d4c5c7088135cc6 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 16 38 2.6E-9 T 11-10-2018 dqs_2093 032fc42ff65d2b8a4d4c5c7088135cc6 432 Gene3D G3DSA:3.50.50.60 17 341 1.6E-117 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3176 8473e3138b7e9b060e97a43dd94fdc19 326 SUPERFAMILY SSF51735 113 277 1.62E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3176 8473e3138b7e9b060e97a43dd94fdc19 326 SUPERFAMILY SSF50129 1 140 2.59E-41 T 11-10-2018 IPR011032 GroES-like superfamily dqs_3176 8473e3138b7e9b060e97a43dd94fdc19 326 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 11-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 dqs_3176 8473e3138b7e9b060e97a43dd94fdc19 326 Gene3D G3DSA:3.90.180.10 13 318 1.1E-99 T 11-10-2018 dqs_3176 8473e3138b7e9b060e97a43dd94fdc19 326 Pfam PF00107 Zinc-binding dehydrogenase 151 280 4.4E-32 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 dqs_3176 8473e3138b7e9b060e97a43dd94fdc19 326 SMART SM00829 10 322 1.0E-56 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 dqs_3176 8473e3138b7e9b060e97a43dd94fdc19 326 Gene3D G3DSA:3.40.50.720 123 267 1.1E-99 T 11-10-2018 dqs_3176 8473e3138b7e9b060e97a43dd94fdc19 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 106 3.7E-13 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 dqs_2697 83d514f1ba0ec820994949c5e0f9e75d 311 Pfam PF09130 Domain of unknown function (DUF1932) 200 271 2.9E-18 T 11-10-2018 IPR015814 Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal dqs_2697 83d514f1ba0ec820994949c5e0f9e75d 311 Gene3D G3DSA:1.10.1040.10 181 290 1.1E-38 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 dqs_2697 83d514f1ba0ec820994949c5e0f9e75d 311 Gene3D G3DSA:3.40.50.720 11 179 1.5E-32 T 11-10-2018 dqs_2697 83d514f1ba0ec820994949c5e0f9e75d 311 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 12 128 2.8E-9 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 dqs_2697 83d514f1ba0ec820994949c5e0f9e75d 311 SUPERFAMILY SSF51735 11 171 5.77E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2697 83d514f1ba0ec820994949c5e0f9e75d 311 SUPERFAMILY SSF48179 173 283 6.97E-33 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 dqs_3892 4312d9ae9c7e271c41453050299b68b8 231 Gene3D G3DSA:2.40.160.20 23 231 3.7E-70 T 11-10-2018 dqs_3892 4312d9ae9c7e271c41453050299b68b8 231 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 223 231 - T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 dqs_3892 4312d9ae9c7e271c41453050299b68b8 231 Pfam PF03922 OmpW family 24 231 2.2E-61 T 11-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 dqs_3892 4312d9ae9c7e271c41453050299b68b8 231 SUPERFAMILY SSF56925 24 231 2.88E-29 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel dqs_3884 866c6f39f6ae9825b040c22158edc2f9 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_3884 866c6f39f6ae9825b040c22158edc2f9 257 SUPERFAMILY SSF52540 4 250 6.68E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3884 866c6f39f6ae9825b040c22158edc2f9 257 SMART SM00382 29 237 1.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3884 866c6f39f6ae9825b040c22158edc2f9 257 Pfam PF00005 ABC transporter 20 180 1.3E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_3884 866c6f39f6ae9825b040c22158edc2f9 257 Gene3D G3DSA:3.40.50.300 1 252 9.8E-60 T 11-10-2018 dqs_3884 866c6f39f6ae9825b040c22158edc2f9 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 1.9E-8 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_0908 dc4845d6543e22b1df4a49e30cea811c 127 TIGRFAM TIGR00494 crcB: protein CrcB 8 121 2.2E-24 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 dqs_0908 dc4845d6543e22b1df4a49e30cea811c 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 123 17.924 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 dqs_0908 dc4845d6543e22b1df4a49e30cea811c 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 8 118 2.4E-21 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 dqs_0260 35f957c0cbe5c0182c56d00cbc95ebe0 473 Gene3D G3DSA:2.20.200.10 107 360 6.5E-137 T 11-10-2018 dqs_0260 35f957c0cbe5c0182c56d00cbc95ebe0 473 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 471 7.5E-120 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 dqs_0260 35f957c0cbe5c0182c56d00cbc95ebe0 473 Gene3D G3DSA:1.20.1600.10 61 471 6.5E-137 T 11-10-2018 dqs_0260 35f957c0cbe5c0182c56d00cbc95ebe0 473 SUPERFAMILY SSF56954 3 471 1.7E-108 T 11-10-2018 dqs_0260 35f957c0cbe5c0182c56d00cbc95ebe0 473 Pfam PF02321 Outer membrane efflux protein 71 260 4.4E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0260 35f957c0cbe5c0182c56d00cbc95ebe0 473 Pfam PF02321 Outer membrane efflux protein 287 469 4.6E-28 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0429 5c87a3d6703d4e3ded6e4806d6bdf71e 280 Gene3D G3DSA:3.30.1150.10 166 279 3.9E-26 T 11-10-2018 dqs_0429 5c87a3d6703d4e3ded6e4806d6bdf71e 280 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 219 277 2.3E-8 T 11-10-2018 IPR006260 TonB/TolA, C-terminal dqs_0429 5c87a3d6703d4e3ded6e4806d6bdf71e 280 PRINTS PR01217 Proline rich extensin signature 49 70 4.5E-11 T 11-10-2018 dqs_0429 5c87a3d6703d4e3ded6e4806d6bdf71e 280 PRINTS PR01217 Proline rich extensin signature 70 86 4.5E-11 T 11-10-2018 dqs_0429 5c87a3d6703d4e3ded6e4806d6bdf71e 280 PRINTS PR01217 Proline rich extensin signature 88 105 4.5E-11 T 11-10-2018 dqs_0429 5c87a3d6703d4e3ded6e4806d6bdf71e 280 PRINTS PR01217 Proline rich extensin signature 109 134 4.5E-11 T 11-10-2018 dqs_0429 5c87a3d6703d4e3ded6e4806d6bdf71e 280 SUPERFAMILY SSF74653 181 277 7.19E-17 T 11-10-2018 dqs_0429 5c87a3d6703d4e3ded6e4806d6bdf71e 280 Pfam PF13103 TonB C terminal 192 275 2.1E-19 T 11-10-2018 dqs_0495 4be8f7867d6046ded5bb2e6d2ffc97b7 288 Gene3D G3DSA:3.30.70.1230 1 166 2.2E-18 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0495 4be8f7867d6046ded5bb2e6d2ffc97b7 288 SUPERFAMILY SSF49879 165 272 4.97E-15 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 dqs_0495 4be8f7867d6046ded5bb2e6d2ffc97b7 288 Gene3D G3DSA:2.60.200.20 167 285 1.7E-12 T 11-10-2018 dqs_0495 4be8f7867d6046ded5bb2e6d2ffc97b7 288 Pfam PF00498 FHA domain 205 248 5.4E-9 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_0495 4be8f7867d6046ded5bb2e6d2ffc97b7 288 SUPERFAMILY SSF55073 4 161 8.16E-22 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_0495 4be8f7867d6046ded5bb2e6d2ffc97b7 288 SMART SM00240 202 251 6.8E-5 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 dqs_2909 52aa8dc898346d9e4b9bba2cfd903ef2 160 Pfam PF00293 NUDIX domain 17 133 7.3E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 dqs_2909 52aa8dc898346d9e4b9bba2cfd903ef2 160 Gene3D G3DSA:3.90.79.10 12 160 3.1E-39 T 11-10-2018 dqs_2909 52aa8dc898346d9e4b9bba2cfd903ef2 160 SUPERFAMILY SSF55811 11 156 1.62E-27 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_1942 2cd451ba858ef52f0cd28083150ef4b7 431 Pfam PF15887 Putative zinc-binding metallo-peptidase 175 417 2.8E-95 T 11-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase dqs_1942 2cd451ba858ef52f0cd28083150ef4b7 431 Pfam PF10005 zinc-ribbon domain 4 54 3.8E-11 T 11-10-2018 IPR011201 Zinc-ribbon domain, bacteria dqs_1942 2cd451ba858ef52f0cd28083150ef4b7 431 Pfam PF10005 zinc-ribbon domain 124 169 4.2E-8 T 11-10-2018 IPR011201 Zinc-ribbon domain, bacteria dqs_1942 2cd451ba858ef52f0cd28083150ef4b7 431 PIRSF PIRSF012641 1 85 8.7E-4 T 11-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase dqs_1942 2cd451ba858ef52f0cd28083150ef4b7 431 PIRSF PIRSF012641 97 430 3.0E-114 T 11-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase dqs_2055 c388aaf83de2ac097644724aebd24bd8 166 SUPERFAMILY SSF111384 22 162 5.62E-36 T 11-10-2018 dqs_2055 c388aaf83de2ac097644724aebd24bd8 166 Pfam PF03938 Outer membrane protein (OmpH-like) 9 162 6.6E-38 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 dqs_2055 c388aaf83de2ac097644724aebd24bd8 166 PIRSF PIRSF002094 1 166 2.1E-50 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 dqs_2055 c388aaf83de2ac097644724aebd24bd8 166 Gene3D G3DSA:3.30.910.20 21 162 2.2E-41 T 11-10-2018 IPR024930 Skp domain superfamily dqs_2055 c388aaf83de2ac097644724aebd24bd8 166 SMART SM00935 11 163 1.3E-58 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 dqs_3882 7df8a7de71ca78dcd72939e9b4a7629b 310 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 294 8.4E-48 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_0267 e94ba52b0c4cebe6ce14babfaad3f50a 232 Pfam PF01522 Polysaccharide deacetylase 39 156 1.7E-22 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 dqs_0267 e94ba52b0c4cebe6ce14babfaad3f50a 232 Gene3D G3DSA:3.20.20.370 28 232 2.7E-43 T 11-10-2018 dqs_0267 e94ba52b0c4cebe6ce14babfaad3f50a 232 SUPERFAMILY SSF88713 9 230 9.64E-47 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 dqs_1543 d273decda5b54355b34ff376ece22534 283 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 274 1.5E-11 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase dqs_1543 d273decda5b54355b34ff376ece22534 283 SUPERFAMILY SSF56219 1 282 1.26E-32 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_1543 d273decda5b54355b34ff376ece22534 283 Gene3D G3DSA:3.60.10.10 1 283 2.4E-46 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_1346 366b330f8242469955fac4260590ebf7 380 PIRSF PIRSF000267 3 379 4.1E-120 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 dqs_1346 366b330f8242469955fac4260590ebf7 380 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 8 363 3.4E-109 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 dqs_1346 366b330f8242469955fac4260590ebf7 380 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 3 380 3.7E-145 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 dqs_3099 3bce68f99821864fa0a478da1713c776 306 Pfam PF09828 Chromate resistance exported protein 173 300 3.4E-45 T 11-10-2018 IPR018634 Chromate resistance exported protein dqs_1376 1fe2a5ef46b6b04ae321f9305a6f810b 308 Gene3D G3DSA:3.10.310.50 36 176 9.0E-41 T 11-10-2018 dqs_1376 1fe2a5ef46b6b04ae321f9305a6f810b 308 Pfam PF04536 TPM domain 47 170 7.6E-32 T 11-10-2018 IPR007621 TPM domain dqs_3735 0dd4aebbd541e0c630a136c7459d130c 261 SUPERFAMILY SSF51735 4 211 9.03E-10 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_3735 0dd4aebbd541e0c630a136c7459d130c 261 Gene3D G3DSA:3.40.50.720 3 250 2.4E-10 T 11-10-2018 dqs_1262 c6b97fd6694f2b4133ce9f13d4dd90f0 244 Pfam PF04172 LrgB-like family 23 236 3.8E-80 T 11-10-2018 IPR007300 CidB/LrgB family dqs_2929 dcd4d9aa12281436f03bf793b77605bd 446 Pfam PF01523 Putative modulator of DNA gyrase 33 323 5.8E-62 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 dqs_2929 dcd4d9aa12281436f03bf793b77605bd 446 SUPERFAMILY SSF111283 12 446 1.96E-133 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 dqs_2929 dcd4d9aa12281436f03bf793b77605bd 446 Gene3D G3DSA:3.30.2290.10 3 232 2.9E-94 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal dqs_0172 47f3ac3f0442573a08c15e53155c7290 140 Gene3D G3DSA:3.30.2020.30 4 102 6.1E-30 T 11-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 dqs_0172 47f3ac3f0442573a08c15e53155c7290 140 Pfam PF06155 Protein of unknown function (DUF971) 14 98 1.2E-30 T 11-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 dqs_0278 aaa667997b851935d0e8ef479998f993 90 Pfam PF13670 Peptidase propeptide and YPEB domain 6 87 9.7E-34 T 11-10-2018 IPR025711 PepSY domain dqs_2494 3bc8aa3f6b511c6b3ac34132efa87a39 227 Gene3D G3DSA:3.10.100.10 40 191 1.2E-7 T 11-10-2018 IPR016186 C-type lectin-like/link domain superfamily dqs_2494 3bc8aa3f6b511c6b3ac34132efa87a39 227 SUPERFAMILY SSF56436 34 204 1.85E-25 T 11-10-2018 IPR016187 C-type lectin fold dqs_0043 e3a1aae65a54b941e7556825509faf18 162 Gene3D G3DSA:2.60.120.10 22 159 2.2E-34 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_0043 e3a1aae65a54b941e7556825509faf18 162 Pfam PF12973 ChrR Cupin-like domain 31 118 5.2E-13 T 11-10-2018 IPR025979 ChrR-like cupin domain dqs_0043 e3a1aae65a54b941e7556825509faf18 162 SUPERFAMILY SSF51182 24 146 1.25E-26 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_2512 41116ffab41218081453521d58c3e44d 539 Gene3D G3DSA:3.40.250.10 258 363 3.2E-20 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2512 41116ffab41218081453521d58c3e44d 539 SMART SM00450 278 374 2.3E-5 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2512 41116ffab41218081453521d58c3e44d 539 SMART SM00450 389 484 1.7E-7 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2512 41116ffab41218081453521d58c3e44d 539 SMART SM00450 142 240 1.5E-4 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2512 41116ffab41218081453521d58c3e44d 539 SMART SM00450 19 116 3.7E-10 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2512 41116ffab41218081453521d58c3e44d 539 SUPERFAMILY SSF52821 387 535 2.36E-26 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2512 41116ffab41218081453521d58c3e44d 539 SUPERFAMILY SSF52821 117 246 3.27E-30 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2512 41116ffab41218081453521d58c3e44d 539 Gene3D G3DSA:3.40.250.10 25 121 1.4E-17 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2512 41116ffab41218081453521d58c3e44d 539 SUPERFAMILY SSF52821 268 363 6.42E-20 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2512 41116ffab41218081453521d58c3e44d 539 Pfam PF00581 Rhodanese-like domain 26 112 9.5E-7 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2512 41116ffab41218081453521d58c3e44d 539 Pfam PF00581 Rhodanese-like domain 291 363 5.7E-7 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2512 41116ffab41218081453521d58c3e44d 539 Pfam PF00581 Rhodanese-like domain 143 236 4.7E-9 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2512 41116ffab41218081453521d58c3e44d 539 Pfam PF00581 Rhodanese-like domain 391 479 1.7E-5 T 11-10-2018 IPR001763 Rhodanese-like domain dqs_2512 41116ffab41218081453521d58c3e44d 539 Gene3D G3DSA:3.40.250.10 138 245 1.1E-21 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2512 41116ffab41218081453521d58c3e44d 539 SUPERFAMILY SSF52821 25 132 1.01E-20 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2512 41116ffab41218081453521d58c3e44d 539 Gene3D G3DSA:3.40.250.10 386 492 4.2E-18 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_3100 e3d9c48cd74bf42712335d3d65fbc82c 228 Gene3D G3DSA:2.60.120.10 8 228 2.2E-89 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3100 e3d9c48cd74bf42712335d3d65fbc82c 228 Pfam PF02678 Pirin 10 119 3.5E-35 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 dqs_3100 e3d9c48cd74bf42712335d3d65fbc82c 228 Gene3D G3DSA:2.60.120.10 11 135 2.2E-89 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_3100 e3d9c48cd74bf42712335d3d65fbc82c 228 SUPERFAMILY SSF51182 1 227 1.7E-74 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3100 e3d9c48cd74bf42712335d3d65fbc82c 228 PIRSF PIRSF006232 1 226 1.6E-50 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 dqs_0140 705578c9fe98e4cd351aa2c4769a1fdf 67 Gene3D G3DSA:3.30.429.10 1 67 2.6E-25 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_0140 705578c9fe98e4cd351aa2c4769a1fdf 67 SUPERFAMILY SSF55331 2 64 1.23E-22 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily dqs_0140 705578c9fe98e4cd351aa2c4769a1fdf 67 Pfam PF01361 Tautomerase enzyme 2 55 4.3E-21 T 11-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 dqs_0140 705578c9fe98e4cd351aa2c4769a1fdf 67 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 63 4.7E-19 T 11-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 dqs_1903 b7db7349c687706155cae24179995eca 469 SMART SM00155 382 409 5.2E-5 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 dqs_1903 b7db7349c687706155cae24179995eca 469 SMART SM00155 196 223 1.1E-4 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 dqs_1903 b7db7349c687706155cae24179995eca 469 SUPERFAMILY SSF56024 75 298 1.07E-43 T 11-10-2018 dqs_1903 b7db7349c687706155cae24179995eca 469 SUPERFAMILY SSF56024 277 454 5.38E-43 T 11-10-2018 dqs_1903 b7db7349c687706155cae24179995eca 469 Pfam PF13091 PLD-like domain 310 435 1.8E-26 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 dqs_1903 b7db7349c687706155cae24179995eca 469 Pfam PF13091 PLD-like domain 111 224 1.1E-10 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 dqs_1903 b7db7349c687706155cae24179995eca 469 Gene3D G3DSA:3.30.870.10 93 296 1.5E-41 T 11-10-2018 dqs_1903 b7db7349c687706155cae24179995eca 469 Gene3D G3DSA:3.30.870.10 299 446 2.4E-28 T 11-10-2018 dqs_3490 94d0c2ba5ff251751dd26b87f932ffb9 300 SUPERFAMILY SSF52540 4 230 5.44E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3490 94d0c2ba5ff251751dd26b87f932ffb9 300 SMART SM00382 35 218 7.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_3490 94d0c2ba5ff251751dd26b87f932ffb9 300 Gene3D G3DSA:3.40.50.300 1 239 1.1E-56 T 11-10-2018 dqs_3490 94d0c2ba5ff251751dd26b87f932ffb9 300 Pfam PF00005 ABC transporter 26 168 1.3E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_4073 2abe44e405598a9e015429b753d71137 197 SUPERFAMILY SSF52833 8 184 2.27E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_4073 2abe44e405598a9e015429b753d71137 197 ProSitePatterns PS00194 Thioredoxin family active site. 65 83 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_4073 2abe44e405598a9e015429b753d71137 197 Gene3D G3DSA:3.40.30.10 23 196 1.2E-37 T 11-10-2018 dqs_4073 2abe44e405598a9e015429b753d71137 197 Pfam PF08534 Redoxin 37 180 6.3E-13 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 dqs_4005 6301c3dfffa934b5fdea6731c1eff670 72 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 2 67 6.0E-32 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor dqs_4005 6301c3dfffa934b5fdea6731c1eff670 72 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 61 2.0E-20 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor dqs_3667 31b91896b740bfc893d5deca07b1e712 218 Gene3D G3DSA:3.40.109.10 2 191 9.4E-49 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 dqs_3667 31b91896b740bfc893d5deca07b1e712 218 SUPERFAMILY SSF55469 17 215 3.8E-50 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 dqs_3667 31b91896b740bfc893d5deca07b1e712 218 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 9 207 1.1E-77 T 11-10-2018 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5523 dqs_3667 31b91896b740bfc893d5deca07b1e712 218 Pfam PF00881 Nitroreductase family 21 185 2.3E-32 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 dqs_0875 353b18c1453eedb797d4bd1f7dbe120a 529 Gene3D G3DSA:3.55.50.30 56 135 8.8E-9 T 11-10-2018 dqs_0875 353b18c1453eedb797d4bd1f7dbe120a 529 PRINTS PR00811 Bacterial general secretion pathway protein D signature 304 328 9.6E-18 T 11-10-2018 IPR001775 GspD/PilQ family dqs_0875 353b18c1453eedb797d4bd1f7dbe120a 529 PRINTS PR00811 Bacterial general secretion pathway protein D signature 451 469 9.6E-18 T 11-10-2018 IPR001775 GspD/PilQ family dqs_0875 353b18c1453eedb797d4bd1f7dbe120a 529 PRINTS PR00811 Bacterial general secretion pathway protein D signature 248 258 9.6E-18 T 11-10-2018 IPR001775 GspD/PilQ family dqs_0875 353b18c1453eedb797d4bd1f7dbe120a 529 PRINTS PR00811 Bacterial general secretion pathway protein D signature 474 488 9.6E-18 T 11-10-2018 IPR001775 GspD/PilQ family dqs_0875 353b18c1453eedb797d4bd1f7dbe120a 529 Pfam PF00263 Bacterial type II and III secretion system protein 309 486 1.9E-39 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 dqs_0875 353b18c1453eedb797d4bd1f7dbe120a 529 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 432 465 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 dqs_0875 353b18c1453eedb797d4bd1f7dbe120a 529 Pfam PF07655 Secretin N-terminal domain 139 215 3.8E-5 T 11-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 dqs_1623 247a15816d81a319f485fa0c8d44b00b 285 SUPERFAMILY SSF81901 154 259 9.02E-11 T 11-10-2018 dqs_1623 247a15816d81a319f485fa0c8d44b00b 285 SMART SM00671 176 211 6.9 T 11-10-2018 IPR006597 Sel1-like repeat dqs_1623 247a15816d81a319f485fa0c8d44b00b 285 SMART SM00671 216 251 0.12 T 11-10-2018 IPR006597 Sel1-like repeat dqs_1623 247a15816d81a319f485fa0c8d44b00b 285 Gene3D G3DSA:1.25.40.10 135 262 3.2E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1269 08f70d62512cd07fbe13abe36ca75a66 321 Gene3D G3DSA:3.40.190.290 91 289 3.5E-70 T 11-10-2018 dqs_1269 08f70d62512cd07fbe13abe36ca75a66 321 Pfam PF03466 LysR substrate binding domain 90 289 7.1E-45 T 11-10-2018 IPR005119 LysR, substrate-binding dqs_1269 08f70d62512cd07fbe13abe36ca75a66 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.7E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 dqs_1269 08f70d62512cd07fbe13abe36ca75a66 321 SUPERFAMILY SSF46785 3 111 2.94E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily dqs_1269 08f70d62512cd07fbe13abe36ca75a66 321 SUPERFAMILY SSF53850 90 294 8.87E-48 T 11-10-2018 dqs_1269 08f70d62512cd07fbe13abe36ca75a66 321 Gene3D G3DSA:1.10.10.10 3 86 1.8E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily dqs_2282 1ce97f8910a16906066001569c2a56bd 661 Gene3D G3DSA:3.30.300.30 531 659 1.3E-14 T 11-10-2018 dqs_2282 1ce97f8910a16906066001569c2a56bd 661 ProSitePatterns PS00455 Putative AMP-binding domain signature. 275 286 - T 11-10-2018 IPR020845 AMP-binding, conserved site dqs_2282 1ce97f8910a16906066001569c2a56bd 661 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 43 98 6.1E-10 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 dqs_2282 1ce97f8910a16906066001569c2a56bd 661 Gene3D G3DSA:3.40.50.12780 79 527 1.9E-57 T 11-10-2018 dqs_2282 1ce97f8910a16906066001569c2a56bd 661 SUPERFAMILY SSF56801 42 635 8.63E-126 T 11-10-2018 dqs_2282 1ce97f8910a16906066001569c2a56bd 661 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 10 659 2.3E-294 T 11-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 dqs_2282 1ce97f8910a16906066001569c2a56bd 661 Pfam PF00501 AMP-binding enzyme 105 531 2.1E-49 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 dqs_1868 307081cb15ec3842c96097c2ab1c3908 186 Pfam PF11387 Protein of unknown function (DUF2795) 135 178 4.5E-16 T 11-10-2018 IPR021527 Protein of unknown function DUF2795 dqs_3360 1ebfdde568d105eee67c2cf3d83b4340 198 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 185 1.3E-50 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 dqs_3360 1ebfdde568d105eee67c2cf3d83b4340 198 SMART SM01207 9 186 2.8E-82 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 dqs_3360 1ebfdde568d105eee67c2cf3d83b4340 198 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 6 194 19.81 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 dqs_3360 1ebfdde568d105eee67c2cf3d83b4340 198 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 6 195 1.6E-57 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 dqs_0973 753279dce48a2645871b5ea3add63efc 105 PIRSF PIRSF019302 1 105 3.6E-43 T 11-10-2018 IPR016755 Uncharacterised conserved protein UCP019302 dqs_0973 753279dce48a2645871b5ea3add63efc 105 Pfam PF10084 Uncharacterized protein conserved in bacteria (DUF2322) 3 100 5.0E-41 T 11-10-2018 IPR016755 Uncharacterised conserved protein UCP019302 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 SUPERFAMILY SSF56235 31 573 2.89E-154 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 Gene3D G3DSA:1.10.246.130 273 388 3.2E-33 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 42 565 4.0E-112 T 11-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 Gene3D G3DSA:3.60.20.40 389 573 2.6E-52 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 415 433 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 451 466 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 63 88 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 476 493 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 138 156 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 256 272 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 393 411 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 156 175 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 286 305 1.7E-67 T 11-10-2018 dqs_1598 6ea06e51f989a3454110565e0cc99cb9 573 Pfam PF01019 Gamma-glutamyltranspeptidase 56 568 1.6E-143 T 11-10-2018 dqs_2827 ed224fcdbed4efd1a3331b2e8cc87e0b 604 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 441 599 1.2E-40 T 11-10-2018 IPR000160 GGDEF domain dqs_2827 ed224fcdbed4efd1a3331b2e8cc87e0b 604 Gene3D G3DSA:3.30.70.270 426 600 1.1E-48 T 11-10-2018 dqs_2827 ed224fcdbed4efd1a3331b2e8cc87e0b 604 Pfam PF00990 Diguanylate cyclase, GGDEF domain 441 596 1.4E-39 T 11-10-2018 IPR000160 GGDEF domain dqs_2827 ed224fcdbed4efd1a3331b2e8cc87e0b 604 SUPERFAMILY SSF55073 445 599 1.41E-43 T 11-10-2018 IPR029787 Nucleotide cyclase dqs_2827 ed224fcdbed4efd1a3331b2e8cc87e0b 604 SMART SM00267 429 600 1.3E-53 T 11-10-2018 IPR000160 GGDEF domain dqs_3637 7f5853e24993e4797140e177983fb2fd 136 PIRSF PIRSF004638 1 136 6.6E-49 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 dqs_3637 7f5853e24993e4797140e177983fb2fd 136 Pfam PF03653 Uncharacterised protein family (UPF0093) 4 136 3.3E-44 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 dqs_0222 5f9cbfbfa2c466e1eafbf5c2fd61fc24 67 SUPERFAMILY SSF88723 12 63 7.57E-7 T 11-10-2018 IPR029060 PIN-like domain superfamily dqs_1982 78c7d70fe5a740578687ac45d99f27fc 208 Pfam PF13628 Domain of unknown function (DUF4142) 49 184 1.5E-41 T 11-10-2018 IPR025419 Domain of unknown function DUF4142 dqs_1982 78c7d70fe5a740578687ac45d99f27fc 208 Gene3D G3DSA:1.20.1260.10 39 187 1.1E-8 T 11-10-2018 IPR012347 Ferritin-like dqs_0492 117e96480a3e7c440f15768240f5b317 117 SUPERFAMILY SSF55298 11 116 9.58E-26 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 dqs_0492 117e96480a3e7c440f15768240f5b317 117 Pfam PF01042 Endoribonuclease L-PSP 10 115 1.0E-19 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 dqs_0492 117e96480a3e7c440f15768240f5b317 117 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 91 110 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 dqs_0492 117e96480a3e7c440f15768240f5b317 117 Gene3D G3DSA:3.30.1330.40 1 117 1.5E-32 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 dqs_0106 aaa8b08fcf70dcf930ca4a0fd008940f 155 Hamap MF_00598 Protein Smg [smg]. 1 155 26.627 T 11-10-2018 IPR007456 Smg dqs_0106 aaa8b08fcf70dcf930ca4a0fd008940f 155 Pfam PF04361 Protein of unknown function (DUF494) 1 149 7.4E-53 T 11-10-2018 IPR007456 Smg dqs_2405 9b5de2ac9ba4c616948b9188fdeff47c 301 Pfam PF07859 alpha/beta hydrolase fold 71 276 4.4E-70 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 dqs_2405 9b5de2ac9ba4c616948b9188fdeff47c 301 SUPERFAMILY SSF53474 32 299 1.01E-68 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2405 9b5de2ac9ba4c616948b9188fdeff47c 301 Gene3D G3DSA:3.40.50.1820 2 301 2.2E-90 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1450 c2f91079cbcd264606d737e6b7a19283 362 SUPERFAMILY SSF161098 149 345 8.24E-34 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1450 c2f91079cbcd264606d737e6b7a19283 362 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 149 247 1.4E-15 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 dqs_1450 c2f91079cbcd264606d737e6b7a19283 362 Gene3D G3DSA:1.10.3720.10 141 357 7.1E-42 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1450 c2f91079cbcd264606d737e6b7a19283 362 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 169 355 6.2E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_1979 75299c243dc9abe1e230e8f7e010dbff 677 Gene3D G3DSA:2.170.130.10 1 119 6.1E-24 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_1979 75299c243dc9abe1e230e8f7e010dbff 677 SUPERFAMILY SSF56935 17 638 5.13E-84 T 11-10-2018 dqs_1979 75299c243dc9abe1e230e8f7e010dbff 677 Pfam PF07715 TonB-dependent Receptor Plug Domain 20 115 1.0E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_1979 75299c243dc9abe1e230e8f7e010dbff 677 Gene3D G3DSA:2.40.170.20 128 654 2.8E-54 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_1979 75299c243dc9abe1e230e8f7e010dbff 677 Pfam PF00593 TonB dependent receptor 244 641 3.1E-43 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_0540 1455b42ed348041a22e9b1e740ace040 312 TIGRFAM TIGR02662 dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase 14 299 2.3E-106 T 11-10-2018 IPR013479 ADP-ribosyl-dinitrogen reductase hydrolase dqs_0540 1455b42ed348041a22e9b1e740ace040 312 SUPERFAMILY SSF101478 12 297 1.57E-60 T 11-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily dqs_0540 1455b42ed348041a22e9b1e740ace040 312 Gene3D G3DSA:1.10.4080.10 9 304 2.3E-82 T 11-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily dqs_0540 1455b42ed348041a22e9b1e740ace040 312 Pfam PF03747 ADP-ribosylglycohydrolase 18 274 8.7E-48 T 11-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 dqs_0750 1c0c70b455d6fe1baf9a1cce1a35c860 106 Pfam PF04341 Protein of unknown function, DUF485 11 98 1.4E-32 T 11-10-2018 IPR007436 Protein of unknown function DUF485 dqs_3365 6ba725de83fc6101562eca0097a6608e 122 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 1 121 6.2E-62 T 11-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 dqs_3365 6ba725de83fc6101562eca0097a6608e 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 117 2.8E-23 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_3365 6ba725de83fc6101562eca0097a6608e 122 Gene3D G3DSA:3.10.180.10 1 122 7.0E-48 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3365 6ba725de83fc6101562eca0097a6608e 122 ProSitePatterns PS00935 Glyoxalase I signature 2. 63 75 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 dqs_3365 6ba725de83fc6101562eca0097a6608e 122 SUPERFAMILY SSF54593 1 120 1.48E-34 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_4063 657a943e9ec339512f8c89bd34fc2475 283 Pfam PF06629 MltA-interacting protein MipA 39 271 1.9E-34 T 11-10-2018 IPR010583 MltA-interacting MipA dqs_1428 bf20584dc4e2a95cc043acc621f6e14a 612 PIRSF PIRSF028304 1 611 5.1E-200 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like dqs_1428 bf20584dc4e2a95cc043acc621f6e14a 612 Pfam PF05947 Type VI secretion system, TssF 6 609 3.5E-212 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like dqs_1428 bf20584dc4e2a95cc043acc621f6e14a 612 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 611 2.5E-210 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like dqs_3535 cd4116db4be974e9f2d633c40686792f 72 SUPERFAMILY SSF50249 1 70 5.57E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold dqs_3535 cd4116db4be974e9f2d633c40686792f 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 6.9E-27 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 dqs_3535 cd4116db4be974e9f2d633c40686792f 72 Gene3D G3DSA:2.40.50.140 1 72 1.2E-37 T 11-10-2018 dqs_3535 cd4116db4be974e9f2d633c40686792f 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 1.0E-37 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 dqs_3535 cd4116db4be974e9f2d633c40686792f 72 SMART SM00316 4 72 2.2E-6 T 11-10-2018 IPR022967 RNA-binding domain, S1 dqs_3535 cd4116db4be974e9f2d633c40686792f 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.656 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 dqs_2588 7343433b62960743051fd3431c3e5b5b 87 PIRSF PIRSF000039 2 85 1.6E-22 T 11-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 dqs_2588 7343433b62960743051fd3431c3e5b5b 87 ProDom PD468738 PHENOL HYDROXYLASE COMPONENT SUBUNIT PHENOLHYDROXYLASE MONOOXYGENASE TOMA0 P0 HYDROCARBONS IRON 6 52 4.0E-11 T 11-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 dqs_2588 7343433b62960743051fd3431c3e5b5b 87 Pfam PF06099 Phenol hydroxylase subunit 5 61 4.3E-28 T 11-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 dqs_2193 36e5cf8a7ddcac4f051dc14e82d859a4 116 Pfam PF03960 ArsC family 7 113 3.9E-12 T 11-10-2018 IPR006660 Arsenate reductase-like dqs_2193 36e5cf8a7ddcac4f051dc14e82d859a4 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 114 6.2E-39 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 dqs_2193 36e5cf8a7ddcac4f051dc14e82d859a4 116 SUPERFAMILY SSF52833 4 115 1.49E-29 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2193 36e5cf8a7ddcac4f051dc14e82d859a4 116 Gene3D G3DSA:3.40.30.10 1 116 4.4E-43 T 11-10-2018 dqs_1987 998953b0ad34123e953a0fef22e41b80 450 Pfam PF07044 Protein of unknown function (DUF1329) 85 444 1.2E-130 T 11-10-2018 IPR010752 Protein of unknown function DUF1329 dqs_4056 aeefd80d83051cb210912b33f0cf84d2 275 SUPERFAMILY SSF53901 17 177 4.89E-9 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_4056 aeefd80d83051cb210912b33f0cf84d2 275 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 48 202 6.2E-27 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal dqs_0225 182fda3731ac49c87e0ff9167dd07c78 109 Gene3D G3DSA:3.10.20.440 10 104 1.6E-11 T 11-10-2018 dqs_0225 182fda3731ac49c87e0ff9167dd07c78 109 SUPERFAMILY SSF54292 23 105 1.57E-19 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_0225 182fda3731ac49c87e0ff9167dd07c78 109 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 21 99 1.0E-24 T 11-10-2018 dqs_1978 7ec6f33a93ef03c6c5c4c9fb77f898e9 258 Pfam PF03929 PepSY-associated TM region 9 233 5.2E-8 T 11-10-2018 IPR005625 PepSY-associated TM protein dqs_2837 d61691e9c9984090c277db02a8618e68 1183 Pfam PF13641 Glycosyltransferase like family 2 579 821 5.6E-14 T 11-10-2018 dqs_2837 d61691e9c9984090c277db02a8618e68 1183 SUPERFAMILY SSF53448 350 530 4.69E-10 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2837 d61691e9c9984090c277db02a8618e68 1183 Gene3D G3DSA:3.90.550.10 400 558 1.4E-13 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2837 d61691e9c9984090c277db02a8618e68 1183 SUPERFAMILY SSF53756 876 1180 2.26E-10 T 11-10-2018 dqs_2837 d61691e9c9984090c277db02a8618e68 1183 SUPERFAMILY SSF53448 581 806 2.53E-31 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2837 d61691e9c9984090c277db02a8618e68 1183 Gene3D G3DSA:3.40.50.2000 1005 1156 1.1E-10 T 11-10-2018 dqs_2837 d61691e9c9984090c277db02a8618e68 1183 Gene3D G3DSA:3.90.550.10 571 813 1.8E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0054 0491cb08487440829d51a54261063617 366 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 6 310 9.0E-70 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B dqs_0054 0491cb08487440829d51a54261063617 366 SUPERFAMILY SSF50891 185 298 1.52E-13 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily dqs_0054 0491cb08487440829d51a54261063617 366 Gene3D G3DSA:2.40.100.10 182 318 6.2E-47 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily dqs_0054 0491cb08487440829d51a54261063617 366 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 28 292 1.3E-69 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B dqs_0054 0491cb08487440829d51a54261063617 366 SMART SM00797 27 309 6.4E-79 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B dqs_1422 58de6c93a023b10bf169a686600ae463 1230 Pfam PF06761 Intracellular multiplication and human macrophage-killing 476 849 7.8E-85 T 11-10-2018 IPR009612 ImcF-related dqs_1422 58de6c93a023b10bf169a686600ae463 1230 Pfam PF14331 ImcF-related N-terminal domain 180 431 3.3E-55 T 11-10-2018 IPR025743 ImcF-related, N-terminal domain dqs_1422 58de6c93a023b10bf169a686600ae463 1230 Pfam PF06744 Type VI secretion protein IcmF C-terminal 984 1177 1.1E-41 T 11-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal dqs_3236 2ed2586ad6a891b39df9508303cee543 72 Pfam PF12088 Protein of unknown function (DUF3565) 6 62 2.5E-34 T 11-10-2018 IPR021948 Protein of unknown function DUF3565 dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 SMART SM00642 210 561 1.5E-4 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 Gene3D G3DSA:2.60.40.1180 572 677 9.8E-30 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 Gene3D G3DSA:1.20.58.280 107 186 1.6E-48 T 11-10-2018 dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 Gene3D G3DSA:3.20.20.80 205 570 1.2E-153 T 11-10-2018 dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 SUPERFAMILY SSF51445 194 567 7.4E-76 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 Pfam PF11896 Domain of unknown function (DUF3416) 14 204 6.1E-51 T 11-10-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 Pfam PF00128 Alpha amylase, catalytic domain 232 337 1.5E-4 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 Gene3D G3DSA:2.60.40.10 14 197 1.6E-48 T 11-10-2018 IPR013783 Immunoglobulin-like fold dqs_1876 0f181c8b63a93be1ac7c9252499ce79b 682 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 11 670 46.076 T 11-10-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 dqs_2383 a20f6d83bd0144d21757bffa0284664f 326 Gene3D G3DSA:2.130.10.10 42 295 2.8E-25 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_2383 a20f6d83bd0144d21757bffa0284664f 326 Pfam PF14870 Photosynthesis system II assembly factor YCF48 75 124 1.2E-7 T 11-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain dqs_2383 a20f6d83bd0144d21757bffa0284664f 326 Pfam PF14870 Photosynthesis system II assembly factor YCF48 125 275 8.3E-13 T 11-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain dqs_2383 a20f6d83bd0144d21757bffa0284664f 326 SUPERFAMILY SSF110296 55 276 1.29E-44 T 11-10-2018 dqs_2335 f55408c6e4b4aca58247b38621f53a0f 214 SUPERFAMILY SSF53098 36 190 2.45E-23 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_2335 f55408c6e4b4aca58247b38621f53a0f 214 SMART SM00479 44 191 0.001 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III dqs_2335 f55408c6e4b4aca58247b38621f53a0f 214 Gene3D G3DSA:3.30.420.10 83 193 2.2E-13 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_3498 1b7628c9ed702e5eec1f84945f08d5cc 385 SUPERFAMILY SSF53383 11 384 1.48E-99 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase dqs_3498 1b7628c9ed702e5eec1f84945f08d5cc 385 Gene3D G3DSA:3.40.640.10 45 283 4.2E-132 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 dqs_3498 1b7628c9ed702e5eec1f84945f08d5cc 385 Gene3D G3DSA:3.90.1150.10 21 382 4.2E-132 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 dqs_3498 1b7628c9ed702e5eec1f84945f08d5cc 385 Pfam PF00155 Aminotransferase class I and II 33 382 1.1E-57 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 dqs_0522 7254f010e27f87d7892af5122410308b 244 PIRSF PIRSF006102 21 237 3.7E-79 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 dqs_0522 7254f010e27f87d7892af5122410308b 244 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 23 229 27.375 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 dqs_0522 7254f010e27f87d7892af5122410308b 244 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 26 227 4.3E-83 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 dqs_0522 7254f010e27f87d7892af5122410308b 244 Pfam PF02508 Rnf-Nqr subunit, membrane protein 24 219 3.4E-65 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 dqs_0020 87da66ac2835ca2eddf1a1e2873e83a5 512 Pfam PF04411 PD-(D/E)XK nuclease superfamily 337 439 2.4E-7 T 11-10-2018 IPR007505 PD-(D/E)XK nuclease superfamily 7 dqs_0020 87da66ac2835ca2eddf1a1e2873e83a5 512 Pfam PF09823 Domain of unknown function (DUF2357) 97 310 9.6E-14 T 11-10-2018 IPR018633 Domain of unknown function DUF2357 dqs_1885 2d9a0a10bff7e454e659562cfffab2dc 113 Gene3D G3DSA:1.20.1270.360 3 113 3.7E-30 T 11-10-2018 dqs_3838 fe939880e2cc5a79ac51d89cd65745ae 388 Gene3D G3DSA:1.20.1250.20 5 384 4.7E-20 T 11-10-2018 dqs_3838 fe939880e2cc5a79ac51d89cd65745ae 388 Pfam PF07690 Major Facilitator Superfamily 12 334 6.9E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_3838 fe939880e2cc5a79ac51d89cd65745ae 388 SUPERFAMILY SSF103473 5 386 2.09E-26 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2509 42da6c38afbb82782d6a956212fcccff 184 Pfam PF04205 FMN-binding domain 96 174 4.7E-11 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 dqs_2509 42da6c38afbb82782d6a956212fcccff 184 SMART SM00900 96 177 2.7E-14 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 dqs_1385 7c5f76233ecdfa712b1e6411fb8297f8 548 Pfam PF03961 Flagellar Assembly Protein A 86 528 2.2E-120 T 11-10-2018 IPR005646 Flagellar assembly protein A dqs_0119 4b952e8f0def467d9423d52f647edb7d 151 Gene3D G3DSA:3.50.80.10 1 145 6.8E-55 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily dqs_0119 4b952e8f0def467d9423d52f647edb7d 151 SUPERFAMILY SSF69500 1 143 3.66E-53 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily dqs_0119 4b952e8f0def467d9423d52f647edb7d 151 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 142 5.6E-53 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 dqs_0119 4b952e8f0def467d9423d52f647edb7d 151 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 143 4.7E-53 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 dqs_0119 4b952e8f0def467d9423d52f647edb7d 151 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 33.273 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 dqs_3223 1b2a48fdfb6e638f2a55be759b167304 141 SUPERFAMILY SSF46626 45 137 5.68E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3223 1b2a48fdfb6e638f2a55be759b167304 141 Pfam PF00034 Cytochrome c 51 125 8.3E-12 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3223 1b2a48fdfb6e638f2a55be759b167304 141 Gene3D G3DSA:1.10.760.10 1 141 3.4E-41 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_3835 d06875058e9c1630eec1ac68cd00f808 135 Pfam PF05232 Chlorhexidine efflux transporter 3 58 6.6E-16 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter dqs_3835 d06875058e9c1630eec1ac68cd00f808 135 Pfam PF05232 Chlorhexidine efflux transporter 67 129 4.3E-22 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter dqs_3104 b1fb3bbde2a7a79ac4222c28c992c3af 285 SMART SM01049 23 108 5.5E-9 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_3104 b1fb3bbde2a7a79ac4222c28c992c3af 285 SMART SM01049 157 237 0.7 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_3104 b1fb3bbde2a7a79ac4222c28c992c3af 285 Gene3D G3DSA:3.30.450.20 29 161 3.2E-19 T 11-10-2018 dqs_3104 b1fb3bbde2a7a79ac4222c28c992c3af 285 Gene3D G3DSA:3.30.450.20 162 285 1.1E-15 T 11-10-2018 dqs_3104 b1fb3bbde2a7a79ac4222c28c992c3af 285 Pfam PF17200 Single Cache domain 2 191 284 3.2E-13 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_3104 b1fb3bbde2a7a79ac4222c28c992c3af 285 Pfam PF17200 Single Cache domain 2 26 147 2.2E-15 T 11-10-2018 IPR033480 Single Cache domain 2 dqs_1140 c55924b9c20d46e1261bb2ca2056610c 149 SUPERFAMILY SSF54631 13 142 2.65E-26 T 11-10-2018 dqs_1140 c55924b9c20d46e1261bb2ca2056610c 149 Gene3D G3DSA:3.10.580.10 1 141 1.3E-30 T 11-10-2018 dqs_1140 c55924b9c20d46e1261bb2ca2056610c 149 Pfam PF00571 CBS domain 15 60 4.3E-5 T 11-10-2018 IPR000644 CBS domain dqs_1140 c55924b9c20d46e1261bb2ca2056610c 149 Pfam PF00571 CBS domain 74 125 3.3E-8 T 11-10-2018 IPR000644 CBS domain dqs_1140 c55924b9c20d46e1261bb2ca2056610c 149 SMART SM00116 13 60 0.0031 T 11-10-2018 IPR000644 CBS domain dqs_1140 c55924b9c20d46e1261bb2ca2056610c 149 SMART SM00116 78 125 0.0084 T 11-10-2018 IPR000644 CBS domain dqs_1329 886ea2f81c193865cad9751c2e4a28fe 176 Pfam PF06496 Protein of unknown function (DUF1097) 9 165 2.8E-35 T 11-10-2018 IPR009476 Protein of unknown function DUF1097 dqs_3349 63ef14a6eb71a26b077418331d354797 259 SUPERFAMILY SSF52540 1 256 5.0E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3349 63ef14a6eb71a26b077418331d354797 259 Pfam PF13614 AAA domain 5 182 5.6E-40 T 11-10-2018 IPR025669 AAA domain dqs_3349 63ef14a6eb71a26b077418331d354797 259 Gene3D G3DSA:3.40.50.300 3 258 2.6E-65 T 11-10-2018 dqs_3084 5e9d83e6642547660bcbc6175b8467e1 152 Pfam PF04214 Protein of unknown function, DUF 58 126 7.2E-31 T 11-10-2018 IPR007332 Protein of unknown function DUF411 dqs_3056 7f488f9e300c9b770c684445b7ab3ed3 189 Pfam PF13681 Type IV pilus assembly protein PilX C-term 100 187 1.1E-14 T 11-10-2018 IPR025205 PilX/PilW C-terminal domain dqs_3056 7f488f9e300c9b770c684445b7ab3ed3 189 Pfam PF14341 PilX N-terminal 11 61 5.2E-17 T 11-10-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 Gene3D G3DSA:1.10.287.950 207 536 2.3E-70 T 11-10-2018 dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 SMART SM00304 207 260 2.4E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 SMART SM00283 275 535 2.2E-65 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 Pfam PF00672 HAMP domain 207 256 8.5E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 Pfam PF12729 Four helix bundle sensory module for signal transduction 2 179 5.0E-29 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 SUPERFAMILY SSF58104 228 535 1.7E-69 T 11-10-2018 dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 373 400 5.2E-25 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 22 5.2E-25 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 402 431 5.2E-25 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0139 2a63b51ce6dd6f38b7217de6fbf4ab7f 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 504 2.2E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_2648 b6bb4185c956c6ff390fc68cf200638f 139 Gene3D G3DSA:3.10.129.10 1 139 5.7E-37 T 11-10-2018 dqs_2648 b6bb4185c956c6ff390fc68cf200638f 139 SUPERFAMILY SSF54637 4 139 2.87E-32 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_2648 b6bb4185c956c6ff390fc68cf200638f 139 Pfam PF13279 Thioesterase-like superfamily 13 137 6.2E-8 T 11-10-2018 dqs_2777 abb20404596b36621380ef14701e7981 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 122 3.7E-7 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_2777 abb20404596b36621380ef14701e7981 141 SUPERFAMILY SSF54593 5 127 1.34E-22 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2777 abb20404596b36621380ef14701e7981 141 Gene3D G3DSA:3.10.180.10 3 128 2.5E-20 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_4010 c61557b2701ae8af89fabaf383cf9df1 295 Pfam PF13557 Putative MetA-pathway of phenol degradation 70 282 1.2E-23 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative dqs_1227 bf43c66b6f3d2e3daa116e0e42bef6f6 204 Pfam PF03458 UPF0126 domain 90 163 3.7E-21 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 dqs_1227 bf43c66b6f3d2e3daa116e0e42bef6f6 204 Pfam PF03458 UPF0126 domain 6 78 3.8E-18 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 dqs_0707 815298b7a71c3c52a9d35ff5e375a5ef 465 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 114 125 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_0707 815298b7a71c3c52a9d35ff5e375a5ef 465 Pfam PF13183 4Fe-4S dicluster domain 52 128 1.3E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_0707 815298b7a71c3c52a9d35ff5e375a5ef 465 SUPERFAMILY SSF46548 51 130 1.83E-6 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 dqs_0036 7e74eb3f867ba78f8fdd060f69561048 312 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 301 7.1E-51 T 11-10-2018 IPR016040 NAD(P)-binding domain dqs_0036 7e74eb3f867ba78f8fdd060f69561048 312 SUPERFAMILY SSF51735 1 308 2.72E-90 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0036 7e74eb3f867ba78f8fdd060f69561048 312 Gene3D G3DSA:3.40.50.720 2 292 5.0E-104 T 11-10-2018 dqs_0036 7e74eb3f867ba78f8fdd060f69561048 312 Gene3D G3DSA:3.90.25.10 182 304 5.0E-104 T 11-10-2018 dqs_2105 a3bff3e36b28e26d51cfd5fb3489e5ec 350 Gene3D G3DSA:2.130.10.10 199 347 6.0E-7 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_2105 a3bff3e36b28e26d51cfd5fb3489e5ec 350 Pfam PF14870 Photosynthesis system II assembly factor YCF48 98 224 9.2E-9 T 11-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain dqs_2105 a3bff3e36b28e26d51cfd5fb3489e5ec 350 Gene3D G3DSA:2.130.10.10 109 198 2.9E-7 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_2105 a3bff3e36b28e26d51cfd5fb3489e5ec 350 SUPERFAMILY SSF110296 54 295 1.44E-31 T 11-10-2018 dqs_1365 67ed8e9ff636a294559296ee2e9a68a4 69 Pfam PF04102 SlyX 6 69 9.6E-21 T 11-10-2018 IPR007236 SlyX dqs_1365 67ed8e9ff636a294559296ee2e9a68a4 69 Gene3D G3DSA:1.20.5.110 6 56 3.4E-5 T 11-10-2018 dqs_1036 0f2c3103ce3233771339dbf18cb70885 251 Pfam PF02167 Cytochrome C1 family 40 249 8.3E-20 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 dqs_1036 0f2c3103ce3233771339dbf18cb70885 251 SUPERFAMILY SSF46626 23 215 3.19E-48 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1036 0f2c3103ce3233771339dbf18cb70885 251 Gene3D G3DSA:1.10.760.10 31 216 3.5E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1426 69473de533a29715cd9c1ff0bbe4ff24 158 Pfam PF00691 OmpA family 73 143 1.4E-7 T 11-10-2018 IPR006665 OmpA-like domain dqs_1426 69473de533a29715cd9c1ff0bbe4ff24 158 SUPERFAMILY SSF103088 64 143 6.67E-6 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_1426 69473de533a29715cd9c1ff0bbe4ff24 158 Gene3D G3DSA:3.30.1330.60 44 151 8.1E-6 T 11-10-2018 IPR036737 OmpA-like domain superfamily dqs_2209 e3b68c5efada7b8c7082991f02601ba8 487 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 119 133 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 dqs_2209 e3b68c5efada7b8c7082991f02601ba8 487 SUPERFAMILY SSF53686 2 485 1.71E-151 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme dqs_2209 e3b68c5efada7b8c7082991f02601ba8 487 TIGRFAM TIGR00260 thrC: threonine synthase 116 449 1.1E-68 T 11-10-2018 IPR004450 Threonine synthase-like dqs_2209 e3b68c5efada7b8c7082991f02601ba8 487 Gene3D G3DSA:3.90.1380.10 1 97 6.0E-34 T 11-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily dqs_2209 e3b68c5efada7b8c7082991f02601ba8 487 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 100 347 1.1E-12 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme dqs_2209 e3b68c5efada7b8c7082991f02601ba8 487 Gene3D G3DSA:3.40.50.1100 125 468 7.6E-137 T 11-10-2018 dqs_2209 e3b68c5efada7b8c7082991f02601ba8 487 Gene3D G3DSA:3.40.50.1100 117 455 7.6E-137 T 11-10-2018 dqs_2209 e3b68c5efada7b8c7082991f02601ba8 487 Pfam PF14821 Threonine synthase N terminus 2 82 3.3E-29 T 11-10-2018 IPR029144 Threonine synthase, N-terminal dqs_0537 05e9d19af1b2755585e2dc66c6e83a6e 95 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 85 6.4E-16 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 dqs_0537 05e9d19af1b2755585e2dc66c6e83a6e 95 Gene3D G3DSA:3.10.20.30 1 94 3.4E-19 T 11-10-2018 IPR012675 Beta-grasp domain superfamily dqs_0537 05e9d19af1b2755585e2dc66c6e83a6e 95 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 dqs_0537 05e9d19af1b2755585e2dc66c6e83a6e 95 SUPERFAMILY SSF54292 4 91 2.75E-20 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 dqs_3472 27dd6465d029bd06c5eaba8208e22a67 184 Pfam PF11136 Protein of unknown function (DUF2889) 14 137 1.9E-38 T 11-10-2018 IPR021312 Protein of unknown function DUF2889 dqs_3212 0770324e78292067e20db83e89b2863c 97 Gene3D G3DSA:3.30.2310.20 1 93 2.5E-8 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily dqs_3212 0770324e78292067e20db83e89b2863c 97 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 93 3.5E-11 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family dqs_2638 5002cf7a0b1133b3bbbe09d8b1b76ec4 85 Pfam PF13619 KTSC domain 10 64 5.3E-14 T 11-10-2018 IPR025309 KTSC domain dqs_1996 9cdb1fce9d1e968a615c0785de8602cd 330 SUPERFAMILY SSF47240 1 328 2.03E-110 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_1996 9cdb1fce9d1e968a615c0785de8602cd 330 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 51 273 2.8E-69 T 11-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 dqs_1996 9cdb1fce9d1e968a615c0785de8602cd 330 Gene3D G3DSA:1.10.620.20 1 329 3.6E-112 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 dqs_1996 9cdb1fce9d1e968a615c0785de8602cd 330 PIRSF PIRSF000040 1 330 7.6E-103 T 11-10-2018 IPR012078 Methane/phenol monooxygenase, hydroxylase component GO:0016709|GO:0055114 dqs_0524 4f26b25ee92cafc929714063eacd744d 351 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 1 339 26.007 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 dqs_0524 4f26b25ee92cafc929714063eacd744d 351 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 6 338 4.1E-109 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 dqs_0524 4f26b25ee92cafc929714063eacd744d 351 Pfam PF03116 NQR2, RnfD, RnfE family 5 337 1.2E-107 T 11-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 dqs_2851 335a6f08a2d5e194b260f93c98178473 562 Pfam PF01514 Secretory protein of YscJ/FliF family 42 231 1.1E-74 T 11-10-2018 IPR006182 Secretory protein YscJ/FliF dqs_2851 335a6f08a2d5e194b260f93c98178473 562 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 22 554 1.7E-129 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 dqs_2851 335a6f08a2d5e194b260f93c98178473 562 PRINTS PR01009 Flagellar M-ring protein signature 207 225 6.3E-39 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 dqs_2851 335a6f08a2d5e194b260f93c98178473 562 PRINTS PR01009 Flagellar M-ring protein signature 132 150 6.3E-39 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 dqs_2851 335a6f08a2d5e194b260f93c98178473 562 PRINTS PR01009 Flagellar M-ring protein signature 164 178 6.3E-39 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 dqs_2851 335a6f08a2d5e194b260f93c98178473 562 PRINTS PR01009 Flagellar M-ring protein signature 278 296 6.3E-39 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 dqs_2851 335a6f08a2d5e194b260f93c98178473 562 PRINTS PR01009 Flagellar M-ring protein signature 363 387 6.3E-39 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 dqs_2851 335a6f08a2d5e194b260f93c98178473 562 PIRSF PIRSF004862 13 558 1.2E-153 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 dqs_2851 335a6f08a2d5e194b260f93c98178473 562 Pfam PF08345 Flagellar M-ring protein C-terminal 265 439 9.0E-52 T 11-10-2018 IPR013556 Flagellar M-ring C-terminal dqs_2851 335a6f08a2d5e194b260f93c98178473 562 Gene3D G3DSA:3.30.300.30 132 233 5.5E-11 T 11-10-2018 dqs_1960 09de9148b0a1e98027a679e0097b3393 178 Gene3D G3DSA:3.30.240.20 92 164 4.4E-20 T 11-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily dqs_1960 09de9148b0a1e98027a679e0097b3393 178 Pfam PF04239 Protein of unknown function (DUF421) 106 164 3.3E-15 T 11-10-2018 IPR007353 Protein of unknown function DUF421 dqs_4098 53616507ad442bac49485c22a44ebf5b 255 SUPERFAMILY SSF52540 50 163 1.59E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4098 53616507ad442bac49485c22a44ebf5b 255 PIRSF PIRSF037290 5 232 2.5E-66 T 11-10-2018 IPR017166 Uncharacterised conserved protein UCP037290 dqs_4098 53616507ad442bac49485c22a44ebf5b 255 Gene3D G3DSA:3.40.50.300 50 162 3.7E-35 T 11-10-2018 dqs_0886 8c446f86f73601e77cc44425a1f5c8ad 135 PIRSF PIRSF006092 19 127 7.3E-23 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 dqs_0886 8c446f86f73601e77cc44425a1f5c8ad 135 SUPERFAMILY SSF54534 48 125 1.96E-15 T 11-10-2018 dqs_0886 8c446f86f73601e77cc44425a1f5c8ad 135 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 49 123 4.8E-17 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 dqs_0886 8c446f86f73601e77cc44425a1f5c8ad 135 Pfam PF14760 Rnk N-terminus 3 42 1.3E-12 T 11-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain dqs_0886 8c446f86f73601e77cc44425a1f5c8ad 135 Gene3D G3DSA:3.10.50.30 44 134 1.1E-27 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 dqs_0886 8c446f86f73601e77cc44425a1f5c8ad 135 Gene3D G3DSA:1.10.286.20 1 43 9.6E-10 T 11-10-2018 dqs_0144 ae5fcddc144dbfaf20ffc7066df43e84 133 SUPERFAMILY SSF52172 4 128 1.02E-21 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0144 ae5fcddc144dbfaf20ffc7066df43e84 133 SMART SM00448 4 124 6.0E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0144 ae5fcddc144dbfaf20ffc7066df43e84 133 Pfam PF00072 Response regulator receiver domain 6 124 1.6E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_0144 ae5fcddc144dbfaf20ffc7066df43e84 133 Gene3D G3DSA:3.40.50.2300 2 133 2.3E-22 T 11-10-2018 dqs_3901 d9f27c01a6f818349fa195f776187264 192 SUPERFAMILY SSF52499 6 184 1.03E-37 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 dqs_3901 d9f27c01a6f818349fa195f776187264 192 Pfam PF00857 Isochorismatase family 8 144 3.9E-25 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 dqs_3901 d9f27c01a6f818349fa195f776187264 192 Gene3D G3DSA:3.40.50.850 1 187 1.3E-37 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 dqs_1676 2699c24f6b32085d9d9df2ae861171a3 78 SUPERFAMILY SSF109910 4 76 1.26E-17 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily dqs_1676 2699c24f6b32085d9d9df2ae861171a3 78 Pfam PF03937 Flavinator of succinate dehydrogenase 5 72 1.3E-17 T 11-10-2018 IPR005631 Flavinator of succinate dehydrogenase dqs_1676 2699c24f6b32085d9d9df2ae861171a3 78 Gene3D G3DSA:1.10.150.250 1 78 1.4E-22 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily dqs_0719 a93f9f818eb3db119f20128ee1179be7 408 Pfam PF00534 Glycosyl transferases group 1 201 376 1.2E-7 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_0719 a93f9f818eb3db119f20128ee1179be7 408 SUPERFAMILY SSF53756 16 402 2.0E-32 T 11-10-2018 dqs_0719 a93f9f818eb3db119f20128ee1179be7 408 Gene3D G3DSA:3.40.50.2000 72 179 3.6E-5 T 11-10-2018 dqs_0719 a93f9f818eb3db119f20128ee1179be7 408 Gene3D G3DSA:3.40.50.2000 180 242 3.6E-5 T 11-10-2018 dqs_0719 a93f9f818eb3db119f20128ee1179be7 408 Gene3D G3DSA:3.40.50.2000 283 384 9.6E-13 T 11-10-2018 dqs_0719 a93f9f818eb3db119f20128ee1179be7 408 Pfam PF12000 Gkycosyl transferase family 4 group 27 186 1.4E-26 T 11-10-2018 IPR022623 Domain of unknown function DUF3495 dqs_0719 a93f9f818eb3db119f20128ee1179be7 408 Gene3D G3DSA:3.40.50.2000 385 396 9.6E-13 T 11-10-2018 dqs_0984 9a54eda0e8be92084c97248714078050 573 SUPERFAMILY SSF51735 428 557 2.7E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_0984 9a54eda0e8be92084c97248714078050 573 Gene3D G3DSA:1.20.1530.20 5 393 2.3E-75 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily dqs_0984 9a54eda0e8be92084c97248714078050 573 Pfam PF02254 TrkA-N domain 429 541 1.2E-25 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 dqs_0984 9a54eda0e8be92084c97248714078050 573 Gene3D G3DSA:3.40.50.720 423 562 2.9E-33 T 11-10-2018 dqs_0984 9a54eda0e8be92084c97248714078050 573 Pfam PF00999 Sodium/hydrogen exchanger family 13 386 3.2E-70 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 dqs_3185 3047c174ea69cd319102c9e0796e5038 165 Gene3D G3DSA:1.20.120.520 1 163 3.7E-33 T 11-10-2018 dqs_3185 3047c174ea69cd319102c9e0796e5038 165 Pfam PF01814 Hemerythrin HHE cation binding domain 7 141 5.3E-20 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_2506 426e719e522ebcf653529f8dacb24ce1 368 Gene3D G3DSA:3.90.550.10 1 241 8.4E-49 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2506 426e719e522ebcf653529f8dacb24ce1 368 SUPERFAMILY SSF53448 1 244 1.21E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_2506 426e719e522ebcf653529f8dacb24ce1 368 Pfam PF00535 Glycosyl transferase family 2 5 173 1.5E-27 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_2506 426e719e522ebcf653529f8dacb24ce1 368 Pfam PF04138 GtrA-like protein 245 362 3.9E-23 T 11-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 dqs_1266 5714964a4b3ac539f06c9f9fbf2f6ea9 353 Gene3D G3DSA:3.20.20.70 2 349 5.4E-109 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_1266 5714964a4b3ac539f06c9f9fbf2f6ea9 353 SUPERFAMILY SSF51412 13 336 4.27E-57 T 11-10-2018 dqs_1266 5714964a4b3ac539f06c9f9fbf2f6ea9 353 Pfam PF03060 Nitronate monooxygenase 12 346 4.8E-74 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 dqs_3136 843c766376cd5bd566f37385282716f6 543 SUPERFAMILY SSF47090 195 273 3.77E-13 T 11-10-2018 IPR036365 PGBD-like superfamily dqs_3136 843c766376cd5bd566f37385282716f6 543 Pfam PF01471 Putative peptidoglycan binding domain 214 264 2.0E-7 T 11-10-2018 IPR002477 Peptidoglycan binding-like dqs_3136 843c766376cd5bd566f37385282716f6 543 Pfam PF03734 L,D-transpeptidase catalytic domain 293 464 6.0E-31 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 dqs_3136 843c766376cd5bd566f37385282716f6 543 SUPERFAMILY SSF141523 292 452 1.29E-15 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like dqs_1857 4fc564292ed9acc0fe8fc60019025343 137 Gene3D G3DSA:1.10.490.10 12 135 2.8E-40 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 dqs_1857 4fc564292ed9acc0fe8fc60019025343 137 Pfam PF01152 Bacterial-like globin 15 132 2.4E-35 T 11-10-2018 IPR001486 Truncated hemoglobin GO:0019825 dqs_1857 4fc564292ed9acc0fe8fc60019025343 137 SUPERFAMILY SSF46458 13 133 2.26E-33 T 11-10-2018 IPR009050 Globin-like superfamily dqs_0221 ffd59a47730c1356e547fe576cb78ba5 118 Gene3D G3DSA:2.60.120.10 5 116 1.8E-25 T 11-10-2018 IPR014710 RmlC-like jelly roll fold dqs_0221 ffd59a47730c1356e547fe576cb78ba5 118 Pfam PF05899 Protein of unknown function (DUF861) 42 112 6.2E-24 T 11-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 dqs_0221 ffd59a47730c1356e547fe576cb78ba5 118 SUPERFAMILY SSF51182 41 114 1.41E-15 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily dqs_3537 c816a6e8435d647cdabc271f6dc3239b 144 SUPERFAMILY SSF52080 4 142 2.22E-42 T 11-10-2018 IPR036227 Ribosomal L18e/L15P superfamily dqs_3537 c816a6e8435d647cdabc271f6dc3239b 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 141 3.7E-43 T 11-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 dqs_3537 c816a6e8435d647cdabc271f6dc3239b 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 11-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 dqs_3537 c816a6e8435d647cdabc271f6dc3239b 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 142 9.2E-27 T 11-10-2018 IPR021131 Ribosomal protein L18e/L15P dqs_3537 c816a6e8435d647cdabc271f6dc3239b 144 Gene3D G3DSA:3.100.10.10 67 143 3.2E-11 T 11-10-2018 dqs_3537 c816a6e8435d647cdabc271f6dc3239b 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 141 17.956 T 11-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 dqs_1023 c6dbe1c254a637ef97753990cecc5460 297 Pfam PF08376 Nitrate and nitrite sensing 48 227 7.3E-11 T 11-10-2018 IPR013587 Nitrate/nitrite sensing protein dqs_1843 e12f4a9c6699f11b504474a7515d5c32 312 Pfam PF02470 MlaD protein 45 113 1.7E-12 T 11-10-2018 IPR003399 Mce/MlaD dqs_1964 82c4c981beb58c0dbbf043cb7992b2a5 127 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 13 117 4.3E-8 T 11-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III dqs_0672 cb878c450a62e2b7ae0f316a285e3b3c 108 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 103 4.8E-23 T 11-10-2018 IPR008407 Branched-chain amino acid transport, AzlD dqs_2707 5444136bf44c91102caa88daf12c3f99 300 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 39 99 2.2E-6 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 dqs_2707 5444136bf44c91102caa88daf12c3f99 300 Gene3D G3DSA:1.10.3090.10 22 243 3.2E-14 T 11-10-2018 dqs_2707 5444136bf44c91102caa88daf12c3f99 300 SUPERFAMILY SSF81891 23 240 3.27E-25 T 11-10-2018 dqs_3816 93e581e4d7f9c9aea0ebb5e99899dc05 111 Pfam PF08895 Domain of unknown function (DUF1840) 1 109 3.6E-34 T 11-10-2018 IPR014991 Protein of unknown function DUF1840 dqs_3674 c08fb5ae1429dfa44129a761f52a8f1b 225 SUPERFAMILY SSF63965 10 217 2.22E-63 T 11-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 dqs_3674 c08fb5ae1429dfa44129a761f52a8f1b 225 Pfam PF02570 Precorrin-8X methylmutase 18 214 4.2E-70 T 11-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 dqs_3674 c08fb5ae1429dfa44129a761f52a8f1b 225 Gene3D G3DSA:3.40.50.10230 6 224 1.1E-75 T 11-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 dqs_1159 48522565ba8abbbb54b37e46f8e1df7a 213 SUPERFAMILY SSF110997 142 206 6.28E-18 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 dqs_1159 48522565ba8abbbb54b37e46f8e1df7a 213 Pfam PF05036 Sporulation related domain 142 207 3.3E-19 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 dqs_1159 48522565ba8abbbb54b37e46f8e1df7a 213 Gene3D G3DSA:3.30.70.1070 144 212 3.3E-15 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 dqs_1636 5b93fedc588f094ad6cc4dd9dc3c93a7 303 PRINTS PR00111 Alpha/beta hydrolase fold signature 247 261 4.9E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1636 5b93fedc588f094ad6cc4dd9dc3c93a7 303 PRINTS PR00111 Alpha/beta hydrolase fold signature 76 91 4.9E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1636 5b93fedc588f094ad6cc4dd9dc3c93a7 303 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 135 4.9E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1636 5b93fedc588f094ad6cc4dd9dc3c93a7 303 Pfam PF12697 Alpha/beta hydrolase family 53 294 5.9E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_1636 5b93fedc588f094ad6cc4dd9dc3c93a7 303 SUPERFAMILY SSF53474 36 301 8.32E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1636 5b93fedc588f094ad6cc4dd9dc3c93a7 303 Gene3D G3DSA:3.40.50.1820 26 302 1.3E-78 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2485 d09de5a79a5844309a6fc257127be270 123 Gene3D G3DSA:3.40.30.10 1 108 8.5E-40 T 11-10-2018 dqs_2485 d09de5a79a5844309a6fc257127be270 123 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 1 123 6.3E-46 T 11-10-2018 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 dqs_1030 ee3c007f76176f10a11e0987eb00486d 410 SUPERFAMILY SSF53335 136 396 4.69E-71 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1030 ee3c007f76176f10a11e0987eb00486d 410 PIRSF PIRSF003085 36 405 2.6E-108 T 11-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 dqs_1030 ee3c007f76176f10a11e0987eb00486d 410 Pfam PF02353 Mycolic acid cyclopropane synthetase 128 394 1.9E-84 T 11-10-2018 dqs_1030 ee3c007f76176f10a11e0987eb00486d 410 Gene3D G3DSA:3.40.50.150 136 402 1.7E-91 T 11-10-2018 dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 31 48 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 SUPERFAMILY SSF51430 4 261 1.31E-83 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 Gene3D G3DSA:3.20.20.100 2 268 1.3E-93 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 PRINTS PR00069 Aldo-keto reductase signature 151 180 8.6E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 PRINTS PR00069 Aldo-keto reductase signature 188 212 8.6E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 PRINTS PR00069 Aldo-keto reductase signature 27 51 8.6E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 PRINTS PR00069 Aldo-keto reductase signature 83 101 8.6E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 PRINTS PR00069 Aldo-keto reductase signature 116 133 8.6E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 116 133 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 Pfam PF00248 Aldo/keto reductase family 8 252 5.3E-50 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain dqs_3776 d7608b0ec3f2178b6e90cd442f862104 268 PIRSF PIRSF000097 2 267 3.3E-66 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 dqs_4018 766f4389dfbb24d0da57176c5faffb4a 204 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 39 155 2.0E-15 T 11-10-2018 dqs_4018 766f4389dfbb24d0da57176c5faffb4a 204 SUPERFAMILY SSF54593 33 184 1.21E-28 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_4018 766f4389dfbb24d0da57176c5faffb4a 204 Gene3D G3DSA:3.10.180.10 25 181 3.7E-34 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3419 51e633273197e4093e60b8bea1088efb 498 TIGRFAM TIGR03016 pepcterm_hypo_1: uncharacterized protein, PEP-CTERM system associated 12 498 3.4E-100 T 11-10-2018 IPR017467 Conserved hypothetical protein CHP03016, PEP-CTERM dqs_1022 b8c947c0c044d69e328e77ef6a02da77 395 Gene3D G3DSA:1.10.287.950 66 394 9.3E-52 T 11-10-2018 dqs_1022 b8c947c0c044d69e328e77ef6a02da77 395 SUPERFAMILY SSF58104 86 393 3.4E-54 T 11-10-2018 dqs_1022 b8c947c0c044d69e328e77ef6a02da77 395 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 178 360 7.4E-36 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1022 b8c947c0c044d69e328e77ef6a02da77 395 SMART SM00283 132 386 2.1E-37 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_0454 ad3e5ba13fa598d85e4627b646378ff0 347 Gene3D G3DSA:3.60.15.10 66 143 1.8E-16 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0454 ad3e5ba13fa598d85e4627b646378ff0 347 Gene3D G3DSA:3.40.50.10890 144 205 1.8E-16 T 11-10-2018 dqs_0454 ad3e5ba13fa598d85e4627b646378ff0 347 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 3 325 8.2E-151 T 11-10-2018 IPR026360 Putative exonuclease, DNA ligase-associated dqs_0454 ad3e5ba13fa598d85e4627b646378ff0 347 SUPERFAMILY SSF56281 10 324 1.78E-57 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_0961 c50a78fc3beb5c073196fbcdc365c780 307 SUPERFAMILY SSF54211 133 277 2.05E-53 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_0961 c50a78fc3beb5c073196fbcdc365c780 307 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 45.606 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 dqs_0961 c50a78fc3beb5c073196fbcdc365c780 307 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 294 3.0E-120 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 dqs_0961 c50a78fc3beb5c073196fbcdc365c780 307 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 1.8E-106 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 dqs_0961 c50a78fc3beb5c073196fbcdc365c780 307 SUPERFAMILY SSF54211 3 125 9.1E-42 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold dqs_0961 c50a78fc3beb5c073196fbcdc365c780 307 Gene3D G3DSA:3.30.1700.10 128 305 6.4E-68 T 11-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 dqs_0961 c50a78fc3beb5c073196fbcdc365c780 307 Gene3D G3DSA:3.30.230.20 1 127 8.7E-47 T 11-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 dqs_2989 7916665b30f39058938862336fa4e97b 545 ProSitePatterns PS00217 Sugar transport proteins signature 2. 148 173 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 dqs_2989 7916665b30f39058938862336fa4e97b 545 SUPERFAMILY SSF103473 35 544 3.01E-62 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2989 7916665b30f39058938862336fa4e97b 545 Pfam PF00083 Sugar (and other) transporter 38 255 9.7E-26 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 dqs_2989 7916665b30f39058938862336fa4e97b 545 Pfam PF00083 Sugar (and other) transporter 257 349 2.5E-5 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 dqs_1897 f9094ecd8ea308a4fa664456539dce1f 255 Pfam PF04972 BON domain 76 138 6.7E-6 T 11-10-2018 IPR007055 BON domain dqs_1928 eb9a82bc9c76aef9c9ced5159d4ed367 208 SUPERFAMILY SSF47090 3 74 1.67E-15 T 11-10-2018 IPR036365 PGBD-like superfamily dqs_1928 eb9a82bc9c76aef9c9ced5159d4ed367 208 Gene3D G3DSA:1.10.101.10 1 76 1.4E-17 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 dqs_1928 eb9a82bc9c76aef9c9ced5159d4ed367 208 Pfam PF01471 Putative peptidoglycan binding domain 11 73 2.1E-11 T 11-10-2018 IPR002477 Peptidoglycan binding-like dqs_0046 4cb077d81dc3691dac9667d2dd679192 385 Gene3D G3DSA:2.130.10.10 39 157 1.2E-7 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_0046 4cb077d81dc3691dac9667d2dd679192 385 SUPERFAMILY SSF110296 57 323 4.45E-39 T 11-10-2018 dqs_0046 4cb077d81dc3691dac9667d2dd679192 385 Pfam PF14870 Photosynthesis system II assembly factor YCF48 65 124 3.6E-6 T 11-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain dqs_0046 4cb077d81dc3691dac9667d2dd679192 385 Pfam PF14870 Photosynthesis system II assembly factor YCF48 187 312 8.7E-10 T 11-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain dqs_0046 4cb077d81dc3691dac9667d2dd679192 385 Gene3D G3DSA:2.130.10.10 170 326 5.7E-15 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_3062 c0622e98aaa63b556feaeaa5fc5beba4 72 TIGRFAM TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain 1 61 2.9E-11 T 11-10-2018 IPR022516 Nif11-like leader peptide dqs_3062 c0622e98aaa63b556feaeaa5fc5beba4 72 Pfam PF07862 Nif11 domain 1 48 2.6E-13 T 11-10-2018 IPR012903 Nif11 domain dqs_0233 aa554d4bb15e4e9a0fd2827168844e82 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 316 1.0E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_0233 aa554d4bb15e4e9a0fd2827168844e82 318 Gene3D G3DSA:1.10.3720.10 90 308 1.1E-22 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0233 aa554d4bb15e4e9a0fd2827168844e82 318 SUPERFAMILY SSF161098 94 299 1.05E-17 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2597 5b460e8cd8c224a921e2291478293d2b 213 PIRSF PIRSF010372 1 211 2.3E-71 T 11-10-2018 IPR007396 Transcriptional regulator PAI 2-type dqs_2597 5b460e8cd8c224a921e2291478293d2b 213 Gene3D G3DSA:2.30.110.10 1 210 3.3E-70 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_2597 5b460e8cd8c224a921e2291478293d2b 213 Pfam PF04299 Putative FMN-binding domain 1 168 4.6E-61 T 11-10-2018 IPR007396 Transcriptional regulator PAI 2-type dqs_2597 5b460e8cd8c224a921e2291478293d2b 213 SUPERFAMILY SSF50475 9 200 2.03E-37 T 11-10-2018 dqs_4057 dae716a489fc4c27ea32223222ae7224 169 Gene3D G3DSA:3.10.129.10 20 165 5.1E-8 T 11-10-2018 dqs_4057 dae716a489fc4c27ea32223222ae7224 169 SUPERFAMILY SSF54637 24 162 1.07E-13 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_3308 7b16e93dff8c413021b7d9282e4fbb3f 397 Pfam PF12704 MacB-like periplasmic core domain 13 222 3.3E-12 T 11-10-2018 IPR025857 MacB-like periplasmic core domain dqs_3308 7b16e93dff8c413021b7d9282e4fbb3f 397 Pfam PF02687 FtsX-like permease family 290 388 2.0E-8 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_2898 be1babc3765a7db052a78ddd8089a003 176 Pfam PF08750 CNP1-like family 31 163 1.3E-43 T 11-10-2018 IPR014861 Uncharacterised domain CNP1 dqs_3734 8b015e1e3dd1fd48bdabbdebbc755c52 276 Pfam PF01261 Xylose isomerase-like TIM barrel 21 225 1.9E-22 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain dqs_3734 8b015e1e3dd1fd48bdabbdebbc755c52 276 SUPERFAMILY SSF51658 17 274 3.42E-37 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily dqs_3734 8b015e1e3dd1fd48bdabbdebbc755c52 276 Gene3D G3DSA:3.20.20.150 1 269 4.2E-39 T 11-10-2018 dqs_2203 e01344e5638dcd8f80181c3947d704db 422 Pfam PF04285 Protein of unknown function (DUF444) 4 419 4.9E-178 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 dqs_2203 e01344e5638dcd8f80181c3947d704db 422 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 38.105 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 dqs_2068 0ea1227be96dd8d5f7a14f61bd61c2e2 537 Gene3D G3DSA:3.30.70.2700 1 80 3.2E-24 T 11-10-2018 dqs_2068 0ea1227be96dd8d5f7a14f61bd61c2e2 537 Gene3D G3DSA:3.50.50.60 85 304 6.4E-86 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2068 0ea1227be96dd8d5f7a14f61bd61c2e2 537 Gene3D G3DSA:3.50.50.60 464 532 3.1E-15 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2068 0ea1227be96dd8d5f7a14f61bd61c2e2 537 SUPERFAMILY SSF51905 100 528 1.3E-36 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2068 0ea1227be96dd8d5f7a14f61bd61c2e2 537 PIRSF PIRSF038984 1 534 1.3E-244 T 11-10-2018 IPR028348 FAD dependent protein dqs_3744 ff42cc34579e8daceba111ee2af22013 240 Pfam PF03641 Possible lysine decarboxylase 88 218 1.5E-31 T 11-10-2018 IPR031100 LOG family dqs_3744 ff42cc34579e8daceba111ee2af22013 240 SUPERFAMILY SSF102405 18 219 5.65E-61 T 11-10-2018 dqs_3744 ff42cc34579e8daceba111ee2af22013 240 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 46 218 1.9E-42 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG dqs_3744 ff42cc34579e8daceba111ee2af22013 240 Gene3D G3DSA:3.40.50.450 23 222 2.1E-63 T 11-10-2018 dqs_3243 9e75ad1cd5c726b55746abb8dda26ae5 723 PIRSF PIRSF036354 1 720 1.3E-173 T 11-10-2018 IPR011399 Nitrous oxide reductase expression regulator NosR GO:0003677|GO:0016020|GO:0045893 dqs_3243 9e75ad1cd5c726b55746abb8dda26ae5 723 Pfam PF12801 4Fe-4S binding domain 490 533 2.5E-14 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3243 9e75ad1cd5c726b55746abb8dda26ae5 723 Pfam PF12801 4Fe-4S binding domain 598 625 1.4E-4 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain dqs_3243 9e75ad1cd5c726b55746abb8dda26ae5 723 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 642 653 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3243 9e75ad1cd5c726b55746abb8dda26ae5 723 SMART SM00900 95 189 1.7E-10 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 dqs_3243 9e75ad1cd5c726b55746abb8dda26ae5 723 SUPERFAMILY SSF54862 502 674 1.86E-10 T 11-10-2018 dqs_0335 8c30ed91482f10dc180e94ae5edd7a55 107 SUPERFAMILY SSF54913 2 104 5.19E-37 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta dqs_0335 8c30ed91482f10dc180e94ae5edd7a55 107 Gene3D G3DSA:3.30.70.120 1 106 4.0E-39 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal dqs_0335 8c30ed91482f10dc180e94ae5edd7a55 107 Pfam PF03091 CutA1 divalent ion tolerance protein 6 102 4.8E-35 T 11-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 dqs_1951 bde5676371c313097ab72ed5bc3d9266 317 SUPERFAMILY SSF51735 5 313 6.19E-88 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_1951 bde5676371c313097ab72ed5bc3d9266 317 Pfam PF16363 GDP-mannose 4,6 dehydratase 11 308 2.1E-51 T 11-10-2018 IPR016040 NAD(P)-binding domain dqs_1951 bde5676371c313097ab72ed5bc3d9266 317 Gene3D G3DSA:3.40.50.720 9 299 4.7E-102 T 11-10-2018 dqs_1951 bde5676371c313097ab72ed5bc3d9266 317 Gene3D G3DSA:3.90.25.10 189 312 4.7E-102 T 11-10-2018 dqs_0648 9458bd4c84ba196f7e41fd91f4d42aec 487 Pfam PF07690 Major Facilitator Superfamily 26 418 5.2E-25 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_0648 9458bd4c84ba196f7e41fd91f4d42aec 487 SUPERFAMILY SSF103473 21 428 2.49E-31 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2143 bebee94bc4aa050a25b0615187466899 261 SUPERFAMILY SSF102198 18 258 1.03E-54 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 dqs_2143 bebee94bc4aa050a25b0615187466899 261 Pfam PF04199 Putative cyclase 21 197 4.7E-33 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 dqs_2143 bebee94bc4aa050a25b0615187466899 261 Gene3D G3DSA:3.50.30.50 2 260 7.1E-92 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 dqs_3367 1ddf9524726f15f90567651d5abeb213 249 Gene3D G3DSA:3.40.980.10 1 161 5.8E-38 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily dqs_3367 1ddf9524726f15f90567651d5abeb213 249 SUPERFAMILY SSF53218 1 198 5.76E-32 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily dqs_3367 1ddf9524726f15f90567651d5abeb213 249 SMART SM00852 4 164 3.6E-28 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_3367 1ddf9524726f15f90567651d5abeb213 249 Pfam PF00994 Probable molybdopterin binding domain 4 157 3.6E-24 T 11-10-2018 IPR001453 MoaB/Mog domain dqs_4006 ab6eae3d0db6f8fe78bdd21ab068637d 205 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 4 198 4.1E-54 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 dqs_4006 ab6eae3d0db6f8fe78bdd21ab068637d 205 Pfam PF01914 MarC family integral membrane protein 4 201 1.8E-56 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 dqs_4101 e79fc6cd646aa98a4142fcaafa9d0772 128 Gene3D G3DSA:1.20.1290.10 2 124 6.9E-42 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 dqs_4101 e79fc6cd646aa98a4142fcaafa9d0772 128 Pfam PF02627 Carboxymuconolactone decarboxylase family 33 118 7.5E-23 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 dqs_4101 e79fc6cd646aa98a4142fcaafa9d0772 128 SUPERFAMILY SSF69118 3 122 3.45E-36 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 dqs_2181 53103d99d714b7f1641c25c191bc7aaf 152 Gene3D G3DSA:3.30.420.10 1 151 3.2E-58 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_2181 53103d99d714b7f1641c25c191bc7aaf 152 Pfam PF00075 RNase H 2 140 6.8E-50 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 dqs_2181 53103d99d714b7f1641c25c191bc7aaf 152 SUPERFAMILY SSF53098 2 141 3.41E-57 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_2181 53103d99d714b7f1641c25c191bc7aaf 152 Hamap MF_00042 Ribonuclease H [rnhA]. 1 149 35.097 T 11-10-2018 IPR022892 Ribonuclease HI GO:0004523 dqs_2202 2c252b8f9f11c5eaeac8880e78c5cbcb 640 Gene3D G3DSA:3.40.50.300 72 325 1.9E-7 T 11-10-2018 dqs_2202 2c252b8f9f11c5eaeac8880e78c5cbcb 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 3.2E-75 T 11-10-2018 IPR010650 PrkA C-terminal domain dqs_2202 2c252b8f9f11c5eaeac8880e78c5cbcb 640 Pfam PF08298 PrkA AAA domain 19 376 6.8E-174 T 11-10-2018 IPR013153 PrkA AAA domain dqs_2202 2c252b8f9f11c5eaeac8880e78c5cbcb 640 SMART SM00763 19 376 5.0E-219 T 11-10-2018 IPR013153 PrkA AAA domain dqs_2202 2c252b8f9f11c5eaeac8880e78c5cbcb 640 PIRSF PIRSF000549 1 640 4.1E-292 T 11-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 dqs_2202 2c252b8f9f11c5eaeac8880e78c5cbcb 640 SUPERFAMILY SSF52540 75 345 7.58E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3004 86f389d84ad63725c425508174980230 101 SUPERFAMILY SSF54909 5 97 1.23E-29 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel dqs_3004 86f389d84ad63725c425508174980230 101 Gene3D G3DSA:3.30.70.100 1 101 7.2E-39 T 11-10-2018 dqs_3004 86f389d84ad63725c425508174980230 101 Pfam PF08803 Putative mono-oxygenase ydhR 5 100 4.0E-39 T 11-10-2018 IPR014910 Putative monooxygenase YdhR dqs_1238 9124712a83b6bf07a14f23b06af6ce1a 249 Pfam PF00005 ABC transporter 20 175 1.3E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1238 9124712a83b6bf07a14f23b06af6ce1a 249 Gene3D G3DSA:3.40.50.300 4 249 4.1E-58 T 11-10-2018 dqs_1238 9124712a83b6bf07a14f23b06af6ce1a 249 SUPERFAMILY SSF52540 4 244 9.59E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1238 9124712a83b6bf07a14f23b06af6ce1a 249 SMART SM00382 28 221 1.9E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1238 9124712a83b6bf07a14f23b06af6ce1a 249 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 244 1.4E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal dqs_2524 42875ef09065c2e3fcabb6b49e2539fb 500 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 1.1E-151 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 SMART SM00448 2 115 2.9E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 SMART SM00421 146 203 1.8E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 6.1E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 6.1E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 6.1E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 Gene3D G3DSA:3.40.50.12740 2 208 4.7E-61 T 11-10-2018 dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 Pfam PF00072 Response regulator receiver domain 4 115 3.4E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 SUPERFAMILY SSF52172 1 132 9.25E-35 T 11-10-2018 IPR011006 CheY-like superfamily dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 SUPERFAMILY SSF46894 142 208 8.84E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 dqs_2884 dd0936d1f60924ba1ee87b55dbacd714 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 2.6E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 dqs_2971 1874816254a6ad4356c46944d72c3bdb 211 SUPERFAMILY SSF75217 40 210 2.31E-50 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases dqs_2971 1874816254a6ad4356c46944d72c3bdb 211 PIRSF PIRSF015601 1 210 2.6E-45 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 dqs_2971 1874816254a6ad4356c46944d72c3bdb 211 Gene3D G3DSA:3.40.1280.10 1 210 4.5E-65 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal dqs_2971 1874816254a6ad4356c46944d72c3bdb 211 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 1 210 1.7E-47 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 dqs_2971 1874816254a6ad4356c46944d72c3bdb 211 Pfam PF04452 RNA methyltransferase 1 206 7.2E-57 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 dqs_0318 872d94aa02b6e9972c050b12cebbd62a 95 PIRSF PIRSF030200 1 95 2.7E-43 T 11-10-2018 IPR009359 Phenylacetic acid degradation B dqs_0318 872d94aa02b6e9972c050b12cebbd62a 95 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 6 95 1.4E-47 T 11-10-2018 IPR009359 Phenylacetic acid degradation B dqs_0318 872d94aa02b6e9972c050b12cebbd62a 95 Gene3D G3DSA:3.10.20.520 1 65 2.5E-31 T 11-10-2018 IPR038693 Phenylacetyl-CoA epoxidase, subunit B dqs_0318 872d94aa02b6e9972c050b12cebbd62a 95 Pfam PF06243 Phenylacetic acid degradation B 5 92 5.7E-40 T 11-10-2018 IPR009359 Phenylacetic acid degradation B dqs_2004 fac914a8e3a730d192f042635aac7c0e 245 SUPERFAMILY SSF140931 57 97 1.31E-5 T 11-10-2018 IPR036597 Fido-like domain superfamily dqs_2004 fac914a8e3a730d192f042635aac7c0e 245 Gene3D G3DSA:1.20.120.1870 4 141 3.7E-20 T 11-10-2018 dqs_2004 fac914a8e3a730d192f042635aac7c0e 245 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 28 115 9.3E-13 T 11-10-2018 IPR006440 Death on curing protein GO:0016301 dqs_2004 fac914a8e3a730d192f042635aac7c0e 245 Pfam PF02661 Fic/DOC family 10 88 6.4E-8 T 11-10-2018 IPR003812 Fido domain dqs_1224 9019b8f23060616793569281f8a44ff5 171 Gene3D G3DSA:1.25.40.10 18 170 2.8E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_4040 52698f17ecf5aee9614d9d18630898b5 498 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 21 493 2.3E-221 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath dqs_4040 52698f17ecf5aee9614d9d18630898b5 498 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 493 5.2E-192 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath dqs_3608 89b472b366b422cfb26ecdb4906f6823 193 Pfam PF02325 YGGT family 12 78 1.2E-16 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 dqs_3608 89b472b366b422cfb26ecdb4906f6823 193 Pfam PF02325 YGGT family 112 179 1.9E-13 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 dqs_2800 6d5bf4b3295c941977aba922ebf43a66 156 Gene3D G3DSA:3.10.180.10 11 145 2.9E-38 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2800 6d5bf4b3295c941977aba922ebf43a66 156 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 22 129 3.2E-8 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain dqs_2800 6d5bf4b3295c941977aba922ebf43a66 156 SUPERFAMILY SSF54593 12 147 1.1E-32 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3867 d15ac70619d529c981136e2224b6e46f 71 Pfam PF10077 Uncharacterized protein conserved in bacteria (DUF2314) 14 63 1.2E-7 T 11-10-2018 IPR018756 Domain of unknown function DUF2314 dqs_3020 18748a2cf3d3055ead4f6e7387c7db4d 253 SUPERFAMILY SSF56219 1 252 4.06E-77 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_3020 18748a2cf3d3055ead4f6e7387c7db4d 253 Gene3D G3DSA:3.60.10.10 1 252 5.4E-74 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily dqs_3020 18748a2cf3d3055ead4f6e7387c7db4d 253 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 250 7.2E-77 T 11-10-2018 dqs_3020 18748a2cf3d3055ead4f6e7387c7db4d 253 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 208 219 - T 11-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 dqs_3020 18748a2cf3d3055ead4f6e7387c7db4d 253 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 251 7.3E-74 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 dqs_3020 18748a2cf3d3055ead4f6e7387c7db4d 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 244 1.3E-22 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase dqs_4049 13d98f82f320fee1ad8b337458a4a2a4 385 Gene3D G3DSA:3.40.50.1820 55 254 2.4E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_4049 13d98f82f320fee1ad8b337458a4a2a4 385 SUPERFAMILY SSF53474 64 232 5.13E-30 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_4049 13d98f82f320fee1ad8b337458a4a2a4 385 Pfam PF01764 Lipase (class 3) 79 205 2.5E-21 T 11-10-2018 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: R-HSA-426048 dqs_2793 f0fccee6f5206c26a30e8375f98e46ab 272 Gene3D G3DSA:3.40.50.1820 27 269 2.5E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2793 f0fccee6f5206c26a30e8375f98e46ab 272 Pfam PF01738 Dienelactone hydrolase family 44 269 2.4E-60 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 dqs_2793 f0fccee6f5206c26a30e8375f98e46ab 272 SUPERFAMILY SSF53474 32 269 1.19E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2308 a7719f24887e79e126a929b0feda3598 1124 Pfam PF05567 Neisseria PilC beta-propeller domain 609 945 4.5E-13 T 11-10-2018 IPR008707 PilC beta-propeller domain dqs_2688 6a7391632079fcd9148e667599e9579f 234 Gene3D G3DSA:3.40.50.880 1 231 7.1E-56 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_2688 6a7391632079fcd9148e667599e9579f 234 Pfam PF00117 Glutamine amidotransferase class-I 43 181 1.1E-17 T 11-10-2018 IPR017926 Glutamine amidotransferase dqs_2688 6a7391632079fcd9148e667599e9579f 234 SUPERFAMILY SSF52317 29 229 9.89E-43 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3997 833abc2e5637ca86c74ce307e7c20c7f 383 Pfam PF05175 Methyltransferase small domain 201 320 2.2E-10 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 dqs_3997 833abc2e5637ca86c74ce307e7c20c7f 383 Gene3D G3DSA:3.40.50.150 192 368 9.0E-27 T 11-10-2018 dqs_3997 833abc2e5637ca86c74ce307e7c20c7f 383 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 272 278 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 dqs_3997 833abc2e5637ca86c74ce307e7c20c7f 383 SUPERFAMILY SSF53335 168 321 2.79E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2267 421a863fa09bb8e6a9f38678f4f2c7f9 526 Pfam PF01384 Phosphate transporter family 62 512 1.5E-100 T 11-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 dqs_0049 4cda254e1ae28fef165fe2905e771096 734 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 159 551 3.4E-94 T 11-10-2018 IPR003776 YcaO-like domain dqs_0049 4cda254e1ae28fef165fe2905e771096 734 TIGRFAM TIGR03549 TIGR03549: YcaO domain protein 2 727 0.0 T 11-10-2018 IPR019938 YcaO domain protein dqs_0049 4cda254e1ae28fef165fe2905e771096 734 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 205 540 6.0E-69 T 11-10-2018 IPR003776 YcaO-like domain dqs_0049 4cda254e1ae28fef165fe2905e771096 734 Pfam PF02566 OsmC-like protein 32 126 5.4E-9 T 11-10-2018 IPR003718 OsmC/Ohr family dqs_0049 4cda254e1ae28fef165fe2905e771096 734 SUPERFAMILY SSF82784 1 125 6.28E-19 T 11-10-2018 IPR036102 OsmC/Ohr superfamily dqs_0049 4cda254e1ae28fef165fe2905e771096 734 Gene3D G3DSA:3.30.300.20 3 128 1.5E-14 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta dqs_3657 488f18b60a5b20813d00f7c8e5316aeb 257 SUPERFAMILY SSF161098 51 233 1.02E-27 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3657 488f18b60a5b20813d00f7c8e5316aeb 257 Gene3D G3DSA:1.10.3720.10 52 246 2.1E-21 T 11-10-2018 IPR035906 MetI-like superfamily dqs_3657 488f18b60a5b20813d00f7c8e5316aeb 257 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 246 9.6E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_3669 31af0b39057e500915fb2336bc35505a 255 Gene3D G3DSA:3.60.15.10 15 236 7.1E-40 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3669 31af0b39057e500915fb2336bc35505a 255 SUPERFAMILY SSF56281 6 227 6.29E-36 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3669 31af0b39057e500915fb2336bc35505a 255 SMART SM00849 29 220 1.1E-17 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3669 31af0b39057e500915fb2336bc35505a 255 Pfam PF00753 Metallo-beta-lactamase superfamily 29 220 3.9E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_1318 87393fe71f549e65f97566ada53ad5f7 142 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 97 7.5E-11 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain dqs_1318 87393fe71f549e65f97566ada53ad5f7 142 SUPERFAMILY SSF54534 5 140 1.77E-32 T 11-10-2018 dqs_1318 87393fe71f549e65f97566ada53ad5f7 142 Gene3D G3DSA:3.10.50.40 14 139 5.3E-36 T 11-10-2018 dqs_1318 87393fe71f549e65f97566ada53ad5f7 142 Gene3D G3DSA:2.40.10.330 72 127 5.3E-36 T 11-10-2018 dqs_0035 f14f7a8f26c7d50977e20b1e87df7435 188 Gene3D G3DSA:2.30.110.10 3 188 2.4E-52 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 dqs_0035 f14f7a8f26c7d50977e20b1e87df7435 188 SMART SM00903 16 162 2.1E-28 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_0035 f14f7a8f26c7d50977e20b1e87df7435 188 Pfam PF01613 Flavin reductase like domain 18 154 1.3E-21 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 dqs_0035 f14f7a8f26c7d50977e20b1e87df7435 188 SUPERFAMILY SSF50475 2 186 7.36E-43 T 11-10-2018 dqs_0568 503b93b1dd7ed1796ac66e855a0b1ed7 161 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 20 159 4.5E-57 T 11-10-2018 IPR004952 Uncharacterised protein family UPF0460 dqs_0568 503b93b1dd7ed1796ac66e855a0b1ed7 161 Pfam PF03270 Protein of unknown function, DUF269 40 159 1.4E-49 T 11-10-2018 IPR004952 Uncharacterised protein family UPF0460 dqs_0568 503b93b1dd7ed1796ac66e855a0b1ed7 161 PIRSF PIRSF005788 3 161 2.7E-66 T 11-10-2018 IPR004952 Uncharacterised protein family UPF0460 dqs_0568 503b93b1dd7ed1796ac66e855a0b1ed7 161 Gene3D G3DSA:1.10.3100.20 5 160 8.1E-56 T 11-10-2018 dqs_2586 8f7c4b35811378acfff1f537916df8ac 89 SUPERFAMILY SSF56029 3 88 3.53E-33 T 11-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 dqs_2586 8f7c4b35811378acfff1f537916df8ac 89 ProDom PD004249 MONOOXYGENASE COMPONENT HYDROXYLASE MMOB/DMPM PHENOL SUBUNIT 3D-STRUCTURE HYDROCARBONS IRON PHENOLHYDROXYLASE 8 88 1.0E-26 T 11-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 dqs_2586 8f7c4b35811378acfff1f537916df8ac 89 Pfam PF02406 MmoB/DmpM family 3 85 5.5E-34 T 11-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 dqs_2586 8f7c4b35811378acfff1f537916df8ac 89 Gene3D G3DSA:3.90.56.10 1 88 1.1E-36 T 11-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 dqs_4095 044bad50c60e49fe283419918b0f2ba9 71 Pfam PF01192 RNA polymerase Rpb6 8 61 7.2E-16 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 dqs_4095 044bad50c60e49fe283419918b0f2ba9 71 Gene3D G3DSA:3.90.940.10 1 71 7.8E-23 T 11-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 dqs_4095 044bad50c60e49fe283419918b0f2ba9 71 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 61 4.3E-22 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_4095 044bad50c60e49fe283419918b0f2ba9 71 SUPERFAMILY SSF63562 1 68 3.92E-22 T 11-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 dqs_4095 044bad50c60e49fe283419918b0f2ba9 71 SMART SM01409 8 63 1.7E-15 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 dqs_4095 044bad50c60e49fe283419918b0f2ba9 71 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 64 17.213 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 dqs_2454 eb96e1b12dca1543883ce827296d6cd1 279 Gene3D G3DSA:3.20.20.370 5 238 6.3E-63 T 11-10-2018 dqs_2454 eb96e1b12dca1543883ce827296d6cd1 279 Pfam PF01522 Polysaccharide deacetylase 72 204 5.2E-29 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 dqs_2454 eb96e1b12dca1543883ce827296d6cd1 279 SUPERFAMILY SSF88713 32 206 1.24E-41 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 dqs_2050 4fb28590a90b60438c16276b7c85c273 204 SUPERFAMILY SSF53098 6 197 1.32E-66 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily dqs_2050 4fb28590a90b60438c16276b7c85c273 204 Pfam PF01351 Ribonuclease HII 11 186 4.6E-38 T 11-10-2018 IPR024567 Ribonuclease HII/HIII domain dqs_2050 4fb28590a90b60438c16276b7c85c273 204 Hamap MF_00052_B Ribonuclease HII [rnhB]. 9 188 35.537 T 11-10-2018 IPR022898 Ribonuclease HII GO:0004523 dqs_2050 4fb28590a90b60438c16276b7c85c273 204 Gene3D G3DSA:3.30.420.10 2 202 1.7E-72 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 dqs_2404 e1d310d4388b65942cb6bf2163a5eb0c 638 Pfam PF02705 K+ potassium transporter 29 560 7.6E-212 T 11-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 dqs_2404 e1d310d4388b65942cb6bf2163a5eb0c 638 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 20 638 34.978 T 11-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup dqs_1377 834c28bd9cb84c2aa71441b7905ecd4a 208 Pfam PF04011 LemA family 14 199 4.0E-63 T 11-10-2018 IPR007156 LemA dqs_1377 834c28bd9cb84c2aa71441b7905ecd4a 208 Gene3D G3DSA:1.20.1440.20 21 199 2.8E-58 T 11-10-2018 IPR023353 LemA-like domain superfamily dqs_1377 834c28bd9cb84c2aa71441b7905ecd4a 208 SUPERFAMILY SSF140478 29 185 1.22E-51 T 11-10-2018 IPR023353 LemA-like domain superfamily dqs_3027 b2dfef292d3072caf23ad0d376c96561 817 Pfam PF03968 OstA-like protein 129 243 1.4E-4 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal dqs_3027 b2dfef292d3072caf23ad0d376c96561 817 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 69 786 19.169 T 11-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 dqs_3027 b2dfef292d3072caf23ad0d376c96561 817 Pfam PF04453 Organic solvent tolerance protein 350 726 1.5E-106 T 11-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 dqs_2729 c9bee5a31ef5fe29c5701ff37420e685 400 Gene3D G3DSA:2.40.50.100 72 217 1.5E-96 T 11-10-2018 dqs_2729 c9bee5a31ef5fe29c5701ff37420e685 400 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 48 375 2.1E-83 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 dqs_2729 c9bee5a31ef5fe29c5701ff37420e685 400 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 74 295 8.5E-16 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain dqs_2729 c9bee5a31ef5fe29c5701ff37420e685 400 SUPERFAMILY SSF111369 62 300 2.75E-62 T 11-10-2018 dqs_2729 c9bee5a31ef5fe29c5701ff37420e685 400 Gene3D G3DSA:2.40.30.170 59 305 1.5E-96 T 11-10-2018 dqs_2729 c9bee5a31ef5fe29c5701ff37420e685 400 Gene3D G3DSA:1.10.287.470 107 180 1.5E-96 T 11-10-2018 dqs_2729 c9bee5a31ef5fe29c5701ff37420e685 400 Gene3D G3DSA:2.40.420.20 306 373 1.5E-96 T 11-10-2018 dqs_3939 6c89002a06ae8e497799bf1e4fc97542 598 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 574 583 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 dqs_3939 6c89002a06ae8e497799bf1e4fc97542 598 SUPERFAMILY SSF56762 12 583 1.83E-184 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3939 6c89002a06ae8e497799bf1e4fc97542 598 Pfam PF00374 Nickel-dependent hydrogenase 55 583 1.1E-237 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 dqs_3939 6c89002a06ae8e497799bf1e4fc97542 598 Gene3D G3DSA:1.10.645.10 3 583 6.2E-276 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3939 6c89002a06ae8e497799bf1e4fc97542 598 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 55 80 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 dqs_2630 da6fb8fb3cae1125c4bd75083c7b036a 286 SUPERFAMILY SSF56281 7 285 9.8E-46 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_2630 da6fb8fb3cae1125c4bd75083c7b036a 286 Pfam PF00753 Metallo-beta-lactamase superfamily 13 204 1.5E-22 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_2630 da6fb8fb3cae1125c4bd75083c7b036a 286 Gene3D G3DSA:3.60.15.10 2 286 6.6E-102 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_2630 da6fb8fb3cae1125c4bd75083c7b036a 286 SMART SM00849 13 204 7.4E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3722 879ed867d179a2458087281e693cbded 594 Gene3D G3DSA:3.30.420.40 14 354 7.2E-82 T 11-10-2018 dqs_3722 879ed867d179a2458087281e693cbded 594 Pfam PF02543 Carbamoyltransferase N-terminus 5 354 4.3E-54 T 11-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 dqs_3722 879ed867d179a2458087281e693cbded 594 SUPERFAMILY SSF53067 18 358 3.63E-12 T 11-10-2018 dqs_3722 879ed867d179a2458087281e693cbded 594 Pfam PF16861 Carbamoyltransferase C-terminus 410 579 4.3E-62 T 11-10-2018 IPR031730 Carbamoyltransferase, C-terminal dqs_3722 879ed867d179a2458087281e693cbded 594 Gene3D G3DSA:3.30.420.350 133 348 7.2E-82 T 11-10-2018 dqs_3722 879ed867d179a2458087281e693cbded 594 Gene3D G3DSA:3.90.870.20 368 578 1.4E-70 T 11-10-2018 IPR038152 Carbamoyltransferase, C-terminal domain superfamily dqs_3007 5cc8b529d568fc627d0184e44eae648b 268 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 11 243 4.6E-41 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 dqs_3007 5cc8b529d568fc627d0184e44eae648b 268 SUPERFAMILY SSF53213 9 264 1.31E-85 T 11-10-2018 dqs_3007 5cc8b529d568fc627d0184e44eae648b 268 Gene3D G3DSA:3.40.830.10 1 264 1.9E-83 T 11-10-2018 dqs_3007 5cc8b529d568fc627d0184e44eae648b 268 PIRSF PIRSF006157 5 265 2.7E-81 T 11-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 dqs_1516 dd975b9287e141a4959dbf8d7b40e9d1 254 Gene3D G3DSA:3.40.50.300 6 252 3.4E-68 T 11-10-2018 dqs_1516 dd975b9287e141a4959dbf8d7b40e9d1 254 Pfam PF00005 ABC transporter 23 179 6.0E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_1516 dd975b9287e141a4959dbf8d7b40e9d1 254 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 8 254 3.4E-122 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 dqs_1516 dd975b9287e141a4959dbf8d7b40e9d1 254 SUPERFAMILY SSF52540 7 240 1.18E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1516 dd975b9287e141a4959dbf8d7b40e9d1 254 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_1516 dd975b9287e141a4959dbf8d7b40e9d1 254 SMART SM00382 32 226 1.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1697 881c41674cfcd2aee3b3528f107f91d4 519 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 2 501 43.79 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 dqs_1697 881c41674cfcd2aee3b3528f107f91d4 519 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 22 484 6.9E-135 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 dqs_3384 8fcf181ebf76c7251a7f48e05440d8ef 598 SUPERFAMILY SSF52402 189 589 3.93E-63 T 11-10-2018 dqs_3384 8fcf181ebf76c7251a7f48e05440d8ef 598 PIRSF PIRSF001589 70 597 3.3E-82 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 dqs_3384 8fcf181ebf76c7251a7f48e05440d8ef 598 Pfam PF13537 Glutamine amidotransferase domain 77 138 1.5E-7 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain dqs_3384 8fcf181ebf76c7251a7f48e05440d8ef 598 Pfam PF00733 Asparagine synthase 212 591 8.1E-72 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 dqs_3384 8fcf181ebf76c7251a7f48e05440d8ef 598 Gene3D G3DSA:3.60.20.10 66 191 3.8E-17 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_3384 8fcf181ebf76c7251a7f48e05440d8ef 598 SUPERFAMILY SSF56235 77 193 9.07E-17 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal dqs_4112 3d0a71089823fbcf949e53e93793ef37 261 Pfam PF05690 Thiazole biosynthesis protein ThiG 7 254 1.2E-106 T 11-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 dqs_4112 3d0a71089823fbcf949e53e93793ef37 261 SUPERFAMILY SSF110399 3 245 4.45E-89 T 11-10-2018 dqs_4112 3d0a71089823fbcf949e53e93793ef37 261 Hamap MF_00443 Thiazole synthase [thiG]. 4 260 42.216 T 11-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 dqs_4112 3d0a71089823fbcf949e53e93793ef37 261 Gene3D G3DSA:3.20.20.70 1 260 3.7E-118 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 dqs_2032 2fbc9d923abeaca354683208b357e5e5 358 Gene3D G3DSA:3.40.50.720 2 321 5.3E-129 T 11-10-2018 dqs_2032 2fbc9d923abeaca354683208b357e5e5 358 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 335 6.9E-150 T 11-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 dqs_2032 2fbc9d923abeaca354683208b357e5e5 358 Pfam PF16363 GDP-mannose 4,6 dehydratase 3 322 6.7E-97 T 11-10-2018 IPR016040 NAD(P)-binding domain dqs_2032 2fbc9d923abeaca354683208b357e5e5 358 SUPERFAMILY SSF51735 2 348 8.46E-90 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2032 2fbc9d923abeaca354683208b357e5e5 358 Gene3D G3DSA:3.90.25.10 200 329 5.3E-129 T 11-10-2018 dqs_3424 5f343b64645c2ceea2dc95ebe4111cda 437 SUPERFAMILY SSF56935 47 435 1.77E-15 T 11-10-2018 dqs_3424 5f343b64645c2ceea2dc95ebe4111cda 437 Pfam PF13609 Gram-negative porin 10 378 3.2E-8 T 11-10-2018 dqs_1555 79ea3c9bbc00877e21d3f59c7b28a2c7 282 Gene3D G3DSA:3.40.50.300 2 203 9.8E-28 T 11-10-2018 dqs_1555 79ea3c9bbc00877e21d3f59c7b28a2c7 282 SUPERFAMILY SSF52540 9 238 8.23E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1555 79ea3c9bbc00877e21d3f59c7b28a2c7 282 SMART SM00382 27 185 2.9E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_1555 79ea3c9bbc00877e21d3f59c7b28a2c7 282 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 31 178 2.1E-13 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 dqs_2276 cee36d29b984dcdfe487780a64519882 91 Pfam PF04977 Septum formation initiator 11 90 3.9E-26 T 11-10-2018 IPR007060 Septum formation initiator FtsL/DivIC dqs_2276 cee36d29b984dcdfe487780a64519882 91 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 34.725 T 11-10-2018 IPR023081 Cell division protein FtsB dqs_3295 369fd3c369eb7abd98a1cadbf8029e9d 116 Pfam PF09842 Predicted membrane protein (DUF2069) 10 109 2.6E-32 T 11-10-2018 IPR018643 Protein of unknown function DUF2069, membrane dqs_3888 61aee7a416cf43de8b208691c6680af9 83 Pfam PF04380 Membrane fusogenic activity 1 75 7.0E-27 T 11-10-2018 IPR007475 Membrane fusogenic activity dqs_0857 dc1ed280f6d5a5989fbde57c296ec2d5 177 Gene3D G3DSA:3.40.50.1000 1 177 9.1E-54 T 11-10-2018 IPR023214 HAD superfamily dqs_0857 dc1ed280f6d5a5989fbde57c296ec2d5 177 SUPERFAMILY SSF56784 2 171 2.48E-44 T 11-10-2018 IPR036412 HAD-like superfamily dqs_0857 dc1ed280f6d5a5989fbde57c296ec2d5 177 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 3 145 8.4E-45 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 dqs_0857 dc1ed280f6d5a5989fbde57c296ec2d5 177 PIRSF PIRSF004682 1 175 1.9E-53 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 dqs_0857 dc1ed280f6d5a5989fbde57c296ec2d5 177 Pfam PF13242 HAD-hyrolase-like 99 157 7.5E-10 T 11-10-2018 dqs_0857 dc1ed280f6d5a5989fbde57c296ec2d5 177 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 2 144 4.2E-34 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 99 109 3.6E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 157 168 3.6E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 195 207 3.6E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 301 318 3.6E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 54 65 3.6E-9 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 Pfam PF13609 Gram-negative porin 7 326 6.3E-55 T 11-10-2018 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 Gene3D G3DSA:2.40.160.10 11 371 1.5E-77 T 11-10-2018 IPR023614 Porin domain superfamily dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 PRINTS PR00184 Neisseria sp. porin signature 298 322 2.2E-9 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 PRINTS PR00184 Neisseria sp. porin signature 56 81 2.2E-9 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 PRINTS PR00184 Neisseria sp. porin signature 156 173 2.2E-9 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3428 b7d816aaad07c9d4e3ac092492e8a541 371 SUPERFAMILY SSF56935 21 371 6.11E-65 T 11-10-2018 dqs_3253 391314ce905cb6a695c1a6c9d3ff0ee4 192 Gene3D G3DSA:3.30.870.10 33 184 8.6E-35 T 11-10-2018 dqs_3253 391314ce905cb6a695c1a6c9d3ff0ee4 192 SUPERFAMILY SSF56024 36 185 5.38E-29 T 11-10-2018 dqs_3253 391314ce905cb6a695c1a6c9d3ff0ee4 192 Pfam PF13091 PLD-like domain 51 173 4.0E-20 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 dqs_3705 cc6fe0c4dada7a64816bcd516fdb85f9 183 SUPERFAMILY SSF53254 1 173 1.86E-36 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_3705 cc6fe0c4dada7a64816bcd516fdb85f9 183 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 182 5.0E-31 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_3705 cc6fe0c4dada7a64816bcd516fdb85f9 183 SMART SM00855 2 144 6.4E-12 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 dqs_3705 cc6fe0c4dada7a64816bcd516fdb85f9 183 Gene3D G3DSA:3.40.50.1240 1 180 4.3E-31 T 11-10-2018 IPR029033 Histidine phosphatase superfamily dqs_1941 7c306e88f3e9a8c2cc98b3fc6642ee36 376 SUPERFAMILY SSF50182 184 249 3.07E-14 T 11-10-2018 IPR010920 LSM domain superfamily dqs_1941 7c306e88f3e9a8c2cc98b3fc6642ee36 376 Pfam PF00924 Mechanosensitive ion channel 148 336 1.7E-25 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 dqs_1566 502ec0b6357cdab71704392c022acaed 209 SMART SM00507 100 153 1.1E-10 T 11-10-2018 IPR003615 HNH nuclease dqs_1566 502ec0b6357cdab71704392c022acaed 209 Pfam PF14279 HNH endonuclease 113 167 2.0E-16 T 11-10-2018 IPR029471 HNH endonuclease 5 dqs_1566 502ec0b6357cdab71704392c022acaed 209 Gene3D G3DSA:3.30.40.60 93 182 6.4E-23 T 11-10-2018 dqs_1591 ec4a4cbea70bd23f7ab87fa17500454a 202 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 186 1.8E-33 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel dqs_0128 a0afb7f4809e571fdef87ddd91680ba9 240 SMART SM00382 36 217 3.0E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain dqs_0128 a0afb7f4809e571fdef87ddd91680ba9 240 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 dqs_0128 a0afb7f4809e571fdef87ddd91680ba9 240 Gene3D G3DSA:3.40.50.300 7 234 9.9E-53 T 11-10-2018 dqs_0128 a0afb7f4809e571fdef87ddd91680ba9 240 Pfam PF00005 ABC transporter 27 168 4.3E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 dqs_0128 a0afb7f4809e571fdef87ddd91680ba9 240 SUPERFAMILY SSF52540 11 234 4.2E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2731 568588b3d04af8f6f7ba7161e74ad45c 508 Pfam PF02321 Outer membrane efflux protein 79 271 2.5E-28 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_2731 568588b3d04af8f6f7ba7161e74ad45c 508 Pfam PF02321 Outer membrane efflux protein 295 482 3.9E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_2731 568588b3d04af8f6f7ba7161e74ad45c 508 Gene3D G3DSA:2.20.200.10 116 373 1.2E-137 T 11-10-2018 dqs_2731 568588b3d04af8f6f7ba7161e74ad45c 508 Gene3D G3DSA:1.20.1600.10 69 485 1.2E-137 T 11-10-2018 dqs_2731 568588b3d04af8f6f7ba7161e74ad45c 508 SUPERFAMILY SSF56954 9 486 1.4E-110 T 11-10-2018 dqs_2731 568588b3d04af8f6f7ba7161e74ad45c 508 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 484 1.9E-121 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 dqs_0308 d19098b6ffac670a9d2ad04a1f9ce732 144 Gene3D G3DSA:1.10.3680.10 11 138 4.9E-7 T 11-10-2018 IPR029024 TerB-like dqs_0308 d19098b6ffac670a9d2ad04a1f9ce732 144 Pfam PF05099 Tellurite resistance protein TerB 7 129 2.6E-5 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal dqs_0308 d19098b6ffac670a9d2ad04a1f9ce732 144 SUPERFAMILY SSF158682 11 136 3.79E-10 T 11-10-2018 IPR029024 TerB-like dqs_4061 a86663eba884d725708e28b5b469788c 255 Pfam PF00535 Glycosyl transferase family 2 11 140 1.6E-21 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_4061 a86663eba884d725708e28b5b469788c 255 SUPERFAMILY SSF53448 10 250 1.05E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_4061 a86663eba884d725708e28b5b469788c 255 Gene3D G3DSA:3.90.550.10 6 238 4.9E-25 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0394 8491c52a43cbca307608f765533f1d45 215 Gene3D G3DSA:3.40.30.10 29 214 1.1E-44 T 11-10-2018 dqs_0394 8491c52a43cbca307608f765533f1d45 215 Pfam PF01323 DSBA-like thioredoxin domain 83 186 4.7E-13 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 dqs_0394 8491c52a43cbca307608f765533f1d45 215 ProSitePatterns PS00194 Thioredoxin family active site. 50 68 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 dqs_0394 8491c52a43cbca307608f765533f1d45 215 SUPERFAMILY SSF52833 37 205 1.16E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0394 8491c52a43cbca307608f765533f1d45 215 PIRSF PIRSF001488 8 212 1.8E-39 T 11-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL dqs_2313 3c431ec0eaf5ee54cdc69b3f7652de00 137 PRINTS PR00813 Bacterial general secretion pathway protein G signature 54 72 1.4E-9 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 dqs_2313 3c431ec0eaf5ee54cdc69b3f7652de00 137 PRINTS PR00813 Bacterial general secretion pathway protein G signature 18 43 1.4E-9 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 dqs_2313 3c431ec0eaf5ee54cdc69b3f7652de00 137 Pfam PF07963 Prokaryotic N-terminal methylation motif 14 38 6.2E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2313 3c431ec0eaf5ee54cdc69b3f7652de00 137 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 17 37 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2313 3c431ec0eaf5ee54cdc69b3f7652de00 137 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 38 3.4E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2313 3c431ec0eaf5ee54cdc69b3f7652de00 137 Gene3D G3DSA:3.30.700.10 19 137 5.1E-22 T 11-10-2018 dqs_2313 3c431ec0eaf5ee54cdc69b3f7652de00 137 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 40 122 2.2E-15 T 11-10-2018 IPR031982 Type IV minor pilin ComP dqs_2313 3c431ec0eaf5ee54cdc69b3f7652de00 137 SUPERFAMILY SSF54523 19 134 1.52E-23 T 11-10-2018 dqs_2545 822765f5c6efb4ec0906ffc79f5760c6 189 Pfam PF13689 Domain of unknown function (DUF4154) 43 185 1.1E-34 T 11-10-2018 IPR025293 YfiR-like dqs_3517 7b7e9b5b38522f62739461991aa077dc 278 Gene3D G3DSA:3.40.50.720 16 275 3.1E-92 T 11-10-2018 dqs_3517 7b7e9b5b38522f62739461991aa077dc 278 SUPERFAMILY SSF69572 23 268 5.23E-60 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 dqs_3517 7b7e9b5b38522f62739461991aa077dc 278 Pfam PF00899 ThiF family 34 267 1.7E-39 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 dqs_3898 031a0365c4323bc0ebe03482370b0e05 201 SUPERFAMILY SSF52833 6 194 5.72E-40 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3898 031a0365c4323bc0ebe03482370b0e05 201 PIRSF PIRSF006386 1 200 6.3E-51 T 11-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 dqs_3898 031a0365c4323bc0ebe03482370b0e05 201 Gene3D G3DSA:3.40.30.10 5 200 1.6E-55 T 11-10-2018 dqs_3898 031a0365c4323bc0ebe03482370b0e05 201 Pfam PF01323 DSBA-like thioredoxin domain 7 191 2.4E-33 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 dqs_1096 5d8744ab2e7480bbf4d9714c38e08cd2 398 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 37 372 2.5E-66 T 11-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX dqs_0403 77dbaf038638b212c9daeffb213d6635 155 SUPERFAMILY SSF54637 10 150 3.17E-28 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_0403 77dbaf038638b212c9daeffb213d6635 155 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 29 144 1.1E-16 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 dqs_0403 77dbaf038638b212c9daeffb213d6635 155 Pfam PF03061 Thioesterase superfamily 58 131 7.7E-11 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 dqs_0403 77dbaf038638b212c9daeffb213d6635 155 Gene3D G3DSA:3.10.129.10 9 149 1.3E-34 T 11-10-2018 dqs_0204 08dc3491d3117b76b0cd8e3a54b5669b 339 Pfam PF04245 37-kD nucleoid-associated bacterial protein 12 328 1.2E-58 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 Pfam PF00384 Molybdopterin oxidoreductase 129 576 3.4E-57 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 Gene3D G3DSA:2.40.40.20 780 967 1.4E-42 T 11-10-2018 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 29 48 4.0E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_3625 31b3aec578689b45f6355d701dead4c0 967 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 77 94 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 SMART SM00926 72 126 1.6E-13 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 Pfam PF01568 Molydopterin dinucleotide binding domain 833 960 1.2E-17 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 SUPERFAMILY SSF50692 767 967 4.07E-36 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily dqs_3625 31b3aec578689b45f6355d701dead4c0 967 SUPERFAMILY SSF53706 73 651 6.94E-202 T 11-10-2018 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 73 123 7.3E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 PIRSF PIRSF036643 800 966 9.8E-14 T 11-10-2018 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 PIRSF PIRSF036643 27 590 8.2E-116 T 11-10-2018 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 Gene3D G3DSA:3.40.50.740 138 628 2.1E-130 T 11-10-2018 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 Gene3D G3DSA:2.20.25.90 73 125 2.3E-11 T 11-10-2018 dqs_3625 31b3aec578689b45f6355d701dead4c0 967 Gene3D G3DSA:3.40.228.10 206 404 2.1E-130 T 11-10-2018 dqs_3435 9ff1021d8b2028b763d1a9be05445f2b 240 Pfam PF02104 SURF1 family 16 214 2.2E-37 T 11-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_1101 349e15a491b66e2ab4201b9d0389a0ff 353 SUPERFAMILY SSF56176 10 171 5.14E-32 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 dqs_1101 349e15a491b66e2ab4201b9d0389a0ff 353 Pfam PF02913 FAD linked oxidases, C-terminal domain 325 348 2.8E-4 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 dqs_1101 349e15a491b66e2ab4201b9d0389a0ff 353 Pfam PF01565 FAD binding domain 10 132 1.8E-22 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 dqs_1101 349e15a491b66e2ab4201b9d0389a0ff 353 Gene3D G3DSA:3.30.465.10 51 170 4.7E-33 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 dqs_1101 349e15a491b66e2ab4201b9d0389a0ff 353 SUPERFAMILY SSF55103 131 349 2.35E-22 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 dqs_2330 5162bf3cfe34be2441c64a50117ff3be 151 SUPERFAMILY SSF52833 4 151 2.21E-47 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_2330 5162bf3cfe34be2441c64a50117ff3be 151 PIRSF PIRSF000239 2 151 7.9E-24 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_2330 5162bf3cfe34be2441c64a50117ff3be 151 Gene3D G3DSA:3.40.30.10 1 150 1.9E-46 T 11-10-2018 dqs_2330 5162bf3cfe34be2441c64a50117ff3be 151 Pfam PF00578 AhpC/TSA family 6 129 5.6E-35 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_3052 e53993035f8e5b8da238649c205cd8ab 469 SUPERFAMILY SSF56954 3 461 1.16E-110 T 11-10-2018 dqs_3052 e53993035f8e5b8da238649c205cd8ab 469 Gene3D G3DSA:1.20.1600.10 51 460 3.1E-137 T 11-10-2018 dqs_3052 e53993035f8e5b8da238649c205cd8ab 469 Gene3D G3DSA:2.20.200.10 97 349 3.1E-137 T 11-10-2018 dqs_3052 e53993035f8e5b8da238649c205cd8ab 469 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 460 1.2E-121 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 dqs_3052 e53993035f8e5b8da238649c205cd8ab 469 Pfam PF02321 Outer membrane efflux protein 277 458 1.9E-26 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_3052 e53993035f8e5b8da238649c205cd8ab 469 Pfam PF02321 Outer membrane efflux protein 61 250 4.3E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0386 641cc309e9271c28e62b3c11802c62d1 337 Pfam PF01136 Peptidase family U32 83 336 6.6E-65 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 dqs_4048 504cacddb0df5d23280a4faa2c94c746 129 SUPERFAMILY SSF49464 10 74 4.71E-5 T 11-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily dqs_2780 96f069a41df158a73971372e62fb6ed0 285 Gene3D G3DSA:3.40.50.150 1 258 8.4E-40 T 11-10-2018 dqs_2780 96f069a41df158a73971372e62fb6ed0 285 Pfam PF13649 Methyltransferase domain 54 149 2.3E-20 T 11-10-2018 dqs_2780 96f069a41df158a73971372e62fb6ed0 285 SUPERFAMILY SSF53335 25 219 3.32E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_2794 3cc9130066d43d8fdfbb2f0c51b9de02 435 Pfam PF05977 Transmembrane secretion effector 10 394 1.5E-38 T 11-10-2018 IPR010290 Transmembrane secretion effector dqs_2794 3cc9130066d43d8fdfbb2f0c51b9de02 435 SUPERFAMILY SSF103473 15 397 3.01E-32 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2794 3cc9130066d43d8fdfbb2f0c51b9de02 435 Gene3D G3DSA:1.20.1250.20 15 394 5.1E-24 T 11-10-2018 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 51.09 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 Gene3D G3DSA:3.90.226.10 1 318 8.3E-123 T 11-10-2018 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 4.2E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 4.2E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 4.2E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 4.2E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 4.2E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 4.2E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 148 4.1E-68 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 318 1.8E-157 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 dqs_0987 ec561e0729bf7978f8daf362dfbe28a4 321 SUPERFAMILY SSF52096 5 316 5.15E-106 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_3857 42242a0e8a4a349a013abb0ef8c12199 248 SUPERFAMILY SSF53335 5 244 1.38E-46 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3857 42242a0e8a4a349a013abb0ef8c12199 248 Pfam PF13649 Methyltransferase domain 40 134 1.7E-10 T 11-10-2018 dqs_3857 42242a0e8a4a349a013abb0ef8c12199 248 Gene3D G3DSA:3.40.50.150 1 248 2.9E-101 T 11-10-2018 dqs_3857 42242a0e8a4a349a013abb0ef8c12199 248 PIRSF PIRSF034653 1 248 2.6E-118 T 11-10-2018 IPR017031 Predicted S-adenosyl-L-methionine dependent methyltransferase, YjhP-type dqs_3706 d281b5335e75a33005be3b0f10431031 319 Pfam PF00294 pfkB family carbohydrate kinase 16 306 6.7E-41 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB dqs_3706 d281b5335e75a33005be3b0f10431031 319 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 10 316 3.6E-120 T 11-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 dqs_3706 d281b5335e75a33005be3b0f10431031 319 SUPERFAMILY SSF53613 16 312 3.59E-53 T 11-10-2018 IPR029056 Ribokinase-like dqs_3706 d281b5335e75a33005be3b0f10431031 319 Gene3D G3DSA:3.40.1190.20 6 313 9.3E-109 T 11-10-2018 IPR029056 Ribokinase-like dqs_0398 447354f0e45eb9cda65780bbc414cb50 293 Gene3D G3DSA:3.40.50.1980 37 162 1.6E-18 T 11-10-2018 dqs_0398 447354f0e45eb9cda65780bbc414cb50 293 SUPERFAMILY SSF53807 46 285 5.49E-38 T 11-10-2018 dqs_0398 447354f0e45eb9cda65780bbc414cb50 293 Pfam PF01497 Periplasmic binding protein 47 242 1.6E-12 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain dqs_0398 447354f0e45eb9cda65780bbc414cb50 293 Gene3D G3DSA:3.40.50.1980 167 287 2.0E-10 T 11-10-2018 dqs_0676 6519e3f7a25f19c87abf4874cc4e2d93 732 SUPERFAMILY SSF56935 46 732 6.26E-111 T 11-10-2018 dqs_0676 6519e3f7a25f19c87abf4874cc4e2d93 732 Gene3D G3DSA:2.40.170.20 197 732 1.1E-93 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily dqs_0676 6519e3f7a25f19c87abf4874cc4e2d93 732 Gene3D G3DSA:2.170.130.10 68 192 1.9E-35 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily dqs_0676 6519e3f7a25f19c87abf4874cc4e2d93 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 87 732 1.6E-70 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 dqs_0676 6519e3f7a25f19c87abf4874cc4e2d93 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 86 183 1.4E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain dqs_0676 6519e3f7a25f19c87abf4874cc4e2d93 732 Pfam PF00593 TonB dependent receptor 262 729 9.0E-46 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel dqs_0566 0a80452a3a92b64ea8ccef1996843d61 95 Gene3D G3DSA:3.30.70.20 21 91 1.1E-13 T 11-10-2018 dqs_0566 0a80452a3a92b64ea8ccef1996843d61 95 SUPERFAMILY SSF54862 11 90 3.07E-16 T 11-10-2018 dqs_0566 0a80452a3a92b64ea8ccef1996843d61 95 Pfam PF14697 4Fe-4S dicluster domain 23 85 1.2E-10 T 11-10-2018 dqs_0566 0a80452a3a92b64ea8ccef1996843d61 95 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 6 89 1.4E-33 T 11-10-2018 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific dqs_0566 0a80452a3a92b64ea8ccef1996843d61 95 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 71 82 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site dqs_3507 1cc3126ea156d406b54e236213d82ea5 108 SUPERFAMILY SSF52833 4 102 1.23E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3507 1cc3126ea156d406b54e236213d82ea5 108 Gene3D G3DSA:3.40.30.10 4 107 3.2E-31 T 11-10-2018 dqs_3632 1a69368052539c512bf0321d2fa46c7d 213 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 13 200 27.996 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 dqs_3632 1a69368052539c512bf0321d2fa46c7d 213 SUPERFAMILY SSF53448 15 197 5.18E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_3632 1a69368052539c512bf0321d2fa46c7d 213 Pfam PF12804 MobA-like NTP transferase domain 17 169 2.7E-35 T 11-10-2018 IPR025877 MobA-like NTP transferase dqs_3632 1a69368052539c512bf0321d2fa46c7d 213 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 15 198 2.3E-70 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 dqs_3632 1a69368052539c512bf0321d2fa46c7d 213 Gene3D G3DSA:3.90.550.10 11 205 7.6E-56 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0749 1131c7860bb3018f1226f04f2a6c0c3e 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 259 9.3E-49 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_0749 1131c7860bb3018f1226f04f2a6c0c3e 260 Gene3D G3DSA:3.90.226.10 1 204 2.3E-62 T 11-10-2018 dqs_0749 1131c7860bb3018f1226f04f2a6c0c3e 260 Gene3D G3DSA:1.10.12.10 205 260 6.2E-26 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal dqs_0749 1131c7860bb3018f1226f04f2a6c0c3e 260 SUPERFAMILY SSF52096 3 260 1.61E-72 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0185 8d5cef6135672e2599a1b79b2bb55d0f 173 PIRSF PIRSF018472 7 166 1.1E-39 T 11-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type dqs_0185 8d5cef6135672e2599a1b79b2bb55d0f 173 Pfam PF04093 rod shape-determining protein MreD 9 157 4.0E-15 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 dqs_0185 8d5cef6135672e2599a1b79b2bb55d0f 173 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 16 158 1.8E-29 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 dqs_2418 5a898034ba7933064c49e22669c74ab3 172 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 36 166 9.0E-27 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ dqs_0025 af512f50f5f78bae49faa10bcd7cdc1a 176 Pfam PF03473 MOSC domain 57 168 1.5E-9 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 dqs_0025 af512f50f5f78bae49faa10bcd7cdc1a 176 SUPERFAMILY SSF50800 17 170 2.72E-33 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily dqs_0025 af512f50f5f78bae49faa10bcd7cdc1a 176 Gene3D G3DSA:2.40.33.20 21 174 2.3E-22 T 11-10-2018 dqs_4007 a3d5ade6094b82969443ee482aba010e 553 Pfam PF13538 UvrD-like helicase C-terminal domain 495 540 2.0E-11 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain dqs_4007 a3d5ade6094b82969443ee482aba010e 553 SUPERFAMILY SSF52540 220 544 8.87E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_4007 a3d5ade6094b82969443ee482aba010e 553 Gene3D G3DSA:3.40.50.300 211 369 4.6E-14 T 11-10-2018 dqs_0238 b212edfacba31955b50add1a2f567948 405 Gene3D G3DSA:1.20.1600.10 26 404 4.5E-37 T 11-10-2018 dqs_0238 b212edfacba31955b50add1a2f567948 405 Pfam PF02321 Outer membrane efflux protein 232 402 9.2E-9 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0238 b212edfacba31955b50add1a2f567948 405 Pfam PF02321 Outer membrane efflux protein 73 206 1.5E-7 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0238 b212edfacba31955b50add1a2f567948 405 SUPERFAMILY SSF56954 3 404 3.4E-37 T 11-10-2018 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 SUPERFAMILY SSF53067 154 339 5.86E-49 T 11-10-2018 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 SUPERFAMILY SSF53067 9 153 3.7E-39 T 11-10-2018 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 Gene3D G3DSA:3.30.420.40 159 322 1.6E-130 T 11-10-2018 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 Pfam PF06723 MreB/Mbl protein 10 340 5.5E-149 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 Gene3D G3DSA:3.30.420.40 13 331 1.6E-130 T 11-10-2018 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 192 212 8.5E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 8.5E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 53 71 8.5E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 137 156 8.5E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 73 96 8.5E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 Gene3D G3DSA:3.90.640.10 191 264 1.6E-130 T 11-10-2018 dqs_0183 f170b3f9abb1ac70dda0ee3cbc80449a 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 340 2.4E-157 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 dqs_1774 dcfc14806cc3eb52e970ecff196f0671 190 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 54 76 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 dqs_1774 dcfc14806cc3eb52e970ecff196f0671 190 PIRSF PIRSF000847 1 190 2.8E-45 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 dqs_1774 dcfc14806cc3eb52e970ecff196f0671 190 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 76 8.8E-17 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 dqs_1774 dcfc14806cc3eb52e970ecff196f0671 190 Gene3D G3DSA:1.20.120.1760 4 178 5.2E-14 T 11-10-2018 dqs_1774 dcfc14806cc3eb52e970ecff196f0671 190 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 181 4.8E-53 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 dqs_4054 d75fa0eba00fdb975855485a4407fade 289 Pfam PF04773 FecR protein 59 145 2.1E-5 T 11-10-2018 IPR006860 FecR protein dqs_1655 acd5bcf568be398ed5cef823b341e92d 93 SUPERFAMILY SSF54427 1 92 1.06E-30 T 11-10-2018 IPR032710 NTF2-like domain superfamily dqs_1655 acd5bcf568be398ed5cef823b341e92d 93 Gene3D G3DSA:3.10.450.50 1 93 1.3E-26 T 11-10-2018 dqs_1045 450d1f559cc38e26aa7273dbfabcb62c 296 Pfam PF02653 Branched-chain amino acid transport system / permease component 13 277 3.4E-31 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_3596 8429f5cb4d9428120fa740cf65ff0cba 128 SMART SM00448 6 119 1.2E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3596 8429f5cb4d9428120fa740cf65ff0cba 128 Gene3D G3DSA:3.40.50.12740 5 127 2.1E-38 T 11-10-2018 dqs_3596 8429f5cb4d9428120fa740cf65ff0cba 128 Pfam PF00072 Response regulator receiver domain 8 119 3.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 dqs_3596 8429f5cb4d9428120fa740cf65ff0cba 128 SUPERFAMILY SSF52172 3 125 6.97E-37 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0551 73a02d05aaf5e15acbd6943c12960a21 70 SUPERFAMILY SSF159203 1 66 3.92E-20 T 11-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily dqs_0551 73a02d05aaf5e15acbd6943c12960a21 70 Pfam PF06988 NifT/FixU protein 1 63 4.3E-24 T 11-10-2018 IPR009727 NifT/FixU GO:0009399 dqs_0551 73a02d05aaf5e15acbd6943c12960a21 70 Gene3D G3DSA:2.40.50.240 1 66 2.6E-24 T 11-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily dqs_0551 73a02d05aaf5e15acbd6943c12960a21 70 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 1 66 6.5E-20 T 11-10-2018 IPR009727 NifT/FixU GO:0009399 dqs_1634 3f2621c98f9dfbbe3620c8282efcc15c 181 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 21 171 6.1E-43 T 11-10-2018 IPR018639 Domain of unknown function DUF2062 dqs_1415 540eb24327b00c1ad19d62c16708f076 285 Gene3D G3DSA:3.60.110.10 17 279 5.7E-87 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily dqs_1415 540eb24327b00c1ad19d62c16708f076 285 SUPERFAMILY SSF56317 15 278 4.06E-78 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily dqs_1415 540eb24327b00c1ad19d62c16708f076 285 Pfam PF00795 Carbon-nitrogen hydrolase 18 269 3.8E-51 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 dqs_1415 540eb24327b00c1ad19d62c16708f076 285 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 165 185 - T 11-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site dqs_1332 95e877a75830fdcb1825f4f5978f450e 298 SUPERFAMILY SSF81345 20 281 4.45E-22 T 11-10-2018 IPR037294 ABC transporter, BtuC-like dqs_1332 95e877a75830fdcb1825f4f5978f450e 298 Pfam PF00950 ABC 3 transport family 19 283 1.0E-51 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 dqs_1332 95e877a75830fdcb1825f4f5978f450e 298 Gene3D G3DSA:1.10.3470.10 48 286 5.1E-6 T 11-10-2018 IPR037294 ABC transporter, BtuC-like dqs_1332 95e877a75830fdcb1825f4f5978f450e 298 PRINTS PR00173 Glutamate-aspartate symporter signature 11 33 1.3E-6 T 11-10-2018 dqs_1332 95e877a75830fdcb1825f4f5978f450e 298 PRINTS PR00173 Glutamate-aspartate symporter signature 200 220 1.3E-6 T 11-10-2018 dqs_1332 95e877a75830fdcb1825f4f5978f450e 298 PRINTS PR00173 Glutamate-aspartate symporter signature 139 165 1.3E-6 T 11-10-2018 dqs_0376 71f93a1406724082364fc7c5f3945cfb 361 Pfam PF04892 VanZ like family 26 128 1.6E-8 T 11-10-2018 IPR006976 VanZ-like dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 5 127 1.4E-38 T 11-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 PIRSF PIRSF000161 3 269 6.4E-81 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 152 169 - T 11-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 267 1.3E-95 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 Gene3D G3DSA:3.30.360.10 129 236 2.7E-97 T 11-10-2018 dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 SUPERFAMILY SSF51735 4 268 3.04E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 SUPERFAMILY SSF55347 129 238 6.76E-36 T 11-10-2018 dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 6.0E-40 T 11-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 Gene3D G3DSA:3.40.50.720 6 265 2.7E-97 T 11-10-2018 dqs_2737 e5290ff90bead5035125a4fbfb3da00a 269 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 267 34.062 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 PRINTS PR00184 Neisseria sp. porin signature 59 84 9.6E-15 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 PRINTS PR00184 Neisseria sp. porin signature 94 113 9.6E-15 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 PRINTS PR00184 Neisseria sp. porin signature 315 339 9.6E-15 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 PRINTS PR00184 Neisseria sp. porin signature 150 167 9.6E-15 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 3.4E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 3.4E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 318 335 3.4E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 57 68 3.4E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 Gene3D G3DSA:2.40.160.10 21 374 3.2E-70 T 11-10-2018 IPR023614 Porin domain superfamily dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 Pfam PF13609 Gram-negative porin 7 343 1.7E-50 T 11-10-2018 dqs_3153 07cd611353480e0786b8dd6ee15f51bc 374 SUPERFAMILY SSF56935 21 374 3.36E-56 T 11-10-2018 dqs_3626 5217d128f50c380502d843f5defd27a4 68 PIRSF PIRSF036704 1 68 2.7E-15 T 11-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing dqs_2716 121608cb81056ade0ada6a30d05e0658 703 Gene3D G3DSA:1.10.287.470 479 538 3.0E-10 T 11-10-2018 dqs_2716 121608cb81056ade0ada6a30d05e0658 703 Gene3D G3DSA:2.40.30.170 434 623 3.0E-10 T 11-10-2018 dqs_2716 121608cb81056ade0ada6a30d05e0658 703 Gene3D G3DSA:2.40.50.100 445 575 3.0E-10 T 11-10-2018 dqs_3011 2e89d0a0aaf408b0c77dd9f5109c8b3c 430 Pfam PF11902 Protein of unknown function (DUF3422) 6 421 3.6E-168 T 11-10-2018 IPR021830 Protein of unknown function DUF3422 dqs_2445 814bfe8303bc973f5c331a6868bac1ff 220 Pfam PF13350 Tyrosine phosphatase family 58 148 3.6E-5 T 11-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type dqs_2445 814bfe8303bc973f5c331a6868bac1ff 220 SUPERFAMILY SSF52799 30 172 1.97E-23 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like dqs_2445 814bfe8303bc973f5c331a6868bac1ff 220 Gene3D G3DSA:3.90.190.10 26 169 8.9E-25 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like dqs_1715 25ba404f8de2920cc992763dec50315f 105 Pfam PF16290 Domain of unknown function (DUF4936) 15 102 7.6E-29 T 11-10-2018 IPR032556 Protein of unknown function DUF4936 dqs_2541 eaa58280cee785a489344d740cae192d 274 Gene3D G3DSA:3.20.20.450 32 268 1.4E-15 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2541 eaa58280cee785a489344d740cae192d 274 SUPERFAMILY SSF141868 37 253 4.45E-18 T 11-10-2018 IPR035919 EAL domain superfamily dqs_2541 eaa58280cee785a489344d740cae192d 274 SMART SM00052 14 262 0.0076 T 11-10-2018 IPR001633 EAL domain dqs_2541 eaa58280cee785a489344d740cae192d 274 Pfam PF00563 EAL domain 38 253 7.6E-16 T 11-10-2018 IPR001633 EAL domain dqs_3194 931cc477f8678b256edb552ed3400d4c 193 Gene3D G3DSA:1.20.120.520 2 160 1.4E-31 T 11-10-2018 dqs_3194 931cc477f8678b256edb552ed3400d4c 193 Pfam PF01814 Hemerythrin HHE cation binding domain 6 140 5.0E-16 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 dqs_2671 b3150c8eac3843632179800272ac0046 105 Pfam PF00355 Rieske [2Fe-2S] domain 6 92 2.6E-19 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_2671 b3150c8eac3843632179800272ac0046 105 SUPERFAMILY SSF50022 5 104 2.49E-31 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2671 b3150c8eac3843632179800272ac0046 105 Gene3D G3DSA:2.102.10.10 2 105 1.5E-35 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_0986 e8c1c4586c3072335e9cddd7a67c7878 320 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 6 311 1.1E-121 T 11-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 dqs_0986 e8c1c4586c3072335e9cddd7a67c7878 320 Pfam PF03741 Integral membrane protein TerC family 81 282 5.3E-55 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 dqs_3081 821b5527fee83dd2fdd9fefb0b5bf907 227 Gene3D G3DSA:1.20.1510.10 20 202 1.0E-10 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily dqs_3081 821b5527fee83dd2fdd9fefb0b5bf907 227 Pfam PF01545 Cation efflux family 24 202 4.1E-12 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 dqs_3081 821b5527fee83dd2fdd9fefb0b5bf907 227 SUPERFAMILY SSF161111 19 204 4.32E-36 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily dqs_2213 cc888691c0332ad1957015bf311333ff 408 Gene3D G3DSA:1.20.1250.20 9 197 1.6E-32 T 11-10-2018 dqs_2213 cc888691c0332ad1957015bf311333ff 408 SUPERFAMILY SSF103473 9 391 1.96E-50 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_2213 cc888691c0332ad1957015bf311333ff 408 Gene3D G3DSA:1.20.1250.20 204 394 9.3E-12 T 11-10-2018 dqs_2213 cc888691c0332ad1957015bf311333ff 408 Pfam PF07690 Major Facilitator Superfamily 18 355 1.3E-31 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 64 310 5.9E-39 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 248 265 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 57 405 2.6E-14 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 SUPERFAMILY SSF50621 289 427 7.74E-34 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 Gene3D G3DSA:2.40.37.10 53 427 1.2E-103 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 SUPERFAMILY SSF51419 53 312 9.0E-67 T 11-10-2018 IPR029066 PLP-binding barrel dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 83 101 6.0E-10 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 213 226 6.0E-10 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 300 319 6.0E-10 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 103 115 6.0E-10 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 Gene3D G3DSA:3.20.20.10 61 312 1.2E-103 T 11-10-2018 IPR029066 PLP-binding barrel dqs_3385 1403bc9cfe7620873d312c34b52cc175 427 TIGRFAM TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated 31 427 7.1E-194 T 11-10-2018 IPR017530 Pyridoxal-dependent decarboxylase, exosortase system type 1 associated dqs_0176 313702aaf40780d7be0c181544941136 138 Gene3D G3DSA:3.30.428.10 10 137 2.0E-37 T 11-10-2018 IPR036265 HIT-like superfamily dqs_0176 313702aaf40780d7be0c181544941136 138 SUPERFAMILY SSF54197 3 135 1.31E-36 T 11-10-2018 IPR036265 HIT-like superfamily dqs_0176 313702aaf40780d7be0c181544941136 138 Pfam PF01230 HIT domain 13 98 1.7E-16 T 11-10-2018 IPR001310 Histidine triad (HIT) protein dqs_0176 313702aaf40780d7be0c181544941136 138 PIRSF PIRSF000714 2 135 9.7E-42 T 11-10-2018 IPR026026 Histidine triad hydrolase, Hint-type dqs_0148 8d5f6ccdffe58c33c478b6a3e87ec937 282 SUPERFAMILY SSF56300 4 242 9.01E-40 T 11-10-2018 dqs_0148 8d5f6ccdffe58c33c478b6a3e87ec937 282 Pfam PF00149 Calcineurin-like phosphoesterase 4 195 3.3E-12 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 dqs_0148 8d5f6ccdffe58c33c478b6a3e87ec937 282 Gene3D G3DSA:3.60.21.10 1 265 9.6E-25 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like dqs_2585 f5ffef47a3572c50e623b8e7a04505b7 517 Gene3D G3DSA:1.10.620.20 3 517 2.0E-214 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 dqs_2585 f5ffef47a3572c50e623b8e7a04505b7 517 Pfam PF04945 YHS domain 411 453 1.8E-16 T 11-10-2018 IPR007029 YHS domain dqs_2585 f5ffef47a3572c50e623b8e7a04505b7 517 SUPERFAMILY SSF47240 5 515 2.12E-167 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_2585 f5ffef47a3572c50e623b8e7a04505b7 517 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 25 253 5.2E-74 T 11-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 dqs_0465 6c815a513548c3229859a4022426a392 211 PIRSF PIRSF006324 1 209 1.2E-53 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 dqs_0465 6c815a513548c3229859a4022426a392 211 Pfam PF01810 LysE type translocator 17 207 3.6E-33 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 dqs_2389 34e0228b9f63543dc49484b205ddc561 200 Gene3D G3DSA:3.40.30.10 45 183 4.4E-16 T 11-10-2018 dqs_2389 34e0228b9f63543dc49484b205ddc561 200 TIGRFAM TIGR02661 MauD: methylamine dehydrogenase accessory protein MauD 5 194 2.6E-61 T 11-10-2018 IPR013478 Methylamine dehydrogenase accessory protein MauD GO:0030416 dqs_2389 34e0228b9f63543dc49484b205ddc561 200 Pfam PF00578 AhpC/TSA family 51 166 1.7E-5 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 dqs_2389 34e0228b9f63543dc49484b205ddc561 200 SUPERFAMILY SSF52833 46 171 9.43E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3140 6b5f3949c3a0810a73e6cb955dda1431 394 Gene3D G3DSA:3.50.50.60 5 362 7.5E-93 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3140 6b5f3949c3a0810a73e6cb955dda1431 394 Pfam PF01266 FAD dependent oxidoreductase 5 359 9.4E-56 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_3140 6b5f3949c3a0810a73e6cb955dda1431 394 SUPERFAMILY SSF51905 4 385 7.12E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_3140 6b5f3949c3a0810a73e6cb955dda1431 394 Gene3D G3DSA:3.30.9.10 88 323 7.5E-93 T 11-10-2018 dqs_0992 66432e6d2747cdc2b9eeaaecc99be432 234 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 22 175 3.3E-22 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ dqs_2192 7f707928a91c5b5403c6e14a7e4f196d 434 Pfam PF01554 MatE 2 158 5.1E-24 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 dqs_2192 7f707928a91c5b5403c6e14a7e4f196d 434 Pfam PF01554 MatE 225 386 5.3E-26 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 dqs_2192 7f707928a91c5b5403c6e14a7e4f196d 434 TIGRFAM TIGR00797 matE: MATE efflux family protein 2 391 1.6E-68 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 dqs_2097 b693130c541b75ec62543db48a621d5b 200 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 63 179 4.6E-11 T 11-10-2018 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 dqs_0927 25428da68cd9823c0e8777f9e5e171d6 406 Gene3D G3DSA:3.40.50.2000 224 379 9.0E-31 T 11-10-2018 dqs_0927 25428da68cd9823c0e8777f9e5e171d6 406 SUPERFAMILY SSF53756 18 392 1.28E-79 T 11-10-2018 dqs_0927 25428da68cd9823c0e8777f9e5e171d6 406 Gene3D G3DSA:3.40.50.2000 14 223 7.2E-31 T 11-10-2018 dqs_0927 25428da68cd9823c0e8777f9e5e171d6 406 Pfam PF13692 Glycosyl transferases group 1 221 352 1.2E-28 T 11-10-2018 dqs_0927 25428da68cd9823c0e8777f9e5e171d6 406 Pfam PF13439 Glycosyltransferase Family 4 30 198 3.6E-26 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 dqs_2038 0df73d9591d3a605239c56014f11b3d3 281 SUPERFAMILY SSF48576 4 278 1.58E-72 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily dqs_2038 0df73d9591d3a605239c56014f11b3d3 281 Pfam PF00494 Squalene/phytoene synthase 5 265 1.5E-64 T 11-10-2018 dqs_2038 0df73d9591d3a605239c56014f11b3d3 281 TIGRFAM TIGR03464 HpnC: squalene synthase HpnC 2 275 2.0E-113 T 11-10-2018 IPR017827 Hydroxysqualene synthase HpnC MetaCyc: PWY-7072 dqs_2038 0df73d9591d3a605239c56014f11b3d3 281 Gene3D G3DSA:1.10.600.10 2 256 5.9E-83 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily dqs_1841 8efcf0b0a52e22fd35c8f0e3c1d0ed4c 365 Pfam PF02405 Permease MlaE 148 356 4.8E-65 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 dqs_1841 8efcf0b0a52e22fd35c8f0e3c1d0ed4c 365 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 122 356 1.3E-63 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria dqs_2537 ac03ac2ac991ea243594534de652800e 270 Gene3D G3DSA:1.10.3720.10 64 264 2.0E-20 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2537 ac03ac2ac991ea243594534de652800e 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 261 4.6E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_2537 ac03ac2ac991ea243594534de652800e 270 SUPERFAMILY SSF161098 73 253 1.03E-23 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2329 78c77e8c893e33cee0e9160d5d781a37 269 SUPERFAMILY SSF56300 5 244 8.23E-33 T 11-10-2018 dqs_2329 78c77e8c893e33cee0e9160d5d781a37 269 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 8 222 8.2E-12 T 11-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 dqs_2329 78c77e8c893e33cee0e9160d5d781a37 269 Gene3D G3DSA:3.60.21.10 4 241 1.3E-18 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like dqs_1724 4b1fd203dd109693412ba08458a0b5e5 305 SUPERFAMILY SSF52768 4 279 4.65E-83 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily dqs_1724 4b1fd203dd109693412ba08458a0b5e5 305 Pfam PF00850 Histone deacetylase domain 21 278 9.1E-50 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1724 4b1fd203dd109693412ba08458a0b5e5 305 PRINTS PR01270 Histone deacetylase superfamily signature 149 164 4.9E-14 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1724 4b1fd203dd109693412ba08458a0b5e5 305 PRINTS PR01270 Histone deacetylase superfamily signature 223 233 4.9E-14 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1724 4b1fd203dd109693412ba08458a0b5e5 305 PRINTS PR01270 Histone deacetylase superfamily signature 115 138 4.9E-14 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_1724 4b1fd203dd109693412ba08458a0b5e5 305 Gene3D G3DSA:3.40.800.20 3 294 4.5E-70 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 dqs_2762 e2a702b44060ca60229ff6ed356d6c3b 102 Pfam PF00355 Rieske [2Fe-2S] domain 4 88 8.0E-15 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 dqs_2762 e2a702b44060ca60229ff6ed356d6c3b 102 Gene3D G3DSA:2.102.10.10 2 102 7.4E-26 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_2762 e2a702b44060ca60229ff6ed356d6c3b 102 SUPERFAMILY SSF50022 1 101 4.19E-28 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 dqs_3849 a5341402cdaf09e36978dd641ceb9720 222 Pfam PF05875 Ceramidase 16 205 5.4E-12 T 11-10-2018 IPR008901 Ceramidase GO:0006672|GO:0016021|GO:0016811 Reactome: R-HSA-1660661 dqs_3486 8c06a806fe70a8ada3aa8e161c506ff8 244 SUPERFAMILY SSF53955 113 232 1.44E-24 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_3486 8c06a806fe70a8ada3aa8e161c506ff8 244 Gene3D G3DSA:1.10.530.10 107 233 4.3E-24 T 11-10-2018 dqs_3486 8c06a806fe70a8ada3aa8e161c506ff8 244 Pfam PF01464 Transglycosylase SLT domain 122 210 1.1E-18 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 dqs_0118 5ed36f3418c8ef7a57be24932dce9ba2 401 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 60 163 5.7E-5 T 11-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 dqs_0118 5ed36f3418c8ef7a57be24932dce9ba2 401 SUPERFAMILY SSF51445 35 288 6.6E-33 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_0118 5ed36f3418c8ef7a57be24932dce9ba2 401 Gene3D G3DSA:3.20.20.80 23 296 3.1E-28 T 11-10-2018 dqs_4001 7b03ffd1c16ce15e1559832258a5b3b0 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 248 5.4E-32 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 dqs_4001 7b03ffd1c16ce15e1559832258a5b3b0 285 SUPERFAMILY SSF52096 5 256 6.28E-56 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_4001 7b03ffd1c16ce15e1559832258a5b3b0 285 Gene3D G3DSA:3.90.226.10 1 280 1.7E-77 T 11-10-2018 dqs_4116 0049c1ac1ddc5595f847a6a17b183171 267 Gene3D G3DSA:1.10.530.70 103 256 1.7E-9 T 11-10-2018 dqs_4116 0049c1ac1ddc5595f847a6a17b183171 267 Pfam PF01471 Putative peptidoglycan binding domain 9 65 4.5E-15 T 11-10-2018 IPR002477 Peptidoglycan binding-like dqs_4116 0049c1ac1ddc5595f847a6a17b183171 267 SUPERFAMILY SSF47090 3 69 9.94E-19 T 11-10-2018 IPR036365 PGBD-like superfamily dqs_4116 0049c1ac1ddc5595f847a6a17b183171 267 Gene3D G3DSA:1.10.101.10 1 69 9.9E-20 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 dqs_4116 0049c1ac1ddc5595f847a6a17b183171 267 SUPERFAMILY SSF53955 103 256 2.14E-16 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_3509 f2d3390fab149404dbc75124aa024a90 200 Gene3D G3DSA:3.40.50.360 2 200 9.6E-60 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_3509 f2d3390fab149404dbc75124aa024a90 200 SUPERFAMILY SSF52218 1 197 2.74E-57 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_3509 f2d3390fab149404dbc75124aa024a90 200 Pfam PF02525 Flavodoxin-like fold 1 196 2.0E-48 T 11-10-2018 IPR003680 Flavodoxin-like fold dqs_3509 f2d3390fab149404dbc75124aa024a90 200 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 198 31.342 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 dqs_2310 1f10c272ce81816cf15989a2898e5965 342 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_2310 1f10c272ce81816cf15989a2898e5965 342 Pfam PF16074 Type IV Pilus-assembly protein W 219 332 1.1E-25 T 11-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 dqs_2310 1f10c272ce81816cf15989a2898e5965 342 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 33 1.3E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3394 58eae9d0a805a54db4f73a45f0d30b1d 347 Pfam PF04230 Polysaccharide pyruvyl transferase 37 296 9.4E-27 T 11-10-2018 IPR007345 Polysaccharide pyruvyl transferase dqs_1457 58a86e21d978c79b6f812f27252b8b2b 336 Pfam PF13531 Bacterial extracellular solute-binding protein 38 286 2.2E-41 T 11-10-2018 dqs_1457 58a86e21d978c79b6f812f27252b8b2b 336 SUPERFAMILY SSF53850 27 332 3.32E-81 T 11-10-2018 dqs_1457 58a86e21d978c79b6f812f27252b8b2b 336 Gene3D G3DSA:3.40.190.10 121 331 1.2E-120 T 11-10-2018 dqs_1457 58a86e21d978c79b6f812f27252b8b2b 336 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 20 332 2.4E-124 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 dqs_1457 58a86e21d978c79b6f812f27252b8b2b 336 Gene3D G3DSA:3.40.190.10 33 301 1.2E-120 T 11-10-2018 dqs_0256 c84b359edebf006c85502aa8414c8e99 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 3.7E-94 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit dqs_0256 c84b359edebf006c85502aa8414c8e99 427 PIRSF PIRSF006066 1 427 2.4E-121 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_0256 c84b359edebf006c85502aa8414c8e99 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 2.0E-107 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 dqs_3837 affc1af788c9bd93e3432ad713c403d1 188 Pfam PF13420 Acetyltransferase (GNAT) domain 20 174 2.9E-22 T 11-10-2018 dqs_3837 affc1af788c9bd93e3432ad713c403d1 188 SUPERFAMILY SSF55729 20 181 3.49E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_3837 affc1af788c9bd93e3432ad713c403d1 188 Gene3D G3DSA:3.40.630.30 15 188 1.2E-51 T 11-10-2018 dqs_3197 d5816695c83eb262c79cb42e38632356 312 SUPERFAMILY SSF103481 55 157 5.36E-9 T 11-10-2018 dqs_3197 d5816695c83eb262c79cb42e38632356 312 SUPERFAMILY SSF103481 209 311 7.59E-12 T 11-10-2018 dqs_3197 d5816695c83eb262c79cb42e38632356 312 Pfam PF00892 EamA-like transporter family 169 306 4.0E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_3197 d5816695c83eb262c79cb42e38632356 312 Pfam PF00892 EamA-like transporter family 23 155 5.1E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_3244 ba604dab14f4e19f98a0e4eb3c14a01d 644 TIGRFAM TIGR04244 nitrous_NosZ_RR: nitrous-oxide reductase, TAT-dependent 15 643 6.6E-300 T 11-10-2018 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084 dqs_3244 ba604dab14f4e19f98a0e4eb3c14a01d 644 SUPERFAMILY SSF49503 511 643 6.98E-29 T 11-10-2018 IPR008972 Cupredoxin dqs_3244 ba604dab14f4e19f98a0e4eb3c14a01d 644 Gene3D G3DSA:2.60.40.420 533 644 1.5E-32 T 11-10-2018 IPR008972 Cupredoxin dqs_3244 ba604dab14f4e19f98a0e4eb3c14a01d 644 SUPERFAMILY SSF50974 66 520 7.19E-116 T 11-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 dqs_3244 ba604dab14f4e19f98a0e4eb3c14a01d 644 Pfam PF13473 Cupredoxin-like domain 550 628 6.5E-8 T 11-10-2018 IPR028096 EfeO-type cupredoxin-like domain dqs_3244 ba604dab14f4e19f98a0e4eb3c14a01d 644 Gene3D G3DSA:2.130.10.10 63 532 6.1E-183 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 dqs_0423 3b91fd4a03983b49e80e4c0791170f3a 363 Pfam PF04143 Sulphur transport 27 350 1.3E-61 T 11-10-2018 IPR007272 Sulphur transport domain dqs_0034 0af5740ed2e5a79c2abdc885de1b2067 188 Gene3D G3DSA:3.90.550.10 1 188 3.4E-41 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0034 0af5740ed2e5a79c2abdc885de1b2067 188 SUPERFAMILY SSF53448 1 186 9.46E-25 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0034 0af5740ed2e5a79c2abdc885de1b2067 188 Pfam PF12804 MobA-like NTP transferase domain 3 164 6.7E-33 T 11-10-2018 IPR025877 MobA-like NTP transferase dqs_2876 bba9dbdbb8646fc012e86a4580f4b70c 256 Pfam PF13144 Chaperone for flagella basal body P-ring formation 57 254 2.4E-51 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal dqs_2876 bba9dbdbb8646fc012e86a4580f4b70c 256 Gene3D G3DSA:2.30.30.760 198 255 6.7E-19 T 11-10-2018 dqs_2876 bba9dbdbb8646fc012e86a4580f4b70c 256 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 120 254 1.5E-38 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal dqs_2876 bba9dbdbb8646fc012e86a4580f4b70c 256 SMART SM00858 132 194 2.0E-11 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 dqs_1901 23fa4929f1f6846619c0faeb28bd91d0 117 Pfam PF04972 BON domain 47 111 7.9E-12 T 11-10-2018 IPR007055 BON domain dqs_1879 8eaba6c5e74f6ddb09f56dc2f13759ab 386 SUPERFAMILY SSF47240 243 305 6.87E-9 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_1879 8eaba6c5e74f6ddb09f56dc2f13759ab 386 SUPERFAMILY SSF47240 92 240 8.61E-19 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_1290 ae18fad106fc604d351eb20e2b90441e 270 Gene3D G3DSA:1.20.1080.10 1 249 1.7E-66 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 dqs_1290 ae18fad106fc604d351eb20e2b90441e 270 Pfam PF01226 Formate/nitrite transporter 8 257 4.5E-63 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 dqs_0059 481944df317d556b63880012a3ec7992 571 Pfam PF10062 Predicted secreted protein (DUF2300) 432 551 5.5E-36 T 11-10-2018 IPR018748 Domain of unknown function DUF2300, secreted dqs_0059 481944df317d556b63880012a3ec7992 571 Pfam PF10062 Predicted secreted protein (DUF2300) 104 222 7.8E-18 T 11-10-2018 IPR018748 Domain of unknown function DUF2300, secreted dqs_0059 481944df317d556b63880012a3ec7992 571 Pfam PF08486 Stage II sporulation protein 339 393 2.3E-4 T 11-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal dqs_0295 886cfe202814e9787ee820766979f832 251 Pfam PF11445 Protein of unknown function (DUF2894) 20 224 7.1E-60 T 11-10-2018 IPR021549 Protein of unknown function DUF2894 dqs_2478 2077a0e6ecb872caae1eae6102efd45a 159 Gene3D G3DSA:3.40.250.10 46 135 2.7E-11 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2478 2077a0e6ecb872caae1eae6102efd45a 159 SUPERFAMILY SSF52821 29 125 3.74E-12 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily dqs_2922 68e29438e988786aecc3e84f15dfac17 471 Pfam PF02646 RmuC family 142 438 1.7E-104 T 11-10-2018 IPR003798 DNA recombination RmuC dqs_1419 45350ddfda4fcea1945bab51d7a0a07c 448 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 6 447 2.8E-130 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 dqs_1419 45350ddfda4fcea1945bab51d7a0a07c 448 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 446 3.0E-128 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 dqs_1608 5794a63eccccf3a5996a203d86ebc31e 198 Pfam PF06930 Protein of unknown function (DUF1282) 9 181 1.1E-45 T 11-10-2018 IPR009698 Protein of unknown function DUF1282 dqs_0646 4084d2a5b3ecd8c98a76667f94d87275 503 Gene3D G3DSA:3.40.50.300 8 137 5.1E-10 T 11-10-2018 dqs_0646 4084d2a5b3ecd8c98a76667f94d87275 503 SUPERFAMILY SSF52540 12 369 8.9E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_0646 4084d2a5b3ecd8c98a76667f94d87275 503 Pfam PF05872 Bacterial protein of unknown function (DUF853) 5 502 1.1E-240 T 11-10-2018 IPR033186 Helicase HerA-like C-terminal dqs_0646 4084d2a5b3ecd8c98a76667f94d87275 503 Gene3D G3DSA:3.40.50.300 201 368 3.4E-21 T 11-10-2018 dqs_3693 8d83b3de7d545a3419dd08b8b7a68215 431 Gene3D G3DSA:3.40.50.300 9 184 1.1E-15 T 11-10-2018 dqs_3693 8d83b3de7d545a3419dd08b8b7a68215 431 SUPERFAMILY SSF52317 239 428 1.38E-30 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3693 8d83b3de7d545a3419dd08b8b7a68215 431 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 11 181 2.7E-13 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_3693 8d83b3de7d545a3419dd08b8b7a68215 431 Gene3D G3DSA:3.40.50.880 248 403 1.8E-10 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like dqs_3693 8d83b3de7d545a3419dd08b8b7a68215 431 SUPERFAMILY SSF52540 9 193 2.55E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3693 8d83b3de7d545a3419dd08b8b7a68215 431 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 240 420 4.8E-28 T 11-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 dqs_4022 0a0899bc57677673b079f4260d8eea57 345 Gene3D G3DSA:3.40.47.10 103 220 1.4E-7 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_4022 0a0899bc57677673b079f4260d8eea57 345 SUPERFAMILY SSF53901 3 207 2.53E-11 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_4022 0a0899bc57677673b079f4260d8eea57 345 SUPERFAMILY SSF53901 188 344 2.65E-7 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 dqs_3812 193a6e857455665b48874aad633d4612 102 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 102 3.7E-32 T 11-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 dqs_3433 e19806af3edd983b9e8fec18b994f64b 347 Pfam PF02628 Cytochrome oxidase assembly protein 5 315 8.5E-75 T 11-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 dqs_4004 10dfe3329e4c8188a8320b3b35eb3ba0 359 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 5 359 3.6E-168 T 11-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 dqs_4004 10dfe3329e4c8188a8320b3b35eb3ba0 359 SUPERFAMILY SSF53659 3 359 4.22E-117 T 11-10-2018 dqs_4004 10dfe3329e4c8188a8320b3b35eb3ba0 359 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 355 2.4E-84 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 dqs_4004 10dfe3329e4c8188a8320b3b35eb3ba0 359 SMART SM01329 6 355 1.2E-181 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 dqs_4004 10dfe3329e4c8188a8320b3b35eb3ba0 359 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 dqs_4004 10dfe3329e4c8188a8320b3b35eb3ba0 359 Gene3D G3DSA:3.40.718.10 2 359 9.8E-146 T 11-10-2018 dqs_2979 e922125b107398bb665985e9d56dc2c4 136 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 53 92 1.5E-4 T 11-10-2018 IPR018660 C-type lysozyme inhibitor dqs_2769 74eb430eedd87ef0507ad3e5b9c13110 256 SMART SM01007 23 203 1.9E-57 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal dqs_2769 74eb430eedd87ef0507ad3e5b9c13110 256 SUPERFAMILY SSF53639 15 221 6.87E-61 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily dqs_2769 74eb430eedd87ef0507ad3e5b9c13110 256 Gene3D G3DSA:3.40.225.10 11 256 3.1E-65 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily dqs_2769 74eb430eedd87ef0507ad3e5b9c13110 256 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 24 203 1.3E-41 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal dqs_2134 a476c7947036bf221df740652082962a 258 SUPERFAMILY SSF102198 16 256 1.26E-53 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 dqs_2134 a476c7947036bf221df740652082962a 258 Pfam PF04199 Putative cyclase 19 195 4.1E-31 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 dqs_2134 a476c7947036bf221df740652082962a 258 Gene3D G3DSA:3.50.30.50 1 258 5.3E-89 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 dqs_3151 b69d7f06bf65301e8ba6706d2fd24b50 454 TIGRFAM TIGR00836 amt: ammonium transporter 48 452 2.1E-131 T 11-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 dqs_3151 b69d7f06bf65301e8ba6706d2fd24b50 454 SUPERFAMILY SSF111352 44 428 1.7E-121 T 11-10-2018 dqs_3151 b69d7f06bf65301e8ba6706d2fd24b50 454 Pfam PF00909 Ammonium Transporter Family 50 452 3.4E-114 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 dqs_3151 b69d7f06bf65301e8ba6706d2fd24b50 454 Gene3D G3DSA:1.10.3430.10 27 454 6.0E-134 T 11-10-2018 IPR029020 Ammonium/urea transporter dqs_0249 b733911dee177e98a57042397d2840f3 215 Gene3D G3DSA:3.30.2420.10 139 215 4.1E-6 T 11-10-2018 dqs_2963 95c7128467b2bff86f60a0f4c6974ae9 271 Pfam PF04305 Protein of unknown function (DUF455) 16 260 2.3E-92 T 11-10-2018 IPR007402 Protein of unknown function DUF455 dqs_2963 95c7128467b2bff86f60a0f4c6974ae9 271 PIRSF PIRSF012318 1 268 2.4E-93 T 11-10-2018 IPR011197 Uncharacterised conserved protein UCP012318 dqs_2963 95c7128467b2bff86f60a0f4c6974ae9 271 SUPERFAMILY SSF47240 74 219 7.3E-17 T 11-10-2018 IPR009078 Ferritin-like superfamily dqs_1604 270cacbbc247b0034ed5ada45b3f12be 312 Pfam PF05982 Na+-dependent bicarbonate transporter superfamily 6 306 3.6E-114 T 11-10-2018 IPR010293 Na+-dependent bicarbonate transporter superfamily dqs_0999 24d52bb32fb2dbfdcddba64f153d15c8 415 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 11 405 29.467 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 dqs_0999 24d52bb32fb2dbfdcddba64f153d15c8 415 Pfam PF04551 GcpE protein 16 403 1.4E-111 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 dqs_0999 24d52bb32fb2dbfdcddba64f153d15c8 415 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 13 402 1.1E-120 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 dqs_0999 24d52bb32fb2dbfdcddba64f153d15c8 415 Gene3D G3DSA:3.30.413.10 297 414 2.1E-35 T 11-10-2018 dqs_0999 24d52bb32fb2dbfdcddba64f153d15c8 415 PIRSF PIRSF004640 7 413 3.9E-131 T 11-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 dqs_0999 24d52bb32fb2dbfdcddba64f153d15c8 415 Gene3D G3DSA:3.20.20.20 10 296 8.8E-98 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 dqs_0320 6061cb05e40e01be7b229e0ad25979af 163 Pfam PF01883 Iron-sulfur cluster assembly protein 6 72 9.3E-16 T 11-10-2018 IPR002744 MIP18 family-like dqs_0320 6061cb05e40e01be7b229e0ad25979af 163 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 14 163 1.5E-61 T 11-10-2018 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit dqs_0320 6061cb05e40e01be7b229e0ad25979af 163 SUPERFAMILY SSF117916 1 97 5.56E-25 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily dqs_0320 6061cb05e40e01be7b229e0ad25979af 163 Gene3D G3DSA:3.30.300.130 2 98 1.8E-25 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily dqs_1029 276644bb1ef389c027ecffb8c955528d 302 Pfam PF02535 ZIP Zinc transporter 146 297 4.8E-15 T 11-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 dqs_2348 e210f0973b817e20055b4d8e59a826c6 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 337 3.0E-43 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_1616 6625870e07eea57042cebda78678febb 620 Pfam PF01435 Peptidase family M48 146 330 2.0E-14 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 dqs_0843 8d6d7fe5d56a121076092f918889ae4d 298 PIRSF PIRSF003097 5 297 4.2E-63 T 11-10-2018 IPR004513 Cell division protein FtsX GO:0016021 dqs_1816 3bf4134d51cf7e7fe1e24affc02e976a 191 Gene3D G3DSA:3.40.50.1110 9 190 1.7E-65 T 11-10-2018 IPR036514 SGNH hydrolase superfamily dqs_1816 3bf4134d51cf7e7fe1e24affc02e976a 191 SUPERFAMILY SSF52266 10 182 5.19E-48 T 11-10-2018 dqs_1816 3bf4134d51cf7e7fe1e24affc02e976a 191 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 15 175 5.4E-27 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain dqs_1709 11787ae3f84da2d852092234bb7ecdb8 167 Pfam PF11454 Protein of unknown function (DUF3016) 24 157 1.1E-41 T 11-10-2018 IPR021557 Protein of unknown function DUF3016 dqs_0244 771dbc7f24a1bf930675d295c928c1a1 248 SUPERFAMILY SSF49478 158 204 4.71E-6 T 11-10-2018 dqs_0244 771dbc7f24a1bf930675d295c928c1a1 248 Pfam PF10670 Domain of unknown function (DUF4198) 133 205 8.1E-12 T 11-10-2018 IPR019613 Protein of unknown function DUF4198 dqs_1097 999f5cc4d24c35a19f26c6569b6ee192 399 SUPERFAMILY SSF48452 295 388 4.74E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 dqs_1097 999f5cc4d24c35a19f26c6569b6ee192 399 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 2 387 6.1E-111 T 11-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 dqs_1097 999f5cc4d24c35a19f26c6569b6ee192 399 Pfam PF07219 HemY protein N-terminus 26 131 1.2E-32 T 11-10-2018 IPR010817 HemY, N-terminal dqs_3921 3bb6375dd5b3295f7e481ba02a5f2b19 164 Gene3D G3DSA:3.10.350.10 112 160 1.7E-14 T 11-10-2018 IPR036779 LysM domain superfamily dqs_3921 3bb6375dd5b3295f7e481ba02a5f2b19 164 SUPERFAMILY SSF54106 111 161 3.4E-8 T 11-10-2018 dqs_3921 3bb6375dd5b3295f7e481ba02a5f2b19 164 SMART SM00257 112 161 2.0E-12 T 11-10-2018 IPR018392 LysM domain dqs_3921 3bb6375dd5b3295f7e481ba02a5f2b19 164 Pfam PF04972 BON domain 43 104 1.1E-9 T 11-10-2018 IPR007055 BON domain dqs_3921 3bb6375dd5b3295f7e481ba02a5f2b19 164 Pfam PF01476 LysM domain 113 161 1.7E-12 T 11-10-2018 IPR018392 LysM domain dqs_2698 0ea0e427810c9a8ac2113cd9ac7fecd3 229 TIGRFAM TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase 7 228 7.0E-121 T 11-10-2018 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase KEGG: 00362+4.1.3.17|KEGG: 00660+4.1.3.17|MetaCyc: PWY-7701 dqs_2698 0ea0e427810c9a8ac2113cd9ac7fecd3 229 Pfam PF03737 Aldolase/RraA 30 177 5.4E-39 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein dqs_2698 0ea0e427810c9a8ac2113cd9ac7fecd3 229 SUPERFAMILY SSF89562 26 188 2.75E-47 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily dqs_2698 0ea0e427810c9a8ac2113cd9ac7fecd3 229 Gene3D G3DSA:3.50.30.100 2 199 4.7E-53 T 11-10-2018 dqs_1621 005e3316d9f1130461071bde3f7f4fbe 138 Pfam PF11026 Protein of unknown function (DUF2721) 3 118 8.3E-33 T 11-10-2018 IPR021279 Protein of unknown function DUF2721 dqs_2372 68b88a42172ace1c48036a923d1bf8be 347 Pfam PF01757 Acyltransferase family 12 319 3.2E-16 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 dqs_0998 c9432089c0372eb7efa6ae1472a2b7b2 309 Pfam PF13464 Domain of unknown function (DUF4115) 237 308 1.4E-21 T 11-10-2018 IPR025194 Domain of unknown function DUF4115 dqs_0998 c9432089c0372eb7efa6ae1472a2b7b2 309 Pfam PF13413 Helix-turn-helix domain 20 80 1.7E-23 T 11-10-2018 dqs_0998 c9432089c0372eb7efa6ae1472a2b7b2 309 SUPERFAMILY SSF47413 17 81 4.74E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_0998 c9432089c0372eb7efa6ae1472a2b7b2 309 Gene3D G3DSA:1.10.260.40 11 95 1.3E-23 T 11-10-2018 dqs_0940 0c5238d4e56c74165fcb2e7babf78f9b 216 Pfam PF04972 BON domain 134 198 2.8E-12 T 11-10-2018 IPR007055 BON domain dqs_0940 0c5238d4e56c74165fcb2e7babf78f9b 216 Pfam PF04972 BON domain 65 124 2.3E-9 T 11-10-2018 IPR007055 BON domain dqs_0940 0c5238d4e56c74165fcb2e7babf78f9b 216 SMART SM00749 139 202 1.6E-8 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria dqs_0940 0c5238d4e56c74165fcb2e7babf78f9b 216 SMART SM00749 63 124 32.0 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria dqs_1864 351a7ee9a727c6c989cde45c66ee3414 416 Pfam PF07690 Major Facilitator Superfamily 9 337 4.2E-20 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 dqs_1864 351a7ee9a727c6c989cde45c66ee3414 416 SUPERFAMILY SSF103473 5 394 1.44E-24 T 11-10-2018 IPR036259 MFS transporter superfamily dqs_1864 351a7ee9a727c6c989cde45c66ee3414 416 Gene3D G3DSA:1.20.1250.20 4 400 4.4E-22 T 11-10-2018 dqs_2479 a6cf9b4d73c020e800d744a53d9da940 520 Pfam PF03929 PepSY-associated TM region 10 308 4.2E-14 T 11-10-2018 IPR005625 PepSY-associated TM protein dqs_2136 654b56c62073584df5677f88b646d437 528 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 20 211 3.0E-16 T 11-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 dqs_2136 654b56c62073584df5677f88b646d437 528 Gene3D G3DSA:3.40.920.10 11 222 5.4E-9 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 dqs_2136 654b56c62073584df5677f88b646d437 528 SUPERFAMILY SSF53323 13 228 2.88E-10 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 dqs_0897 1e86568dc1f20b842179a58a25d1fbb4 419 Pfam PF07399 Putative Na+/H+ antiporter 6 419 1.3E-186 T 11-10-2018 IPR009978 Putative Na+/H+ antiporter dqs_3049 df0cdeeb23c2477b3eec00b5db7ef565 394 Pfam PF12698 ABC-2 family transporter protein 46 383 9.3E-32 T 11-10-2018 dqs_0690 d2673cfc71d9ff337433cabee2488c9b 402 SUPERFAMILY SSF56935 32 402 2.35E-25 T 11-10-2018 dqs_0690 d2673cfc71d9ff337433cabee2488c9b 402 Gene3D G3DSA:2.40.160.10 99 376 7.5E-6 T 11-10-2018 IPR023614 Porin domain superfamily dqs_0954 0faa3b88f7e94b339e4940fd5648b89a 410 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 39 410 40.427 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0954 0faa3b88f7e94b339e4940fd5648b89a 410 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 42 401 7.4E-127 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0954 0faa3b88f7e94b339e4940fd5648b89a 410 Pfam PF01098 Cell cycle protein 44 402 3.3E-101 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0825 e128ab98a9a7634ffe6f6ff3f9d9ef3c 133 Pfam PF04138 GtrA-like protein 11 125 7.1E-24 T 11-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 dqs_2059 a1f05570924af6649af56613a30ff4a4 274 Pfam PF01148 Cytidylyltransferase family 3 265 2.6E-55 T 11-10-2018 dqs_2059 a1f05570924af6649af56613a30ff4a4 274 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 230 256 - T 11-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 dqs_0737 f5e854bfdb89661d439623a52c702178 314 Pfam PF01148 Cytidylyltransferase family 46 310 4.1E-62 T 11-10-2018 dqs_2943 ba9e7f33d92781ef39063ab6acb4570e 249 Pfam PF00899 ThiF family 9 243 2.5E-61 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 dqs_2943 ba9e7f33d92781ef39063ab6acb4570e 249 Gene3D G3DSA:3.40.50.720 1 249 5.3E-89 T 11-10-2018 dqs_2943 ba9e7f33d92781ef39063ab6acb4570e 249 SUPERFAMILY SSF69572 2 247 1.2E-82 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 dqs_0410 a5e6a9684e1d53f2150f8acb2b71536e 292 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 280 39.413 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 dqs_0410 a5e6a9684e1d53f2150f8acb2b71536e 292 Pfam PF03668 P-loop ATPase protein family 1 280 1.5E-93 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 dqs_0410 a5e6a9684e1d53f2150f8acb2b71536e 292 PIRSF PIRSF005052 1 283 3.4E-105 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 dqs_0410 a5e6a9684e1d53f2150f8acb2b71536e 292 SUPERFAMILY SSF52540 1 153 1.58E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1600 709403df369041f8b49d6d792d16ff5b 193 Gene3D G3DSA:3.40.50.360 2 192 4.4E-51 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_1600 709403df369041f8b49d6d792d16ff5b 193 SUPERFAMILY SSF52218 2 192 5.28E-56 T 11-10-2018 IPR029039 Flavoprotein-like superfamily dqs_1600 709403df369041f8b49d6d792d16ff5b 193 Pfam PF02525 Flavodoxin-like fold 3 186 7.5E-38 T 11-10-2018 IPR003680 Flavodoxin-like fold dqs_0775 89d8270ec7b1d63a2981471ab579f4d0 231 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 3 230 38.916 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0775 89d8270ec7b1d63a2981471ab579f4d0 231 SUPERFAMILY SSF53955 58 219 1.74E-59 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily dqs_0775 89d8270ec7b1d63a2981471ab579f4d0 231 Gene3D G3DSA:1.10.3810.10 52 228 7.1E-57 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0775 89d8270ec7b1d63a2981471ab579f4d0 231 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 14 228 1.4E-90 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0775 89d8270ec7b1d63a2981471ab579f4d0 231 Pfam PF00912 Transglycosylase 59 211 4.4E-55 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 dqs_0921 a5d53d4075595881bb98bd40cbf85189 438 SUPERFAMILY SSF56954 4 427 4.97E-85 T 11-10-2018 dqs_0921 a5d53d4075595881bb98bd40cbf85189 438 Gene3D G3DSA:1.20.1600.10 25 438 9.0E-114 T 11-10-2018 dqs_0921 a5d53d4075595881bb98bd40cbf85189 438 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 24 436 6.4E-100 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 dqs_0921 a5d53d4075595881bb98bd40cbf85189 438 Pfam PF02321 Outer membrane efflux protein 240 422 1.2E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_0921 a5d53d4075595881bb98bd40cbf85189 438 Pfam PF02321 Outer membrane efflux protein 28 215 1.7E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 dqs_1043 6393e99bb9683aa0d8dbfc7864710c99 575 Pfam PF01103 Surface antigen 377 574 6.0E-26 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 dqs_1043 6393e99bb9683aa0d8dbfc7864710c99 575 Gene3D G3DSA:2.40.160.50 269 573 5.4E-66 T 11-10-2018 dqs_1043 6393e99bb9683aa0d8dbfc7864710c99 575 Pfam PF07244 Surface antigen variable number repeat 127 190 3.9E-5 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 dqs_1043 6393e99bb9683aa0d8dbfc7864710c99 575 Gene3D G3DSA:3.10.20.310 193 268 6.7E-13 T 11-10-2018 dqs_0867 11894eb5cdca95930157c2d2d7ac7ab6 229 Pfam PF07963 Prokaryotic N-terminal methylation motif 10 34 8.7E-6 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_0867 11894eb5cdca95930157c2d2d7ac7ab6 229 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 33 1.8E-4 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_0867 11894eb5cdca95930157c2d2d7ac7ab6 229 SUPERFAMILY SSF54523 15 131 4.24E-8 T 11-10-2018 dqs_0513 1c048b4488798170b3bb38117eef653a 107 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 3.2E-29 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 dqs_0513 1c048b4488798170b3bb38117eef653a 107 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 2.6E-25 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 dqs_0513 1c048b4488798170b3bb38117eef653a 107 Gene3D G3DSA:3.30.160.100 1 105 1.2E-34 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like dqs_0513 1c048b4488798170b3bb38117eef653a 107 SUPERFAMILY SSF69754 1 101 9.94E-35 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like dqs_4016 3184aeefae8b7f1ea1213f836e69d2c3 193 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 19 42 5.2E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_0629 8465561643a6f88116e8be5d64a55d3f 261 PIRSF PIRSF028589 1 260 1.1E-38 T 11-10-2018 IPR016893 Protein of unknown function UCP028589 dqs_3431 8e7ab56e1c64e5ca1ba427e45ed6eec3 200 Gene3D G3DSA:3.40.30.10 32 193 1.5E-54 T 11-10-2018 dqs_3431 8e7ab56e1c64e5ca1ba427e45ed6eec3 200 Pfam PF02630 SCO1/SenC 37 172 1.4E-38 T 11-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3431 8e7ab56e1c64e5ca1ba427e45ed6eec3 200 SUPERFAMILY SSF52833 37 194 3.33E-51 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_0271 660abb8e41a15697d916b17605fb85a5 310 PIRSF PIRSF028561 11 310 6.7E-112 T 11-10-2018 IPR014548 Predicted acyltransferase dqs_0271 660abb8e41a15697d916b17605fb85a5 310 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 105 302 6.3E-16 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 dqs_0161 9179dcc3b5ec8e8daf4572b555b7c747 112 Pfam PF03899 ATP synthase I chain 4 98 2.6E-17 T 11-10-2018 IPR005598 ATP synthase protein I dqs_1577 943d37e2593c7f318870f23a234df077 624 Gene3D G3DSA:1.10.287.950 294 597 5.8E-83 T 11-10-2018 dqs_1577 943d37e2593c7f318870f23a234df077 624 SUPERFAMILY SSF58104 315 596 4.32E-70 T 11-10-2018 dqs_1577 943d37e2593c7f318870f23a234df077 624 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 409 563 3.3E-49 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1577 943d37e2593c7f318870f23a234df077 624 SUPERFAMILY SSF55785 120 249 3.14E-7 T 11-10-2018 IPR035965 PAS domain superfamily dqs_1577 943d37e2593c7f318870f23a234df077 624 SMART SM00304 348 400 41.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1577 943d37e2593c7f318870f23a234df077 624 SMART SM00304 71 124 3.7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1577 943d37e2593c7f318870f23a234df077 624 SMART SM00304 295 347 5.8E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 dqs_1577 943d37e2593c7f318870f23a234df077 624 SMART SM00283 348 595 3.4E-82 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 dqs_1577 943d37e2593c7f318870f23a234df077 624 Gene3D G3DSA:3.30.450.20 132 251 2.9E-32 T 11-10-2018 dqs_1577 943d37e2593c7f318870f23a234df077 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 369 398 3.8E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_1577 943d37e2593c7f318870f23a234df077 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 475 504 3.8E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_1577 943d37e2593c7f318870f23a234df077 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 446 473 3.8E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_1577 943d37e2593c7f318870f23a234df077 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 523 552 3.8E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 dqs_0056 da9ded8ba51f1ac9e4a649b139f83371 308 SUPERFAMILY SSF53474 16 305 5.46E-69 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0056 da9ded8ba51f1ac9e4a649b139f83371 308 Pfam PF00561 alpha/beta hydrolase fold 41 165 2.4E-23 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_0056 da9ded8ba51f1ac9e4a649b139f83371 308 Gene3D G3DSA:3.40.50.1820 18 305 3.5E-82 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0710 555fe32c3e692f7793f52e235fb8abea 294 SUPERFAMILY SSF81345 17 273 3.14E-20 T 11-10-2018 IPR037294 ABC transporter, BtuC-like dqs_0710 555fe32c3e692f7793f52e235fb8abea 294 Pfam PF00950 ABC 3 transport family 18 275 1.0E-49 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 dqs_2596 3c0effd1d5c124ae82460cb55fac6e7a 146 Gene3D G3DSA:1.10.1510.10 1 88 1.6E-5 T 11-10-2018 dqs_2596 3c0effd1d5c124ae82460cb55fac6e7a 146 Gene3D G3DSA:1.10.10.410 89 145 3.4E-7 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal dqs_2596 3c0effd1d5c124ae82460cb55fac6e7a 146 SUPERFAMILY SSF89095 1 144 9.42E-20 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 dqs_2596 3c0effd1d5c124ae82460cb55fac6e7a 146 Pfam PF09424 Yqey-like protein 6 144 1.6E-17 T 11-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 dqs_0385 185c6e24431a7542d1b27e19e0120d4c 298 Pfam PF01136 Peptidase family U32 92 193 2.8E-11 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 dqs_2409 c57bdc89156f489b9015892c983f092a 402 Gene3D G3DSA:1.20.1530.20 13 399 3.2E-26 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily dqs_2409 c57bdc89156f489b9015892c983f092a 402 Pfam PF00999 Sodium/hydrogen exchanger family 21 387 9.3E-28 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 dqs_2015 048c067bb5927694f1d52a6d7c645fe2 150 Pfam PF01381 Helix-turn-helix 21 59 3.9E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 dqs_2015 048c067bb5927694f1d52a6d7c645fe2 150 Gene3D G3DSA:1.10.260.40 19 67 2.1E-7 T 11-10-2018 dqs_2015 048c067bb5927694f1d52a6d7c645fe2 150 SUPERFAMILY SSF47413 21 58 4.61E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_2015 048c067bb5927694f1d52a6d7c645fe2 150 Pfam PF12472 Phage related protein 62 123 3.6E-5 T 11-10-2018 IPR021096 Vibrio phage VSK, Orf152 dqs_0879 ba71acdf851a813028bdad01659ac462 286 Pfam PF04333 MlaA lipoprotein 34 226 3.3E-75 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 dqs_0879 ba71acdf851a813028bdad01659ac462 286 PRINTS PR01805 VacJ lipoprotein signature 52 68 6.2E-26 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 dqs_0879 ba71acdf851a813028bdad01659ac462 286 PRINTS PR01805 VacJ lipoprotein signature 35 48 6.2E-26 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 dqs_0879 ba71acdf851a813028bdad01659ac462 286 PRINTS PR01805 VacJ lipoprotein signature 139 156 6.2E-26 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 dqs_0879 ba71acdf851a813028bdad01659ac462 286 PRINTS PR01805 VacJ lipoprotein signature 103 120 6.2E-26 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 95 119 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 293 308 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 138 150 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 196 215 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 352 370 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 21 46 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 68 91 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 317 338 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 167 185 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 430 451 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 247 268 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 PRINTS PR01165 Cytochrome c oxidase subunit I signature 380 399 5.8E-121 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 22 524 6.6E-219 T 11-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 Gene3D G3DSA:1.20.210.10 15 525 2.1E-222 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 30 471 3.5E-153 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 SUPERFAMILY SSF81442 19 524 3.27E-196 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3441 fb1392e33ceb71b286b165917f1e28f7 525 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 249 303 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_2244 00d64fac6c0d961ba3be403ba19f17b9 276 Hamap MF_01805 Segregation and condensation protein A [scpA]. 41 270 20.86 T 11-10-2018 IPR003768 Segregation and condensation protein A dqs_2244 00d64fac6c0d961ba3be403ba19f17b9 276 Pfam PF02616 Segregation and condensation protein ScpA 58 268 1.6E-26 T 11-10-2018 IPR003768 Segregation and condensation protein A dqs_2312 cfa0d85a4363005fbf58a0f0c4fc79bb 135 Pfam PF12019 Type II transport protein GspH 30 125 9.1E-15 T 11-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 dqs_2312 cfa0d85a4363005fbf58a0f0c4fc79bb 135 Gene3D G3DSA:3.55.40.10 17 134 4.6E-13 T 11-10-2018 dqs_2312 cfa0d85a4363005fbf58a0f0c4fc79bb 135 SUPERFAMILY SSF54523 1 99 8.63E-13 T 11-10-2018 dqs_2926 ca846edd4570b0acc4073dec97123b9e 225 Pfam PF01794 Ferric reductase like transmembrane component 59 166 4.7E-14 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain dqs_2926 ca846edd4570b0acc4073dec97123b9e 225 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 11 205 21.823 T 11-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 dqs_2632 03c245f3d09b6214c4b9a4371f0f87c8 235 SUPERFAMILY SSF103039 15 176 3.66E-21 T 11-10-2018 IPR028976 CheC-like superfamily dqs_2632 03c245f3d09b6214c4b9a4371f0f87c8 235 Pfam PF11813 Protein of unknown function (DUF3334) 10 235 1.5E-115 T 11-10-2018 IPR024513 Protein of unknown function DUF3334 dqs_2632 03c245f3d09b6214c4b9a4371f0f87c8 235 Gene3D G3DSA:3.40.1550.10 14 178 3.9E-16 T 11-10-2018 IPR028976 CheC-like superfamily dqs_0783 1f73eb5e0f364ee61a9aeb78f1cb8f39 177 Pfam PF10649 Protein of unknown function (DUF2478) 11 169 3.0E-55 T 11-10-2018 IPR018912 Protein of unknown function DUF2478 dqs_3251 6d8ee89920222b1b42bf393b9f821ab6 389 Pfam PF01610 Transposase 266 387 1.2E-7 T 11-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain dqs_3251 6d8ee89920222b1b42bf393b9f821ab6 389 Pfam PF00487 Fatty acid desaturase 10 223 3.8E-14 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 dqs_1922 3e7d91fa2a04747dce728b3c9608e09e 340 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 11 330 1.0E-78 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 dqs_2315 d4072f31623158c0b74a74faf5d60c50 64 Pfam PF14070 Putative motility protein 6 63 1.5E-18 T 11-10-2018 IPR025906 Putative motility protein dqs_0358 1c55ae487fb648dbb1d6ae03a2ca893b 546 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 8 544 1.9E-122 T 11-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 dqs_0358 1c55ae487fb648dbb1d6ae03a2ca893b 546 PRINTS PR01084 Na+/H+ exchanger signature 55 66 4.2E-6 T 11-10-2018 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 dqs_0358 1c55ae487fb648dbb1d6ae03a2ca893b 546 PRINTS PR01084 Na+/H+ exchanger signature 69 83 4.2E-6 T 11-10-2018 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 dqs_0358 1c55ae487fb648dbb1d6ae03a2ca893b 546 PRINTS PR01084 Na+/H+ exchanger signature 119 129 4.2E-6 T 11-10-2018 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 dqs_0358 1c55ae487fb648dbb1d6ae03a2ca893b 546 Pfam PF00999 Sodium/hydrogen exchanger family 10 419 1.3E-64 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 dqs_1930 9f81613140fb23ba817f15420c89665a 128 Pfam PF06150 ChaB 8 62 8.9E-15 T 11-10-2018 IPR009317 ChaB dqs_1930 9f81613140fb23ba817f15420c89665a 128 SUPERFAMILY SSF140376 6 63 4.58E-14 T 11-10-2018 IPR037205 ChaB superfamily dqs_3718 10142d4ed190aa84d8e9f5a4b6576685 266 Pfam PF04230 Polysaccharide pyruvyl transferase 129 197 1.7E-10 T 11-10-2018 IPR007345 Polysaccharide pyruvyl transferase dqs_2799 3d90eaafda7d1d504de68478f9feeb46 493 Pfam PF01384 Phosphate transporter family 30 241 7.5E-48 T 11-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 dqs_0547 5d8e993262b7caf8b9ebaa74d2c4c8c3 280 Pfam PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) 23 277 7.2E-90 T 11-10-2018 IPR009953 Dinitrogenase reductase ADP-ribosyltransferase GO:0009399|GO:0030701 dqs_3254 22f4b66d5a7370e99510634a427913e5 430 SUPERFAMILY SSF53335 124 425 1.1E-71 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_3254 22f4b66d5a7370e99510634a427913e5 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 355 371 1.6E-28 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_3254 22f4b66d5a7370e99510634a427913e5 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 207 221 1.6E-28 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_3254 22f4b66d5a7370e99510634a427913e5 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 305 317 1.6E-28 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_3254 22f4b66d5a7370e99510634a427913e5 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 236 246 1.6E-28 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_3254 22f4b66d5a7370e99510634a427913e5 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 408 425 1.6E-28 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase dqs_3254 22f4b66d5a7370e99510634a427913e5 430 Gene3D G3DSA:3.40.50.150 124 425 5.1E-83 T 11-10-2018 dqs_3254 22f4b66d5a7370e99510634a427913e5 430 Pfam PF01189 16S rRNA methyltransferase RsmB/F 226 423 8.0E-49 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 dqs_3208 ef52073b07e7ca39c2a1c0b1f690c831 216 Pfam PF13643 Domain of unknown function (DUF4145) 96 172 2.3E-14 T 11-10-2018 IPR025285 Domain of unknown function DUF4145 dqs_2434 f2171bff0764189a8a0efd788cdb612f 418 Pfam PF07399 Putative Na+/H+ antiporter 6 418 6.4E-194 T 11-10-2018 IPR009978 Putative Na+/H+ antiporter dqs_2899 15ecdea42fee4f70b50c1380e3489c20 175 Gene3D G3DSA:3.90.79.10 1 158 7.1E-45 T 11-10-2018 dqs_2899 15ecdea42fee4f70b50c1380e3489c20 175 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.1E-7 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 dqs_2899 15ecdea42fee4f70b50c1380e3489c20 175 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.1E-7 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 dqs_2899 15ecdea42fee4f70b50c1380e3489c20 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 38.099 T 11-10-2018 IPR022927 RNA pyrophosphohydrolase RppH dqs_2899 15ecdea42fee4f70b50c1380e3489c20 175 SUPERFAMILY SSF55811 6 159 1.9E-31 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 dqs_2899 15ecdea42fee4f70b50c1380e3489c20 175 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 dqs_2899 15ecdea42fee4f70b50c1380e3489c20 175 Pfam PF00293 NUDIX domain 7 138 8.7E-23 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 dqs_0228 2be8b7caf8906a1fd3a87e77a51618cd 291 Pfam PF00583 Acetyltransferase (GNAT) family 41 126 2.3E-10 T 11-10-2018 IPR000182 GNAT domain dqs_0228 2be8b7caf8906a1fd3a87e77a51618cd 291 Gene3D G3DSA:3.40.630.30 5 147 1.7E-19 T 11-10-2018 dqs_0228 2be8b7caf8906a1fd3a87e77a51618cd 291 SUPERFAMILY SSF55729 15 270 7.3E-40 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase dqs_1702 c34f97effb36adccc19dac1fce9e4262 185 Pfam PF13511 Domain of unknown function (DUF4124) 13 64 1.6E-7 T 11-10-2018 IPR025392 Domain of unknown function DUF4124 dqs_3404 90674ca306f5b25b782326cb1ac7733f 232 Pfam PF01522 Polysaccharide deacetylase 2 183 1.1E-19 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 dqs_3404 90674ca306f5b25b782326cb1ac7733f 232 SUPERFAMILY SSF88713 2 204 3.95E-24 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 dqs_1254 928b96b6c5d527a34d30ee56d770539e 147 Gene3D G3DSA:2.60.40.2470 25 147 1.9E-39 T 11-10-2018 IPR038162 Ig-like SoxY domain superfamily dqs_1254 928b96b6c5d527a34d30ee56d770539e 147 TIGRFAM TIGR04488 SoxY_true_GGCGG: thiosulfate oxidation carrier protein SoxY 13 146 1.2E-42 T 11-10-2018 IPR016568 Sulphur oxidation, SoxY dqs_1254 928b96b6c5d527a34d30ee56d770539e 147 PIRSF PIRSF010312 6 147 8.9E-41 T 11-10-2018 IPR016568 Sulphur oxidation, SoxY dqs_1254 928b96b6c5d527a34d30ee56d770539e 147 Pfam PF13501 Sulfur oxidation protein SoxY 44 145 1.5E-31 T 11-10-2018 IPR032711 Ig-like SoxY domain dqs_3087 ae61811536bb0ff0d612e8d1571ac917 113 Gene3D G3DSA:2.40.50.320 40 113 9.3E-24 T 11-10-2018 dqs_3087 ae61811536bb0ff0d612e8d1571ac917 113 Pfam PF11604 Copper binding periplasmic protein CusF 45 110 2.5E-27 T 11-10-2018 IPR021647 Copper binding periplasmic protein CusF dqs_0457 be79bb6dc97734a6801bf25c937fe062 222 SUPERFAMILY SSF56300 30 170 1.29E-12 T 11-10-2018 dqs_0457 be79bb6dc97734a6801bf25c937fe062 222 Gene3D G3DSA:3.60.21.10 28 177 6.8E-6 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like dqs_0457 be79bb6dc97734a6801bf25c937fe062 222 PIRSF PIRSF000887 9 203 1.8E-41 T 11-10-2018 IPR024173 Phosphoesterase, MJ0037 dqs_0457 be79bb6dc97734a6801bf25c937fe062 222 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 10 218 1.1E-61 T 11-10-2018 IPR026336 Metallophosphoesterase, DNA ligase-associated dqs_1825 0f60b87b3cdefa3cdb29db26201a99a1 248 SUPERFAMILY SSF53474 29 224 4.01E-15 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1825 0f60b87b3cdefa3cdb29db26201a99a1 248 Gene3D G3DSA:3.40.50.1820 10 225 1.1E-27 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0745 085d5eacbe7138188b65bd75b5541297 397 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 347 4.6E-39 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_0745 085d5eacbe7138188b65bd75b5541297 397 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 45 358 8.7E-136 T 11-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC dqs_0058 d2471961ec560b3830c0b6a8c34807bb 278 Pfam PF09906 Uncharacterized protein conserved in bacteria (DUF2135) 208 264 1.6E-17 T 11-10-2018 IPR019220 Domain of unknown function DUF2135 dqs_0058 d2471961ec560b3830c0b6a8c34807bb 278 PIRSF PIRSF012281 10 278 1.6E-106 T 11-10-2018 IPR012039 Uncharacterised conserved protein UCP012281 dqs_1831 2178e49a6c2351ab03feee4e06f6b590 422 Pfam PF02308 MgtC family 16 133 1.2E-20 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 dqs_1831 2178e49a6c2351ab03feee4e06f6b590 422 Pfam PF13194 Domain of unknown function (DUF4010) 182 389 8.5E-58 T 11-10-2018 IPR025105 Domain of unknown function DUF4010 dqs_2049 dc95b7d9540793613069ba2d8360f0b5 151 Pfam PF05425 Copper resistance protein D 47 146 2.8E-9 T 11-10-2018 IPR008457 Copper resistance protein D GO:0016021 dqs_0732 321f26e123e30ba8ba0f10956c517ed4 203 Pfam PF01066 CDP-alcohol phosphatidyltransferase 28 95 2.8E-9 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 dqs_0732 321f26e123e30ba8ba0f10956c517ed4 203 Gene3D G3DSA:1.20.120.1760 8 202 4.9E-21 T 11-10-2018 dqs_0649 3d0f0a590b43c48db3ddea07e71df711 318 Pfam PF00892 EamA-like transporter family 178 314 6.8E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0649 3d0f0a590b43c48db3ddea07e71df711 318 Pfam PF00892 EamA-like transporter family 28 163 2.1E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 dqs_0649 3d0f0a590b43c48db3ddea07e71df711 318 SUPERFAMILY SSF103481 238 317 9.42E-13 T 11-10-2018 dqs_0649 3d0f0a590b43c48db3ddea07e71df711 318 SUPERFAMILY SSF103481 62 165 8.37E-14 T 11-10-2018 dqs_2474 2391275c9b1d84e58ad8f847eaabb281 126 SUPERFAMILY SSF47175 55 125 1.46E-6 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 dqs_2114 db5aef8fe1a29b03ad3ff453a81b504a 441 Gene3D G3DSA:3.30.70.360 213 340 3.9E-52 T 11-10-2018 dqs_2114 db5aef8fe1a29b03ad3ff453a81b504a 441 SUPERFAMILY SSF53187 8 392 1.77E-24 T 11-10-2018 dqs_2114 db5aef8fe1a29b03ad3ff453a81b504a 441 Gene3D G3DSA:3.40.630.10 37 400 3.9E-52 T 11-10-2018 dqs_2286 ecd7dc457280d6143aa1c1f908200330 158 Gene3D G3DSA:2.60.40.1890 31 145 1.5E-36 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily dqs_2286 ecd7dc457280d6143aa1c1f908200330 158 SUPERFAMILY SSF110087 6 141 6.28E-44 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily dqs_2286 ecd7dc457280d6143aa1c1f908200330 158 Pfam PF04314 Copper chaperone PCu(A)C 28 129 9.7E-35 T 11-10-2018 IPR007410 Copper chaperone PCuAC dqs_2831 9fc659ec021c46ae0462be1b3e9e8abb 268 Pfam PF05711 Macrocin-O-methyltransferase (TylF) 69 229 1.0E-6 T 11-10-2018 IPR008884 Macrocin-O-methyltransferase dqs_2831 9fc659ec021c46ae0462be1b3e9e8abb 268 Gene3D G3DSA:3.40.50.150 31 268 3.3E-69 T 11-10-2018 dqs_3654 e66d6f69cd489121f1c8d837cbe41473 288 SUPERFAMILY SSF111364 26 277 9.55E-49 T 11-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 dqs_3654 e66d6f69cd489121f1c8d837cbe41473 288 Gene3D G3DSA:2.40.230.20 35 281 9.3E-10 T 11-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 dqs_1822 483359aca4cb29ab21b85e4ea0687fcc 321 SUPERFAMILY SSF143865 2 253 1.28E-68 T 11-10-2018 dqs_1822 483359aca4cb29ab21b85e4ea0687fcc 321 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 321 7.3E-63 T 11-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 dqs_1822 483359aca4cb29ab21b85e4ea0687fcc 321 Gene3D G3DSA:1.20.58.340 131 243 1.1E-34 T 11-10-2018 dqs_1822 483359aca4cb29ab21b85e4ea0687fcc 321 SUPERFAMILY SSF144083 257 318 1.24E-17 T 11-10-2018 dqs_1822 483359aca4cb29ab21b85e4ea0687fcc 321 Gene3D G3DSA:1.20.58.340 245 321 4.5E-22 T 11-10-2018 dqs_1822 483359aca4cb29ab21b85e4ea0687fcc 321 Gene3D G3DSA:3.30.460.20 1 130 1.3E-26 T 11-10-2018 dqs_1822 483359aca4cb29ab21b85e4ea0687fcc 321 Pfam PF01544 CorA-like Mg2+ transporter protein 31 317 2.8E-61 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 dqs_2616 090511c638d6970f48cff97e69e8c298 345 SUPERFAMILY SSF53850 134 281 2.44E-5 T 11-10-2018 dqs_2616 090511c638d6970f48cff97e69e8c298 345 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 316 1.6E-47 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 dqs_2616 090511c638d6970f48cff97e69e8c298 345 Gene3D G3DSA:3.40.190.170 26 343 7.5E-102 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily dqs_3016 a3c2b506dd670b5f724c55f2cff71515 257 Pfam PF09955 Predicted integral membrane protein (DUF2189) 69 192 1.9E-38 T 11-10-2018 IPR018692 Predicted integral membrane protein DUF2189 dqs_3681 6d24f0f932145812e99aae38a201072f 130 SUPERFAMILY SSF52833 24 120 7.83E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily dqs_3681 6d24f0f932145812e99aae38a201072f 130 Gene3D G3DSA:3.40.30.10 24 124 3.4E-26 T 11-10-2018 dqs_3681 6d24f0f932145812e99aae38a201072f 130 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 105 8.7E-6 T 11-10-2018 dqs_0823 c331f6814bd9018922927f8437d5f675 342 Gene3D G3DSA:3.90.550.10 14 243 4.4E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_0823 c331f6814bd9018922927f8437d5f675 342 Pfam PF00535 Glycosyl transferase family 2 29 167 2.0E-30 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 dqs_0823 c331f6814bd9018922927f8437d5f675 342 SUPERFAMILY SSF53448 28 258 1.45E-36 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases dqs_1899 f99ffc02d7714b1baa2164fa5daca431 52 Pfam PF11752 Protein of unknown function (DUF3309) 4 52 3.3E-24 T 11-10-2018 IPR021738 Protein of unknown function DUF3309 dqs_1659 bdd6c21bfe5388b39d7ac2b48c58915c 159 Gene3D G3DSA:1.10.760.10 2 135 9.3E-11 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1659 bdd6c21bfe5388b39d7ac2b48c58915c 159 SUPERFAMILY SSF46626 21 143 3.42E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 dqs_1851 ebb1fc5ac75942f25e7492d2302f5949 206 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 4 192 9.9E-15 T 11-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 dqs_1851 ebb1fc5ac75942f25e7492d2302f5949 206 Gene3D G3DSA:1.10.1760.20 1 191 5.6E-7 T 11-10-2018 dqs_0089 d5b5df57dfc293baed700a4788126921 402 Gene3D G3DSA:3.90.1860.10 2 402 1.2E-114 T 11-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 dqs_0089 d5b5df57dfc293baed700a4788126921 402 Pfam PF01139 tRNA-splicing ligase RtcB 28 402 2.0E-129 T 11-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 dqs_0089 d5b5df57dfc293baed700a4788126921 402 SUPERFAMILY SSF103365 12 402 1.96E-132 T 11-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 dqs_0877 7f156e6b157676fb972ac589d27aed3d 263 Pfam PF02405 Permease MlaE 47 257 1.9E-73 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 dqs_0877 7f156e6b157676fb972ac589d27aed3d 263 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 22 262 2.8E-84 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria dqs_1373 1555643234cf798b08d25e85af397208 702 Pfam PF01650 Peptidase C13 family 522 660 5.1E-27 T 11-10-2018 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 dqs_4036 f58aaedee4161fafa774357700a65ea3 444 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 443 2.4E-148 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 dqs_4036 f58aaedee4161fafa774357700a65ea3 444 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 442 9.2E-155 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 dqs_2248 4be3c3dce3726d7dd9f41eab018e2561 300 Gene3D G3DSA:3.40.50.1820 13 292 2.3E-60 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2248 4be3c3dce3726d7dd9f41eab018e2561 300 PRINTS PR00111 Alpha/beta hydrolase fold signature 121 134 2.1E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2248 4be3c3dce3726d7dd9f41eab018e2561 300 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 2.1E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2248 4be3c3dce3726d7dd9f41eab018e2561 300 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 2.1E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2248 4be3c3dce3726d7dd9f41eab018e2561 300 Pfam PF12697 Alpha/beta hydrolase family 39 291 2.2E-21 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 dqs_2248 4be3c3dce3726d7dd9f41eab018e2561 300 SUPERFAMILY SSF53474 11 296 1.1E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_3226 d04380592d80f44d77823767dab45936 266 Pfam PF07728 AAA domain (dynein-related subfamily) 33 166 1.2E-33 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 dqs_3226 d04380592d80f44d77823767dab45936 266 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 179 262 6.5E-28 T 11-10-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal dqs_3226 d04380592d80f44d77823767dab45936 266 SUPERFAMILY SSF52540 24 216 3.89E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_3226 d04380592d80f44d77823767dab45936 266 Gene3D G3DSA:3.40.50.300 18 183 4.5E-28 T 11-10-2018 dqs_0780 8f0f543d9b0ace619635081ae16f546e 197 Pfam PF05728 Uncharacterised protein family (UPF0227) 7 194 6.1E-56 T 11-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA dqs_0780 8f0f543d9b0ace619635081ae16f546e 197 SUPERFAMILY SSF53474 3 193 8.18E-20 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0780 8f0f543d9b0ace619635081ae16f546e 197 Gene3D G3DSA:3.40.50.1820 7 195 2.5E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_2841 12696f1d9e4f29a4748a0a6a2663a883 473 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 9 102 1.2E-21 T 11-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 dqs_2841 12696f1d9e4f29a4748a0a6a2663a883 473 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 227 454 1.5E-54 T 11-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 dqs_0412 206a02e108abce8b46b470081b0bfeac 180 Pfam PF07456 Heptaprenyl diphosphate synthase component I 22 166 7.9E-43 T 11-10-2018 IPR010898 Heptaprenyl diphosphate synthase component I dqs_0412 206a02e108abce8b46b470081b0bfeac 180 PIRSF PIRSF027391 16 179 6.3E-29 T 11-10-2018 IPR014535 Predicted heptaprenyl diphosphate synthase, component I dqs_0412 206a02e108abce8b46b470081b0bfeac 180 Gene3D G3DSA:1.10.1760.20 17 172 4.4E-9 T 11-10-2018 dqs_1312 5975b5a45f8e794ae8cb7653c969ca91 269 Gene3D G3DSA:3.10.270.10 20 268 2.6E-102 T 11-10-2018 dqs_1312 5975b5a45f8e794ae8cb7653c969ca91 269 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 9 264 38.688 T 11-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 dqs_1312 5975b5a45f8e794ae8cb7653c969ca91 269 Pfam PF02649 Type I GTP cyclohydrolase folE2 9 259 4.5E-101 T 11-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 dqs_0137 09020b670234792382b60ba623d21af0 138 Pfam PF07784 Protein of unknown function (DUF1622) 31 107 1.4E-25 T 11-10-2018 IPR012427 Protein of unknown function DUF1622 dqs_0654 89b23121b72881f8965eaa49af8c7515 277 Gene3D G3DSA:3.20.20.220 1 277 1.7E-97 T 11-10-2018 dqs_0654 89b23121b72881f8965eaa49af8c7515 277 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 6 274 2.2E-100 T 11-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 dqs_0654 89b23121b72881f8965eaa49af8c7515 277 Pfam PF02219 Methylenetetrahydrofolate reductase 3 275 3.8E-88 T 11-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 dqs_0654 89b23121b72881f8965eaa49af8c7515 277 SUPERFAMILY SSF51730 4 276 1.39E-97 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like dqs_3629 ec8f37afb051859a4747590c6b55f60d 193 Pfam PF11748 Protein of unknown function (DUF3306) 5 117 6.8E-30 T 11-10-2018 IPR021735 Protein of unknown function DUF3306 dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 Pfam PF01145 SPFH domain / Band 7 family 25 196 8.7E-32 T 11-10-2018 IPR001107 Band 7 domain dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 SMART SM00244 21 179 1.4E-53 T 11-10-2018 IPR001107 Band 7 domain dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 PRINTS PR00721 Stomatin signature 76 97 5.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 PRINTS PR00721 Stomatin signature 131 154 5.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 PRINTS PR00721 Stomatin signature 111 128 5.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 PRINTS PR00721 Stomatin signature 155 173 5.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 PRINTS PR00721 Stomatin signature 174 195 5.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 PRINTS PR00721 Stomatin signature 28 50 5.5E-29 T 11-10-2018 IPR001972 Stomatin family GO:0016020 dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 Gene3D G3DSA:3.30.479.30 49 181 1.2E-37 T 11-10-2018 dqs_2400 9f23ff540bcbc8a707e294241872cdeb 287 SUPERFAMILY SSF117892 52 185 1.57E-37 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily dqs_3702 0e6153bbcac33a90b9bee94570998123 520 Pfam PF05987 Bacterial protein of unknown function (DUF898) 201 513 9.0E-105 T 11-10-2018 IPR010295 Protein of unknown function DUF898 dqs_0811 9e12ad7c905dab8bcb802962e465e1f7 158 Pfam PF13511 Domain of unknown function (DUF4124) 11 64 3.1E-14 T 11-10-2018 IPR025392 Domain of unknown function DUF4124 dqs_2318 578f14c983476877b6773accae1db97e 75 Pfam PF10981 Protein of unknown function (DUF2788) 22 72 2.0E-23 T 11-10-2018 IPR021249 Protein of unknown function DUF2788 dqs_0929 1b3c9cc49a02464da164247e1d3e4679 157 Pfam PF05433 Glycine zipper 2TM domain 65 105 2.4E-8 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 dqs_2462 6b397f29f1dab902631cc38642192414 142 Gene3D G3DSA:3.30.420.270 66 135 4.5E-7 T 11-10-2018 dqs_2462 6b397f29f1dab902631cc38642192414 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 18 136 4.0E-21 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 dqs_3580 be08d9aada19ced856da599475aaee53 309 Gene3D G3DSA:3.40.50.2300 128 290 7.9E-24 T 11-10-2018 dqs_3580 be08d9aada19ced856da599475aaee53 309 Gene3D G3DSA:3.40.50.2300 78 274 7.9E-24 T 11-10-2018 dqs_3580 be08d9aada19ced856da599475aaee53 309 Pfam PF04392 ABC transporter substrate binding protein 128 291 3.6E-16 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein dqs_1299 386683045a1f515367da28df32f09162 438 Pfam PF07804 HipA-like C-terminal domain 147 404 2.1E-46 T 11-10-2018 IPR012893 HipA-like, C-terminal dqs_1299 386683045a1f515367da28df32f09162 438 Pfam PF13657 HipA N-terminal domain 2 98 4.7E-20 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 dqs_1299 386683045a1f515367da28df32f09162 438 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 1 99 1.8E-25 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 dqs_2805 a51df2fffa4539200856a30ad031c2c1 156 Pfam PF10517 Electron transfer DM13 60 155 1.6E-19 T 11-10-2018 IPR019545 DM13 domain dqs_1383 2949e414b6c48fb06dd6a93cc39d3e00 81 Gene3D G3DSA:1.10.720.30 21 80 5.5E-29 T 11-10-2018 IPR036361 SAP domain superfamily dqs_1383 2949e414b6c48fb06dd6a93cc39d3e00 81 Pfam PF09905 DNA-binding protein VF530 14 75 2.1E-33 T 11-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 dqs_0638 c4b6d2b209e937d4db8994c112933c6d 97 Gene3D G3DSA:1.10.260.40 1 89 4.2E-9 T 11-10-2018 dqs_0638 c4b6d2b209e937d4db8994c112933c6d 97 SUPERFAMILY SSF47413 8 56 3.49E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 dqs_1391 e025415631a9c06958edff4b636ed1e9 299 SUPERFAMILY SSF53335 54 266 5.41E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1391 e025415631a9c06958edff4b636ed1e9 299 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 163 177 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 dqs_1391 e025415631a9c06958edff4b636ed1e9 299 Gene3D G3DSA:3.40.50.150 40 236 1.3E-33 T 11-10-2018 dqs_1391 e025415631a9c06958edff4b636ed1e9 299 Pfam PF13649 Methyltransferase domain 70 169 8.0E-21 T 11-10-2018 dqs_2787 7e51aee76bd9713a757086a0a1cdd577 118 Pfam PF09919 Uncharacterized conserved protein (DUF2149) 17 104 5.3E-23 T 11-10-2018 IPR018676 Protein of unknown function DUF2149 dqs_3710 942a40145f99115f9dc2dd19c84123f1 377 Gene3D G3DSA:3.40.50.2000 12 169 6.3E-108 T 11-10-2018 dqs_3710 942a40145f99115f9dc2dd19c84123f1 377 Gene3D G3DSA:3.40.50.2000 170 339 6.3E-108 T 11-10-2018 dqs_3710 942a40145f99115f9dc2dd19c84123f1 377 SUPERFAMILY SSF53756 4 360 1.43E-59 T 11-10-2018 dqs_3710 942a40145f99115f9dc2dd19c84123f1 377 Pfam PF00534 Glycosyl transferases group 1 198 352 2.6E-29 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 dqs_0275 03915717abe48c9a5d85e60a3c0665af 94 Gene3D G3DSA:1.10.1200.10 12 92 5.2E-16 T 11-10-2018 IPR036736 ACP-like superfamily dqs_0275 03915717abe48c9a5d85e60a3c0665af 94 SUPERFAMILY SSF47336 15 91 9.81E-10 T 11-10-2018 IPR036736 ACP-like superfamily dqs_0275 03915717abe48c9a5d85e60a3c0665af 94 Pfam PF00550 Phosphopantetheine attachment site 18 87 3.4E-7 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain dqs_1687 45f7f8123674ca5dd0372e7345deade4 156 Gene3D G3DSA:3.90.1170.40 1 148 3.3E-51 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 dqs_1687 45f7f8123674ca5dd0372e7345deade4 156 SUPERFAMILY SSF54690 3 148 5.75E-52 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 dqs_1687 45f7f8123674ca5dd0372e7345deade4 156 Pfam PF02391 MoaE protein 5 119 1.3E-36 T 11-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 dqs_1688 de740e3ce333a705acd2e616e989d4ed 167 TIGRFAM TIGR01841 phasin: phasin family protein 27 110 2.2E-15 T 11-10-2018 IPR010127 Phasin, subfamily 1 dqs_1688 de740e3ce333a705acd2e616e989d4ed 167 Pfam PF09361 Phasin protein 6 104 1.6E-26 T 11-10-2018 IPR018968 Phasin dqs_0442 d94513b70acac3406dd70c93e8de5d06 176 Pfam PF06073 Bacterial protein of unknown function (DUF934) 57 167 1.9E-38 T 11-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 dqs_0442 d94513b70acac3406dd70c93e8de5d06 176 PIRSF PIRSF030820 1 175 1.4E-47 T 11-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 dqs_2806 90a0d1eb1f1d7cd2c818c9e61dfd12bd 158 SUPERFAMILY SSF49777 2 147 7.33E-48 T 11-10-2018 IPR036610 PEBP-like superfamily dqs_2806 90a0d1eb1f1d7cd2c818c9e61dfd12bd 158 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 20 153 1.2E-38 T 11-10-2018 IPR005247 YbhB/YbcL dqs_2806 90a0d1eb1f1d7cd2c818c9e61dfd12bd 158 Pfam PF01161 Phosphatidylethanolamine-binding protein 17 154 2.6E-38 T 11-10-2018 IPR008914 Phosphatidylethanolamine-binding protein dqs_2806 90a0d1eb1f1d7cd2c818c9e61dfd12bd 158 Gene3D G3DSA:3.90.280.10 2 157 7.6E-56 T 11-10-2018 IPR036610 PEBP-like superfamily dqs_0627 9b9e8df0442f573de2041cc99f828fdc 137 Pfam PF07030 Protein of unknown function (DUF1320) 3 114 4.7E-37 T 11-10-2018 IPR009752 Bacteriophage Mu, Gp36 dqs_0768 f18a6f1b5439f9e390c84ef7bc66b39d 246 Pfam PF07589 PEP-CTERM motif 222 244 9.7E-7 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_0768 f18a6f1b5439f9e390c84ef7bc66b39d 246 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 223 245 4.8E-4 T 11-10-2018 IPR013424 PEP-CTERM protein-sorting domain dqs_1763 c600b4e376e965a8d90c4e57b4b915e3 321 Gene3D G3DSA:3.40.190.10 125 246 2.4E-91 T 11-10-2018 dqs_1763 c600b4e376e965a8d90c4e57b4b915e3 321 SUPERFAMILY SSF53850 110 276 9.78E-8 T 11-10-2018 dqs_1763 c600b4e376e965a8d90c4e57b4b915e3 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 317 1.8E-63 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 dqs_1763 c600b4e376e965a8d90c4e57b4b915e3 321 Gene3D G3DSA:3.40.190.150 28 311 2.4E-91 T 11-10-2018 dqs_1763 c600b4e376e965a8d90c4e57b4b915e3 321 PIRSF PIRSF017082 1 320 8.1E-67 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 dqs_1530 8afa29bcf29c77b7214a4c1061885c3f 101 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 96 3.8E-23 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like dqs_1530 8afa29bcf29c77b7214a4c1061885c3f 101 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 101 20.67 T 11-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 dqs_1068 18927189f68a5e1850bf5467e3431e44 188 Pfam PF08747 Domain of unknown function (DUF1788) 97 173 5.6E-9 T 11-10-2018 IPR014858 Protein of unknown function DUF1788 dqs_2877 bd293b016624772b555219fad842af83 98 SUPERFAMILY SSF101498 10 90 8.24E-18 T 11-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily dqs_2877 bd293b016624772b555219fad842af83 98 Pfam PF04316 Anti-sigma-28 factor, FlgM 34 88 6.0E-17 T 11-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal dqs_2877 bd293b016624772b555219fad842af83 98 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 90 1.2E-23 T 11-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 dqs_0387 4855fba398b5d725bf08f05a9810e7ad 487 Pfam PF00474 Sodium:solute symporter family 30 426 1.1E-43 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 dqs_0387 4855fba398b5d725bf08f05a9810e7ad 487 Gene3D G3DSA:1.20.1730.10 9 480 5.4E-76 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily dqs_0387 4855fba398b5d725bf08f05a9810e7ad 487 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 408 428 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site dqs_4025 1b32315f0010605423a8dc0da16de447 125 Pfam PF13665 Domain of unknown function (DUF4150) 19 125 5.4E-42 T 11-10-2018 IPR025425 Domain of unknown function DUF4150 dqs_2357 3e2bc02b2db4bd74f5596d017b921237 157 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 25 153 4.3E-51 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 dqs_2357 3e2bc02b2db4bd74f5596d017b921237 157 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 9 155 32.139 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 dqs_2288 e687e23d7836dd32b2b18f3b3ee705b0 405 SUPERFAMILY SSF50939 52 363 3.47E-16 T 11-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 dqs_2288 e687e23d7836dd32b2b18f3b3ee705b0 405 Gene3D G3DSA:2.120.10.10 41 252 6.2E-6 T 11-10-2018 dqs_0339 a9a6221751360a42877409da58382765 267 Pfam PF11227 Protein of unknown function (DUF3025) 63 266 2.9E-73 T 11-10-2018 IPR021390 Protein of unknown function DUF3025 dqs_0835 2ddc0d098cb092fa498a45d122c2b5c3 655 Pfam PF00350 Dynamin family 56 254 1.8E-13 T 11-10-2018 IPR022812 Dynamin superfamily dqs_0835 2ddc0d098cb092fa498a45d122c2b5c3 655 SUPERFAMILY SSF52540 42 317 7.81E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2103 01825b07440c18503135ecdba1f5afd6 288 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 38 176 2.2E-7 T 11-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 dqs_3054 7e562defde25aa1877fc3da79a2a6840 155 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 18 86 4.9E-19 T 11-10-2018 IPR013362 Pilus modification type IV, PilV dqs_3054 7e562defde25aa1877fc3da79a2a6840 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 15 38 6.6E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3054 7e562defde25aa1877fc3da79a2a6840 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 18 37 2.0E-4 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site dqs_3808 96d3d957ace29b73a126998e11a6a257 222 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 222 32.316 T 11-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3808 96d3d957ace29b73a126998e11a6a257 222 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 19 192 7.1E-50 T 11-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 dqs_3808 96d3d957ace29b73a126998e11a6a257 222 Pfam PF00156 Phosphoribosyl transferase domain 45 165 2.3E-12 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 dqs_3808 96d3d957ace29b73a126998e11a6a257 222 SUPERFAMILY SSF53271 8 216 4.12E-45 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like dqs_3808 96d3d957ace29b73a126998e11a6a257 222 Gene3D G3DSA:3.40.50.2020 9 218 6.4E-67 T 11-10-2018 dqs_0061 c6b841ce41a1a7575eef736a05617361 184 SUPERFAMILY SSF50182 105 179 8.5E-9 T 11-10-2018 IPR010920 LSM domain superfamily dqs_0061 c6b841ce41a1a7575eef736a05617361 184 Pfam PF00924 Mechanosensitive ion channel 60 174 4.1E-12 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 dqs_3922 6da7e7cce0d4f9d975a55b1d70bd8865 140 SUPERFAMILY SSF54637 1 137 2.67E-24 T 11-10-2018 IPR029069 HotDog domain superfamily dqs_3922 6da7e7cce0d4f9d975a55b1d70bd8865 140 Gene3D G3DSA:3.10.129.10 2 140 3.9E-22 T 11-10-2018 dqs_3922 6da7e7cce0d4f9d975a55b1d70bd8865 140 Pfam PF13279 Thioesterase-like superfamily 24 138 2.1E-13 T 11-10-2018 dqs_1529 45b54f0e3a21e6280870b4e5aec57236 200 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 19 165 1.3E-39 T 11-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 dqs_1529 45b54f0e3a21e6280870b4e5aec57236 200 Gene3D G3DSA:1.20.120.1200 5 168 7.3E-45 T 11-10-2018 dqs_2914 fbb29c72fa0c61f29445d5ba95875d41 286 SUPERFAMILY SSF109604 13 280 1.7E-55 T 11-10-2018 dqs_2914 fbb29c72fa0c61f29445d5ba95875d41 286 Pfam PF08668 HDOD domain 18 209 7.0E-47 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD dqs_2914 fbb29c72fa0c61f29445d5ba95875d41 286 Gene3D G3DSA:1.10.3210.10 12 283 1.4E-55 T 11-10-2018 dqs_1695 1ec0a00820052782a99d0a9a6559fc94 325 Gene3D G3DSA:1.10.3720.10 106 318 4.2E-13 T 11-10-2018 IPR035906 MetI-like superfamily dqs_1695 1ec0a00820052782a99d0a9a6559fc94 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 323 1.3E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_1695 1ec0a00820052782a99d0a9a6559fc94 325 SUPERFAMILY SSF161098 109 306 2.75E-11 T 11-10-2018 IPR035906 MetI-like superfamily dqs_4072 8028c474845a6c058ab4dc2edcd9903a 169 Gene3D G3DSA:1.10.8.640 27 108 1.5E-30 T 11-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily dqs_4072 8028c474845a6c058ab4dc2edcd9903a 169 Pfam PF03918 Cytochrome C biogenesis protein 23 156 1.3E-49 T 11-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family dqs_2290 feed48fa3962871c69949e64aed61788 130 Pfam PF11162 Protein of unknown function (DUF2946) 12 127 3.4E-18 T 11-10-2018 IPR021333 Protein of unknown function DUF2946 dqs_3512 9d6f345795fa5256311417f538e62cb6 102 SUPERFAMILY SSF141371 7 66 2.86E-5 T 11-10-2018 dqs_1813 1a0d754cca91a274147d9c62fcf66b4d 179 Gene3D G3DSA:3.40.50.150 2 166 1.7E-23 T 11-10-2018 dqs_1813 1a0d754cca91a274147d9c62fcf66b4d 179 SUPERFAMILY SSF53335 6 167 4.89E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase dqs_1813 1a0d754cca91a274147d9c62fcf66b4d 179 Pfam PF13489 Methyltransferase domain 10 95 3.9E-8 T 11-10-2018 dqs_0287 e5d1bda76a23da4830fbce82cf521001 146 Pfam PF11304 Protein of unknown function (DUF3106) 34 140 1.4E-7 T 11-10-2018 IPR021455 Protein of unknown function DUF3106 dqs_2987 f6ebcd03b433831c296491b286956e80 138 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 116 1.2E-21 T 11-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like dqs_2987 f6ebcd03b433831c296491b286956e80 138 Gene3D G3DSA:3.10.490.10 1 106 1.5E-31 T 11-10-2018 dqs_2987 f6ebcd03b433831c296491b286956e80 138 SUPERFAMILY SSF110857 5 115 4.05E-20 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily dqs_1328 4799934fa801f06a5e17a5dec035ba4f 312 SUPERFAMILY SSF56935 174 272 8.79E-5 T 11-10-2018 dqs_1328 4799934fa801f06a5e17a5dec035ba4f 312 Pfam PF13557 Putative MetA-pathway of phenol degradation 77 307 7.8E-38 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative dqs_3163 4deec10577ac2dbcfc63422a7b36c6b0 235 Gene3D G3DSA:3.90.70.10 47 200 1.2E-35 T 11-10-2018 dqs_3163 4deec10577ac2dbcfc63422a7b36c6b0 235 Pfam PF03412 Peptidase C39 family 58 194 1.7E-24 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 dqs_0761 070dd060040fd25eb6c8a09c08d60281 286 Pfam PF04228 Putative neutral zinc metallopeptidase 1 281 3.6E-120 T 11-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative dqs_0761 070dd060040fd25eb6c8a09c08d60281 286 SUPERFAMILY SSF55486 141 219 3.79E-5 T 11-10-2018 dqs_0416 be267ad7d76dfce3af5d416db22e7147 180 Gene3D G3DSA:2.40.50.180 41 154 2.0E-42 T 11-10-2018 dqs_0416 be267ad7d76dfce3af5d416db22e7147 180 SMART SM00260 18 159 8.6E-39 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_0416 be267ad7d76dfce3af5d416db22e7147 180 Pfam PF01584 CheW-like domain 22 162 5.0E-40 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 dqs_0416 be267ad7d76dfce3af5d416db22e7147 180 SUPERFAMILY SSF50341 15 164 1.44E-40 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 dqs_0416 be267ad7d76dfce3af5d416db22e7147 180 Gene3D G3DSA:2.30.30.40 24 153 2.0E-42 T 11-10-2018 dqs_0862 896deb8ebd40185e00f8a92f3ca0b911 192 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 11 182 7.3E-29 T 11-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related dqs_0862 896deb8ebd40185e00f8a92f3ca0b911 192 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 6 183 2.0E-46 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 dqs_2510 1cd275cce61460b4b511e44f28e21894 275 SUPERFAMILY SSF143631 3 261 1.57E-37 T 11-10-2018 IPR003374 ApbE-like superfamily dqs_2510 1cd275cce61460b4b511e44f28e21894 275 Gene3D G3DSA:3.10.520.20 2 263 1.3E-28 T 11-10-2018 dqs_2510 1cd275cce61460b4b511e44f28e21894 275 Pfam PF02424 ApbE family 6 249 2.4E-23 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 dqs_1911 0b579765f26853e29b0a92364c5d1ed3 1204 Pfam PF05359 Domain of Unknown Function (DUF748) 509 652 1.4E-16 T 11-10-2018 IPR008023 Protein of unknown function DUF748 dqs_1911 0b579765f26853e29b0a92364c5d1ed3 1204 Pfam PF05359 Domain of Unknown Function (DUF748) 167 316 2.7E-15 T 11-10-2018 IPR008023 Protein of unknown function DUF748 dqs_1911 0b579765f26853e29b0a92364c5d1ed3 1204 Pfam PF05359 Domain of Unknown Function (DUF748) 734 880 4.3E-30 T 11-10-2018 IPR008023 Protein of unknown function DUF748 dqs_3259 f49bedda1b92f5127c12d2be8aae1778 195 Pfam PF13511 Domain of unknown function (DUF4124) 12 62 2.6E-14 T 11-10-2018 IPR025392 Domain of unknown function DUF4124 dqs_3883 797ae3f213645b7d38890c8549ec090b 365 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 338 2.9E-45 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_2390 19f488339eb1be70a832b06870fcdb9b 183 Pfam PF07291 Methylamine utilisation protein MauE 4 164 4.9E-21 T 11-10-2018 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 172 200 - T 11-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 PRINTS PR00812 Bacterial general secretion pathway protein F signature 392 411 3.2E-19 T 11-10-2018 IPR003004 GspF/PilC family dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 PRINTS PR00812 Bacterial general secretion pathway protein F signature 172 200 3.2E-19 T 11-10-2018 IPR003004 GspF/PilC family dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 PRINTS PR00812 Bacterial general secretion pathway protein F signature 376 390 3.2E-19 T 11-10-2018 IPR003004 GspF/PilC family dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 PRINTS PR00812 Bacterial general secretion pathway protein F signature 73 85 3.2E-19 T 11-10-2018 IPR003004 GspF/PilC family dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 Gene3D G3DSA:1.20.81.30 264 374 7.8E-30 T 11-10-2018 dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 Gene3D G3DSA:1.20.81.30 63 179 4.7E-31 T 11-10-2018 dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 Pfam PF00482 Type II secretion system (T2SS), protein F 77 200 2.1E-31 T 11-10-2018 IPR018076 Type II secretion system F domain dqs_3372 f17a58f64dcb284c4a4fe52f525d5913 411 Pfam PF00482 Type II secretion system (T2SS), protein F 281 403 7.4E-30 T 11-10-2018 IPR018076 Type II secretion system F domain dqs_3344 672ff9bb9a28dccd4d05e2c56ddc3d27 286 Gene3D G3DSA:2.120.10.30 39 286 1.2E-12 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like dqs_3344 672ff9bb9a28dccd4d05e2c56ddc3d27 286 Pfam PF03088 Strictosidine synthase 144 191 1.1E-4 T 11-10-2018 IPR018119 Strictosidine synthase, conserved region GO:0009058|GO:0016844 dqs_3344 672ff9bb9a28dccd4d05e2c56ddc3d27 286 SUPERFAMILY SSF101898 44 284 9.68E-19 T 11-10-2018 dqs_1820 a5b0d865573965d403b5e57094a5591e 175 Gene3D G3DSA:3.90.420.10 48 172 5.1E-6 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 dqs_1820 a5b0d865573965d403b5e57094a5591e 175 Pfam PF00174 Oxidoreductase molybdopterin binding domain 78 148 6.3E-8 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 dqs_1820 a5b0d865573965d403b5e57094a5591e 175 SUPERFAMILY SSF56524 52 173 1.7E-18 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 dqs_1438 95dc50e4b6d68a3b49c1886fa18bc5a7 304 SUPERFAMILY SSF54427 181 303 1.49E-11 T 11-10-2018 IPR032710 NTF2-like domain superfamily dqs_1438 95dc50e4b6d68a3b49c1886fa18bc5a7 304 Pfam PF04280 Tim44-like domain 180 302 7.0E-16 T 11-10-2018 IPR007379 Tim44-like domain dqs_1438 95dc50e4b6d68a3b49c1886fa18bc5a7 304 SMART SM00978 171 302 6.5E-47 T 11-10-2018 IPR007379 Tim44-like domain dqs_3359 6f933fdfb99b11f6ec61cbcf697fd4a2 125 SMART SM00905 4 113 6.4E-34 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 dqs_3359 6f933fdfb99b11f6ec61cbcf697fd4a2 125 TIGRFAM TIGR00526 folB_dom: FolB domain 1 115 2.4E-23 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 dqs_3359 6f933fdfb99b11f6ec61cbcf697fd4a2 125 Gene3D G3DSA:3.30.1130.10 1 118 2.9E-31 T 11-10-2018 dqs_3359 6f933fdfb99b11f6ec61cbcf697fd4a2 125 SUPERFAMILY SSF55620 1 115 9.45E-30 T 11-10-2018 dqs_3359 6f933fdfb99b11f6ec61cbcf697fd4a2 125 Pfam PF02152 Dihydroneopterin aldolase 4 111 2.6E-25 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 dqs_3457 0a1ba338ff123f2f18bfbb7cbbaa0ad4 114 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 21 111 1.4E-38 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain dqs_3457 0a1ba338ff123f2f18bfbb7cbbaa0ad4 114 SUPERFAMILY SSF54534 4 113 1.73E-47 T 11-10-2018 dqs_3457 0a1ba338ff123f2f18bfbb7cbbaa0ad4 114 Gene3D G3DSA:3.10.50.40 1 114 2.2E-51 T 11-10-2018 dqs_4119 c16003b210646f1b658a736f6d965eb1 240 Gene3D G3DSA:3.40.470.10 1 240 1.4E-97 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_4119 c16003b210646f1b658a736f6d965eb1 240 SUPERFAMILY SSF52141 4 237 1.21E-59 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 dqs_2513 2255dcc0721e64056fb710b4762631f2 147 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 9 142 9.2E-14 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 dqs_1069 0ba7a51b03406d00354547637a78ed0d 1153 SUPERFAMILY SSF52540 48 336 2.86E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_2529 deae134662f284c5a528c2d7c5df1083 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 252 1.7E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 dqs_2529 deae134662f284c5a528c2d7c5df1083 264 Gene3D G3DSA:1.10.3720.10 61 253 4.0E-24 T 11-10-2018 IPR035906 MetI-like superfamily dqs_2529 deae134662f284c5a528c2d7c5df1083 264 SUPERFAMILY SSF161098 61 244 3.01E-32 T 11-10-2018 IPR035906 MetI-like superfamily dqs_0983 966f4edb130599de3afa814299bec39a 221 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 215 3.0E-44 T 11-10-2018 IPR006214 Bax inhibitor 1-related dqs_3023 3bc0ccb054479d3fdf3e2ad145b688d1 63 Pfam PF11127 Protein of unknown function (DUF2892) 1 60 9.2E-23 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 dqs_3488 5a65e75777bb87480ad7099e54ac7582 673 Pfam PF00884 Sulfatase 289 578 1.3E-46 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 dqs_3488 5a65e75777bb87480ad7099e54ac7582 673 SUPERFAMILY SSF53649 287 658 1.83E-72 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 dqs_3488 5a65e75777bb87480ad7099e54ac7582 673 Gene3D G3DSA:3.40.720.10 278 583 1.0E-65 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 dqs_3972 8e97f710d60d10a4e3dcb373a8fb2bca 285 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 273 4.8E-32 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_0694 516c4977a4eaae8a8ac39b55f0e809df 140 SUPERFAMILY SSF52172 17 132 1.51E-7 T 11-10-2018 IPR011006 CheY-like superfamily dqs_0694 516c4977a4eaae8a8ac39b55f0e809df 140 Gene3D G3DSA:3.40.50.12740 18 140 3.2E-8 T 11-10-2018 dqs_3491 7ed62b5f81666211849deeaefc2b299d 275 SUPERFAMILY SSF54523 214 265 3.92E-5 T 11-10-2018 dqs_3112 9f3463e20d007bd78ddfe38352b08788 330 Gene3D G3DSA:3.60.15.10 36 276 1.9E-48 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_3112 9f3463e20d007bd78ddfe38352b08788 330 TIGRFAM TIGR04558 SoxH_rel_PQQ_1: quinoprotein relay system zinc metallohydrolase 1 41 324 1.6E-127 T 11-10-2018 IPR030811 Quinoprotein relay system zinc metallohydrolase 1 dqs_3112 9f3463e20d007bd78ddfe38352b08788 330 SMART SM00849 72 252 1.2E-21 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3112 9f3463e20d007bd78ddfe38352b08788 330 Pfam PF00753 Metallo-beta-lactamase superfamily 70 252 3.0E-21 T 11-10-2018 IPR001279 Metallo-beta-lactamase dqs_3112 9f3463e20d007bd78ddfe38352b08788 330 SUPERFAMILY SSF56281 11 321 8.96E-62 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_1146 227be609f5474a305314f548843d88ea 273 Pfam PF01435 Peptidase family M48 90 257 3.3E-33 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 dqs_0683 fda9d2d055351519a5b117a7af3bcc8c 253 Pfam PF01618 MotA/TolQ/ExbB proton channel family 98 212 1.6E-38 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel dqs_4023 5414d0c0ddb98296e566fdce1a2e34c1 335 Pfam PF14412 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH 100 247 4.7E-5 T 11-10-2018 IPR032871 AHH domain-containing protein dqs_3118 62c4c35ed30cf04b1df1d299eb6ad2c9 360 SUPERFAMILY SSF52980 232 280 2.25E-6 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 dqs_3859 50cd10f8599999f991c2897294c0821c 122 SUPERFAMILY SSF54593 12 118 1.35E-18 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_3859 50cd10f8599999f991c2897294c0821c 122 Gene3D G3DSA:3.10.180.10 3 122 1.4E-38 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase dqs_2349 633103792632f8c8f8779f5aa0629fc5 310 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 268 1.1E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_2113 474fc8ff64cba43735cf58020bde1747 252 SUPERFAMILY SSF53681 150 210 1.11E-6 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 dqs_2113 474fc8ff64cba43735cf58020bde1747 252 Gene3D G3DSA:3.40.50.12500 3 246 1.4E-62 T 11-10-2018 dqs_3822 f1a32730481c7192c4417a3f18252fae 342 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 314 3.3E-49 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 dqs_3822 f1a32730481c7192c4417a3f18252fae 342 Gene3D G3DSA:3.40.190.170 26 342 2.6E-102 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily dqs_1786 e649663ca6d63704fdaa5e3e1d757ee7 596 Gene3D G3DSA:3.30.420.240 369 562 9.2E-7 T 11-10-2018 dqs_1786 e649663ca6d63704fdaa5e3e1d757ee7 596 Gene3D G3DSA:3.40.50.300 136 324 3.0E-10 T 11-10-2018 dqs_0592 31195322c0d92cc8aaee0319ab95db12 200 SUPERFAMILY SSF161266 9 158 9.94E-8 T 11-10-2018 dqs_1105 f80c8e6359827e2c6b1d63fab6a0eb89 102 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 7 92 2.8E-30 T 11-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 dqs_1920 6ef1c87a5b6ae3ed83050451a897270a 135 SUPERFAMILY SSF109635 3 87 4.05E-7 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily dqs_1920 6ef1c87a5b6ae3ed83050451a897270a 135 Gene3D G3DSA:1.20.120.910 1 126 1.9E-26 T 11-10-2018 dqs_1920 6ef1c87a5b6ae3ed83050451a897270a 135 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 87 121 2.5E-14 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 dqs_1920 6ef1c87a5b6ae3ed83050451a897270a 135 SUPERFAMILY SSF57716 89 123 1.3E-9 T 11-10-2018 dqs_1464 8ee63504c1d9845c817c04d782997912 57 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 8 45 2.2E-7 T 11-10-2018 IPR008621 Cbb3-type cytochrome oxidase component dqs_3437 f7aed72f5fd7019341c2c7b27dd8695e 283 Gene3D G3DSA:1.10.287.70 2 71 6.0E-19 T 11-10-2018 dqs_3437 f7aed72f5fd7019341c2c7b27dd8695e 283 Gene3D G3DSA:1.20.120.80 72 283 1.7E-68 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3437 f7aed72f5fd7019341c2c7b27dd8695e 283 Pfam PF00510 Cytochrome c oxidase subunit III 8 282 4.2E-62 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3437 f7aed72f5fd7019341c2c7b27dd8695e 283 SUPERFAMILY SSF81452 5 283 9.94E-84 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 dqs_3402 7818a3f1d46142120563600b2b007042 496 Gene3D G3DSA:2.60.120.200 273 491 8.6E-22 T 11-10-2018 dqs_0072 ea6a3a642592153cc89d89cba71d0593 449 Pfam PF13534 4Fe-4S dicluster domain 36 111 5.5E-6 T 11-10-2018 dqs_2449 0848efda8e900fcc0703ec8737c1c23b 207 Gene3D G3DSA:3.90.1480.20 8 204 3.5E-11 T 11-10-2018 IPR038578 GT29-like superfamiliy Reactome: R-HSA-4085001 dqs_2449 0848efda8e900fcc0703ec8737c1c23b 207 Pfam PF00777 Glycosyltransferase family 29 (sialyltransferase) 24 75 2.8E-6 T 11-10-2018 IPR001675 Glycosyl transferase family 29 GO:0006486|GO:0008373 Reactome: R-HSA-4085001 dqs_3829 03ad718cb5d885f0162740c76ddbacf0 278 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 37 248 1.3E-32 T 11-10-2018 dqs_3829 03ad718cb5d885f0162740c76ddbacf0 278 SUPERFAMILY SSF53850 40 235 1.43E-17 T 11-10-2018 dqs_3829 03ad718cb5d885f0162740c76ddbacf0 278 Gene3D G3DSA:3.40.190.10 36 237 9.7E-22 T 11-10-2018 dqs_3829 03ad718cb5d885f0162740c76ddbacf0 278 Gene3D G3DSA:3.40.190.10 105 205 9.7E-22 T 11-10-2018 dqs_0569 bb2a0e7ffac6c87759675a33fdd0f475 135 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 119 3.2E-22 T 11-10-2018 dqs_2480 e38a3228f3b77b6ff9e70587f56ee358 144 Pfam PF10865 Domain of unknown function (DUF2703) 4 120 1.5E-39 T 11-10-2018 IPR021219 Protein of unknown function DUF2703 dqs_4127 94a13ac4de186e6b177ecc8655866c0e 204 Pfam PF14334 Domain of unknown function (DUF4390) 37 195 3.3E-59 T 11-10-2018 IPR025500 Protein of unknown function DUF4390 dqs_1038 39b600863911ea3286cf511eea1fbbbd 146 PIRSF PIRSF005276 1 146 3.5E-47 T 11-10-2018 IPR007481 Stringent starvation protein B dqs_1038 39b600863911ea3286cf511eea1fbbbd 146 Gene3D G3DSA:2.30.30.220 1 123 8.4E-45 T 11-10-2018 IPR036760 SspB-like superfamily dqs_1038 39b600863911ea3286cf511eea1fbbbd 146 SUPERFAMILY SSF101738 3 106 1.27E-43 T 11-10-2018 IPR036760 SspB-like superfamily dqs_1038 39b600863911ea3286cf511eea1fbbbd 146 Pfam PF04386 Stringent starvation protein B 5 146 1.5E-34 T 11-10-2018 IPR007481 Stringent starvation protein B dqs_2798 078d9a664dd9f48dfd3173985df2ec32 232 Pfam PF01988 VIT family 18 226 3.4E-54 T 11-10-2018 IPR008217 Ccc1 family dqs_3513 741cbb80cab6ee0672c0bdfb2c19434f 72 Pfam PF11127 Protein of unknown function (DUF2892) 4 63 1.2E-16 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 dqs_1087 057036afc78ea4d15e4de2c5e58848ad 100 TIGRFAM TIGR04353 PqqD_rel_X: PqqD family protein, HPr-rel-A system 27 96 6.5E-13 T 11-10-2018 IPR027599 PqqD family protein, HPr-rel-A system dqs_0071 882f41ec7610fa45a148a3175eca9bc8 564 Pfam PF09909 Uncharacterized protein conserved in bacteria (DUF2138) 11 557 5.5E-203 T 11-10-2018 IPR018671 Protein of unknown function DUF2138 dqs_2726 f2a084b6995a3c6cf18dbf64b09a4033 428 Pfam PF00999 Sodium/hydrogen exchanger family 8 413 4.4E-27 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 dqs_1273 32505236b562fdc51de71f76739133b2 548 Pfam PF02652 L-lactate permease 16 539 1.2E-219 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 dqs_1273 32505236b562fdc51de71f76739133b2 548 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 5 541 6.0E-230 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 dqs_1261 f007a1729209e3ef76495acb7cba8016 546 Pfam PF03092 BT1 family 357 538 2.9E-12 T 11-10-2018 IPR039309 Biopterin transporter family dqs_1507 2ff54b09299a7af76493966b4bb2b437 156 Pfam PF13664 Domain of unknown function (DUF4149) 11 108 8.6E-19 T 11-10-2018 IPR025423 Domain of unknown function DUF4149 dqs_0801 6908edac6c1a9e0173a8ea3bb2f5a11d 284 Pfam PF05673 Protein of unknown function (DUF815) 30 281 1.6E-107 T 11-10-2018 IPR008533 Domain of unknown function DUF815 dqs_0801 6908edac6c1a9e0173a8ea3bb2f5a11d 284 Gene3D G3DSA:3.40.50.300 46 235 1.2E-10 T 11-10-2018 dqs_0801 6908edac6c1a9e0173a8ea3bb2f5a11d 284 SUPERFAMILY SSF52540 47 187 1.57E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase dqs_1342 84a629fcc93f760ecd0b9ab4ef86f532 197 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 49 7.5E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal dqs_0472 97f19708b526d110dcb6bb48946ec38a 161 SUPERFAMILY SSF47175 84 160 1.16E-7 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 dqs_1553 15764784e032bf8724bc268cbf2eeb06 392 Pfam PF05762 VWA domain containing CoxE-like protein 184 272 7.0E-11 T 11-10-2018 IPR008912 Uncharacterised protein family CoxE-like dqs_0797 2aff62824e6f15ea82b5dd3819cb5bf0 311 SUPERFAMILY SSF51905 9 301 7.69E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0797 2aff62824e6f15ea82b5dd3819cb5bf0 311 Pfam PF01494 FAD binding domain 72 258 8.8E-20 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 dqs_0797 2aff62824e6f15ea82b5dd3819cb5bf0 311 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 3.8E-11 T 11-10-2018 dqs_0797 2aff62824e6f15ea82b5dd3819cb5bf0 311 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 214 230 3.8E-11 T 11-10-2018 dqs_0797 2aff62824e6f15ea82b5dd3819cb5bf0 311 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 75 90 3.8E-11 T 11-10-2018 dqs_0797 2aff62824e6f15ea82b5dd3819cb5bf0 311 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 307 3.6E-91 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 dqs_0797 2aff62824e6f15ea82b5dd3819cb5bf0 311 Gene3D G3DSA:3.50.50.60 178 310 6.5E-30 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0797 2aff62824e6f15ea82b5dd3819cb5bf0 311 Gene3D G3DSA:3.50.50.60 1 177 8.8E-26 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2797 9b87f5e397af0d80b15b2ab96246c0ec 95 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 23 77 2.2E-9 T 11-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 dqs_0170 bb90f47bb2aecfbca153ca6ac14ca7ca 192 Pfam PF02036 SCP-2 sterol transfer family 10 102 6.0E-7 T 11-10-2018 IPR003033 SCP2 sterol-binding domain dqs_0705 2269fcfe13eb069fe37239f2cda7ee0a 268 Pfam PF01925 Sulfite exporter TauE/SafE 12 262 1.4E-46 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 dqs_2776 4673980f4430a70617295596b2c2bdcd 239 Pfam PF14234 Domain of unknown function (DUF4336) 24 161 7.5E-15 T 11-10-2018 IPR025638 Protein of unknown function DUF4336 dqs_2776 4673980f4430a70617295596b2c2bdcd 239 SUPERFAMILY SSF56281 16 237 7.64E-18 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_2776 4673980f4430a70617295596b2c2bdcd 239 Gene3D G3DSA:3.60.15.10 60 238 1.1E-5 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like dqs_2322 55e279365c8b445a0ea16eef72a8780b 94 Gene3D G3DSA:3.30.70.2340 1 94 1.7E-34 T 11-10-2018 dqs_2322 55e279365c8b445a0ea16eef72a8780b 94 Pfam PF12112 Protein of unknown function (DUF3579) 5 89 8.9E-36 T 11-10-2018 IPR021969 Protein of unknown function DUF3579 dqs_2857 359935d16627ed43b89820db6d1a6184 193 Pfam PF03748 Flagellar basal body-associated protein FliL 84 193 4.5E-23 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 dqs_2902 ddee119624c1d0950e3d0e5d7388679b 198 Pfam PF04519 Polymer-forming cytoskeletal 74 169 1.3E-17 T 11-10-2018 IPR007607 Bactofilin A/B dqs_0545 ce6c522547460f4563bbb24afaede9b9 136 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 6 125 1.9E-17 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 dqs_0545 ce6c522547460f4563bbb24afaede9b9 136 Gene3D G3DSA:1.20.120.50 2 130 4.7E-19 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_0545 ce6c522547460f4563bbb24afaede9b9 136 SUPERFAMILY SSF47188 4 126 4.19E-22 T 11-10-2018 IPR035938 Hemerythrin-like superfamily dqs_2984 d2372d0b9778a0b1b9b6d0cd8d5289e8 309 Pfam PF13557 Putative MetA-pathway of phenol degradation 75 305 2.4E-35 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative dqs_2514 f0fa35b277e1e27789242fa34b5a1dc7 495 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 21 439 1.2E-142 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane dqs_0622 618198fbf4de6d75b359abb85e054e64 112 Gene3D G3DSA:1.20.120.330 1 96 1.6E-8 T 11-10-2018 dqs_3152 01513ea88e4d606450029b00eb676c70 265 Pfam PF12570 Protein of unknown function (DUF3750) 58 186 8.0E-52 T 11-10-2018 IPR022224 Protein of unknown function DUF3750 dqs_2569 2f84c8cbfa6a5aa313de2ff4aeaa1401 167 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 160 1.6E-25 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ dqs_0618 d39e9d046b24d4c90dc1827cf2e78d26 533 Pfam PF06074 Protein of unknown function (DUF935) 3 527 2.1E-153 T 11-10-2018 IPR009279 Protein of unknown function DUF935 dqs_1905 9ef479260337bceb3252b754a6408f9a 215 Pfam PF09990 Predicted membrane protein (DUF2231) 95 206 1.3E-17 T 11-10-2018 IPR019251 Domain of unknown function DUF2231, transmembrane dqs_0231 701678f1565f2141975f208d4f12e225 430 Pfam PF01266 FAD dependent oxidoreductase 26 387 1.8E-56 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 dqs_0231 701678f1565f2141975f208d4f12e225 430 SUPERFAMILY SSF51905 25 406 1.29E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_0231 701678f1565f2141975f208d4f12e225 430 Gene3D G3DSA:3.30.9.10 119 351 3.6E-74 T 11-10-2018 dqs_0231 701678f1565f2141975f208d4f12e225 430 Gene3D G3DSA:3.50.50.60 26 389 3.6E-74 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily dqs_2931 a5060705e5ca2eb5894c14352fab0b87 560 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 501 2.2E-118 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit dqs_0246 72c55f2b5b75071ca5da3e6bee9929e0 280 Pfam PF01618 MotA/TolQ/ExbB proton channel family 139 262 3.0E-36 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel dqs_1086 ff253270ab82232f71c4ec4dd255886e 286 SUPERFAMILY SSF53795 99 259 1.77E-12 T 11-10-2018 dqs_1086 ff253270ab82232f71c4ec4dd255886e 286 TIGRFAM TIGR04352 HprK_rel_A: HprK-related kinase A 5 284 5.8E-115 T 11-10-2018 IPR027600 HprK-related kinase A dqs_3101 72b195e07fa65a0ac32507b808416860 164 Pfam PF07681 DoxX 18 104 1.5E-22 T 11-10-2018 IPR032808 DoxX family dqs_1277 7e9395489664f7592ba4ef72059b5e0b 268 Pfam PF02754 Cysteine-rich domain 21 101 4.6E-11 T 11-10-2018 IPR004017 Cysteine-rich domain dqs_1277 7e9395489664f7592ba4ef72059b5e0b 268 Pfam PF02754 Cysteine-rich domain 149 233 2.9E-11 T 11-10-2018 IPR004017 Cysteine-rich domain dqs_2450 0beb6005743c2e898367b952b57f82a5 332 Pfam PF04230 Polysaccharide pyruvyl transferase 18 263 4.7E-13 T 11-10-2018 IPR007345 Polysaccharide pyruvyl transferase dqs_2572 0ff0c98f291c290372b12807f62d9401 307 Pfam PF13557 Putative MetA-pathway of phenol degradation 59 303 4.0E-68 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative dqs_3043 e191ecf38e6b51fe2f1ff5ce7e8aac6b 359 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 347 8.9E-59 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 dqs_3043 e191ecf38e6b51fe2f1ff5ce7e8aac6b 359 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 347 2.8E-116 T 11-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 dqs_2302 5f3756bb93cbf20f42268d5fed99d64d 389 Pfam PF11062 Protein of unknown function (DUF2863) 5 386 1.6E-169 T 11-10-2018 IPR021292 Protein of unknown function DUF2863 dqs_2995 962cfefd81ed0b40cb2ae567f38ab087 190 Pfam PF07681 DoxX 31 115 2.1E-17 T 11-10-2018 IPR032808 DoxX family dqs_0039 ae539ef3ec1f05a651f8b06382fd7a26 256 Pfam PF03741 Integral membrane protein TerC family 15 203 5.7E-49 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 dqs_0682 d67d2d818816ab1f64c45cef5a7db04e 138 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 136 1.6E-33 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 dqs_0682 d67d2d818816ab1f64c45cef5a7db04e 138 Gene3D G3DSA:3.30.420.270 63 132 2.0E-13 T 11-10-2018 dqs_3785 d9e648fb6125785334b05793e9393c84 255 Pfam PF01925 Sulfite exporter TauE/SafE 12 248 1.1E-31 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 dqs_2146 d0fbf5b961db383fb20920c76b0f5c0e 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 13 328 3.2E-14 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_0066 09964b0e893dd8be0d762dcb2f2b00e2 465 Pfam PF02687 FtsX-like permease family 357 457 1.5E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_0337 594644a50366a396a60d7a48524946cc 103 Pfam PF09350 Domain of unknown function (DUF1992) 9 75 4.1E-25 T 11-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain dqs_2932 62425a7ba28c9f002bc062d944084e9d 197 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 161 1.3E-25 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ dqs_0614 18c7c48b8ee719a96f41018301c829bd 166 Pfam PF08822 Protein of unknown function (DUF1804) 1 163 1.9E-59 T 11-10-2018 IPR014926 Bacteriophage D3112, Orf24 dqs_0247 2c7ec565e7e3422f3bd9331708c740b6 142 Gene3D G3DSA:3.30.420.270 63 133 9.1E-8 T 11-10-2018 dqs_0247 2c7ec565e7e3422f3bd9331708c740b6 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 15 137 4.4E-28 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 dqs_3155 8886afacdd2c04fa71b427e5c919ff67 326 Pfam PF13557 Putative MetA-pathway of phenol degradation 63 321 1.7E-63 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative dqs_4064 d93b838f8a03389fbc03698ac697349d 336 SUPERFAMILY SSF55298 197 325 6.75E-15 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 dqs_4064 d93b838f8a03389fbc03698ac697349d 336 Gene3D G3DSA:3.30.1330.40 203 327 4.2E-20 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 dqs_2108 89c5f28125bbe7ed23032309efcb60ad 422 Pfam PF07044 Protein of unknown function (DUF1329) 34 418 3.2E-74 T 11-10-2018 IPR010752 Protein of unknown function DUF1329 dqs_3000 8de041dbad0074fca7a57f6c602c9fa9 312 Gene3D G3DSA:3.40.50.410 75 287 6.5E-9 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_3000 8de041dbad0074fca7a57f6c602c9fa9 312 Pfam PF01882 Protein of unknown function DUF58 39 122 2.0E-19 T 11-10-2018 IPR002881 Domain of unknown function DUF58 dqs_3000 8de041dbad0074fca7a57f6c602c9fa9 312 SUPERFAMILY SSF53300 82 215 1.11E-9 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily dqs_1698 196d9063e96b3e0d39b88a174ca6edf8 193 Pfam PF07298 NnrU protein 6 191 2.4E-58 T 11-10-2018 IPR009915 NnrU domain dqs_2598 614d902ea6186ce7c04916d938f9e909 224 Pfam PF12779 YXWGXW repeat (2 copies) 58 82 2.8E-6 T 11-10-2018 IPR024447 YXWGXW repeat dqs_3807 10c0b05b432a4c1579a9ab33c3f5f5ba 225 Pfam PF13511 Domain of unknown function (DUF4124) 16 82 3.8E-7 T 11-10-2018 IPR025392 Domain of unknown function DUF4124 dqs_2772 8d42ca3fbf758851068d4d72bee3755c 206 Pfam PF16357 Putative PepSY_TM-like 11 183 5.4E-15 T 11-10-2018 IPR032307 Putative PepSY TM-like protein dqs_2561 851fb296eb9f3c1c5a8125468402d40b 396 Pfam PF05940 NnrS protein 22 390 1.0E-108 T 11-10-2018 IPR010266 NnrS dqs_1445 9ea27d1ffb0a13911501adcf525d2802 248 Pfam PF13391 HNH endonuclease 152 200 1.8E-6 T 11-10-2018 IPR003615 HNH nuclease dqs_2021 29741226784b2a7a0d1f5e240f6a388d 91 Pfam PF10734 Protein of unknown function (DUF2523) 14 80 2.0E-13 T 11-10-2018 IPR019670 Protein of unkown function DUF2523 dqs_3264 92eebcd69172260cad9422fac5b69d98 181 Pfam PF07209 Protein of unknown function (DUF1415) 5 172 8.8E-66 T 11-10-2018 IPR009858 Protein of unknown function DUF1415 dqs_2584 fd75931870fd082c4b1cd1440e121ae1 119 Pfam PF04663 Phenol hydroxylase conserved region 14 79 1.9E-36 T 11-10-2018 IPR006756 Phenol hydroxylase KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 dqs_2584 fd75931870fd082c4b1cd1440e121ae1 119 Gene3D G3DSA:3.10.20.560 16 118 1.0E-44 T 11-10-2018 dqs_3917 d51c9035ebf3b561bea8bb410b0583e7 429 Pfam PF07958 Protein of unknown function (DUF1688) 34 429 5.8E-144 T 11-10-2018 IPR012469 Protein of unknown function DUF1688 dqs_3405 161ee53f63f46203245a64f583fedd5f 101 Gene3D G3DSA:3.20.20.370 16 92 1.6E-8 T 11-10-2018 dqs_0994 558e354590f7497c859866f52ef9104c 215 Pfam PF09335 SNARE associated Golgi protein 49 174 6.9E-25 T 11-10-2018 IPR032816 SNARE associated Golgi protein dqs_1742 b4ac75f8a70621897f5efbc4983f6b4b 303 Gene3D G3DSA:3.40.1750.20 158 224 2.6E-60 T 11-10-2018 dqs_1742 b4ac75f8a70621897f5efbc4983f6b4b 303 Gene3D G3DSA:3.90.226.10 58 258 2.6E-60 T 11-10-2018 dqs_1742 b4ac75f8a70621897f5efbc4983f6b4b 303 Pfam PF01343 Peptidase family S49 122 267 1.1E-31 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 dqs_1742 b4ac75f8a70621897f5efbc4983f6b4b 303 SUPERFAMILY SSF52096 49 254 3.87E-39 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily dqs_0154 7b2161bbd9a56776da1c0561d6b93164 120 Pfam PF01934 Protein of unknown function DUF86 14 108 1.2E-22 T 11-10-2018 IPR008201 Protein of unknown function DUF86 dqs_0903 bd2a40cd264cc387d60bfa8726048132 399 Pfam PF12704 MacB-like periplasmic core domain 21 242 2.5E-36 T 11-10-2018 IPR025857 MacB-like periplasmic core domain dqs_0903 bd2a40cd264cc387d60bfa8726048132 399 Pfam PF02687 FtsX-like permease family 304 392 1.2E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 dqs_4021 cf58dba8811b929ea31dd476eab3dd70 344 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 22 313 8.3E-99 T 11-10-2018 IPR018683 Domain of unknown function DUF2169 dqs_1008 ebb8fee2f1bf99a0c16335b0db9072c5 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 6 59 3.2E-21 T 11-10-2018 IPR019201 Protein of unknown function DUF2065 dqs_3182 b265daaa9de656192076d6a2414a1bc8 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 300 1.4E-41 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_0209 9f64742db1145b5011a750953ca3c572 82 Pfam PF07769 psiF repeat 23 45 1.3E-4 T 11-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat dqs_4030 90b4036b710c8e2aad5164352f2f7aaa 217 Pfam PF13488 Glycine zipper 31 74 6.8E-9 T 11-10-2018 IPR039567 Glycine zipper domain dqs_1976 a3e50950fee9259042e53ca4bf8da745 154 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 153 2.7E-62 T 11-10-2018 IPR018729 Protein of unknown function DUF2269, transmembrane dqs_3014 9b5b288d6c48f7a683d070c6152c8c95 126 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 67 120 0.007 T 11-10-2018 IPR020358 Uncharacterised protein family Y4oB dqs_3014 9b5b288d6c48f7a683d070c6152c8c95 126 Pfam PF09722 Protein of unknown function (DUF2384) 75 124 5.7E-16 T 11-10-2018 IPR024467 Domain of unknown function DUF2384 dqs_0264 7b2766ae8fc4f8041f19a121dc7845eb 492 Pfam PF11067 Protein of unknown function (DUF2868) 173 468 2.3E-66 T 11-10-2018 IPR021296 Protein of unknown function DUF2868 dqs_0396 b3bc62c381e245666b47bbe13aa19cdd 139 SUPERFAMILY SSF141371 37 113 2.55E-6 T 11-10-2018 dqs_0396 b3bc62c381e245666b47bbe13aa19cdd 139 Pfam PF07238 PilZ domain 37 112 3.2E-5 T 11-10-2018 IPR009875 PilZ domain GO:0035438 dqs_1152 1c560be006924ff62675593956d8f8e4 209 Pfam PF02361 Cobalt transport protein 5 146 1.7E-8 T 11-10-2018 IPR003339 ABC/ECF transporter, transmembrane component dqs_1603 c58aed63f5b615cbf9ef3d388ea0e337 103 Gene3D G3DSA:3.30.70.120 3 103 8.1E-27 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal dqs_1603 c58aed63f5b615cbf9ef3d388ea0e337 103 SUPERFAMILY SSF54913 3 101 1.46E-19 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta dqs_0382 867eea9e1e5f4f7175b1b432e004e01f 191 Pfam PF01169 Uncharacterized protein family UPF0016 104 178 1.4E-22 T 11-10-2018 IPR001727 Gdt1 family dqs_0382 867eea9e1e5f4f7175b1b432e004e01f 191 Pfam PF01169 Uncharacterized protein family UPF0016 6 80 1.8E-19 T 11-10-2018 IPR001727 Gdt1 family dqs_3899 220e42f466df5f41b4c3984deb95330a 124 Pfam PF11142 Protein of unknown function (DUF2917) 10 66 1.6E-16 T 11-10-2018 IPR021317 Protein of unknown function DUF2917 dqs_0194 aaadf9615415b0ceb97093bf7ce2e4c2 225 Pfam PF13852 Protein of unknown function (DUF4197) 25 223 3.3E-72 T 11-10-2018 IPR025245 Protein of unknown function DUF4197 dqs_1236 f921a4a5039c2c2fe481cc29db1a12ee 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 293 1.9E-37 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_3911 08935cf8e55d59835123217da23082fa 480 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 455 5.2E-100 T 11-10-2018 IPR010352 Protein of unknown function DUF945 dqs_1399 66d111e6786ae4d246b3b3b9b60725db 531 Gene3D G3DSA:3.20.20.80 124 312 1.7E-13 T 11-10-2018 dqs_1399 66d111e6786ae4d246b3b3b9b60725db 531 SUPERFAMILY SSF51445 40 311 1.84E-52 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily dqs_1912 e212aee0031e28daff4395ef55e916f0 376 Pfam PF01594 AI-2E family transporter 41 354 2.0E-39 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like dqs_1986 9704c8dfd731a602c3078ae82ca2732a 562 Pfam PF06980 Protein of unknown function (DUF1302) 40 562 3.3E-138 T 11-10-2018 IPR010727 Protein of unknown function DUF1302 dqs_2122 cc974983219ff56ac6827da6240d6b0b 147 Pfam PF13924 Lipocalin-like domain 7 142 2.1E-37 T 11-10-2018 IPR024311 Lipocalin-like domain dqs_0598 4ade32742a8b122e86722b0772a705a6 145 Pfam PF06252 Protein of unknown function (DUF1018) 29 138 1.5E-13 T 11-10-2018 IPR009363 Bacteriophage Mu, Gp16 dqs_0070 67d85b29296708dc7634200264fa82be 227 Pfam PF06672 Protein of unknown function (DUF1175) 27 226 1.1E-72 T 11-10-2018 IPR009558 Protein of unknown function DUF1175 dqs_2386 57e25a3baaee7bc66a830a8ab7eff61d 459 Pfam PF07044 Protein of unknown function (DUF1329) 88 454 8.2E-133 T 11-10-2018 IPR010752 Protein of unknown function DUF1329 dqs_1345 014a494d1f36bfb77868387fa77da559 94 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 12 88 3.3E-22 T 11-10-2018 IPR011846 Cyd operon protein YbgE dqs_2767 d4aaadec71d905ee7fa7b1ca73d3527a 145 Pfam PF11026 Protein of unknown function (DUF2721) 15 139 3.8E-34 T 11-10-2018 IPR021279 Protein of unknown function DUF2721 dqs_1544 1f0b2dcca2ea2632dfb1c45713e86eac 266 Pfam PF09955 Predicted integral membrane protein (DUF2189) 74 195 5.4E-41 T 11-10-2018 IPR018692 Predicted integral membrane protein DUF2189 dqs_2460 43bcda012dfef7749af052a2af140cde 273 Pfam PF01618 MotA/TolQ/ExbB proton channel family 124 236 1.0E-35 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel dqs_3798 a83f95b51a4abc116d1a342d1ee62477 56 Pfam PF13627 Prokaryotic lipoprotein-attachment site 7 28 1.3E-8 T 11-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site dqs_0731 545308c5ed4e0904c079f2f07f8cad5d 183 Gene3D G3DSA:3.10.450.160 76 181 3.7E-10 T 11-10-2018 dqs_0820 f9c19009b6d644f42972db1a3417a674 541 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 60 220 4.9E-21 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like dqs_3813 f8b32ff55daaa89aa206746770f273a9 127 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 11 123 3.1E-15 T 11-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III dqs_0133 1755e9b9f4a9f35bb423789d6ac461b6 141 Pfam PF10861 Protein of Unknown function (DUF2784) 8 128 5.8E-35 T 11-10-2018 IPR021218 Protein of unknown function DUF2784 dqs_3183 34ee2cb47636fdbefa305f5d1fef4446 288 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 277 2.2E-41 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_1681 23a391ff012f6012b64cec451644bf8c 784 SUPERFAMILY SSF53474 73 410 1.14E-25 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_1681 23a391ff012f6012b64cec451644bf8c 784 Pfam PF11339 Protein of unknown function (DUF3141) 45 623 8.9E-282 T 11-10-2018 IPR024501 Protein of unknown function DUF3141 dqs_2844 629e82dfe784b995aea58b1dbde430f9 371 Pfam PF02120 Flagellar hook-length control protein FliK 297 369 2.2E-14 T 11-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal dqs_3316 639ca228cb130d055e3bdf73bfc29936 300 ProSitePatterns PS00018 EF-hand calcium-binding domain. 211 223 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site dqs_3587 f0336204fce887f39584b29bd028815a 355 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 330 1.7E-31 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 dqs_1827 d56505c1197e6567775bc696e43b848c 113 Hamap MF_02117 N(2)-fixation sustaining protein CowN [cowN]. 19 113 26.131 T 11-10-2018 IPR024899 Nitrogen fixation-sustaining protein CowN GO:0009399 dqs_2020 f648eb8767e17380a6bf5a0890743dec 495 Pfam PF05616 Neisseria meningitidis TspB protein 364 488 1.8E-8 T 11-10-2018 IPR008708 TspB virulence factor dqs_3284 425ed61d4916c6be398d243ec13bf713 136 Pfam PF12279 Protein of unknown function (DUF3619) 14 132 3.5E-28 T 11-10-2018 IPR022064 Protein of unknown function DUF3619 dqs_0407 72c52f32a677060680820074acb0108f 65 Pfam PF06945 Protein of unknown function (DUF1289) 5 52 3.0E-21 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 dqs_1586 e628582a369d32f62c7e888f604bfb0b 103 Pfam PF11333 Protein of unknown function (DUF3135) 4 80 3.9E-26 T 11-10-2018 IPR021482 Protein of unknown function DUF3135 dqs_0484 d867c4c1141b1f2c3d174c7e0d7e40ea 195 Pfam PF10975 Protein of unknown function (DUF2802) 122 186 5.0E-15 T 11-10-2018 IPR021244 Protein of unknown function DUF2802 dqs_0060 a839b55cdf29595305cdf3679e816663 370 Gene3D G3DSA:3.40.50.1820 249 369 1.9E-7 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0060 a839b55cdf29595305cdf3679e816663 370 SUPERFAMILY SSF53474 26 366 7.22E-75 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold dqs_0245 be1cff14ac6cf888af7ef21ab30cf5b0 407 Pfam PF07786 Protein of unknown function (DUF1624) 31 242 2.8E-16 T 11-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 dqs_3459 a266e50c4d6cbf18daa33458163b831d 1303 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 955 1302 1.2E-41 T 11-10-2018 IPR007452 Translocation and assembly module TamB dqs_0038 251ed6d4644572aa90cadaae3917e428 76 Pfam PF11391 Protein of unknown function (DUF2798) 11 69 5.7E-23 T 11-10-2018 IPR021529 Protein of unknown function DUF2798 dqs_2327 84af7ec2cb5920053b53b1e8e0396408 1199 Pfam PF05359 Domain of Unknown Function (DUF748) 583 736 2.4E-32 T 11-10-2018 IPR008023 Protein of unknown function DUF748 dqs_2327 84af7ec2cb5920053b53b1e8e0396408 1199 Pfam PF05359 Domain of Unknown Function (DUF748) 377 527 7.7E-17 T 11-10-2018 IPR008023 Protein of unknown function DUF748 dqs_2327 84af7ec2cb5920053b53b1e8e0396408 1199 Pfam PF05359 Domain of Unknown Function (DUF748) 808 954 2.7E-38 T 11-10-2018 IPR008023 Protein of unknown function DUF748 dqs_2327 84af7ec2cb5920053b53b1e8e0396408 1199 Pfam PF05359 Domain of Unknown Function (DUF748) 151 302 8.3E-25 T 11-10-2018 IPR008023 Protein of unknown function DUF748 dqs_3132 4211841a0d62c2df608e2301a658ca77 387 Pfam PF03929 PepSY-associated TM region 9 362 7.2E-54 T 11-10-2018 IPR005625 PepSY-associated TM protein dqs_0620 157e17f5d600a1e13ba3a056337893cd 176 Pfam PF05069 Phage virion morphogenesis family 11 169 1.7E-17 T 11-10-2018 IPR006522 Phage virion morphogensis protein dqs_2882 25ba1c08f7308f62fadb661da4d3cb0f 177 Pfam PF09361 Phasin protein 9 100 6.4E-5 T 11-10-2018 IPR018968 Phasin dqs_0359 17ad598ddaf3b184de4ac2c2c8af294f 151 Pfam PF13511 Domain of unknown function (DUF4124) 11 66 6.8E-11 T 11-10-2018 IPR025392 Domain of unknown function DUF4124