locus_tag	old_locus_tag	gene	Name	start	end	strand	product	note	type	ID	NCBI
azo0001	azo0001	dnaA	dnaA	1	1443	+	chromosomal replication initiator protein	Chromosomal replication initiator protein dnaA. Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication%3B it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5-TTATC(C/A)A(C/A)A-3. DnaA binds to ATP and to acidic phospholipids (By similarity). InterPro: Bacterial chromosomal replication initiator protein DnaA%3B~High confidence in function and specificity	gene	gene0	http://www.ncbi.nlm.nih.gov/gene/?term=azo0001
azo0002	azo0002	dnaN	dnaN	1502	2611	+	DNA-directed DNA polymerase	DNA polymerase III beta chain (EC 2.7.7.7). DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA It slides freely (bidirectional and ATP- independent) along duplex DNA (By similarity). InterPro: DNA polymerase III beta chain dnan: DNA polymerase III beta subunit%3B~High confidence in function and specificity	gene	gene1	http://www.ncbi.nlm.nih.gov/gene/?term=azo0002
azo0003	azo0003	gyrB	gyrB	2821	5310	+	DNA topoisomerase (ATP-hydrolysing)	DNA gyrase subunit B (EC 5.99.1.3). DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings including catenanes and knotted rings. InterPro: DNA topoisomerase II recJ: single-stranded-DNA-specific ex%3B~High confidence in function and specificity	gene	gene2	http://www.ncbi.nlm.nih.gov/gene/?term=azo0003
azo0004	azo0004	hsdM	hsdM	5505	7346	+	Site-specific DNA-methyltransferase (adenine-specific)	METHYLATION OF SPECIFIC ADENINE RESIDUES%3B REQUIRED FOR BOTH RESTRICTION AND MODIFICATION ACTIVITIES (BY SIMILARITY)%2C TREMBL:Q7VCN2 (55%25 identity). InterPro (IPR002296): N6 adenine-specific DNA methyltransferase%2CN12 class. InterPro (IPR003356): N-6 DNA methylase. InterPro (IPR003665): Type I restriction-modification system M subunit. Pfam (PF02384): N-6 DNA Methylase. Pfam (PF02506): Type I restriction modification system%2C M protein.%3B~High confidence in function and specificity	gene	gene3	http://www.ncbi.nlm.nih.gov/gene/?term=azo0004
azo0005	azo0005	mloB	mloB	7453	8910	+	putative restriction modification gene	Putative restriction modification gene%2C%3B~Function unclear	gene	gene4	http://www.ncbi.nlm.nih.gov/gene/?term=azo0005
azo0006	azo0006		azo0006	8919	9038	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank no domains predicted no signal peptide no TMHS	gene	gene5	http://www.ncbi.nlm.nih.gov/gene/?term=azo0006
azo0007	azo0007	hsdS	hsdS	9035	10384	+	Type I site-specific deoxyribonuclease	S subunit%2C DNA SPECIFICITY SUBUNIT REQUIRED FOR RESTRICTION AND MODIFICATION%2C TREMBL:Q9AAH7 (31%25 identity)%3B TREMBL:Q8PIJ8 (28%25 identity). Pfam (PF01420): Type I restriction modification DNA specificity domain. InterPro (IPR000055): Restriction modification system DNA specificity domain.%3B~High confidence in function and specificity	gene	gene6	http://www.ncbi.nlm.nih.gov/gene/?term=azo0007
azo0008	azo0008		azo0008	10381	11256	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RB11641 of R.baltica of 42%25 (tremble:Q7TTG8). No domains predicted. No TMHs. No signal peptide.	gene	gene7	http://www.ncbi.nlm.nih.gov/gene/?term=azo0008
azo0009	azo0009		azo0009	11468	11794	+	transcriptional regulatory protein	Transcriptional regulatory protein%2C 35%25 identity to TrEMBL%3BQ89JK0. Has Prosite%2C PS01117%3B HTH_MARR_1 domain%3B The marR-type HTH domain is a DNA-binding%2C winged helix-turn-helix (wHTH)domain of about 135 amino acids present in transcription regulators of the marR/slyA family%2Cinvolved in the development of antibiotic resistance%3B~Function unclear	gene	gene8	http://www.ncbi.nlm.nih.gov/gene/?term=azo0009
azo0010	azo0010	hsdR	hsdR	11948	15061	+	Type I site-specific deoxyribonuclease	SUBUNIT R IS REQUIRED FOR BOTH NUCLEASE AND ATPASE ACTIVITIES BUT NOT FOR MODIFICATION (BY SIMILARITY)%2CTREMBL:Q9AAH5 (64%25 identity)%3B TREMBL:Q8FUH0 (40%25 identity). InterPro (IPR001410): DEAD/DEAH box helicase TIGRFAM (TIGR00348): Type I site-specific deoxyribonuclease%2C HsdR family.%3B~High confidence in function and specificity	gene	gene9	http://www.ncbi.nlm.nih.gov/gene/?term=azo0010
azo0011	azo0011		azo0011	15231	16085	-	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2C similarity to SWISSPROT:P37959 (35%25 identity)%3B TREMBL:Q930L8 (44%25 identity)%3B TREMBL:Q9I3W5 (41%25 identity). Pfam (PF00106): Short chain dehydrogenase. InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase.%3B~Specificity unclear	gene	gene10	http://www.ncbi.nlm.nih.gov/gene/?term=azo0011
azo0012	azo0012	bdhR	bdhR	16203	17150	+	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~High confidence in function and specificity	gene	gene11	http://www.ncbi.nlm.nih.gov/gene/?term=azo0012
azo0013	azo0013	rluA1	rluA1	17232	17876	+	pseudouridine synthase A	Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs .%3B~Family membership	gene	gene12	http://www.ncbi.nlm.nih.gov/gene/?term=azo0013
azo0014	azo0014	nifF1	nifF1	18010	18567	-	probable flavodoxin	Probable flavodoxin. Homology to nifF of A. vinelandii of 49%25 (pir|FXAVEP) Flavodoxins are electron-transfer proteins that function in various electron transport systems. Flavodoxins bind one FMN molecule%2Cwhich serves as a redox-active prosthetic group and are functionally interchangeable with ferredoxins. InterPro: Flavodoxin (IPR001226) Pfam: Flavodoxin no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene13	http://www.ncbi.nlm.nih.gov/gene/?term=azo0014
azo0015	azo0015		azo0015	18971	19501	-	conserved hypothetical protein	Conserved hypothetical protein%2C 50%25 identitcal(67%25 similarity) to TrEMBL%3BQ888U7.TrEMBL%3BQ747X0(33%25 identity). Has PF03473%2C MOSC domain%3BIPR005302%3B The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich domains identified in the molybdenum cofactor sulfurase and several other proteins from both prokaryotes and eukaryotes. These MOSC domains contain an absolutely conserved cysteine and occur either as stand-alone forms such as P32157%2C or fused to other domains such as NifS-like catalytic domain in Molybdenum cofactor sulfurase. The MOSC domain is predicted to be a sulfur-carrier domain that receives sulfur abstracted by the pyridoxal phosphate-dependent NifS-like enzymes%2C on its conserved cysteine%2Cand delivers it for the formation of diverse sulfur-metal clusters.%3B~Function unclear	gene	gene14	http://www.ncbi.nlm.nih.gov/gene/?term=azo0015
azo0016	azo0016		azo0016	19505	19855	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Daro03002995 of Dechloromonas aromatica of 34%25 (ZP_00348572.1). No signal peptide present. TMHMM reporting one transmembrane helix. No domains predicted.%3B~Conserved hypothetical protein	gene	gene15	http://www.ncbi.nlm.nih.gov/gene/?term=azo0016
azo0017	azo0017		azo0017	19882	20355	-	Hypothetical protein	Hypothetical protein%2C 28%25 identity to TrEMBL%3BQ8E8U4. Has PF07049%2C Protein of unknown function (DUF1332)%3B IPR010755%3BThis family consists of several hypothetical bacterial proteins of around 165 residues in length. The function of this family is unknown.%3B~Function unclear	gene	gene16	http://www.ncbi.nlm.nih.gov/gene/?term=azo0017
azo0018	azo0018		azo0018	20480	21061	-	ThiJ/PfpI family protein	InterPro (IPR002818): ThiJ/PfpI. Pfam (PF01965): DJ-1/PfpI family.%3B~Specificity unclear	gene	gene17	http://www.ncbi.nlm.nih.gov/gene/?term=azo0018
azo0019	azo0019		azo0019	21263	22402	+	extracellular ligand binding protein	This family includes extracellular ligand binding domains of a wide range of receptors and it also includes the bacterial amino acid binding proteins of known structure. Similar to trembl|Q8XVG7 (38%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Function unclear	gene	gene18	http://www.ncbi.nlm.nih.gov/gene/?term=azo0019
azo0020	azo0020		azo0020	22404	23309	-	probable transcriptional regulator%2C LysR family	Probable transcriptional regulator%2C LysR family%2C%3B~Family membership	gene	gene19	http://www.ncbi.nlm.nih.gov/gene/?term=azo0020
azo0021	azo0021	iorA	iorA	23470	23928	+	probable isoquinoline 1-oxidoreductase%2C alpha subunit	Probable isoquinoline 1-oxidoreductase%2C alpha subunit Homology to iroA of B. diminuta of 58%25 (sprot|IORA_BREDI). InterPro: [2Fe-2S] binding domain (IPR002888)%3B Ferredoxin (IPR001041) Pfam: 2FE-2S iron-sulfur cluster binding domein%2C [2Fe-2S] binding domain no signal peptide no TMHs%3B~Specificity unclear	gene	gene20	http://www.ncbi.nlm.nih.gov/gene/?term=azo0021
azo0022	azo0022	iorB	iorB	23939	26152	+	putative isoquinoline 1-oxidoreductase%2C beta subunit	Putative isoquinoline 1-oxidoreductase%2C beta subunit Homology to iorB of B. diminuta of 34%25 (sprot|IORB_BREDI). InterPro: Aldehyde oxidase and xanthine dehydrogenase C terminus (IPR000674) Pfam: Aldehyde oxidase and xanthine dehydrogenase signal peptide no TMHs%3B~Family membership	gene	gene21	http://www.ncbi.nlm.nih.gov/gene/?term=azo0022
azo0023	azo0023		azo0023	26175	27197	+	conserved hypothetical protein	Conserved hypothetical protein (Xanthine like-dehydrogenase accessory factor). Homology to Rsc1464 (hyp. protein) of R. solanacearum of 66%25 (CAD15165). InterPro: DUF182 Pfam: uncharacterized BCR%2C COG1975 no signal peptide no TMHs	gene	gene22	http://www.ncbi.nlm.nih.gov/gene/?term=azo0023
azo0024	azo0024		azo0024	27194	27763	+	conserved hypothetical protein	Purine catabolism protein pucB. TREMBL:Q8XZ0: 40%25 identity%2C 47%25 similarity Required for xanthine dehydrogenase activity. Could be involved in formation of the molybdenum cofactor required by xanthine dehydrogenase. FUNCTION: Links a guanosine 5'-phosphate to molydopterin (MPT) forming molybdopterin guanine dinucleotide (MGD) (By similarity). PATHWAY: Molybdenum cofactor biosynthesis. SUBCELLULAR LOCATION: Cytoplasmic (By similarity). SIMILARITY: Belongs to the mobA family. Pfam:UPF0007:Uncharacterized protein family UPF000 ispD: 4-diphosphocytidyl-2C-methyl-D-er Non-secretory protein with signal peptide probability: 0 No TMH's (TMHMM predicted).%3B~Function unclear	gene	gene23	http://www.ncbi.nlm.nih.gov/gene/?term=azo0024
azo0025	azo0025		azo0025	28052	28618	+	conserved hypothetical protein	Hypothetical protein yddH. TREMBL:Q7NTI1:66%25 identity%2C 76%25 similarity InterPro:IPR002563%3B Flavin_Reduct. Pfam:PF01613%3B Flavin_Reduct%3B InterPro: Flavin reductase-like domain Non-secretory protein with no signal peptide. No transmembrane helices TIGR00357: PilB-related protein%3B~High confidence in function and specificity	gene	gene24	http://www.ncbi.nlm.nih.gov/gene/?term=azo0025
azo0026	azo0026	acbB	acbB	28631	29569	-	putative dTDP-glucose 4-6-dehydratase	dTDP-glucose 4%2C6-dehydratase%2C AcbB%2Cprobably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Belongs to the sugar epimerase family. dTDP-glucose dehydratase subfamily. 30%25 dTDP_gluc_dehyt.IPR001509%3B Epimerase_Dh. Pfam:PF01370%3B Epimerase%3B 1. TIGRFAMs:TIGR01181%3B dTDP_gluc_dehyt%3B 1.%3B~High confidence in function and specificity	gene	gene25	http://www.ncbi.nlm.nih.gov/gene/?term=azo0026
azo0027	azo0027	exoU	exoU	29590	30477	+	Glycosyltransferase	Putative glycosyl transferase. Weak Homology with hits spanning the entire length of protein. 24%25 identitcal to TrEMBL%3BQ8F209.TrEMBL%3B Q89D69(33%25 identity) Has PF00535%2CGlycosyl transferase:IPR001173%3BDiverse family%2Ctransferring sugar from UDP-glucose%2C UDP-N-acetyl-galactosamine%2C GDP-mannose or CDP-abequose%2C to a range of substrates including cellulose%2C dolichol phosphate and teichoic acids. The biosynthesis of disaccharides%2Coligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These are enzymes that catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules%2Cforming glycosidic bonds.%3B~Family membership	gene	gene26	http://www.ncbi.nlm.nih.gov/gene/?term=azo0027
azo0028	azo0028		azo0028	30502	30732	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein Homology to cv0580 of C. violaceum of 41%25 (trembl|Q7P0I7(SRS)) no domains predicted no signal peptide 2 TMHs%3B~Conserved hypothetical protein	gene	gene27	http://www.ncbi.nlm.nih.gov/gene/?term=azo0028
azo0029	azo0029		azo0029	30906	31676	+	conserved hypothetical membrane protein	Similar to a tellurium resistance protein TerC. Belongs to the terC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. Similar to a putative membrane protein TerC%2C80%25 identity to TrEMBL%3B Q5P410 from Azoarcus sp EnN1. 50%25 RNA_rec_mot.IPR005496%3B TerC. Pfam:PF03741%3B TerC%3B 1. TIGR:SPTO2691. TMHelix:5.%3B~Conserved hypothetical protein	gene	gene28	http://www.ncbi.nlm.nih.gov/gene/?term=azo0029
azo0030	azo0030	gltR	gltR	31735	32625	-	probable transcriptional regulator%2C LysR family	HTH-type transcriptional regulator gltR. POSITIVE REGULATOR OF GLUTAMATE BIOSYNTHESIS (GLTAB GENES). NEGATIVELY REGULATES ITS OWN EXPRESSION. Similar to SWISSPROT: sprot|GLTR_BACSU (33%25 Bacillus subtilis%2C HTH-type transcriptional regulator GltR) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2ClysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene29	http://www.ncbi.nlm.nih.gov/gene/?term=azo0030
azo0031	azo0031		azo0031	32784	34019	+	putative permease member of the MFS transporters	Permease member of the Major Facilitator Superfamily (MFS).MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 25%25 MFS.IPR005828%3B Sub_transporter. Pfam:PF00083%3B sugar_tr%3B 1. TMHelix: 10.%3B~High confidence in function and specificity	gene	gene30	http://www.ncbi.nlm.nih.gov/gene/?term=azo0031
azo0032	azo0032		azo0032	34326	34814	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to nfa21510 of Nocardia farcinica of 31%25 (trembl:Q5YXU4). No domains predicted. No TMHs. No signal peptide.	gene	gene31	http://www.ncbi.nlm.nih.gov/gene/?term=azo0032
azo0033	azo0033		azo0033	35113	35601	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to nfa21510 of Nocardia farcinica of 42%25 (trembl:Q5YXU4). No domains predicted. No TMHs. No signal peptide.	gene	gene32	http://www.ncbi.nlm.nih.gov/gene/?term=azo0033
azo0034	azo0034		azo0034	35640	37502	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PP2042 of P. putida of 34%25 (TrEMBL%3BQ88L93) Has PF06980:(IPR010727)Protein of unknown function (DUF1302)%3BThis family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas. No TMHs signal peptide present.%3B~Conserved hypothetical protein	gene	gene33	http://www.ncbi.nlm.nih.gov/gene/?term=azo0034
azo0035	azo0035		azo0035	37514	38869	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA3421 of P. aeruginosa of 50%25 (TrEMBL%3BQ9HYI4) Has (IPR010752)PF07044:Protein of unknown function (DUF1329)%3BThis family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. No TMHs signal peptide present%3B~Conserved hypothetical protein	gene	gene34	http://www.ncbi.nlm.nih.gov/gene/?term=azo0035
azo0036	azo0036		azo0036	38945	40102	+	conserved hypothetical BNR domain protein	Conserved hypothetical BNR domain protein. Homology to pp3201 of P. putida of 40%25 (trembl|Q88I01). InterPro: BNR repeat (IPR002860) Pfam: BNR repeat BNR repeats are short repeats never found closer than 40 residues together%2C which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. singal peptide no TMHs%3B~Function unclear	gene	gene35	http://www.ncbi.nlm.nih.gov/gene/?term=azo0036
azo0037	azo0037		azo0037	40095	42521	+	probable exporter of RND superfamily	Putative membrane protein MJ1562. TREMBL:Q88LB6: 47%25 identity%2C 63%25 similarity InterPro:IPR000731%3B SSD_5TM InterPro: HMGCR/Patched 5TM box Pfam:Patched:Patched family 2A067: efflux transporter putative Signal peptide absent. Presence of 12 transmembrane helices%3B~Family membership	gene	gene36	http://www.ncbi.nlm.nih.gov/gene/?term=azo0037
azo0038	azo0038		azo0038	42527	43336	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases. EntA%2Ca 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase enzyme%2Cis involved in the third stage of enterobactin biosynthesis and converts isochorismate to 2%2C3-dihydroxybenzoic acid (DHBA)%2C SWISSPROT:Q10855 (37%25 identity)%3B TREMBL:Q89M15 (36%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. InterPro (IPR003560): 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene37	http://www.ncbi.nlm.nih.gov/gene/?term=azo0038
azo0039	azo0039		azo0039	43466	45670	+	conserved hypothetical protein	Conservd hypothetical protein%2C 79%25 identity(85%25 similarity) to TrEMBL%3BQ88GU7. Has PF02566%2C OsmC-like protein%3B IPR003718%3B Osmotically inducible protein C (OsmC) (P23929) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein (O68390) that has a novel pattern of oxidative stress regulation. Has PF02624%2C YcaO-like fatty acid binding protein%3BIPR003776%2C DUF181%3BThis is a family of proteins of unknown function.	gene	gene38	http://www.ncbi.nlm.nih.gov/gene/?term=azo0039
azo0040	azo0040		azo0040	45701	46612	-	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene39	http://www.ncbi.nlm.nih.gov/gene/?term=azo0040
azo0041	azo0041		azo0041	46800	47561	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q9I376 (49%25 identity)%3B SWISSPROT:P50197 (44%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene40	http://www.ncbi.nlm.nih.gov/gene/?term=azo0041
azo0042	azo0042		azo0042	47901	48494	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bll2189 of B. japonicum of 48%25 (trembl|Q89T61). Has PF06577%2C Protein of unknown function (DUF1134)%3BIPR008325%2CUCP033924%3B This family consists of several hypothetical bacterial proteins of unknown function. Signal peptide. TMH present in signal peptide.%3B~Conserved hypothetical protein	gene	gene41	http://www.ncbi.nlm.nih.gov/gene/?term=azo0042
azo0043	azo0043		azo0043	48804	49574	-	conserved hypothetical protein	Hypothetical UPF0271 protein PYRAB09930. This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes%2ClamA and lamB%2C involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression [1]. The exact molecular function of the proteins in this family is unknown. SPROT:Q89LH6: 47%25 identity%2C 62%25 similarity InterPro:IPR005501%3B LamB_YcsF. Pfam:PF03746%3B LamB_YcsF urease_gam: urease gamma subunit Nonsecretory protein with Signal peptide probability 0 No transmembrane helices%3B~Family membership	gene	gene42	http://www.ncbi.nlm.nih.gov/gene/?term=azo0043
azo0044	azo0044		azo0044	49571	50671	-	conserved hypothetical urea amidolyase-related protein	Conserved hypothetical urea amidolyase-related protein. Homology to ybgK of E. coli of 36%25 (sprot|YBGK_ECOLI). InterPro: DUF183 (IPR003778) Uncharacterized domain in proteins of unknown function. This domain is found in a multifunctional enzyme%2C urea amidolyase%2C from yeast. Pfam: DFU182%2C uncharcterized ACR%2CCOG1984 no signal peptide no TMHs%3B~Function unclear	gene	gene43	http://www.ncbi.nlm.nih.gov/gene/?term=azo0044
azo0045	azo0045		azo0045	50668	51462	-	conserved hypothetical protein	Conserved hypothetical protein ybgJ. Homology to ybgJ of E. coli of 41%25 (sprot|YBGJ_ECOLI) InterPro: DUF213 (IPR003833) Pfam: DUF213%2C uncharacterized ACR%2C COG2049 no signal peptide no TMHs%3B~Function unclear	gene	gene44	http://www.ncbi.nlm.nih.gov/gene/?term=azo0045
azo0046	azo0046	dehH	dehH	51590	52516	-	haloacetate dehalogenase	Hypothetical haloacetate dehalogenase H-1 (EC 3.8.1.3). Haloacetate + H(2)O %3D glycolate + halide TREMBL:Q8Y2S9: 58%25 identity%2C 67%25 similarity Gene name:dehH from Ralstonia solanacearum genome project. InterPro: Alpha/beta hydrolase fold InterPro:IPR000073%3B A/b_hydrolase. IPR000379: Ser_estrs. Pfam:PF00561%3B Abhydrolase_1 nadp_idh_euk: isocitrate dehydrogenase No TMH present absence of signal peptide.%3B~Family membership	gene	gene45	http://www.ncbi.nlm.nih.gov/gene/?term=azo0046
azo0047	azo0047		azo0047	52582	53337	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein Homology to pa4487 of P. aeruginosa of 52%25 (trembl|Q9HVT4(SRS)) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene46	http://www.ncbi.nlm.nih.gov/gene/?term=azo0047
azo0048	azo0048		azo0048	53315	54151	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc3028 of R. solanacearum of 57%25 (trembl|Q8XV04(SRS)) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene47	http://www.ncbi.nlm.nih.gov/gene/?term=azo0048
azo0049	azo0049		azo0049	54285	56000	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA4488 of P. aeruginosa of 47%25 (trembl|Q9HVT3(SRS)) No domains predicted. No TMHs. Singal Peptide Present.%3B~Conserved hypothetical protein	gene	gene48	http://www.ncbi.nlm.nih.gov/gene/?term=azo0049
azo0050	azo0050	phaZ	phaZ	56050	57162	-	Poly (3-hydroxybutyrate) depolymerase	This protein degrades water-insoluble and water-soluble PHB to monomeric D(-)-3-hydroxybutyrate%2CTREMBL:Q9LBN6 (35%25 identity)%3B TREMBL:Q46334 (34%25 identity). SignalP predicting signal peptide.%3B~High confidence in function and specificity	gene	gene49	http://www.ncbi.nlm.nih.gov/gene/?term=azo0050
azo0051	azo0051		azo0051	57268	58020	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA624 of Azoarcus sp. EbN1 of 52%25 (gnl|keqq|eba:ebA624(KEGG)) . no domains predicted. no signal peptide. 3 TMHs	gene	gene50	http://www.ncbi.nlm.nih.gov/gene/?term=azo0051
azo0052	azo0052		azo0052	58066	59952	+	hypothetical secreted protein	Hypothetical secreted protein. No homology of the entire protein to the data bank. InterPro:Esterase/lipase/thioesterase family active site Pfam:Putative serine esterase (DUF676) This family of proteins are probably serine esterase type enzymes. Signal peptide present (Signal P predicted) No transmembrane helices.	gene	gene51	http://www.ncbi.nlm.nih.gov/gene/?term=azo0052
azo0053	azo0053	rstB	rstB	59974	61287	-	probable sensor histidine kinase	Probable two component sensor histidine kinase%2C%3B~Specificity unclear	gene	gene52	http://www.ncbi.nlm.nih.gov/gene/?term=azo0053
azo0054	azo0054	rstA	rstA	61284	62054	-	probable two-component response regulator	Two component response regulator%2C%3B~Specificity unclear	gene	gene53	http://www.ncbi.nlm.nih.gov/gene/?term=azo0054
azo0055	azo0055		azo0055	62241	62975	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:O54136 (41%25 identity)%3B TREMBL:Q8RCZ7 (40%25 identity). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership	gene	gene54	http://www.ncbi.nlm.nih.gov/gene/?term=azo0055
azo0056	azo0056		azo0056	62972	64369	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to cv3942 of C. violaceum of 30%25 (trembl|Q7NR42) InterPro: DUF214 (IPR003838) Pfam: Predicted permease This is a family of predicted permeases and hypothetical transmembrane proteins. One member has been shown to transport lipids targeted to the outer membrane across the inner membrane%2C a step which requires ATP. Signal peptide 3 TMHs%3B~Conserved hypothetical protein	gene	gene55	http://www.ncbi.nlm.nih.gov/gene/?term=azo0056
azo0057	azo0057		azo0057	64362	65171	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to BPSS2323 of Burkholderia pseudomallei of 45%25 (trembl:Q63HU7). no domains predicted. singal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene56	http://www.ncbi.nlm.nih.gov/gene/?term=azo0057
azo0058	azo0058		azo0058	65168	66349	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide TMHs inside of the signal peptide.	gene	gene57	http://www.ncbi.nlm.nih.gov/gene/?term=azo0058
azo0059	azo0059		azo0059	66440	71053	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc3030 of R. solanacearum of 48%25 (sprot|YU30_RALSO) Pfam: Alpha-2-macroglobulin family Nterminal region (PF01835%2C PF07703) signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene58	http://www.ncbi.nlm.nih.gov/gene/?term=azo0059
azo0060	azo0060		azo0060	71064	71747	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS04726 of R. solanacearum of 55%25 (trembl|Q8XV01(SRS)) Has PF06672%3B(IPR009558)Protein of unknown function (DUF1175):This family consists of several hypothetical bacterial proteins of around 210 residues in length. The function of this family is unknown. No TMHs signal peptide present.%3B~Conserved hypothetical protein	gene	gene59	http://www.ncbi.nlm.nih.gov/gene/?term=azo0060
azo0061	azo0061		azo0061	71744	73438	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS04725 of Ralstonia solanacearum of 43%25 (trembl|Q8XV00(SRS)) No domains predicted. Signal Peptide Present. NO TMH reported present.%3B~Conserved hypothetical protein	gene	gene60	http://www.ncbi.nlm.nih.gov/gene/?term=azo0061
azo0062	azo0062		azo0062	73627	75072	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to MCA0287 of Methylococcus capsulatus of 48%25 (trembl:Q60C24). no domains predicted. no signal peptide. no TMHs	gene	gene61	http://www.ncbi.nlm.nih.gov/gene/?term=azo0062
azo0063	azo0063		azo0063	75089	75535	+	hypothetical protein	Hypothetical protein. No good homology to the data bank. No domains predicted. No TMHs Probable signal peptide.	gene	gene62	http://www.ncbi.nlm.nih.gov/gene/?term=azo0063
azo0064	azo0064		azo0064	75546	76649	-	probable permease	Hypothetical protein ydiK.Integral membrane protein (potential). similarity:belongs to the upf0118 (perm) family TREMBL:Q7WQ94: 68%25 identity%3B 81%25 similarity. PIR:AD2790%3B AD2790.C97569%3B C97569. InterPro:IPR000585%3B Hemopexin. IPR002549%3B UPF0118. Pfam: PF01594%3B UPF0118%3B 2A0604s01: protein-export membrane pro Pfam: presence of DUF20 domain and branched chain amino acid transport. TIGRFAM: general nitrate transport. Signal P predicted signal peptide and TMHMM predicted transmembrane helices.%3B~Function unclear	gene	gene63	http://www.ncbi.nlm.nih.gov/gene/?term=azo0064
azo0065	azo0065		azo0065	76751	77287	-	conserved hypothetical protein	64%25 similarity with ABC-type multidrug transport system%2C ATPase and permease components [Dechloromonas aromatica RCB]. and	gene	gene64	http://www.ncbi.nlm.nih.gov/gene/?term=azo0065
azo0066	azo0066		azo0066	77284	78402	-	probable enoyl-CoA hydratase/isomerase	Enoyl-CoA hydratase and 3-2trans-enoyl-CoA isomerase are two enzymes involved in fatty acid metabolism. ECH catalyzes the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA and ECI shifts the 3- double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position.In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA)%2C ECH and ECI are also part of a multifunctional enzyme which contains both a HCDH and a 3-hydroxybutyryl-CoA epimerase domain. InterPro: Enoyl-CoA hydratase/isomerase Entry name TREMBL:Q8PMW0 Prim. accession # Q8PMW0 InterPro IPR001753%3B EnCoA_hydrtse. Pfam PF00378%3B ECH%3B 1 Identities %3D 169/379 (44%25) Number of predicted TMHs: 0 Signal peptide probability: 0.000%3B~Family membership	gene	gene65	http://www.ncbi.nlm.nih.gov/gene/?term=azo0066
azo0067	azo0067	polC	polC	78461	79156	+	DNA-directed DNA polymerase	DNA polymerase III polC-type (EC 2.7.7.7) (PolIII). Required for replicative DNA synthesis. This DNA polymerase also exhibits 3 to 5 exonuclease activity (By similarity). InterPro: Exonuclease dnaq: DNA polymerase III epsilon subun%3B~High confidence in function and specificity	gene	gene66	http://www.ncbi.nlm.nih.gov/gene/?term=azo0067
azo0068	azo0068		azo0068	79164	79916	-	Hypothetical protein	Hypothetical protein. No good homology with any hits of this length protein. No Domains/Features/motifs/signal peptide present.	gene	gene67	http://www.ncbi.nlm.nih.gov/gene/?term=azo0068
azo0069	azo0069		azo0069	80013	80393	+	conserved hypothetical globin-like protein	Conserved hypothetical globin-like protein. Homology to rpa2719 of R. palustris of 46%25 (tremblnew|CAE28161). Interpro: IPR009050 Globin-like. Globins are heme-containing proteins involved in binding and/or transporting oxygen. This family of heme binding proteins are found mainly in bacteria. No signal peptide. No TMHs%3B~Function unclear	gene	gene68	http://www.ncbi.nlm.nih.gov/gene/?term=azo0069
azo0070	azo0070		azo0070	80397	80645	-	hypothetical membrane protein	Hypothetical membrane protein. no homology to the data bank. no domains predicted.signal peptide. 1 TMHs	gene	gene69	http://www.ncbi.nlm.nih.gov/gene/?term=azo0070
azo0071	azo0071		azo0071	80784	82139	+	sigma-54 dependent response regulator	Sigma-54 dependent response regulator%2C%3B~Specificity unclear	gene	gene70	http://www.ncbi.nlm.nih.gov/gene/?term=azo0071
azo0072	azo0072		azo0072	82158	84344	+	putative sensor histidine kinase	Putative two component sensor histidine kinase%2C%3B~Specificity unclear	gene	gene71	http://www.ncbi.nlm.nih.gov/gene/?term=azo0072
azo0073	azo0073		azo0073	84372	85583	+	putative MFS permease	Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Probable sugar-proton symporter transmembrane protein ProP proline/betaine transporter. Low homology to the hypothetical protein ycxA (ORF5)involved in the biosynthesis of the pepitde antibiotic Bacitracin in B. subtilis. Signal peptide%3B~Specificity unclear	gene	gene72	http://www.ncbi.nlm.nih.gov/gene/?term=azo0073
azo0074	azo0074		azo0074	85691	87382	+	conseved hypothetical exported protein	Hypothetical protein yfbK. The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders [1]. In von Willebrand factor%2C the type A domain (vWF) is the prototype for a protein superfamily. trembl:Q8P6Q2: 55%25 identity%3B 66%25 similarity InterPro:IPR002016%3B Peroxidase. IPR002035%3B VWF_A. Pfam: PF00092%3B VWA%3B 1. SMART: SM00327%3B VWA%3B 1. cdhD: CO dehydrogenase/acetyl-CoA syn Signal peptide present (0.927 probability)%3B SignalP predicted. No transmembrane helices (TMHMM predicted).%3B~Function unclear	gene	gene73	http://www.ncbi.nlm.nih.gov/gene/?term=azo0074
azo0075	azo0075	rpoE	rpoE	87379	87978	+	probable RNA polymerase sigma-E factor (sigma-24)	Probable RNA polymerase sigma-E factor (sigma-24)%2C%3B~High confidence in function and specificity	gene	gene74	http://www.ncbi.nlm.nih.gov/gene/?term=azo0075
azo0076	azo0076		azo0076	87975	88751	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to BB3269 of Bordetella bronchiseptica of 31%25 (trembl|Q7WHD9(SRS)). No domains predicted. no signal peptide 1 TMH%3B~Conserved hypothetical protein	gene	gene75	http://www.ncbi.nlm.nih.gov/gene/?term=azo0076
azo0077	azo0077		azo0077	88772	88993	-	Hypothetical protein	Hypothetical protein. No Good homologs. No Domains/Features/Motifs reported present.	gene	gene76	http://www.ncbi.nlm.nih.gov/gene/?term=azo0077
azo0078	azo0078		azo0078	89004	89966	-	Hypothetical protein	Hypothetical protein. Weak homology with hits over entire length. PS50821%3B PAZ domain present(Prosite)	gene	gene77	http://www.ncbi.nlm.nih.gov/gene/?term=azo0078
azo0079	azo0079	rtcB	rtcB	90144	91352	-	rtcB protein	rtcB protein%2C 57%25 identical(70%25 similairty) to TrEMBL%3BQ7NZ85 TrEMBL%3BQ8FCS7(56%25 identity). Has IPR001233%3BUPF0027(PF01139%2C Uncharacterized protein family):A number of uncharacterized proteins including Escherichia coli rtcB%2C Mycobacterium tuberculosis MtCY441.01.%2C Caenorhabditis elegans F16A11.2 and Methanococcus jannaschii MJ0682 belong to this family. Has no Signal peptide or TMH present.%3B~High confidence in function and specificity	gene	gene78	http://www.ncbi.nlm.nih.gov/gene/?term=azo0079
azo0080	azo0080	prfC	prfC	91812	93434	+	peptide chain release factor	Peptide chain release factor 3 (RF-3). Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP but not by GMP%3B~High confidence in function and specificity	gene	gene79	http://www.ncbi.nlm.nih.gov/gene/?term=azo0080
azo0081	azo0081		azo0081	93454	93981	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to pa4965 ao P. aeruginosa of 50%25 (trembl|Q9HUK0) Pfam: Retroviral aspartyl protease no signal peptide 1 TMHs%3B~Conserved hypothetical protein	gene	gene80	http://www.ncbi.nlm.nih.gov/gene/?term=azo0081
azo0082	azo0082	rdgC	rdgC	94431	95405	-	recombination associated protein RdgC	Recombination associated protein rdgC. Not known%3B may be involved in recombination (By similarity). hemC: porphobilinogen deaminase.%3B~High confidence in function and specificity	gene	gene81	http://www.ncbi.nlm.nih.gov/gene/?term=azo0082
azo0083	azo0083		azo0083	95476	95943	-	conserved hypothetical protein		gene	gene82	http://www.ncbi.nlm.nih.gov/gene/?term=azo0083
azo0084	azo0084	rsuA	rsuA	96022	96768	+	pseudouridylate synthase	Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-516 in 16S ribosomal RNA.%3B~Family membership	gene	gene83	http://www.ncbi.nlm.nih.gov/gene/?term=azo0084
azo0085	azo0085		azo0085	97020	98186	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS04117 of R.solanacearum of 52%25 (tremble:Q8Y0H4) No domains predicted. No signal peptide. No TMHs	gene	gene84	http://www.ncbi.nlm.nih.gov/gene/?term=azo0085
azo0086	azo0086	efp	efp	98247	98804	+	putative elongation factor P	Elongation factor P (EF-P). Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA thus increasing their reactivity as acceptors for peptidyl transferase.%3B~High confidence in function and specificity	gene	gene85	http://www.ncbi.nlm.nih.gov/gene/?term=azo0086
azo0087	azo0087		azo0087	98928	99359	+	hypothetical secreted protein	Hypothetical secreted protein. Homology to RS00193 of R. solanacearum of 26%25 (tremble:Q8XVC9) PF02987%2C Late embryogenesis abundant protein%3BIPR004238%3BDifferent types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. No TMHs Signal peptide present	gene	gene86	http://www.ncbi.nlm.nih.gov/gene/?term=azo0087
azo0088	azo0088	uvrA1	uvrA1	99435	105044	+	putative excinuclease ABC subunit	UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A). The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB the uvrA molecules dissociate (By similarity). InterPro: Excinuclease ABC A subunit%3B~High confidence in function and specificity	gene	gene87	http://www.ncbi.nlm.nih.gov/gene/?term=azo0088
azo0089	azo0089		azo0089	105090	105788	+	conserved hypothetical hydrogenase cytochrome b-type subunit	Conserved hypothetical hydrogenase cytochrome b-type subunit. Homology to C. vinosum of 56%25 (trembl|Q46471). Involved in electron transfer from hydrogen to oxygen. probable signal peptide probable 4 TMHs%3B~Family membership	gene	gene88	http://www.ncbi.nlm.nih.gov/gene/?term=azo0089
azo0090	azo0090	cycA1	cycA1	105850	106314	-	probable cytochrome c'	Probable cytochrome c'. Homology to cycA of C. vinosum of 61%25 (sprot|CYCP_CHRVI). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. Pfam: Cytochrome c. signal peptide no TMHs%3B~Function unclear	gene	gene89	http://www.ncbi.nlm.nih.gov/gene/?term=azo0090
azo0091	azo0091		azo0091	106574	108199	+	probable methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein%2C%3B~Specificity unclear	gene	gene90	http://www.ncbi.nlm.nih.gov/gene/?term=azo0091
azo0092	azo0092	mucD1	mucD1	108207	109646	-	probable serine protease MucD	Probable serine protease. Homology to mucD of P. aeruginosa of 55%25 (AAC43718). Pfam: Trypsin%3B PDZ domain (also known as DHR or GLGF) signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene91	http://www.ncbi.nlm.nih.gov/gene/?term=azo0092
azo0093	azo0093	irgA1	irgA1	109778	111763	-	putative TonB-dependent receptor	23%25 TonB_boxC. Pfam:PF00593%3B TonB_dep_Rec%3B 1.%3B~High confidence in function and specificity	gene	gene92	http://www.ncbi.nlm.nih.gov/gene/?term=azo0093
azo0094	azo0094	oxyR	oxyR	111975	112913	+	putative oxyR	oxyR%2C Hydrogen peroxide-inducible genes activator. BELONGS TO THE LYSR FAMILY OF TRANSCRIPTIONAL REGULATORS REQUIRED FOR THE INDUCTION OF A REGULON OF HYDROGEN PEROXIDE INDUCIBLE GENES SUCH AS CATALASE GLUTATHIONE-REDUCTASE ETC. (BY SIMILARITY). mreB: cell shape determining protein M 51%25 HTH_LysR. IPR005119%3B LysR_subst. IPR009058%3B Wing_hlx_DNA_bnd. PF00126%3B HTH_1%3B 1. PF03466%3B LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~High confidence in function and specificity	gene	gene93	http://www.ncbi.nlm.nih.gov/gene/?term=azo0094
azo0095	azo0095		azo0095	112981	115554	-	DNA topoisomerase III	DNA topoisomerase I (EC 5.99.1.2) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase). THE REACTION CATALYZED BY TOPOISOMERASES LEADS TO THE CONVERSION OF ONE TOPOLOGICAL ISOMER OF DNA TO ANOTHER. MAY PLAY AN IMPORTANT ROLE IN EITHER THE MAINTENANCE OF OR EXPRESSION FROM THE VIRULENCE PLASMID. ITS INFLUENCE ON EXPRESSION COULD BE SPECIFIC TUNING LOCAL SUPERHELICITY OR MORE GENERALLY MODIFYING THE SUPERHELICITY OF THE ENTIRE PLASMID IN RESPONSE TO ENVIRONMENTAL STIMULI THUS COULD BE A FUNDAMENTAL FACTOR INVOLVED IN VIRULENCE. InterPro: Prokaryotic DNA topoisomerase I%3B~High confidence in function and specificity	gene	gene94	http://www.ncbi.nlm.nih.gov/gene/?term=azo0095
azo0096	azo0096		azo0096	115666	116133	-	conserved hypothetical protein	Protein smg homolog%2C 45%25 identity (65%25 similarity) to SwissProt%3BP30853 43%25 identity to SwissProt%3BQ8X8F6%2CE.coli smg protein. Has PF04361(IPR007456):Protein of unknown function (DUF494)%3BMembers of this family of uncharacterised proteins are often named Smg. No signal peptide or TMH reported present.	gene	gene95	http://www.ncbi.nlm.nih.gov/gene/?term=azo0096
azo0097	azo0097	drpA	drpA	116194	117312	-	putative DNA processing protein DrpA	Putative DNA processing protein DrpA (Smf protein). Homology to drpA of H. influcenzae The SMF family (DNA processing chain A%2C dprA) are a group of bacterial proteins. In Helicobacter pylori%2C dprA is required for natural chromosomal and plasmid transformation InterPro: SMF family Tigerfam: dprA: DNA processing protein DprA%2Cputative Pfam SMF family no signal peptide no TMHs%3B~Family membership	gene	gene96	http://www.ncbi.nlm.nih.gov/gene/?term=azo0097
azo0098	azo0098		azo0098	117316	118503	-	conserved hypothetical membrane protein	Conseved hypothetical membrane protein. Homology to RSO2271 of R. solanacearum of 36%25 (trembl|Q8Y3B1(SRS)). Pfam: Lysin motif (SM00257) This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. No signal peptide 1 TMH%3B~Conserved hypothetical protein	gene	gene97	http://www.ncbi.nlm.nih.gov/gene/?term=azo0098
azo0099	azo0099	def1	def1	118530	119033	+	probable peptide deformylase	Probable peptide deformylase (EC 3.5.1.88). Homology to def of E. coli of 54%25 (sprot|DEF_ECOLI(SRS)). Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions Interpro: Formylmethionine deformylase (IPR000181) Pfam: Polypeptide deformylase Tigrfam: pept_deformyl: polypeptide deformylase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene98	http://www.ncbi.nlm.nih.gov/gene/?term=azo0099
azo0100	azo0100	fmt	fmt	119079	120044	+	Fmt protein	Methionyl-tRNA formyltransferase (EC 2.1.2.9). Modify the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by: (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (By similarity). InterPro: Methionyl-tRNA formyltransferase fmt: methionyl-tRNA formyltransferase%3B~High confidence in function and specificity	gene	gene99	http://www.ncbi.nlm.nih.gov/gene/?term=azo0100
azo0101	azo0101	htpX	htpX	120104	120946	+	putative protease HtpX	Putative protease HtpX Homolog to htpX of E. coli of 30%25 (AAA62779) InterPro: Peptidase family M48 (IPR001915) Pfam: Peptidase family M48 signal peptide TMHs3%3B~Family membership	gene	gene100	http://www.ncbi.nlm.nih.gov/gene/?term=azo0101
azo0102	azo0102	helX	helX	120960	121487	+	putative thiol:disulphide oxidoreductase	Putative thiol:disulfide oxidoreductase. Homology to helX of R. casulata of 35%25 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. Tigrfam: dsbE: periplasmic protein thiol:disulfide signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene101	http://www.ncbi.nlm.nih.gov/gene/?term=azo0102
azo0103	azo0103		azo0103	121484	122596	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to SMa0025 of S. meliloti of 46%25 pir|D95263(SRS). Pfam: Transglutaminase_like Superfamily signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene102	http://www.ncbi.nlm.nih.gov/gene/?term=azo0103
azo0104	azo0104		azo0104	122689	123570	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA582 of Azoacrus sp EbN1 (trembl:Q5P8D6). No domains predicted. SignalP reporting signal peptid. no TMHs%3B~Conserved hypothetical protein	gene	gene103	http://www.ncbi.nlm.nih.gov/gene/?term=azo0104
azo0105	azo0105	tpx	tpx	123626	124126	+	probable thiol peroxidase	Probable thiol peroxidase. Homology to E. coli of 62%25 (sprot:TPX_ECOLI) Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity). Pfam: AhpC/TSA family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene104	http://www.ncbi.nlm.nih.gov/gene/?term=azo0105
azo0106	azo0106		azo0106	124218	125105	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to an orf of R. palustris (tremblnew|CAE28417). Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Tranporter InterPro: Integral membrane protein DUF6 Pfam: Integral membrane protein DUF6 no signal peptide probable 10 TMHs%3B~Conserved hypothetical protein	gene	gene105	http://www.ncbi.nlm.nih.gov/gene/?term=azo0106
azo0107	azo0107		azo0107	125118	125834	-	conserved hypothetical membrane protein	conserved hypothetical membrane proteins%2C 42%25 identity (59%25 similarity) to TrEMBL%3BQ73PF0 Has PF02592%3BUncharacterized ACR%2C YhhQ family COG1738%3BIPR003744:This is a family of uncharacterized proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins. no signal peptide. 4 TMH.%3B~Conserved hypothetical protein	gene	gene106	http://www.ncbi.nlm.nih.gov/gene/?term=azo0107
azo0108	azo0108		azo0108	126088	127293	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to XCC0740 of Xanthomonas campestris of 33%25 (trembl|Q8PCI6(SRS) Pfam: Glycosyl hydrolases family 2%2CTIM barrel domain This family contains beta-galactosidase%2Cbeta-mannosidase and beta-glucuronidase activities. No TMHs Signal peptide: present.%3B~Conserved hypothetical protein	gene	gene107	http://www.ncbi.nlm.nih.gov/gene/?term=azo0108
azo0109	azo0109	yihZ	yihZ	127357	127812	+	D-tyrosyl-tRNA(Tyr) deacylase	D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-). Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine.%3B~High confidence in function and specificity	gene	gene108	http://www.ncbi.nlm.nih.gov/gene/?term=azo0109
azo0110	azo0110		azo0110	127825	128703	-	probable pirin-related protein	Pirin-like protein. TREMBL:Q8P799: 52%25 identity%2C65%25 similarity. InterPro: DUF209 his region is found the C-terminal half of the Pirin protein. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein%2C exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures. A tomato homologue of human Pirin has been found to be induced during programmed cell death. Human Pirin interacts with Bcl-3 and NFI and hence is probably involved in the regulation of DNA transcription and replication. It appears to be an Fe(II)-containing member of the Cupin superfamil InterPro:IPR007113%3B Cupin_sup. IPR008778%3B Pirin_C. IPR003829%3B Pirin_N. Pfam PF02678%3B Pirin%3B 1. PF05726%3B Pirin_C molyb_syn: molybdenum cofactor synthesis Absence of transmembrane helices (TMHMM predicted)%3B~Function unclear	gene	gene109	http://www.ncbi.nlm.nih.gov/gene/?term=azo0110
azo0111	azo0111	adhA	adhA	128838	129824	+	putative alcohol dehydrogenase	Putative Alcohol dehydrogenase. Homology to adh-HT of B. stearothermophilus (sprot|ADH3_BACST) THERMOSTABLE AND THERMOPHILIC NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE. BEARS MAINLY AN ETHANOL-DEHYDROGENASE ACTIVITY. CATALYTIC ACTIVITY:An alcohol + NAD(+) %3D an aldehyde or ketone + NADH. COFACTOR: Binds 2 zinc ions per subunit (By similarity). Pfam: Zinc-binding dehydrogenase Tirgfam: tdh: L-threonine 3-dehydrogenase no signal peptide no TMHs%3B~Family membership	gene	gene110	http://www.ncbi.nlm.nih.gov/gene/?term=azo0111
azo0112	azo0112	gstR1	gstR1	129841	130737	-	putative transcriptional regulator	Putative transcriptional regulator. Homology to gstR of R. leguminosarum of 37%25 (tremble:Q52827). Has PF00126%2C HTH_1%2CBacterial regulatory helix-turn-helix protein%2C lysR family.IPR000847%2C HTH_LysR%3B Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse%2C but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family%2C the lysR family%2C groups together a range of proteins%2C including ampR%2C catM%2C catR%2C cynR%2C cysB%2C gltC%2CiciA%2C ilvY%2C irgB%2C lysR%2C metR%2C mkaC%2C mleR%2C nahR%2C nhaR%2CnodD%2C nolR%2C oxyR%2C pssR%2C rbcR%2C syrM%2C tcbR%2C tfdS and trpI. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini. Has PF03466%2C LysR substrate binding domain%3BIPR005119%2C LysR_subst%3B The structure of this domain is known and is%3B~High confidence in function and specificity	gene	gene111	http://www.ncbi.nlm.nih.gov/gene/?term=azo0112
azo0113	azo0113	gstA	gstA	130842	131489	+	probable glutathione transferase	Probabe glutathione transferase. Homology to gstA of R. leguminosarum of 58%25 (sprot:GSTA_RHILE) Conjugation of reduced glutathione to a variety of targets. Pfam: PF02798%2C GST_N%2C Glutathione S-transferase%2C N-terminal domain%3B PF00043%2C GST_C%2C Glutathione S-transferase%2C C-terminal domain Interpro: IPR004045%2C GST_Nterm%3B IPR004046%2CGST_Cterm%3B no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene112	http://www.ncbi.nlm.nih.gov/gene/?term=azo0113
azo0114	azo0114		azo0114	131492	132490	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to bp2124 of B. pertussis of 48%25 (trembl|Q7VWS5). Pfam: Pyridoxamine 5-phosphate oxidase no signal peptide no TMHs	gene	gene113	http://www.ncbi.nlm.nih.gov/gene/?term=azo0114
azo0115	azo0115		azo0115	132910	133359	-	conserved hypothetical protein	MaoC protein (Phenylacetic acid degradation protein paaZ). Entry name :- TREMBL:Q8XXS0 Prim. accession # Q8XXS0 InterPro:-IPR002539%3B MaoC_dehydratas. Pfam:-PF01575%3B MaoC_dehydratas%3B 1. Identities %3D 77/145 (53%25) Number of predicted TMHs: 0	gene	gene114	http://www.ncbi.nlm.nih.gov/gene/?term=azo0115
azo0116	azo0116	amn	amn	133377	134873	-	AMP nucleosidase	AMP nucleosidase InterPro: Purine and other phosphorylases family 1%3B~High confidence in function and specificity	gene	gene115	http://www.ncbi.nlm.nih.gov/gene/?term=azo0116
azo0117	azo0117	braF	braF	135086	135853	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XU49 (72%25) and to sprot|BRAF_PSEAE (40%25). Pfam: ABC transporter Smart: AAA ATPases%3B~Specificity unclear	gene	gene116	http://www.ncbi.nlm.nih.gov/gene/?term=azo0117
azo0118	azo0118		azo0118	135870	136592	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7W5F6 (63%25) and to trembl|Q8U8G7 (59%25). Pfam (PF00005): ABC transporter Smart (SM00382): ATPase superfamily%3B~Specificity unclear	gene	gene117	http://www.ncbi.nlm.nih.gov/gene/?term=azo0118
azo0119	azo0119		azo0119	136627	137841	+	probable ABC transporter substrate binding protein	ABC transporter substrate binding proteins count to the family of extracellular ligand binding proteins. It is a component of the high affinity amino acid transport system. Similar to trembl|Q8XU51 (58%25) and to tremblnew|CAE27314 (45%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene118	http://www.ncbi.nlm.nih.gov/gene/?term=azo0119
azo0120	azo0120		azo0120	137898	138782	+	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q92LQ5 (71%25) and to trembl|Q8XU52 (69%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting eight Tmhelix.%3B~Specificity unclear	gene	gene119	http://www.ncbi.nlm.nih.gov/gene/?term=azo0120
azo0121	azo0121	livM1	livM1	138807	139763	+	putative branched-chain amino acid transport permease	Putative branched-chain amino acid transport permease. Homology to livM of S. typhimurium of 25%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: branch-chain amino acid transport system probable signal peptide probable 6 TMHs%3B~Specificity unclear	gene	gene120	http://www.ncbi.nlm.nih.gov/gene/?term=azo0121
azo0122	azo0122		azo0122	139919	141091	-	probable Fe-S cluster redox enzyme	Region start changed from 140962 to 141091 (129 bases)	gene	gene121	http://www.ncbi.nlm.nih.gov/gene/?term=azo0122
azo0123	azo0123		azo0123	141038	141463	+	putative threonine efflux protein		gene	gene122	http://www.ncbi.nlm.nih.gov/gene/?term=azo0123
azo0124	azo0124		azo0124	141533	141742	+	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted signal peptide no TMHs	gene	gene123	http://www.ncbi.nlm.nih.gov/gene/?term=azo0124
azo0125	azo0125		azo0125	141717	142061	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein%2C%3B~Conserved hypothetical protein	gene	gene124	http://www.ncbi.nlm.nih.gov/gene/?term=azo0125
azo0126	azo0126		azo0126	142061	142369	+	conserved hypothetical protein	Conserved hypothetical protein with 74%25 similarity(57%25 identity)to Conserved hypothetical protein [Sinorhizobium meliloti]. No Signal peptide reported to be present. No TMH reported to be present. Has PF07045%2CProtein of unknown function (DUF1330)This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown. TIGRFAM:acolac_sm: acetolactate synthase%2Csmall s%3B~Family membership	gene	gene125	http://www.ncbi.nlm.nih.gov/gene/?term=azo0126
azo0127	azo0127		azo0127	142468	142659	+	Hypothetical protein	Hypothetical protein%2C 40%25 identity to TrEMBL%3BQ73S36 Weak Homology with most protein hits in the database. No Domains/Features/Motifs predicted present.	gene	gene126	http://www.ncbi.nlm.nih.gov/gene/?term=azo0127
azo0128	azo0128		azo0128	142690	143106	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C 50%25 identity (62%25 similarity) to TrEMBL%3BQ7NQ67. No domains predicted TMHMM2 reporting 1 TMH's present. No signal peptide reported present.%3B~Conserved hypothetical protein	gene	gene127	http://www.ncbi.nlm.nih.gov/gene/?term=azo0128
azo0129	azo0129	tap	tap	143294	144907	+	putative dipeptide chemoreceptor	The Tap (taxis toward peptides) receptor and the periplasmic dipeptide-binding protein (DBP) of Escherichia coli together mediate chemotactic responses to dipeptides. Similar trembl|Q7P0E0 (32%25) and to SWISSPROT:MCPC_SALTY (23%25). Pfam(PF00015): Bacterial chemotaxis sensory transducer Pfam (PF00672):HAMP domain TMHMM reporting two TMH. SignalP reporting Signalpeptid.%3B~Specificity unclear	gene	gene128	http://www.ncbi.nlm.nih.gov/gene/?term=azo0129
azo0130	azo0130	nahY	nahY	145152	146765	+	putative aromatic hydrocarbon chemotaxis transducer	The ability of bacteria to recognize and swim toward aromatic hydrocarbons is possibly an important prelude to their degradation. In Pseudomonas putida G7%2CNahY is the receptor required for the chemotaxis to naphthalene. Similar to trembl|Q7NU44 (38%25) and to trembl|Q7NY58 (33%25). Smart: HAMP domain Pfam (PF00015): Methyl-accepting chemotaxis protein (MCP) signalling domain SignalP reporting Signal Peptide.%3B~Specificity unclear	gene	gene129	http://www.ncbi.nlm.nih.gov/gene/?term=azo0130
azo0131	azo0131	dmpI	dmpI	146889	147092	+	probable 4-oxalocrotonate tautomerase	Probable tautomerase lin2709 (EC 5.3.2.2). TREMBL:Q7UE84: 67%25 identity%2C 86%25 similarity InterPro:IPR004370%3B Taut. ProDom: PD404143 InterPro: 4-oxalocrotonate tautomerase taut: 4-oxalocrotonate tautomerase No signal peptide no TMH's%3B~High confidence in function and specificity	gene	gene130	http://www.ncbi.nlm.nih.gov/gene/?term=azo0131
azo0132	azo0132		azo0132	147273	148154	+	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear	gene	gene131	http://www.ncbi.nlm.nih.gov/gene/?term=azo0132
azo0133	azo0133	ilvE1	ilvE1	148401	149321	+	branched-chain-amino-acid transaminase	Branched-chain amino acid aminotransferase (EC 2.6.1.42) (BCAT). Acts on leucine isoleucine and valine (By similarity). InterPro: Aminotransferases class-IV%3B~High confidence in function and specificity	gene	gene132	http://www.ncbi.nlm.nih.gov/gene/?term=azo0133
azo0134	azo0134	ydaM	ydaM	149318	150751	-	putative response regulator	Hypothetical response regulator%2C TREMBL: trembl|Q7MSI2 (24%25 Wolinella succinogenes%2C hypothetical protein ws0414) InterPro: IPR001610 PAC. IPR000014 PAS. IPR001789 Response_reg. IPR000160 GGDEF. Pfam: PF00990 GGDEF domain. PF00072 Response_reg. PF00785 PAC. PF00989 PAS. TIGRFAM: TIGR00254 putative diguanylate cyclase (GGDEF) domain. TIGR00229 PAS domain S-box.%3B~Conserved hypothetical protein	gene	gene133	http://www.ncbi.nlm.nih.gov/gene/?term=azo0134
azo0135	azo0135		azo0135	150748	151149	-	putative response regulator	Putative response regulator	gene	gene134	http://www.ncbi.nlm.nih.gov/gene/?term=azo0135
azo0136	azo0136		azo0136	151184	153406	-	putative hybrid sensor and regulator protein	Putative hybrid sensor and regulator protein	gene	gene135	http://www.ncbi.nlm.nih.gov/gene/?term=azo0136
azo0137	azo0137	amiC1	amiC1	153403	154701	-	putative aliphatic amidase expression-regulating protein	Aliphatic amidase expression-regulating protein%2CAmiC regulates the expression of the inducible aliphatic amidase activity in Pseudomonas aeruginosa. Similar to sprot|AMIC_PSEAE (31%25) and to trembl|P74390 (50%25).Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene136	http://www.ncbi.nlm.nih.gov/gene/?term=azo0137
azo0138	azo0138		azo0138	154860	155846	+	conserved hypothetical protein	Conserved hypothetical protein.Similarity to b.subtilis bmru and to synechocystis pcc 6803 sll0036. Identities %3D 29/85 (34%25) Entry name SWISSPROT:YEGS_ECOLI Prim. accession # P76407 InterPro IPR005218%3B Cons_hypoth147. IPR001206%3B DAGKc. Pfam PF00781%3B DAGKc%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0	gene	gene137	http://www.ncbi.nlm.nih.gov/gene/?term=azo0138
azo0139	azo0139	cpdA	cpdA	155860	156708	+	probable phosphodiesterase	Serine/threonine (S/T) phosphatases catalyse the dephosphorylation of phosphoserine and phosphothreonine residues. In mammalian tissues four different types of PP have been identified and are known as PP1%2C PP2A%2C PP2B and PP2C. Except for PP2C%2C these enzymes are evolutionary related. The catalytic regions of the proteins are well conserved TREMBL:Q7VZQ9: 41%25 identity%2C 50%25 similarity InterPro:IPR004843%3B M-ppestrase. Pfam:PF00149%3B Metallophos InterPro: Serine/threonine specific protein phosphatase No transmembrane helices sbcd: exonuclease SbcD%3B~High confidence in function and specificity	gene	gene138	http://www.ncbi.nlm.nih.gov/gene/?term=azo0139
azo0140	azo0140		azo0140	156692	157861	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of Ralstonia eutropha of 61%25 (ZP_00167955). No domains predicted. No TMHs. No signal peptide.	gene	gene139	http://www.ncbi.nlm.nih.gov/gene/?term=azo0140
azo0141	azo0141	gidA	gidA	158045	159949	+	glucose inhibited division protein A	Glucose inhibited division protein A.%3B~High confidence in function and specificity	gene	gene140	http://www.ncbi.nlm.nih.gov/gene/?term=azo0141
azo0142	azo0142	gidB	gidB	159946	160584	+	probable methyltransferase GidB	Probable methyltransferase GidB. Homology to gidB of E. coli of 47%25 (sprot|GIDB_ECOLI) Probable S-adenosyl-L-methionine dependent methyltransferase specific for a sterol and/or lipid substrate (By similarity). InterPro: Glucose inhibited division protein (IPR003682) Pfam: Glucose inhibited division protein Tigrfam: gidB: glucose-inhibited division protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene141	http://www.ncbi.nlm.nih.gov/gene/?term=azo0142
azo0143	azo0143	parA1	parA1	160716	161486	+	ParA family protein	putative chromosome partitioning protein%3B~High confidence in function and specificity	gene	gene142	http://www.ncbi.nlm.nih.gov/gene/?term=azo0143
azo0144	azo0144		azo0144	161496	161789	+	probable nucleotidyltransferase	Hypothetical protein MJ0435. trembl:Q8DGT1:51%25 identity%2C 64%25 similarity InterPro: IPR002934%3B NTP_transf. Pfam: PF01909%3B NTP_transf_2 No signal peptide (Signal P predicted) No transmembrane helices (TMHMM predicted). hstdl_phs_rel: histidinol phosphatase-r%3B~Specificity unclear	gene	gene143	http://www.ncbi.nlm.nih.gov/gene/?term=azo0144
azo0145	azo0145		azo0145	161786	162148	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to TLL2231 of Thermosynechococcus elongatus of 34%25 (tremble:Q8DGT2). Signal peptide present. No TMH reported present. Has (IPR008201)PF01934 Protein of unknown function DUF86%3BThe function of members of this family is unknown.%3B~Conserved hypothetical protein	gene	gene144	http://www.ncbi.nlm.nih.gov/gene/?term=azo0145
azo0146	azo0146	parB	parB	162150	163013	+	probable chromosome partitioning protein ParB	Probable chromosome partitioning protein%2C%3B~High confidence in function and specificity	gene	gene145	http://www.ncbi.nlm.nih.gov/gene/?term=azo0146
azo0147	azo0147		azo0147	163114	165879	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS05051 of Ralstonia solanacearum of 45%25 (trembl|Q8Y1A4(SRS)). TMHMM2 reporting the presence of 26 TMH's. Signal P reporting Signal Peptide present. Coils2 program reporting presence of Coiled coil.%3B~Conserved hypothetical protein	gene	gene146	http://www.ncbi.nlm.nih.gov/gene/?term=azo0147
azo0148	azo0148		azo0148	165901	167784	-	putative acyltransferase family protein	Similar to the Aas bifunctional protein [includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-gpe acyltransferase)%3B acyl-acyl carrier protein synthetase (acyl-acp synthetase)].Plays a role in lysophospholipid acylation. 25%25 Acyltransferase.IPR000873%3B AMP-bind. Pfam:PF01553%3B Acyltransferase%3B 1.PF00501%3B AMP-binding%3B 1. TMhelix:10%3B~Function unclear	gene	gene147	http://www.ncbi.nlm.nih.gov/gene/?term=azo0148
azo0149	azo0149	uxuA	uxuA	167781	169031	-	putative mannonate dehydratase	tremblnew|AAR36422:35%25 identity%2C 46%25 similarity EMBL:AE017218%3B AAR36422.1%3B TIGR:GSU3030%3B This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6. Interpro:IPR004628%3BMan_dehyd SignalP predicted signal peptide present. No. of transmembrane helices: 1 (TMHMM predicted) pyrC_dimer: dihydroorotase homodimeric%3B~Specificity unclear	gene	gene148	http://www.ncbi.nlm.nih.gov/gene/?term=azo0149
azo0150	azo0150	aas	aas	169028	171166	-	bifunctional Aas protein	AAS bifunctional protein [Includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-GPE acyltransferase)%3B Acyl-acyl carrier protein synthetase (Acyl-ACP synthetase)]. PLAYS A ROLE IN LYSOPHOSPHOLIPID ACYLATION. TRANSFERS FATTY ACIDS TO THE 1-POSITION VIA AN ENZYME-BOUND ACYL-ACP INTERMEDIATE IN THE PRESENCE OF ATP AND MG(2+). ITS PHYSIOLOGICAL FUNCTION IS TO REGENERATE PTDETN FROM 2-ACYL-GPE FORMED BY TRANSACYLATION REACTIONS OR DEGRADATION BY PHOSPHOLIPASE A1%2C TREMBL:Q8FEA6 (52%25 identity)%3B SWISSPROT:P31119 (52%25 identity). Pfam (PF00501): AMP-binding enzyme. Pfam (PF01553): Acyltransferase. TIGRFAM (TIGR00530): 1-acyl-sn-glycerol-3-phosphate acyltransferases. SignalP reporting signal peptide.%3B~High confidence in function and specificity	gene	gene149	http://www.ncbi.nlm.nih.gov/gene/?term=azo0150
azo0151	azo0151	smtB	smtB	171247	171558	-	putative transcriptional repressor	Putative transcriptional repressor%2C%3B~High confidence in function and specificity	gene	gene150	http://www.ncbi.nlm.nih.gov/gene/?term=azo0151
azo0152	azo0152		azo0152	171735	172085	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to BB4612 of Bordetella bronchiseptica of 37%25 (trembl|Q7WEM2(SRS)). No domains predicted. signal peptide 3 TMHs%3B~Conserved hypothetical protein	gene	gene151	http://www.ncbi.nlm.nih.gov/gene/?term=azo0152
azo0153	azo0153	atpB	atpB	172088	172936	+	probable ATP synthase A chain	Probable ATP synthase A chain (Protein 6). Homology to atpB of E. coli of 47%25 (sprot|ATP6_ECOLI). Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2C CF(1) - the catalytic core - and CF(0) -the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2C gamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Subunit A might be component of the proton channel%3B it may play a direct role in the translocation of protons across the membrane. InterPro: ATP synthase A subunit (IPR000568) Pfam: ATP synthase A chain no signal peptide probable 6 TMHs%3B~High confidence in function and specificity	gene	gene152	http://www.ncbi.nlm.nih.gov/gene/?term=azo0153
azo0154	azo0154	atpE	atpE	172992	173237	+	probable ATP synthase C chain	ATP synthase C chain. Homology to atpE of E. coli of 48%25 (sprot|ATPL_ECOLI). Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2C CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2C gamma%2Cdelta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Pfam: ATP synthase subunit C probable signal peptide probable 1 TMH%3B~High confidence in function and specificity	gene	gene153	http://www.ncbi.nlm.nih.gov/gene/?term=azo0154
azo0155	azo0155	atpF	atpF	173279	173752	+	probable ATP synthase B chain	Probable ATP synthase B chain. Homology to atpF of E. coli of 43%25 (sprot|ATPF_ECOLI) Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Pfam: ATP synthase B/B' CF(0) no signal peptide 1 TMHs%3B~High confidence in function and specificity	gene	gene154	http://www.ncbi.nlm.nih.gov/gene/?term=azo0155
azo0156	azo0156	atpH	atpH	173756	174289	+	putative ATP synthase delta chain	putive ATP synthase delta chain. Homology to atpH of E. coli of 32%25 (sprot|ATPD_ECOLI). Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Subunit delta seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction. InterPro: ATP synthase delta (OSCP) subunit (IPR000711) Pfam: ATP synthase delta (OSCP) subunit no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene155	http://www.ncbi.nlm.nih.gov/gene/?term=azo0156
azo0157	azo0157	atpA	atpA	174303	175841	+	ATP synthase alpha chain	ATP synthase alpha chain. Homology to atpA of E. coli of 70%25 (sprot|ATPA_ECOLI). Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Pfam: ATP syntahse alpha/beta family%2Cbeta barrel domain%3B ATP synthase alpha/beta chain%2C C terminal domain%3B ATP synthase alpha/beta chain%2C nucleotide binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene156	http://www.ncbi.nlm.nih.gov/gene/?term=azo0157
azo0158	azo0158	atpG	atpG	175863	176732	+	probable ATP synthase gamma chain	Probable ATP synthase gamma chain. Homology to atpG of E. coli of 58%25 (sprot|ATPG_ECOLI) Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. PRODUCES ATP FROM ADP IN THE PRESENCE OF A PROTON GRADIENT ACROSS THE MEMBRANE. THE GAMMA CHAIN IS BELIEVED TO BE IMPORTANT IN REGULATING ATPASE ACTIVITY AND THE FLOW OF PROTONS THROUGH THE CF(0) COMPLEX. InterPro: ATP synthase gamma subunit(IPR000131) Pfam: ATP synthase no TMHs no signal peptide%3B~High confidence in function and specificity	gene	gene157	http://www.ncbi.nlm.nih.gov/gene/?term=azo0158
azo0159	azo0159	atpD	atpD	176757	178157	+	ATP synthase beta chain	ATP synthase beta chain. Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is the catalytic subunit. InterPro: ATP synthase alpha and beta subunit central region(IPR000194)%3B ATP synthase alpha and beta subunit%2C N-terminal (IPR004100)%3B ATP synthase alpha and beta subunit%2C C-terminal (IPR000793)%3B AAA ATPase superfamily (IPR003593) Pfam: ATP synthase alph/beta family%2C beta-berrel domain%3B ATP synthase alph/beta family%2Cnucleotid binding domain%3B ATP synthase alpha/beta chain%2C C terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene158	http://www.ncbi.nlm.nih.gov/gene/?term=azo0159
azo0160	azo0160	atpC	atpC	178210	178635	+	probable ATP synthase epsilon chain	Probable ATP synthase epsilon chain. Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2C CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2Cbeta%2C gamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. InterPro: ATP synthase Delta/Epsilon chain (IPR001469) Pfam: ATP synthase%2C Dleta/Epsilon chain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene159	http://www.ncbi.nlm.nih.gov/gene/?term=azo0160
azo0161	azo0161		azo0161	178705	179283	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc0460 of R. solanacearum of 39%25 (trembl|Q8Y276(SRS) Pfam: DUF1243 This family consists of a number of hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. no signal peptide no TMHs	gene	gene160	http://www.ncbi.nlm.nih.gov/gene/?term=azo0161
azo0162	azo0162	ubiE1	ubiE1	179327	180064	-	ubiquinone/menaquinone biosynthesis methyltransferase	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-). Methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-14-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-14-benzoquinol (DMQH2) (By similarity). InterPro: ubiE/COQ5 methyltransferase hemK_rel_arch: methylase putative%3B~High confidence in function and specificity	gene	gene161	http://www.ncbi.nlm.nih.gov/gene/?term=azo0162
azo0163	azo0163		azo0163	180072	180494	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to rs04443 of R. solanacearum of 69%25 (trembl|Q8Y279). Pfam: PF06155%2CProtein of unknown function (DUF971) Interpro: IPR010376%3B This family consists of several short bacterial proteins and one sequence (Q8RZ62) from Oryza sativa. The function of this family is unknown. No Signal Peptide. No TMH present.	gene	gene162	http://www.ncbi.nlm.nih.gov/gene/?term=azo0163
azo0164	azo0164	phoB	phoB	180644	181354	+	phosphate regulon transcriptional regulatory protein	Phosphate regulon transcriptional regulatory protein%2C%3B~High confidence in function and specificity	gene	gene163	http://www.ncbi.nlm.nih.gov/gene/?term=azo0164
azo0165	azo0165	phoR	phoR	181446	182717	+	phosphate regulon sensor protein	Phosphate regulon sensor protein%2C 3 Signal P reporting signal peptide TMHMM reporting 1 transmembrane helices. MEMBER OF THE TWO-COMPONENT REGULATORY SYSTEM PHOR/PHOB INVOLVED IN THE PHOSPHATE REGULON GENES EXPRESSION. PHOR MAY FUNCTION AS A MEMBRANE-ASSOCIATED PROTEIN KINASE THAT PHOSPHORYLATES PHOB IN RESPONSE TO ENVIRONMENTAL SIGNALS.%3B~High confidence in function and specificity	gene	gene164	http://www.ncbi.nlm.nih.gov/gene/?term=azo0165
azo0166	azo0166		azo0166	182683	184287	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA3023 of Azoarcus sp. EbN1 of 61%25 (trembl:Q5P4D4). No domains predicted. No TMHs. No signal peptide.	gene	gene165	http://www.ncbi.nlm.nih.gov/gene/?term=azo0166
azo0167	azo0167		azo0167	184317	184733	-	conserved hypothetical protein	55%25 HIT. Pfam:PF01230%3B HIT%3B 1. The Histidine Triad (HIT) motif%2C His-phi-His-phi-His-phi-phi (phi%2C a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms.	gene	gene166	http://www.ncbi.nlm.nih.gov/gene/?term=azo0167
azo0168	azo0168		azo0168	184801	185625	-	conserved hypothetical glutamine amidotransferases class-II (Gn-AT)%2CYafJ-type	Conserved hypothetical glutamine amidotransferases class-II (Gn-AT)%2C YafJ-type. Homology to ebA3026 of Azoarcus sp. EbN1 of 75%25 (gnl|keqq|eba:ebA3026(KEGG)). Pfam: Glutamine amidotransferases class-II. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes%2C eukaryotes and archaea. YafJ has an Ntn hydrolase%3B~Conserved hypothetical protein	gene	gene167	http://www.ncbi.nlm.nih.gov/gene/?term=azo0168
azo0169	azo0169		azo0169	185689	186207	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bll7463 of B. japonicum of 30%25 (tremble:Q89DH6). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene168	http://www.ncbi.nlm.nih.gov/gene/?term=azo0169
azo0170	azo0170	gatB	gatB	186300	187760	-	glutamyl-tRNA(GLN) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-) (Asp/Glu-ADT subunit B). Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)%3B~High confidence in function and specificity	gene	gene169	http://www.ncbi.nlm.nih.gov/gene/?term=azo0170
azo0171	azo0171		azo0171	187818	188330	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to an orf of Dechloromonas aromatica of 41%25 (gi|46141061|ref|ZP_00152875.2|(NBCI ENTREZ)). No domains predicted. Signal P reporting signal peptide present. NO TMH present.%3B~Conserved hypothetical protein	gene	gene170	http://www.ncbi.nlm.nih.gov/gene/?term=azo0171
azo0172	azo0172	gatA	gatA	188336	189799	-	glutamyl-tRNA(GLN) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-) (Glu-ADT subunit A). Furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu- tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) (By similarity). InterPro: Glutamyl-tRNA(Gln) amidotransferase A subunit gatA: glutamyl-tRNA(Gln) amidotransferase%3B~High confidence in function and specificity	gene	gene171	http://www.ncbi.nlm.nih.gov/gene/?term=azo0172
azo0173	azo0173	gatC	gatC	189852	190139	-	glutamyl-tRNA(GLN) amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.-) (Glu-ADT subunit C). Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).%3B~High confidence in function and specificity	gene	gene172	http://www.ncbi.nlm.nih.gov/gene/?term=azo0173
azo0174	azo0174	mreB	mreB	190256	191299	+	rod shape-determining protein MreB	Rod shape-determining protein mreB. INVOLVED IN FORMATION OF THE ROD SHAPE OF THE CELL. MAY ACT AS A NEGATIVE REGULATOR OF FTSI. InterPro: Cell shape determining protein MreB/Mrl mreB: cell shape determining protein%3B~High confidence in function and specificity	gene	gene173	http://www.ncbi.nlm.nih.gov/gene/?term=azo0174
azo0175	azo0175	mreC	mreC	191345	192262	+	rod shape-determining protein	Rod shape-determining protein mreC. Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins.%3B~High confidence in function and specificity	gene	gene174	http://www.ncbi.nlm.nih.gov/gene/?term=azo0175
azo0176	azo0176	mreD	mreD	192266	192787	+	rod shape-determining protein	Rod shape-determining protein mreD. Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins.%3B~High confidence in function and specificity	gene	gene175	http://www.ncbi.nlm.nih.gov/gene/?term=azo0176
azo0177	azo0177	pbpA	pbpA	192797	194686	+	penicillin-binding protein	Penicillin-binding protein 2 (PBP-2). CELL WALL FORMATION%3B PBP2 IS RESPONSIBLE FOR THE DETERMINATION OF THE ROD SHAPE OF THE CELL. ITS SYNTHESIZE CROSS- LINKED PEPTIDOGLYCAN FROM THE LIPID INTERMEDIATES. InterPro: Penicillin binding protein transpeptidase domain%3B~High confidence in function and specificity	gene	gene176	http://www.ncbi.nlm.nih.gov/gene/?term=azo0177
azo0178	azo0178	rodA	rodA	194683	195819	+	rod shape-determining protein	Rod shape-determining protein rodA. THIS IS ONE OF THE PROTEINS RESPONSIBLE FOR THE ROD SHAPE OF THE CELL. IT IS REQUIRED FOR THE EXPRESSION OF THE ENZYMATIC ACTIVITY OF PBP2 WHICH IS THOUGHT TO SYNTHESIZE PEPTIDOGLYCAN IN THE STEP OF INITIATION OF CELL ELONGATION.%3B~High confidence in function and specificity	gene	gene177	http://www.ncbi.nlm.nih.gov/gene/?term=azo0178
azo0179	azo0179	rlpA	rlpA	195800	196840	+	lipoprotein	RlpA-like protein precursor.%3B~Function unclear	gene	gene178	http://www.ncbi.nlm.nih.gov/gene/?term=azo0179
azo0180	azo0180	dacC	dacC	196966	198096	+	probable D-alanyl-D-alanine carboxypeptidase	Probable D-alanyl-D-alanine carboxypeptidase. Homology to dacD of E. coli of 41%25 (sprot|DACD_ECOLI) Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Pfam: D-alanyl-D-alanine carboxypeptidase signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene179	http://www.ncbi.nlm.nih.gov/gene/?term=azo0180
azo0181	azo0181	daaA	daaA	198136	198993	+	D-alanine transaminase	D-alanine aminotransferase (EC 2.6.1.21) (D-aspartate aminotransferase) (D-amino acid aminotransferase) (D-amino acid transaminase) (DAAT). Acts on the D-isomers of alanine Leucine aspartate glutamate aminobutyrate norvaline and asparagine (By similarity). InterPro: Aminotransferases class-IV%3B~High confidence in function and specificity	gene	gene180	http://www.ncbi.nlm.nih.gov/gene/?term=azo0181
azo0182	azo0182		azo0182	198986	199267	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RSC0326 of Ralstonia solanacearum of 53%25 (tremble:Q8Y2K9) Has PF04359%3BProtein of unknown function (DUF493)%3BThis family includes several proteins of uncharacterised function. InterPro%3BIPR007454 No Signal Peptdie or TMH present.	gene	gene181	http://www.ncbi.nlm.nih.gov/gene/?term=azo0182
azo0183	azo0183	lipB	lipB	199264	199947	+	LipB protein	Lipoate-protein ligase B (EC 6.-.-.-) (Lipoate biosynthesis protein B). Involved in the attachment of lipoyl groups to proteins by creating an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoylated proteins (By similarity). InterPro: Lipoate-protein ligase B lipB: lipoate-protein ligase B%3B~High confidence in function and specificity	gene	gene182	http://www.ncbi.nlm.nih.gov/gene/?term=azo0183
azo0184	azo0184	lipA	lipA	199989	200936	+	lipoic acid synthetase	Lipoic acid synthetase (Lip-syn) . Synthesis of alpha-(+)-lipoic acid. It may be involved in the sulfur insertion chemistry in lipoate biosynthesis (By similarity). InterPro: Lipoate synthase lipA: lipoic acid synthetase%3B~High confidence in function and specificity	gene	gene183	http://www.ncbi.nlm.nih.gov/gene/?term=azo0184
azo0185	azo0185		azo0185	201005	201682	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PP1518 of P. putida of 54%25 (trembl|Q88MQ2(SRS) No domains predicted Signal P reporting signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene184	http://www.ncbi.nlm.nih.gov/gene/?term=azo0185
azo0186	azo0186	rep	rep	201756	203750	+	ATP-dependent DNA helicase	ATP-dependent DNA helicase rep (EC 3.6.1.-). REP HELICASE IS A SINGLE-STRANDED DNA-DEPENDENT ATPASE INVOLVED IN DNA REPLICATION%3B IT CAN INITIATE UNWINDING AT A NICK IN THE DNA. IT BINDS TO THE SINGLE-STRANDED DNA AND ACTS IN A PROGRESSIVE FASHION ALONG THE DNA IN THE 3 TO 5 DIRECTION (BY SIMILARITY). InterPro: UvrD/REP helicase.%3B~High confidence in function and specificity	gene	gene185	http://www.ncbi.nlm.nih.gov/gene/?term=azo0186
azo0187	azo0187		azo0187	203837	204298	-	conserved hypothetical cytochrome c5	Conserved hypothetical cytochrome c5. Homology to vc0168 of V. cloreae of 38%25 (tremble: Q9KVH8). This basic c-type monoheme cytochrome has an unusally low redox potential compaired with mitochaondrial cytochrome C. It is reactive with cytochrome c oxidase but not with reductase. Pfam: Cytrochrome C probable signal peptide no TMHs%3B~Family membership	gene	gene186	http://www.ncbi.nlm.nih.gov/gene/?term=azo0187
azo0189	azo0189	yueD	yueD	210014	210739	-	putative benzil reductase	Putative benzil reductase. Homology to yueD of B. cereus of 32%25 (trembl|Q8RJ14). Belongs to the short-chain dehydrogenases/reductases (SDR) family. Transform benzil to (S)-benzion. Interpro: short-chain dehydrogenase/reductase SDR (IPR002198) Pfam: short chain dehydrogenase (PF00106) no signal peptide no TMHs%3B~Family membership	gene	gene192	http://www.ncbi.nlm.nih.gov/gene/?term=azo0189
azo0190	azo0190		azo0190	210838	211857	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of R. oxalatica of 31%25 (trembl|Q84ES1). Pfam: 37-kD nucleoid-associaed bacterial protein The Escherichia coli nucleoid contains DNA in a condensed but functional form. Analysis of proteins released from isolated spermidine nucleoids after treatment with DNase I reveals significant amounts of two proteins not previously detected in wild-type Escherichia coli. Partial amino-terminal sequencing has identified them as the products of rdgC and yejK. no signal peptide no TMHs	gene	gene193	http://www.ncbi.nlm.nih.gov/gene/?term=azo0190
azo0191	azo0191		azo0191	211933	212409	+	conserved hypothetical protein	Entry name TREMBL:Q988L8 Prim. accession # Q988L8 InterPro IPR002539%3B MaoC_dehydratas. Identities %3D 63/131 (48%25) Pfam PF01575%3B MaoC_dehydratas%3B 1. Number of predicted TMHs: 0 Probable MaoC protein (Phenylacetic acid degradation protein paaZ).	gene	gene194	http://www.ncbi.nlm.nih.gov/gene/?term=azo0191
azo0192	azo0192	apbA1	apbA1	212402	213313	+	2-dehydropantoate 2-reductase	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). apbA_panE: 2-dehydropantoate 2-reductase%3B~Function unclear	gene	gene195	http://www.ncbi.nlm.nih.gov/gene/?term=azo0192
azo0193	azo0193	trxC1	trxC1	213319	213780	-	probable protein-disulfide reductase	Probable protein-disulfide reductase. Homology with trxC of E. coli of 45%25 (AAB88587). Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. InterPro: Thioredoxin Tigrfam: redox_disulf_1: redox-active disulfide Pfam: Thioredoxin no TMHs no signal peptide%3B~Family membership	gene	gene196	http://www.ncbi.nlm.nih.gov/gene/?term=azo0193
azo0194	azo0194	hvrA1	hvrA1	213935	214333	+	putative trans-acting regulatory protein HvrA	Putative trans-acting regulatory protein. Homology to hvrA of R. capsulatus of 27%25 (sprot|HVRA_RHOCA). The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions (e.g. light). Interpro: Histone -like nucleotide-structuring protein H-Ns (IPR001801) Pfam: H-NS histone family no signal peptide no TMHs%3B~Family membership	gene	gene197	http://www.ncbi.nlm.nih.gov/gene/?term=azo0194
azo0195	azo0195		azo0195	214378	214626	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to CV3728 of Chromobacterium violaceum of 57%25 (tremble:Q7NRQ2) No domains predicted. No TMHs signal peptide present%3B~Conserved hypothetical protein	gene	gene198	http://www.ncbi.nlm.nih.gov/gene/?term=azo0195
azo0196	azo0196		azo0196	214688	215722	-	consrved hypothetical transcription factor	Conserved hypothetical transcription factor%2C%3B~Conserved hypothetical protein	gene	gene199	http://www.ncbi.nlm.nih.gov/gene/?term=azo0196
azo0197	azo0197		azo0197	215834	216118	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide. 1 TMHs	gene	gene200	http://www.ncbi.nlm.nih.gov/gene/?term=azo0197
azo0198	azo0198	pabB	pabB	216106	217965	-	para-aminobenzoate synthase component I / 4-amino-4-deoxycho	Para-aminobenzoate synthase component I (EC 4.1.3.-) (ADC synthase). CATALYZES THE BIOSYNTHESIS OF 4-AMINO-4-DEOXYCHORISMATE (ADC) FROM CHORISMATE AND GLUTAMINE. InterPro: Anthranilate synthase component I and chorismate binding enzyme pabB: para-aminobenzoate synthase component I%3B~Specificity unclear	gene	gene201	http://www.ncbi.nlm.nih.gov/gene/?term=azo0198
azo0199	azo0199	sbcD	sbcD	218051	219196	+	exonuclease SbcD%2C putative	Exonuclease sbcD homolog. Probably involved in genetic recombination. InterPro: DNA repair exonuclease. sbcd: exonuclease SbcD.%3B~High confidence in function and specificity	gene	gene202	http://www.ncbi.nlm.nih.gov/gene/?term=azo0199
azo0200	azo0200	sbcC	sbcC	219193	222264	+	exonuclease SbcC%2C putative	Nuclease sbcCD subunit C. SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3->5 double strand exonuclease that can open hairpins. It also has a 5 single-strand endonuclease activity (By similarity). sbcc: exonuclease SbcC.%3B~High confidence in function and specificity	gene	gene203	http://www.ncbi.nlm.nih.gov/gene/?term=azo0200
azo0201	azo0201		azo0201	222387	223202	-	probable aryl-ester hydrolase	Arylesterase (EC 3.1.1.2) (Aryl-ester hydrolase) pir:C75401:39%25 identity%2C 52%25 similarity:hydrolase-related protein - Deinococcus radiodurans . IS A BIFUNCTIONAL ENZYME CAPABLE OF BOTH ESTER HYDROLYSIS AND HALOGENATION. ACTS ON MANY PHENOLIC ESTERS. Pfam: PF00561: alpha/beta hydrolase fold (74-271) InterPro: IPR000073: Alpha/beta hydrolase fold IPR000379: Esterase/lipase/thioesterase Pfam:Zn binding dehydrogenase mobB: molybdopterin-guanine dinucleotid%3B~Family membership	gene	gene204	http://www.ncbi.nlm.nih.gov/gene/?term=azo0201
azo0202	azo0202		azo0202	223457	224176	+	conserved hypothetical protein	Conserved hypothetical protein. Homology only to r01975 of S. meliloti of 31%25 (trembl|Q92P21). no signal peptide no TMHs	gene	gene205	http://www.ncbi.nlm.nih.gov/gene/?term=azo0202
azo0203	azo0203		azo0203	224493	225563	+	conserved hypothetical membrane protein	TREMBL:Q82XH5: 33%25 identity%2C 44%25 similarity InterPro:IPR007404%3B DUF457. Pfam: PF04307%3B DUF457 fnt: formate/nitrite transporter Non-secretory protein with signal peptide probability of 0.391 TMHMM predicted 4 transmembrane helices%3B~Conserved hypothetical protein	gene	gene206	http://www.ncbi.nlm.nih.gov/gene/?term=azo0203
azo0204	azo0204	bmpA	bmpA	225594	226691	-	probable lipoprotein	Description:abc transporter periplasmic binding protein.This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family Probable CD4+ T cell-stimulating antigen precursor. TREMBL: Q8XXD8: 64%25 identity%2C 79%25 similarity InterPro:IPR003760%3B Bmp. Pfam: PF02608%3B Bmp Secretory protein with high signal peptide probablity (Signal P predicted). No. of transmembrane helices: 1 (TMHMM predicted) prok_nadp_idh: isocitrate dehydrogenas%3B~Specificity unclear	gene	gene207	http://www.ncbi.nlm.nih.gov/gene/?term=azo0204
azo0205	azo0205	hipO1	hipO1	226835	228079	-	probable hippurate hydrolase	Hippurate hydrolase (EC 3.5.1.32) (Benzoylglycine amidohydrolase) (Hippuricase). TREMBL:Q7VUP2: 43%25 identity%2C 57%25 similarity InterPro%3B IPR002933%3B Peptidase_M20. InterPro%3B IPR010168%3B Pept_M20D_amidh. Pfam%3B PF01546%3B Peptidase_M20%3B 1. TIGRFAMs%3B TIGR01891%3B amidohydrolases TIGR00003: copper-ion-binding protein No signal peptide (Signal P predicted) No transmembrane helices present%3B~High confidence in function and specificity	gene	gene208	http://www.ncbi.nlm.nih.gov/gene/?term=azo0205
azo0206	azo0206		azo0206	228076	228660	-	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene209	http://www.ncbi.nlm.nih.gov/gene/?term=azo0206
azo0207	azo0207		azo0207	228700	229056	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to bb1472 of B. bronchiseptica of 46%25 (trembl|Q7WMC0). Interpro: Protein of unknown function DUF861 (IPR008579). Pfam: Cupin_3 (former DUF861) (PFO5899). This family consists of several proteins which seem to be specific to plants and bacteria. The function of this family is unknown. No signal peptide. No TMHs	gene	gene210	http://www.ncbi.nlm.nih.gov/gene/?term=azo0207
azo0208	azo0208		azo0208	229064	229267	-	Hypothetical protein	Hypothetical protein%2C 45%25 identity to TrEMBL%3BQ7U8P5. Weak Homology with hits. No domains%2Crepeats%2C motifs or features predicted Present.%3B~Function unclear	gene	gene211	http://www.ncbi.nlm.nih.gov/gene/?term=azo0208
azo0209	azo0209	agaE	agaE	229633	230862	-	probable sarcosine oxidase%2C beta subunit	Sarcosine oxidase%2Csubunit beta counts to the FAD dependent oxidoreductases. Similar to trembl|Q88AX8 (49%25) and to trembl|Q987J9 (43%25). Pfam (PF01266): FAD dependent oxidoreductase Pfam (PF01494): FAD binding domain Pfam (PF00070): Pyridine nucleotide-disulphide oxidoreductase%3B~Function unclear	gene	gene212	http://www.ncbi.nlm.nih.gov/gene/?term=azo0209
azo0210	azo0210	ooxA	ooxA	230859	232241	-	putative opine oxidase subunit A	Putative opine oxidase subunit A. Homology to ooxA of A. tumefaciens of 37%25 (sprot|OOXA_AGRT4). OXIDATIVE CLEAVAGE OF OCTOPINE INTO L-ARGININE AND PYRUVATE (BY SIMILARITY). InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327)%2C NAD-bining site (IPR000205) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs%3B~Family membership	gene	gene213	http://www.ncbi.nlm.nih.gov/gene/?term=azo0210
azo0211	azo0211		azo0211	232223	232552	-	conserved hypothetical protein		gene	gene214	http://www.ncbi.nlm.nih.gov/gene/?term=azo0211
azo0212	azo0212	prp	prp	232564	233067	-	probable proline dehydrogenase transcriptional activator	Probable proline dehydrogenase transcriptional activator. Similar to sprot|PUTR_AGRTU (31%25 Agrobacterium tumefaciens%2C proline dehydrogenase transcriptional activator prp or putR) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene215	http://www.ncbi.nlm.nih.gov/gene/?term=azo0212
azo0213	azo0213		azo0213	233142	234524	-	aminotransferase%2C class III	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (78-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase). bioA: adenosylmethionine--8-amino-7-oxononanoate aminotransferase%3B~Specificity unclear	gene	gene216	http://www.ncbi.nlm.nih.gov/gene/?term=azo0213
azo0214	azo0214		azo0214	235059	235934	-	conserved hypothetical acetyltransferase	Conserved hypothetical acetyltransferase. Homology to putative acetaltransferase (GNAT family) of P. syringae of 42%25 (trembl|Q88AY8). Pfam: Acetyltransferase (GNAT) family no signal peptide no TMHs%3B~Family membership	gene	gene217	http://www.ncbi.nlm.nih.gov/gene/?term=azo0214
azo0215	azo0215	aldH	aldH	236153	237637	+	putative aldehyde dehydrogenase (NAD+)	Putative aldehyde dehydrogenase (NAD+) (EC 1.2.1.3). Homology to adlH of E. coli of 35%25 (sprot|DHAL_ECOLI). Aldehyde dehydrogenases (EC: 1.2.1.3 and EC: 1.2.1.5) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene218	http://www.ncbi.nlm.nih.gov/gene/?term=azo0215
azo0216	azo0216	hadL	hadL	237835	238500	+	probable haloalkanoic acid dehalogenase	Probable 2-haloalkanoic acid dehalogenase (EC 3.8.1.2) (L-2-haloacid dehalogenase) (Halocarboxylic acid halidohydrolase). TREMBL:Q92Y68: 68%25 identity%2C 82%25 similarity These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids [1]. They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases InterPro:IPR006328%3B HAD_II. IPR006388%3B HAD_SF_IA_v2. IPR005834%3B Hydrolase. Pfam PF00702%3B Hydrolase rpiB_lacA_lacB: sugar-phosphate isomer No signal peptide No transmembrane helices%3B~High confidence in function and specificity	gene	gene219	http://www.ncbi.nlm.nih.gov/gene/?term=azo0216
azo0217	azo0217	ordL	ordL	238541	239833	+	FAD dependent oxidoreductase family protein	This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase%2CSarcosine oxidase beta subunit%2C D-alanine oxidase%2C D-aspartate oxidase. Similar to trembl|Q88AY5 (61%25) and to sprot|ORDL_ECOLI (32%25). Pfam (PF01266): D-amino acid oxidase ProSite (PS50205): NAD binding site%3B~Family membership	gene	gene220	http://www.ncbi.nlm.nih.gov/gene/?term=azo0217
azo0218	azo0218	dppA	dppA	239850	241457	+	putative dipeptide transport system%2C periplasmic-binding protein	Part of the ABC transporter complex dppABCD involved in dipeptide import. Similar to the dipeptide periplasmic-binding protein dppA in E.coli. DIPEPTIDE-BINDING PROTEIN OF AN OSMOTIC-SHOCKABLE TRANSPORT SYSTEM. DPPA IS ALSO REQUIRED FOR PEPTIDE CHEMOTAXIS. InterPro: Bacterial extracellular solute-binding protein family 5 Signal peptide%3B~Specificity unclear	gene	gene221	http://www.ncbi.nlm.nih.gov/gene/?term=azo0218
azo0219	azo0219	dppB	dppB	241462	242418	+	putative dipeptide transport system%2C permease protein	Part of the ABC transporter complex dppABCD involved in dipeptide import. Probably responsible for the translocation of the substrate across the membrane. Similar to the dipeptide permease protein%2C DppB in E.coli.%3B~Specificity unclear	gene	gene222	http://www.ncbi.nlm.nih.gov/gene/?term=azo0219
azo0220	azo0220	dppC	dppC	242415	243290	+	ABC transporter%2C permease protein	Part of the ABC transporter complex dppABCD involved in dipeptide import. Probably responsible for the translocation of the substrate across the membrane. Similar to the dipeptide permease protein%2C DppC in E.coli.%3B~Specificity unclear	gene	gene223	http://www.ncbi.nlm.nih.gov/gene/?term=azo0220
azo0221	azo0221	dppD	dppD	243283	245109	+	putative dipeptide transport system%2C ATP-binding protein	Part of the ABC transporter complex dppABCD involved in dipeptide import. Similar to the dipeptide transport membrane protein%2C DppD in E.coli Probably responsible for energy coupling to the transport system.%3B~Specificity unclear	gene	gene224	http://www.ncbi.nlm.nih.gov/gene/?term=azo0221
azo0222	azo0222	gabD1	gabD1	245317	246789	+	probable succinate-semialdehyde dehydrogenase [NAD(P)+]	Probable succinate-semialdehyde dehydrogenase [NAD(P)+]. Homology to gabD of R. eutropha of 68%25 (AAF19796). Catalysis of the reaction: succinate semialdehyde + NAD(P)+ + H2O %3D succinate + NAD(P)H + H+. Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene225	http://www.ncbi.nlm.nih.gov/gene/?term=azo0222
azo0223	azo0223		azo0223	247001	247369	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to an orf of Polaromonas sp. JS666 of 34%25 (ZP_00360285) . No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene226	http://www.ncbi.nlm.nih.gov/gene/?term=azo0223
azo0224	azo0224		azo0224	247500	248717	+	hypothetical outer membrane efflux protein	Hypotethical outer membrane efflux protein. Homology to PA2525 of P. aeruginosa of 25%25. signal peptide. no TMHs	gene	gene227	http://www.ncbi.nlm.nih.gov/gene/?term=azo0224
azo0225	azo0225		azo0225	248714	249310	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank no domains predicted signal peptide no TMHs	gene	gene228	http://www.ncbi.nlm.nih.gov/gene/?term=azo0225
azo0226	azo0226		azo0226	249307	250452	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to cc1787 of C. crescentus of 30%25 (trembl|Q9A7D6) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene229	http://www.ncbi.nlm.nih.gov/gene/?term=azo0226
azo0227	azo0227	czcA1	czcA1	250466	253597	+	putative cation efflux system protein	Cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA). In A.eutrophus has a low cation transport activity for cobalt%2C it is essential for the expression of cobalt%2C zinc%2C and cadmium resistance.Czca and Czcb together would act in zinc efflux nearly as effectively as the complete czc efflux system (czcABC).Belongs to the acrb/acrd/acrf family. 41%25 similarity to the A.eutrophus CzcA protein. SWISSPROT:CZCA_ALCEU:P13511 InterPro: Heavy metal efflux pump CzcA. InterPro:IPR001036%3B Acrflvin_res.IPR004763: CzcA. Pfam:PF00873%3B ACR_tran%3B 1. InterPro:TIGR00914:Heavy metal efflux pump CzcA InterPro:PF00873:Acriflavin resistance protein Signal peptide: present.%3B~High confidence in function and specificity	gene	gene230	http://www.ncbi.nlm.nih.gov/gene/?term=azo0227
azo0228	azo0228		azo0228	253594	254088	+	Hypothetical protein	Hypothetical protein%2C 32%25 identity to TrEMBL%3BQ82T66 No Signal Peptide/Features/Domains/TMH detected.	gene	gene231	http://www.ncbi.nlm.nih.gov/gene/?term=azo0228
azo0229	azo0229	fhuA1	fhuA1	254346	256517	+	probable ferrichrome-iron TonB-dependent receptor	In E.coli this receptor binds the ferrichrome-iron ligand. It interacts with the tonB protein%2C which is responsible for energy coupling of the ferrichrome-promoted iron transport system. Acts as a receptor for bacteriophage T5 as well as T1%2C phi80 and colicin M. Binding of T5 triggers the opening of a high conductance ion channel. Can also transport the antibiotic albomycin. Signal peptide.%3B~Specificity unclear	gene	gene232	http://www.ncbi.nlm.nih.gov/gene/?term=azo0229
azo0230	azo0230		azo0230	256540	257289	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RPA1846 of R.palustris of 39%25 (trembl:Q6N8Q7). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene233	http://www.ncbi.nlm.nih.gov/gene/?term=azo0230
azo0231	azo0231		azo0231	257937	259160	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to SO1157 of Shewanella oneidensis of 50%25 (trembl|Q8EHR0(SRS)). No domains predicted. Signal peptide. 7 TMHs%3B~Conserved hypothetical protein	gene	gene234	http://www.ncbi.nlm.nih.gov/gene/?term=azo0231
azo0232	azo0232	exbB1	exbB1	259217	260059	+	putative biopolymer transport protein ExbB	Putative biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 35%25. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. PFam: MotA/TolQ/ExbB proton channel family signals peptide most probable 4 TMHs%3B~Family membership	gene	gene235	http://www.ncbi.nlm.nih.gov/gene/?term=azo0232
azo0233	azo0233	exbD1	exbD1	260085	260513	+	putative biopolymer transport protein ExbD	putative biopolymer transport protein ExbD. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton grandient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership	gene	gene236	http://www.ncbi.nlm.nih.gov/gene/?term=azo0233
azo0234	azo0234	exbD2	exbD2	260535	260960	+	putative biopolymer transport protein ExbD	Putative biopolymer transport protein ExbD. Homology to exbD2 of X. campestris of 36%25 ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership	gene	gene237	http://www.ncbi.nlm.nih.gov/gene/?term=azo0234
azo0235	azo0235		azo0235	260989	261636	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to an orf of Rubrivivax gelatinosus of 55%25 (gi|47575633|ref|ZP_00245668.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene238	http://www.ncbi.nlm.nih.gov/gene/?term=azo0235
azo0236	azo0236	add	add	261880	262902	-	adenosine deaminase	Adenosine deaminase (Adenosine aminohydrolase). InterPro: Adenosine and AMP deaminase%3B~High confidence in function and specificity	gene	gene239	http://www.ncbi.nlm.nih.gov/gene/?term=azo0236
azo0237	azo0237	npd1	npd1	262974	263831	-	putative NAD-dependent deacetylase	Putative NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog). Modulates the activities of several enzymes which are inactive in their acetylated form. Similar to SWISSPROT: sprot|NPD_AERPE (27%25 Aeropyrum pernix%2C NpdA or aq_2170) Pfam: PF02146 Sir2 family.%3B~High confidence in function and specificity	gene	gene240	http://www.ncbi.nlm.nih.gov/gene/?term=azo0237
azo0238	azo0238		azo0238	263828	264958	-	hypothetical membrane protein	Hypothetical membrane protein no homology to the data bank no domains predicted no signal predicted 7 TMHs	gene	gene241	http://www.ncbi.nlm.nih.gov/gene/?term=azo0238
azo0239	azo0239		azo0239	264970	266250	-	hypothetical membrane protein	Hypothetical protein%2C showing only very low similarity to known proteins (SWISSPROT: sprot|FRAH_ANASP%3B >10%25 Anabaena sp.%2C FraH). Important Domains are: Pfam: PF00034 Cytochrome c. SMART: SM00438 ZnF_NFX TMHMM reporting 1 transmembrane helices.	gene	gene242	http://www.ncbi.nlm.nih.gov/gene/?term=azo0239
azo0240	azo0240	dctP1	dctP1	266442	267473	+	putative C4-dicarboxylate-binding periplasmic protein	Putative ABC transporter periplasmic binding protein%2C DctP: TRAP dicarboxylate transporter.Binds C4-dicarboxylates%3B part of the binding-protein- dependent transport system for uptake of c4-dicarboxylates. 28%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide:present. TMhelix:1%3B~Specificity unclear	gene	gene243	http://www.ncbi.nlm.nih.gov/gene/?term=azo0240
azo0241	azo0241	dctQ1	dctQ1	267570	268058	+	DctQ1 protein	C4-dicarboxylate transport system%2Cpermease small protein%2CDctQ. The Dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 22%25 DctQ. Pfam:PF04290%3B DctQ%3B 1. TMHelix:4.%3B~High confidence in function and specificity	gene	gene244	http://www.ncbi.nlm.nih.gov/gene/?term=azo0241
azo0242	azo0242	dctM1	dctM1	268055	269338	+	probable TRAP-type C4-dicarboxylate transport system%2C large permease component	TRAP-type C4-dicarboxylate transport system%2C large permease component%2C DctM.The Dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 34%25 DctM.IPR000252%3B DedA.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. Signal peptide: present. TMhelix:11.%3B~Specificity unclear	gene	gene245	http://www.ncbi.nlm.nih.gov/gene/?term=azo0242
azo0243	azo0243	uidR	uidR	269367	270011	-	putative TetR family transcriptional regulator	Putative TetR family transcriptional regulator%2C%3B~Family membership	gene	gene246	http://www.ncbi.nlm.nih.gov/gene/?term=azo0243
azo0244	azo0244		azo0244	270224	271426	+	membrane fusion protein	HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q8XRL2 (55%25 identity)%3B SWISSPROT:P31223 (53%25 identity). Pfam (PF00529): HlyD family secretion protein. SignalP predicting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership	gene	gene247	http://www.ncbi.nlm.nih.gov/gene/?term=azo0244
azo0245	azo0245		azo0245	271438	274596	+	RND efflux transporter%2C permease protein	Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q8E8H2 (65%25 identity)%3B SWISSPROT:P31224 (63%25 identity). InterPro (IPR001036): Acriflavin resistance protein. InterPro (IPR004764): Hydrophobe/amphiphile efflux-1 HAE1. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. Pfam (PF00873): AcrB/AcrD/AcrF family. TMHMM reporting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear	gene	gene248	http://www.ncbi.nlm.nih.gov/gene/?term=azo0245
azo0246	azo0246	oprM1	oprM1	274611	276014	+	probable outer membrane efflux protein	Probable outer membrane efflux protein. Homology to oprM of P. aeruginosa of 57%25. Component of an efflux system that confers multidrug or multible antibiotic resistence. Pfam: Outer membrane efflux protein signal peptide no TMHS%3B~Family membership	gene	gene249	http://www.ncbi.nlm.nih.gov/gene/?term=azo0246
azo0247	azo0247	bfr1	bfr1	276172	276657	+	putative bacterioferritin	Bacterioferritin (BFR) (Cytochrome B-1) (Cytochrome B-557). In E. coli is an iron-storage protein consisting of 24 identical subunits that pack together to form a highly symmetrical%2C nearly spherical shell surrounding a central cavity of about 8 nm diameter.X-ray crystallographic studies have revealed a close structural similarity between BFR and the ferritins%2C a family of iron-storage proteins found in both eukaryota and prokaryota. Key role in iron homeostasis. InterPro: Bacterioferritin. Non-secretory protein%3B~High confidence in function and specificity	gene	gene250	http://www.ncbi.nlm.nih.gov/gene/?term=azo0247
azo0248	azo0248	dksA1	dksA1	276847	277365	+	probable dnaK suppressor protein	Probable dnaK suppressor protein%2C%3B~High confidence in function and specificity	gene	gene251	http://www.ncbi.nlm.nih.gov/gene/?term=azo0248
azo0249	azo0249		azo0249	277409	277567	+	hypothetical protein	Hypothetical protein. No homology to the data bank. No domains predicted. No signal peptide. No TMHS	gene	gene252	http://www.ncbi.nlm.nih.gov/gene/?term=azo0249
azo0250	azo0250		azo0250	277561	278289	-	hypothetical flavodoxin reductase	Hypothetical flavodoxin reductase. Homology to the N-terminal part of bb4317 of B. bronchisptica of 40%25 (trembl|Q7WFF6). InterPro: Oxidoreductase FAD and NAD(P)-binding domain ((IPR001433)%3B NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidorectase FAD-binding domain%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs	gene	gene253	http://www.ncbi.nlm.nih.gov/gene/?term=azo0250
azo0251	azo0251		azo0251	278417	279895	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C 38%25 similarity to trEMBL%3BQ7WDT1%2CPutative membrane protein [BB4906] [Bordetella bronchiseptica (Alcaligenes bronchisepticus)]. TMHMM2 predicts 6 TMH's present. No signal peptide present.%3B~Family membership	gene	gene254	http://www.ncbi.nlm.nih.gov/gene/?term=azo0251
azo0252	azo0252		azo0252	279963	281318	+	conserved hypothetical protein	conserved hypothetical protein%2C 54%25 identity to TrEMBL%3BQ9JYD1 Hypothetical protein NMB1644 [NMB1644] [Neisseria meningitidis(serogroup B)]. Has PF00009:Elongation factor Tu GTP binding domain:IPR000795 ProtSyn_GTPbind: This domain contains a P-loop motif%2C also found in several other families such as Ras%2C Arf and Myosin_head. Elongation factor Tu consists of three structural domains%2C this plus two C-terminal beta barrel domains. Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis%2Cand catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini%2C and are also highly	gene	gene255	http://www.ncbi.nlm.nih.gov/gene/?term=azo0252
azo0253	azo0253		azo0253	281341	282051	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to MCA0921 of Methylococcus capsulatus of 54%25 (trembl:Q60AE3). N domains predicted. No TMHs. NO signal peptide.	gene	gene256	http://www.ncbi.nlm.nih.gov/gene/?term=azo0253
azo0254	azo0254		azo0254	282048	282746	-	conserved hypothetical polysaccharide deacetylase	Conserved polysaccharide deacetylase. Homology to rs03397 of R. solanacearum of 62%25 (trembl|Q8Y2A8). Interpro: Polysaccharide deacetylase (IPR002509). Pfam: Polysaccharide deacetylase (PF01522). The family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast%2C and endoxylanases which hydrolyses glucosidic bonds in xylan. No signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene257	http://www.ncbi.nlm.nih.gov/gene/?term=azo0254
azo0255	azo0255		azo0255	282948	283649	-	hypothetical protein	Hypothetical protein. No good homology to the data bank. No domains predicted. No TMHs. No signal peptide.	gene	gene258	http://www.ncbi.nlm.nih.gov/gene/?term=azo0255
azo0256	azo0256		azo0256	283646	286057	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rsc0429 of R. solanacearum of 52%25 (trembl|Q8Y2A7). Tigrfam: 2A0604s01: protein-export membrane protein signal peptide 10 TMHs%3B~Function unclear	gene	gene259	http://www.ncbi.nlm.nih.gov/gene/?term=azo0256
azo0257	azo0257		azo0257	286054	286632	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS03399 of R. solanacearum of 47%25 (trembl|Q8Y2A6(SRS)) No domains predicted. Signal Peptide present. No TMH reported.%3B~Conserved hypothetical protein	gene	gene260	http://www.ncbi.nlm.nih.gov/gene/?term=azo0257
azo0258	azo0258		azo0258	286629	287561	-	conserved hypothetical acetyltransferase	Conserved hypothetical acetyltransferase. Homology to rsc0431 of R. solanacearum of 61%25 (trembl|Q8Y2A5) Pfam: Bacterial lipid A biosynthesis acetyltransferase no signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene261	http://www.ncbi.nlm.nih.gov/gene/?term=azo0258
azo0259	azo0259		azo0259	287558	287869	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to xac 4098 of X. axonapodis of 36%25 (trembl|Q8PF87). No domains predicted. No signal peptide. No TMHs.	gene	gene262	http://www.ncbi.nlm.nih.gov/gene/?term=azo0259
azo0260	azo0260		azo0260	287866	289215	-	conserved hypothetical protein	Entry name:- TREMBL:Q87EI7 InterPro:- IPR000873%3B AMP-bind. Pfam:- PF00501%3B AMP-binding%3B 2. Identity :- 45%25 Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0	gene	gene263	http://www.ncbi.nlm.nih.gov/gene/?term=azo0260
azo0261	azo0261		azo0261	289232	289885	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rsc3402 of R. solanacearum of 46%25 (trembl|Q8Y2A3(SRS)) no domains predicted signal peptide 5 TMHs%3B~Conserved hypothetical protein	gene	gene264	http://www.ncbi.nlm.nih.gov/gene/?term=azo0261
azo0262	azo0262		azo0262	289885	290169	-	hypothetical protein	Similar to TREMBL:Q9PFA7 (61%25 identity)%3B TREMBL:Q87AD9 (61%25 identity)%3B SWISSPROT:Q7VKH6 (34%25 identity).%3B~Function unclear%3B~ORF1	gene	gene265	http://www.ncbi.nlm.nih.gov/gene/?term=azo0262
azo0263	azo0263		azo0263	290292	291683	-	probable two-component system histidine kinase	Probable sensor protein%2C%3B~High confidence in function and specificity	gene	gene266	http://www.ncbi.nlm.nih.gov/gene/?term=azo0263
azo0264	azo0264	qseB1	qseB1	291680	292336	-	transcriptional regulatory protein	Transcriptional regulatory protein%2C%3B~High confidence in function and specificity	gene	gene267	http://www.ncbi.nlm.nih.gov/gene/?term=azo0264
azo0265	azo0265		azo0265	292491	292763	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bd0091 of B. bacteriovorus of 52%25 (tremblnew|CAE77770(SRS)). no domains predicted. signal peptide. no TMHs.%3B~Conserved hypothetical protein	gene	gene268	http://www.ncbi.nlm.nih.gov/gene/?term=azo0265
azo0266	azo0266		azo0266	292777	293298	+	conserved hypothetical cytochrome b561 family protein	Conserved hypothetical cytochrome b561 family protein. Homology to rsc2354 of R. solanacearum of 43%25 (trembl|Q8XWW6). Involved in electron transfer from hydrogen to oxygene. Pfam: Nickel-dependen hydrogenase b-type cytochrome no signal peptide probable 4 TMHs%3B~Family membership	gene	gene269	http://www.ncbi.nlm.nih.gov/gene/?term=azo0266
azo0267	azo0267	czcB	czcB	293415	294473	+	putative membrane fusion protein	Putative membrane fusion protein. Homology to cnrb of A. eutrophus of 30%25 (pir|F47056). Proteins of the MFP family function as auxiliary proteins or 'adaptors'%2Cconnecting a primary porter in the cytoplasmic membrane of a Gram-negative bacterium with an outer membrane factor protein that serves a porin or channel function in the outer membrane. In A. eutrophus is this protein involved in cobalt and nickel resistance. No domains predicted. No signal peptide No TMHs%3B~Family membership	gene	gene270	http://www.ncbi.nlm.nih.gov/gene/?term=azo0267
azo0268	azo0268	czcA2	czcA2	294470	297574	+	putative cation efflux system protein	Cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA). In A.eutrophus has a low cation transport activity for cobalt%2C it is essential for the expression of cobalt%2C zinc%2C and cadmium resistance.Czca and Czcb together would act in zinc efflux nearly as effectively as the complete czc efflux system (czcABC).Belongs to the acrb/acrd/acrf family. 41%25 similarity to the A.eutrophus CzcA protein. SWISSPROT:CZCA_ALCEU:P13511 InterPro: Heavy metal efflux pump CzcA. InterPro:IPR001036%3B Acrflvin_res.IPR004763: CzcA. Pfam:PF00873%3B ACR_tran%3B 1. InterPro:TIGR00914:Heavy metal efflux pump CzcA InterPro:PF00873:Acriflavin resistance protein Signal peptide: present.%3B~High confidence in function and specificity	gene	gene271	http://www.ncbi.nlm.nih.gov/gene/?term=azo0268
azo0269	azo0269		azo0269	297571	297885	+	conserved hypothetical protein	Conserved hypothetical protein.30%25 identical to TrEMBL%3B Q89MS9. Signal Peptide present.	gene	gene272	http://www.ncbi.nlm.nih.gov/gene/?term=azo0269
azo0270	azo0270		azo0270	297885	299159	+	hypothetical secreted protein	Hypothetical secreted protein. Homology to cnfc of Ralstonia sp CH34 of 28%25 (tremblnew|CAB82451(SRS). Pfam: outer membrane protein. Interpro: Type I antifreeze protein (IPR000104). singal peptide. no TMHs	gene	gene273	http://www.ncbi.nlm.nih.gov/gene/?term=azo0270
azo0271	azo0271		azo0271	299301	300887	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03000974 of Dechloromonas aromatica of 68%25 (gi|46140980|ref|ZP_00152750.2|(NBCI ENTREZ)). Pfam: Elongator protein 3%2C MiaB family%2C Radical SAM. This superfamily contains MoaA%2C NifB%2C PqqE%2C coproporphyrinogen III oxidase%2C biotin synthase and MiaB families%2C and includes a representative in the eukaryotic elongator subunit%2C Elp-3. Some members of the family are methyltransferases%3B Pfam: B12 binding domain. This domain binds to B12 (adenosylcobamide)%2C it is found in several enzymes%2C such as glutamate mutase Q05488%2C methionine synthase Q99707 and methylmalonyl-CoA mutase. no signal peptide. no TMHs	gene	gene274	http://www.ncbi.nlm.nih.gov/gene/?term=azo0271
azo0272	azo0272		azo0272	301090	301368	-	hypothetical protein	Hypothetical protein. No homology to protein of similar size in the data bank. No domains predicted. No signal peptide. No TMHs	gene	gene275	http://www.ncbi.nlm.nih.gov/gene/?term=azo0272
azo0273	azo0273	sigW	sigW	301346	301972	-	putative ECF-family RNA polymerase sigma factor	Putative RNA polymerase sigma factor%2C Myxococcus xanthus carQ%3B Alcaligenes eutrophus plasmid pMOL28-encoded cnrH%3B Escherichia coli fecI%3B Pseudomonas syringae hrpL%3B rpoE from Escherichia coli%2C Salmonella typhimurium and Haemophilus influenzae%3B Streptomyces coelicolor sigE%3B and Bacillus subtilis sigma factors sigV%2C sigX%2C sigY and sigZ.%3B~High confidence in function and specificity	gene	gene276	http://www.ncbi.nlm.nih.gov/gene/?term=azo0273
azo0274	azo0274		azo0274	301969	302409	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to XCC0845 of X. campestris of 30%25 (trembl|Q8PC89). No domains predicted. Signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene277	http://www.ncbi.nlm.nih.gov/gene/?term=azo0274
azo0275	azo0275		azo0275	302583	302924	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to CC3220 of Caulobacter crescentus of 34%25 (trembl|Q9A3I4(SRS)) No domains predicted. Signal Peptide present. NO TMH present.%3B~Conserved hypothetical protein	gene	gene278	http://www.ncbi.nlm.nih.gov/gene/?term=azo0275
azo0276	azo0276		azo0276	303050	303640	+	Hypothetical protein	Putative Hypothetical protein. No Good homologous hits in the DB. No domains/features/signal peptide or motifs present.	gene	gene279	http://www.ncbi.nlm.nih.gov/gene/?term=azo0276
azo0277	azo0277		azo0277	303727	304134	+	Hypothetical protein	Hypothetical protein. Weak Homology. 39%25 identity to TrEMBL%3BQ8EWG7. No domains%2C repeats%2C motifs or features present.	gene	gene280	http://www.ncbi.nlm.nih.gov/gene/?term=azo0277
azo0278	azo0278		azo0278	304110	304865	-	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide. 1 TMHs	gene	gene281	http://www.ncbi.nlm.nih.gov/gene/?term=azo0278
azo0279	azo0279		azo0279	305070	305825	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to BB1132 of B.bronchiseptica of 42%25 (tremble:Q7WNA8). No domains predicted. No Signal peptide or TMH present.	gene	gene282	http://www.ncbi.nlm.nih.gov/gene/?term=azo0279
azo0280	azo0280		azo0280	305877	308081	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rs03062 of R. solanacearum of 48%25 (tremble:Q8XQ05) no domains predicted signal peptide 2 TMHs%3B~Conserved hypothetical protein	gene	gene283	http://www.ncbi.nlm.nih.gov/gene/?term=azo0280
azo0281	azo0281		azo0281	308084	308728	+	conserved hypothetical outer membrane protein	Outer membrane protein A precursor. Homology with hypothetical transmembrane protein and probable outer membrane protein of 56%25 as well as with motB (flagellar motor protein B) from amino acid 84 of 34%25. Pfam: OmpA no signal peptide probable 1 TMH%3B~Conserved hypothetical protein	gene	gene284	http://www.ncbi.nlm.nih.gov/gene/?term=azo0281
azo0282	azo0282		azo0282	308721	309476	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS03060 of R.solanacearum of 35%25 (tremble:Q8XQ03) No domains predicted. No signal peptide or TMH present.	gene	gene285	http://www.ncbi.nlm.nih.gov/gene/?term=azo0282
azo0283	azo0283		azo0283	309473	310132	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no TMHs. no signal peptide	gene	gene286	http://www.ncbi.nlm.nih.gov/gene/?term=azo0283
azo0284	azo0284		azo0284	310129	311193	-	putative Beta-ketoacyl synthase family protein	Pfam (PF02801): Beta-ketoacyl synthase%2C C-terminal domain. Pfam (PF00109): Beta-ketoacyl synthase%2C N-terminal domain.%3B~Function unclear	gene	gene287	http://www.ncbi.nlm.nih.gov/gene/?term=azo0284
azo0285	azo0285		azo0285	311190	311462	-	conserved hypothetical acyl carrier protein	Conserved hypothetical acyl carrier protein. Homology to psptO5093 of P. syringae of 44%25 (trembl|Q87V48). Interpro: Phosphopanteteine-binding (IPR00613). Pfam: Phosphopantetheine attachment site (PF00550) Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. Tigrfam: acyl_carrier: acyl carrier protein. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene288	http://www.ncbi.nlm.nih.gov/gene/?term=azo0285
azo0286	azo0286		azo0286	311480	312718	-	putative ABC transporter permease	Similar to TREMBL:Q7NFQ1 (27%25 identity)%3B TREMBL:Q97E48 (20%25 identity)%3B TREMBL:Q8FWI9 (21%25 identity). TMHMM predicting six transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear	gene	gene289	http://www.ncbi.nlm.nih.gov/gene/?term=azo0286
azo0287	azo0287		azo0287	312733	313155	-	conserved hypothetical protein	Probable DNA mismatch repair protein mutS. TREMBL:Q92SQ4:42%25 identity%2C 55%25 similarity. InterPro:IPR002716%3B PIN. Pfam: PF01850%3B PIN Absence of signal peptide Absence of transmembrane helices L17: ribosomal protein L17%3B~Function unclear	gene	gene290	http://www.ncbi.nlm.nih.gov/gene/?term=azo0287
azo0288	azo0288		azo0288	313152	313379	-	hypothetical protein	no significant homologies	gene	gene291	http://www.ncbi.nlm.nih.gov/gene/?term=azo0288
azo0289	azo0289		azo0289	313482	314405	-	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8R788 (35%25 identity)%3B TREMBL:Q81S77 (37%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership	gene	gene292	http://www.ncbi.nlm.nih.gov/gene/?term=azo0289
azo0290	azo0290		azo0290	314413	315417	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03001929 of Dechloromonas aromatica of 68%25 (gi|53730629|ref|ZP_00348881.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene293	http://www.ncbi.nlm.nih.gov/gene/?term=azo0290
azo0291	azo0291		azo0291	315418	315813	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03001928 of Dechloromonas aromatica of 59%25 (gi|41724574|ref|ZP_00151411.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene294	http://www.ncbi.nlm.nih.gov/gene/?term=azo0291
azo0292	azo0292	darB	darB	315826	316980	-	probable 3-oxoacyl-[acyl-carrier-protein] synthase	3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta- ketoacyl-ACP synthase III) (KAS III). Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and/or straight-chain of fatty acids (By similarity). Entry name trembl|Q84H29(SRS) Identities %3D 238/384 (61%25) Prediction: Non-secretory protein Signal peptide probability: 0.0 Number of predicted TMHs: 0 Pfam:- Beta-ketoacyl synthase%2C N-terminal do Accession number:-Pf00109%3B~High confidence in function and specificity	gene	gene295	http://www.ncbi.nlm.nih.gov/gene/?term=azo0292
azo0293	azo0293	darA	darA	316973	317914	-	probable dialkylrecorsinol condensing enzyme	Probable dialkylrecorsinol condensing enzyme. Homology to darA of P. aurantiaca of 56%25 (trembl|Q84H30(SRS)) no domains predicted no signal peptide 1 TMHs%3B~Family membership	gene	gene296	http://www.ncbi.nlm.nih.gov/gene/?term=azo0293
azo0294	azo0294		azo0294	317928	319742	-	putative penicillin-binding protein	INVOLVED IN CELL WALL BIOSYNTHESIS AND MAY ALSO ACT AS A SENSOR OF EXTERNAL PENICILLINS%2C TREMBL:Q7UMP8 (30%25 identity)%3B TREMBL:Q988N4 (27%25 identity).%3B~Family membership	gene	gene297	http://www.ncbi.nlm.nih.gov/gene/?term=azo0294
azo0295	azo0295		azo0295	320022	320456	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV2374 of C.violaceum of 31%25 (tremble:Q7NVG9). No domains predicted. No signal peptide or TMH present.	gene	gene298	http://www.ncbi.nlm.nih.gov/gene/?term=azo0295
azo0296	azo0296		azo0296	320512	321492	-	probable metallo-beta-lactamase superfamily protein	InterPro:IPR001279- Metallo-beta-lactamase superfamily%2Cglyoxalase II family%2C that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid. TREMBL:Q7WEK1-55%25 Identity. Pfam-Presence of phosphoribosyltransferase%2C tissue factor%2C and GMP reductaseC like domains Signal P predicting signal peptide and TMHMM predicting transmembrane helices. ccoP: cytochrome c oxidase cbb3-type s%3B~High confidence in function and specificity	gene	gene299	http://www.ncbi.nlm.nih.gov/gene/?term=azo0296
azo0297	azo0297		azo0297	321614	321958	-	conserved hypothetical protein	Conserved hypothetical protein%2C 66%25 similarity to TrEMBL%3B Q6NA86. Signal peptide present. No TMH reported present.	gene	gene300	http://www.ncbi.nlm.nih.gov/gene/?term=azo0297
azo0298	azo0298	paaY	paaY	321964	322572	-	probable phenyl acetic acid degradation protein	pathway:carnitine metabolism (conversion of carnitine to gamma-butyrobetaine). TREMBL:Q9F9V3: 71%25 identity%2C 83%25 similarity similarity:belongs to the transferase hexapeptide repeat family Carnitine operon protein caiE. InterPro:IPR001451%3B Hexapep_transf. Pfam:PF00132%3B Hexapep InterPro: Bacterial transferase hexapeptide repeat TIGR00094: conserved hypothetical protein%3B~High confidence in function and specificity	gene	gene301	http://www.ncbi.nlm.nih.gov/gene/?term=azo0298
azo0299	azo0299	paaZ	paaZ	322766	324430	-	conserved hypothetical dehydrogenase	Conserved hypothetical dehydrogenase. Homology to paaZ of A. evansii of 83%25 (trembl|Q9F9V2). Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~Family membership	gene	gene302	http://www.ncbi.nlm.nih.gov/gene/?term=azo0299
azo0300	azo0300	paaG1	paaG1	324719	325522	+	probable enoyl-CoA hydratase	Probable enoyl-CoA hydratase. Homology to paaG of E. coli of 60%25 (sprot|PAAG_ECOLI(SRS) COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). Activity:- (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O. Interpro: Enoyl-CoA hydratase/isomerase (IPR001753) Pfam: Enoyl-CoA hydratase/isomerase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene303	http://www.ncbi.nlm.nih.gov/gene/?term=azo0300
azo0301	azo0301	paaH1	paaH1	325526	327073	+	probable 3-hydroxybutyryl-CoA dehydrogenase	Activity:-3-acetoacetyl-CoA + NADPH %3D (S)-3-hydroxybutanoyl-CoA + NADP+ Entry name TREMBL:Q9F9V1 InterPro IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. IPR008927%3B 6DGDH_C_like. IPR002110%3B ANK. IPR000205%3B NAD_BS. Pfam PF00725%3B 3HCDH%3B 2. PF02737%3B 3HCDH_N%3B 1. Identities %3D 344/510 (67%25) Prediction: Signal peptide Signal peptide probability: 0.660 Number of predicted TMHs: 1%3B~High confidence in function and specificity	gene	gene304	http://www.ncbi.nlm.nih.gov/gene/?term=azo0301
azo0302	azo0302	paaI	paaI	327066	327536	+	phenylacetic acid degradation protein PaaI	Phenylacetic acid aerobic catabolism. Similar to TREMBL:Q9F9V0 (74%25 identity)%3B SWISSPROT:P76084 (48%25 identity). InterPro (IPR003736): Phenylacetic acid degradation-related protein. Pfam (DUF157): Uncharacterized protein PaaI%2C COG2050%3B~High confidence in function and specificity	gene	gene305	http://www.ncbi.nlm.nih.gov/gene/?term=azo0302
azo0303	azo0303	paaK	paaK	327612	328934	+	Phenylacetate--CoA ligase.	Phenylacetate-coenzyme A ligase (EC 6.2.1.30) (Phenylacetyl-CoA ligase) (PA-CoA ligase). catalyzes the activation of phenylacetic acid to phenylacetyl-coA%3B~High confidence in function and specificity	gene	gene306	http://www.ncbi.nlm.nih.gov/gene/?term=azo0303
azo0304	azo0304	paaA	paaA	328992	329987	+	phenylacetic acid degradation protein [paaA]	Phenylacetic acid degradation protein [paaA]%2C86%25 identity(91%25 similarity) to TrEMBL%3BQ9F9U9. 72%25 identity to TrEMBL%3BQ7WGX6%2C Q8XS77 Has PF05138%2C Phenylacetic acid catabolic protein%3BIPR007814%2C PaaA_PaaC%3B This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex. No Signal Peptide or TMH present.%3B~High confidence in function and specificity	gene	gene307	http://www.ncbi.nlm.nih.gov/gene/?term=azo0304
azo0305	azo0305	paaB	paaB	330089	330376	+	phenylacetic acid degradation protein PaaB	May be part of a multicomponent oxygenase involved in phenylacetyl-coa hydroxylation. Phenylacetic acid aerobic catabolism pathway%2C TREMBL:Q8XS76 (75%25 identity)%3B SWISSPROT:P76078 (61%25 identity).%3B~High confidence in function and specificity	gene	gene308	http://www.ncbi.nlm.nih.gov/gene/?term=azo0305
azo0306	azo0306	paaC	paaC	330388	331158	+	probable phenylacetic acid degradation protein PaaC	Probable phenylacetic acid degradation protein PaaC. Homology to paaI of P. putida of 46%25 (trembl|O84983). Part of a catabolic pathway of phenylacetic acid. These proteins forms part of a dioxygenase complex. Interpro: Phenylacetic acid catabolic (IPR007814) Pfam: Phenylacetic acid catabolic protein (PF05138) no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene309	http://www.ncbi.nlm.nih.gov/gene/?term=azo0306
azo0307	azo0307	paaD	paaD	331218	331709	+	probable phenylacetic acid degradation protein PaaD	Probable pheylacetic acid degradation protein PaaD. Homology to phaH of P. putida of 54%25 (trembl|Q88HS8) Interpro: Protein of unknown function DUF59 (IPR002744) Pfam: Domain of unknoen function DUF59 (PF01883). Domain of unknown function DUF59%3BIPR002744%3B This family includes prokaryotic proteins of unknown function. The family also includes PhaH O84984 from Pseudomonas putida. PhaH forms a complex with PhaF O84982%2C PhaG O84983 and PhaI O84985%2Cwhich hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. So members of this family may all be components of ring hydroxylating complexes. no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene310	http://www.ncbi.nlm.nih.gov/gene/?term=azo0307
azo0308	azo0308	paaE	paaE	331742	332809	+	probable phenylacetic acid degradation NADH oxidoreductase PaaE	Probable phenylacetic acid degradation NADH oxidoreductase paaE. Homology to paaE of E. coli of 50%25 (sprot|PAAE_ECOLI). Probable PART OF A MULTICOMPONENT OXYGENASE involved in aerobic degradation of phenylacetic acid. InterPro: Oxidoreductase FAD and NAD(P)-binding domain(IPR001433)%3B 2Fe-2S Ferredoxin (IPR006057)%3B Ferredoxin (IPR001041)%3B NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidoreductase FAD-binding domain%3B Oxidoreductase NAD-binding domain%3B 2Fe-2S iorn-sulfur cluster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene311	http://www.ncbi.nlm.nih.gov/gene/?term=azo0308
azo0309	azo0309	paaR	paaR	332869	333513	+	putative TetR family transcriptional regulator	Putative TetR family transcriptional regulator%2C%3B~Family membership	gene	gene312	http://www.ncbi.nlm.nih.gov/gene/?term=azo0309
azo0310	azo0310	paaJ1	paaJ1	333560	334762	+	probable beta-ketoadipyl CoA thiolase	THIOLYTIC CLEAVAGE OF BETA-KETOADIPYL-COA TO SUCCINATE AND ACETYL-COA. Entry name:- TREMBL:Q84HH5 InterPro:- IPR002155%3B Thiolase. Pfam:- PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Identities %3D 298/398 (74%25) Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene313	http://www.ncbi.nlm.nih.gov/gene/?term=azo0310
azo0311	azo0311		azo0311	334888	336033	+	probable ABC transporter substrate binding protein	ABC transporter substrate binding proteins count to the family of extracellular ligand binding proteins. It is a component of the high affinity amino acid transport system. Similar to trembl|Q8XU64 (71%25) and to sprot|LIVJ_ECOLI (16%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene314	http://www.ncbi.nlm.nih.gov/gene/?term=azo0311
azo0312	azo0312		azo0312	336157	337194	+	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q7W5E8 (62%25)%2C to sprot|BRAD_PSEAE (25%25) and to sprot|LIVH_ECOLI (26%25). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting nine Tmhelix.%3B~Specificity unclear	gene	gene315	http://www.ncbi.nlm.nih.gov/gene/?term=azo0312
azo0313	azo0313		azo0313	337260	339053	+	ABC transporter ATP-binding/permease protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. The integral inner-membrane proteins translocate the substrate across the membrane. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX5 (54%25) and to trembl|Q8UFI6 (47%25). Pfam: ABC transporter Pfam (PF02653): Branched-chain amino acid transport system / permease component Smart : AAA ATPase SignalP reporting Signal peptide. TMHMM reporting nine Tmhelix.%3B~Specificity unclear	gene	gene316	http://www.ncbi.nlm.nih.gov/gene/?term=azo0313
azo0314	azo0314		azo0314	339053	339814	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX4 (68%25) and to trembl|Q7WCY5 (63%25). Smart: AAA ATPases%3B~Specificity unclear	gene	gene317	http://www.ncbi.nlm.nih.gov/gene/?term=azo0314
azo0315	azo0315	hupB	hupB	340402	340677	+	DNA-binding protein HU (DNA-binding protein II)	DNA-binding protein HU (DNA-binding protein II) (HB). Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it and thus to prevent its denaturation under extreme environmental conditions. InterPro: Bacterial histone-like DNA-binding protein%3B~High confidence in function and specificity	gene	gene318	http://www.ncbi.nlm.nih.gov/gene/?term=azo0315
azo0316	azo0316	rhlE1	rhlE1	341121	342464	+	putative ATP-dependent RNA helicase	ATP-dependent RNA helicase%3B~Family membership	gene	gene319	http://www.ncbi.nlm.nih.gov/gene/?term=azo0316
azo0317	azo0317	nusB	nusB	342549	343016	-	putative N utilization substance protein B	NusB protein (N utilization substance protein B homolog) Involved in the transcription termination process (By similarity).Belongs to the nusB family 46%25 1 TIGR01951 nusB%3B 1%3B~High confidence in function and specificity	gene	gene320	http://www.ncbi.nlm.nih.gov/gene/?term=azo0317
azo0318	azo0318	ribH	ribH	343013	343483	-	riboflavin synthase	67-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) (DMRL synthase) (Lumazine synthase) (Riboflavin synthase beta chain). Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1-D)- ribityl-amino-24(1H3H)-pyrimidinedione and L-34-dihydrohy-2- butanone-4-phosphate via 67-dimethyl-8-lumazine. The beta subunit catalyzes the condensation of 5-amino-6-(1-D)-ribityl-amino-24(1H3H)-pyrimidinedione with L-34-dihydrohy-2-butanone-4-phosphate yielding 67-dimethyl-8-lumazine (By similarity). ribH: riboflavin synthase beta subunit%3B~High confidence in function and specificity	gene	gene321	http://www.ncbi.nlm.nih.gov/gene/?term=azo0318
azo0319	azo0319	ribAB	ribAB	343535	344626	-	GTP cyclohydrolase II	RibAB%3B riboflavin biosynthesis bifunctional protein: GTP cyclohydrolase II and 3%2C4-dihydroxy-2-butanone-4-phosphate synthase InterPro: 3%2C4-Dihydroxy-2-butanone 4-phosphate synthase ribB: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%3B~High confidence in function and specificity	gene	gene322	http://www.ncbi.nlm.nih.gov/gene/?term=azo0319
azo0320	azo0320	ribE	ribE	344623	345237	-	riboflavin synthase	Riboflavin synthase alpha chain (EC 2.5.1.9). Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1-D)- ribityl-amino-24(1H3H)-pyrimidinedione and L-34-dihydrohy-2- butanone-4-phosphate via 67-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 67-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1-D)-ribityl-amino-24(1H3H)- pyrimidinedione. ribE: riboflavin synthase alpha subunit%3B~High confidence in function and specificity	gene	gene323	http://www.ncbi.nlm.nih.gov/gene/?term=azo0320
azo0321	azo0321	cutA2	cutA2	345296	347116	-	putative protein disulfide-isomerase	Putative Protein disulfide-isomerase (EC 5.3.4.1). Homology to dsbD of E. coli of 37%25 (sprot|DSBD_ECOLI). Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps (By similarity). Pfam: Cytochrom C biogenesis protein transporter signal peptide probable 8 TMHs%3B~Family membership	gene	gene324	http://www.ncbi.nlm.nih.gov/gene/?term=azo0321
azo0322	azo0322	cutA1	cutA1	347169	347492	-	periplasmic divalent cation tolerance protein	Periplasmic divalent cation tolerance protein .36%25 similarity to E.coli CutA1 protein involved in copper tolerance. InterPro:IPR004323%3B CutA1. Pfam:PF03091%3B CutA1%3B 1.%3B~High confidence in function and specificity	gene	gene325	http://www.ncbi.nlm.nih.gov/gene/?term=azo0322
azo0323	azo0323	naoA	naoA	347536	348780	-	2-nitropropane dioxygenase.	TREMBL:Q7MBF3: 80%25 identity%2C 89%25 similarity InterPro:IPR004136%3B 2nprop_dioxygen. IPR003009%3B FMN_enzyme. Pfam: PF03060%3B NPD tim: triosephosphate isomerase Non-secretory protein with no signal peptide. TMHMM predicted no transmembrane helices.%3B~High confidence in function and specificity	gene	gene326	http://www.ncbi.nlm.nih.gov/gene/?term=azo0323
azo0324	azo0324		azo0324	348990	349301	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to GSU0176 of G.sulfurreducens of 42%25 (tremble:Q74GR9) No domains predicted. No signal peptide or TMH reported present.	gene	gene327	http://www.ncbi.nlm.nih.gov/gene/?term=azo0324
azo0325	azo0325		azo0325	349421	350749	+	putative flavocytochrome protein	Putative flavocytochrome protein. 48%25 FAD_binding_6.IPR001433%3B Oxred_FAD/NAD(P). Pfam:PF00970%3B FAD_binding_6%3B 1.PF00175%3B NAD_binding_1%3B 1. TMhelix: 6. Siganl peptide: present.%3B~Function unclear	gene	gene328	http://www.ncbi.nlm.nih.gov/gene/?term=azo0325
azo0326	azo0326		azo0326	350997	351800	+	conserved hypothetical protein	conserved hypothetical protein. Homology to cv0811 of C. violaceum of 43%25 (trembl|Q7NPT0(SRS) no domains predicted no signal peptide no TMHs	gene	gene329	http://www.ncbi.nlm.nih.gov/gene/?term=azo0326
azo0327	azo0327		azo0327	351835	352428	-	putative TetR family transcriptional regulator	Putative TetR family transcriptional regulator%2C%3B~Conserved hypothetical protein	gene	gene330	http://www.ncbi.nlm.nih.gov/gene/?term=azo0327
azo0328	azo0328	livK1	livK1	352603	353745	+	putative leucine-specific binding protein	In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to sprot|LIVK_SALTY (23%25) and to trembl|Q8XUX2 (46%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene331	http://www.ncbi.nlm.nih.gov/gene/?term=azo0328
azo0329	azo0329		azo0329	353800	354273	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to SCO5300 of Streptomyces coelicolor of 46%25 (tremble:Q9XAE9). No domains predicted. No TMHs. No signal peptide.	gene	gene332	http://www.ncbi.nlm.nih.gov/gene/?term=azo0329
azo0330	azo0330	blaA	blaA	354344	355339	-	probable transcriptional regulator%2C LysR family	HTH-type transcriptional regulator blaA (Beta-lactamase regulatory protein blaA). Positive regulator of the expression of the gene (blab) for beta-lactamase. Similar to SWISSPROT: sprot|BLAA_PROVU (32%25 Proteus vulgaris%2C HTH-type transcriptional regulator BlaA) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene333	http://www.ncbi.nlm.nih.gov/gene/?term=azo0330
azo0331	azo0331		azo0331	355556	356023	+	conserved hypothetical protein	Conserved hypothetical protein%2C 41%25 similarity to TrEMBL%3BQ88JC7. Has IPR005544 DUF_HHE:PF03794%3BDomain of Unknown function:This domain normally occurs as tandem repeats and is found in bacteria%2C yeast and plants. It contains two fully conserved histidines and one glutamate residue. Members of the family include DnrN%2C NorA and ScdA%2C which have been implicated in NO response and cell wall physiology. Has no Signal peptide or TMH reported present.	gene	gene334	http://www.ncbi.nlm.nih.gov/gene/?term=azo0331
azo0332	azo0332		azo0332	356048	357376	-	putative esterase	Hypothetical protein yqhO. This family consists of various patatin glycoproteins from the total soluble protein in potato tubers.Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase%2C catalysing the cleavage of fatty acids from membrane lipids SPROT:P54513: 23%25 identity%2C 33%25 similarity SubtiList: BG11703%3B yqhO. InterPro:IPR002641%3B Patatin. Pfam:PF01734%3B Patatin No signal peptide TMHMM predicted 2 transmembrane helices mobB: molybdopterin-guanine dinucleot%3B~Family membership	gene	gene335	http://www.ncbi.nlm.nih.gov/gene/?term=azo0332
azo0333	azo0333		azo0333	357462	358568	+	putative esterase	Hypothetical protein Rv1063c/MT1093/Mb1092c. TREMBL:Q89EP5: 29%25 identity%2C 42%25 similarity InterPro:IPR002641%3B Patatin. Pfam:PF01734%3B Patatin 2A0108: nitrate transporter Absence of signal peptide No. of TMH's: 2 (TMHMM predicted).%3B~Family membership	gene	gene336	http://www.ncbi.nlm.nih.gov/gene/?term=azo0333
azo0334	azo0334		azo0334	358579	359157	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to BPP2140 of Bordetella parapertussis 0f 44%25 (trembl|Q7W8J3(SRS)) No domains predicted. Signal peptide present. No TMH present. 6PTHBS: 6-pyruvoyl tetrahydrobiopterin%3B~Conserved hypothetical protein	gene	gene337	http://www.ncbi.nlm.nih.gov/gene/?term=azo0334
azo0335	azo0335		azo0335	359461	360240	+	EAL-domain containing protein	EAL-domain containing protein%2C ):This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function [1]. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.%3B~Conserved hypothetical protein	gene	gene338	http://www.ncbi.nlm.nih.gov/gene/?term=azo0335
azo0336	azo0336		azo0336	360237	361499	+	PAS/PAC/GGDEF-domain containing protein	PAS/PAC/GGDEF-domain containing protein%2C suggesting involvement into signalling processes. Similarity to SWISSPROT: sprot|YDAM_ECOLI (24%25 Escherichia coli%2C hyp. protein) / TREMBL: trembl|Q887F0 (59%25 Pseudomonas syringae%2C hyp. protein) Pfam: PF00990 GGDEF domain. This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. The function of this domain is unknown%2C however it has been shown to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins%2C namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum%2C both of which regulate the turnover of cyclic diguanosine monophosphate. TIGRFAM:TIGR00254 putative diguanylate cyclase (GGDEF) domain. TIGR00229 PAS domain S-box.%3B~Conserved hypothetical protein	gene	gene339	http://www.ncbi.nlm.nih.gov/gene/?term=azo0336
azo0337	azo0337		azo0337	361535	362107	-	Hypothetical protein	Probable hypothetical Protein. Extremely weak homology with hits in the PDB. No Motif/Features/TMH/ or Signal peptide present.	gene	gene340	http://www.ncbi.nlm.nih.gov/gene/?term=azo0337
azo0338	azo0338	pstS1	pstS1	362400	363443	+	putative phosphate-binding periplasmic protein	38%25 Peri-phosph.IPR006059%3B SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. TIGRFAMs:TIGR00975%3B 3a0107s03%3B 1. Signal peptide present.%3B~High confidence in function and specificity	gene	gene341	http://www.ncbi.nlm.nih.gov/gene/?term=azo0338
azo0339	azo0339		azo0339	363495	363989	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to an orf of Acinetobacter sp. (strain ADP1) of 43%25 (tremble:Q6F6W4). no domains predicted. signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene342	http://www.ncbi.nlm.nih.gov/gene/?term=azo0339
azo0340	azo0340		azo0340	364232	364546	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. No homology to the data bank No domains predicted No signal peptide 2 TMHs	gene	gene343	http://www.ncbi.nlm.nih.gov/gene/?term=azo0340
azo0341	azo0341		azo0341	364615	365061	+	putative cytochrome c'	Putative cytochrome c'. Homology to cytochrome c of R. gelatineosus (sprot|CYCP_RHOGE). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. InterPro: Cytochrome c class II (IPR002321) Pfam: Cytochrome C probable signal peptide no TMHs%3B~Function unclear	gene	gene344	http://www.ncbi.nlm.nih.gov/gene/?term=azo0341
azo0342	azo0342	nhoA	nhoA	365077	365901	-	N-hydroxyarylamine O-acetyltransferase	Belongs to the arylamine n-acetyltransferase family. Arylamine N-acetyltransferase is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine%2C N-hydroxyarylamines and hydrazines. Similar to TREMBL:Q98D42 (47%25 identity)%3B TREMBL:Q8FHI6 (39%25 identity)%3B SWISSPROT:P77567 (39%25 identity). InterPro (IPR001447): N-acetyltransferase Pfam (PF00797): N-acetyltransferase.%3B~High confidence in function and specificity	gene	gene345	http://www.ncbi.nlm.nih.gov/gene/?term=azo0342
azo0343	azo0343	parA2	parA2	366042	366704	+	probable ParA family protein	Sporulation initiation inhibitor protein soj. INHIBITS THE INITIATION OF SPORULATION SPO0J ANTAGONIZES THIS INHIBITION. SOJ ULTIMATELY INHIBITS THE ACTIVATION (PHOSPHORYLATION) OF SPO0A. IT IS NOT REQUIRED FOR CHROMOSOME PARTITIONING. InterPro: ParA family ATPase%3B~Function unclear	gene	gene346	http://www.ncbi.nlm.nih.gov/gene/?term=azo0343
azo0344	azo0344		azo0344	366705	367574	+	Hypothetical protein	Probable Hypothetical Protein. No domains%2Cfeatures%2Cmotifs%2C or signal peptide present.	gene	gene347	http://www.ncbi.nlm.nih.gov/gene/?term=azo0344
azo0345	azo0345		azo0345	367763	369865	-	ATP-dependent DNA helicase	ATP-dependent DNA helicase pcrA (EC 3.6.1.-). InterPro: UvrD/REP helicase%3B~Specificity unclear	gene	gene348	http://www.ncbi.nlm.nih.gov/gene/?term=azo0345
azo0346	azo0346		azo0346	369965	371605	+	putative Na+/H+ antiporter	42%25 Na_H_porter.IPR004705%3B NaHantiport_bac.Bacterial Na+/H+ antiporter Pfam:PF00999%3B Na_H_Exchanger%3B 1. TIGRFAMs:TIGR00831%3B a_cpa1%3B 1. Signal peptide present TMHelix: 12%3B~High confidence in function and specificity	gene	gene349	http://www.ncbi.nlm.nih.gov/gene/?term=azo0346
azo0347	azo0347		azo0347	371653	372096	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal P reporting Signal Peptide present. No TMH reported Present.	gene	gene350	http://www.ncbi.nlm.nih.gov/gene/?term=azo0347
azo0348	azo0348		azo0348	372236	373684	+	4-hydroxybenzoate octaprenyltransferase	Prenyltransferase family protein. InterPro: UbiA prenyltransferase%3B~Specificity unclear	gene	gene351	http://www.ncbi.nlm.nih.gov/gene/?term=azo0348
azo0349	azo0349		azo0349	373681	374046	+	putative Small Multi-Drug resistant family protein	Putative Small Multi-Drug resistant(SMR)family protein%2C 30%25 identical to TrEMBL%3BQ8XZS2. Has PF00893%2CSmall Multidrug Resistance protein%3BIPR000390%2C Smr:This family is the Small Multidrug Resistance (SMR) family. Several members have been shown to export a range of toxins%2C including ethidium bromide and quaternary ammonium compounds%2C through coupling with proton influx.	gene	gene352	http://www.ncbi.nlm.nih.gov/gene/?term=azo0349
azo0350	azo0350		azo0350	374102	375397	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to gll2146 of G. violaceus of 44%25 (trembl|Q7NIN7(SRS)) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene353	http://www.ncbi.nlm.nih.gov/gene/?term=azo0350
azo0351	azo0351	nodJ	nodJ	375522	376307	-	ABC transporter permease NodJ	Forms with NodI a membrane transport complex involved in the nodulation process. it probably exports a modified beta-1%2C4-linked n-acetylglucosamine oligosaccharide. Belongs to the ABC-2 integral membrane protein family%2C TREMBL:Q7WHD1 (49%25 identity)%3B SWISSPROT:O52619 (49%25 identity). InterPro (IPR000412): ABC transporter%2C family 2. Pfam (PF01061): ABC-2 type transporter. TMHMM reporting six transmembrane helices. TC (3.A.1.102): The Lipooligosaccharide Exporter (LOSE) Family.%3B~High confidence in function and specificity	gene	gene354	http://www.ncbi.nlm.nih.gov/gene/?term=azo0351
azo0352	azo0352		azo0352	376345	376629	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to mvpT of E. carotovora of 44%25 (trembl:Q6D393) No domains predicted. No TMHs No signal peptide	gene	gene355	http://www.ncbi.nlm.nih.gov/gene/?term=azo0352
azo0353	azo0353		azo0353	376663	376758	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No signal peptide No TMHs	gene	gene356	http://www.ncbi.nlm.nih.gov/gene/?term=azo0353
azo0354	azo0354		azo0354	377176	378156	+	putative methylase	Region start changed from 377491 to 377176 (315 bases)	gene	gene357	http://www.ncbi.nlm.nih.gov/gene/?term=azo0354
azo0355	azo0355		azo0355	378157	379323	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to lpg1234 of L.pneumophila of 42%25 (gnl|keqq|lpn:lpg1234(KEGG)). Has PF04471%2C Restriction endonuclease%3BIPR007560%2C Mrr_cat%3B Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA. No TMHs. No signal peptide.	gene	gene358	http://www.ncbi.nlm.nih.gov/gene/?term=azo0355
azo0356	azo0356	vsr	vsr	379320	379709	-	putative hypothetical very short patch repair endonuclease	Putative hypothetical very short patch repair endonuclease. Homology to vrs of E. coli of 29%25 (sprot|VSR_ECOLI) All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. Interpro: DNA mismatch endonuclease vsr (IPR004603) Pfam: DNA mismatch endonuclease Vsr Tigrfam: vsr: DNA mismatch endonuclease no signal peptide no TMHs%3B~Family membership	gene	gene359	http://www.ncbi.nlm.nih.gov/gene/?term=azo0356
azo0357	azo0357		azo0357	379781	380920	-	hypothetical protein		gene	gene360	http://www.ncbi.nlm.nih.gov/gene/?term=azo0357
azo0358	azo0358		azo0358	380934	383189	-	putative two-component sensor kinase	Region start changed from 382943 to 383189 (246 bases)	gene	gene361	http://www.ncbi.nlm.nih.gov/gene/?term=azo0358
azo0359	azo0359		azo0359	383349	384059	-	conserved hypothetical membrane protein.	Conserved hypothetical membrane protein. Homology to MS2110 of M.succiniciproducens of 40%25 (gi|52426165|ref|YP_089302.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 1 TMHs%3B~Family membership	gene	gene362	http://www.ncbi.nlm.nih.gov/gene/?term=azo0359
azo0360	azo0360	nodI	nodI	384192	385178	-	ABC transporter ATP-binding protein NodI	Nod factor export ATP-binding protein. Part of the ABC transporter complex nodIJ (TC 3.A.1.102.1) involved in the export of LCO (lipo-chitin oligosaccharide) and a modified beta-14-linked N- acetylglucosamine oligosaccharide. Responsible for energy coupling to the transport system%2C TREMBL:Q7W9D3 (58%25 identity)%3B SWISSPROT:O52618 (53%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. Pfam (PF00005): ABC transporter. TC (3.A.1.102) The Lipooligosaccharide Exporter (LOSE) Family.%3B~High confidence in function and specificity	gene	gene363	http://www.ncbi.nlm.nih.gov/gene/?term=azo0360
azo0361	azo0361		azo0361	385249	385866	-	conserved hypothetical glutathione S-transferase	Conserved hypothetical glutathione S-transferase protein. Homology to cv3306 of C. violaceum of 50%25 (trembl|Q7NSW3). Conjugation of reduced glutathione to a variety of targets. Pfam: Glutathione S-transferase%2C N-terminal domain%3B Glutathione S-transferase%2C C-terminal domain. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene364	http://www.ncbi.nlm.nih.gov/gene/?term=azo0361
azo0362	azo0362		azo0362	385891	386562	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc0328 of R. solanacearum of 59%25 (trembl|Q8Y2K7). Pfam: Prolyl oligopeptidas family no signal peptide no TMHs	gene	gene365	http://www.ncbi.nlm.nih.gov/gene/?term=azo0362
azo0363	azo0363	fer21	fer21	386572	386892	-	putative ferredoxin 2Fe-2S protein	Putative ferredoxin 2fe-2s protein. Homology to fer2 of C. pasteruianum of 35%25 (sprot|FER2_CLOPA). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. no signal peptide no TMHs%3B~Family membership	gene	gene366	http://www.ncbi.nlm.nih.gov/gene/?term=azo0363
azo0364	azo0364		azo0364	386915	388000	-	conserved hypothetical membrane protein	Conserved hypothtical membrane protein. Homology to rc03284 of R. solanacearum of 35%25 (trembl|Q8Y2L8(SRS) Has a weak hit to PF04892(IPR006976%3BvanZ)in Smart:This family contains several examples of the VanZ protein%2C but also contains examples of phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors%2C accumulated in the presence of ramoplanin%2Cshowed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors . no signal peptide 10 TMHs%3B~Conserved hypothetical protein	gene	gene367	http://www.ncbi.nlm.nih.gov/gene/?term=azo0364
azo0365	azo0365		azo0365	388715	389227	+	Conserved Hypothetical protein	Conserved Hypothetical protein%2C Q82Y48%2CRhodanese type protein. Has SMART SM00450 Rhodanese Homology Domain(RHOD)starting at position 47-153aa%3BRhodanese%2C a sulfurtransferase involved in cyanide detoxification (see IPR001307) shares evolutionary relationship with a large family of proteins. No Signal peptide or TMH reported Present.%3B~Family membership	gene	gene368	http://www.ncbi.nlm.nih.gov/gene/?term=azo0365
azo0366	azo0366	srpH	srpH	389292	390254	+	probable serine O-acetyltransferase	Probable serine O-acetyltransferase plasmid (EC 2.3.1.30) (SAT). Homology to srpH of Synechococcus of 55%25 (sprot|SRPH_SYNP7) no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene369	http://www.ncbi.nlm.nih.gov/gene/?term=azo0366
azo0367	azo0367		azo0367	390251	390484	+	SgrAlc control protein	SgrAlc control protein%2C%3B~High confidence in function and specificity	gene	gene370	http://www.ncbi.nlm.nih.gov/gene/?term=azo0367
azo0368	azo0368	mmpI	mmpI	390602	391528	+	probable immunodominant 35kDa protein	Probable immunodominant 35 kDa protein. Homology to mmpI of Mycobacterium avium of 69%25 (gi|2498566|sp|Q48899|MMP1_MYCAV(SwissProt (ExPASy)). No domains predicted. No signal peptide. No TMHs.%2C%3B~High confidence in function and specificity	gene	gene371	http://www.ncbi.nlm.nih.gov/gene/?term=azo0368
azo0369	azo0369	csdB	csdB	391503	393335	+	probable cysteine desulphurase	Cysteine desulphurases required for the mobilization of sulphur from cysteine. They are present in all organisms%2C where they are involved in iron-sulphur (Fe-S) cluster biosynthesis. Similar to sprot|CSD1_MYCLE (54%25)%2C to trembl|Q82WT8 (55%25) and to tremblnew|BAB21542 (34%25). Pfam (PF00266): Aminotransferase class-V Pfam (PF01041): DegT/DnrJ/EryC1/StrS aminotransferase family%3B~Function unclear	gene	gene372	http://www.ncbi.nlm.nih.gov/gene/?term=azo0369
azo0370	azo0370		azo0370	393595	394170	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE2493 of Nitrosomonas europaea of 67%25 (trembl|Q82S65(SRS)). Has PF01169%2C Uncharacterized protein family UPF0016%3BIPR001727%3B This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. No signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene373	http://www.ncbi.nlm.nih.gov/gene/?term=azo0370
azo0371	azo0371		azo0371	394317	395381	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene374	http://www.ncbi.nlm.nih.gov/gene/?term=azo0371
azo0372	azo0372		azo0372	395413	395931	-	conserved hypothetical protein	Entry name SWISSPROT:YHBT_ECOLI Prim. accession # P45474 InterPro IPR003033%3B SCP2. Pfam PF02036%3B SCP2%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.001 Number of predicted TMHs: 0 Identities %3D 46/107 (42%25)	gene	gene375	http://www.ncbi.nlm.nih.gov/gene/?term=azo0372
azo0373	azo0373		azo0373	395946	396842	-	conserved hypothetical peptidase	Conserved hypothetical peptidase. Homology to Rsp0969 of R. solanacearum of 51%25 (trembl|Q8XR90). Pfam: Peptidas family U32 no signal peptide no TMHs%3B~Family membership	gene	gene376	http://www.ncbi.nlm.nih.gov/gene/?term=azo0373
azo0374	azo0374		azo0374	396857	397870	-	conserved hypothetical peptidase	Conserved hypothetical peptidase. Homology to cv4084 of C. violaceum of 64%25 (trembl|Q7NQQ39. Pfam: Peptidas family U32 no signal peptide no TMHs%3B~Family membership	gene	gene377	http://www.ncbi.nlm.nih.gov/gene/?term=azo0374
azo0375	azo0375		azo0375	398061	399524	-	probABLE SODIUM/SOLUTE SYMPORTER TRANSMEMBRANE protein	TREMBL:Q8Y273: 59%25 identity%2C 72%25 similarity Osmoregulated proline transporter (Sodium/proline symporter). CATALYZES THE SODIUM-DEPENDENT UPTAKE OF EXTRACELLULAR PROLINE. InterPro: Sodium:solute symporter family InterPro:IPR001734%3B Na/solut_symport. Pfam:PF00474%3B SSF%3B TMHMM predicted transmembrane helices sss: SSS sodium solute transporter sup%3B~Function unclear	gene	gene378	http://www.ncbi.nlm.nih.gov/gene/?term=azo0375
azo0376	azo0376		azo0376	399721	401841	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA3609 of Azoarcus sp. EbN1 of 62%25 (gnl|keqq|eba:ebA3609(KEGG)). InterPro: Aminotransferase class-III (IPR005814)%2C Arginase family (IPR00594). Pfam: Aminotransferase class-III%2CArginase family. Tigrfam: argD: acetylornithine and succinylornithine aminotransferase%2C GABAtrnsam:4-aminobutyrate aminotransferase. no signal peptide. no TMHs	gene	gene379	http://www.ncbi.nlm.nih.gov/gene/?term=azo0376
azo0377	azo0377		azo0377	401938	403467	-	probable ubiquinone biosynthesis protein	Probable ubiquinone biosynthesis protein ubiB. Required probably indirectly for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol the fourth step in ubiquinone biosynthesis (By similarity). TREMBL:Q82TL7:65%25 identity InterPro:IPR004147%3B ABC1. IPR010232%3B UbiB. Pfam:PF03109%3B met_pdase_II: methionine aminopeptida%3B~High confidence in function and specificity	gene	gene380	http://www.ncbi.nlm.nih.gov/gene/?term=azo0377
azo0378	azo0378		azo0378	403712	405787	-	putative TonB-dependent receptor	Putative TonB-dependent receptor. Homology to bpp0186 ao B. parapertussis of 54%25 (trembl|Q7W206) The TonB protein interacts with outer membrane receptor proteins that carry out high-affinity binding and energy-dependent uptake of specific substrates into the periplasmic space. These substrates are either poorly permeable through the porin channels or are encountered at very low concentrations. In the absence of TonB these receptors bind their substrates but do not carry out active transport. Interpro: TonB-dependent receptor (IPR000531) Pfam: TonB-dependent receptor (PF00593) signal Peptide no TMHs%3B~Family membership	gene	gene381	http://www.ncbi.nlm.nih.gov/gene/?term=azo0378
azo0379	azo0379		azo0379	405969	406301	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide. No TMHs	gene	gene382	http://www.ncbi.nlm.nih.gov/gene/?term=azo0379
azo0380	azo0380	argS	argS	406538	408301	+	putative arginine-tRNA ligase	Putative arginine-tRNA ligase (EC 6.1.1.19). Homology to argS of E. coli of 25%25 (sprot:SYR_ECOLI) CATALYTIC ACTIVITY: ATP + L-arginine + tRNA(Arg) %3D AMP + diphosphate + L-arginyl-tRNA(Arg). InterPro: Arginyl-tRNA synthetase (IPR001278)%3B Aminoacyl-transfer RNA synthetase class-I (IPR001412) Tigrfam: argS: arginyl-tRNA synthetase Pfam: tRNA synthetases class I no signal peptide no TMHs%3B~Family membership	gene	gene383	http://www.ncbi.nlm.nih.gov/gene/?term=azo0380
azo0381	azo0381		azo0381	408318	408902	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to CV3999 of C.violaceum of 34%25 (trembl|Q7NQY6(SRS)). Pfam: Sporulation related repeat This 35 residue repeat is found in proteins involved in sporulation and cell division such as FtsN%2C DedD%2C and CwlM. This repeat might be involved in binding peptidoglycan (Bateman A pers obs). No TMHs. Signal peptide present%3B~Conserved hypothetical protein	gene	gene384	http://www.ncbi.nlm.nih.gov/gene/?term=azo0381
azo0382	azo0382	dsbA	dsbA	408982	409629	+	putative protein disulfide-isomerase	Putative protein disulfide-isomerase. Homology to dsbA of P. flourescens of 34%25. Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Tigrfam: redox_disulf_1: redox-active disulfid Pfam: DSBA Oxidoreductase signal peptide no TMHS%3B~Family membership	gene	gene385	http://www.ncbi.nlm.nih.gov/gene/?term=azo0382
azo0383	azo0383		azo0383	409658	410446	+	short chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8Y2Q1 (42%25 identity)%3B SWISSPROT:P25970 (34%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene386	http://www.ncbi.nlm.nih.gov/gene/?term=azo0383
azo0384	azo0384		azo0384	410530	410949	+	Hypothetical protein	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains%2Cfeatures%2Cmotifs present.	gene	gene387	http://www.ncbi.nlm.nih.gov/gene/?term=azo0384
azo0385	azo0385		azo0385	410991	412268	+	hypothetical membrane protein	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25%25 (trembl|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs	gene	gene388	http://www.ncbi.nlm.nih.gov/gene/?term=azo0385
azo0386	azo0386		azo0386	412265	413521	+	hypothetical membrane protein	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs	gene	gene389	http://www.ncbi.nlm.nih.gov/gene/?term=azo0386
azo0387	azo0387		azo0387	413530	414396	+	conserved hypothetical periplasmic binding protein	Conserved hypothetical periplasmic binding proten. Homology to rs03250 of R. solanacearum of 53%25 (trembl|Q8Y2Q2). Interpro: Periplasmic binding protein (IPR002491). Pfam: Periplasmic binding protein (PF01497). This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport. no signal peptide. no TMHs.%3B~Conserved hypothetical protein	gene	gene390	http://www.ncbi.nlm.nih.gov/gene/?term=azo0387
azo0388	azo0388		azo0388	414428	414877	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA3626 of Azoarcus sp. EbN1 of 59%25 (gnl|keqq|eba:ebA3626(KEGG)). InterPro: Protein of unknown function DUF132 InterPro:IPR002850%3B DUF132. IPR002716%3B PIN. IPR006596%3B PINc. Pfam:PF01850%3B PIN%3B SMART:SM00670%3B PINc%3B TIGRFAMs:TIGR00305%3B DUF132 TIGR00305: conserved hypothetical protein T. Non-secretory protein with very low signalpeptide probability (0.003) (Signal P predicted). Absence of transmembrane helices	gene	gene391	http://www.ncbi.nlm.nih.gov/gene/?term=azo0388
azo0389	azo0389	phbC1	phbC1	414946	416775	-	probable poly-beta-hydroxybutyrate synthase	Function:-Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation. Entry name TREMBL:Q8KXD5 Prim. accession # Q8KXD5 Identities %3D 354/607 (58%25) InterPro IPR000073%3B A/b_hydrolase. IPR010941%3B PhaC_N. Pfam PF00561%3B Abhydrolase_1%3B 1. PF07167%3B PhaC_N%3B 1. Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene392	http://www.ncbi.nlm.nih.gov/gene/?term=azo0389
azo0390	azo0390		azo0390	416816	417844	-	conserved hypothetical protein	conserved hypothetical protein. TREMBL:Q8Y2Q4-47%25 identity%2C 61%25 similarity. Pfam: Lactamase_B%2Caminotransferase III%2C AP2 domain. TMHMM predicted transmembrane helices.%3B~Specificity unclear	gene	gene393	http://www.ncbi.nlm.nih.gov/gene/?term=azo0390
azo0391	azo0391		azo0391	417987	418430	+	putative MerR-family transcriptional regulator	Putative MerR-family transcriptional regulator%2Ccopper efflux regulator / copper export regulator) InterPro: IPR000551 HTH_MerR. HTH reporting nucleic acid binding motif.%3B~Family membership	gene	gene394	http://www.ncbi.nlm.nih.gov/gene/?term=azo0391
azo0392	azo0392		azo0392	418560	419027	+	conserved hypothetical protein	Similar to TREMBL:Q8YBL0 (47%25 identity)%3B TREMBL:Q987R7 (50%25 identity)%3B TREMBL:Q7WA35 (55%25 identity). InterPro (IPR003736): Phenylacetic acid degradation-related protein. Pfam (DUF157): Uncharacterized protein PaaI%2C COG2050.%3B~Function unclear	gene	gene395	http://www.ncbi.nlm.nih.gov/gene/?term=azo0392
azo0393	azo0393	fadAx	fadAx	419104	420315	+	probable acyl-CoA thiolase	Probable acyl-CoA thiolase. Homology to fadAx of P. putida of 67%25 (gnl|keqq|ppu:PP2215(KEGG)). IPR002155%3B Thiolase. Pfam PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Two different types of thiolase are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (EC:2.3.1.9) and 3-ketoacyl-CoA thiolase (EC:2.3.1.16). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid -oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly -hydroxybutyrate synthesis or steroid biogenesis.Prediction: Non-secretory protein Signal peptide probability: 0.002 Number of predicted TMHs: 0%3B~Specificity unclear	gene	gene396	http://www.ncbi.nlm.nih.gov/gene/?term=azo0393
azo0394	azo0394	fadfX	fadfX	420508	421641	+	probable acyl-CoA dehydrogenase	Activity:- Catalysis of the reaction: acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor. Entry name TREMBL:Q9AHX9 Prim. accession # Q9AHX9 InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1. Identities %3D 244/375 (65%25) Number of predicted TMHs: 0%3B~Family membership	gene	gene397	http://www.ncbi.nlm.nih.gov/gene/?term=azo0394
azo0395	azo0395		azo0395	421777	422394	+	2-hydroxychromene-2-carboxylate isomerase family protein	Similar to TREMBL:Q8Y2R2 (42%25 identity)%3B TREMBL:Q7WEK4 (30%25 identity)%3B TREMBL:Q88IW7 (27%25 identity). Pfam (HCCA_isomerase): 2-hydroxychromene-2-carboxylate isomerase.%3B~Family membership	gene	gene398	http://www.ncbi.nlm.nih.gov/gene/?term=azo0395
azo0396	azo0396		azo0396	422445	422642	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to cc1308 of C. crescentus of 35%25 (trembl|Q9A8P5). Pfam:DUF1289 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. no signal peptide no TMHs	gene	gene399	http://www.ncbi.nlm.nih.gov/gene/?term=azo0396
azo0397	azo0397		azo0397	422639	422824	+	Hypothetical protein	Hypothetical protein%2C 54%25 identity to TrEMBl%3BQ8YGQ7. Has PF06945%2C Protein of unknown function (DUF1289)%3BIPR010710%3BThis family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown.	gene	gene400	http://www.ncbi.nlm.nih.gov/gene/?term=azo0397
azo0398	azo0398		azo0398	422821	423738	+	putative beta lactamase	Probable Hypothetical protein ycbL. TREMBL:Q8Y2S7-43%25 identity%2C57%25 similarity. TIGRFAM:2A0115-Benzoate transport proteins belong to this group. Benzyl alcohol%2Cbenzaldehyde%2C benzoate%2C and anthranilate are metabolized via catechol%2C cis%2Ccis-muconate%2C and the beta-ketoadipate pathway in some bacteria InterPro: Metallo-beta-lactamase superfamily Pfam:Metallo Beta lactamase superfamily%2C Phage lysozyme TMHMM predicted transmembrane heleces ftsZ: cell division protein FtsZ%3B~Function unclear	gene	gene401	http://www.ncbi.nlm.nih.gov/gene/?term=azo0398
azo0399	azo0399		azo0399	423811	424689	+	conserved hypothetical protein	Hypothetical UPF0042 protein YPO3586/Y0158. SWISPROT:Q82TN5: 6i%25 identity%2C 78%25 similarity This is a family of putative P-loop ATPases. Many of the proteins in this family are hypothetical and kinase activity has been proposed for some family members InterPro:IPR005337%3B UPF0042. Pfam: PF03668%3B ATP_bind_2 No Signal peptide (Signal P predicted) No transmembrane helices (TMHMM predicted) cmk: cytidylate kinase%3B~Function unclear	gene	gene402	http://www.ncbi.nlm.nih.gov/gene/?term=azo0399
azo0400	azo0400		azo0400	424686	425081	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to TP1032 of Treponema pallidum of 32%25 (sprot|YA32_TREPA(SRS)). Has PF07009(IPR010739):Protein of unknown function (DUF1312)%3BThis family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown. No singal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene403	http://www.ncbi.nlm.nih.gov/gene/?term=azo0400
azo0401	azo0401		azo0401	425062	425604	+	heptaprenyl diphosphate synthase component I	Heptaprenyl diphosphate synthase component I%2C 23%25 identity (45%25 similarity) to TrEMBL%3BQ896H9. Has PF07456%2CHeptaprenyl diphosphate synthase component I%3BIPR010898%2CHpre_diP_synt_I: This family contains component I of bacterial heptaprenyl diphosphate synthase (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme%2C both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.	gene	gene404	http://www.ncbi.nlm.nih.gov/gene/?term=azo0401
azo0402	azo0402	cheB1	cheB1	425612	426709	-	probable protein glutamate-methylesterase	Probable protein-glutamate methylesterase%2CCheB_methylest. IPR001789%3B Response_reg. IPR008248%3B RR_chemtxs_CheB. Pfam: PF01339%3B CheB_methylest. PF00072%3B response_reg. SMART: SM00448%3B REC. Chemotaxis response regulator protein-glutamate methylesterase (EC 3.1.1.61). Involved in the modulation of the chemotaxis system%3B catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by cheR (By similarity).%3B~High confidence in function and specificity	gene	gene405	http://www.ncbi.nlm.nih.gov/gene/?term=azo0402
azo0403	azo0403	cheR1	cheR1	426736	427560	-	probable chemotaxis protein methyltransferase	Probable chemotaxis protein methyltransferase%2CCheR_Metranf. IPR001601%3B Methyltransf. IPR000051%3B SAM_bind. Pfam: PF01739%3B CheR. PF03705%3B CheR_N. SMART: SM00138%3B MeTrc. Chemotaxis protein methyltransferase (EC 2.1.1.80). METHYLATION OF THE MEMBRANE-BOUND METHYL-ACCEPTING CHEMOTAXIS PROTEINS (MCP) TO FORM GAMMA-GLUTAMYL METHYL ESTER RESIDUES IN MCP.Annotation derived from meta auto annotator.%3B~High confidence in function and specificity	gene	gene406	http://www.ncbi.nlm.nih.gov/gene/?term=azo0403
azo0404	azo0404	cheD	cheD	427566	428156	-	conserved hypothetical chemotaxis protein CheD	Conserved hypothetical chemotaxis protein CheD. Homology to cheD of S. oneidensis of 41%25 (trembl|Q8EF62). Interpro: CheD (IPR005659). Pfam: CheD (PF03975). This chemotaxis protein stimulates methylation of MCP proteins. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene407	http://www.ncbi.nlm.nih.gov/gene/?term=azo0404
azo0405	azo0405	cheW1	cheW1	428223	428765	-	probable positive regulator of CheA protein activity	Probable positive regulator of CheA protein activity%2C CheW. Pfam: PF01584%3B CheW. SMART: SM00260%3B CheW. Chemotaxis protein cheW.Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. It physically bridges chea to the mcps (methyl-accepting chemotaxis proteins) to allow regulated phosphotransfer to cheY and cheB.%3B~High confidence in function and specificity	gene	gene408	http://www.ncbi.nlm.nih.gov/gene/?term=azo0405
azo0406	azo0406		azo0406	428787	431225	-	putative methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein%2C only very low similarity to SWISSPROT: sprot|Y4FA_RHISN (14%25 Rhizobium sp. (strain NGR234). InterPro: IPR004090%3B Me_chemotaxis. IPR004089%3B Chmtaxis_transd. IPR003660%3B HAMP. Pfam: PF00672%3B HAMP. PF00015%3B MCPsignal. SMART: SM00304%3B HAMP. SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Family membership	gene	gene409	http://www.ncbi.nlm.nih.gov/gene/?term=azo0406
azo0407	azo0407		azo0407	431253	433700	-	putative methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein%2C only very low similarity to SWISSPROT: sprot|Y4FA_RHISN (14%25 Rhizobium sp. (strain NGR234). InterPro: IPR004090%3B Me_chemotaxis. IPR004089%3B Chmtaxis_transd. IPR003660%3B HAMP. Pfam: PF00672%3B HAMP. PF00015%3B MCPsignal. SMART: SM00304%3B HAMP. SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices.%3B~Family membership	gene	gene410	http://www.ncbi.nlm.nih.gov/gene/?term=azo0407
azo0408	azo0408	cheA1	cheA1	433738	435933	-	putative chemotaxis protein histidine kinase	Putative chemotaxis histidine kinase protein%2CATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR002545%3B CheW. IPR004105%3B H-kinase_dim. IPR005467%3B His_kinase. IPR008207%3B Hpt. IPR008208%3B Hpt_N. Pfam: PF01584%3B CheW. PF02895%3B H-kinase_dim. PF02518%3B HATPase_c. PF01627%3B Hpt. SMART: SM00260%3B CheW. SM00387%3B HATPase_c. SM00073%3B HPT. Chemotaxis protein cheA (EC 2.7.3.-). INVOLVED IN THE TRANSMISSION OF SENSORY SIGNALS FROM THE CHEMORECEPTORS TO THE FLAGELLAR MOTORS. CHEA IS AUTOPHOSPHORYLATED%3B IT CAN TRANSFER ITS PHOSPHATE GROUP TO EITHER CHEB OR CHEY.%3B~High confidence in function and specificity	gene	gene411	http://www.ncbi.nlm.nih.gov/gene/?term=azo0408
azo0409	azo0409		azo0409	435947	436255	-	putative STAS domain protein	Putative anti-sigma factor antagonists (STAS domain protein)%2C STAS. Pfam: PF01740%3B STAS. The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.%3B~Function unclear	gene	gene412	http://www.ncbi.nlm.nih.gov/gene/?term=azo0409
azo0410	azo0410		azo0410	436258	437526	-	putative methyl-accepting chemotaxis protein	Putative methyl-accepting chemotaxis protein%2CChmtaxis_transd. Pfam: PF00015%3B MCPsignal. SMART: SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Function unclear	gene	gene413	http://www.ncbi.nlm.nih.gov/gene/?term=azo0410
azo0411	azo0411	cheY1	cheY1	437534	437899	-	probable chemotaxis response regulator	Probable chemotaxis response regulator%2C%3B~High confidence in function and specificity	gene	gene414	http://www.ncbi.nlm.nih.gov/gene/?term=azo0411
azo0412	azo0412		azo0412	438349	439440	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rsc0739 of R. solanacearum of 52%25 (trembl|Q8Y1F1). Pfam: DUF395 This family includes YeeE and YedE from E. coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this family. This region contains several conserved glycines and an invariant cysteine that is probably an important functional residue. signal peptide 8 TMHs%3B~Conserved hypothetical protein	gene	gene416	http://www.ncbi.nlm.nih.gov/gene/?term=azo0412
azo0413	azo0413	exsB	exsB	439455	440141	-	conserved hypothetical ExsB protein	Conserved hypothetical ExsB protein. Homology to exsB of P. syringae of 70%25 (trembl|Q87Y44). This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti%2C a species in which the exo genes make succinoglycan%2C a symbiotically important exopolysaccharide%2C exsB is located nearby and affects succinoglycan levels%2C probably through polar effects on exsA expression or the same polycistronic mRNA. Interpro: ExsB (IPR004479). Pfam: ExsB (PF06508). Tigrfam: TIGR00364: exsB protein. Has signal peptide present. No TMHs%3B~Family membership	gene	gene417	http://www.ncbi.nlm.nih.gov/gene/?term=azo0413
azo0414	azo0414		azo0414	440170	440832	-	conserved hypothetical radical activating enzyme	Conserved hypothetical radical activating enzyme. Homology to xac3139 of X. axonopodis of 60%25 (trembl|Q8PHW0). InterPro: Radical activating enzymes (IPR001989) Pfam: Radical activating enzyme no signal peptide no TMHs%3B~Family membership	gene	gene418	http://www.ncbi.nlm.nih.gov/gene/?term=azo0414
azo0415	azo0415		azo0415	440843	441562	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS05116 of R.solanacearum of 38%25 (trembl|Q8Y1F3(SRS)) No domains predicted. No TMHs Has signal peptide.%3B~Conserved hypothetical protein	gene	gene419	http://www.ncbi.nlm.nih.gov/gene/?term=azo0415
azo0416	azo0416	pal	pal	441562	442080	-	putative peptidoglycan-associated lipoprotein	Putative peptidoglycan-associated lipoprotein. Homology to pal of E. coli of 36%25 (sprot|PAL_ECOLI). Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan. Pfam: ompA family signal peptide no TMHs%3B~Family membership	gene	gene420	http://www.ncbi.nlm.nih.gov/gene/?term=azo0416
azo0417	azo0417	tolB	tolB	442120	443403	-	putative translocation protein TolB	Putativ translocation protein tolB. Homology to tolB of P. aeruginosa of 39%25 Involved in the tonB-independent uptake of proteins. signal peptide probable 1 TMH (unusual for TolB)%3B~High confidence in function and specificity	gene	gene421	http://www.ncbi.nlm.nih.gov/gene/?term=azo0417
azo0418	azo0418	tolA	tolA	443450	444292	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to tolA of N. europaea of 39%25 (trembl|Q82XP0). no domains predicted InterPro: Proline-rich region (IPR000694) no signal peptide 1 TMHs%3B~Conserved hypothetical protein	gene	gene422	http://www.ncbi.nlm.nih.gov/gene/?term=azo0418
azo0419	azo0419	tolR	tolR	444289	444702	-	putative translocation protein TolR	Putative translocation protein TolR. Holomology to tolR of P. aeruginosa of 30%25 (sprot|TOLR_PSEAE) Involved in eth TonB-independent uptake of proteins. no signal peptide probable 1 TMH%3B~Family membership	gene	gene423	http://www.ncbi.nlm.nih.gov/gene/?term=azo0419
azo0420	azo0420	tolQ	tolQ	444721	445395	-	translocation protein TolQ	Translocation protein TolQ. Homology to tolQ of R. solanacearum of 52%25. Involved in the tonB-independent uptake of proteins. InterPro: MotA/TolQ/ExbB proton channel family Pfam: MotA/TolQ/ExbB proton channel family no signal peptide probable 3 TMHs%3B~High confidence in function and specificity	gene	gene424	http://www.ncbi.nlm.nih.gov/gene/?term=azo0420
azo0421	azo0421		azo0421	445392	445859	-	conserved hypothetical thioesterase	Conserved hypothetical thioesterase. Homology to bb4233 of B. bronchiseptica of 41%25 (trembl|Q7WFN8). Tigrfam: TIGR00051: conserved hypothetical protein .Pfam: 4-hydroxybenzol-CoA thioesterase (PF0361). Interpro: 4-hydroxybenzol-CoA thioesterase (IPR006684)%3B thioesterase superfamily (IPR006683) This family contains a wide variety of enzymes%2C principally thioesterases. This family includes 4HBT which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate%2C they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. no signal peptide. no TMHs%3B~Family membership	gene	gene425	http://www.ncbi.nlm.nih.gov/gene/?term=azo0421
azo0422	azo0422		azo0422	445887	447230	+	hypothetical protein	SPROT:P37718: 26%25 identity%2C 43%25 similarity Cellulose synthase operon protein C precursor. Required for maximal bacterial cellulose synthesis. InterPro: STAS domain. The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. InterPro:IPR008410%3B BCSC_C. IPR003921%3B Cell_synth_C. Pfam:PF05420%3B BCSC_C%3B 1. ant_ant_sig: anti-anti-sigma factor No signal peptide present SignalP predicted). No transmembrane helices present (TMHMM predicted)%3B~Function unclear	gene	gene426	http://www.ncbi.nlm.nih.gov/gene/?term=azo0422
azo0423	azo0423	hslV	hslV	447262	447798	+	ATP-dependent protease HslV	ATP-dependent protease HslV (EC 3.4.25.-) (Heat shock protein HslV). Homology to hslV of E. coli of 69%25. Protease subunit of a proteasome-like degradation complex. InterPro: Multispecific proteasome proteases (IPR004491) no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene427	http://www.ncbi.nlm.nih.gov/gene/?term=azo0423
azo0424	azo0424	hslU	hslU	447833	449164	+	ATP-dependent Hsl protease ATP-binding subunit	ATP-dependent hsl protease ATP-binding subunit hslU. Homology to hslU of E. coli of 65%25 (sprot|HSLU_ECOLI). Chaperone subunit of a proteasome-like degradation complex (By similarity). InterPro: Heat shock protein HslVU ATPase subunit HslU(IPR004491)%2CAAA ATPase%2Ccentral region (IPR003959)%2C AAA ATPase (IPR003593) Tigrfam: hslU: heat shock protein HslVU ATPas Pfam: ATPase family associated with varius cellular no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene428	http://www.ncbi.nlm.nih.gov/gene/?term=azo0424
azo0425	azo0425	mdcF1	mdcF1	449266	450138	+	putative malonate transporter	Putative malonate transporter. subcellular location:integral membrane protein (potential). similarity: belongs to the auxin efflux carrier (tc 2.a.69) family. SPROT:P56948:24%25 identity%2C 41%25 similarity. InterPro: IPR004776%3B Auxin_eff. Pfam:PF03547%3B Auxin_eff 2a69: Auxin Efflux Carrier%3B~Specificity unclear	gene	gene429	http://www.ncbi.nlm.nih.gov/gene/?term=azo0425
azo0426	azo0426		azo0426	450142	452085	-	GGDEF/PAS-domain containing protein	GGDEF/PAS-domain containing protein	gene	gene430	http://www.ncbi.nlm.nih.gov/gene/?term=azo0426
azo0427	azo0427	hslR	hslR	452338	452742	-	heat shock protein	Heat shock protein 15 homolog (HSP15). INVOLVED IN THE RECYCLING OF FREE 50S RIBOSOMAL SUBUNITS THAT STILL CARRY A NASCENT CHAIN. BINDS RNA MORE SPECIFICALLY THAN DNA. BINDS WITH VERY HIGH AFFINITY TO THE FREE 50S RIBOSOMAL SUBUNIT. DOES NOT BIND IT WHEN IT IS PART OF THE 70S RIBOSOME%3B~Conserved hypothetical protein	gene	gene431	http://www.ncbi.nlm.nih.gov/gene/?term=azo0427
azo0428	azo0428	cysN/C	cysN/C	452792	454072	-	putative sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase	55%25 Adenylylsulfate kinase (EC 2.7.1.25) (APS kinase) (ATP adenosine-5-phosphosulfate 3-phosphotransferase)]%2C from Pseudomonas aeruginosa. FUNCTION:ATP sulfurylase may be the GTPase%2C regulating ATP sulfurylase activity (By similarity). FUNCTION:APS kinase catalyzes the synthesis of activated sulfate (By similarity). CATALYTIC ACTIVITY:ATP + sulfate %3D diphosphate + adenylylsulfate. CATALYTIC ACTIVITY:ATP + adenylylsulfate%3DADP +3'-phosphoadenylylsulfate. PATHWAY: Sulfate activation%3B cysteine biosynthesis reductive branch%3B first step. PATHWAY:Sulfate activation%3B cysteine biosynthesis reductive branch%3B second step. SUBUNIT:Heterodimer composed of cysD%2C the smaller subunit%2Cand cysN (By similarity). SIMILARITY:In the N-terminal section%3B belongs to the GTP-binding elongation factor family. CysN/nodQ subfamily. SIMILARITY:In the C-terminal section%3B Belongs to the APS kinase family. SWISSPROT:CYSN_PSEAE:O50274. InterPro:IPR002891%3BAPS_kinase.IPR004161%3BEFTU_D2.IPR009001%3B Elong_init_C.IPR000795%3B ProtSyn_GTPbind.IPR005225%3B Small_GTP.IPR009000%3B Translat_factor. Pfam:PF01583%3B APS_kinase%3B 1.PF00009%3B GTP_EFTU%3B 1.PF03144%3B GTP_EFTU_D2%3B1. TIGRFAMs:TIGR00455%3B apsK%3B 1.TIGR00231%3B small_GTP%3B 1.%3B~High confidence in function and specificity	gene	gene432	http://www.ncbi.nlm.nih.gov/gene/?term=azo0428
azo0429	azo0429	cysD	cysD	454492	455406	-	putative sulfate adenylyltransferase subunit 2	84%25 PAPS_reduct. Pfam:PF01507%3B PAPS_reduct%3B 1.%3B~High confidence in function and specificity	gene	gene433	http://www.ncbi.nlm.nih.gov/gene/?term=azo0429
azo0430	azo0430	cysH	cysH	455534	456304	-	probable phosphoadenylyl-sulfate reductase	Probabel phosphoadenylyl-sulfate reductase. Homology to csyH of V. sinosum of 55%25 (trembl|Q9L9V0). Phosphoadenosine phosphosulphate reductase (EC: 1.8.4.8) is involved in the assimilation of inorganic sulphate. In a reaction requiring reduced thioredoxin and NADPH%2C it converts 3'-phosphoadenylylsulphate (PAPS) to sulphite and adenosine 3'%2C5' diphosphate (PAP). Interpro: Phosphoadenosine phosphosulfate reductase cysH-type (IPR004511)%3B Phosphoadenosine phophsulfate reductase (IPR002500) Tigrfam: cysH: phosophoadenylyl-sulfate reductase Pfam: Phsphadenosine phosphosulfate reductase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene434	http://www.ncbi.nlm.nih.gov/gene/?term=azo0430
azo0431	azo0431		azo0431	456301	456831	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to PA1837 of P.aeruginosa of 50%25 (tremble:Q9I2Q8). Has PF06073%2CBacterial protein of unknown function (DUF934)%3BIPR008318 UCP030820: This family consists of several bacterial proteins of unknown function. One of the members of this family Q8YEW3 is thought to be an oxidoreductase. No signal peptide. No TMHs	gene	gene435	http://www.ncbi.nlm.nih.gov/gene/?term=azo0431
azo0432	azo0432	cysI	cysI	456824	458506	-	putative sulfite reductase	49%25 Fd-NiR.IPR011255%3B NiR_SiRalpha_1/3.IPR006067%3B Nir_Sir_4Fe4S.IPR005117%3B NiR_SiR_beta_fer. Pfam:PF01077%3B NIR_SIR%3B 2.PF03460%3B NIR_SIR_ferr%3B 2.%3B~High confidence in function and specificity	gene	gene436	http://www.ncbi.nlm.nih.gov/gene/?term=azo0432
azo0433	azo0433		azo0433	458559	459338	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to bll1489 of B. japonicum of 58%25 (trembl|Q89UC8(SRS)) InterPro:IPR002781%3B DUF81. Pfam:PF01925%3B DUF81 Presence of 8 transmembrane helices (TMHMM predicted) probable transmembrane protein of unknown function) no signal peptide%3B~Conserved hypothetical protein	gene	gene437	http://www.ncbi.nlm.nih.gov/gene/?term=azo0433
azo0434	azo0434	cysB	cysB	459444	460385	+	transcriptional regulator CysB	HTH-type transcriptional regulator cysB (Cys regulon transcriptional activator). this protein is a positive regulator of gene expression for the cysteine regulon%2C a system of 10 or more loci involved in the biosynthesis of l-cysteine from inorganic sulfate. the inducer for cysb is n-acetylserine. cysb inhibits its own transcription.%3B~High confidence in function and specificity	gene	gene438	http://www.ncbi.nlm.nih.gov/gene/?term=azo0434
azo0435	azo0435		azo0435	460530	461414	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal peptide present. No TMHs	gene	gene439	http://www.ncbi.nlm.nih.gov/gene/?term=azo0435
azo0436	azo0436		azo0436	461424	462398	-	L-asparaginase II precursor	L-asparaginase precursor (EC 3.5.1.1) (L-asparagine amidohydrolase) (L-ASNase).%3B~Family membership	gene	gene440	http://www.ncbi.nlm.nih.gov/gene/?term=azo0436
azo0437	azo0437		azo0437	462427	463827	-	probable aspartate ammonia-lyase	Region start changed from 463959 to 463827 (-132 bases)	gene	gene441	http://www.ncbi.nlm.nih.gov/gene/?term=azo0437
azo0438	azo0438	ansB2	ansB2	463964	465061	-	periplasmic L-asparaginase II	L-asparaginase precursor (EC 3.5.1.1) (L-asparagine amidohydrolase) (L-ASNase).%3B~High confidence in function and specificity	gene	gene442	http://www.ncbi.nlm.nih.gov/gene/?term=azo0438
azo0439	azo0439	glnQ1	glnQ1	465187	465915	-	probable glutamine transport ATP-binding protein	Glutamine transport ATP-binding protein glnQ. Homology with glnQ of B. stearothermophilus of 56%25 (sprot|GLNQ_BACST). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR GLUTAMINE. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. InterPro: AAA ATPase superfamily (IPR003593)%2C ABC_transporter (IPR003439)%2C ATP/GTP_binding site motif A (P-loop) (IPR001687) Pfam: ABC transporter no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene443	http://www.ncbi.nlm.nih.gov/gene/?term=azo0439
azo0440	azo0440	glnM	glnM	465947	466627	-	putative glutamine transport permease protein	Putative glutamine transport permease protein. Homology to glnM of B. subtilis of 30%25 (TREMBL:O34671) Probably part of the binding-protein-dependent transport system of amino acids. Probably responsible for the translocation of the substrate across the membrane InterPro: Binding-protein-dependent transport systems inner membrane component (IPR000515) Pfam: Binding-protein-dependent transport systems inner membrane component no signal peptide probable 5 TMHs%3B~Family membership	gene	gene444	http://www.ncbi.nlm.nih.gov/gene/?term=azo0440
azo0441	azo0441	glnP	glnP	466629	467366	-	putative glutamine transport permease protein	Glutamate/aspartate transport system permease protein gltJ. Homology to glnP of B. subtilis of 23%25 (CAA93320). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR AMINO ACID%3B PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. InterPro: Binding-protein-dependent transport systems inner membrane component (IPR000515) Pfam: Binding-protein-dependent transport systems inner membrane component HTH-motif probable 4 TMHs no signal peptide%3B~Family membership	gene	gene445	http://www.ncbi.nlm.nih.gov/gene/?term=azo0441
azo0442	azo0442	glnH	glnH	467763	468662	-	putative glutamine-binding protein	Putative glutamine-binding protein. Homology to glnH of B. stearothermophilus of 28%25 (sprot|GLNH_BACST). Involved in glutamine-transport system. Interacts with the glutamine-transport system glnPQM. Pfam: Bacterial extracellular solute binding protein no TMHs signal peptide%3B~Family membership	gene	gene446	http://www.ncbi.nlm.nih.gov/gene/?term=azo0442
azo0443	azo0443		azo0443	468959	470002	+	beta-lactamase	Conserved Hypothetical protein(Metallo-beta-lactamase superfamily). Has PF00753%2C Metallo-beta-lactamase superfamily%3B IPR001279%2C Blactmase-like%3BThese proteins include thiolesterases%2C members of the glyoxalase II family%2C that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.%3B~Family membership	gene	gene447	http://www.ncbi.nlm.nih.gov/gene/?term=azo0443
azo0444	azo0444	lig2	lig2	469999	471642	+	DNA ligase	DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). This protein seals during DNA replication DNA recombination and DNA repair nicks in double-stranded DNA (By similarity).%3B~High confidence in function and specificity	gene	gene448	http://www.ncbi.nlm.nih.gov/gene/?term=azo0444
azo0445	azo0445		azo0445	471695	474442	+	probable ATP-dependent helicase	Putative ATP-dependent helicase MTH1802. TREMBL:Q88NV1: 57%25 identity%2C 66%25 similarity InterPro:IPR001410%3B DEAD/DEAH box helicase IPR001650%3B Helicase_C. Pfam: PF00270%3B DEAD%3B 1. PF00271%3B Helicase_C%3B 1. SMART: SM00487%3B DEXDc%3B 1. SM00490: HELICc livcs: branched-chain amino acid trans Non secretory protein with low probablity of cleavage site (0.167): Signal P predicted. No transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity	gene	gene449	http://www.ncbi.nlm.nih.gov/gene/?term=azo0445
azo0446	azo0446		azo0446	474445	475113	+	conserved hypothetical protein	Probable Hypothetical protein MJ0037. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases%2C including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of Escherichia coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal TREMBL:Q88NV2: 46%25 identity%2C 59%25 similarity InterPro:IPR004843%3B M-ppestrase. Pfam: PF00149%3B Metallophos%3B No transmembrane helices TIGR00024: conserved hypothetical prot%3B~Function unclear	gene	gene450	http://www.ncbi.nlm.nih.gov/gene/?term=azo0446
azo0447	azo0447	dctD1	dctD1	475122	476456	-	transcriptional regulatory protein	C4-dicarboxylate transport transcriptional regulatory protein%2C%3B~High confidence in function and specificity	gene	gene451	http://www.ncbi.nlm.nih.gov/gene/?term=azo0447
azo0448	azo0448	dctB1	dctB1	476453	478414	-	sensor histidine kinase	C4-dicarboxylate transport sensor protein%2C%3B~High confidence in function and specificity	gene	gene452	http://www.ncbi.nlm.nih.gov/gene/?term=azo0448
azo0449	azo0449	kefB	kefB	478380	480146	-	putative glutathione-regulated potassium-efflux system protein	Glutathione-regulated potassium-efflux system protein kefB%2C(K+/H+ antiporter).Transport system that facilitates potassium-efflux possibly by potassium-proton antiport. 32%25 K_eff.IPR006153%3B Na_H_porter.IPR006036%3BTrkA_Kuptake. IPR003148%3B TrkA_N. Pfam:PF00999%3B Na_H_Exchanger%3B 1.PF02254%3B TrkA-N%3B 1. TIGRFAMs:TIGR00932%3B 2a37%3B 1. TMHelix:12. Belongs to the monovalent cation:proton antiporter 2 (cpa2) transporter (TC 2.A.37) family. KefB subfamily.%3B~High confidence in function and specificity	gene	gene453	http://www.ncbi.nlm.nih.gov/gene/?term=azo0449
azo0450	azo0450		azo0450	480291	482036	+	PAS/PAC/GGDEF-domain containing protein	PAS/PAC/GGDEF-domain containing protein%2Cimplicating involvement into signalling processes. Similarity to TREMBL: trembl|Q98JA6 (30%25 Rhizobium loti%2Chypothetical protein mlr2027) InterPro: IPR000160 GGDEF. IPR001610 PAC. IPR000700 PAS-assoc_C. IPR000014 PAS_domain. Pfam: PF00990 GGDEF. SMART: SM00086 PAC. SM00091 PAS. TIGRFAM: TIGR00254 GGDEF. TIGR00229 sensory_box.	gene	gene454	http://www.ncbi.nlm.nih.gov/gene/?term=azo0450
azo0451	azo0451		azo0451	482053	482613	-	hypothetical secreted protein	Hypothetical secreted protein. No homology with hits in the Database. No domains predicted. Signal peptide present. No TMHs	gene	gene455	http://www.ncbi.nlm.nih.gov/gene/?term=azo0451
azo0452	azo0452	trxB1	trxB1	482675	483571	-	putative thioredoxin-disulfide reductase	Putative thioredoxin reductase. Homology to trxB of S. coelicolor of 25%25 (sprot|TRXB_STRCO). Catalyse the reaction: thioredoxin + nadp(+) %3D thioredoxin disulfide + nadph. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs%3B~Family membership	gene	gene456	http://www.ncbi.nlm.nih.gov/gene/?term=azo0452
azo0453	azo0453	atm1	atm1	483653	485464	-	probable composite transport ATP-binding permase protein	Probable composite transport ATP-binding permease protein. Homology to amt1 of S. cereviciae of 48%25 (sprot|ATM1_YEAST). COULD BE INVOLVED IN THE TRANSPORT OF yet unknow substrates (probable HEME) FROM THE MITOCHONDRIA TO THE CYTOSOL. InterPro: ABC transporter transmembrane region (IPR001140)%2C ATP/GTP-binding site motif A (P loop) (IPR001687)%2C ABC transporter (IPR003439)%2CAAA_ATPase sperfamily (IPR003593) Pfam: ATP transporter%2CABC transporter transmembrane region no signal peptide probable 6 TMHs%3B~Specificity unclear	gene	gene457	http://www.ncbi.nlm.nih.gov/gene/?term=azo0453
azo0454	azo0454		azo0454	485487	486122	-	conserved hypothetical threonine efflux protein	Conserved hypothetical threonine efflux protein. Homology to rsc0148 of R. solanaxearum of 52%25 (trembl|Q8Y2B8). InterPro: Lysine exporter protein (LYSE/YGGA) (IPR001123) Pfam: LysE type translocator Tigrfam: 2A76: Homoserine/Threonine efflux protein signal peptide Probable 6 TMHs%3B~Family membership	gene	gene458	http://www.ncbi.nlm.nih.gov/gene/?term=azo0454
azo0455	azo0455		azo0455	486445	487725	+	putative cobalmin snthesis protein	This family of proteins contains P47K%2C a Pseudomonas chlororaphis protein needed for nitrile hydratase expression%2C and the cobW gene product%2C which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans [1]. TREMBL:Q8YJP6: 40%25 identity%2C 54%25 similarity. Pfam:PF02492%3B Cobalmine synthesis protein%3B pfkB family carbohydrate kinase%3B FAD binding domain. TIGRFAM:proC: pyrroline 5 carboxylate reductase. mobB: molybdopterin-guanine dinucleotide%3B~Family membership	gene	gene459	http://www.ncbi.nlm.nih.gov/gene/?term=azo0455
azo0456	azo0456		azo0456	487845	488045	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide. no TMHs	gene	gene460	http://www.ncbi.nlm.nih.gov/gene/?term=azo0456
azo0457	azo0457	ragA	ragA	488198	488884	+	two-component response regulator	Response regulator%2C%3B~High confidence in function and specificity	gene	gene461	http://www.ncbi.nlm.nih.gov/gene/?term=azo0457
azo0458	azo0458	ragB	ragB	488874	490262	+	putative two component sensor kinase	Putative sensor kinase%2C%3B~High confidence in function and specificity	gene	gene462	http://www.ncbi.nlm.nih.gov/gene/?term=azo0458
azo0459	azo0459	amtD	amtD	490448	491650	+	probable ammonia permease	Putative ammonium transporter MJ1343. A number of evolutionarily-related proteins have been found to be involved in the transport of ammonium ions across membranes.Represent a family of high affinity ammonium transporters. These proteins are highly hydrophobic and seem to contain from 10 to 12 transmembrane domain. TREMBL:Q88L29: 73%25 identity%2C 84%25 similarity InterPro: Ammonium transporter family InterPro: IPR001905%3B Ammonium_transpt. IPR010256%3B RH_like_transpt. Pfam: PF00909%3B Ammonium_transp%3B 1. PROSITE: PS01219%3B AMMONIUM_TRANSP amt: ammonium transporter Non secretory protein with signal peptide probability of 0.174 (SignalP predicted) TMHMM predicted 11 TMH's%3B~High confidence in function and specificity	gene	gene463	http://www.ncbi.nlm.nih.gov/gene/?term=azo0459
azo0460	azo0460	dnr	dnr	491666	492280	-	putative Dnr-like transcriptional activator	Putative Dnr-like transcriptional activator. Similar to SWISSPROT: sprot|FIXK_RHIME (28%25 Rhizobium meliloti%2C FixK) InterPro: IPR000595 cNMP_binding. IPR001808 HTH_Crp. Pfam: PF00027 cNMP_binding. HTH reporting nucleic acid binding motif.%3B~Family membership	gene	gene464	http://www.ncbi.nlm.nih.gov/gene/?term=azo0460
azo0461	azo0461		azo0461	492369	492854	+	hypothetical secreted protein	Hypthetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Has signal peptide.	gene	gene465	http://www.ncbi.nlm.nih.gov/gene/?term=azo0461
azo0462	azo0462		azo0462	492897	495704	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to an orf of Trichodesmium erythraeum of 45%25 (gi|48892210|ref|ZP_00325608.1|(NBCI ENTREZ)). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene466	http://www.ncbi.nlm.nih.gov/gene/?term=azo0462
azo0463	azo0463	fadE	fadE	495962	498433	+	probable acyl-CoA dehydrogenase	Probable acyl-CoA dehydrogenase. Homology to fadE of E. coli of 55%25 (trembl|Q8KTJ8(SRS)) Catalyzes the dehydrogenation of acyl-CoA (By similarity). Reaction: acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor. InterPro: Acyl-CoA dehydrogenase (IPR006089) Pfam: Acyl-CoA dehydrogenase%2C N-terminal domain%3B Acyl-CoA dehydrogenase%2C C-terminal domain signal peptide 2 TMHs%3B~High confidence in function and specificity	gene	gene467	http://www.ncbi.nlm.nih.gov/gene/?term=azo0463
azo0464	azo0464	fadA1	fadA1	498430	499902	+	probable 3-ketoacyl-CoA thiolase	subunit of fatty acid oxidation complex%2C 3-keto-acyl-coa-thiolase. Activity:-acyl-CoA + acetyl-CoA %3D CoA + 3-oxoacyl-CoA Entry name TREMBL:Q8G967 Prim. accession # Q8G967 Identities %3D 284/425 (66%25) InterPro IPR002155%3B Thiolase. Pfam PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Family membership	gene	gene468	http://www.ncbi.nlm.nih.gov/gene/?term=azo0464
azo0465	azo0465	fadB1	fadB1	499899	501935	+	probable enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase	alpha-subunit of fatty acid oxidation complex. Entry name TREMBL:Q8G968 Prim. accession # Q8G968 Identities %3D 373/642 (58%25) InterPro IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0 IPR008927%3B 6DGDH_C_like. IPR001753%3B EnCoA_hydrtse. Pfam PF00725%3B 3HCDH%3B 1. PF02737%3B 3HCDH_N%3B 1. PF00378%3B ECH%3B 1.%3B~Family membership	gene	gene469	http://www.ncbi.nlm.nih.gov/gene/?term=azo0465
azo0466	azo0466		azo0466	501932	502336	+	conserved hypothetical acyl-CoA thioesterase	Conserved hypothetical acyl-CoA thioesterase. Homology to an orf of Azoarcus sp. EbN1 (trembl|Q8G9D6). Pfam: cytosolic long-chain acyl-CoA thioesterase Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate%2C they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. Interpro: Thioesterase superfamily (IPR006683) no signal peptide no. TMHs%3B~Family membership	gene	gene470	http://www.ncbi.nlm.nih.gov/gene/?term=azo0466
azo0467	azo0467	fadL	fadL	502438	503721	+	probable long-chain fatty acid transport protein	Long-chain fatty acid transport protein precursor (Outer membrane fadL protein) (Outer membrane flp protein). Involved in translocation of long-chain fatty acids across the outer membrane. FadL may form a specific channel (By similarity). Entry name:- Q8G9D7 Primary accession number:-Q8G9D7 InterPro:- IPR005017%3B Toluene_X. Pfam:- PF03349%3B Toluene_X%3B 1. identity:- 66%25 Prediction: Signal peptide Signal peptide probability: 1.0 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene471	http://www.ncbi.nlm.nih.gov/gene/?term=azo0467
azo0468	azo0468	fadB2	fadB2	503770	506154	+	probable 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase	Short-chain enoyl-CoA hydratase activity . Activity:- 3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O Entry name TREMBL:Q8P986 Prim. accession # Q8P986 InterPro IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. IPR008927%3B 6DGDH_C_like. IPR001753%3B EnCoA_hydrtse. IPR000205%3B NAD_BS. Pfam PF00725%3B 3HCDH%3B 1. PF02737%3B 3HCDH_N%3B 1. PF00378%3B ECH%3B 1. Identities %3D 468/796 (58%25) Prediction: Signal peptide Signal peptide probability: 0.980 Number of predicted TMHs: 0%3B~Family membership	gene	gene472	http://www.ncbi.nlm.nih.gov/gene/?term=azo0468
azo0469	azo0469	fadA2	fadA2	506636	507868	+	probable 3-ketoacyl-CoA thiolase	Activity:- acyl-CoA + acetyl-CoA %3D CoA + 3-oxoacyl-CoA Entry name:- SWISSPROT:THIK_ECOLI Prim. accession # P21151 InterPro:- IPR002155%3B Thiolase. Pfam:-PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Identities %3D 177/400 (44%25) Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene473	http://www.ncbi.nlm.nih.gov/gene/?term=azo0469
azo0470	azo0470	paaG2	paaG2	507945	508745	+	putative enoyl-CoA hydratase	Function:- COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). CATALYTIC ACTIVITY:-(3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H(2)O. Entry name SWISSPROT:PAAG_ECOLI Prim. accession # P77467 InterPro:- IPR001753%3B EnCoA_hydrtse. Pfam:-PF00378%3B ECH%3B 1. Identities %3D 92/265 (34%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene474	http://www.ncbi.nlm.nih.gov/gene/?term=azo0470
azo0471	azo0471		azo0471	508774	509625	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to cv1508 of C. violaceum of 37%25 (trembl|Q7NXW8). Pfam: uncharacterized ACR%2C COG1434. no signal peptide. 2 TMHs%3B~Conserved hypothetical protein	gene	gene475	http://www.ncbi.nlm.nih.gov/gene/?term=azo0471
azo0472	azo0472		azo0472	509624	510913	+	probable O-acetylhomoserine aminocarboxypropyltransferase	Probable O-acetylhomoserine aminocarboxypropyltransferase. Homology to cysD of A. nidulans of 54%25 (sprot|CYSD_EMENI). Transforms O-acetylhomoserine into homocysteine. InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes (IPR000277) Pfam: Cys/Met metabolism PLP-dependent enzymes no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene476	http://www.ncbi.nlm.nih.gov/gene/?term=azo0472
azo0473	azo0473		azo0473	510910	511497	+	hypothetical membrane protein	Hypothetical membrane protein. No good homology to the data bank. No domains predicted. 1 TMHs No signal peptide present.	gene	gene477	http://www.ncbi.nlm.nih.gov/gene/?term=azo0473
azo0474	azo0474		azo0474	511494	512357	+	peptidoglycan-binding protein	Exported protein with sporulation related repeat. Pfam: Sporulation related repeat. InterPro: Proline-rich region%3B~Function unclear	gene	gene478	http://www.ncbi.nlm.nih.gov/gene/?term=azo0474
azo0475	azo0475		azo0475	512441	512881	+	conserved hypothetical protein	Conserved hypothetical protein%2C 35%25 identity to TrEMBL%3BQ8ENH9 Has PF02623%2C Uncharacterized BCR%2C COG1699%3B IPR003775%2C DUF180 :This entry describes proteins of unknown function.%3B~Function unclear	gene	gene479	http://www.ncbi.nlm.nih.gov/gene/?term=azo0475
azo0476	azo0476		azo0476	512981	513361	+	conserved hypothetical endoribonuclease L-PSP	Conserved hypothetical endoribonuclase L-PSP. Homology to orf1 of A. vineladii of 74%25 (sprot|YVN1_AZOVI(SRS)) This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested. Tigrfam: Endoribonuclease L-PSP%2C putative Pfam: Endoribonuclease L-PSP (%3DYipgF family) no TMHs weak indication for signal peptide%3B~Conserved hypothetical protein	gene	gene480	http://www.ncbi.nlm.nih.gov/gene/?term=azo0476
azo0477	azo0477	recG	recG	513369	515408	+	ATP-dependent DNA helicase	ATP-dependent DNA helicase recG (EC 3.6.1.-). Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3 to 5 polarity. recG unwind branched duplex DNA (Y-DNA). Has a role in constitutive stable DNA replication (csdR) and R-loop formation (By similarity). InterPro: ATP-dependent DNA helicase RecG recG: ATP-dependent DNA helicase RecG%3B~High confidence in function and specificity	gene	gene481	http://www.ncbi.nlm.nih.gov/gene/?term=azo0477
azo0478	azo0478	ubiC	ubiC	515463	516032	+	putative chorismate:pyruvate lyase	Chorismate:pyruvate lyase (EC 4.-.-.-). catalytic activity: chorismate %3D 4-hydroxybenzoate + pyruvate. pathway: ubiquinone biosynthesis%3B first step.%3B~Specificity unclear	gene	gene482	http://www.ncbi.nlm.nih.gov/gene/?term=azo0478
azo0479	azo0479	ubiA	ubiA	516019	516882	+	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) (4-HB polyprenyltransferase). Synthesis of 3-octaprenyl-4-hydroxybenzoate. InterPro: UbiA prenyltransferase%3B~High confidence in function and specificity	gene	gene483	http://www.ncbi.nlm.nih.gov/gene/?term=azo0479
azo0480	azo0480		azo0480	516980	520849	-	conserved hypothetical iron-sulfur binding oxidase	Conserved hypothetical irons-sulfur binding oxidase. Homology to cv4235 of C. violaceum of 70%25 (trembl|Q7NQA5) Pfam: FAD binding domain%3B FAD linked oxidase%2C Cterminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~Family membership	gene	gene484	http://www.ncbi.nlm.nih.gov/gene/?term=azo0480
azo0481	azo0481		azo0481	520972	521325	-	conserved hypothetical protein		gene	gene485	http://www.ncbi.nlm.nih.gov/gene/?term=azo0481
azo0482	azo0482		azo0482	521370	521783	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to yqaA of Nitrosomonas europaea of 50%25 (trembl|Q82TH7(SRS)) No domains predicted. Signal peptide present. TMHMM2 reporting presence of 2 TMH's.%3B~Conserved hypothetical protein	gene	gene486	http://www.ncbi.nlm.nih.gov/gene/?term=azo0482
azo0483	azo0483		azo0483	521919	522353	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA4874 of P.aeruginosa of 36%25 (trembl|Q9HUT9(SRS)) No domains predicted. Signal petide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene487	http://www.ncbi.nlm.nih.gov/gene/?term=azo0483
azo0484	azo0484		azo0484	522433	523299	-	FHA domain containing protein	FHA domain containing protein. Best similarity to SWISSPROT: sprot|REPB_AGRRH (9%25 Agrobacterium rhizogenes%2Cpossible replication protein b) Pfam: PF00211 Adenylate and Guanylate cyclase catalytic domain. SMART: SM00240 FHA Forkhead associated domain.	gene	gene488	http://www.ncbi.nlm.nih.gov/gene/?term=azo0484
azo0485	azo0485		azo0485	523396	524316	-	conserved hypothetical protein	Homology to hypothetical protein ydaO. InterPro: Uncharacterized protein family UPF0021	gene	gene489	http://www.ncbi.nlm.nih.gov/gene/?term=azo0485
azo0486	azo0486		azo0486	524389	525135	-	conserved hypothetical short-chain dehydrogenase	Conserved hypothetical short-chain dehydrogenase. Homology to cv4132 of C. violaceum of 60%25 (trembl:Q7NQK5). Pfam: short-chain dehydorgenase (PF00106). no signal peptide. no TMHs%3B~Family membership	gene	gene490	http://www.ncbi.nlm.nih.gov/gene/?term=azo0486
azo0487	azo0487		azo0487	525247	526419	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to NE1166 of N.europaea of 49%25 (tremble:Q82VC8) Has PF02636%2CUncharacterized ACR%2C COG1565%3BIPR003788 %2CDUF185%3B This family contains several uncharacterised proteins. Q8YI87 has been described as an ATP synthase beta subunit transcription termination factor rho protein. No signal peptide. No TMHs.	gene	gene491	http://www.ncbi.nlm.nih.gov/gene/?term=azo0487
azo0488	azo0488		azo0488	526459	526677	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA3372 of Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA3372(KEGG)). No domains predicted. No signal peptide. No TMHs.	gene	gene492	http://www.ncbi.nlm.nih.gov/gene/?term=azo0488
azo0489	azo0489		azo0489	526664	526792	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene493	http://www.ncbi.nlm.nih.gov/gene/?term=azo0489
azo0490	azo0490		azo0490	526887	527693	-	putative acetone-cyanohydrin lyase	TREMBL:Q8F3A6: 43%25 identity%2C 60%25 similarity Non-heme chloroperoxidase (EC 1.11.1.10) (Chloride peroxidase) (CPO-P) (Chloroperoxidase P). CHLORINATES AND BROMINATES SUITABLE ORGANIC COMPOUNDS. INVOLVED IN THE BIOSYNTHESIS OF THE ANTIBIOTIC PYRROLNITRIN. InterPro: Alpha/beta hydrolase fold InterPro:IPR000073%3B A/b_hydrolase. IPR003089: AB_hydrolase. IPR000379: Ser_estrs. Pfam:PF00561%3B Abhydrolase_1%3B 1 TIGRFAM:dsbE: periplasmic protein thiol:disulf%3B~Family membership	gene	gene494	http://www.ncbi.nlm.nih.gov/gene/?term=azo0490
azo0491	azo0491	isoJ	isoJ	527690	528310	-	probable glutathione S-transferase	Probable glutathione S-transferase. Homology to isoJ of Rhodococcus sp AD45 of 48%25 (trembl|Q9RBP3). Catalysis of the reaction: R-X + glutathione %3D H-X + R-S-glutathione. R may be an aliphatic%2C aromatic or heterocyclic group%3B X may be a sulfate%2C nitrile or halide group. Pfam: Glutathione S-transferase%2C N-terminal domain%3B Glutathione S-transferase%2C C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene495	http://www.ncbi.nlm.nih.gov/gene/?term=azo0491
azo0492	azo0492		azo0492	528392	528589	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to BH1226 of Bacillus halodurans of 40%25 (pir|B83803) no domains predicted. signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene496	http://www.ncbi.nlm.nih.gov/gene/?term=azo0492
azo0493	azo0493	cca1	cca1	528605	529843	-	tRNA-nucleotidyltransferase	tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme). This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site. HDIG: uncharacterized domain HDIG%3B~Family membership	gene	gene497	http://www.ncbi.nlm.nih.gov/gene/?term=azo0493
azo0494	azo0494	sspA1	sspA1	529843	530487	-	putative stringent starvation protein A	Putative stringent starvation protein A. Homology to sspA of E. coli of 26%25 (sprot|SSPA_ECOLI). FORMS AN EQUIMOLAR COMPLEX WITH THE RNA POLYMERASE HOLOENZYME (RNAP) BUT NOT WITH THE CORE ENZYME. IT IS SYNTHESIZED PREDOMINANTLY WHEN CELLS ARE EXPOSED TO AMINO ACID STARVATION AT WHICH TIME IT ACCOUNTS FOR OVER 50%25 OF THE TOTAL PROTEIN SYNTHESIZED. InterPro: Glutathione S-transferase N terminus (IPR001045) Pfam: Glutathione S-transferase%2C N-terminal domaine no signal peptide no TMHs%3B~Family membership	gene	gene498	http://www.ncbi.nlm.nih.gov/gene/?term=azo0494
azo0495	azo0495		azo0495	530568	531536	-	putative NADH dehydrogenase	33%25%3B~Specificity unclear	gene	gene499	http://www.ncbi.nlm.nih.gov/gene/?term=azo0495
azo0496	azo0496	sltY	sltY	531552	533480	-	putative soulbe lytic murein transglycosylase	Putative soluble lytic murein transglycosylase. Homology to slt of E. coli of 24%25 (sprot|SLT_ECOLI). Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division. InterPro: SLT domain (IPR000189) Pfam: Transglycosylase SLT domain singal peptide no TMHs%3B~High confidence in function and specificity	gene	gene500	http://www.ncbi.nlm.nih.gov/gene/?term=azo0496
azo0497	azo0497		azo0497	533521	534114	+	CAL93114.1	5-formyltetrahydrofolate cyclo-ligase InterPro: 5-formyltetrahydrofolate cyclo-ligase%3B~Specificity unclear	gene	gene501	http://www.ncbi.nlm.nih.gov/gene/?term=azo0497
azo0498	azo0498		azo0498	534121	536826	-	GGDEF/PAS/PAC-domain containing protein	GGDEF/PAS/PAC-domain containing protein. Similarity to SWISSPROT: sprot|Y4LL_RHISN (13%25 Rhizobium sp. (strain NGR234)%2C hypothetical 91.8 kda protein y4ll) / TREMBL: trembl|Q55955 (14%25 Synechocystis sp. (strain PCC 6803)%2Csll0779) Pfam: PF00990 GGDEF domain. PF00989 PAS. PF00785 PAC. TIGRFAM: TIGR00254 putative diguanylate cyclase (GGDEF) domain. TIGR00229 PAS domain S-box. TMHMM reporting 2 transmembrane helices.	gene	gene502	http://www.ncbi.nlm.nih.gov/gene/?term=azo0498
azo0499	azo0499	pheC	pheC	536846	537652	-	putative cyclohexadienyl dehydratase	Putative cyclohexadienyl dehydratase precursor. Homology to pheC of P. aeruginosa of 36%25 (sprot|PHEC_PSEAE) FORMS ALTERNATIVE PATHWAY FOR PHENYLALANINE BIOSYNTHESIS. CAN CATALYZE TWO REACTIONS: PREPHENATE DEHYDRATASE AND AROGENATE DEHYDRATASE. MAY HAVE A ROLE IN CHEMOTAXIS OR TRANSPORT. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638)%2C solute-binding protein/glutamate receptor (IPR001311) Pfam: Bacterial extracellular solute-binding proteins signal peptide no TMHs%3B~Function unclear	gene	gene503	http://www.ncbi.nlm.nih.gov/gene/?term=azo0499
azo0500	azo0500	ilvA	ilvA	537808	539328	-	probable threonine dehydratase	Probable Threonine dehydratase(EC 4.3.1.19) (Threonine deaminase%2C Threonine ammonia-lyase). Homology to ilv1 of A. adeninovorans of 52%25 (sprot|THDH_ARXAD). Catalyzes the formation of alpha-ketobutyrate from threonine in a two-step reaction. The first step is a dehydration of threonine followed by rehydration and liberation of ammonia. InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family (IPR001926)%2CSerine/Threonine dehydratase pyridoxal-hposphate attachment site (IPR000634)%2C C-terminal domain of threonine dehydratase (IPR001721) Pfam: Pyridoxal-phosphate dependent enzyme%2C C-terminal doman of threonin dehydratase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene504	http://www.ncbi.nlm.nih.gov/gene/?term=azo0500
azo0501	azo0501	hprK	hprK	539453	540394	-	probable Hpr serine kinase/phosphatase	Probable Hpr kinase/phosphorylase%2C Hpr_kinase. Pfam: PF02603%3B Hpr_kinase. TIGRFAM:TIGR00679%3B hpr-ser.%3B~High confidence in function and specificity	gene	gene505	http://www.ncbi.nlm.nih.gov/gene/?term=azo0501
azo0502	azo0502	ptsN	ptsN	540363	540848	-	protein-Npi-phosphohistidine-sugar phosphotransferase	Probable nitrogen regulatory IIA protein%2C%3B~High confidence in function and specificity	gene	gene506	http://www.ncbi.nlm.nih.gov/gene/?term=azo0502
azo0503	azo0503	rpoX	rpoX	540982	541305	-	probable sigma-54 modulation protein	Probable sigma 54 modulation protein%2C%3B~High confidence in function and specificity	gene	gene507	http://www.ncbi.nlm.nih.gov/gene/?term=azo0503
azo0504	azo0504	rpoN1	rpoN1	541320	542780	-	RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Similar to SWISSPROT: sprot|RP54_PSEAE (51%25 Pseudomonas aeruginosa%2C RNA polymerase sigma-54 factor RpoN) / sprot|RP54_ECOLI (46%25 Escherichia coli%2C RpoN or NtrA) InterPro: IPR000394 Sigma54_factor. Pfam: PF00309 Sigma54_AID. PF04963 Sigma54_CBD. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene508	http://www.ncbi.nlm.nih.gov/gene/?term=azo0504
azo0505	azo0505	yhbG	yhbG	542790	543512	-	probable ATPase component of ABC transporter	Probable ABC transporter ATP-binding protein HI1148. ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. TREMBL:Q7NST9: 64%25 identity%2C75%25 similarity InterPro: IPR003593%3B AAA_ATPase. IPR003439%3B ABC_transporter. IPR000767%3B Disease_resist. IPR003016%3B Lipoyl_BS. Pfam PF00005%3B ABC_tran%3B 1 mobB: molybdopterin-guanine dinucleoti TMH's present 0%3B~High confidence in function and specificity	gene	gene509	http://www.ncbi.nlm.nih.gov/gene/?term=azo0505
azo0506	azo0506	recX	recX	543499	543948	-	probable RecX-family regulatory protein	Regulatory protein recX. Modulates recA activity (By similarity). TREMBL: Q7WKM9: 45%25 identity%2C 63%25 similarity InterPro: RecX regulatory protein InterPro%3B IPR003783%3B RecX. Pfam: PF02631%3B RecX PPR: pentatricopeptide repeat domain No transmembrane helices present%3B~Family membership	gene	gene510	http://www.ncbi.nlm.nih.gov/gene/?term=azo0506
azo0507	azo0507	recA	recA	543971	545005	-	recombinase A	Recombinase A. Homology to recA of H. seropedicae of 80%25 (sprot|RECA_HERSE) Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA the ATP-dependent uptake of single-stranded DNA by duplex DNA and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation and leading to its autocatalytic cleavage (By similarity). InterPro: RecA bacterial DNA recombination protein mobB: molybdopterin-guanine dinucleotid%3B~High confidence in function and specificity	gene	gene511	http://www.ncbi.nlm.nih.gov/gene/?term=azo0507
azo0508	azo0508	ygaD1	ygaD1	545130	545615	-	probable CinA-related protein	Hypothetical 17.2 kDa protein 1 in recA 5region. TREMBL:Q9KUH9: 54%25 identity%2C 64%25 similarity CinA is the first gene in the competence-inducible (cin) operon%2C and is thought to be specifically required at some stage in the process of transformation [1]. This is a C-terminal region of putative competence-damaged proteins from the cin operon InterPro:IPR008136%3B CinA_C. Pfam: PF02464%3B CinA cinA_cterm: competence/damage-inducible p No signal peptide. No transmembrane helices%3B~High confidence in function and specificity	gene	gene512	http://www.ncbi.nlm.nih.gov/gene/?term=azo0508
azo0509	azo0509		azo0509	545618	546100	-	putative phosphatidylglycerophosphatase A	Region start changed from 546007 to 546100 (93 bases)	gene	gene513	http://www.ncbi.nlm.nih.gov/gene/?term=azo0509
azo0510	azo0510	thiL	thiL	546104	547114	-	thiamine-phosphate kinase	Thiamine-phosphate kinase. catalytic activity: atp + thiamine phosphate %3D adp + thiamine diphosphate. pathway: thiamine biosynthesis.%3B~High confidence in function and specificity	gene	gene514	http://www.ncbi.nlm.nih.gov/gene/?term=azo0510
azo0511	azo0511		azo0511	547249	547530	-	UPF0125 family protein		gene	gene515	http://www.ncbi.nlm.nih.gov/gene/?term=azo0511
azo0512	azo0512	rnfE1	rnfE1	547551	548285	-	probable electron transport complex protein RnfE	Probable electron transport complex protein rnfE. Homology to rnfE of r. capsulata of 62%25 (sprot|RNFE_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. InterPro: RnfA-Nqr electron transport subunit ((IPR003667) Pfam: Rnf-Nqr-subunit%2C membran protein no signal peptide 5 TMHs%3B~High confidence in function and specificity	gene	gene516	http://www.ncbi.nlm.nih.gov/gene/?term=azo0512
azo0513	azo0513	rnfG1	rnfG1	548296	548922	-	probable electron transport complex protein RnfG	Probable electron transport complex protein rnfG. Homolog to rnfG of R. capsulata of 51%25 (sprot|RNFG_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene517	http://www.ncbi.nlm.nih.gov/gene/?term=azo0513
azo0514	azo0514	rnfD1	rnfD1	548939	549994	-	probable electron transport complex protein RnfD	Probable electron transport complex protein rnfD. Homology to rnfD of R. capsulatus of 42%25 (sprot|RNFD_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase (By similarity). InterPro: NQR2 and RnfD/E related proteins (IPR004338) Pfam: NQR2%2C RnfD%2C RnfE family no signal peptide probable 7 TMHs%3B~High confidence in function and specificity	gene	gene518	http://www.ncbi.nlm.nih.gov/gene/?term=azo0514
azo0515	azo0515	rnfC1	rnfC1	549991	551550	-	probable electronen transport complex protein RnfC	Probable electron transport complex protein RnfC. Homology to rnfC of R. capsulatus of 48%25 (sprot|RNFC_RHOCA) Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit (IPR001949)%3B 4Fe-4S ferredoxin%2C iron-sulfur bidning domain (IPR001450) Pfam: Respiratory-chain NADH dehydrogenase%3B 4Fe-4S binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene519	http://www.ncbi.nlm.nih.gov/gene/?term=azo0515
azo0516	azo0516	rnfB1	rnfB1	551561	552088	-	probable electron transport complex protein RnfB	Probable electron transport complex protein rnfB. Homology to rnfB of R. capsulatus of 48%25 (sprot|RNFB_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfC. Pfam: 4Fe-4S binding domain signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene520	http://www.ncbi.nlm.nih.gov/gene/?term=azo0516
azo0517	azo0517	rnfA1	rnfA1	552106	552687	-	probable electron transport complex protein RnfA	Probable electron transport complex protein RnfA. Homology to rnfA of R. capsultatus of 66%25 (RNFA_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Required for stable existence of rnfB and rnfC. InterPro: RnfA-Nqr electron transport subunit (IPR003667) Pfam: Rnf-Nqr subunit%2C membrane protein no signal peptide 6 TMHs%3B~High confidence in function and specificity	gene	gene521	http://www.ncbi.nlm.nih.gov/gene/?term=azo0517
azo0518	azo0518	nifL	nifL	553036	554607	+	nitrogen fixation regulatory protein	Nitrogen fixation regulatory protein (EC 2.7.3.-). Required for the inhibition of nifA activity in response to oxygen and low level of fixed nitrogen. Similar to SWISSPROT: sprot|NIFL_AZOVI (41%25 Azotobacter vinelandii%2Cnitrogen fixation regulatory protein (EC 2.7.3.-)%2C NifL) InterPro: IPR003661 His_kinA_N. The histidine kinase A (phosphoacceptor) N-terminal domain is a dimerisation and phosphoacceptor domain of histidine kinases. It has been found in bacterial sensor protein/histidine kinases. IPR000014 PAS. PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. IPR000700 PAS-assoc_C. IPR004358 Bact_sens_pr_C. IPR003594 ATPbind_ATPase. Pfam: PF00512 HisKA. PF00989 PAS. PF00785 PAC. TIGRFAM: TIGR00229 PAS domain S-box.%3B~High confidence in function and specificity	gene	gene522	http://www.ncbi.nlm.nih.gov/gene/?term=azo0518
azo0519	azo0519	nifA	nifA	554604	556157	+	nif-specific regulatory protein	Nif-specific regulatory protein. NIFA A TRANSCRIPTIONAL ACTIVATOR IS REQUIRED FOR ACTIVATION OF MOST NIF OPERONS WHICH ARE DIRECTLY INVOLVED IN NITROGEN FIXATION. NIFA INTERACTS WITH SIGMA-54. InterPro: Sigma-54 factor interaction domain%3B~High confidence in function and specificity	gene	gene523	http://www.ncbi.nlm.nih.gov/gene/?term=azo0519
azo0520	azo0520		azo0520	556202	557770	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Gmet02000900 of Geobacter metallireducens of 45%25 (gi|48846570|ref|ZP_00300831.1|(NBCI ENTREZ)). No domains predicted. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene524	http://www.ncbi.nlm.nih.gov/gene/?term=azo0520
azo0521	azo0521		azo0521	557796	558329	-	hypothetical secreted protein	Hypothetical secreted protein. No Hits in the PDB. No domains predicted. No TMHs. Signal peptide present.	gene	gene525	http://www.ncbi.nlm.nih.gov/gene/?term=azo0521
azo0522	azo0522	sodC	sodC	558326	558853	-	superoxide dismutase	Superoxide dismutase [Cu-Zn]precursor (EC 1.15.1.1)%2C sodC.Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May function against extracytoplasmic toxic oxygen species. 45%25 SOD_CU_ZN.Copper/Zinc superoxide dismutase. Pfam: PF00080%3B sodcu%3B 1. TIGR:CC1579. Signal peptide: present.%3B~High confidence in function and specificity	gene	gene526	http://www.ncbi.nlm.nih.gov/gene/?term=azo0522
azo0523	azo0523	nifB	nifB	559180	560676	+	nitrogen fixation protein	FeMo cofactor biosynthesis protein nifB. PROBABLY INVOLVED IN THE SYNTHESIS OF THE FE-MO COFACTOR.%3B~High confidence in function and specificity	gene	gene527	http://www.ncbi.nlm.nih.gov/gene/?term=azo0523
azo0524	azo0524		azo0524	560794	561084	+	conserved hypothetical ferredoxin	Conserved hypothetical ferredoxin. Homology to fdx of P. stuzeri of 57%25 (trembl|Q93JV5). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4FE-4S binding domain no signal peptide no TMHs%3B~Family membership	gene	gene528	http://www.ncbi.nlm.nih.gov/gene/?term=azo0524
azo0525	azo0525		azo0525	561181	561630	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of P. stuzeri of 49%25 (trembl|Q93JV4). Tigrfam: arsC: arsenate reductase. Pfam: ArsC family (PF03960) no signal peptide. no TMHs	gene	gene529	http://www.ncbi.nlm.nih.gov/gene/?term=azo0525
azo0526	azo0526	fprA	fprA	561627	562916	+	probable type A flavoprotein	Probable type A flavoprotein fprA . Homology to frpA of R. capsulatus of 58%25 (sprot|FPRA_RHOCA) Low-potential electron donor to a number of redox enzymes (Potential). InterPro: Metallo-beta-lactamase superfamily (IPR001279)%3B Flavodoxin (IPR001226) Pfam: Metallo-beta-lactamase superfamily%3B Flavodoxin no singal peptide no TMHs%3B~Family membership	gene	gene530	http://www.ncbi.nlm.nih.gov/gene/?term=azo0526
azo0527	azo0527	fdxC	fdxC	562926	563213	+	probable ferredoxin IV	Ferredoxin IV (FdIV) (Ferredoxin plant-type). Homology to fdxC of R. capsulatus of 62%25 (FER4_RHOCA). FERREDOXINS ARE IRON-SULFUR PROTEINS THAT TRANSFER ELECTRONS IN A WIDE VARIETY OF METABOLIC REACTIONS. THIS FERREDOXIN PROBABLY PARTICIPATES IN NITROGEN FIXATION. Pfam: 2Fe-2S iron-sulfur clauster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene531	http://www.ncbi.nlm.nih.gov/gene/?term=azo0527
azo0528	azo0528	fdxD	fdxD	563265	563615	+	Ferredoxin V	Ferredoxin V (FdV) (Ferredoxin plant-type). FERREDOXINS ARE IRON-SULFUR PROTEINS THAT TRANSFER ELECTRONS IN A WIDE VARIETY OF METABOLIC REACTIONS. THIS FERREDOXIN PROBABLY PARTICIPATES IN NITROGEN FIXATION. InterPro: Ferredoxin%3B~High confidence in function and specificity	gene	gene532	http://www.ncbi.nlm.nih.gov/gene/?term=azo0528
azo0529	azo0529	nifQ	nifQ	563680	564255	+	putative NifQ protein	Putative NifQ protein. Homology to nifQ of A. vinelandii of 33%25 (sprot|NIFQ_AZOVI(SRS) NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co)%2C which is an integral part of the active site of dinitrogenase [2]. The conserved C-terminal cysteine residues may be involved in metal binding. Pfam: NifQ no signal peptide no TMHs%3B~Family membership	gene	gene533	http://www.ncbi.nlm.nih.gov/gene/?term=azo0529
azo0530	azo0530	draG1	draG1	564301	565239	+	probable ADP-ribosyl-[dinitrogen reductase] hydrolase	Probable ADP-ribosyl-[dinitrogen reductase] hydrolase. Homology to draG of R. rubrum of 44%25 (sprot|DRAG_RHORU) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. The ADP-ribosyltransferase (DraT) transfers the ADP-ribose group from NAD to dinitrogenase reductase. The ADP-ribose group is removed through the action of the ADP-ribosylglycohydrolase (DraG). Pfam: ADP-ribosylglycohydrolase no signal peptide no TMHs	gene	gene534	http://www.ncbi.nlm.nih.gov/gene/?term=azo0530
azo0531	azo0531		azo0531	565267	566196	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA2778 of P.aeruginosa of 39%25 (trembl|Q9I065(SRS)) Has Signal Peptide. No TMH present. Has PF03412:Peptidase C39 family%3BLantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites%2C suggesting that a different processing enzyme is involved. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. The ABC transporter is the maturation protease and its proteolytic domain resides in the N-terminal part of the protein. This peptidase domain is found in a wide range of ABC transporters%2C however the presumed catalytic cysteine and histidine are not conserved in all members of this family.%3B~Conserved hypothetical protein	gene	gene535	http://www.ncbi.nlm.nih.gov/gene/?term=azo0531
azo0532	azo0532		azo0532	566198	566773	-	hypothetical membrane protein	Hypothetical membrane protein. No homology of the entire protein with the data bank. No domains predicted. No signal peptide. 1 TMH	gene	gene536	http://www.ncbi.nlm.nih.gov/gene/?term=azo0532
azo0533	azo0533	yjdF	yjdF	566665	567276	-	Conserved Hypothetical protein	Hypothetical protein yjdF%2C44%25 identity (56%25 similarity) to TrEMBL%3BQ8XDT2. SwissProt%3BP39270. Signal P reporting Signal peptide present. TMHMM2 reporting 3 TMH's present.	gene	gene537	http://www.ncbi.nlm.nih.gov/gene/?term=azo0533
azo0534	azo0534		azo0534	567329	568462	-	hypothetical membrane protein	Hypothetical membrane protein. TREMBL:Q83LX6: 27%25 identity%2C 42%25 similarity. similarity to E.coli ybeT. some%2Cto yeast skt5 and s.pombe spac24b11.10c InterPro%3B IPR006597%3B Sel_like. InterPro%3B IPR001440%3B TPR. InterPro%3B IPR008941%3B TPR-like Pfam:DsbD:Cytochrome C biogenesis protein trans SMART:SM00671%3B SEL1 Signal peptide present (Signal P) transmembrane helices: 5 (TMHMM predicted).%3B~Function unclear	gene	gene538	http://www.ncbi.nlm.nih.gov/gene/?term=azo0534
azo0535	azo0535	dcrH1	dcrH1	568662	569072	-	putative hemerythrin-like protein	DcrH: hemerythrin protein%2Cis a transmembrane methyl-accepting protein probably involved in bacterial chemotaxis. 36%25 Hemerythrin. Hemerythrin family non-heme Pfam:PF01814%3B Hemerythrin%3B 1.%3B~High confidence in function and specificity	gene	gene539	http://www.ncbi.nlm.nih.gov/gene/?term=azo0535
azo0536	azo0536		azo0536	569083	569934	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of Pseudomonas stutzeri of 52%25 (tremble:Q9EVM9). No domains predicted. No TMHs. No signal peptide.	gene	gene540	http://www.ncbi.nlm.nih.gov/gene/?term=azo0536
azo0537	azo0537	draT	draT	570131	570973	-	putative NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase	Putative NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase (EC 2.4.2.37) (ADP-ribosyltransferase). Homology to draT of R. rubrum of 39%25 (sprot|DRAT_RHORU(SRS) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. The ADP-ribosyltransferase transfers the ADP-ribose group from NAD to dinitrogenase reductase. The ADP-ribose group is removed through the action of the ADP-ribosylglycohydrolase (DraG). Pfam: DRAT no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene541	http://www.ncbi.nlm.nih.gov/gene/?term=azo0537
azo0538	azo0538	nifH	nifH	571215	572108	+	putative nitrogenase iron protein	88%25 NifH.IPR000392%3B NitrogenaseII. Pfam:PF00142%3B Fer4_NifH%3B 1. TIGRFAMs:TIGR02016%3B BchX%3B 1.TIGR01287%3B nifH%3B 1.%3B~High confidence in function and specificity	gene	gene542	http://www.ncbi.nlm.nih.gov/gene/?term=azo0538
azo0539	azo0539	nifD	nifD	572230	573705	+	nitrogenase molybdenum-iron protein alpha chain	Nitrogenase molybdenum-iron protein alpha chain (EC 1.18.6.1) (Nitrogenase component I) (Dinitrogenase). The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components: the iron protein and the molybdenum-iron protein.%3B~High confidence in function and specificity	gene	gene543	http://www.ncbi.nlm.nih.gov/gene/?term=azo0539
azo0540	azo0540	nifK	nifK	573809	575377	+	nitrogenase molybdenum-iron protein beta chain	Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1) (Nitrogenase component I) (Dinitrogenase). The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components: the iron protein and the molybdenum-iron protein. InterPro: Oxidoreductase nitrogenase component 1 araD: L-ribulose-5-phosphate 4-epimer%3B~High confidence in function and specificity	gene	gene544	http://www.ncbi.nlm.nih.gov/gene/?term=azo0540
azo0541	azo0541	nifT	nifT	575484	575708	+	nitrogen fixation protein [nifT]	Nitrogen fixation protein [nifT]%2C51%25 identity(72%25 Similarity) to SwissProt%3BP09427%2C TrEMBL%3BQ93JU8%2C57%25 identity. Has PF06988:NifT/FixU protein(IPR009727)%3BThis family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in K. pneumoniae has only a limited effect on nitrogen fixation. No Signal peptide or TMH present.%3B~High confidence in function and specificity	gene	gene545	http://www.ncbi.nlm.nih.gov/gene/?term=azo0541
azo0542	azo0542	fdxN	fdxN	575735	575938	+	FdxN protein	Ferredoxin. Pubilication: Egner et al.%2C 2001%2C J Bacteriol 183%2C 3752-3760 (trembl|Q9F0V6) Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding daimain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene546	http://www.ncbi.nlm.nih.gov/gene/?term=azo0542
azo0543	azo0543	nifY1	nifY1	576021	576743	+	NifY protein	NifY protein. Homology to nifY of Azoarcus sp. BH72 of 99%25 (gi|11493644|gb|AF200742.1|AF200742(NBCI ENTREZ)). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B%2C Y and X) proteins which are involved in the synthesis of an iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide predicted. No TMHs.%3B~Function unclear	gene	gene547	http://www.ncbi.nlm.nih.gov/gene/?term=azo0543
azo0544	azo0544		azo0544	576740	577012	+	hypothetical protein	ORF1%3B~Conserved hypothetical protein. Homology to orf1 of Azoarcus sp. BH72 of 100%25 (gi|11493650|gb|AAG35591.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene548	http://www.ncbi.nlm.nih.gov/gene/?term=azo0544
azo0545	azo0545		azo0545	577211	578842	+	putative methyl-accepting chemotaxis protein	Putative methyl-accepting chemotaxis protein%2CChmtaxis_transd. Pfam: PF00015%3B MCPsignal. SMART: SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Specificity unclear	gene	gene549	http://www.ncbi.nlm.nih.gov/gene/?term=azo0545
azo0546	azo0546	nifM	nifM	578928	579785	-	probable peptidylprolyl isomerase	Probable peptidylprolyl isomerase. Homology with nifM of A. chroococcum of 43%25 (sprot|NIFM_AZOCH) REQUIRED FOR THE ACTIVATION AND STABILIZATION OF THE IRON-COMPONENT (NIFH) OF NITROGENASE. PROBABLE PPIASE. InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase (IPR000297) Pfam: PPIC-type PPIASE domain no signal peptide no TMHs hydrog_prot: hydrogenase maturation pro%3B~High confidence in function and specificity	gene	gene550	http://www.ncbi.nlm.nih.gov/gene/?term=azo0546
azo0547	azo0547	nifZ	nifZ	579782	580273	-	Nitrogen Fixation protein	Nitrogen Fixation protein[nifZ]%2C 51%25 identity (67%25 similarity) SwissProt%3BP14889%2C66%25 similarity to SwissProt%3BP23124. Has PF04319:NifZ domain%3B(IPR007415)This short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins. No Signal Peptide Or TMH reported Present.%3B~High confidence in function and specificity	gene	gene551	http://www.ncbi.nlm.nih.gov/gene/?term=azo0547
azo0548	azo0548	nifW	nifW	580294	580614	-	nitrogen fixation protein NifW	Nitrogenase stabilizing/protective protein nifW%2C50%25 identity (68%25 similarity) to SwissProt%3BP14888.TrEMBL%3B Q6US88(60%25 similarity). Has PF03206:Nitrogen fixation protein NifW%3B(IPR004893)Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins%2C a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity%2C the exact roles played by many of these proteins in the functions of nitrogenase are unclear. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. No Signal Peptide or TMH present.%3B~High confidence in function and specificity	gene	gene552	http://www.ncbi.nlm.nih.gov/gene/?term=azo0548
azo0549	azo0549		azo0549	580638	581177	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to orf8 of Azotobacter vinelandii of 36%25 (tremble:Q44542). No domains predicted. No Signal peptide or TMH present.	gene	gene553	http://www.ncbi.nlm.nih.gov/gene/?term=azo0549
azo0550	azo0550	nifP	nifP	581177	582025	-	serine O-acetyltransferase	Serine acetyltransferase (EC 2.3.1.30). Homology to nifP of A. chrooccum of 58%25 (pir|D43706). PROBABLE SERINE ACETYLTRANSFERASE REQUIRED FOR OPTIMIZING THE EXPRESSION OF NITROGENASE ACTIVITY. NIFP MAY BE REQUIRED TO BOOST RATES OF SYNTHESIS OR INTRACELLULAR CONCENTRATIONS OF CYSTEINE OR METHIONINE. InterPro: Bacterial transferase hexapeptide repeat (IPR001451) no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene554	http://www.ncbi.nlm.nih.gov/gene/?term=azo0550
azo0551	azo0551	nifV	nifV	582028	583218	-	homocitrate synthase	Homocitrate synthase is involved in the biosynthesis of the iron-molybdenum cofactor of nitrogenase and catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate into homocitrate. Similar to sprot|NIFV_AZOVI (51%25) and to sprot|NIV1_ANASP (42%25). Pfam (PF00682): HMG-CoA Lyase-like family InterPro (PS00815): Alpha-isopropylmalate and homocitrate synthase%3B~High confidence in function and specificity	gene	gene555	http://www.ncbi.nlm.nih.gov/gene/?term=azo0551
azo0552	azo0552	nifS	nifS	583307	584530	-	cysteine desulphurase	Cysteine desulfurase(Nitrogenase metalloclusters biosynthesis protein nifS). Homology to nifS of A. chroococcum of 71%25 (sprot|NIFS_AZOCH) CATALYZES THE REMOVAL OF ELEMENTAL SULFUR ATOMS FROM CYSTEINE TO PRODUCE ALANINE. SEEMS TO PARTICIPATE IN THE BIOSYNTHESIS OF THE NITROGENASE METALLOCLUSTERS BY PROVIDING THE INORGANIC SULFUR REQUIRED FOR THE FE-S CORE FORMATION. Pfam: aminotransferase class-V no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene556	http://www.ncbi.nlm.nih.gov/gene/?term=azo0552
azo0553	azo0553	nifU	nifU	584713	585603	-	probable nitrogen fixation protein NifU	Probable nitrogen fixation protein NifU. Homology to nifU of A. vinelandii of 67%25 (sprot|NIFU_AZOVI). INVOLVED IN THE FORMATION OR REPAIR OF [FE-S] CLUSTERS PRESENT IN IRON-SULFUR PROTEINS. Pfam: NifU-like N-terminal domain%2C NifU-like domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene557	http://www.ncbi.nlm.nih.gov/gene/?term=azo0553
azo0554	azo0554	hesB	hesB	585625	585948	-	HesB/yadR/yfhF family protein	HesB/yadR/yfhF family protein%2C 45%25 identity to TrEMBL%3BQ9KJL2%2CQ6HRJ0. SwissProt%3BP37026(41%25 identity) Has PF01521%2C HesB-like domain%3BIPR000361%2C HesB_yadR_yfhF%3BThis family includes HesB which may be involved in nitrogen fixation%3B the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which P46847 and NP31774 also contains NifU-like domains NifU which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli%2C the hesB-like gene iscN is required for nitrogen fixation.%3B~High confidence in function and specificity	gene	gene558	http://www.ncbi.nlm.nih.gov/gene/?term=azo0554
azo0555	azo0555		azo0555	586209	586601	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03002610 of Dechloromonas aromatica of 39%25 (gi|41724013|ref|ZP_00150903.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene559	http://www.ncbi.nlm.nih.gov/gene/?term=azo0555
azo0556	azo0556	fdxB	fdxB	586611	586898	-	probable ferredoxin	Probable ferredoxin. Homology to fdxB of R. capsulatus of 45%25 (sprot|FER3_RHOCA) Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~Family membership	gene	gene560	http://www.ncbi.nlm.nih.gov/gene/?term=azo0556
azo0557	azo0557		azo0557	587039	587254	-	conserved hypothetical protein	Conserved hypothetical protein Shows similarity to hypothetical 7.7 kDa protein in fixX 3'region (ORF1) of Azorhizobium caulinodans. TIGR00162: conserved hypothetical protein	gene	gene561	http://www.ncbi.nlm.nih.gov/gene/?term=azo0557
azo0558	azo0558		azo0558	587265	587750	-	conserved hypothetical protein	Conserved hypothetical protein(Has probable Nif-associated protein function)41%25 identity(62%25 similarity) to TrEMBL%3BQ9KJL5. Has PF03270(IPR004952):Protein of unknown function%2C DUF269%3BMembers of this family may be involved in nitrogen fixation%2C since they are found within nitrogen fixation operons. NO Signal Peptide or TMH present.%3B~Family membership	gene	gene562	http://www.ncbi.nlm.nih.gov/gene/?term=azo0558
azo0559	azo0559		azo0559	587769	588176	-	hypothetical sigma-E factor regulatory protein	Hypothetical sigma-E factor regulatory protein%2Cbest similarity to SWISSPROT: sprot|Y850_HAEIN (Haemophilus influenzae%2C hypothetical protein hi0850) / sprot|RSEC_ECOLI (23%25 Escherichia coli%2C sigma-e factor regulatory protein RseC). TMHMM reporting 2 transmembrane helices.	gene	gene563	http://www.ncbi.nlm.nih.gov/gene/?term=azo0559
azo0560	azo0560	nifX	nifX	588173	588700	-	conserved hypothetical NifX protein	Conserved hypothetical NifX protein. Homology to nifX of Azotobacter vinelandii of 47%25 (gi|128328|sp|P14887|NIFX_AZOVI(NBCI ENTREZ)). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B%2C Y and X) proteins which are involved in the synthesis of an iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide predicted. No TMHs.%3B~Conserved hypothetical protein	gene	gene564	http://www.ncbi.nlm.nih.gov/gene/?term=azo0560
azo0561	azo0561	nifN	nifN	588618	590012	-	probable nitrogenase iron-molybdenum cofactor biosynthesis protein NifN	Probable nitrogenase iron-molybdenum cofactor biosynthesis protein NifN. Homology to nifN of A. vielandii of 60%25 (sprot|NIFN_AZOVI). This protein may play a role in the biosynthesis of the prosthetic group of nitrogenase (FeMo cofactor). InterPro: Oxidoreductase nitrogenase component 1 (IPR000510) Pfam: Nitrogenease component 1 type oxidoreductase probable signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene565	http://www.ncbi.nlm.nih.gov/gene/?term=azo0561
azo0562	azo0562	nifE	nifE	590023	591525	-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE. Homology to nifE of A. vielandii of 70%25 (sprot|NIFE_AZOVI). This protein may play a role in the biosynthesis of the prosthetic group of nitrogenase (FeMo cofactor). InterPro: Oxidoreductase nitrogenase component 1 (IPR000510) Pfam: Nitrogenease component 1 type oxidoreductase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene566	http://www.ncbi.nlm.nih.gov/gene/?term=azo0562
azo0563	azo0563		azo0563	591714	592715	-	probale Hypothetical protein	Probale Hypothetical protein. Very Weak homology spanning the entire length of protein in the data base. No Significant domains%2CFeatures%2CTMH's or Signal Peptide present.%3B~Function unclear	gene	gene567	http://www.ncbi.nlm.nih.gov/gene/?term=azo0563
azo0564	azo0564		azo0564	592764	593639	-	conserved hypothetical protein	Conserved hypothetical protein. Has PF05484:LRV protein FeS4 cluster(IPR008665)%3BThis Iron sulphur cluster is found at the N-terminus of some proteins containing LRV repeats. Has 6%2C(IPR004830) PF01816:Leucine rich repeat variant%3BThe function of this repeat is unknown. It has an unusual structure of two helices. One is an alpha helix%2Cthe other is the much rarer 3-10 helix.%3B~Function unclear	gene	gene568	http://www.ncbi.nlm.nih.gov/gene/?term=azo0564
azo0565	azo0565	morA	morA	593892	597104	+	GGDEF/EAL/PAS/PAC/GAF-domain containing protein	GGDEF/EAL/PAS/PAC/GAF-domain containing protein	gene	gene569	http://www.ncbi.nlm.nih.gov/gene/?term=azo0565
azo0566	azo0566		azo0566	597165	597449	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH	gene	gene570	http://www.ncbi.nlm.nih.gov/gene/?term=azo0566
azo0567	azo0567		azo0567	597475	598143	-	conserved hypothetical protein	Similar to TREMBL:Q82SF8 (45%25 identity)%3B TREMBL:Q7P0W9 (43%25 identity)%3B TREMBL:Q8XV73 (40%25 identity).	gene	gene571	http://www.ncbi.nlm.nih.gov/gene/?term=azo0567
azo0568	azo0568	vsrA	vsrA	598310	599704	+	putative sensory box histidine kinase	Putative sensory box histidine kinase%2C%3B~High confidence in function and specificity	gene	gene572	http://www.ncbi.nlm.nih.gov/gene/?term=azo0568
azo0569	azo0569	vsrD1	vsrD1	599710	600345	-	DNA-binding response regulator	DNA-binding response regulator%2C%3B~High confidence in function and specificity	gene	gene573	http://www.ncbi.nlm.nih.gov/gene/?term=azo0569
azo0570	azo0570		azo0570	600348	601409	-	conserved hypothetical protein	Similar to TREMBL:Q89KB0 (34%25 identity)%3B TREMBL:Q8XXG5 (34%25 identity).	gene	gene574	http://www.ncbi.nlm.nih.gov/gene/?term=azo0570
azo0571	azo0571	ruvC	ruvC	601871	602422	-	crossover junction endodeoxyribonuclease	Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC). Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5terminal phosphate and a 3terminal hydroxyl group (By similarity).%3B~High confidence in function and specificity	gene	gene576	http://www.ncbi.nlm.nih.gov/gene/?term=azo0571
azo0572	azo0572	ybjQ	ybjQ	602457	602777	-	conserved hypothetical protein	Conserved hypothetical protein%2C ybjQ%2C 65%25 identity to SwissProt%3BP75819. SwiisProt%3BQ8XGV2(66%25 identity). TrEMBL%3BQ83LS2( 65%25 identity) Has PF01906%2C Domain of unknown function DUF74%3BIPR002765%3B Members of this protein family have no known function. The domain is about 100 amino acids long and found in prokaryotes.%3B~High confidence in function and specificity	gene	gene577	http://www.ncbi.nlm.nih.gov/gene/?term=azo0572
azo0573	azo0573		azo0573	602808	603686	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Hamology to PA3358 of P. aeruginosa of 56%25 InterPro: Integral membrane protein DUF6 Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter Pfam: Integral membrane protein DUF6 no signal peptide probable 10 TMHs%3B~Conserved hypothetical protein	gene	gene578	http://www.ncbi.nlm.nih.gov/gene/?term=azo0573
azo0574	azo0574	yebC	yebC	603781	604506	-	conserved hypothetical protein	Conserved hypothetical protein%2CyebC%2C48%25 identity (63%25 similarity) to SwissProt%3BQ8FGR1%2CP24237%2CQ8XFD4. TrEMBL%3BQ9S4S9. Has PF01709%2C Domain of unknown function DUF28%3BIPR002876%3B This domain is found in bacterial and yeast proteins it compromises the entire length or central region of most of the proteins in the family%2C all of which are hypothetical with no known function. The average length of this domain is approximately 230 amino acids long.%3B~High confidence in function and specificity	gene	gene579	http://www.ncbi.nlm.nih.gov/gene/?term=azo0574
azo0575	azo0575		azo0575	604637	605281	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide Present.	gene	gene580	http://www.ncbi.nlm.nih.gov/gene/?term=azo0575
azo0576	azo0576		azo0576	605320	606831	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to yjgR of E. coli of 66%25 (sprot|YJGR_ECOLI). no signal peptide no TMHs%3B~Family membership	gene	gene581	http://www.ncbi.nlm.nih.gov/gene/?term=azo0576
azo0577	azo0577	gstR2	gstR2	606869	607759	-	probable transcriptional regulator%2C LysR family	Probable transcriptional regulator%2C LysR family%2C%3B~Family membership	gene	gene582	http://www.ncbi.nlm.nih.gov/gene/?term=azo0577
azo0578	azo0578	emrY	emrY	607889	609352	+	multidrug resistence transmembrane protein	Multidrug resistance protein B homolog. TRANSLOCASE THAT CONFERS RESISTANCE TO SUBSTANCES OF HIGH HYDROPHOBICITY (BY SIMILARITY). Presence of signal peptide and 14 transmembrane helices. Presence of DUF domains%2CCbiM%2C and bacterial cytochrome ubiquinol oxidase like domains efflux_EmrB: drug resistance transport%3B~High confidence in function and specificity	gene	gene583	http://www.ncbi.nlm.nih.gov/gene/?term=azo0578
azo0579	azo0579		azo0579	609429	610385	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RSc2187 of R. solanacerarum of 44%25. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter Pfam: Intergral membrane protein DUF6 no signal peptide probable 6 TMHs%3B~Conserved hypothetical protein	gene	gene584	http://www.ncbi.nlm.nih.gov/gene/?term=azo0579
azo0580	azo0580		azo0580	610477	612138	+	putative methyl-accepting chemotaxis transducer	Putative methyl-accepting chemotaxis transducer%2CChmtaxis_transd. Pfam: PF00015%3B MCPsignal. SMART: SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices. Methyl-accepting chemotaxis serine transducer. CHEMOTACTIC-SIGNAL TRANSDUCERS RESPOND TO CHANGES IN THE CONCENTRATION OF ATTRACTANTS AND REPELLENTS IN THE ENVIRONMENT TRANSDUCE A SIGNAL FROM THE OUTSIDE TO THE INSIDE OF THE CELL AND FACILITATE SENSORY ADAPTATION THROUGH THE VARIATION OF THE LEVEL OF METHYLATION. ATTRACTANTS INCREASE THE LEVEL OF METHYLATION WHILE REPELLENTS DECREASE THE LEVEL OF METHYLATION THE METHYL GROUPS ARE ADDED BY THE METHYLTRANSFERASE CHER AND REMOVED BY THE METHYLESTERASE CHEB. recN: DNA repair protein RecN%3B~Specificity unclear	gene	gene585	http://www.ncbi.nlm.nih.gov/gene/?term=azo0580
azo0581	azo0581	araJ	araJ	612146	613330	-	putative transmembrane efflux precursor protein	May be involved in either the transport or processing of arabinose polymers.Belongs to the major facilitator superfamily. 36%25 MFS.IPR005828%3B Sub_transporter. TMhelix:12.%3B~High confidence in function and specificity	gene	gene586	http://www.ncbi.nlm.nih.gov/gene/?term=azo0581
azo0582	azo0582		azo0582	613443	614654	-	putative permeases of the major facilitator superfamily	Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 25%25 MFS.IPR005828%3B Sub_transporter.IPR005829%3B Sug_transporter.InterPro: General substrate transporters Pfam:PF00083%3B sugar_tr%3B 1. TMHelix: 12%3B~Specificity unclear	gene	gene587	http://www.ncbi.nlm.nih.gov/gene/?term=azo0582
azo0583	azo0583	lysR	lysR	614751	615716	+	putative transcriptional regulator%2C LysR family	Putative transcriptional regulator%2C LysR family%2C%3B~Family membership	gene	gene588	http://www.ncbi.nlm.nih.gov/gene/?term=azo0583
azo0584	azo0584	metF	metF	615741	616574	-	5%2C10-methylenetetrahydrofolate reductase (FADH2	510-methylenetetrahydrofolate reductase InterPro: Methylenetetrahydrofolate reductase fadh2: 510-methylenetetrahydrofolate reductase%3B~High confidence in function and specificity	gene	gene589	http://www.ncbi.nlm.nih.gov/gene/?term=azo0584
azo0585	azo0585	tlyA	tlyA	616561	617238	-	conserved hypothetical protein	Probable hemolysin.46%25 identity to TrEMBL%3BQ7NQ39. Has PF01728%2C FtsJ-like methyltransferase%3B IPR002877%2CRrmJFtsJ_mtfrase%3B This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase%2C but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.%3B~High confidence in function and specificity	gene	gene590	http://www.ncbi.nlm.nih.gov/gene/?term=azo0585
azo0586	azo0586		azo0586	617454	617696	-	Hypothetical protein	Hypothetical protein. Weak Homology with hits in the Database. No domains%2C repeats%2C motifs or features could be predicted above threshold value.	gene	gene591	http://www.ncbi.nlm.nih.gov/gene/?term=azo0586
azo0587	azo0587	acyH	acyH	617790	619199	-	Adenosylhomocysteinase	Adenosylhomocysteinase. InterPro: S-adenosyl-L-homocysteine hydrolase ahcY: adenosylhomocysteinase%3B~High confidence in function and specificity	gene	gene592	http://www.ncbi.nlm.nih.gov/gene/?term=azo0587
azo0588	azo0588		azo0588	619475	620047	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA0776 of Pseudomonas aeruginosa of 30%25 (trembl|Q9I5G2(SRS)) No domains predicted Signal Peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene593	http://www.ncbi.nlm.nih.gov/gene/?term=azo0588
azo0589	azo0589	metK	metK	620087	621253	-	methionine adenosyltransferase	S-adenosylmethionine synthetase (EC 2.5.1.6) (AdoMet synthetase) (MAT). Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity). InterPro: S-adenosylmethionine synthetase%3B~High confidence in function and specificity	gene	gene594	http://www.ncbi.nlm.nih.gov/gene/?term=azo0589
azo0590	azo0590	htrB	htrB	621534	622355	+	putative lipid A biosynthesis lauroyl acyltransferase	Putative lipid A biosynthesis lauroyl acyltransferase. Homology to htrB of E. coli of 27%25 (sprot|HTRB_ECOLI) ACYLATES THE INTERMEDIATE (KDO)2-LIPID IVA TO FORM (KDO)2-(LAUROYL)-LIPID IVA. HAS 10 FOLD SELECTIVITY FOR LAUROYL- ACP OVER MYRISTOYL-ACP. Pfam: Bacterial lipid A biosynthesis acyltransferase no singal peptide no TMHs%3B~High confidence in function and specificity	gene	gene595	http://www.ncbi.nlm.nih.gov/gene/?term=azo0590
azo0591	azo0591	msbBa	msbBa	622384	623160	+	putative lipid A biosynthesis acyltransferase%2Ctruncated	Putative Lipid A biosynthesis acyltransferase protein Homology to msbB of of E. coli of 27%25 (AAA24181). Homology only with the N-terminus. no signal peptide. 1 TMH. Tigrfam: lipid_A_htrB%2C lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. Pfam: Lip_A_acyltrans%2CBacterial lipid A biosynthesis acyltransferase.%3B~Family membership	gene	gene596	http://www.ncbi.nlm.nih.gov/gene/?term=azo0591
azo0592	azo0592	msbBb	msbBb	623157	623261	+	putative lipid A biosynthesis acyltransferase%2Ctruncated	Putative Lipid A biosynthesis acyltransferase protein Homology to.msbB of of E. coli of 27%25 (AAA24181). Homology only with the N-terminus. no signal peptide. 1 TMH. Tigrfam: lipid_A_htrB%2C lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. Pfam: Lip_A_acyltrans%2CBacterial lipid A biosynthesis acyltransferase.%3B~Function unclear	gene	gene597	http://www.ncbi.nlm.nih.gov/gene/?term=azo0592
azo0593	azo0593		azo0593	623255	623521	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Daro03000819 of Dechloromonas aromatica of 32%25 (gi|46140899|ref|ZP_00152594.2|(NBCI ENTREZ)). No domains predicted. signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene598	http://www.ncbi.nlm.nih.gov/gene/?term=azo0593
azo0594	azo0594	dapF	dapF	623683	624516	+	DapF protein	Diaminopimelate epimerase catalyzes the isomeriazation of L%2CL- to D%2CL-meso-diaminopimelate in the biosynthetic pathway leading from aspartate to lysine. This enzyme is a protein of about 30 kDa. Two conserved cysteines seem to function as the acid and base in the catalytic mechanism. Similar to TREMBL:Q82U84 (58%25). Pfam (PF01678): Diaminopimelate epimerase TIGRfam (TIGR00652): Diaminopimelate epimerase%3B~High confidence in function and specificity	gene	gene599	http://www.ncbi.nlm.nih.gov/gene/?term=azo0594
azo0595	azo0595		azo0595	624557	625210	+	3'%2C5'-cyclic-nucleotide phosphodiesterase	Conserved hypothetical protein. Coils2 Program reporting presence of 1 Coiled-Coil. Has SMART%3BSM00065%2CGAF domain%3BThis domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3'%2C5'-cyclic phosphodiesterase catalyses the conversion of guanosine 3'%2C5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light%2C the PR form that absorbs maximally in the red region of the spectrum%2C and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA%2C a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.%3B~Specificity unclear	gene	gene600	http://www.ncbi.nlm.nih.gov/gene/?term=azo0595
azo0596	azo0596	xerC	xerC	625290	626201	+	site-specific recombinase	Tyrosine recombinase xerC. Site-specific tyrosine recombinase which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerD binding sites by a short central region forming the heterotetrameric xerC-xerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids at ColE1 xer (or cer) and pSC101 (or psi) sites. In the complex xerC specifically exchanges the top DNA strands (By similarity).%3B~High confidence in function and specificity	gene	gene601	http://www.ncbi.nlm.nih.gov/gene/?term=azo0596
azo0597	azo0597		azo0597	626345	626848	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA3954 of Azoarcus sp. EbN1 of 56%25 (gnl|keqq|eba:ebA3954(KEGG)). No domains predictied. No signal peptide. No TMHs. helix-turn-helix present.	gene	gene602	http://www.ncbi.nlm.nih.gov/gene/?term=azo0597
azo0598	azo0598		azo0598	626914	628101	+	probable SAM dependent methyl transferase	Hypothetical protein yccW TREMBL:Q8Y3C9: 52%25 identity%2C 62%25 similarity. InterPro%3B IPR002478%3B PUA. InterPro%3B IPR000051%3B SAM_bind. Pfam:Met_1:Met-10+ like-protein SMART%3B SM00359 TIGR00095: conserved hypothetical protein No transmembrane helices%3B~High confidence in function and specificity	gene	gene603	http://www.ncbi.nlm.nih.gov/gene/?term=azo0598
azo0599	azo0599		azo0599	628098	628448	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA3957 of Azoarcus sp. EbN1 of 38%25 (gnl|keqq|eba:ebA3957(KEGG)). No domains predicted. signal peptide. 2 TMHs%3B~Conserved hypothetical protein	gene	gene604	http://www.ncbi.nlm.nih.gov/gene/?term=azo0599
azo0600	azo0600		azo0600	628448	628666	-	hypothetical secreted protein	Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. no TMHs	gene	gene605	http://www.ncbi.nlm.nih.gov/gene/?term=azo0600
azo0601	azo0601	ruvB	ruvB	628671	629729	-	holliday junction DNA helicase	Holliday junction DNA helicase ruvB. The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday junction migration by localized denaturation and reanneling (By similarity). InterPro: Holliday junction DNA helicase RuvB%3B~High confidence in function and specificity	gene	gene606	http://www.ncbi.nlm.nih.gov/gene/?term=azo0601
azo0602	azo0602	ruvA	ruvA	629785	630384	-	holliday junction DNA helicase	Holliday junction DNA helicase ruvA. The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday junction migration by localized denaturation and reanneling. RuvA stimulates in the presence of DNA the weak ATPase activity of ruvB (By similarity). InterPro: Bacterial DNA recombination protein RuvA%3B~High confidence in function and specificity	gene	gene607	http://www.ncbi.nlm.nih.gov/gene/?term=azo0602
azo0603	azo0603		azo0603	630563	631267	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to BP3397 of B. pertussis of 41%25 (bpe:BP3397(KEGG)). Tigrfam: azlC: azlC protein (azlC). 6 TMHs no signal peptide%3B~Conserved hypothetical protein	gene	gene608	http://www.ncbi.nlm.nih.gov/gene/?term=azo0603
azo0604	azo0604		azo0604	631264	631590	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS04896 of Ralstonia solanacearum o 43%25 (trembl|Q8Y1W8) Has PF06063%2C Domain of unknown function (DUF931)%3BIPR010337%3BFamily of transmembrane proteins with undetermined function. singal peptide. 2 THMs%3B~Conserved hypothetical protein	gene	gene609	http://www.ncbi.nlm.nih.gov/gene/?term=azo0604
azo0605	azo0605		azo0605	631597	631851	-	conserved hypothetical protein	Hypothetical protein. Homology to Daro03002672 of Dechloromonas aromatica of 51%25 (gi|41723577|ref|ZP_00150487.1|(NBCI ENTREZ)). Has PF04023%2C FeoA domain%3BIPR007167%3B This family includes FeoA a small protein%2C probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese. no signal peptide. no TMHs	gene	gene610	http://www.ncbi.nlm.nih.gov/gene/?term=azo0605
azo0606	azo0606	feoB	feoB	631860	633851	-	putative ferrous iron transport protein B	Ferrous iron transport protein B%2C FeoB.Probable GTP-driven transporter of ferrous ion.Invovled in iron II uptake. 29%25 FeoB.IPR005289%3B GTP-bindding_dom.IPR005225%3B Small_GTP. Pfam:PF02421%3B FeoB%3B 1.TIGRFAMs TIGR00437%3B feoB%3B 1.TIGR00650%3B MG442%3B 1. TIGR00231%3B small_GTP%3B 1. TMHelix:12 Siganl pepetide present.%3B~High confidence in function and specificity	gene	gene611	http://www.ncbi.nlm.nih.gov/gene/?term=azo0606
azo0607	azo0607		azo0607	634049	636247	+	putative TonB-dependent receptor	Outer membrane TonB-dependent%2C hydroxamate-type ferrisiderophore receptor. Probably involved in iron transport. 30%25 TONB_C.IPR000531%3B TonB_receptor.IPR010105%3B TonB_siderophor. InterPro: TonB-dependent receptor protein Pfam:PF00593%3B TonB_dep_Rec%3B 1. TIGRFAMs:TIGR01783%3B TonB-siderophor%3B 1. Signal peptide present.%3B~High confidence in function and specificity	gene	gene612	http://www.ncbi.nlm.nih.gov/gene/?term=azo0607
azo0608	azo0608	ybiX	ybiX	636324	637007	+	putative PKHD-type hydroxylase	Putative PKHD-type hydroxylase protein%2C 69%25 Identity(82%25 simialrity) to SwissProt%3BP59727%2CQ8FJM69%2C (48%25 identity) Has SMART%3BSM00702%2C P4Hc%2CProlyl 4-hydroxylase alpha subunit homologues: IPR006620%3B Pro_4_hyd_alph%3B Mammalian enzymes catalyse hydroxylation of collagen%2C for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases%2C requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Has PF03171%2C2OG-Fe(II) oxygenase superfamily%3BIPR005123%3BThis family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily. This family includes the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 <%3D> procollagen trans- 4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site. The family also includes lysyl hydrolases%2Cisopenicillin synthases and AlkB.%3B~High confidence in function and specificity	gene	gene613	http://www.ncbi.nlm.nih.gov/gene/?term=azo0608
azo0609	azo0609	gox	gox	637000	638121	+	probable (S)-2-hydroxy-acid oxidase	Probable (S)-2-hydroxy-acid oxidase. Homology to gox of S. oleracea (spinach) of 42%25 (sprot|GOX_SPIOL). CATALYTIC ACTIVITY: (S)-2-hydroxy-acid + O(2) %3D 2-oxo acid + H(2)O(2). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262)%3B Protein binding FMN and related compounds core region (IPR003009) Pfam: FMN-dependent dehydrogenase no signal peptide no TMHs guaA_Cterm: GMP synthase C-terminal d%3B~Family membership	gene	gene614	http://www.ncbi.nlm.nih.gov/gene/?term=azo0609
azo0610	azo0610	oprM2	oprM2	638132	639553	-	putative outer membrane efflux protein	Putative outer membrane efflux protein. Homology to orpM in P. aeruginosa of 36%25. Component of an efflux system that confers multidrug or multible antibiotic resistence. Interpro: Outer membran efflux protein Pfam: Outer membran efflux protein signal peptide no TMHs%3B~Family membership	gene	gene615	http://www.ncbi.nlm.nih.gov/gene/?term=azo0610
azo0611	azo0611	macB	macB	639568	641538	-	ATP-binding/permease fusion ABC transporter	Putative efflux transporter for macrolide antibiotics%2C TREMBL:Q92NU9 (57%25 identity)%3B TREMBL:Q884D4 (49%25 identity). Pfam (PF00005): ABC transporter. Pfam (DUF214): Predicted permease. TMHMM reporting four transmembrane helices. TC (3.A.1.122): The Macrolide Exporter Family.%3B~Specificity unclear	gene	gene616	http://www.ncbi.nlm.nih.gov/gene/?term=azo0611
azo0612	azo0612	macA	macA	641535	642686	-	periplasmic component of efflux system	Macrolide-specific efflux protein macA precursor. Efflux transporter for macrolide antibiotics (By similarity). Membrane Fusion Protein (MFP) family.%3B~High confidence in function and specificity	gene	gene617	http://www.ncbi.nlm.nih.gov/gene/?term=azo0612
azo0613	azo0613	exbD3	exbD3	642997	643413	-	probable biopolymer transport protein ExbD	Probable fiopolymer transport protein ExbD. Homology to exbD1 of X. campestris of 43%25. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~High confidence in function and specificity	gene	gene618	http://www.ncbi.nlm.nih.gov/gene/?term=azo0613
azo0614	azo0614	exbB2	exbB2	643413	644174	-	probable biopolymer transport protein ExbB	Probable biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 50%25 ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: MotA/TolQ/ExbB proton channel family Pfam: MotA/TolQ/ExbB proton channel family no signal peptide no TMHs%3B~Family membership	gene	gene619	http://www.ncbi.nlm.nih.gov/gene/?term=azo0614
azo0615	azo0615	tonB1	tonB1	644177	644926	-	putative TonB protein	Putative TonB protein. Homology to tonb2 of P. aeruginosa of 39%25 (TREMBL:Q9RMT3). To complete transport of bound iron across the inner membrane%2C a second receptor complex is needed. The major component of this is tonB%2C a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors Pfam: Gram-negative bacterial TonB protein no signal peptide 1 TMH%3B~Function unclear	gene	gene620	http://www.ncbi.nlm.nih.gov/gene/?term=azo0615
azo0616	azo0616	bfr2	bfr2	645213	645689	-	putative bacterioferritin	Bacterioferritin (BFR)(Cytochrome B-1)(Cytochrome B-557).May perform analogous functions in iron detoxification and storage to that of animal ferritins.Key role in iron homeostasis. 71%25 Bacterioferritin.IPR008331%3B Ferritin_Dps.IPR009040%3B Ferritin_like. Pfam:PF00210%3B ferritin%3B 1. TIGRFAMs:TIGR00754%3B bfr%3B 1.%3B~High confidence in function and specificity	gene	gene621	http://www.ncbi.nlm.nih.gov/gene/?term=azo0616
azo0617	azo0617	bfd	bfd	645686	645928	-	conserved hypothetical bacterioferritin-associated ferredoxin	Bacterioferritin-associated ferredoxin. Homology to psto4159 of P. syringae of 33%25 (trembl|Q87XL9). SEEMS TO ASSOCIATE WITH BFR%3B COULD BE A GENERAL REDOX AND/OR REGULATORY COMPONENT PARTICIPATING IN THE IRON STORAGE MOBILIZATION FUNCTIONS OF BFR. COULD PARTICIPATE IN THE RELEASE OR THE DELIVERY OF IRON FROM/TO BACTERIOFERRITIN (OR OTHER IRON COMPLEXES). Pfam: BFD-like [2Fe-2S] binding domain no signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene622	http://www.ncbi.nlm.nih.gov/gene/?term=azo0617
azo0618	azo0618		azo0618	645969	646178	-	putative hemin uptake protein	47%25 DUF1008. Pfam:PF06228%3B DUF1008%3B 1.%3B~High confidence in function and specificity	gene	gene623	http://www.ncbi.nlm.nih.gov/gene/?term=azo0618
azo0619	azo0619		azo0619	646348	647070	+	conserved hypothetical protein	Similar to TREMBL:Q8Y2F3 (57%25 identity)%3B TREMBL:Q7VVV4 (55%25 identity)%3B TREMBL:Q9I111 (53%25 identity). Pfam (FAA_hydrolase): Fumarylacetoacetate (FAA) hydrolase family.	gene	gene624	http://www.ncbi.nlm.nih.gov/gene/?term=azo0619
azo0620	azo0620		azo0620	647080	647529	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to an orf of G. sulfurreducens of 34%25 (tremblnew|AAR35905(SRS)). No domains predicted. Signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene625	http://www.ncbi.nlm.nih.gov/gene/?term=azo0620
azo0621	azo0621		azo0621	647516	648724	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA1833 of Azoarcus sp. EbN1 of 48%25 (gnl|keqq|eba:ebA1833(KEGG)). No domains predicted. Signal peptide Present. No TMH present.%3B~Conserved hypothetical protein	gene	gene626	http://www.ncbi.nlm.nih.gov/gene/?term=azo0621
azo0622	azo0622		azo0622	648721	651168	-	conserved hypothetical signaling protein	Conserved hypothetical signaling protein. Homology to ebA1830 of Azoarcus sp. EbN1 of 63%25 (gnl|keqq|eba:ebA1830(KEGG)). Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF00563 EAL domain. PF00672 HAMP. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain. TMHMM reporting 2 transmembrane helices of which one is in the signal peptide. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene627	http://www.ncbi.nlm.nih.gov/gene/?term=azo0622
azo0623	azo0623	matA	matA	651269	652651	-	putative malonyl-CoA decarboxylase	Catalyzes the conversion of malonyl-CoA to acetyl-CoA. In the fatty acid biosynthesis MCD selectively removes malonyl-CoA and thus assures that methyl-malonyl-CoA is the only chain elongating substrate for fatty acid synthase and that fatty acids with multiple methyl side chains are produced. 40%25 Malonyl_CoA_deC. Pfam:PF05292%3B MCD%3B 1.%3B~High confidence in function and specificity	gene	gene628	http://www.ncbi.nlm.nih.gov/gene/?term=azo0623
azo0624	azo0624		azo0624	652780	653454	+	PAS/PAC-domain containing protein	PAS/PAC-domain containing protein%2C shows good similarity only to parts of other proteins (mostly sensor kinases). This suggests that there normally should be a kinase domain and therefore the protein is not complete. Also the downstream response regulator gives a hint for this suggestion. InterPro: IPR000014 PAS_domain. IPR001610 PAC motif. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.	gene	gene629	http://www.ncbi.nlm.nih.gov/gene/?term=azo0624
azo0625	azo0625		azo0625	653521	653943	+	hypothetical two-component system response regulator	Hypothetical two-component system response regulator%2C very low similarity to a part of YehT: SWISSPROT: sprot|YEHT_ECOLI (16%25 Escherichia coli%2C YehT) Pfam: PF00072 Response_reg.	gene	gene630	http://www.ncbi.nlm.nih.gov/gene/?term=azo0625
azo0626	azo0626	lgt	lgt	653963	654760	-	probable prolipoprotein diacylglyceryl transferase	Probable prolipoprotein diacylglyceryl transferase. Homology to lgt of E. coli of 47%25 (sprot|LGT_ECOLI) TRANSFERS THE N-ACYL DIGLYCERIDE GROUP ON WHAT WILL BECOME THE N-TERMINAL CYSTEINE OF MEMBRANE LIPOPROTEINS. InterPro: Prolipoprotein diacylglyceryl transferase (IPR001640) Tigrfam: lgt: prolipoprotein diacylglyceryl transferase Pfam: Prolipoprotein diacylglyceryl transferase no signal peptide 7 TMHs%3B~High confidence in function and specificity	gene	gene631	http://www.ncbi.nlm.nih.gov/gene/?term=azo0626
azo0627	azo0627	yceH	yceH	654774	655454	-	conserved hypothetical protein	Conserved hypothetical protein%2C 47%25 identity (59%25 similarity)to TrEMBL%3BQ8FIR0.TrEMBL%3BQ83LI7 Has PF04337%2CProtein of unknown function%2C DUF480%3BIPR007432%3BThis family consists of several proteins of uncharacterised function. Coils2 program reporting presence of Coiled-Coil.%3B~High confidence in function and specificity	gene	gene632	http://www.ncbi.nlm.nih.gov/gene/?term=azo0627
azo0628	azo0628		azo0628	655581	657689	+	putative adenylate/guanylate cyclase	Putative adenylate/guanylate cyclase%2C%3B~Conserved hypothetical protein	gene	gene633	http://www.ncbi.nlm.nih.gov/gene/?term=azo0628
azo0629	azo0629		azo0629	657725	658321	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03000403 of Dechloromonas aromatica of 37%25 (gi|46140621|ref|ZP_00152222.2|(NBCI ENTREZ)). InterPro: Bacterial outer membrane protein (IPR006664). Pfam: OmpA family. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene634	http://www.ncbi.nlm.nih.gov/gene/?term=azo0629
azo0630	azo0630		azo0630	658318	658761	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PJS6w01004783 of Polaromonas sp. JS666 of 45%25 (gi|54028512|ref|ZP_00360661.1|(NBCI ENTREZ)). No domains predicted. signal peptide. TMH in signal peptide.%3B~Conserved hypothetical protein	gene	gene635	http://www.ncbi.nlm.nih.gov/gene/?term=azo0630
azo0631	azo0631		azo0631	658869	661868	+	HD-domain containing protein	HD-domain containing protein	gene	gene636	http://www.ncbi.nlm.nih.gov/gene/?term=azo0631
azo0632	azo0632	ilvD	ilvD	661937	663787	+	dihydroxy-acid dehydratase	Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine%2C the dehydratation of 2%2C3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. Similar to sprot|ILVD_PSEAE (74%25) and sprot|ILVD_ECOL6 (72%25). TIGRfam (TIGR00110): Dihydroxy-acid dehydratase Pfam (PF00920): Dihydroxy-acid and 6-phosphogluconate dehydratase%3B~High confidence in function and specificity	gene	gene637	http://www.ncbi.nlm.nih.gov/gene/?term=azo0632
azo0633	azo0633		azo0633	663873	664067	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Mflag03001107 of Methylobacillus flagellatus of 42%25 (gi|53759956|ref|ZP_00350342.1|(NBCI ENTREZ)). No Signal peptide or TMH present. No domains predicted.	gene	gene638	http://www.ncbi.nlm.nih.gov/gene/?term=azo0633
azo0634	azo0634		azo0634	664076	664372	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to NE1890 of N.europaea of 35%25 (tremble:Q82TJ7) Has PF05164%2C Family of unknown function (DUF710)%3BIPR007838%3BFamily of eubacterial hypothetical proteins. No signal peptid. No TMHs	gene	gene639	http://www.ncbi.nlm.nih.gov/gene/?term=azo0634
azo0635	azo0635		azo0635	664722	665201	+	conserved hypothetical protein	Hypothetical protein%2C 72%25 identity(81%25 similarity) to TrEMBL%3BQ82TJ8. TrEMBL%3BQ8XWR7(62%25 identity). Has PF04543%2C Family of unknown function (DUF589)%3BIPR007628 %3BFamily of uncharacterised proteins%3B~Function unclear	gene	gene640	http://www.ncbi.nlm.nih.gov/gene/?term=azo0635
azo0636	azo0636		azo0636	665191	665997	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. TREMBL:Q82TJ9: 43%25 identity%2C 59%25 similarity InterPro:IPR002781%3B DUF81. Pfam:PF01925%3B DUF81 no signal peptide. 8 TMHs%3B~Conserved hypothetical protein	gene	gene641	http://www.ncbi.nlm.nih.gov/gene/?term=azo0636
azo0637	azo0637		azo0637	666063	666431	+	Hypothetical protein	Hypothetical protein Extremely poor homology with hits in the DB. NO features/signal Peptide/Domains present.	gene	gene642	http://www.ncbi.nlm.nih.gov/gene/?term=azo0637
azo0638	azo0638		azo0638	666529	667926	+	conserved hypothetical protein	Conserved hypothtecial protein. Homology to Avin02002811 of Azotobacter vinelandii of 50%25 (gi|23103464|ref|ZP_00089946.1|(NBCI ENTREZ)). InterPro: Domain of unknown function DUF224 (IPR004017). no signal peptide. no TMHs	gene	gene643	http://www.ncbi.nlm.nih.gov/gene/?term=azo0638
azo0639	azo0639		azo0639	668039	668347	+	Hypothetical protein	Hypothetical protein. 22%25 identity to SwissProt%3BP45905 No domains%2C repeats%2C motifs or features present.	gene	gene644	http://www.ncbi.nlm.nih.gov/gene/?term=azo0639
azo0640	azo0640	mntC1	mntC1	668355	669284	-	putative manganese transport system%2C periplasmic-binding protein	Part of the ABC transporter complex mntABC involved in manganese uptake. 41%25 Similar to the putative periplasmic-binding protein MntC precursor in E.coli. The MntC protein is also involved in the resistance to oxidative stress in N gonorrhoaeae. TREMBL E.coli:Q9F4F6. InterPro:IPR006128%3B Lipoprotein_4.IPR006127%3B SBP_bac_9. Pfam:PF01297%3B SBP_bac_9%3B 1. Signal peptide present.TMHelix:1 This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity	gene	gene645	http://www.ncbi.nlm.nih.gov/gene/?term=azo0640
azo0641	azo0641	mntB1	mntB1	669287	670171	-	putative manganese transport system%2C permease protein	Part of the ABC transporter complex mntABC involved in manganese import. Probably responsible for the translocation of the substrate across the membrane. Similar to the permease protein%2C MntB in Synechocystis 6803. 30%25 IPR001626%3B ABC_transpt3. Pfam%3B PF00950%3B ABC-3%3B 1. This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity	gene	gene646	http://www.ncbi.nlm.nih.gov/gene/?term=azo0641
azo0642	azo0642	mntA1	mntA1	670168	670938	-	putative manganese transport system%2C ATP-asa protein	Manganese transport system ATP-binding protein mntA. This protein is probably a component of a manganese permease a binding protein-dependent ATP-driven transport system (mntABC). Probably responsible for energy coupling to the transport system. 36%25 AAA_ATPase.IPR003439%2CAAA ATPase superfamily%3B ABC_transporter. Pfam: PF00005%3B ABC_tran%3B 1. This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity	gene	gene647	http://www.ncbi.nlm.nih.gov/gene/?term=azo0642
azo0643	azo0643		azo0643	670947	671174	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA1811 of Azoarcus sp. EbN1 of 38%25 (gi|56476415|ref|YP_158004.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene648	http://www.ncbi.nlm.nih.gov/gene/?term=azo0643
azo0644	azo0644		azo0644	671152	671676	-	putative regulatory protein	Putative regulator protein%2C probably involved in the regulation of cation uptake systems. 32%25 FUR.IPR009058%3B Wing_hlx_DNA_bnd. Pfam:PF01475%3B FUR%3B 1.Fur family protein 30%25%3B~Function unclear	gene	gene649	http://www.ncbi.nlm.nih.gov/gene/?term=azo0644
azo0645	azo0645		azo0645	671714	672076	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to PSPTO4639 of P.syringae of 41%25 (tremble:Q87WB4) No domains predicted. No TMHs. No signal peptide	gene	gene650	http://www.ncbi.nlm.nih.gov/gene/?term=azo0645
azo0646	azo0646		azo0646	672312	674498	+	toxin secretion ABC transporter permease and ATP-binding protein	HlyB-family protein. Similar to TREMBL:Q7WBM7 (50%25 identity)%3B TREMBL:Q9KKL9 (41%25 identity)%3B SWISSPROT:P18770 (28%25 identity). Pfam (PF00005): ABC transporter. Pfam (PF00664): ABC transporter transmembrane region. TMHMM reporting four transmembrane helices. TC (3.A.1.109.3): LapA adhesin protein exporter%2C LapB.%3B~High confidence in function and specificity	gene	gene651	http://www.ncbi.nlm.nih.gov/gene/?term=azo0646
azo0647	azo0647	hylD	hylD	674498	675913	+	putatice HlyD family secretion protein	Putative HylD family secretion protein. Homology to hylD of E. coli of 24%25 (sprot|HLY4_ECOLI) Involved in the transport of hemolysin A. InterPro: HlyD family secretion protein%3B Gram-negative bacteril RTX secretion protein D Pfam: HylD family secretion protein no signal peptide no TMHs%3B~Family membership	gene	gene652	http://www.ncbi.nlm.nih.gov/gene/?term=azo0647
azo0648	azo0648		azo0648	675910	676521	+	putative DNA-binding response regulator%2C LuxR family	Putative DNA-binding response regulator%2C LuxR family%2C%3B~Function unclear	gene	gene653	http://www.ncbi.nlm.nih.gov/gene/?term=azo0648
azo0649	azo0649		azo0649	676646	679489	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA1795 of Azoarcus sp. EbN1 of 46%25 (gnl|keqq|eba:ebA1795(KEGG)). No domains predicted. No TMHs.	gene	gene654	http://www.ncbi.nlm.nih.gov/gene/?term=azo0649
azo0650	azo0650		azo0650	679569	680795	+	conserved hypothetical glycosyltransferase	Conserved hypothetical glycosyltransferase. Homology to gsu0991 of G. sulfurreducens of 30%25 (tremblnew|AAR34318) Pfam: Glycosyl transferase group 1 no signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene655	http://www.ncbi.nlm.nih.gov/gene/?term=azo0650
azo0651	azo0651		azo0651	680822	681160	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebB52 Azoarcus sp. EbN1 of 40%25 (gnl|keqq|eba:ebB52(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene656	http://www.ncbi.nlm.nih.gov/gene/?term=azo0651
azo0652	azo0652		azo0652	681161	683074	-	conserved hypothetical GGDEF domain protein	Conserved hypothetical GGDF domain protein. Homology to CV0310 of Chromobacterium violaceum of 34%25 (trembl|Q7P1A3). Has IPR003660_HAMP%2CSMART%3BSM00304:This domain is known as the HAMP domain for histidine kinases%2Cadenylyl cyclases%2C methyl binding proteins and phosphatases. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. Has IPR000160_GGDEF(SMART%3BSM00267)%3BThis domain is found linked to a wide range of non-homologous domains in a variety of bacteria. The function of this domain is unknown%2C however it has been shown to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins%2C namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum%2C both of which regulate the turnover of cyclic diguanosine monophosphate. Has DUF2: This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with PAS IPR000014 and DUF9 IPR000160 domains that are also found in many signalling proteins. signal peptide 1 TMH%3B~Conserved hypothetical protein	gene	gene657	http://www.ncbi.nlm.nih.gov/gene/?term=azo0652
azo0653	azo0653		azo0653	683109	683831	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to BB1185 of Bordetella bronchiseptica of 49%25 (trembl|Q7WN55(SRS)) Signal peptide present. No TMHs Has PF06035%2C Bacterial protein of unknown function (DUF920)%3BIPR010319%3B This family consists of several hypothetical bacterial proteins of unknown function.%3B~Conserved hypothetical protein	gene	gene658	http://www.ncbi.nlm.nih.gov/gene/?term=azo0653
azo0654	azo0654	aggA	aggA	684035	685477	+	putative outer membrane efflux protein	Putative outer membrane efflux protein. Homology to aggA from P. putida of 35%25. The OEP family (outer membrane efflux protein) allow export of a variety of substrates in Gram negative bacteria. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHs%3B~Function unclear	gene	gene659	http://www.ncbi.nlm.nih.gov/gene/?term=azo0654
azo0655	azo0655		azo0655	685558	689061	+	putative two-component sensor histidine kinase protein	Putative two-component sensor histidine kinase protein. TrEMBL%3B Q87XU6( 47%25 identity%2C 64%25 similarity)%2CQ6F9J5(43%25 identity%2C61%25 similarity)%2CQ6NAD6(44%25 Identity%2C61%25 similarity). TMHMM2 reporting 2 TMH's present. No Signal peptide Present. Has PF02133%3BPermease for cytosine/purines%2C uracil%2C thiamine%2C allantoin: IPR001248%3BCyt_pur_permease:The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. Has PF07578:Lipid A Biosynthesis N-terminal domain%3BThis family is found at the N-terminus of a group of Chlamydial Lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function. Has SMART%3BSM00388:(IPR003661)Dimerisation and phosphoacceptor domain of histidine kinases.The histidine kinase A (phosphoacceptor) N-terminal domain is a dimerisation and phosphoacceptor domain of histidine kinases. It has been found in bacterial sensor protein/histidine kinases. IPR003594%3BATPbind_ATPase%3B(SM00387)This domain is found in several ATP-binding proteins for example: histidine kinase%2C DNA gyrase B%2C topoisomerases%2C heat shock protein HSP90%2C phytochrome-like ATPases and DNA mismatch repair proteins. SM00448%3BIPR001789%3BResponse_reg:This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.%3B~High confidence in function and specificity	gene	gene660	http://www.ncbi.nlm.nih.gov/gene/?term=azo0655
azo0656	azo0656		azo0656	689058	690014	+	putative transcriptional regulator%2C LuxR family	Putative transcriptional regulator%2C LuxR family%2CResponse_reg. IPR000792%3B HTH_LuxR. Pfam: PF00072%3B response_reg. PF00196%3B GerE. SMART: SM00448%3B REC. SM00421%3B HTH_LUXR. HTH reporting reporting nucleic acid binding motif.%3B~Family membership	gene	gene661	http://www.ncbi.nlm.nih.gov/gene/?term=azo0656
azo0657	azo0657		azo0657	691405	692367	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Raeut03005995 of Ralstonia eutropha of 34%25 (gi|53760601|ref|ZP_00350538.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 10 TMHs%3B~Conserved hypothetical protein	gene	gene662	http://www.ncbi.nlm.nih.gov/gene/?term=azo0657
azo0658	azo0658		azo0658	692364	693995	+	hypothetical membrane protein	Hypothetical membrane protein. No homology of the entire protein to the data bank. No domains predicted. No signal peptide. 12 TMHs	gene	gene663	http://www.ncbi.nlm.nih.gov/gene/?term=azo0658
azo0659	azo0659	gor	gor	694005	695342	-	probable glutathione-disulfide reductase	Probable glutathione-disulfide reductase. Homology to gor of E. coli of 53%25 (sprot|GSHR_ECOLI). Maintain high levels of reduced glutathione in the cytosol. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327)%3B NAD binding site (IPR000205)%3B Pyridine nuclotide-disulfide oxidoreductase dimerisation doamin (IPR004099)%3B Pyridine nucleotide-disulphide oxidoreductase%2C class I (IPR001100) Pfam: Pyridine nuccleotide-dusulfphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase dimerisation domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene664	http://www.ncbi.nlm.nih.gov/gene/?term=azo0659
azo0660	azo0660		azo0660	695491	697395	+	ABC transporter permease and ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q87G83 (52%25 identity)%3B TREMBL:Q9K1A3 (61%25 identity)%3B SWISSPROT:Q57180 (60%25 identity). Pfam (PF00005): ABC transporter. TMHMM reporting five transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Specificity unclear	gene	gene665	http://www.ncbi.nlm.nih.gov/gene/?term=azo0660
azo0661	azo0661		azo0661	697403	697951	+	conserved hypothetical protein	Hypothetical protein ygjP. TREMBL:Q83JJ6: 60%25 identity%2C74%25 similarity (probable metal dependent hydrolase) Members of this family are found in some archaebacteria%2C as well as Helicobacter pylori. The proteins are 190-240 amino acids long%2C with the C terminus being the most conserved region%2C containing three conserved histidines InterPro:IPR002725%3B DUF45. Pfam:PF01863%3B DUF45 Non secretory protein with probability of signal peptide being 0.243 No transmembrane helices gmhA: phosphoheptose isomerase%3B~High confidence in function and specificity	gene	gene666	http://www.ncbi.nlm.nih.gov/gene/?term=azo0661
azo0662	azo0662		azo0662	697992	698543	-	conserved hypothetical secreted protein	conserved hypothetical secreted protein. Homology to bA4595 of Azoarcus sp. EbN1 of 52%25 (gnl|keqq|eba:ebA4595(KEGG)) . No domains predicted. No TMHs. Signal Peptide present.%3B~Conserved hypothetical protein	gene	gene667	http://www.ncbi.nlm.nih.gov/gene/?term=azo0662
azo0663	azo0663		azo0663	698767	699378	+	probable CDP-alcohol phosphatidyltransferase family protein.	Catalysis of the reaction: CDP + alcohol %3D CMP + phosphatidyl alcohol. Entry name Q8PQ18 Primary accession number: Q8PQ18 InterPro IPR000462%3B CDP-OH_P_trans. Pfam PF01066%3B CDP-OH_P_transf%3B 1. Identities %3D 114/203 (56%25)%2CPrediction: Signal peptide Signal peptide probability: 0.988 Number of predicted TMHs: 3%3B~Family membership	gene	gene668	http://www.ncbi.nlm.nih.gov/gene/?term=azo0663
azo0664	azo0664		azo0664	699386	701152	+	conserved hypothetical protein	Similar to TREMBL:Q87TY0 (64%25 identity)%3B TREMBL:Q8PQ17 (61%25 identity)%3B SWISSPROT:P76092 (55%25 identity).	gene	gene669	http://www.ncbi.nlm.nih.gov/gene/?term=azo0664
azo0665	azo0665		azo0665	701149	702507	+	conserved hypothetical protein	Entry name:- Q9I0U5 Primary accession number:-Q9I0U5 InterPro:- IPR008934%3B AcPase_VanPerase. IPR000340%3B DS_phosphatase. IPR000326%3B PA_PTPase. Number of predicted TMHs: 8 Prediction: Non-secretory protein Signal peptide probability: 0.061 IPR000387%3B TYR_phosphatase. Pfam PF00782%3B DSPc%3B 1. PF01569%3B PAP2%3B 1. Identity:- 58%25	gene	gene670	http://www.ncbi.nlm.nih.gov/gene/?term=azo0665
azo0666	azo0666		azo0666	702500	702943	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA2538 of Pseudomonas aeruginosa of 36%25 (trembl|Q9I0U6). No domains predicted. No signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene671	http://www.ncbi.nlm.nih.gov/gene/?term=azo0666
azo0667	azo0667		azo0667	702973	703596	+	putative acyltransferase	FUNCTION: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the 2 position. This enzyme can utilize either acyl-CoA or acyl-acyl carrier protein as the fatty acyl donor. CATALYTIC ACTIVITY: Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate %3D CoA + 1%2C2-diacyl-sn-glycerol 3-phosphate. Entry name:-SWISSPROT:PLSC_ECOLI Prim. accession # P26647 InterPro:-IPR002123%3B Acyltransferase. IPR004552%3B AGP_acyltrn. Pfam:-PF01553%3B Acyltransferase%3B 1. Identities %3D 42/127 (33%25) Prediction: Non-secretory protein Signal peptide probability: 0.014 Number of predicted TMHs: 0%3B~Family membership	gene	gene672	http://www.ncbi.nlm.nih.gov/gene/?term=azo0667
azo0668	azo0668		azo0668	703602	704546	+	conserved hypothetical phosphatidate cytidylyltransferase	Conserved hypothetical phoshpatidate cytidyltransferase. Homology to pa2536 of P. aeruginosa (trembl|Q9I0U8). Phosphatidate cytidylyltransferase is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate %3D diphosphate + CDP-diacylglycerol Pfam: Phospatidate cytidyltransferase signal peptide 7 TMHs InterPro: Phosphatidate cytidylyltransferase stp: serine transporter%3B~Family membership	gene	gene673	http://www.ncbi.nlm.nih.gov/gene/?term=azo0668
azo0669	azo0669	napC1	napC1	704566	705237	-	probable cytochrome C-type protein NapC	Probable cytochrome c-type protein NapC. Homology to napC of r. sphaeroides of 67%25 (sprot|NAPC_RHOSH). MEDIATES ELECTRON FLOW FROM QUINONES TO THE NAPAB COMPLEX. signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene674	http://www.ncbi.nlm.nih.gov/gene/?term=azo0669
azo0670	azo0670	napB1	napB1	705250	705717	-	probable diheme cytochrome C	probable diheme cytochrome c. Homology to napB of A. eutrophus of 51%25 (sprot|NAPB_ALCEU). SMALL SUBUNIT OF THE PERIPLASMIC NITRATE REDUCTASE (NAP). ONLY EXPRESSED AT HIGH LEVELS DURING AEROBIC GROWTH. NAPAB COMPLEX RECEIVES ELECTRONS FROM THE MEMBRANE-ANCHORED TETRAHEME NAPC PROTEIN THUS ALLOWING ELECTRON FLOW BETWEEN MEMBRANE AND PERIPLASM. ESSENTIAL FUNCTION FOR NITRATE ASSIMILATION AND MAY HAVE A ROLE IN ANAEROBIC METABOLISM. signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene675	http://www.ncbi.nlm.nih.gov/gene/?term=azo0670
azo0671	azo0671	napA1	napA1	705728	708220	-	nitrate reductase	Nitrate reductase large subunit. Homology to napA of a. eutrophus of 76%25 (sprot|NAPA_ALCEU). ONLY EXPRESSED AT HIGH LEVELS DURING AEROBIC GROWTH. NAPAB COMPLEX RECEIVES ELECTRONS FROM THE MEMBRANE-ANCHORED TETRAHEME NAPC PROTEIN THUS ALLOWING ELECTRON FLOW BETWEEN MEMBRANE AND PERIPLASM. ESSENTIAL FUNCTION FOR NITRATE ASSIMILATION AND MAY HAVE A ROLE IN ANAEROBIC METABOLISM. InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655) Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene676	http://www.ncbi.nlm.nih.gov/gene/?term=azo0671
azo0672	azo0672	napD1	napD1	708192	708494	-	putative NapD protein	Putative NapD protein%2C component of of periplasmic nitrate reductase system. Plays a role in the correct assembly of subunits of the periplasmic napAB enzyme. Homology to napD of Rhodobacter sphaeroides of 26%25 (gi|3345484|dbj|AB016290.1|). InterPro:IPR005623%3B NapD. Pfam:PF03927%3B NapD%3B 1. no signal peptide. No TMHs.%3B~Function unclear	gene	gene677	http://www.ncbi.nlm.nih.gov/gene/?term=azo0672
azo0673	azo0673	napE	napE	708506	708664	-	putative periplasmic nitrate reductase accessory protein NapE	Putative periplasmic nitrate reductase accessory protein NapE. Homology to napE of R. sphaeroides of 36%25 (trembl|O88159). Pfam: Periplasmic nitrate reductase protein NapE (PF06796) This family consists of several bacterial periplasmic nitrate reductase NapE proteins. NapE is thought to be a transmembrane protein of the reductase. Interpro: Periplasmic nitrate reductase protein NapE (IPR010649) no signal peptide 1 TMH%3B~Family membership	gene	gene678	http://www.ncbi.nlm.nih.gov/gene/?term=azo0673
azo0674	azo0674	amiC2	amiC2	709010	710266	+	putative aliphatic amidase expression-regulating protein	AmiC regulates the expression of the inducible aliphatic amidase activity in Pseudomonas aeruginosa. Similar to trembl|Q87VQ0 (80%25) and to sprot|AMIC_PSEAE (27%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene679	http://www.ncbi.nlm.nih.gov/gene/?term=azo0674
azo0675	azo0675		azo0675	710535	712166	+	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q87VP9 (50%25)and to pir|AB0146 (48%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting nine Tmhelix. SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene680	http://www.ncbi.nlm.nih.gov/gene/?term=azo0675
azo0676	azo0676	urtC	urtC	712360	713553	+	probable ABC transporter%2C membrane spanning protein	Probable ABC transporter%2C membrane spanning protein. Homology to urtC of Anabaena sp. of 41%25 (involved in urea transport). Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) Pfam: Branched-chain amino acid transport system signal peptide probable 9 TMHs%3B~Function unclear	gene	gene681	http://www.ncbi.nlm.nih.gov/gene/?term=azo0676
azo0677	azo0677	urtD	urtD	713550	714407	+	conserved hypothetical ABC transporter%2C ATP binding protein	Conserved hypothetical ABC transporter%2C ATP binding protein. Homology to pp4844 of P. putida of 70%25 (trembl|Q88DI1). Probable component of a branched-chain amino-acid transport system. Pfam: ABC-Transporter no signal peptide no TMHs%3B~Family membership	gene	gene682	http://www.ncbi.nlm.nih.gov/gene/?term=azo0677
azo0678	azo0678	urtE	urtE	714834	715526	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q88DI0 (59%25) and to sprot|BRAG_PSEAE (35%25). Pfam: ABC transporter Smart: AAA ATPases%3B~Specificity unclear	gene	gene683	http://www.ncbi.nlm.nih.gov/gene/?term=azo0678
azo0679	azo0679	nodD	nodD	715560	716513	+	probable nodulation protein	Probable nodulation protein%2C%3B~Function unclear	gene	gene684	http://www.ncbi.nlm.nih.gov/gene/?term=azo0679
azo0680	azo0680	caiD	caiD	716527	717309	-	putative Carnitinyl-CoA dehydratase	Function: Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotobetainyl-CoA. Entry name CAID_ECO57 Primary accession number Q8XA35 InterPro IPR001753%3B EnCoA_hydrtse. Pfam PF00378%3B ECH%3B 1. Identities %3D 30%25 Prediction: Non-secretory protein Signal peptide probability: 0.003 Number of predicted TMHs: 0%3B~Family membership	gene	gene685	http://www.ncbi.nlm.nih.gov/gene/?term=azo0680
azo0681	azo0681		azo0681	717556	717876	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PP2796 of P. putida of 44%25 (trembl|Q88J53) PF04341%2CProtein of unknown function%2C DUF485%3BIPR007436%3BThis family includes several putative integral membrane proteins. signal peptide 1 TMHs%3B~Conserved hypothetical protein	gene	gene686	http://www.ncbi.nlm.nih.gov/gene/?term=azo0681
azo0682	azo0682		azo0682	717876	719555	+	conserved hypothetical sodium:solute symporter	conserved hypothetical sodium:solute symporter: Homology to an orf of P. aeruginosa of 72%25 (trembl|Q9APX1). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force%2C SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars%2C amino acids%2C nucleosides%2C inositols%2C vitamins%2Curea or anions%2C depending on the system. InterPro: Sodium:solute symporter family (IPR001734) Tigrfam: sss: SSS sodium solute transporter superfamily Pfam: Sodim:solute symporter family signal peptide 13 TMHs%3B~Family membership	gene	gene687	http://www.ncbi.nlm.nih.gov/gene/?term=azo0682
azo0683	azo0683	ytfL1	ytfL1	719709	721004	+	probable hemolysin	Hypothetical protein ytfL. TREMBL:Q7NQ98: 61%25 identity%2C 78%25 similarity InterPro IPR002550%3B CBS. IPR000644%3B CBS_domain. IPR005170%3B CorC_transpt-asc. Pfam: PF00571%3B CBS%3B 2. PF03471%3B CorC_HlyC%3B PF01595%3B DUF21%3B gntP: gluconate transporter Signal peptide present (Signal P predicted) Transmembrane helices 4 (TMHMM predicted)%3B~High confidence in function and specificity	gene	gene688	http://www.ncbi.nlm.nih.gov/gene/?term=azo0683
azo0684	azo0684	mdcY	mdcY	721389	722060	-	transcriptional regulator%2C GntR-family	Transcriptional regulator%2C GntR-family%2C%3B~High confidence in function and specificity	gene	gene689	http://www.ncbi.nlm.nih.gov/gene/?term=azo0684
azo0685	azo0685	mutB	mutB	722387	724552	+	probable Methylmalonyl-CoA mutase large subunit	FUNCTION: Catalyzes the isomerization of succinyl-CoA to methylmalonyl-CoA during synthesis of propionate from tricarboxylic acid-cycle intermediates (By similarity). ACtivity:- (R)-2-Methylmalonyl-CoA %3D succinyl-CoA Entry name :- MUTB_PORGI Primary accession number :-Q59677 Identities %3D 467/679 (68%25) InterPro :-IPR006159%3B Acid_CoA_mut_C. IPR006158%3B B12-binding. IPR006099%3B MMCoA_mutase. IPR006098%3B MMCoA_mutase_N. IPR006100%3B MMCoA_mutase_sub. Pfam PF02310%3B B12-binding%3B 1. PF01642%3B MM_CoA_mutase%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene690	http://www.ncbi.nlm.nih.gov/gene/?term=azo0685
azo0686	azo0686	argK	argK	724619	725632	+	putative LAO/AO transport system kinase	Putative LAO/AO transport system kinase. Homology to argK of E. coli (sprot|ARGK_ECOLI). In Escherichia coli K-12%2C the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase%2C ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase. no signal peptide no TMHs%3B~Family membership	gene	gene691	http://www.ncbi.nlm.nih.gov/gene/?term=azo0686
azo0687	azo0687	pccB	pccB	725698	727233	+	probable propionyl-coa carboxylase beta subunit.	Activity:- ATP + propanoyl-CoA + HCO3- %3D ADP + phosphate + (S)-methylmalonyl-CoA Entry name:-TREMBL:Q8U9Y9 Prim. accession # Q8U9Y9 InterPro:-IPR000438%3B ACoACC_transB. IPR000022%3B Carboxyl_trans. Pfam:- PF01039%3B Carboxyl_trans%3B 1. Identities %3D 363/511 (71%25) Number of predicted TMHs: 0%3B~Family membership	gene	gene692	http://www.ncbi.nlm.nih.gov/gene/?term=azo0687
azo0688	azo0688	pccA	pccA	727372	729378	+	probable propionyl-CoA carboxylase alpha chain	Activity:- ATP + propanoyl-CoA + HCO3- %3D ADP + phosphate + (S)-methylmalonyl-CoA Entry name :- Q8U9Z4 Primary accession number:- Q8U9Z4 InterPro:- IPR001882%3B Biotin_BS. IPR005482%3B Biotin_carb_C. IPR000089%3B Biotin_lipoyl. IPR005481%3B CPase_L_N. IPR005479%3B Cphp_synth_L_D2. Pfam:- PF02785%3B Biotin_carb_C%3B 1. PF00364%3B Biotin_lipoyl%3B 1. PF00289%3B CPSase_L_chain%3B 1. PF02786%3B CPSase_L_D2%3B 1. Identities %3D 400/673 (59%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene693	http://www.ncbi.nlm.nih.gov/gene/?term=azo0688
azo0689	azo0689		azo0689	729561	732017	+	GGEF/EAL/PAS/PAC-domain containing protein	GGEF/EAL/PAS/PAC-domain containing protein%2C sym%3B pNGR234a) / TREMBL: trembl|Q7NYX4 (40%25 Chromobacterium violaceum%2C cv1148) InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. IPR001633 EAL. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF00563 EAL domain. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain.	gene	gene694	http://www.ncbi.nlm.nih.gov/gene/?term=azo0689
azo0690	azo0690		azo0690	732026	733909	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to PA4929 of P.aeruginosa of 32%25 (trembl|Q9HUN5(SRS)). Signal P reporting presence of signal peptide. 7 TMHs Has PF07696: 7TMR-DISM extracellular 2%3B This entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives. Has PF07695:7TM diverse intracellular signalling domain%3BThis entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules). Has IPR000160%3BGGDEF:(SM00267)This domain is found linked to a wide range of non-homologous domains. The function of this domain is unknown This domain is found in proteins which contain bacterial signaling domains. Has PF07696:7TMR-DISM extracellular 2 domain%3BThis entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives.	gene	gene695	http://www.ncbi.nlm.nih.gov/gene/?term=azo0690
azo0691	azo0691		azo0691	734005	734865	+	conserved hypothetical metallopeptidase	Conserved hypothetical metallopeptidase. Homology to bpp2257 of B. parapertussis of 63%25 (trembl|Q7W887). Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases%2C however there is no evidence to support their function as metallopeptidases. Pfam: putaive neutral zinc metallopeptidase no signal peptide 1 TMH%3B~Specificity unclear	gene	gene696	http://www.ncbi.nlm.nih.gov/gene/?term=azo0691
azo0692	azo0692	gloA1	gloA1	734887	735363	-	probable lactoylglutathione lyase	Glyoxalase I (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway in the following reaction: glutathione + methylglyoxal %3D (R)-S-lactoylglutathione%2C%3B~Function unclear	gene	gene697	http://www.ncbi.nlm.nih.gov/gene/?term=azo0692
azo0693	azo0693	virG	virG	735949	736680	-	probable DNA-binding response regulator	Probable DNA-binding response regulator%2CResponse_reg. IPR001867%3B Trans_reg_C. Pfam: PF00072%3B response_reg. PF00486%3B trans_reg_C. SMART: SM00448%3B REC.%3B~Specificity unclear	gene	gene698	http://www.ncbi.nlm.nih.gov/gene/?term=azo0693
azo0694	azo0694		azo0694	736677	738734	-	putative hybrid sensor and regulator protein	Putative hybrid sensor and regulator protein%2C%3B~Specificity unclear	gene	gene699	http://www.ncbi.nlm.nih.gov/gene/?term=azo0694
azo0695	azo0695	oruR1	oruR1	738888	739898	-	putative ornithine utilization regulator	Putative ornithine utilization regulator%2C%3B~Specificity unclear	gene	gene700	http://www.ncbi.nlm.nih.gov/gene/?term=azo0695
azo0696	azo0696		azo0696	740204	743470	+	probable methylmalonyl-coa mutase protein	Methylmalonyl-CoA mutase mitochondrial precursor (EC 5.4.99.2) (MCM). INVOLVED IN MAN IN THE DEGRADATION OF SEVERAL AMINO ACIDS ODD-CHAIN FATTY ACIDS AND CHOLESTEROL VIA PROPIONYL-COA TO THE TRICARBOXYLIC ACID CYCLE. MCM HAS DIFFERENT FUNCTIONS IN OTHER SPECIES. Activity:-(R)-2-Methylmalonyl-CoA %3D succinyl-CoA Entry name :-TREMBL:Q8Y2U5 Prim. accession # Q8Y2U5 Identities %3D 797/1103 (72%25) InterPro:- IPR006159%3B Acid_CoA_mut_C. IPR005129%3B ArgK. IPR006158%3B B12-binding. IPR006099%3B MMCoA_mutase. IPR006098%3B MMCoA_mutase_N. Pfam:- PF03308%3B ArgK%3B 1. PF02310%3B B12-binding%3B 1. PF01642%3B MM_CoA_mutase%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.005 Number of predicted TMHs: 0%3B~Family membership	gene	gene701	http://www.ncbi.nlm.nih.gov/gene/?term=azo0696
azo0697	azo0697		azo0697	743567	743848	-	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs	gene	gene702	http://www.ncbi.nlm.nih.gov/gene/?term=azo0697
azo0698	azo0698	fumC	fumC	743845	745224	-	fumarate hydratase	Fumarate hydratase. Homology to fumCo f P. aerunigosa of 76%25 (sprot|FMC1_PSEAE). Catalyzes the reversible hydration of fumarate to L-malate. Tigrfam: aspA: aspartate ammonia-lyase Pfam: Lyase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene703	http://www.ncbi.nlm.nih.gov/gene/?term=azo0698
azo0699	azo0699		azo0699	745304	746044	-	hypothetical secreted protein	Hypothetical secreted protein. No significant homology to the data bank. no domains pedicted. signal peptide. TMH in signal peptide	gene	gene704	http://www.ncbi.nlm.nih.gov/gene/?term=azo0699
azo0700	azo0700		azo0700	746188	747486	-	conserved hypothetical protein	Hypothetical protein%2C 52%25 identity to TrEMBL%3BQ8XYG9. Has PF03781%2C Domain of unknown function (DUF323)%3BIPR005532 %3BThis presumed domain is found in bacterial proteins. In some cases these proteins also contain a protein kinase domain. The function of this domain is unknown. The domain has also been found in a eukaryotic protein%2C required for post-translational sulphatase modification.%3B~Function unclear	gene	gene705	http://www.ncbi.nlm.nih.gov/gene/?term=azo0700
azo0701	azo0701	nagZ1	nagZ1	747598	748953	-	putative beta-hexosaminidase	(N-acetyl-beta-glucosaminidase)(Beta-N-acetylhexosaminidase). Cleaves GlcNAc linked beta-1%2C4 to MurNAc tripeptides (By similarity). Hydrolyzes rapidly p-nitrophenyl-N-acetyl-beta-D-glucosaminide (PNP-beta-GlcNAc) and 4-methylumbelliferyl-beta-GlcNAc%2C and slightly active on p-nitrophenyl-beta-GalNAc. May play a role in signal transduction between host and organism. 34%25 Glyco_hydro_3N. Pfam:PF00933%3B Glyco_hydro_3%3B 1. TMhelix:2.%3B~High confidence in function and specificity	gene	gene706	http://www.ncbi.nlm.nih.gov/gene/?term=azo0701
azo0702	azo0702	creD	creD	748950	750281	-	inner membrane protein CreD	CreD confers tolerance to colicin E2. Similar to SWISSPROT:P08369 (35%25 identity). TMHMM reporting six transmembrane helices.%3B~High confidence in function and specificity	gene	gene707	http://www.ncbi.nlm.nih.gov/gene/?term=azo0702
azo0703	azo0703	creC	creC	750394	751824	-	catabolite repression sensor kinase for PhoB	Sensor protein creC%2C%3B~High confidence in function and specificity	gene	gene708	http://www.ncbi.nlm.nih.gov/gene/?term=azo0703
azo0704	azo0704	creB	creB	751848	752555	-	two-component system regulatory protein	transcriptional regulatory protein creB%2CResponse_reg. IPR001867%3B Trans_reg_C. Pfam:PF00072%3B response_reg. PF00486%3B trans_reg_C. SMART:SM00448%3B REC. Transcriptional regulatory protein creB. MEMBER OF THE TWO-COMPONENT REGULATORY SYSTEM CREC/CREB INVOLVED IN CATABOLIC REGULATION.%3B~High confidence in function and specificity	gene	gene709	http://www.ncbi.nlm.nih.gov/gene/?term=azo0704
azo0705	azo0705	mgtE	mgtE	752570	754012	-	putative magnesium transport protein	Probable magnesium transporter%2C MgtE. Members of this family probably transport Mg2+ or other divalent cations into the cell. 26%25 CBS_domain.IPR006667%3B MgtE_integrmembr. Pfam:PF00571%3B CBS%3B 2.PF01769%3B MgtE%3B 1. TMHleix: 3.%3B~Function unclear	gene	gene710	http://www.ncbi.nlm.nih.gov/gene/?term=azo0705
azo0706	azo0706	mtgA	mtgA	754167	754862	-	probable monofunctional biosynthetic peptidoglycan transglycosylase	Probable monofunctional biosynthetic peptidoglycan transglycosylase. Homology to mtgA of N. gonorrhoeae of 43%25 (sprot|MTGA_NEIGO) Cell wall formation (By similarity). The transglycosylase domain catalyses the polymerisation of murein glycan chains. Pfam: Transglycosylase signal peptide no TMHs%3B~Function unclear	gene	gene711	http://www.ncbi.nlm.nih.gov/gene/?term=azo0706
azo0707	azo0707	aroE	aroE	754859	755704	-	AroE protein	Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Similar to sprot|AROE_ECOL6 (51%25)%2C to trembl|Q7W3V3 (45%25) and to sprot|AROE_PSEAE (43%25). TIGRFAM: aroE%2C shikimate 5-dehydrogenase Pfam: Shikimate / quinate 5-dehydrogenase%3B~High confidence in function and specificity	gene	gene712	http://www.ncbi.nlm.nih.gov/gene/?term=azo0707
azo0708	azo0708		azo0708	755718	756620	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ne1626 of N. europaea of 46%25 (trembl|Q82U75) no domains predicted signal peptide TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene713	http://www.ncbi.nlm.nih.gov/gene/?term=azo0708
azo0709	azo0709		azo0709	756666	758567	-	putative exoribonuclease II	Putative exoribonuclease II (EC: 3.1.13.1)%2C RNase R / VacB protein) / TREMBL: trembl|Q7P1X0 (50%25 Chromobacterium violaceum%2C probable ribonuclease ll%2Ccv0092) InterPro: IPR001900 Ribonuclease_II. Pfam: PF00773 RNB-like protein.%3B~Conserved hypothetical protein	gene	gene714	http://www.ncbi.nlm.nih.gov/gene/?term=azo0709
azo0710	azo0710		azo0710	758634	759479	-	putative methyltransferase	Similar to TREMBL:Q8KNG7 (29%25 identity)%3B TREMBL:Q8UEX8 (27%25 identity). Pfam (PF01209): ubiE/COQ5 methyltransferase family.%3B~Function unclear	gene	gene715	http://www.ncbi.nlm.nih.gov/gene/?term=azo0710
azo0711	azo0711		azo0711	759510	760103	-	conserved hypothetical protein	Conserrved hypothetical protein. Homology to rsc2781 of R. solanacearum of 51%25 (trembl|Q8XVP9) Pfam: UPF0227 Despite being classed as uncharacterised proteins%2Cthe members of this family are almost certainly enzymes that are distantly related to the Abhydrolase_1. no signal peptide no TMHs	gene	gene716	http://www.ncbi.nlm.nih.gov/gene/?term=azo0711
azo0712	azo0712	uppP	uppP	760137	760961	-	undecaprenol kinase	Bacitracin resistance protein%2C may confer resistance to bacitracin by phosphorylation of undecaprenol%2C SWISSPROT:Q88IY7 (47%25 identity)%3B TREMBL:Q82Y49. InterPro (IPR003824): Bacitracin resistance protein BacA. Pfam (PF02673): Bacitracin resistance protein BacA. TIGRFAM (TIGR00753): Undecaprenol kinase%2Cputative. TMHMM reporting seven transmembrane helices.%3B~High confidence in function and specificity	gene	gene717	http://www.ncbi.nlm.nih.gov/gene/?term=azo0712
azo0713	azo0713		azo0713	761053	761304	-	conserved hypothetical protein	Hypothetical protein PA1578.1. TREMBL:Q7W9P0:69%25 identity%2C 78%25 similarity TREMBL: Q8PDJ2: 69%25 identity%2C 74%25 similarity (predicted proteinase inhibitor)) Probable Fe-S cluster bearing oxidoreductase function. InterPro:IPR005358%3B UPF0153. Pfam:PF03692%3B UPF0153%3B~High confidence in function and specificity	gene	gene718	http://www.ncbi.nlm.nih.gov/gene/?term=azo0713
azo0714	azo0714		azo0714	761309	761842	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RPA1001 of R.palustris of 37%25 (tremble:Q6NB29). No domains predicted. No TMHs. No signal peptide.	gene	gene719	http://www.ncbi.nlm.nih.gov/gene/?term=azo0714
azo0715	azo0715		azo0715	761844	762548	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to DP0001 of Desulfotalea psychrophila of 43%25 (gnl|keqq|dps:DP0001(KEGG)). No domains predicted. No signal peptide. No TMHs.	gene	gene720	http://www.ncbi.nlm.nih.gov/gene/?term=azo0715
azo0716	azo0716	hrpA	hrpA	762691	766773	+	putative ATP-dependent helicase	ATP-dependent helicase hrpA. Not yet known. InterPro: DEAD/DEAH box helicase%3B~High confidence in function and specificity	gene	gene721	http://www.ncbi.nlm.nih.gov/gene/?term=azo0716
azo0717	azo0717		azo0717	766798	767121	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA3912 of Azoarcus sp. EbN1 of 45%25 (gi|56477657|ref|YP_159246.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene722	http://www.ncbi.nlm.nih.gov/gene/?term=azo0717
azo0718	azo0718	rpsF	rpsF	767369	767752	+	RpsF protein	30S ribosomal protein S6. Binds together with S18 to 16S ribosomal RNA%3B~High confidence in function and specificity	gene	gene723	http://www.ncbi.nlm.nih.gov/gene/?term=azo0718
azo0719	azo0719	priB	priB	767768	768079	+	putative primosomal replication proteinN	Putative primosomal replication protein N Homology to priB of E. coli of 31%25 (sprot|PRIB_ECOLI) Component of the preprimosomal complex composed of priA%2C priB%2C priC%2CdnaB and dnaT. Upon transient interaction with dnaG it forms the primosome. Binds single-stranded DNA. Pfam: Single-stranded binding protein family (PF00436) Interpro: Single stranded binding (IPR010913) no signal peptide no TMHs%3B~Family membership	gene	gene724	http://www.ncbi.nlm.nih.gov/gene/?term=azo0719
azo0720	azo0720	rpsR	rpsR	768081	768356	+	30S ribosomal protein S18	30S ribosomal protein S18. Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA where it helps stabilize the platform of the 30S subunit (By similarity). InterPro: Ribosomal protein S18 S18: ribosomal protein S18%3B~High confidence in function and specificity	gene	gene725	http://www.ncbi.nlm.nih.gov/gene/?term=azo0720
azo0721	azo0721	rplI	rplI	768375	768830	+	50S ribosomal protein L9	50S ribosomal protein L9. Binds to the 23S rRNA%3B~High confidence in function and specificity	gene	gene726	http://www.ncbi.nlm.nih.gov/gene/?term=azo0721
azo0722	azo0722	dnaB	dnaB	768968	770377	+	DnaB protein	Replicative DNA helicase (EC 3.6.1.-). PARTICIPATES IN INITIATION AND ELONGATION DURING CHROMOSOME REPLICATION%3B IT EXHIBITS DNA-DEPENDENT ATPASE ACTIVITY AND CONTAINS DISTINCT ACTIVE SITES FOR ATP BINDING DNA BINDING AND INTERACTION WITH DNAC PROTEIN PRIMASE AND OTHER PREPRIMING PROTEINS. InterPro: DnaB helicase%3B~High confidence in function and specificity	gene	gene727	http://www.ncbi.nlm.nih.gov/gene/?term=azo0722
azo0723	azo0723		azo0723	776049	777212	+	putative monooxygenase	Putative monoxygenase. Pfam: Monoxygenase InterPro: Aromatic-ring hydroxylase (flavoprotein monoxygenase)%3B~High confidence in function and specificity	gene	gene732	http://www.ncbi.nlm.nih.gov/gene/?term=azo0723
azo0724	azo0724	dsbC	dsbC	777226	777951	+	putative protein disulfide-isomerase	Putative protein disulfide-isomerase. Homology to dsbC of E. coli of 29%25 (sprot|DSBC_ECOLI) REQUIRED FOR DISULFIDE BOND FORMATION IN SOME PERIPLASMIC PROTEINS. ACTS BY TRANSFERRING ITS DISULFIDE BOND TO OTHER PROTEINS AND IS REDUCED IN THE PROCESS. DSBC IS REOXIDIZED BY A YET UNCHARACTERIZED PROTEIN. ALSO ACTS AS A DISULFIDE ISOMERASE. signal peptide no TMHs%3B~Family membership	gene	gene733	http://www.ncbi.nlm.nih.gov/gene/?term=azo0724
azo0725	azo0725	mltA	mltA	777974	779038	-	putative membrane-bound transglycolase	Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) (Murein hydrolase A) (Mlt38). MUREIN-DEGRADING ENZYME. MAY PLAY A ROLE IN RECYCLING OF MUROPEPTIDES DURING CELL ELONGATION AND/OR CELL DIVISION. OPTIMAL ACTIVITY IS BETWEEN PH 4.0 AND 4.5%3B LOSES ITS ACTIVITY RAPIDLY AT TEMPERATURES ABOVE 30 DEGREES CELSIUS. DEGRADES MUREIN GLYCAN STRANDS AND INSOLUBLE HIGH-MOLECULAR WEIGHT MUREIN SACCULI. ssl1: transcription factor ssl1%3B~High confidence in function and specificity	gene	gene734	http://www.ncbi.nlm.nih.gov/gene/?term=azo0725
azo0726	azo0726		azo0726	779280	779393	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH	gene	gene735	http://www.ncbi.nlm.nih.gov/gene/?term=azo0726
azo0727	azo0727		azo0727	779386	780249	+	conserved hypothetical ATPase family protein	Conserved hypothetical ATPase family protein. Homology to bb4427 of B. bronchiseptica of 65%25 (trembl|Q7WF53). Pfam: ATPase family associated with various cellular activities This large family has the key feature that they share a conserved region of about 220 amino acids that contains an ATP-binding site. no signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene736	http://www.ncbi.nlm.nih.gov/gene/?term=azo0727
azo0728	azo0728		azo0728	780242	781198	+	bifunctional DGTP-pyrophosphohydrolase/Thiamine-phosphate diphosphorylase	NUDIX hydrolase/thiamine phosphate synthase Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate (THZ-P) and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) (By similarity). InterPro: NUDIX hydrolase TIGRFAM: mutt: mutator mutT protein%3B~High confidence in function and specificity	gene	gene737	http://www.ncbi.nlm.nih.gov/gene/?term=azo0728
azo0729	azo0729		azo0729	781195	781395	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RSc2830 of Ralstonia solanacearum of 53%25 (trembl:Q8XVK0). Has PF03884%2C Domain of unknown function (DUF329)%3BIPR005584%3BThe function of this short domain is unknown it contains four conserved cysteines and may therefore be involved in zinc binding. no TMHs. No signal peptide.	gene	gene738	http://www.ncbi.nlm.nih.gov/gene/?term=azo0729
azo0730	azo0730	yacF	yacF	781398	782153	-	conserved hypothetical protein	Hypothetical protein%2C yacF%2C 32%25 identitcal to SwissProt%3BP36680%2CQ8FL56. Has PF07072%2C Protein of unknown function (DUF1342)%3BIPR009777 %3BThis family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680. The function of this family is unknown. cobA: cob(I)alamin adenosyltransferase	gene	gene739	http://www.ncbi.nlm.nih.gov/gene/?term=azo0730
azo0731	azo0731	coaE	coaE	782235	782855	-	CoaE protein	Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase). Catalyzes the phosphorylation of the 3-hydroxyl group of dephosphocoenzyme A to form coenzyme A (By similarity). InterPro: Uncharacterized protein family UPF0038 TIGRFAM: TIGR00152: kinase putative%3B~High confidence in function and specificity	gene	gene740	http://www.ncbi.nlm.nih.gov/gene/?term=azo0731
azo0732	azo0732		azo0732	782852	783562	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rs03277 of R. solanacearum of 30%25 (TrEMBL:Q8Y2M5). No domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene741	http://www.ncbi.nlm.nih.gov/gene/?term=azo0732
azo0733	azo0733	baf	baf	783572	784363	-	probable Bvg accessory factor	Bvg accessory factor. Activates transcription of the pertussis toxin operon in a bvgAS-dependent manner. May interact with the alpha subunit of RNA polymerase. Similar to SWISSPROT: sprot|BAF_BORPE (29%25 Bordetella pertussis%2C bvg accessory factor baf or bp0097) InterPro: IPR004619 Baf. TIGRFAM: TIGR00671 transcriptional activator%2C putative%2C Baf family.%3B~High confidence in function and specificity	gene	gene742	http://www.ncbi.nlm.nih.gov/gene/?term=azo0733
azo0734	azo0734	birA	birA	784360	785088	-	biotin--[acetyl-CoA-carboxylase] ligase	BirA bifunctional protein [Includes: Biotin operon repressor%3B Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)]. birA acts both as a biotin-operon repressor and as the enzyme that synthesizes the corepressor%2C acetyl-coa:carbon- dioxide ligase. this protein also activates biotin to form biotinyl-5'-adenylate and transfers the biotin moiety to biotin-accepting proteins. InterPro: Biotin--acetyl-CoA-carboxylase ligase birA_ligase: biotin--acetyl-CoA-carboxyla%3B~Specificity unclear	gene	gene743	http://www.ncbi.nlm.nih.gov/gene/?term=azo0734
azo0735	azo0735	ntrC	ntrC	785250	786680	-	nitrogen regulation protein NR(I)	Nitrogen regulation protein NR(I)%2C%3B~High confidence in function and specificity	gene	gene744	http://www.ncbi.nlm.nih.gov/gene/?term=azo0735
azo0736	azo0736	ntrB	ntrB	786724	787797	-	nitrogen regulation protein NR(II)	Nitrogen regulation protein NR(II)%2C%3B~High confidence in function and specificity	gene	gene745	http://www.ncbi.nlm.nih.gov/gene/?term=azo0736
azo0737	azo0737		azo0737	787859	788335	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to cv3590 of C. violaceum of 39%25 (trembl|Q7NS37(SRS)) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene746	http://www.ncbi.nlm.nih.gov/gene/?term=azo0737
azo0738	azo0738	glnA	glnA	788464	789873	-	glutamine synthetase I	Glutamine synthetase I (GS) plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. Similar to pir|G83005 (70%25) and to pir|AJECQ (66%25). Pfam (PF00120): Glutamine synthetase%2C catalytic domain Pfam (PF03951): Glutamine synthetase%2C beta-Grasp domain%3B~High confidence in function and specificity	gene	gene747	http://www.ncbi.nlm.nih.gov/gene/?term=azo0738
azo0739	azo0739	czcD1	czcD1	790055	791269	-	putative cobalt-zinc-cadmium resistance protein	CzcD: Members of this family (TC 2.A.4) are integral membrane proteins that are found to increase tolerance to divalent metal ions such as cadmium%2C zinc%2Cand cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. (Slc30a subfamily). Similar to the cobalt-zinc-cadmium resistance protein CzcD (cation efflux system protein) from Alcaligenes eutrophus (Ralstonia eutropha). SWISSPROT:CZCD_ALCEU.P13512. InterPro:IPR002524%3B Cation_efflux.InterPro: Cation efflux family. Pfam:PF01545%3B Cation_efflux%3B 1. TIGRFAMs:TIGR01297%3B CDF%3B 1. TMHelix: 4.%3B~High confidence in function and specificity	gene	gene748	http://www.ncbi.nlm.nih.gov/gene/?term=azo0739
azo0740	azo0740		azo0740	791287	791739	+	conserved hypothetical sulphurtransferase protein	Similar to Rhodanese domain protein%2C a sulphurtransferase involved in cyanide detoxification. InterPro: Rhodanese/cdc25 fold%3B~Specificity unclear	gene	gene749	http://www.ncbi.nlm.nih.gov/gene/?term=azo0740
azo0741	azo0741	nadA	nadA	791814	792914	+	quinolinate synthetase	Quinolinate synthetase A. Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate. InterPro: Quinolinate synthetase A protein TIGRFAM: nadA: quinolinate synthetase complex%3B~High confidence in function and specificity	gene	gene750	http://www.ncbi.nlm.nih.gov/gene/?term=azo0741
azo0742	azo0742		azo0742	792936	793685	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rs04427 of R. solanacearum of 55%25 (trembl|Q8Y267). Pfam: Endonuclease/Exonuclease/phosphatase family (PF03372). Interpro: Endonuclease/Exonuclease/phosphatase family (IPR005135). no signal peptide. no TMHs	gene	gene751	http://www.ncbi.nlm.nih.gov/gene/?term=azo0742
azo0743	azo0743	cls1	cls1	793682	794839	+	putative cardiolipin synthetase	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. Affects resistance to the gyrase inhibitor novobiocin. Entry name: CLS_ECOLI Primary accession number P31071 InterPro IPR001736%3B PLD. Pfam PF00614%3B PLDc%3B 2 Identity:-28%25 Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene752	http://www.ncbi.nlm.nih.gov/gene/?term=azo0743
azo0744	azo0744		azo0744	794846	795355	-	conserved hypothetical protein	Protein yccU. TREMBL:Q982W3: 50%25 identity%2C 70%25 similarity. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases%2C malate and ATP-citrate ligases. InterPro:IPR003781%3B CoA_binding. Pfam: PF02629%3B CoA_binding FRU: PTS enzyme-IIB fructose permease No signal peptide. No transmembrane helices present.%3B~Function unclear	gene	gene753	http://www.ncbi.nlm.nih.gov/gene/?term=azo0744
azo0745	azo0745		azo0745	795366	796367	-	Glutamate-tRNA ligase	Putative glutamyl-tRNA synthetase-related protein%2C58%25 identity to TrEMBl%3B Q5P2J9%2C47%25 identity to TrEMBL%3B Q7NSJ1. Has PF00749%2C tRNA synthetases class I (E and Q)%2Ccatalytic domain.Other tRNA synthetase sub-families are too dis%3B~Specificity unclear	gene	gene754	http://www.ncbi.nlm.nih.gov/gene/?term=azo0745
azo0746	azo0746		azo0746	796481	798106	+	hypothetical membrane protein	Hypothetical membrane protein. Homology to la0834 of L. interrogans of 25%25 (trembl|Q8F7U9). InterPro: Dolichyl-phosphate-mannose-protein mannosyltransferase (IPR003342). Dolichyl-phosphate-mannose-protein mannosyltransferase proteins belong to the glycosyltransferase family 39 and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. Pfam: Dolichyl-phosphate-mannose-protein mannosyltransferase. signal peptide. 10 TMHs	gene	gene755	http://www.ncbi.nlm.nih.gov/gene/?term=azo0746
azo0747	azo0747		azo0747	798162	799442	+	conserved hypothetical secreted protein	40%25 GH_BNR. Pfam:PF02012%3B BNR%3B 2. TMHelix:1. Signal peptide: present.%3B~Function unclear	gene	gene756	http://www.ncbi.nlm.nih.gov/gene/?term=azo0747
azo0748	azo0748		azo0748	799936	800856	-	cellobiose phosphorylase	Probable cellobiose phosphorylase%2C 31%25 identity to TrEMBL%3BQ7NYW4. Has PF04794%2C YdjC-like protein%3BIPR006879%3B Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.%3B~Function unclear	gene	gene757	http://www.ncbi.nlm.nih.gov/gene/?term=azo0748
azo0749	azo0749		azo0749	800954	801982	+	conserved hypothetical glycosyl transferase	Conserved hypothetical glycosyl transferase. Homology to cc2889 of. C. crescentus (trembl|Q9A4E5). Pfam: Glycosyl transferase family 2(PF00535). Diverse family%2C transferring sugar from UDP-glucose%2C UDP-N-acetyl-galactosamine%2C GDP-mannose or CDP-abequose%2C to a range of substrates including cellulose%2C dolichol phosphate and teichoic acids. Interpro: Glycosyl transferase family 2 (IPR001173). no signal peptide. 2 TMHs.%3B~Conserved hypothetical protein	gene	gene758	http://www.ncbi.nlm.nih.gov/gene/?term=azo0749
azo0750	azo0750		azo0750	802057	803655	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. TREMBL:Q89QQ8: 34%25 identity This is a subfamily of bacterial binding-protein-dependent transport systems family%2C and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system InterPro: IPR000522%3B FecD. Pfam: PF01032%3B FecCD ncs1: NCS1 nucleoside transporter fam Nonsecretory protein with signal peptide probability 0.203 (Signal P predicted). TMHMM predicted 9 transmembrane helices.%3B~Function unclear	gene	gene759	http://www.ncbi.nlm.nih.gov/gene/?term=azo0750
azo0751	azo0751		azo0751	803652	804053	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA4820 of P. aeruginosa of 38%25 (trembl|Q9HUZ0(SRS)) Has PF04138%2C GtrA-like protein%3BIPR007267%3BMembers of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX)%2C but does not determine the specificity of glucosylation. Its function remains unknown%2C but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. no signal peptide 4 TMHs%3B~Conserved hypothetical protein	gene	gene760	http://www.ncbi.nlm.nih.gov/gene/?term=azo0751
azo0752	azo0752	ychF	ychF	804105	805196	-	conserved hypothetical protein	Probable GTP-binding protein ychF (ORF-3). InterPro: Conserved hypothetical protein 92 TIGR00092: conserved hypothetical prote%3B~High confidence in function and specificity	gene	gene761	http://www.ncbi.nlm.nih.gov/gene/?term=azo0752
azo0753	azo0753	pth	pth	805193	805849	-	Pth protein	Peptidyl-tRNA hydrolase (EC 3.1.1.29) . The natural substrate for this enzyme may be peptidyl- tRNAS which drop off the ribosome during protein synthesis.%3B~High confidence in function and specificity	gene	gene762	http://www.ncbi.nlm.nih.gov/gene/?term=azo0753
azo0754	azo0754	rplY	rplY	805889	806491	-	50S ribosomal protein L25	50S ribosomal protein L25. BINDS TO THE 5S RRNA%3B~High confidence in function and specificity	gene	gene763	http://www.ncbi.nlm.nih.gov/gene/?term=azo0754
azo0755	azo0755	prsA	prsA	806573	807523	-	Ribose-phosphate diphosphokinase	Ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase)%3B~High confidence in function and specificity	gene	gene764	http://www.ncbi.nlm.nih.gov/gene/?term=azo0755
azo0756	azo0756	ispE	ispE	807698	808546	-	probable 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	FUNCTION: Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. Phosphorylates isopentenyl phosphate at low rates. Also acts on isopentenol%2C and%2C much less efficiently%2C dimethylallyl alcohol. Dimethylallyl monophosphate does not serve as a substrate. CATALYTIC ACTIVITY: ATP + 4-(cytidine5'-diphospho)-2-C-methyl-D-erythritol %3D ADP + 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol. Entry name SWISSPROT:ISPE_ECOLI Prim. accession # P24209 Identities %3D 133/274 (48%25) InterPro IPR006204%3B GHMP_kinase. IPR004424%3B IspE. Pfam PF00288%3B GHMP_kinases%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.006 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene766	http://www.ncbi.nlm.nih.gov/gene/?term=azo0756
azo0757	azo0757	lolB	lolB	808543	809124	-	conserved hypothetical outer membrane lipoprotein	conserved hypothetical outer-membrane lipoprotein. Homology to lolB of C. violaceum of 32%25 (sprot|LOLB_CHRVO) Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the lolA protein (By similarity). Tigrfam: lolB: outer membrane lipoprotein LolB Pfam: outer membrane lipoprotein LolB signal peptide no TMHs%3B~Family membership	gene	gene767	http://www.ncbi.nlm.nih.gov/gene/?term=azo0757
azo0758	azo0758		azo0758	809121	810836	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to cv4061 of C. violaceum of 37%25 (trembl|Q7NQS6). InterPro: TPR repeat (IPR001440) signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene768	http://www.ncbi.nlm.nih.gov/gene/?term=azo0758
azo0759	azo0759	mutM	mutM	810989	811807	+	MutM protein	Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) (Fapy-DNA glycosylase). This enzyme may play a significant role in processes leading to recovery from mutagenesis and/or cell death by alkylating agents. Also involved in the go system responsible for removing an oxidatively damaged form of guanine (78-dihydro-8- oxoguanine %3D 7-OxoG) from DNA. Can also nick DNA at apurinic/apyrimidinic sites (AP sites) (By similarity). InterPro: Formamidopyrimidine-DNA glycolase%3B~High confidence in function and specificity	gene	gene769	http://www.ncbi.nlm.nih.gov/gene/?term=azo0759
azo0760	azo0760		azo0760	811931	813898	+	conserved hypothetical protein	TREMBL:Q8Y2D6:42%25 identity%2C 59%25 similarity Hypothetical protein in xynA 3region (ORF6) (Fragment). Pfam:dynamin_2 :Dynamin central region%3B FH2:Formin Homology 2 Domain surE: stationary-phase survival prote No transmembrane helices(TMHMM predicted)%3B~Function unclear	gene	gene770	http://www.ncbi.nlm.nih.gov/gene/?term=azo0760
azo0761	azo0761	fdx1	fdx1	813966	814223	-	probable ferredoxin	Probable ferredoxin. Homology to fdx of C. vinosum of 67%25 (sprot|FER_CHRVI). Ferredons are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~Family membership	gene	gene771	http://www.ncbi.nlm.nih.gov/gene/?term=azo0761
azo0762	azo0762	coaD	coaD	814240	814731	-	Pantetheine-phosphate adenylyltransferase	Pantetheine- phosphate adenylyltransferas (PPAT) reversibly transfers an adenylyl group from ATP to 4-phosphopantetheine yielding dephospho-CoA (dPCoA) and pyrophosphate (By similarity).%3B~High confidence in function and specificity	gene	gene772	http://www.ncbi.nlm.nih.gov/gene/?term=azo0762
azo0763	azo0763		azo0763	814728	815249	-	putative methylase	Putative methylase%3B~Family membership	gene	gene773	http://www.ncbi.nlm.nih.gov/gene/?term=azo0763
azo0764	azo0764		azo0764	815264	816616	-	probable Zn dependent peptidase	Hypothetical zinc protease-like protein y4wB. TREMBL:Q8Y2E8: 43%25 identity%3B 57%25 similarity. InterPro: Insulinase family (Peptidase family M16) InterPro:IPR001431%3B Peptidase_M16. IPR007863: Peptidase_M16_C. Pfam:PF00675%3B Peptidase_M16 (Insulinase)%3B homoserine_dh%3B aldehyde dehydrogenase%3B PF05193:Peptidase_M16_C%3B precor6x_red: precorrin-6x reductase TIGRFAM:folate/biopterin transporter SignalP predicted signal peptide and TMHMM predicted transmembrane helix%3B~Specificity unclear	gene	gene774	http://www.ncbi.nlm.nih.gov/gene/?term=azo0764
azo0765	azo0765		azo0765	816645	818111	-	probable Zn dependent peptidase	TREMBL:Q8Y2E9: 55%25 identity%2C 68%25 similarity. Hypothetical zinc protease y4wA. InterPro:IPR001431%3B Peptidase_M16. IPR007863: Peptidase_M16_C. cofactor:binds 1 zinc ion per subunit (by similarity). belongs to peptidase family m16. similarity:to y4wb. Pfam:PF00675%3B Peptidase_M16%3B 1. PF05193:Peptidase_M16_C TIGRFAM: uxuA SignalP predicted signal peptide and TMHMM predicted transmembrane helices menD: 2-succinyl-6-hydroxy-24-cyclohex%3B~Specificity unclear	gene	gene775	http://www.ncbi.nlm.nih.gov/gene/?term=azo0765
azo0766	azo0766	FtsY	FtsY	818232	819365	+	probable signal recognition particle-docing protein FtsY	Probable signal recognition particle-docing protein FtsY Homology to ftsY of C. violaceum of 65%25 (trembl|Q7NQD7) In E.coli%2C ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX%2C but its apparent function is as the signal recognition particle docking protein. Pfam: SRP54-type protein%2C helical bundle domain (PF02881)%3B SRP54-type protein%2C GTPase domain Tigrfam: ftsY: signal recognition particale-docking protein FtsY no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene776	http://www.ncbi.nlm.nih.gov/gene/?term=azo0766
azo0767	azo0767	FtsE	FtsE	819362	820021	+	probable cell division ATP-binding protein FtsE	High confidence in function and specificity	gene	gene777	http://www.ncbi.nlm.nih.gov/gene/?term=azo0767
azo0768	azo0768	FtsX	FtsX	820018	820914	+	putative cell division protein FtsX	Putative cell division protein FtsX. Homology to ftsX of E. coli of 33%25 (sprot|FTSX_ECOLI). FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. Might be a permease. Tigrfam: ftsX: cell division ABC transporter protein probable signal peptide probable 4 TMHs%3B~Family membership	gene	gene778	http://www.ncbi.nlm.nih.gov/gene/?term=azo0768
azo0769	azo0769	ahpC	ahpC	821109	821672	+	alkyl hydroperoxide reductase subunit C	Alkyl hydroperoxide reductase subunit C. Homology to aphC of X. campestris of 84%25 (trembl|O06464). Directly reduces organic hydroperoxides in its reduced dithiol form. InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (IPR000866) Pfam: AhpC/TSA family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene779	http://www.ncbi.nlm.nih.gov/gene/?term=azo0769
azo0770	azo0770	ahpF	ahpF	821802	823355	+	alkyl hydroperoxide reductase subunit F	Alkyl hydroperoxide reductase subunit F. Homology to aphF of X. campestris of 71%25 (sprot|AHPF_XANCH) Serves to protect the cell against DNA damage by alkyl hydroperoxides. It can use either NADH or NADPH as electron donor for direct reduction of redox dyes or of alkyl hydroperoxides when combined with the AHPC protein. Pfam: Pyridine nucleotide-disulphide oxidareductase no TMHs%3B~High confidence in function and specificity	gene	gene780	http://www.ncbi.nlm.nih.gov/gene/?term=azo0770
azo0771	azo0771		azo0771	824754	826058	-	probable C-5 cytosine-specific DNA methylase	Probable C-5 cytosine-specific DNA methylase InterPro: C-5 cytosine-specific DNA methylase	gene	gene781	http://www.ncbi.nlm.nih.gov/gene/?term=azo0771
azo0772	azo0772	rnhA1	rnhA1	826594	827043	-	RnhA1 protein	Ribonuclease H (EC 3.1.26.4) (RNase H). This enzyme is an endonuclease that degrades the RNA of RNA-DNA hybrids specifically (By similarity). InterPro: RNase H%3B~High confidence in function and specificity	gene	gene782	http://www.ncbi.nlm.nih.gov/gene/?term=azo0772
azo0773	azo0773		azo0773	827040	827819	-	Hypothetical protein	Hypothetical protein %2C 32%25 identity to TrEMBL%3BQ8NZP4 No domains%2C repeats%2C motifs or features present.	gene	gene783	http://www.ncbi.nlm.nih.gov/gene/?term=azo0773
azo0774	azo0774		azo0774	828127	828822	-	hypothetical protein		gene	gene784	http://www.ncbi.nlm.nih.gov/gene/?term=azo0774
azo0775	azo0775		azo0775	829733	830302	-	putative resolvase	Putative DNA-invertase from lambdoid prophage Rac. InterPro: Site-specific recombinase Pfam: Resolvase%3B~Family membership	gene	gene785	http://www.ncbi.nlm.nih.gov/gene/?term=azo0775
azo0776	azo0776		azo0776	830685	832355	-	putative integrase	Family membership	gene	gene786	http://www.ncbi.nlm.nih.gov/gene/?term=azo0776
azo0777	azo0777		azo0777	832729	833076	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene788	http://www.ncbi.nlm.nih.gov/gene/?term=azo0777
azo0778	azo0778		azo0778	833091	834440	+	Conserved Hypothetical protein	Conserved Hypothetical protein%2C 72%25 idetity (82%25 similarity) to TrEMBL%3BQ7NQI8.TrEMBL%3BQ8Y206(71%25 Identity). Has Elp3%2C Elongator protein 3%2C MiaB family%2C Radical SAM%3BThis superfamily contains MoaA%2C NifB%2C PqqE%2Ccoproporphyrinogen III oxidase%2C biotin synthase and MiaB families%2C and includes a representative in the eukaryotic elongator subunit%2C Elp-3. Some members of the family are methyltransferases.SMART%3BSM00729. Has PF01938%2C TRAM domain%3BIPR002792%3B This small domain has no known function. However it may perform a nucleic acid binding role. Has PF00919%3B Uncharacterized protein family UPF0004%3BIPR005839%3BThis family is the N terminal half of the Prosite family. The C-terminal half has been shown to be related to MiaB proteins. This domain is a nearly always found in conjunction with Radical_SAM and TRAM although its function is uncertain.%3B~Family membership	gene	gene789	http://www.ncbi.nlm.nih.gov/gene/?term=azo0778
azo0779	azo0779	ybeZ	ybeZ	834440	835423	+	PhoH-like protein	PhoH-like protein%2C%3B~High confidence in function and specificity	gene	gene790	http://www.ncbi.nlm.nih.gov/gene/?term=azo0779
azo0780	azo0780		azo0780	835416	836174	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rso4939 of R. solanacearum of 40%25 (rso:RS04939). Pfam: Uncharacterized protein family UPF005 Tigrfam: TIGR00043: conserved hypothetical protein no signal peptide no TMHs%3B~Family membership	gene	gene791	http://www.ncbi.nlm.nih.gov/gene/?term=azo0780
azo0781	azo0781	corC	corC	836270	837115	+	putative magnesium and cobalt efflux protein	Magnesium and cobalt efflux protein corC. Plays a role in the transport of magnesium and cobalt ions. Also mediates transport of cobalt and nickel. 43%25 CBS_domain.IPR005170%3B CorC_transpt-asc. Pfam:PF00571%3B CBS%3B 2.PF03471%3B CorC_HlyC%3B 1. Belongs to the UPF0053 family.Contains 2 cbs domains.%3B~High confidence in function and specificity	gene	gene792	http://www.ncbi.nlm.nih.gov/gene/?term=azo0781
azo0782	azo0782	lnt	lnt	837115	838629	+	putative apolipoprotein N-acyltransferase	Putative apolipoprotein N-acyltransferase. Homology to cutE of E. coli of 36%25 (sprot|LNT_ECOLI). Transfers the fatty acyl group on membrane lipoproteins. InterPro: Apolipoprotein N-acyltransferase (IPR004563)%3B Carbon-nitrogen hydrolase (IPR003010) Tigrfam: lnt: apolipoprotein N-acyltransferase Pfam: Carbon-nitrogen hydrolase signal peptide 6 TMHs%3B~High confidence in function and specificity	gene	gene793	http://www.ncbi.nlm.nih.gov/gene/?term=azo0782
azo0783	azo0783		azo0783	838754	839893	+	membrane fusion protein	HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q7NHP0 (27%25 identity)%3B SignalP predicting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership	gene	gene794	http://www.ncbi.nlm.nih.gov/gene/?term=azo0783
azo0784	azo0784		azo0784	839904	842957	+	RND efflux transporter%2C permease protein	AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q9A3K6 (38%25 identity)%3B TREMBL:Q89XF8 (40%25 identity). InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear	gene	gene795	http://www.ncbi.nlm.nih.gov/gene/?term=azo0784
azo0785	azo0785		azo0785	843084	844010	+	Glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) (Glycine--tRNA ligase alpha chain) (GlyRS).%3B~High confidence in function and specificity	gene	gene796	http://www.ncbi.nlm.nih.gov/gene/?term=azo0785
azo0786	azo0786	glyS	glyS	844007	846094	+	Glycyl-tRNA synthetase%2C beta chain	Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) (Glycine--tRNA ligase beta chain) (GlyRS).%3B~High confidence in function and specificity	gene	gene797	http://www.ncbi.nlm.nih.gov/gene/?term=azo0786
azo0787	azo0787		azo0787	846144	846677	+	putative haloacid dehalogenase-like hydrolase	Putative haloacid dehalogenase-like hydrolase%2C 60%25 Identity to TrEMBL%3BQ7W4K4%2CQ7WG29%2CQ7W0Q4. Has PF00702%2Chaloacid dehalogenase-like hydrolase%3B IPR005834 Dehal_like_hydro%3B This family are structurally different from the alpha/ beta hydrolase family (Abhydrolase_1). This family includes L-2-haloacid dehalogenase%2C epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle%2C which is the least well conserved region of the alignment%2C between residues 16 and 96 of P24069. The rest of the fold is composed of the core alpha/beta domain.	gene	gene798	http://www.ncbi.nlm.nih.gov/gene/?term=azo0787
azo0788	azo0788		azo0788	846695	847453	+	probable acyltransferase	Acyl-[acyl-carrier protein] can also acts as acyl donor.The animal enzyme is specific for the transfer of unsaturated fatty acyl groups. Catalytic Activity:-Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate %3D CoA + 1%2C2-diacyl-sn-glycerol 3-phosphate. Entry name TREMBL:Q82VB2 Prim. accession # Q82VB2 InterPro:-IPR002123%3B Acyltransferase. Pfam:- PF01553%3B Acyltransferase%3B 1. Identity:- 56%25 Prediction: Signal peptide Signal peptide probability: 0.907 Number of predicted TMHs: 1%3B~Family membership	gene	gene799	http://www.ncbi.nlm.nih.gov/gene/?term=azo0788
azo0789	azo0789		azo0789	847542	848102	-	probable phasin	Probable phasin. Homology to p8 of Sphingomonas sp. A1 of 69%25 (gi|51773776|dbj|BAD38885.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.%3B~Family membership	gene	gene800	http://www.ncbi.nlm.nih.gov/gene/?term=azo0789
azo0790	azo0790	paaF1	paaF1	848399	849175	-	probable enoyl-CoA hydratase	COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). CATALYTIC ACTIVITY: (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O. Entry name :- SWISSPROT:PAAF_ECOLI Prim. accession # P76082 InterPro :- IPR001753%3B EnCoA_hydrtse. Pfam :- PF00378%3B ECH%3B 1. Identities %3D 109/250 (43%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene801	http://www.ncbi.nlm.nih.gov/gene/?term=azo0790
azo0791	azo0791		azo0791	849202	849774	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc0410 of R. solanacearum of 42%25 (trembl|Q8Y2C6(SRS)) Pfam: OstA-like protein This family of proteins are mostly uncharacterised. However the family does include E. coli OstA P31554 that has been characterised as an organic solvent tolerance protein. signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene802	http://www.ncbi.nlm.nih.gov/gene/?term=azo0791
azo0792	azo0792		azo0792	849771	850349	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA1318 of Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA1318(KEGG)). Has PF06835%2C Protein of unknown function (DUF1239)%3BIPR010664%3BThis family consists of several hypothetical bacterial proteins of around 190 residues in length. The function of this family is unknown. No TMHs. Signal peptide.%3B~Conserved hypothetical protein	gene	gene803	http://www.ncbi.nlm.nih.gov/gene/?term=azo0792
azo0793	azo0793		azo0793	850359	850880	-	probable phosphatase (HAD superfamily)	Catalyzes the hydrolysis of KDO 8-P to KDO and inorganic phosphate TREMBL:Q9JSU3: 43%25 identity%2C 59%25 similarity InterPro: IPR006549%3B HAD-SF-IIIA. IPR005834%3B Hydrolase. IPR008230%3B Sugar_Ptase. IPR010023%3B YrbI_phosphatas. Pfam: PF00702%3B Hydrolase TIGR00099: conserved hypothetical prote Absence of transmembrane helices.%3B~Specificity unclear	gene	gene804	http://www.ncbi.nlm.nih.gov/gene/?term=azo0793
azo0794	azo0794		azo0794	850880	851875	-	sugar-phosphate isomerase	Arabinose 5-phosphate isomerase (EC 5.3.1.13). Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate (By similarity). InterPro: KpsF/GutQ family protein kpsF: KpsF/GutQ family protein%3B~High confidence in function and specificity	gene	gene805	http://www.ncbi.nlm.nih.gov/gene/?term=azo0794
azo0795	azo0795		azo0795	852075	854042	+	putative glutathione-regulated potassium-efflux system protein	Probable glutathione-regulated potassium-efflux system protein (K(+)/H(+) antiporter). Transport system that facilitate potassium-efflux possibly by potassium-proton antiport. 50%25 Na_H_porter.IPR006037%3B TrkAC.IPR003148%3B TrkA_N. Pfam: PF00999%3B Na_H_Exchanger%3B 1.PF02080%3B TrkA_C%3B 1.PF02254%3B TrkA_N%3B 1. TMhelix: 11.%3B~High confidence in function and specificity	gene	gene806	http://www.ncbi.nlm.nih.gov/gene/?term=azo0795
azo0796	azo0796		azo0796	854050	854697	-	conserved hypothetical membrane protein	Conserved hypothetical membrabe protein. Homology to Mflag03002444 of Methylobacillus flagellatus of 48%25 (gi|46120631|ref|ZP_00201765.1|(NBCI ENTREZ)). no domains predicted. No signal peptide. 1 TMHs	gene	gene807	http://www.ncbi.nlm.nih.gov/gene/?term=azo0796
azo0797	azo0797		azo0797	854732	855430	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03002886 of Dechloromonas aromatica of 31%25 (gi|53729825|ref|ZP_00150246.2|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide.	gene	gene808	http://www.ncbi.nlm.nih.gov/gene/?term=azo0797
azo0798	azo0798		azo0798	855418	856656	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene809	http://www.ncbi.nlm.nih.gov/gene/?term=azo0798
azo0799	azo0799		azo0799	856671	857057	-	hypothetical secreted protein	Hypothetical secreted protein. no homology with the data bank. no domains predicted. signal peptide. no TMHS	gene	gene810	http://www.ncbi.nlm.nih.gov/gene/?term=azo0799
azo0800	azo0800		azo0800	857054	857644	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene811	http://www.ncbi.nlm.nih.gov/gene/?term=azo0800
azo0801	azo0801		azo0801	857641	859065	-	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide present. 1 TMH present.	gene	gene812	http://www.ncbi.nlm.nih.gov/gene/?term=azo0801
azo0802	azo0802	gspF1	gspF1	859072	860277	-	general secretion pathway protein F	Type II secretory pathway component F%2C%3B~Specificity unclear	gene	gene813	http://www.ncbi.nlm.nih.gov/gene/?term=azo0802
azo0803	azo0803	gspE1	gspE1	860274	861974	-	general secretion pathway protein E	Bacterial type II secretion system protein E%2C%3B~Specificity unclear	gene	gene814	http://www.ncbi.nlm.nih.gov/gene/?term=azo0803
azo0804	azo0804		azo0804	861980	862615	-	hypothetical protein	Hypothetical protein. No homology to a protein of similar size. No domains predicted. No signal peptide. No TMHs	gene	gene815	http://www.ncbi.nlm.nih.gov/gene/?term=azo0804
azo0805	azo0805	gspD1	gspD1	862681	864423	-	general secretion pathway protein D	Type II secretory pathway component D%2C weak similarity to SWISSPROT:HOFQ_ECOLI (18%25). A number of proteins are involved in the general secretion pathway (GSP)%3B one of these is known as protein D (GSPD protein). Protein D is involved in the type II general secretion pathway within Gram-negative bacteria%2C a signal sequence-dependent process responsible for protein export. InterPro (PF00263): General (type II) secretion pathway (GSP) D protein%3B~Specificity unclear	gene	gene816	http://www.ncbi.nlm.nih.gov/gene/?term=azo0805
azo0806	azo0806		azo0806	864497	865330	+	conserved hypothetical ABC transporter ATP-binding protein	Conserved hypothetical ABC transporter ATP-binding protein. Homology to rs01335 of R. solanacearum of 67%25 (trembl|Q8XV69). ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. They are minimally composed of four domains%2C with two transmembrane domains (TMDs) responsible for allocrite binding and transport and two nucleotide-binding domains (NBDs) responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Both NBDs are capable of ATP hydrolysis. Pfam: ABC transporter (PF00005). No signal peptide. No TMHs%3B~Family membership	gene	gene817	http://www.ncbi.nlm.nih.gov/gene/?term=azo0806
azo0807	azo0807		azo0807	865327	866118	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein Similar to TREMBL:Q7P0W7 (65%25 identity)%3B TREMBL:Q82SF6 (65%25 identity)%3B TREMBL:Q7VSZ9 (57%25 identity). InterPro (IPR003453): Domain of unknown function DUF140. Pfam (PF02405): Domain of unknown function DUF140. TIGRFAM (TIGR00056): Conserved hypothetical protein. TMHMM reporting five transmembrane helices.	gene	gene818	http://www.ncbi.nlm.nih.gov/gene/?term=azo0807
azo0808	azo0808		azo0808	866118	866591	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Similar to TREMBL:Q8XV71 (59%25 identity)%3B TREMBL:Q82SF7 (55%25 identity)%3B TREMBL:Q7VSZ8 (55%25 identity). Pfam (PF02470): mce related protein. This family of proteins contains the mce (mycobacterial cell entry) proteins from Mycobacterium tuberculosis. The archetype (Rv0169)%2C was isolated as being necessary for colonisation of%2C and survival within%2Cthe macrophage. This family contains proteins of unknown function from other bacteria. SignalP reoprting signal peptide. TMH in signal peptide%3B~Family membership	gene	gene819	http://www.ncbi.nlm.nih.gov/gene/?term=azo0808
azo0809	azo0809	vacJ	vacJ	866632	867492	+	putative surface lipoprotein	Putative surface lipoprotein. Homology to vacJ of S. flexneri of 26%25 (sprot|VACJ_SHIFL) Required for intercellular spreading. Pfam: VacJ like lipoprotein signal peptide no TMHs%3B~Family membership	gene	gene820	http://www.ncbi.nlm.nih.gov/gene/?term=azo0809
azo0810	azo0810		azo0810	867498	868145	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Similar to TREMBL:Q82SF8 (54%25 identity)%3B TREMBL:Q8XV73 (42%25 identity)%3B TREMBL:Q7VSZ6 (40%25 identity). SignalP reporting signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene821	http://www.ncbi.nlm.nih.gov/gene/?term=azo0810
azo0811	azo0811		azo0811	868216	868497	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc2957 of R. solanacearum of 42%25 (trembl|Q8XV74). Pfam: STAS domain The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. no signal peptide no TMHs	gene	gene822	http://www.ncbi.nlm.nih.gov/gene/?term=azo0811
azo0812	azo0812		azo0812	868505	869401	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q7P0X8 (62%25 identity)%3B TREMBL:Q82SG0 (58%25 identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003439): ABC transporter. Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership	gene	gene823	http://www.ncbi.nlm.nih.gov/gene/?term=azo0812
azo0813	azo0813		azo0813	869394	870194	+	ABC-2 type transporter permease protein	Similar to TREMBL:Q8XV76 (69%25 identity)%3B TREMBL:Q7P0X7 (66%25 identity)%3B TREMBL:Q82SG1 (64%25 identity). InterPro (IPR000412): ABC transporter%2C family 2. Pfam (PF01061): ABC-2 type transporter. TMHMM reporting seven transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Specificity unclear	gene	gene824	http://www.ncbi.nlm.nih.gov/gene/?term=azo0813
azo0814	azo0814		azo0814	870223	870480	+	conserved hypothetical BolA-like protein	Conserved hypothetical BolA-like protein. Homology to ne2377 of N. europaea of 47%25 (trembl|Q82SG2). InterPro: BolA-like protein This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Pfam: BolA-like binding protein no signal peptide no TMHs%3B~Function unclear	gene	gene825	http://www.ncbi.nlm.nih.gov/gene/?term=azo0814
azo0815	azo0815	murA	murA	870517	871767	+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT). Cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine (By similarity). tim: triosephosphate isomerase%3B~High confidence in function and specificity	gene	gene826	http://www.ncbi.nlm.nih.gov/gene/?term=azo0815
azo0816	azo0816	rnk	rnk	871799	872206	-	putative regulator of nucleoside diphosphate kinase	Regulator of nucleoside diphosphate kinase. RNK AND SSPA CAN FUNCTIONALLY REPLACE P.AERUGINOSA ALGINATE REGULATORY GENE ALGR2. 49%25 1.%3B~High confidence in function and specificity	gene	gene827	http://www.ncbi.nlm.nih.gov/gene/?term=azo0816
azo0817	azo0817	hisG	hisG	872316	872990	+	HisG protein	ATP phosphoribosyltransferase%2C%3B~High confidence in function and specificity	gene	gene828	http://www.ncbi.nlm.nih.gov/gene/?term=azo0817
azo0818	azo0818	hisD	hisD	872987	874297	+	HisD protein	Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria%2C fungi%2C and plants%2C the four-electron oxidation of L-histidinol to histidine. Similar to sprot|HISX_PSEAE (66%25) and to sprot|HISX_ECOLI (41%25). Pfam (PF00815): Histidinol dehydrogenase TIGRfam (TIGR00069): Histidinol dehydrogenase%3B~High confidence in function and specificity	gene	gene829	http://www.ncbi.nlm.nih.gov/gene/?term=azo0818
azo0819	azo0819	aspC	aspC	874352	875542	-	probable aminotransferase	Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes%2Csuch as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity%2C these various enzymes can be grouped into subfamilies%3B these sequences are defined by the aminotransferases class-I pyridoxal-phosphate attachment site signature%2C which contains the lysine residue involved in pyridoxal-phosphate binding. Similar to pir|D83057 (55%25) and to trembl|Q8P544 (55%25). Pfam (PF00155): Aminotransferases class-I pyridoxal-phosphate-binding site HTH reporting nucleic acid binding motif.%3B~Specificity unclear	gene	gene830	http://www.ncbi.nlm.nih.gov/gene/?term=azo0819
azo0820	azo0820	pckG	pckG	875655	877499	-	probable phosphoenolpyruvate carboxykinase	Probable phosphoenolpyruvate carboxykinase. Homology to pckG of M. smegmatis of 60%25 (sprot|PPCK_MYCSM). Phosphoenolpyruvate carboxykinase (GTP) (EC: 4.1.1.32) (PEPCK) [1] catalyzes the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate while hydrolyzing GTP: GTP + oxaloacetate %3D GDP + phosphoenolpyruvate + CO2.This is a rate limiting step in gluconeogenesis (the biosynthesis of glucose). InterPro: Phosphoenolpyruvate carboxykinase (GTP)(IPR008209) Pfam: Phosphoenolpyruvate carboxykinase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene831	http://www.ncbi.nlm.nih.gov/gene/?term=azo0820
azo0821	azo0821	maeB1	maeB1	877831	880107	+	probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)	Probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) (EC 1.1.1.40) (NADP-ME). Homology to dme of S. meliloti of 60%25 (sprot|MAO1_RHIME). Required for symbiotic nitrogen fixation. Plays a key role in the conversion of malate to acetyl-CoA for efficient tricarboxylic acid cycle function in nitrogen-fixating bacteria. Tigrfam: pta: phosphotransacetylase Pfam: Malic enzyme%3B Phosphate acetyl/butaryltransferase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene832	http://www.ncbi.nlm.nih.gov/gene/?term=azo0821
azo0822	azo0822		azo0822	880162	881298	+	conserved hypothetical protein	Probable Hypothetical UPF0028 family protein YML059C. TREMBL:Q82SM1: 50%25 identity%2C 68%25 similariry InterPro:IPR002641%3B Patatin. Pfam:PF01734%3B Patatin bioF: 8-amino-7-oxononanoate synthase Signal peptide present (SinalP predicted) TMHMM predicted TMH's%3B~Function unclear	gene	gene833	http://www.ncbi.nlm.nih.gov/gene/?term=azo0822
azo0823	azo0823	pbpG	pbpG	881699	882541	+	D-alanyl-D-alanine carboxypeptidase	Penicillin-binding protein 5 precursor (PBP-5) (D-alanyl-D-alanine- endopeptidase) (DD-endopeptidase).%3B~High confidence in function and specificity	gene	gene834	http://www.ncbi.nlm.nih.gov/gene/?term=azo0823
azo0824	azo0824	allR	allR	882604	883407	-	probable negative regulator of allantoin and glyoxylate utilization operons	Probable negative regulator of allantoin and glyoxylate utilization operons%2C%3B~High confidence in function and specificity	gene	gene835	http://www.ncbi.nlm.nih.gov/gene/?term=azo0824
azo0825	azo0825		azo0825	883506	883727	+	hypothetical protein	Hypothetical protein. No homology to the data bank. No domains predicted. No signal peptide. No TMHs	gene	gene836	http://www.ncbi.nlm.nih.gov/gene/?term=azo0825
azo0826	azo0826		azo0826	883724	884674	+	glycerate dehydrogenase	Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent hydroxypyruvate reductase) (HPR) (GDH) (Hydroxypyruvate dehydrogenase) (Glyoxylate reductase) (HPR-A). PLAYS A CENTRAL ROLE IN ASSIMILATION OF CARBON. IT CONVERTS HYDROXYPYRUVATE TO GLYCERATE AS A KEY STEP IN THE SERINE CYCLE AND MAY ALSO PLAY AN IMPORTANT ROLE IN C2 REACTIONS BY INTERCONVERTING GLYOXYLATE AND GLYCOLATE.%3B~Specificity unclear	gene	gene837	http://www.ncbi.nlm.nih.gov/gene/?term=azo0826
azo0827	azo0827		azo0827	884876	886135	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ORF428 of Roseateles depolymerans of 64%25 (tremble:BAB1967) Has PF07399:(IPR009978)Protein of unknown function (DUF1504)%3B This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.%3B~Conserved hypothetical protein	gene	gene838	http://www.ncbi.nlm.nih.gov/gene/?term=azo0827
azo0828	azo0828		azo0828	886288	887790	+	pseudouridylate synthase	Putative RNA pseudouridylate synthase. Homology with hits in the database only for the first half of protein. Has PF00849%2C RNA pseudouridylate synthase%3B IPR006145%2C PseudoU_synth%3B Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD P33643%2C a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA. Has SMART%3BSM00363%2C S4 RNA-binding domain%3BIPR002942%3BThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4%2C eukaryotic ribosomal S9%2C two families of pseudouridine synthases%2C a novel family of predicted RNA methylases%2C a yeast protein containing a pseudouridine synthetase and a deaminase domain%2C bacterial tyrosyl-tRNA synthetases%2C and a number of uncharacterized%2C small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.%3B~Family membership	gene	gene839	http://www.ncbi.nlm.nih.gov/gene/?term=azo0828
azo0829	azo0829	nuoB1	nuoB1	887858	888337	-	conserved hypothetical NADH-quinone oxidoreductase chain B	Conderved hypothetical NADH-quinone oxidoreductase chain B. Homology to nuoB of C. violaceum of 77%25 (trembl|Q7NUE5). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). Pfam: NADH ubiquinone oxidoreductase%2C 20 kd no signal peptide no TMHs%3B~Family membership	gene	gene840	http://www.ncbi.nlm.nih.gov/gene/?term=azo0829
azo0830	azo0830		azo0830	888370	889254	-	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Conserved hypothetical protein	gene	gene841	http://www.ncbi.nlm.nih.gov/gene/?term=azo0830
azo0831	azo0831		azo0831	889332	889562	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03000467 of Dechloromonas aromatica of 50%25 (gi|41725519|ref|ZP_00152277.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene842	http://www.ncbi.nlm.nih.gov/gene/?term=azo0831
azo0832	azo0832		azo0832	890060	891259	-	ABC transporter permease protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8DJ46 (29%25 identity)%3B TREMBL:Q8YZK5 (29%25 identity). InterPro (IPR003838): Protein of unknown function DUF214. Pfam (DUF214): Predicted permease. TMHMM reporting four transmembrane helices. TC (3.A.1.122.): The Macrolide Exporter (MacB) Family.%3B~Specificity unclear	gene	gene843	http://www.ncbi.nlm.nih.gov/gene/?term=azo0832
azo0833	azo0833		azo0833	891269	892477	-	ABC transporter permease protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8YZK5 (28%25 identity)%3B TREMBL:Q8DJ46 (29%25 identity). Pfam (DUF214): Predicted permease. TMHMM reporting five transmembrane helices. TC (3.A.1.122.): The Macrolide Exporter (MacB) Family.%3B~Specificity unclear	gene	gene844	http://www.ncbi.nlm.nih.gov/gene/?term=azo0833
azo0834	azo0834		azo0834	892474	893181	-	ABC transporter ATP-binding protein	Putative efflux transporter for macrolide antibiotics (MacB-family). Acts in conjunction with MacA. Similar to TREMBL:Q82W68 (59%25 identity)%3B TREMBL:Q8RAL4 (46%25 identity)%3B SWISSPROT:P75831 (41%25 identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter. TC (3.A.1.122): The Macrolide Exporter (MacB) Family.%3B~Family membership	gene	gene845	http://www.ncbi.nlm.nih.gov/gene/?term=azo0834
azo0835	azo0835		azo0835	893195	894343	-	membrane fusion protein	The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C%3B~Family membership	gene	gene846	http://www.ncbi.nlm.nih.gov/gene/?term=azo0835
azo0836	azo0836	glnS	glnS	894555	896288	-	glutaminyl-tRNA synthetase	Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA ligase) (GlnRS). glnS: glutaminyl-tRNA synthetase%3B~High confidence in function and specificity	gene	gene847	http://www.ncbi.nlm.nih.gov/gene/?term=azo0836
azo0837	azo0837		azo0837	896453	896836	+	conserved hypothetical CrcB family protein	Conserved hypothetical crcB family protein. Homology to ebA4067 of Azoarcus sp. EbN1 of 65%25 (gnl|keqq|eba:ebA4067(KEGG)). InterPro: CRCB protein. CRCB is a putative integral membrane protein possibly involved in chromosome condensation. Over expression in E. Coli also leads to camphor resistance. signal peptide. 2 TMHs%3B~Family membership	gene	gene848	http://www.ncbi.nlm.nih.gov/gene/?term=azo0837
azo0838	azo0838		azo0838	896956	897630	+	conserved hypothetical outer membrane protein	Conserved hypothetical puter membrane protein Homology to cv1891 of c. violaceum of 64%25 (trembl|Q7NWT8) InterPro: Bacterial outer membrane protein (IPR006664) Pfam: OmpA family signal peptide 2 TMHs%3B~Family membership	gene	gene849	http://www.ncbi.nlm.nih.gov/gene/?term=azo0838
azo0839	azo0839		azo0839	897685	900981	-	SWI/SNF family helicase	SWI/SNF family helicase Pfam: Helicase conserved C-terminal domain%3B~Specificity unclear	gene	gene850	http://www.ncbi.nlm.nih.gov/gene/?term=azo0839
azo0840	azo0840	thiC	thiC	901163	903079	-	thiamine biosynthesis protein	Thiamine biosynthesis protein thiC. Required for the synthesis of the hydromethylpyrimidine (HMP) moiety of thiamine (4-amino-2-methyl-5- hydroxymethylpyrimidine) (By similarity). TIGRFAM: thiC: thiamine biosynthesis protein ThiC%3B~High confidence in function and specificity	gene	gene851	http://www.ncbi.nlm.nih.gov/gene/?term=azo0840
azo0841	azo0841	thiD1	thiD1	903169	904023	-	phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate kinase) (HMP-P kinase). CATALYZES THE PHOSPHORYLATION OF HMP-P TO HMP-PP. TIGRFAM: HMP-P_kinase: phosphomethylpyrimidine kinase%3B~High confidence in function and specificity	gene	gene852	http://www.ncbi.nlm.nih.gov/gene/?term=azo0841
azo0842	azo0842	ecaA	ecaA	904277	905893	+	putative carbonic anhydrase precursor	Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase).Involved in the reversible hydration of carbon dioxide. 40%25 Euk_COanhd.IPR000437%3B Prok_lipoprot_S.IPR006311%3BTat. InterPro: belongs to the eukaryotic-type carbonic anhydrase family. Pfam:PF00194%3B carb_anhydrase%3B 1. TIGRFAMs:TIGR01409%3B TAT_signal_seq%3B 1. Signal peptide present.%3B~High confidence in function and specificity	gene	gene853	http://www.ncbi.nlm.nih.gov/gene/?term=azo0842
azo0843	azo0843		azo0843	905906	907309	-	conserved hypothetical transcriptional regulator	Conserved hypothetical transcriptional regulator. Homology to rsc0989 of r. solanacearum of 47%25 (CAD14691). Pfam: Bacterial regulatory proteins%2C gntR family%3B Aminotransferase class I and II no signal peptide no TMHs bioF: 8-amino-7-oxononanoate synthase%3B~Specificity unclear	gene	gene854	http://www.ncbi.nlm.nih.gov/gene/?term=azo0843
azo0844	azo0844		azo0844	907471	907926	+	hypothetical secreted protein.	Hypothetical secreted protein. No homology to the data base. No domain predicted. No TMHs. Signal peptide.	gene	gene855	http://www.ncbi.nlm.nih.gov/gene/?term=azo0844
azo0845	azo0845		azo0845	908009	908686	+	conserved hypothetical transcriptional regulator	Conserved hypothetical transcriptional regulator. Homology to RSc0698 of alstonia solanacearum of 48%25 (gnl|keqq|rso:RS01603(KEGG)). InterPro: IPR001647 HTH_TetR. Pfam: PF00440 Bacterial regulatory proteins%2CtetR family. HTH reporting nucleic acid binding motif. No signal peptide. No TMHs.%3B~Conserved hypothetical protein	gene	gene856	http://www.ncbi.nlm.nih.gov/gene/?term=azo0845
azo0846	azo0846		azo0846	908683	909771	+	membrane fusion protein	Similar to TREMBL:Q7NR61 (35%25 identity)%3B TREMBL:Q8XYV3 (33%25 identity)%3B TREMBL:Q88MQ4 (32%25 identity). InterPro (IPR006143): Secretion protein HlyD. SignalP predicting signal peptide. TC (2.A.6.1): The Heavy Metal Efflux (HME) Family.%3B~Family membership	gene	gene857	http://www.ncbi.nlm.nih.gov/gene/?term=azo0846
azo0847	azo0847		azo0847	909768	912986	+	RND efflux transporter%2C permease protein	AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q9A7D5 (35%25 identity)%3B TREMBL:Q9HXW4 (55%25 identity). Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear	gene	gene858	http://www.ncbi.nlm.nih.gov/gene/?term=azo0847
azo0848	azo0848	pcm1	pcm1	913062	913715	+	putative protein-L-isoaspartate O-methyltransferase	Putative protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (By similarity). InterPro: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (IPR000682)%2C SAM binding motif (IPR000051) Tigrfam: pimt: protein-L-isoaspartate O-methyltransfase Pfam: Protein-L-isoaspartate (D-aspartate) O-methyltransferase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene859	http://www.ncbi.nlm.nih.gov/gene/?term=azo0848
azo0849	azo0849		azo0849	913724	914047	+	conserved hypothetical sulfurtransferase protein	Putative rhodanese-related sulfurtransferase. TIGR:NMB1884. InterPro:IPR001763%3B Rhodanese-like. InterPro: Rhodanese/cdc25 fold. Pfam:PF00581%3B Rhodanese%3B 1.%3B~Function unclear	gene	gene860	http://www.ncbi.nlm.nih.gov/gene/?term=azo0849
azo0850	azo0850	tolC	tolC	914066	915382	+	putative outer membrane efflux protein	Putative outer membrane effluxe protein protein. Homology to tolC from E. coli of 33%25. The OEP family (outer membreane effluxe protein) allow export of a variety of substrates in Gram negative bacteria. TolC is believed to be a membre af an ABC transporter system for protein secretion without cleavage of a signal sequence. Pfam: Outer membrane efflux protein Signal peptide no TMHs%3B~Family membership	gene	gene861	http://www.ncbi.nlm.nih.gov/gene/?term=azo0850
azo0851	azo0851	waaA	waaA	915379	916623	-	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) (KDO transferase). TRANSFERS THREE 3-DEOXY-D-MONO OCTULONIC ACID (KDO) INDIVIDUALLY FROM CMP-KDO TO A TETRAACYLDISACCHARIDE 14- BISPHOSPHATE PRECURSOR OF LIPID A (LIPID IVA). InterPro: Glycosyl transferases group 1 2A0115: benzoate transport%3B~High confidence in function and specificity	gene	gene862	http://www.ncbi.nlm.nih.gov/gene/?term=azo0851
azo0852	azo0852	wbnF	wbnF	916809	917816	+	putative nucleotide sugar epimerase	Probably involved in the biosynthesis of exopolysaccharides. 68%25 Epimerase_Dh.IPR008089%3B Nuc_sugar_epim. Pfam:PF01370%3B Epimerase%3B 1.%3B~High confidence in function and specificity	gene	gene863	http://www.ncbi.nlm.nih.gov/gene/?term=azo0852
azo0853	azo0853	apaH	apaH	917838	918635	+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	Bis(5-nucleosyl)-tetraphosphatase symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 55- P1P4-tetraphosphate pyrophosphohydrolase). Hydrolyzes diadenosine 55-P1P4-tetraphosphate to yield ADP (By similarity). Similar to TREMBL: trembl|Q7NQS0 InterPro:(IPR004617) ApaH.(IPR004843) M-ppestrase. Pfam (PF00149): Metallophos. TIGRFAM (TIGR00668): apaH. apaH: bis(5-nucleosyl)-tetraphosphata%3B~Family membership	gene	gene864	http://www.ncbi.nlm.nih.gov/gene/?term=azo0853
azo0854	azo0854	plsC	plsC	918645	919436	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	Function:-Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position (By similarity). CATALYTIC ACTIVITY: Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate %3D CoA + 1%2C2-diacyl-sn-glycerol 3-phosphate. Entry name:- PLSC_NEIGO Primary accession number :- Q59601 InterPro IPR002123%3B Acyltransferase. IPR004552%3B AGP_acyltrn. Pfam PF01553%3B Acyltransferase%3B 1. Identities %3D 68/182 (37%25) Prediction: Non-secretory protein Signal peptide probability: 0.096 Number of predicted TMHs: 0%3B~Family membership	gene	gene865	http://www.ncbi.nlm.nih.gov/gene/?term=azo0854
azo0855	azo0855		azo0855	919508	920266	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to cv0660 of C. violaceum of 59%25 (trembl|Q7P0A7) no domains predicted no singal peptide no TMHs	gene	gene866	http://www.ncbi.nlm.nih.gov/gene/?term=azo0855
azo0856	azo0856		azo0856	920383	921654	+	glycosyltransferase	Similar to amylovoran biosynthesis glycosyl transferase amsK (EC 2.-.-.-). INVOLVED IN THE BIOSYNTHESIS OF AMYLOVORAN WHICH FUNCTIONS AS A VIRULENCE FACTOR. Similar to protein annotated as sulfolipid sulfoquinovosyldiacylglycerol biosynthesis proteins.%3B~Family membership	gene	gene867	http://www.ncbi.nlm.nih.gov/gene/?term=azo0856
azo0857	azo0857		azo0857	921718	922653	+	putative carbohydrate kinase	38%25 PfkB.Family of carbohydrate kinases Pfam:PF00294%3B PfkB%3B 1.%3B~Specificity unclear	gene	gene868	http://www.ncbi.nlm.nih.gov/gene/?term=azo0857
azo0858	azo0858	slyB	slyB	922647	923120	+	putative outer membrane protein SlyB	Outer membrane lipoprotein SlyB. Homology to slyB of E. coli of 32%25 (sprot|SLYB_ECOLI) no domains predicted signal peptide no TMHs%3B~Family membership	gene	gene869	http://www.ncbi.nlm.nih.gov/gene/?term=azo0858
azo0859	azo0859	dgkA	dgkA	923122	923514	-	probable diacylglycerol kinase	Probable Diacylglycerol kinase. Homology to dgkA of E. coli of 40%25 (sprot|KDGL_ECOLI) RECYCLING OF DIACYLGLYCEROL PRODUCED DURING THE TURNOVER OF MEMBRANE PHOSPHOLIPID (BY SIMILARITY). Pfam: prokaryotic diacylglycerol kinase no signal peptide 2 TMHs%3B~High confidence in function and specificity	gene	gene870	http://www.ncbi.nlm.nih.gov/gene/?term=azo0859
azo0860	azo0860		azo0860	923623	924912	-	Hypothetical protein	Hypothetical protein. No Domains%2CFeatures%2CSignal Pepetide or TMH reported Present. Most top hits suggest the possibillity of Transmembrane protein%2C but due to non existance of any TMH's domains it cant be considered as a choice.%3B~Specificity unclear	gene	gene871	http://www.ncbi.nlm.nih.gov/gene/?term=azo0860
azo0861	azo0861	prmA	prmA	924919	925803	-	ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11 Mtase). Methylates ribosomal protein L11%3B~High confidence in function and specificity	gene	gene872	http://www.ncbi.nlm.nih.gov/gene/?term=azo0861
azo0862	azo0862	accC1	accC1	925814	927175	-	probable biotin carboxylase (a subunit of acetyl-coa carboxylase)	Function:-THIS PROTEIN IS A COMPONENT OF THE ACETYL COENZYME A CARBOXYLASE COMPLEX%3B FIRST BIOTIN CARBOXYLASE CATALYZES THE CARBOXYLATION OF THE CARRIER PROTEIN AND THEN THE TRANSCARBOXYLASE TRANSFERS THE CARBOXYL GROUP TO FORM MALONYL-COA (BY SIMILARITY). Identities %3D 312/444 (70%25) InterPro IPR004549%3B AccC. IPR005482%3B Biotin_carb_C. IPR005479%3B CPase_L_D2. IPR005481%3B CPase_L_N. Pfam PF02785%3B Biotin_carb_C%3B 1. PF00289%3B CPSase_L_chain%3B 1. PF02786%3B CPSase_L_D2%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene873	http://www.ncbi.nlm.nih.gov/gene/?term=azo0862
azo0863	azo0863		azo0863	927168	927296	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene874	http://www.ncbi.nlm.nih.gov/gene/?term=azo0863
azo0864	azo0864	accB	accB	927305	927757	-	probable biotin carboxyl carrier protein of acetyl-CoA carboxylase	Function:-Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP). THIS PROTEIN IS A COMPONENT OF THE ACETYL COENZYME A CARBOXYLASE COMPLEX%3B FIRST BIOTIN CARBOXYLASE CATALYZES THE CARBOXYLATION OF THE CARRIER PROTEIN AND THEN THE TRANSCARBOXYLASE TRANSFERS THE CARBOXYL GROUP TO FORM MALONYL-COA. Entry name:-SWISSPROT:BCCP_ECOLI Prim. accession # P02905 InterPro :-IPR001249%3B AcCoA_biotinCC. IPR001882%3B Biotin_BS. IPR000089%3B Biotin_lipoyl. Pfam:- PF00364%3B Biotin_lipoyl%3B 1. Number of predicted TMHs: 0 Identity:- 94/157 (59%25)%3B~High confidence in function and specificity	gene	gene875	http://www.ncbi.nlm.nih.gov/gene/?term=azo0864
azo0865	azo0865	aroQ	aroQ	927813	928310	-	probable 3-dehydroquinate dehydratase	Probable 3-dehydroquinate dehydratase 1 (EC 4.2.1.10). Homology to aroQ of A. pleuropneumoniae of 58%25 (sprot|AROQ_ACTPL) Catalyzes a trans-dehydration via an enolate intermediate (By similarity). Pfam: Dihydroquinase II no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene876	http://www.ncbi.nlm.nih.gov/gene/?term=azo0865
azo0866	azo0866		azo0866	928372	928908	-	conserved hypothetical thioredoxin	Hypothetical thioredoxin. Homology with BPP3919 of B. parapertussis of 38%25. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. Tigrfam: dsbE: periplasmic protein thiol:disulfi signal peptide probable 1 TMHs%3B~Family membership	gene	gene877	http://www.ncbi.nlm.nih.gov/gene/?term=azo0866
azo0867	azo0867		azo0867	928905	929594	-	conserved hypothetical protein	Conserved hypothetical protein%2C 39%25 identity to TrEMBL%3BQ8XVP7%3B Signal Peptide present. Coils2 program reporting presence of coiled coil. No TMH present. TIGR00004: endoribonuclease L-PSP putat	gene	gene878	http://www.ncbi.nlm.nih.gov/gene/?term=azo0867
azo0868	azo0868	mpl	mpl	929650	930996	+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) (Murein peptide ligase). REUTILIZES THE INTACT TRIPEPTIDE L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELATE BY LINKING IT TO UDP-N-ACETYLMURAMIC ACID. InterPro: Cytoplasmic peptidoglycan synthetases N-terminal ispD: 4-diphosphocytidyl-2C-methyl-D-er%3B~High confidence in function and specificity	gene	gene879	http://www.ncbi.nlm.nih.gov/gene/?term=azo0868
azo0869	azo0869		azo0869	931018	931668	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc3264 of R. solanacearum (trembl|Q8XUC7). Smart: Bacterial OsmY and nodulation domain (BON) The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins%3B outside of this group the distribution is more disparate. signal peptide TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene880	http://www.ncbi.nlm.nih.gov/gene/?term=azo0869
azo0870	azo0870	gmhA	gmhA	931665	932258	-	putative phosphoheptose isomerase	Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis%2C and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi. 54%25 GmhA.IPR001347%3B SIS. Pfam:PF01380%3B SIS%3B 1. TIGRFAMs:TIGR00441%3B gmhA%3B 1.%3B~High confidence in function and specificity	gene	gene881	http://www.ncbi.nlm.nih.gov/gene/?term=azo0870
azo0871	azo0871		azo0871	932374	932787	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to pa4424 of P. aeruginosa of 44%25 (pir|H83091). Pfam: Uncharacterised protein family UPF0102 (PF02021). Interpro: Protein of unkown function UPF0102 (IPR003509). no signal peptide. no TMHs.	gene	gene882	http://www.ncbi.nlm.nih.gov/gene/?term=azo0871
azo0872	azo0872		azo0872	932786	933673	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to pp1326 of P. putida of 56%25 ((AAN66950). InterPro: Uncharacterized protein family UPF0011 (IPR008189) TIGR00096: conserved hypothetical protein Pfam: Tetropyrrole (Crrin/Porphyrin) methyltransferase no signal peptide no TMHs	gene	gene883	http://www.ncbi.nlm.nih.gov/gene/?term=azo0872
azo0873	azo0873	pyrC	pyrC	933728	934762	+	probable dihydroorotase	Probable dihydroorotase (EC 3.5.2.3) (DHOase). Homology to pyrC of E. coli of 57%25 (sprot|PYRC_ECOLI(SRS)) Is involeved in the pyrimidine biosynthesis. CATALYTIC ACTIVITY: (S)-dihydroorotate + H(2)O %3D N-carbamoyl-L-aspartate. Needs 2 zinc ions per subunit. InterPro: Dihydroorotase homodimeric type (IPR004721)%3B Dihydroorotase (IPR002195) Tigrfam: pyrC_dimer: dihydroorotase homodimeric type no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene884	http://www.ncbi.nlm.nih.gov/gene/?term=azo0873
azo0874	azo0874		azo0874	934759	935190	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03003273 of Dechloromonas aromatica of 35%25 (gi|41723286|ref|ZP_00150229.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene885	http://www.ncbi.nlm.nih.gov/gene/?term=azo0874
azo0875	azo0875	mraZ	mraZ	935993	936436	+	protein mraZ	Protein mraZ.%3B~High confidence in function and specificity	gene	gene886	http://www.ncbi.nlm.nih.gov/gene/?term=azo0875
azo0876	azo0876	mraW	mraW	936433	937371	+	SAM dependent methyltransferase	S-adenosyl-methyltransferase mraW (EC 2.1.1.-). Exhibits a S-adenosyl-dependent methyltransferase activity (By similarity). TIGR00006: conserved hypothetical prote%3B~High confidence in function and specificity	gene	gene887	http://www.ncbi.nlm.nih.gov/gene/?term=azo0876
azo0877	azo0877	FtsL	FtsL	937368	937631	+	putative cell division protein FtsL	Putative cell division protein FtsL. Homology to ftsL of E. coli of 32%25 (sprot|FTSL_ECOLI). Protein involved in cell division and cell growth. May play some role in coupling cell division and peptidoglycan physiology. Pfam: Cell division protein FtsL signal peptide no TMHs%3B~Family membership	gene	gene888	http://www.ncbi.nlm.nih.gov/gene/?term=azo0877
azo0878	azo0878	FtsI	FtsI	937628	939388	+	probable peptidoglycan glycosyltransferase	Probable peptidoglycan glycosyltransferase. Homology to ftsI of E. coli of 43%25 (sprot|FTSI_ECOLI) Cell wall formation. Essential for the formation of a septum of the murein sacculus. Synthesis of cross-linked peptidoglycan from the lipid intermediates. InterPro: Penicillin binding protein transpeptidase domain (IPR001460) Pfam: Penicillin-binding protein dimerisation domain%3B Penicillin binding proetin transpeptidas domain signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene889	http://www.ncbi.nlm.nih.gov/gene/?term=azo0878
azo0879	azo0879	murE	murE	939385	940890	+	probable UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase	Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase Homology to murE of E. coli of 40%25 (sprot|MURE_ECOLI) Cell wall formation. Diaminopimelic acid adding enzyme (By similarity). Pfam: Mur ligase family%2C catalytic domain%3B Mur ligase family%2C glutamate ligase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene890	http://www.ncbi.nlm.nih.gov/gene/?term=azo0879
azo0880	azo0880	murF	murF	940863	942299	+	UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C 6-diaminopimelate-D-alanyl-D-alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D- alanine-adding enzyme). Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide the precursor of murein (By similarity). InterPro: Cytoplasmic peptidoglycan synthetases N-terminal mobB: molybdopterin-guanine dinucleot%3B~High confidence in function and specificity	gene	gene891	http://www.ncbi.nlm.nih.gov/gene/?term=azo0880
azo0881	azo0881	mraY	mraY	942301	943389	+	phospho-N-acetylmuramoyl-pentapeptide transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (UDP- MurNAc-pentapeptide phosphotransferase). First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (By similarity). mraY: phospho-N-acetylmuramoyl-pentape%3B~High confidence in function and specificity	gene	gene892	http://www.ncbi.nlm.nih.gov/gene/?term=azo0881
azo0882	azo0882	murD	murD	943386	944804	+	probable UDP-N-acetylmuramoylalanine-D-glutamate ligase	Probable UDP-N-acetylmuramoylalanine-D-glutamate ligase. Homology to murD of P. aeruginosa of 45%25 (Sprot:MURD_PSEAE) Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) (By similarity). InterPro: Cytoplasmic peptidoglycan synthetases N-terminal (IPR000713)%3B Cytoplasmic peptidoglycan synthetases C-terminal (IPR004101) Pfam: Mur ligase family%2C catalytic domain%3B Mur ligase family%2C glutamate ligase domain no signal peptide no TMHs rpiB: ribose 5-phosphate isomerase B%3B~High confidence in function and specificity	gene	gene893	http://www.ncbi.nlm.nih.gov/gene/?term=azo0882
azo0883	azo0883	FtsW	FtsW	944801	946033	+	cell division protein FtsW	This is a septum-peptidoglycan biosynthetic protein involved in cell wall formation. Plays a role in the stabilization of the ftsZ ring during cell division.%3B~High confidence in function and specificity	gene	gene894	http://www.ncbi.nlm.nih.gov/gene/?term=azo0883
azo0884	azo0884	murG	murG	946030	947100	+	probable undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	Probable undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. Homology to murG of e. coli of 47%25 (Sprote:MURG_ECOLI) Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)GlcNAc (lipid intermediate II) (By similarity). InterPro: Glycosyltransferase family 28 (IPR004276) Pfam: Glycosyltransferase family singal peptide no TMHs%3B~High confidence in function and specificity	gene	gene895	http://www.ncbi.nlm.nih.gov/gene/?term=azo0884
azo0885	azo0885	murC	murC	947097	948500	+	probable UDP-N-acetylmuramate-L-alanine ligase	Probable UDP-N-acetylmuramate-L-alanine ligase. Homology to murC of P. aeruginosa of 58%25 (sprot:MURC_PSEAE) Cell wall formation. Pfam: Mur ligase family%2C catalytic domain%3B Mur ligase family%2C glutamate ligase domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene896	http://www.ncbi.nlm.nih.gov/gene/?term=azo0885
azo0886	azo0886	ddlB	ddlB	948497	949411	+	probable D-alanine-D-alanine ligase	Probable D-alanine-D-alanine ligase. Homology to ddlB of E. coli of 54%25 (sprot|DDLB_ECOLI) Cell wall formation (By similarity). InterPro: D-alanine--D-alanine ligase (IPR005905) Pfam: D_ala D_ala liganse signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene897	http://www.ncbi.nlm.nih.gov/gene/?term=azo0886
azo0887	azo0887	FtsQ	FtsQ	949404	950234	+	putative cell division protein FtsQ	Putative cell division protein FtsQ. Homology to ftsQ of E. coli of 23%25 (Sprot:FTSQ_ECOLI) This protein may be involved in septum formation. Pfam: Cell division protein FtsQ no signal peptide 1 TMHs%3B~Family membership	gene	gene898	http://www.ncbi.nlm.nih.gov/gene/?term=azo0887
azo0888	azo0888	FtsA	FtsA	950231	951460	+	cell division protein FtsA	This protein may be involved in anomalous filament growth. May be a component of the septum. It may interact with ftsZ. InterPro: Cell division protein FtsA%3B~High confidence in function and specificity	gene	gene899	http://www.ncbi.nlm.nih.gov/gene/?term=azo0888
azo0889	azo0889	FtsZ	FtsZ	951602	952744	+	cell division protein FtsZ	This protein is essential to the cell-division process. It seems to assemble into a dynamic ring on the inner surface of the cytoplasmic membrane at the place where division will occur and the formation of the ring is the signal for septation to begin. Binds to and hydrolyzes GTP. ftsZ: cell division protein FtsZ%3B~High confidence in function and specificity	gene	gene900	http://www.ncbi.nlm.nih.gov/gene/?term=azo0889
azo0890	azo0890	lpxC	lpxC	952910	953833	+	probable UDP-3-O-acyl N-acetylglycosmaine deacetylase	Probable UDP-3-O-acyl N-acetylglucosamine deacetylase. Homology to lpxC of P. aeruginosa of 58%25 (Sprot:LPXC_PSEAE) Involved in the biosynthesis of lipid A a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (By similarity). InterPro: UDP-3-0-acyl N-acetylglucosamine deacetylase (IPR004463) tigrfam: lpxC: UDP-3-0-acyl N-acetylglucosamine deacetylase Pfam: UDP-3-0-acyl N-acetylglucosamine deacetylase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene901	http://www.ncbi.nlm.nih.gov/gene/?term=azo0890
azo0891	azo0891		azo0891	953868	954056	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 1 TMH	gene	gene902	http://www.ncbi.nlm.nih.gov/gene/?term=azo0891
azo0892	azo0892		azo0892	954061	954489	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV4285 of C.violaceum of 32%25 (tremble:Q7NQ55). No domains predicted. No TMHs No signal peptide.	gene	gene903	http://www.ncbi.nlm.nih.gov/gene/?term=azo0892
azo0893	azo0893	secA	secA	954595	957324	+	preprotein translocase SecA subunit	Preprotein translocase secA subunit. Involved in protein export. Interacts with the secY/secE subunits. SecA has a central role in coupling the hydrolysis of ATP to the transfer of pre-secretory periplasmic and outer membrane proteins across the membrane. InterPro: SecA protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene904	http://www.ncbi.nlm.nih.gov/gene/?term=azo0893
azo0894	azo0894		azo0894	957401	958882	+	GAF-domain containing protein	GAF-domain containing protein%2C%3B~Conserved hypothetical protein	gene	gene905	http://www.ncbi.nlm.nih.gov/gene/?term=azo0894
azo0895	azo0895	argJ	argJ	958968	960209	+	probable arginine biosynthesis bifunctional protein ArgJ	Arginine biosynthesis bifunctional protein argJ. Homology to argJ of N. gonorrhoeae of 55%25 (AAA25447). Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetlyglutamate from glutamate (EC 2.3.1.35) and acetyl-CoA and of ornithine by transacetylation between acetylornithine and glutamate (EC 2.3.1.1) (By similarity). Tigrfam: ArgJ: glutamate N-acetyltransferase/amino acid biosynthesis Pfam: ArgJ family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene906	http://www.ncbi.nlm.nih.gov/gene/?term=azo0895
azo0896	azo0896		azo0896	960324	961154	+	putative phosphoprotein phosphatase	Putative phosphoprotein phosphatase%2C%3B~Conserved hypothetical protein	gene	gene907	http://www.ncbi.nlm.nih.gov/gene/?term=azo0896
azo0897	azo0897		azo0897	961167	962186	+	hypothetical secreted protein	Hypothetical secreted protein. Homology to pp3428 of P. putida of 26%25 (tremble:Q88HD2). Domain structure: 111 aa - 157 aa LysM%3B 232 aa - 313 aa TRP. Pfam: LysM domain%3B TRP. signal peptide. no TMHs	gene	gene908	http://www.ncbi.nlm.nih.gov/gene/?term=azo0897
azo0898	azo0898		azo0898	962191	963855	-	putative serine/threonine protein kinase	Putative serine/threonine protein kinase%2C%3B~Family membership	gene	gene909	http://www.ncbi.nlm.nih.gov/gene/?term=azo0898
azo0899	azo0899		azo0899	963863	964384	-	hypothetical membrane protein	Hypothetical membrane protein. No good homology to a protein of similar size of the data bank. Pfam: FHA domain (PF00498). The forkhead-associated (FHA) domain is a putative nuclear signalling domain found in a variety of otherwise unrelated proteins. The FHA domain comprise approximately 55 to 75 amino acids and contains three highly conserved blocks separated by divergent spacer regions.To date%2C genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins%2C such as kinases%2C phosphatases%2C kinesins%2Ctranscription factors%2C RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair%2C signal transduction%2C vesicular transport and protein degradation are just a few examples. Interpro: Forkhead-associated (IPR000253). no signal peptide. 1 TMHs	gene	gene910	http://www.ncbi.nlm.nih.gov/gene/?term=azo0899
azo0900	azo0900	apaG	apaG	964488	964871	-	conserved hypothetical protein	ApaG protein. In S.typhimurium mutations in apaG/corD give a phenotype of low-level Co(2+) resistance. They also decrease Mg(2+) efflux but not influx via the corA Mg(2+) transport system. 57%25 DUF525. Pfam:PF04379%3B DUF525%3B 1.%3B~High confidence in function and specificity	gene	gene911	http://www.ncbi.nlm.nih.gov/gene/?term=azo0900
azo0901	azo0901	purB	purB	965057	966433	+	adenylosuccinate lyase	Adenylosuccinate lyase (Adenylosuccinase) (ASL).%3B~High confidence in function and specificity	gene	gene912	http://www.ncbi.nlm.nih.gov/gene/?term=azo0901
azo0902	azo0902		azo0902	966512	966829	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS03757 of R.solanacearum of 44%25 (tremble:Q8XS71). No domains predicted. No TMHs. No signal peptide.	gene	gene913	http://www.ncbi.nlm.nih.gov/gene/?term=azo0902
azo0903	azo0903	secF	secF	966923	967855	-	protein-export membrane protein SecF	Protein-export membrane protein secF. Involved in protein export. Part of the prokaryotic protein translocation apparatus which comprise secA%2C secB%2C secD%2CsecE%2C secF%2C secG and secY. InterPro: SecD/SecF/SecDF export membrane proteins 2A0604s01: protein-export membrane prot (Tigerfam) probable 6 TMHS no signal peptide Pfam: SecD-SecF%3B~High confidence in function and specificity	gene	gene914	http://www.ncbi.nlm.nih.gov/gene/?term=azo0903
azo0904	azo0904	secD	secD	967876	969750	-	protein-export membrane protein SecD	Protein-export membrane protein secD. Involved in protein export. InterPro: SecD/SecF/SecDF export membrane proteins 2A0604s01: protein-export membrane pr (tigrfam) probable 4 TMHs%2C no signal peptide%3B~High confidence in function and specificity	gene	gene915	http://www.ncbi.nlm.nih.gov/gene/?term=azo0904
azo0905	azo0905	yajC	yajC	969851	970180	-	probable preprotein translocase subunit YajC	Probable preprotein translocase subunit YajC. Homology to yajC of E. coli of 41%25 (sprot|YAJC_ECOLI) Involved in the sec-dependent protein transport through the inner membrane of bacteria. Tigrfam: yajC: preprotein translocase%2C YajC subunit Pfam: Uncharcterized secreted protein%2C YajC family (PF02699) Interpro: YajC (IPR003849) no signal peptide. 1 TMH%3B~High confidence in function and specificity	gene	gene916	http://www.ncbi.nlm.nih.gov/gene/?term=azo0905
azo0906	azo0906		azo0906	970362	971201	+	conserved hypothetical signal transduction protein	Conserved hypothetical signal transduction protein. Homology to Daro03002984 of Dechloromonas aromatica of 39%25 (gi|53729872|ref|ZP_00150342.2|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene917	http://www.ncbi.nlm.nih.gov/gene/?term=azo0906
azo0907	azo0907	tgt	tgt	971214	972326	-	queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (tRNA-guanine transglycosylase) (Guanine insertion enzyme). Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAS with GU(N) anticodons (tRNA-Asp -Asn -His and -Tyr). After this exchange a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine resulting in the hypermodified nucleoside queuosine (Q) (7-(((45-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)%3B~High confidence in function and specificity	gene	gene918	http://www.ncbi.nlm.nih.gov/gene/?term=azo0907
azo0908	azo0908	queA	queA	972316	973353	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) (Queuosine biosynthesis protein queA). Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step. The ribosyl moiety of AdoMet is transferred and isomerized to the epoxycyclopentane residue of oQ.%3B~High confidence in function and specificity	gene	gene919	http://www.ncbi.nlm.nih.gov/gene/?term=azo0908
azo0909	azo0909	nhaR	nhaR	973554	974405	-	transcriptional regulator%2C LysR family	Transcriptional activator protein nhaR (Na+/H+ antiporter regulatory protein). Plays a role in the positive regulation of nhaA. Similar to SWISSPROT: sprot|NHAR_ECOLI (34%25 Escherichia coli%2C and Shigella flexneri%2C transcriptional activator protein NhaR (na+/h+ antiporter regulatory protein)) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2ClysR family.%3B~High confidence in function and specificity	gene	gene921	http://www.ncbi.nlm.nih.gov/gene/?term=azo0909
azo0910	azo0910		azo0910	974584	974925	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebD81 Azoarcus sp. EbN1 of 64%25 (gnl|keqq|eba:ebD81(KEGG)). No domains predicted. No signal peptid. No TMHs	gene	gene922	http://www.ncbi.nlm.nih.gov/gene/?term=azo0910
azo0911	azo0911	yccA	yccA	974987	975652	+	probable carrier/transport protein	Hypothetical protein PA2604. pir:D85624: 57%25 identity.73%25 similarity SIMILARITY:Belongs to the BI1 family. InterPro:Uncharacterized protein family UPF0005 IPR006213%3B Bax_inhbtr1. IPR006214%3B UPF0005. Pfam:ZIP: Zinc transporter Probable glutamatereceptor Signal peptide present (SignalP predicted) and transmembrane helices 7 (TMHMM predicted) Pfam:PF01027%3B UPF0005%3B InterPro: Uncharacterized protein family UPF0005 2_A_01_02: Multidrug resistance protein%3B~Specificity unclear	gene	gene923	http://www.ncbi.nlm.nih.gov/gene/?term=azo0911
azo0912	azo0912	rosB	rosB	975796	977517	+	putative Potassium/proton antiporter	Probable potassium antiporter%2C rosB. 38%25 HPr_SerP_S.IPR004771%3B K_eff.IPR006153%3B Na_H_porter. IPR003148%3B TrkA_N. Pfam:PF00999%3B Na_H_Exchanger%3B 1.PF02254%3B TrkA_N%3B 1. TIGRFAMs:TIGR00932%3B 2a37%3B 1. TMhelix: 12.%3B~High confidence in function and specificity	gene	gene924	http://www.ncbi.nlm.nih.gov/gene/?term=azo0912
azo0913	azo0913	ytfL2	ytfL2	977524	978858	-	probable hemolysin	Hypothetical protein sll0260. CBS domains are found in the intracellular regions of a number of different integral membrane proteins. Two CBS domains are found in intracellular loops of several voltage gated chloride channels. A family of magnesium transporters also contain CBS domains. TREMBL:Q8KEZ1: 61%25 identity%2C 74%25 similarity InterPro: Domain of unknown function DUF21 InterPro:IPR002550%3B CBS. IPR000644: CBS_domain. IPR005170: CorC_transpt-asc. Pfam: PF00571%3B CBS%3B 2. PF03471: CorC_HlyC%3B 1. PF01595: DUF21%3B gntP: gluconate transporter Signal peptide present Transmembrane helices 3%3B~Specificity unclear	gene	gene925	http://www.ncbi.nlm.nih.gov/gene/?term=azo0913
azo0914	azo0914	terC	terC	979395	980357	+	putative tellurium resistance protein	Tellurium resistance protein terC. Could conceivably alter the intracellular level of tellurium in a manner leading to resistance. Alternatively its presence in the membrane may provide a barrier to entry of the tellurium ions.32%25 TerC. Pfam: PF03741%3B TerC%3B 1. TMHelix:9.%3B~High confidence in function and specificity	gene	gene926	http://www.ncbi.nlm.nih.gov/gene/?term=azo0914
azo0915	azo0915	accA	accA	980435	981400	+	probable acetyl-coenzyme a carboxylase carboxyl transferase subunit alpha	Function:-THIS PROTEIN IS A COMPONENT OF THE ACETYL COENZYME A CARBOXYLASE COMPLEX%3B FIRST BIOTIN CARBOXYLASE CATALYZES THE CARBOXYLATION OF THE CARRIER PROTEIN AND THEN THE TRANSCARBOXYLASE TRANSFERS THE CARBOXYL GROUP TO FORM MALONYL-COA (BY SIMILARITY). Identities %3D 207/313 (66%25) Entry name:- SWISSPROT:ACCA_ECOLI Prim. accession # P30867 InterPro:- IPR001095%3B Ac-CoA_carboxylA. Pfam :-PF03255%3B ACCA%3B 1. Number of predicted TMHs: 0%3B~Family membership	gene	gene927	http://www.ncbi.nlm.nih.gov/gene/?term=azo0915
azo0916	azo0916	tilS	tilS	981412	982758	+	putative tRNA(Ile)-lysidine synthetase	Putative tRNA(Ile)-lysidine synthetase. Homology to tils of E.coli of 34%25 (gnl|keqq|eco:b0188(KEGG)). Pfam: PP-loop family. Tigrfam: tRNA(Ile)-lysidine synthetase. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria%2C the wobble position of the tRNA(Ile) recognizing AUA is lysidine%2C a lysine derivative of cytidine. This family describes a protein domain found%2C apparently%2C in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable%3B some%2C including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase%2C include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( PF01171). It appears in the literature and protein databases as TilS%2C YacA%2C and putative cell cycle protein MesJ (a misnomer). No signal peptide. No TMHs.%3B~Family membership	gene	gene928	http://www.ncbi.nlm.nih.gov/gene/?term=azo0916
azo0917	azo0917		azo0917	982714	983319	-	two-component response regulator	C4-dicarboxylate transport transcriptional regulatory protein%2C%3B~High confidence in function and specificity	gene	gene929	http://www.ncbi.nlm.nih.gov/gene/?term=azo0917
azo0918	azo0918	dctS	dctS	983320	985311	-	two-component sensor kinase	C4-dicarboxylate transport sensor protein%2C%3B~High confidence in function and specificity	gene	gene930	http://www.ncbi.nlm.nih.gov/gene/?term=azo0918
azo0919	azo0919	dctP2	dctP2	985540	986544	+	probable c4-dicarboxylate-binding periplasmic protein	TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 70%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present. TMhelix:1%3B~High confidence in function and specificity	gene	gene931	http://www.ncbi.nlm.nih.gov/gene/?term=azo0919
azo0920	azo0920	dctQ2	dctQ2	986612	987310	+	putative TRAP-type C4-dicarboxylate transport system%2C small permease	The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 45%25 DctQ. Pfam:PF04290%3B DctQ%3B 1. TMhelix:4.%3B~High confidence in function and specificity	gene	gene932	http://www.ncbi.nlm.nih.gov/gene/?term=azo0920
azo0921	azo0921	dctM2	dctM2	987325	988611	+	putative TRAP-type C4-dicarboxylate transport system%2C large permease	The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 60%25 DctM.IPR000252%3B DedA.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. TMhelix:13. Signal peptide: present.%3B~High confidence in function and specificity	gene	gene933	http://www.ncbi.nlm.nih.gov/gene/?term=azo0921
azo0922	azo0922	dedA	dedA	988762	989409	+	DedA protein	DedA family protein%2C 57%25 identity(75%25 similarity) to TrEMBL%3BQ88QF4. TrEMBl%3BQ889M5(57%25 identity). SwissProt%3BP09548(55%25 identity) Has PF00597%2C DedA family%3BIPR000252%3BThis family combines the DedA related proteins and YIAN/YGIK family. Members of this family are not functionally characterised. These proteins contain multiple predicted transmembrane regions.%3B~High confidence in function and specificity	gene	gene934	http://www.ncbi.nlm.nih.gov/gene/?term=azo0922
azo0923	azo0923	ndk	ndk	989496	989921	+	Nucleoside-diphosphate kinase	Nucleoside diphosphate kinase (NDP kinase) (Nucleoside-2-P kinase). InterPro: Nucleoside diphosphate kinase%3B~High confidence in function and specificity	gene	gene935	http://www.ncbi.nlm.nih.gov/gene/?term=azo0923
azo0924	azo0924		azo0924	990009	991136	+	conserved hypothetical protein	Hypothetical protein yfgB. putative fe-s-cluster redox enzyme TREMBL:Q7NS85: 70%25 identity%3B 80%25 similarity. InterPro:IPR004383%3B Cons_hypoth48. IPR007197: Radical_SAM. Pfam:PF04055%3B Radical_SAM%3B No signal peptide. No transmembrane helices. TIGR00048: conserved hypothetical prote%3B~Function unclear	gene	gene936	http://www.ncbi.nlm.nih.gov/gene/?term=azo0924
azo0925	azo0925	pilF	pilF	991136	991951	+	putative type 4 pilus biogenesis protein	Type 4 pilus biogenesis protein%2C%3B~Function unclear	gene	gene937	http://www.ncbi.nlm.nih.gov/gene/?term=azo0925
azo0926	azo0926		azo0926	991948	992856	+	transcriptional regulator	Transcriptional regulator %2C 36%25 identity to TrEMBL%3BQ88PJ8. Weak homology with other proteins spanning entire length. Prosite%2CPS50943%3B HTH_CROC1%3B The cro/C1-type HTH domain is a DNA-binding%2C helix-turn-helix (HTH) domain of about 50-60 residues present in transcriptional regulators. The domain is named after the transcriptional repressors cro and C1 of temperate bacteriophages 434 and lambda%2C respectively.%3B~Specificity unclear	gene	gene938	http://www.ncbi.nlm.nih.gov/gene/?term=azo0926
azo0927	azo0927	gcpE	gcpE	992856	994103	+	probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3). Homology to gcpE of T. thermophilus of 61%25 (trembl|Q84GJ3(SRS)). Converts 2C-methyl-D-erythritol 24-cyclodiphosphate (ME-24cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (By similarity). Tigrfam: gcpE: gcpE protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene939	http://www.ncbi.nlm.nih.gov/gene/?term=azo0927
azo0928	azo0928	hisS	hisS	994138	995439	+	Histidine--tRNA ligase.	Histidyl-tRNA synthetase. hisS%2C 75%25 idemtity to TrEMBL%3BQ5P7B4. Has Pfam%3BPF00587%2C tRNA synthetase class II core domain (G%2C H%2C P%2C S and T).Other tRNA synthetase sub-families are too disIPR002314%2CtRNA-synt_2b. Has Pfam%3BPF03129%2CAnticodon binding domain. This domain is found in histidyl%2C glycyl%2C threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain%3B~High confidence in function and specificity	gene	gene940	http://www.ncbi.nlm.nih.gov/gene/?term=azo0928
azo0929	azo0929		azo0929	995426	996070	+	conserved hypothetical protein	Putative membrane protein%2C 32%25 identity to TrEMBL%3BQ7WHN2. Signal Peptide present.%3B~Specificity unclear	gene	gene941	http://www.ncbi.nlm.nih.gov/gene/?term=azo0929
azo0930	azo0930		azo0930	996074	997216	+	conserved hypothetical protein	PQQ enzyme repeat protein%2C 40%25 identical(60%25 similarity)to TrEMBL%3BQ82XU7. Signal Peptide present. Has 6 copies SMART%3BSM00564%2C PQQ%2C beta-propeller repeat%3BIPR002372%3B Beta-propeller repeat occurrs in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor%2C in Ire1p-like Ser/Thr kinases%2C and in prokaryotic dehydrogenases.%3B~Specificity unclear	gene	gene942	http://www.ncbi.nlm.nih.gov/gene/?term=azo0930
azo0931	azo0931	engA	engA	997232	998560	+	probable GTP-binding protein	GTP-binding protein engA. SPROT:Q8Y026: 65%25 identity%2C 78%25 similarity. GTPase of unknown physiological role. InterPro: GTP-binding protein (HSR1-related) FUNCTION: GTPase of unknown physiological role. SIMILARITY: Belongs to the era/trmE family of GTP-binding proteins. EngA subfamily InterPro:IPR003593%3B AAA_ATPase. IPR005289%3B GTP-bindding_dom. IPR006073%3B GTP1_OBG. IPR002917%3B MMR_HSR1. IPR005225%3B Small_GTP. Pfam: PF01926%3B MMR_HSR1%3B 1. thdF: tRNA modification GTPase TrmE No signal peptide. Absence of transmembrane helices%3B~Specificity unclear	gene	gene943	http://www.ncbi.nlm.nih.gov/gene/?term=azo0931
azo0932	azo0932	hfq	hfq	998667	998909	+	RNA-binding regulatory protein	Hfq protein. RNA-binding protein that stimulates the elongation of poly(A) tails (By similarity). TREMBL:Q7NS93: 87%25 identity%2C 94%25 similarity InterPro:IPR005001%3B Hfq. IPR001163%3B snRNP_Sm. Pfam: PF01423%3B LSM No transmembrane helices%3B~High confidence in function and specificity	gene	gene944	http://www.ncbi.nlm.nih.gov/gene/?term=azo0932
azo0933	azo0933	hflX1	hflX1	998991	1000130	+	probable GTP-binding subunit of protease specific for phage lambda	GTP-binding protein hflX. trembl:Q7NS94: 66%25 identity%3B 78%25 similarity. InterPro:IPR006073%3B GTP1_OBG. These proteins contain GTP-binding motifs and are GTP1OBG Pfam:MMR_HSR1:GTPase of unknown function thdF: tRNA modification GTPase TrmE No Signal peptide present (SignalP predicted) Absence of transmembrane helices (TMHMM predicted)%3B~Family membership	gene	gene945	http://www.ncbi.nlm.nih.gov/gene/?term=azo0933
azo0934	azo0934	hflK	hflK	1000148	1001389	+	putative Hflk protein	Putative HflK protein. Homology to hflK of E. coli of 40%25 (sprot|HFLK_ECOLI). hflc and hflk govern the stability of phage lambda cii protein and have been proposed to encode or regulate a cii- specific protease. Pfam: SPFH domain/band 7 family no signal peptide 1 TMH%3B~Family membership	gene	gene946	http://www.ncbi.nlm.nih.gov/gene/?term=azo0934
azo0935	azo0935	hflC	hflC	1001389	1002270	+	conserved hypothetical protein HflC	Conserved hypothetical protein. Homology to hflC of E. coli of 37%25 (sprot|HFLC_ECOLI). hflc and hflk govern the stability of phage lambda cii protein and have been proposed to encode or regulate a cii- specific protease. Pfam: SPFH domain/ Band 7 family signal peptide%3B~Family membership	gene	gene947	http://www.ncbi.nlm.nih.gov/gene/?term=azo0935
azo0936	azo0936		azo0936	1002278	1002463	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE1283 of Nitrosomonas europaea of 60%25 (trembl|Q82V27). No domains predicted. Signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene948	http://www.ncbi.nlm.nih.gov/gene/?term=azo0936
azo0937	azo0937	hisZ	hisZ	1002471	1003625	+	conserved hypothetical ATP phosphoribosyltransferase regulatory subunit	Conserved hypothetical ATP phosphoribosyltransferase regulatory subunit Homology to hisZ of R. solanacearum of 57%25 (sprot|HISZ_RALSO). May allow the regulation of ATP phosphoribosyltransferase activity by histidine (By similarity). Tigrfam: hisS_second: histidyl-tRNA synthetase 2%2C putative no TNHs%3B~High confidence in function and specificity	gene	gene949	http://www.ncbi.nlm.nih.gov/gene/?term=azo0937
azo0938	azo0938	purA	purA	1003629	1004939	+	adenylosuccinate synthase	Adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS) (AMPSase). InterPro: Adenylosuccinate synthetase%3B~High confidence in function and specificity	gene	gene950	http://www.ncbi.nlm.nih.gov/gene/?term=azo0938
azo0939	azo0939	vacB	vacB	1005674	1008655	+	exoribonuclease II	Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein homolog). 3-exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A) poly(U) and ribosomal RNAs. Similar to SWISSPROT: sprot|RNR_ECOLI (38%25 Escherichia coli%2C ribonuclease R%3B RNase R / VacB protein) InterPro: IPR004476 3_prime_RNase. IPR003029 RNA binding S1. Pfam: PF00773 RNB-like protein. TIGRFAM: TIGR00358 VacB and RNase II family 3'-5' exoribonucleases.%3B~High confidence in function and specificity	gene	gene953	http://www.ncbi.nlm.nih.gov/gene/?term=azo0939
azo0940	azo0940		azo0940	1008648	1009412	+	tRNA/rRNA methyltransferase	Specificity unclear	gene	gene954	http://www.ncbi.nlm.nih.gov/gene/?term=azo0940
azo0941	azo0941		azo0941	1009579	1010880	+	probable nitrate regulatory protein	Probable nitrate regulatory protein%2C%3B~High confidence in function and specificity	gene	gene955	http://www.ncbi.nlm.nih.gov/gene/?term=azo0941
azo0942	azo0942	nasF	nasF	1011215	1012474	+	nitrate transport system%2C periplasmic-binding protein	Part of the ABC transporter complex NasFED involved in nitrate import. 59%25 Similar to the putative periplasmic-binding protein NasF in Klebsiella oxytoca. TREMBL:Q48466 InterPro:IPR010067%3B SsuA_fam.IPR006311%3B Tat. TIGRFAMs:TIGR01728%3B SsuA_fam%3B 1.TIGR01409%3B TAT_signal_seq%3B 1. Signal peptide present.%3B~High confidence in function and specificity	gene	gene956	http://www.ncbi.nlm.nih.gov/gene/?term=azo0942
azo0943	azo0943	nasE	nasE	1012491	1013423	+	putative nitrate transport system%2C permease protein	Nitrate transport permease protein nasE. 41%25 Similar to the nitrate permease protein%2C nrtB in Synechococcus sp.Part of the ABC transporter complex nrtBCD involved in nitrate import.Probably responsible for the translocation of the substrate across the membrane. SWISSPROT:NRTB_SYNP7.P38044. InterPro:IPR000515%3B BPD_transp.IPR005889%3B NtrB. Pfam:PF00528%3B BPD_transp%3B 1. TIGRFAMs:TIGR01183%3B ntrB%3B 1. TMHelix: 4.%3B~High confidence in function and specificity	gene	gene957	http://www.ncbi.nlm.nih.gov/gene/?term=azo0943
azo0944	azo0944	nasD	nasD	1013436	1014230	+	putative nitrate transport system%2C ATP-binding protein	Part of the ABC transporter complex nasFED involved in nitrate import. 64%25 Similar to the nitrate transport membrane protein%2C nasD in Klebsella oxytoca. Probably responsible for energy coupling to the transport system. SWISSPROT:NASD_KLEOX.P39459. InterPro:IPR003593%3B AAA_ATPase.IPR003439%3B ABC_transporter.IPR005890%3B NtrCD. Pfam:PF00005%3B ABC_tran%3B 1. TIGRFAMs:TIGR01184%3B ntrCD%3B 1.%3B~High confidence in function and specificity	gene	gene958	http://www.ncbi.nlm.nih.gov/gene/?term=azo0944
azo0945	azo0945	cobA1	cobA1	1014601	1015365	+	Uroporphyrin-III C-methyltransferase.	Uroporphyrin-III C-methyltransferase (EC 2.1.1.107) (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM). CATALYZES BOTH METHYLATIONS AT C-2 AND C-7 OF UROGEN III LEADING TO PRECORRIN-1 AND PRECORRIN-2%3B THEIR OXIDATIVE ESTERIFICATION GIVES RESPECTIVELY FACTOR I OCTAMETHYL ESTER AND SIROHYDROCHLORIN (BY SIMILARITY). dph5: diphthine synthase%3B~High confidence in function and specificity	gene	gene959	http://www.ncbi.nlm.nih.gov/gene/?term=azo0945
azo0946	azo0946	nasC	nasC	1015380	1016627	+	putative nitrate reductase small subunit	Putative nitrate reducatse small subunit. Homology to nasC of K. oxytoca of 38%25 (trembl|Q48467). NasC probably mediates electron transfer from NADH to NasA%2C the nitrate reductase. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulfide oxidoreductase no signal peptide no TMHs%3B~Family membership	gene	gene960	http://www.ncbi.nlm.nih.gov/gene/?term=azo0946
azo0947	azo0947	nasA	nasA	1016664	1019438	+	probable nitrate reductase	Probable Nitrate reductase. Homology to nasA of K. oxytoca of 41%25 (sprot|NASA_KLEOX). Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants fungi and bacteria. InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655) Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain no signal peptide no TMH Helixturnhelix motif%3B~High confidence in function and specificity	gene	gene961	http://www.ncbi.nlm.nih.gov/gene/?term=azo0947
azo0948	azo0948		azo0948	1019477	1020664	+	putative methyl-accepting chemotaxis protein	Putative methyl-accepting chemotaxis protein%2C%3B~Specificity unclear	gene	gene962	http://www.ncbi.nlm.nih.gov/gene/?term=azo0948
azo0949	azo0949		azo0949	1020736	1021629	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03002329 of Dechloromonas aromatica of 40%25 (gi|53730441|ref|ZP_00348795.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene963	http://www.ncbi.nlm.nih.gov/gene/?term=azo0949
azo0950	azo0950		azo0950	1021632	1023464	+	GGEF/EAL/PAS/PAC-domain containing protein	GGEF/EAL/PAS/PAC-domain containing protein	gene	gene964	http://www.ncbi.nlm.nih.gov/gene/?term=azo0950
azo0951	azo0951		azo0951	1023516	1023875	+	conserved hypothetical phosphomannose protein	50%25Cupin.IPR007113%3B Cupin_sup. Pfam:PF00190%3B Cupin%3B 1. 28%25	gene	gene965	http://www.ncbi.nlm.nih.gov/gene/?term=azo0951
azo0952	azo0952		azo0952	1024028	1024933	+	conserved hypothetical protein	Conserved hypothetical protein%2C 38%25 identity (50%25 similarity) to TrEMBL%3BQ7WXG4 Signal Peptide Present.TMH not Present. Has PF04471:Restriction endonuclease%3B(IPR007560:Mrr_cat):Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA. PF01396:Topoisomerase DNA binding C4 zinc finger%3B(IPR000380 DNA_tpisomrase):Prokaryotic topoisomerase I %2C otherwise known as relaxing enzyme%2Cuntwisting enzyme or swivelase%2C catalyses the ATP-independent breakage of single- stranded DNA%2C followed by passage and rejoining of another single-stranded DNA region [4]. This reaction brings about the conversion of one topological isomer of DNA into another: e.g.%2Crelaxation of superhelical turns%3B interconversion of simple and knotted rings of single-stranded DNA%3B and intertwisting of single-stranded rings of complementary sequences.%3B~Family membership	gene	gene966	http://www.ncbi.nlm.nih.gov/gene/?term=azo0952
azo0953	azo0953	nfsA	nfsA	1024961	1025785	-	putative oxygen-insentive NADPH nitroreductase	Putative oxygen-insensitive NADPH nitroreductase. Homology to snrA of S. typhimurium of 37%25 (sprot|NFSA_SALTY) REDUCTION OF NITROAROMATIC COMPOUNDS USING NADH. REDUCES NITROFURAZONE BY A PING-PONG BI-BI MECHANISM POSSIBLY TO GENERATE A TWO-ELECTRON TRANSFER PRODUCT. MAJOR COMPONENT OF THE OXYGEN- INSENSITIVE NITROREDUCTASE ACTIVITY IN E.COLI. Pfam: Nitroreductase family no signal peptide no TMHs%3B~Family membership	gene	gene967	http://www.ncbi.nlm.nih.gov/gene/?term=azo0953
azo0954	azo0954	isiB	isiB	1025891	1026424	-	probable flavodoxin	Probable flavodoxin. Homology to isiB of Synechococcus sp. of 45%25 (pir|B47673) Flavodoxins are electron-transfer proteins that function in various electron transport systems. Flavodoxins bind one FMN molecule%2C which serves as a redox-active prosthetic group and are functionally interchangeable with ferredoxins. Pfam: Flavodoxin no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene968	http://www.ncbi.nlm.nih.gov/gene/?term=azo0954
azo0955	azo0955	gufA	gufA	1026770	1027678	-	putative cation transporter protein	Putative GufA protein. 31%25 Zn_transpt_Zip.InterPro: ZIP Zinc transporter Pfam: PF02535%3B Zip%3B 1. TMHelix: 9. Signal peptide present.%3B~Specificity unclear	gene	gene969	http://www.ncbi.nlm.nih.gov/gene/?term=azo0955
azo0956	azo0956	cfa1	cfa1	1027781	1029013	-	probable cyclopropane-fatty-acyl-phospholipid synthase	Probable cyclopropane-fatty-acyl-phospholipid synthase. Homology to cfa of E. coli of 54%25 (Sprot:CFA_ECOLI) TRANSFERS A METHYLENE GROUP FROM S-ADENOSYL-L-METHIONINE TO THE CIS DOUBLE BOND OF AN UNSATURATED FATTY ACID CHAIN RESULTING IN THE REPLACEMENT OF THE DOUBLE BOND WITH A METHYLENE BRIDGE. Pfam: Cyclopropane-fatty-acyl-phosphotlipid no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene970	http://www.ncbi.nlm.nih.gov/gene/?term=azo0956
azo0957	azo0957	dnaX	dnaX	1029315	1031303	+	DNA polymerase III subunit Tau	DNA polymerase III subunit tau (EC 2.7.7.7) [Contains: DNA polymerase III subunit gamma]. The gamma chain seems to interact with the delta subunit to transfer the beta subunit on the DNA. InterPro: AAA-protein (ATPases associated with various cellular activities)%3B~High confidence in function and specificity	gene	gene971	http://www.ncbi.nlm.nih.gov/gene/?term=azo0957
azo0958	azo0958		azo0958	1031349	1031678	+	conserved hypothetical protein	conserved hypothetical protein Pfam: Uncharacterized BCR%2C YbaB family	gene	gene972	http://www.ncbi.nlm.nih.gov/gene/?term=azo0958
azo0959	azo0959		azo0959	1031759	1032358	+	recombination protein RecR	Region start changed from 1031918 to 1031759 (159 bases)	gene	gene973	http://www.ncbi.nlm.nih.gov/gene/?term=azo0959
azo0960	azo0960	petA1	petA1	1032540	1033133	+	probable ubiquinol-cytochrome c reductase iron-sulfur protein	Probable ubiquinol-cytochrome c reductase iron-sulfur protein (Rieske iron-sulfur protein) (RISP). Homology to petA of R. gelantinosus of 63%25 (trembl|Q93SY7). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. Pfam: Rieske [2Fe-2S] domain singal peptide no TMHs%3B~High confidence in function and specificity	gene	gene974	http://www.ncbi.nlm.nih.gov/gene/?term=azo0960
azo0961	azo0961	petB	petB	1033137	1034405	+	ubiquinol-cytochrome c reductase cytochrome b protein	Ubiquinol-cytochrome c reductase cytochrome b protein. Homology to petB of R. gelatinosus of 72%25 (trembl|Q93SY6). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity). Pfam: Cytochrome b (N-terminal)/b6/petB%3B cytochrome b (C-terminal)/b6/petD no signal peptide 10 TMHs%3B~High confidence in function and specificity	gene	gene975	http://www.ncbi.nlm.nih.gov/gene/?term=azo0961
azo0962	azo0962	petC	petC	1034402	1035157	+	conserved hypothetical ubiquinol-cytochrome c reductase cytochrome c1 protein	Conserved hypothetical ubiquinol-cytochrome c reductase cytochrome c1 protein. Homology to petC of R. solanacearum of 52%25 (trembl|Q8XVA4). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. c1 functions as an electron donor to cytochrome c. InterPro: Cytochrome c1 (IPR002326) Pfam: Cytochrome_c1 signal peptide 1 TMH%3B~Conserved hypothetical protein	gene	gene976	http://www.ncbi.nlm.nih.gov/gene/?term=azo0962
azo0963	azo0963	sspA2	sspA2	1035265	1035861	+	probable stringent starvation protein A	Probable Stringent starvation protein A. Homology to sspA of E. coli of 43%25 (sprot|SSPA_ECOLI). FORMS AN EQUIMOLAR COMPLEX WITH THE RNA POLYMERASE HOLOENZYME (RNAP) BUT NOT WITH THE CORE ENZYME. IT IS SYNTHESIZED PREDOMINANTLY WHEN CELLS ARE EXPOSED TO AMINO ACID STARVATION AT WHICH TIME IT ACCOUNTS FOR OVER 50%25 OF THE TOTAL PROTEIN SYNTHESIZED. Pfam: Glutatione S-transferase%2CN-terminale domaine no TMHs%3B~Family membership	gene	gene977	http://www.ncbi.nlm.nih.gov/gene/?term=azo0963
azo0964	azo0964	sspB	sspB	1035915	1036355	+	putative stringent starvation protein B	Putative stringent starvation protein B. Homology to sspB of E. coli of 38%25 (sprot|SSPB_ECOLI) Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known. Pfam: Stringent starvation protein B no signal peptide no TMHs	gene	gene978	http://www.ncbi.nlm.nih.gov/gene/?term=azo0964
azo0965	azo0965		azo0965	1036339	1037562	-	glycosyltransferase	InterPro: Glycosyl transferases group 1%3B~Family membership	gene	gene979	http://www.ncbi.nlm.nih.gov/gene/?term=azo0965
azo0966	azo0966		azo0966	1037729	1038217	+	Hemerythrin-like protein	Hemerythrin-like protein%2C 49%25 Identity to SProt%3BQ8Y1B3. Has PF01814%2C Hemerythrin HHE cation binding domain%3B IPR002063%2C Hemerythrin%3B Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor P80255 binds Cadmium so as to protect the organism from toxicity . However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96 is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands. In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger.	gene	gene980	http://www.ncbi.nlm.nih.gov/gene/?term=azo0966
azo0967	azo0967	dadA1	dadA1	1038235	1039485	-	probable D-amino acid dehydrogenase small subunit	The L-alanine catabolic pathway proceeds in two steps: racemization of the L-isomer to D-alanine by alanine racemase and oxidative deamination of D-alanine to pyruvate and ammonia by D- amino acid dehydrogenase. Similar to trembl|Q7NRT8 (52%25) and to sprot|DADA_ECOLI (40%25). Pfam (PF01266): D-amino acid oxidase%3B~Specificity unclear	gene	gene981	http://www.ncbi.nlm.nih.gov/gene/?term=azo0967
azo0968	azo0968	cbbF	cbbF	1039663	1040664	+	putative fructose-1%2C6-bisphosphatase	Fructose-16-bisphosphatase cytosolic(D-fructose-16-bisphosphate 1-phosphohydrolase) (FBPase).Involved in the reaction: D-fructose 1%2C6-bisphosphate + H(2)O %3D D-fructose 6-phosphate + phosphate.%2C 62%25 In_FB_phphtase. Pfam:PF00316%3B FBPase%3B 1.%3B~High confidence in function and specificity	gene	gene982	http://www.ncbi.nlm.nih.gov/gene/?term=azo0968
azo0969	azo0969		azo0969	1040676	1042403	+	conserved hypothetical outer membrane protein	conserved hypothetical outer membrane protein. Homology to ne0930 of N. europaea of 44%25 (trembl|Q82VX0) Pfam: Bacterial surface protein signal peptide no TMHs%3B~Family membership	gene	gene983	http://www.ncbi.nlm.nih.gov/gene/?term=azo0969
azo0970	azo0970		azo0970	1042491	1043462	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bb3356 of B. bronchiseptica of 83%25 (trembl|Q7WH54). Pfam: DUF534 This is a family of putative secreted proteins of unknown function. signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene984	http://www.ncbi.nlm.nih.gov/gene/?term=azo0970
azo0971	azo0971		azo0971	1043538	1044428	+	conserved hypothetical ABC transporter%2C permease protein	Conserved hypothetical ABC transporter%2C permease protein. PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) (IPR001851) Pfam: Branched-chain amino acid transport system/permease component no signal peptide 8 TMHs 2A78: Carboxylate/Amino Acid/Amine Tran%3B~Specificity unclear	gene	gene985	http://www.ncbi.nlm.nih.gov/gene/?term=azo0971
azo0972	azo0972		azo0972	1044430	1045224	+	probable ABC transporter%2C ATP-binding protein	Thiamine transport ATP-binding protein thiQ. PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM TBPA-THIPQ FOR THIAMINE AND TPP. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. TREMBL:Q7WH56: 84%25 identity%2C 92%25 similarity Description:putative abc-transporter atp-binding component InterPro: IPR003593%3B AAA_ATPase. IPR003439%3B ABC_transporter. Pfam:PF00005%3B ABC_tran%3B ProDom PD000006%3B ABC_transporter%3B 1. SMART SM00382%3B AAA recf: DNA replication and repair protein NO transmembrane helices%3B~Function unclear	gene	gene986	http://www.ncbi.nlm.nih.gov/gene/?term=azo0972
azo0973	azo0973	groES1	groES1	1045436	1045726	+	chaperonin GroES	Chaperonin GroES. Homolgy to groES of B. japonicum of 61%25 (sprot|CH11_BRAJA) Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. InterPro: Chaperonins cpn10 (10 Kd subunit)(IPR001476) Pfam: Chaperonin 10 kd subunit no signal peptide no TMH%3B~High confidence in function and specificity	gene	gene987	http://www.ncbi.nlm.nih.gov/gene/?term=azo0973
azo0974	azo0974	groEL1	groEL1	1045775	1047424	+	chaperonin GroEL	Chaperonin GroEL. Homology to groEL of B. japonicum of 62%25 (SWISSPROT:CH61_BRAJA). Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity). no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene988	http://www.ncbi.nlm.nih.gov/gene/?term=azo0974
azo0975	azo0975	basR	basR	1047710	1048396	+	probable two-component response regulatory protein	Probable two-component response regulatory protein%2CResponse_reg. IPR001867%3B Trans_reg_C. Pfam: PF00072%3B response_reg. PF00486%3B trans_reg_C. SMART: SM00448%3B REC.%3B~Specificity unclear	gene	gene989	http://www.ncbi.nlm.nih.gov/gene/?term=azo0975
azo0976	azo0976	basS	basS	1048371	1049858	+	putative two-component system histidine kinase	Putative two-component system histidine kinase%2C%3B~Specificity unclear	gene	gene990	http://www.ncbi.nlm.nih.gov/gene/?term=azo0976
azo0977	azo0977		azo0977	1050037	1050345	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to XCC4058 of Xanthomonas campestris of 55%25 (trembl|Q8P3L3) Has PF04341%2C Protein of unknown function%2CDUF485%3B IPR007436%3BThis family includes several putative integral membrane proteins. no signal peptide 1 TMH%3B~Conserved hypothetical protein	gene	gene991	http://www.ncbi.nlm.nih.gov/gene/?term=azo0977
azo0978	azo0978		azo0978	1050342	1052060	+	conserved hypothetical sodium:solute symporter	Conserved hypothetical sodium:solute symporter. Homology to an orf of R. capsulata of 81%25 (trembl|O68042). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force%2C SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars%2C amino acids%2C nucleosides%2Cinositols%2C vitamins%2C urea or anions%2C depending on the system. Tigrfam: sss: SSS sodium solute transporter superfamily Pfam: Sodium:solute transporter family signal peptide 13 TMHs%3B~Family membership	gene	gene992	http://www.ncbi.nlm.nih.gov/gene/?term=azo0978
azo0979	azo0979	tctD	tctD	1052174	1052845	-	probable transcriptional regulatory protein	Probable transcriptional regulatory protein%2CResponse_reg. IPR001867%3B Trans_reg_C. Pfam: PF00072%3B response_reg. PF00486%3B trans_reg_C. SMART: SM00448%3B REC. Transcriptional regulatory protein tctD. TRANSCRIPTIONAL ACTIVATOR OF THE TCTI TRICARBOXYLATE TRANSPORT SYSTEM OPERON.%3B~Specificity unclear	gene	gene993	http://www.ncbi.nlm.nih.gov/gene/?term=azo0979
azo0980	azo0980		azo0980	1053183	1054436	+	HemA protein	Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR). catalytic activity: glutamyl-trna(glu) + nadph %3D glutamate-1- semialdehyde + nadp(+) + trna(glu). pathway: porphyrin biosynthesis by the c5 pathway%3B first step. similarity: belongs to the glutamyl-trna reductase family.%3B~High confidence in function and specificity	gene	gene995	http://www.ncbi.nlm.nih.gov/gene/?term=azo0980
azo0981	azo0981	prfA	prfA	1054469	1055554	+	peptide chain release factor	Peptide chain release factor 1 (RF-1). Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.%3B~High confidence in function and specificity	gene	gene996	http://www.ncbi.nlm.nih.gov/gene/?term=azo0981
azo0982	azo0982	hemK	hemK	1055551	1056387	+	HemK protein	Protein methyltransferase hemK (EC 2.1.1.-) (Protein-glutamine N- methyltransferase hemK) (Protein-(glutamine-N5) MTase hemK) (M.StyLTHemKP). Methylates the translation termination release factor RF1 on Gln-235 and RF2 on Gln-252.%3B~Family membership	gene	gene997	http://www.ncbi.nlm.nih.gov/gene/?term=azo0982
azo0983	azo0983		azo0983	1056474	1056797	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne1911 of N. europaea of 67%25. InterPro: Glutaredoxin-related protein (IPR004480) TIGR00365: glutaredoxin-related protein no signal peptide no TMHs	gene	gene998	http://www.ncbi.nlm.nih.gov/gene/?term=azo0983
azo0984	azo0984		azo0984	1056828	1057925	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to NE1634 of Nitrosomonas europaea of 34%25 (trembl|Q82U71(SRS)) No domains predicted. No TMHs Signal peptide present.%3B~Conserved hypothetical protein	gene	gene999	http://www.ncbi.nlm.nih.gov/gene/?term=azo0984
azo0985	azo0985		azo0985	1057916	1058776	-	conserved hypothetical protein	Conserved hypothetical protein%2C 35%25 identity (56%25 similarity) to TrEMBL%3BQ82U70. Signal peptide Present. No TMH reported Present.	gene	gene1000	http://www.ncbi.nlm.nih.gov/gene/?term=azo0985
azo0986	azo0986		azo0986	1058789	1059091	-	Hypothetical protein	Hypothetical Protein. No Good functional or similar proteins matching in the database. No domains%2C repeats%2Cmotifs or features present.	gene	gene1001	http://www.ncbi.nlm.nih.gov/gene/?term=azo0986
azo0987	azo0987		azo0987	1059121	1059837	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. No homology to data bank. no domains predicted. no signal peptide. no TMHs	gene	gene1002	http://www.ncbi.nlm.nih.gov/gene/?term=azo0987
azo0988	azo0988		azo0988	1060017	1061303	-	putative serine/threonine protein kinase	Putative serine/threonine protein kinase%2C%3B~Family membership	gene	gene1003	http://www.ncbi.nlm.nih.gov/gene/?term=azo0988
azo0989	azo0989	argH	argH	1061310	1062752	-	ArgH protein	Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase) (ASAL).%3B~High confidence in function and specificity	gene	gene1004	http://www.ncbi.nlm.nih.gov/gene/?term=azo0989
azo0990	azo0990	algZ	algZ	1062841	1063866	+	putative alginate biosynthesis protein AlgZ/FimS	Putative alginate biosynthesis protein AlgZ/FimS%2C%3B~High confidence in function and specificity	gene	gene1005	http://www.ncbi.nlm.nih.gov/gene/?term=azo0990
azo0991	azo0991	algR	algR	1063863	1064624	+	probable alginate biosynthesis regulatory protein AlgR	Probable alginate biosynthesis regulatory protein AlgR%2C%3B~High confidence in function and specificity	gene	gene1006	http://www.ncbi.nlm.nih.gov/gene/?term=azo0991
azo0992	azo0992	ppc	ppc	1064654	1067407	-	probable phosphoenolpyruvate carboxylase	Probable phosphoenolpyruvate carboxylase. Homology to ppc of R. palustris of 61%25 (sprot|CAPP_RHOPA). Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Pfam: Phosphonenolpyruvate carboxylase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1007	http://www.ncbi.nlm.nih.gov/gene/?term=azo0992
azo0993	azo0993	hemC	hemC	1067713	1068663	+	hydroxymethylbilane synthase	Porphobilinogen deaminase (HMBS). Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane preuroporphyrinogen in several discrete steps. InterPro: Porphobilinogen deaminase hemC: porphobilinogen deaminase%3B~High confidence in function and specificity	gene	gene1008	http://www.ncbi.nlm.nih.gov/gene/?term=azo0993
azo0994	azo0994	hemD	hemD	1068679	1069476	+	HemD protein	Uroporphyrinogen-III synthase (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing]). catalytic activity: hydroxymethylbilane %3D uroporphyrinogen-iii + h(2)o. pathway:porphyrin biosynthesis%3B fourth step. ribH: riboflavin synthase beta subunit%3B~Specificity unclear	gene	gene1009	http://www.ncbi.nlm.nih.gov/gene/?term=azo0994
azo0995	azo0995	hemX	hemX	1069486	1070682	+	Uroporphyrin-III C-methyltransferase	Putative uroporphyrin-III C-methyltransferase. catalytic activity: 2 s-adenosyl-l-methionine + uroporphyrin iii %3D 2 s-adenosyl-l-homocysteine + sirohydrochlorin. pathway: siroheme and cobalamin biosynthesis.%3B~Specificity unclear	gene	gene1010	http://www.ncbi.nlm.nih.gov/gene/?term=azo0995
azo0996	azo0996	hemY	hemY	1070695	1071894	+	HemY protein	HemY protein. involved in a late step of protoheme ix synthesis.%3B~High confidence in function and specificity	gene	gene1011	http://www.ncbi.nlm.nih.gov/gene/?term=azo0996
azo0997	azo0997	glcC	glcC	1072050	1072769	+	glc operon transcriptional activator	Glc operon transcriptional activator%2C%3B~High confidence in function and specificity	gene	gene1012	http://www.ncbi.nlm.nih.gov/gene/?term=azo0997
azo0998	azo0998	glcD1	glcD1	1072863	1074362	+	probable glycolate oxidase subunit GlcD	Probable glycolate oxidase subunit glcD. Homology to glcD of E. coli of 64%25 (sprot|GLCD_ECOLI) InterPro: FAD linked oxidase C-terminal (IPR004113)%3B FAD linked oxidase N-terminal (IPR006093) Pfam: FAD binding domain%3B FAD linked oxidase%2C C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1013	http://www.ncbi.nlm.nih.gov/gene/?term=azo0998
azo0999	azo0999		azo0999	1074367	1074513	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal pepitde. 1 TMH	gene	gene1014	http://www.ncbi.nlm.nih.gov/gene/?term=azo0999
azo1000	azo1000	glcE	glcE	1074510	1075571	+	probable glycolate oxidase subunit GlcE	Probable glycolate oxidase subunit GlcE. Homology to glcE of E. coli of 47%25 (sprot|GLCE_ECOLI) InterPro: FAD linked oxidase N-terminal (IPR006093) Pfam: FAD binding domain Tigrfam: glcD: glycolate oxidase subunit GlcD no singla peptide no TMHs%3B~High confidence in function and specificity	gene	gene1015	http://www.ncbi.nlm.nih.gov/gene/?term=azo1000
azo1001	azo1001	glcF	glcF	1075575	1076819	+	probable glycolate oxidase iron-sulfur subunit	Probable glycolate oxidase iron-sulfur subunit. Homology to glcF of E. coli of 56%25 (sprot|GLCF_ECOLI) Pfam: Domain of unknown function (DUF224) (192-256 aa%3B 329-391 aa) no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1016	http://www.ncbi.nlm.nih.gov/gene/?term=azo1001
azo1002	azo1002		azo1002	1076945	1077721	+	putative phosphoprotein phosphatase	Putative phosphoprotein phosphatase%2C%3B~Conserved hypothetical protein	gene	gene1017	http://www.ncbi.nlm.nih.gov/gene/?term=azo1002
azo1003	azo1003	pntAA	pntAA	1077900	1079021	+	probable NAD(P) transhydrogenase%2C subunit alpha part 1	Probable NAD(P) transhydrogenase%2C subunit alpha part 1. Homology to pntAA of R. rubrum of 44%25 (sprot|PNAA_RHORU). The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. Tirfam: pntA: NAD(P) transhydrogenase alpha subunit Pfam: Alanine dehydrogenase/pyridine nucleotide dehydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1018	http://www.ncbi.nlm.nih.gov/gene/?term=azo1003
azo1004	azo1004	pntAB	pntAB	1079035	1079343	+	conserved hypothetical NAD(P) transhydrogenase%2Csubunit alpha part 2	Conserved hypothetical NAD(P) transhydrogenase%2Csubunit alpha part 2. Homology to pntA of X. axonopodis of 74%25 (trembl|Q8PNW6). The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. 3 TMHs no signal peptide%3B~High confidence in function and specificity	gene	gene1019	http://www.ncbi.nlm.nih.gov/gene/?term=azo1004
azo1005	azo1005	pntB	pntB	1079340	1080719	+	probable NAD(P) transhydrogenase%2C subunit beta	Probable NAD(P) transhydrogenase%2C subunit beta. Homology to pntB of R. rubrum of 46%25 (sprot|PNTB_RHORU) The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. Pfam: NAD(P) transhydrogenase beta subunit signal peptide 7 TMHs%3B~High confidence in function and specificity	gene	gene1020	http://www.ncbi.nlm.nih.gov/gene/?term=azo1005
azo1006	azo1006		azo1006	1080834	1081184	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene1021	http://www.ncbi.nlm.nih.gov/gene/?term=azo1006
azo1007	azo1007		azo1007	1081178	1083613	-	hypothetical signaling protein	Hypothetical signaling protein	gene	gene1022	http://www.ncbi.nlm.nih.gov/gene/?term=azo1007
azo1008	azo1008	rhlE2	rhlE2	1083711	1085195	-	putative ATP-dependent RNA helicase	Putative ATP-dependent RNA helicase rhlE.%3B~Family membership	gene	gene1023	http://www.ncbi.nlm.nih.gov/gene/?term=azo1008
azo1009	azo1009		azo1009	1085393	1086487	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to xcc0816 of X. campestris of 49%25 (trembl|Q8PCB8) Pfam: FtsJ-like methyltransferase no signal peptide no TMHs	gene	gene1024	http://www.ncbi.nlm.nih.gov/gene/?term=azo1009
azo1010	azo1010	tas	tas	1086606	1087658	+	probable oxidoreductase Tas	Probable oxidoreductase Tas. Homology to tas of E. coli of 51%25 (sprot|TAS_ECOLI). InterPro: Aldo/keto reductase family (IPR001395) Pfam: Aldo/keto reductase family no signal peptide no TMHs%3B~Function unclear	gene	gene1025	http://www.ncbi.nlm.nih.gov/gene/?term=azo1010
azo1011	azo1011		azo1011	1087666	1088040	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Rgel02001790 of Rubrivivax gelatinosus of 45%25 (gi|47573892|ref|ZP_00243929.1|(NBCI ENTREZ)) . No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene1026	http://www.ncbi.nlm.nih.gov/gene/?term=azo1011
azo1012	azo1012	ugpB	ugpB	1088233	1089531	+	putative glycerol-3-phosphate-binding periplasmic protein	Glycerol-3-phosphate-binding periplasmic protein precursor. SN-glycerol-3-phosphate and glycerophosphoryl diester-binding protein interacts with the binding protein-dependent transport system ugpACE. 30%25 SBP_bac_1.IPR006061%3B SBP_dom1. Pfam:PF01547%3B SBP_bac_1%3B 1. Signal peptide:present.%3B~High confidence in function and specificity	gene	gene1027	http://www.ncbi.nlm.nih.gov/gene/?term=azo1012
azo1013	azo1013	ugpQ	ugpQ	1089536	1090285	+	probable glycerophosphodiester phosphodiesterase	Probable glycerophosphodiester phosphodiesterase. Homology to ugpQ of E. coli of 45%25 (sprot|UGPQ_ECOLI). GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE HYDROLYZES DEACYLATED PHOSPHOLIPIDS TO G3P AND THE CORRESPONDING ALCOHOLS. Pfam: Glycerophosporyl diester phosphodiesterase no signal peptide%3B~High confidence in function and specificity	gene	gene1028	http://www.ncbi.nlm.nih.gov/gene/?term=azo1013
azo1014	azo1014	ispB	ispB	1090402	1091427	+	octaprenyl-diphosphate synthase	Polyprenyl synthetase%2C82%25 identity to TrEMBL%3BQ5P1Y1. Has Pfam%3BPF00348%2C Polyprenyl synthetase.(IPR000092%2CPolyprenyl_synt)A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol%2C dolichol%2C ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA%2C isoprenoid quinones%2C and sugar carrier lipids. Among the enzymes that participate in that pathway%2C are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.%3B~High confidence in function and specificity	gene	gene1029	http://www.ncbi.nlm.nih.gov/gene/?term=azo1014
azo1015	azo1015		azo1015	1091631	1092566	+	probable transcriptional regulator%2C LysR family	Probable transcriptional regulator%2C LysR family%2C%3B~Family membership	gene	gene1031	http://www.ncbi.nlm.nih.gov/gene/?term=azo1015
azo1016	azo1016	lldA	lldA	1092645	1093793	+	L-lactate dehydrogenase	L-lactate dehydrogenase. Homology to lldA of N. meningitidis of 72%25 (trembl|Q51135). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262)%3B Proteins binding FMN and related compounds core region (IPR003009 Pfam: FMN-dependent dehydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1032	http://www.ncbi.nlm.nih.gov/gene/?term=azo1016
azo1017	azo1017	comL	comL	1093840	1094649	-	probable competence lipoprotein precursor	probable competence lipoprotein comL precursor. Homology to comL of N. gonorrhoeae of 47%25 (sprot|COML_NEIGO(SRS)) REQUIRED FOR EFFICIENT TRANSFORMATION OF NEISSERIA MENINGITIDIS BY SPECIES-RELATED DNA (By similarity). InterPro: TPR repeat (IPR001440) no signal peptide no TMH ccoS: cytochrome oxidase maturation pro%3B~High confidence in function and specificity	gene	gene1033	http://www.ncbi.nlm.nih.gov/gene/?term=azo1017
azo1018	azo1018	rluD	rluD	1094663	1095637	+	pseudouridylate synthase	Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil at positions 1911 1915 and 1917 in 23S ribosomal RNA.%3B~Family membership	gene	gene1034	http://www.ncbi.nlm.nih.gov/gene/?term=azo1018
azo1019	azo1019		azo1019	1095700	1096395	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV2191 of C.violaceum of 64%25 (tremble:Q7NVZ9). Has PF02578%2CUncharacterised ACR%2C YfiH family COG1496. InterPro%3BIPR003730. No signal peptide. No TMHs. TIGR00726: conserved hypothetical protein	gene	gene1035	http://www.ncbi.nlm.nih.gov/gene/?term=azo1019
azo1020	azo1020		azo1020	1096434	1096655	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS03993 of R.solanacearum of 48%25 (trembl|Q8XYX6(SRS)). No domains. No signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene1036	http://www.ncbi.nlm.nih.gov/gene/?term=azo1020
azo1021	azo1021	phaC	phaC	1096743	1098485	+	probable polyhydroxyalkanoate synthase	Entry name :- TREMBL:Q9ZB54 Prim. accession # Q9ZB54 Identities %3D 290/560 (51%25) InterPro:- IPR000073%3B A/b_hydrolase. IPR010941%3B PhaC_N. Pfam:- PF00561%3B Abhydrolase_1%3B 1. PF07167%3B PhaC_N%3B 1. Prediction: Signal peptide Signal peptide probability: 0.999 Number of predicted TMHs: 0%3B~Family membership	gene	gene1037	http://www.ncbi.nlm.nih.gov/gene/?term=azo1021
azo1022	azo1022	phbB1	phbB1	1098596	1099336	+	Acetoacetyl-CoA reductase	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CSWISSPROT:P14697 (60%25 identity)%3B TREMBL:Q8XYX3 (59%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~High confidence in function and specificity	gene	gene1038	http://www.ncbi.nlm.nih.gov/gene/?term=azo1022
azo1023	azo1023	phbB2	phbB2	1099528	1100268	+	Acetoacetyl-CoA reductase	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CSWISSPROT:P14697 (62%25 identity)%3B TREMBL:Q8XYX3 (62%25 identiy). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase. SignalP reporting signal peptide.%3B~High confidence in function and specificity	gene	gene1039	http://www.ncbi.nlm.nih.gov/gene/?term=azo1023
azo1024	azo1024	phbF	phbF	1100389	1101018	+	conserved hypothetical protein	phbF protein%2C 57%25 identity to TrEMBL%3BQ7NYA7. Has 2 copies of PF05233%2C PHB accumulation regulatory domain%3BIPR007897%2C PHB_accumulat: The proteins this domain is found in are typically involved in regulating polymer accumulation in bacteria%2C particularly poly-beta-hydroxybutyrate (PHB)%3B~High confidence in function and specificity	gene	gene1040	http://www.ncbi.nlm.nih.gov/gene/?term=azo1024
azo1025	azo1025		azo1025	1101080	1102411	+	hypothetical protein	conserved hypothetical protein%3B~Family membership%3B~ORF2	gene	gene1041	http://www.ncbi.nlm.nih.gov/gene/?term=azo1025
azo1026	azo1026	ychK	ychK	1102525	1103373	+	probable esterase	Hypothetical protein ychK. TREMBL:Q89IT4: 42%25 identity%2C 58%25 similarity InterPro: Uncharacterized protein family UPF0028 InterPro:IPR002641%3B Patatin. Pfam:PF01734%3B Patatin hypA: hydrogenase expression/formation Non-secretory protein with signalpeptide probability:0.141 (SignalP predicted) Absence of TMH's%3B~Family membership	gene	gene1042	http://www.ncbi.nlm.nih.gov/gene/?term=azo1026
azo1027	azo1027	glcD2	glcD2	1103397	1104803	+	putative glycolate oxidase subunit GlcD	Putative glycolate oxidase subunit GlcD. Homology to glcD of E. coli of 32%25 (sprot|GLCD_ECOLI). InterPro: FAD linked oxidase C-terminal (IPR004113)%3Bm FAD linked oxidas%2C N-terminal (IPR006093) Pfam: FAD binding domain%3B FAD linked oxidase%2C C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~Family membership	gene	gene1043	http://www.ncbi.nlm.nih.gov/gene/?term=azo1027
azo1028	azo1028	hbdA	hbdA	1105799	1106650	+	probable 3-hydroxybutyryl-CoA dehydrogenase	Activity:- (S)-3-hydroxybutanoyl-CoA + NADP+ %3D 3-acetoacetyl-CoA + NADPH + H+ Entry name :- TREMBL:Q89GX2 Prim. accession # Q89GX2 Identities %3D 177/280 (63%25) InterPro:- IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. IPR008927%3B 6DGDH_C_like. IPR000205%3B NAD_BS. Pfam :-PF00725%3B 3HCDH%3B 1. PF02737%3B 3HCDH_N%3B 1. Prediction: Signal peptide Signal peptide probability: 0.873 Number of predicted TMHs: 0%3B~Family membership	gene	gene1050	http://www.ncbi.nlm.nih.gov/gene/?term=azo1028
azo1029	azo1029	rho	rho	1106727	1108178	-	transcription termination factor Rho	Transcription termination factor rho. Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA activation of Rhos RNA-dependent ATPase activity and release of the mRNA from the DNA template. Similar to SWISSPROT: sprot|RHO_ECOLI (60%25 Escherichia coli%2C transcription termination factor Rho) InterPro: IPR000194 ATPase_a/bcentre. IPR003593 AAA_ATPase. IPR004665 Term_rho. IPR002059 Cold_shock. Pfam: PF00006 ATP-synt_ab. TIGRFAM: TIGR00767 transcription termination factor Rho.%3B~High confidence in function and specificity	gene	gene1051	http://www.ncbi.nlm.nih.gov/gene/?term=azo1029
azo1030	azo1030	trxA1	trxA1	1108162	1108488	-	thioredoxin-disulfide reductase	Thioredoxin-disulfide reductase. Homology to trxA of T. ferrooxidans of 69%25 (THIO_THIFE). Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide. InterPro: Thioredoxin (IPR006662) Pfam: Thioredoxin no signal peptide no TMHs%3B~Specificity unclear	gene	gene1052	http://www.ncbi.nlm.nih.gov/gene/?term=azo1030
azo1031	azo1031	fdxA	fdxA	1108784	1109107	+	probable ferredoxin	Probable ferredoxin. Homology to fdxA of A. vineladii of 66%25 (sprot|FER1_AZOVI(SRS)). FERREDOXINS ARE IRON-SULFUR PROTEINS THAT TRANSFER ELECTRONS IN A WIDE VARIETY OF METABOLIC REACTIONS. THIS FERREDOXIN COULD PLAY A ROLE IN REGULATING GENE EXPRESSION BY INTERACTING DIRECTLY WITH DNA. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain IPR001450)%3B 7Fe ferredoxin (IPR000813) Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1053	http://www.ncbi.nlm.nih.gov/gene/?term=azo1031
azo1032	azo1032		azo1032	1109179	1109628	+	conserved hypothetical protein	TREMBL:Q8XZ43%3B 52%25 identity%2C 70%25 similarity. TREMBL:Q8F5Y8%3B 30%25 identity%2C 56%25 similarity. Protein At5g10860 mitochondrial precursor. IPR000644: CBS domain Pfam:PF00571 - GARS_N TIGRFAM: rrf2 family%2C KpsF/GutQ family (by similarity) kpsF: KpsF/GutQ family protein%3B~Specificity unclear	gene	gene1054	http://www.ncbi.nlm.nih.gov/gene/?term=azo1032
azo1033	azo1033	fadD1	fadD1	1109767	1111458	+	Long-chain-fatty-acid-CoA ligase	Esterification concomitant with transport of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids%2C TREMBL:Q7NY16 (61%25 identity)%3B TREMBL:Q7WLG0 (63%25 identity). InterPro (IPR000873): AMP-dependent synthetase and ligase Pfam (PF00501): AMP-binding enzyme.%3B~High confidence in function and specificity	gene	gene1055	http://www.ncbi.nlm.nih.gov/gene/?term=azo1033
azo1034	azo1034	ilvB	ilvB	1111730	1113397	+	acetolactate synthase	Acetolactate synthase isozyme I large subunit (AHAS-I) (Acetohydroxy-acid synthase I large subunit) (ALS-I). InterPro: Acetolactate synthase large subunit biosynthetic type acolac_lg: acetolactate synthase large subunit%2Cbiosynthetic type%3B~High confidence in function and specificity	gene	gene1056	http://www.ncbi.nlm.nih.gov/gene/?term=azo1034
azo1035	azo1035	ilvN	ilvN	1113400	1113714	+	acetolactate synthase	Acetolactate synthase isozyme I small subunit (EC 2.2.1.6) (AHAS-I) (Acetohydroxy-acid synthase I small subunit) (ALS-I). InterPro: Acetolactate synthase small subunit acolac_sm: acetolactate synthase small subunit%3B~High confidence in function and specificity	gene	gene1057	http://www.ncbi.nlm.nih.gov/gene/?term=azo1035
azo1036	azo1036	aroC	aroC	1113825	1114961	+	AroC protein	Chorismate synthase%2C AroC. It catalyzes the 1%2C4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine%2C tyrosine or tryptophan biosynthesis. Similar to sprot|AROC_VIBAN (60%25) and to sprot|AROC_ECOLI (61%25). TIGRFAM: chorismate synthase%2C aroC Pfam : Chorismate synthase%3B~High confidence in function and specificity	gene	gene1058	http://www.ncbi.nlm.nih.gov/gene/?term=azo1036
azo1037	azo1037		azo1037	1114958	1116148	+	putative MFS metabolite transporter	Putative transport protein. Similarity to sugar transporters (lacY): lactose permease 2A0105.Similar to POT family of proteins with DUF domains and 12 transmembrane helices. 31%25 identity and 47%25 similarity to putative MFS metabolite transporter from Pseudomonas aeruginosa PA01%3B~Family membership	gene	gene1059	http://www.ncbi.nlm.nih.gov/gene/?term=azo1037
azo1038	azo1038		azo1038	1116163	1116984	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bb2112 of B. bronchiseptica of 55%25 (trembl|Q7WKJ4). Pfam: Peptidase family M48 signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1060	http://www.ncbi.nlm.nih.gov/gene/?term=azo1038
azo1039	azo1039	leuC	leuC	1117079	1118488	+	LeuC protein	3-isopropylmalate dehydratase large subunit%2C%3B~High confidence in function and specificity	gene	gene1061	http://www.ncbi.nlm.nih.gov/gene/?term=azo1039
azo1040	azo1040	leuD	leuD	1118505	1119143	+	LeuD protein	3-isopropylmalate dehydratase small subunit%2C leuD. Similar to sprot|LEUD_AZOVI (78%25). 3-isopropylmalate dehydratase bind a Fe-4S iron-sulphur cluster and is split into large (leuC) and small chains in eubacteria. TIGRFAM: 3-isopropylmalate dehydratase%2C small%2C leuD Pfam: Aconitase C-terminal domain%3B~High confidence in function and specificity	gene	gene1062	http://www.ncbi.nlm.nih.gov/gene/?term=azo1040
azo1041	azo1041	leuB	leuB	1119180	1120244	+	3-isopropylmalate dehydrogenase	3-isopropylmalate dehydrogenase%2C leuB. Similar to sprot|LEU3_PSEAE (70%25). 3-isopropylmalate dehydrogenase (IMDH) catalyzes the third step in the biosynthesis of leucine in bacteria and fungi%2C the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. InterPro (PF00180): Isocitrate and isopropylmalate dehydrogenases TIGRFAM : 3-isopropylmalate dehydrogenase%2C leuB%3B~High confidence in function and specificity	gene	gene1063	http://www.ncbi.nlm.nih.gov/gene/?term=azo1041
azo1042	azo1042	asd	asd	1120327	1121427	+	Asd protein	Aspartate-semialdehyde dehydrogenase%2C an enzyme involved in the biosynthesis of various amino acids from aspartate. Similar to sprot|DHAS_ECOLI (67%25) and to trembl|Q845W2 (75%25). Pfam: Semialdehyde dehydrogenase%2Cdimerisation Pfam: Semialdehyde dehydrogenase%2C NAD binding%3B~High confidence in function and specificity	gene	gene1064	http://www.ncbi.nlm.nih.gov/gene/?term=azo1042
azo1043	azo1043	fimV1	fimV1	1121643	1124558	+	putative type 4 pilus biogenesis	In Pseudomonas aeruginosa%2C FimV ist probable involved in remodelling of the peptidoglycan layer to enable assembly of the type IV fimbrial structure and machinery. And it is also required for twitching motility. Similar to trembl|O87015 (28%25). Pfam (PF01476): LysM domain Pfam (PF04102): SlyX%2C may be a coiled-coil structure SignalP reporting Signal peptide%3B~Function unclear	gene	gene1065	http://www.ncbi.nlm.nih.gov/gene/?term=azo1043
azo1044	azo1044		azo1044	1124621	1125232	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA4769 of Azoarcus sp. EbN1 of 53%25 (gnl|keqq|eba:ebA4769(KEGG)). Pfam: Cobalt transport protein. signal peptide. 3 TMHs%3B~Family membership	gene	gene1066	http://www.ncbi.nlm.nih.gov/gene/?term=azo1044
azo1045	azo1045		azo1045	1125226	1126023	+	pseudouridine synthase A	Formation of pseudouridine at positions 38 39 and 40 in the anticodon stem and loop of transfer RNAs. InterPro: tRNA pseudouridine synthase%3B~High confidence in function and specificity	gene	gene1067	http://www.ncbi.nlm.nih.gov/gene/?term=azo1045
azo1046	azo1046	trpF	trpF	1126024	1126647	+	N-(5'-phosphoribosyl)anthranilate isomerase	N-(5-phosphoribosyl)anthranilate isomerase (PRAI) catalyzes the third step of tryptophan biosynthesis. Similar to sprot|TRPF_RALSO (56%25) and to sprot|TRPF_PSEAE (58%25). Pfam (PF00697): N-(5'phosphoribosyl)anthranilate isomerase (PRAI)%3B~High confidence in function and specificity	gene	gene1068	http://www.ncbi.nlm.nih.gov/gene/?term=azo1046
azo1047	azo1047	trpB	trpB	1126595	1127848	+	TrpB protein	Tryptophan synthase beta chain is for the synthesis of tryptophan from indole and serine. Similar to sprot|TRPB_RALSO (83%25) and to sprot|TRPB_PSEAE (68%25). TIGRFAM: trpB%2C tryptophan synthase%2C beta subunit%3B~High confidence in function and specificity	gene	gene1069	http://www.ncbi.nlm.nih.gov/gene/?term=azo1047
azo1048	azo1048	trpA	trpA	1127891	1128706	+	TrpA protein	Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan: L-serine + 1-(indol-3-yl)glycerol 3-phosphate %3D L-tryptophan + glyceraldehyde 3-phosphate + H2O. Alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Similar to trembl|Q8XXY2 (68%25) and to sprot|TRPA_PSEPU (42%25). Pfam (PF00290): Tryptophan synthase alpha chain TIGRfam (TIGR00262): Tryptophan synthase alpha chain InterPro (PS50264): Proteins binding FMN and related compounds core region%3B~High confidence in function and specificity	gene	gene1070	http://www.ncbi.nlm.nih.gov/gene/?term=azo1048
azo1049	azo1049	accD	accD	1128703	1129575	+	probable acetyl-coenzyme A carboxylase carboxyl transferase subunit b	Function:-THIS PROTEIN IS A COMPONENT OF THE ACETYL COENZYME A CARBOXYLASE COMPLEX%3B FIRST BIOTIN CARBOXYLASE CATALYZES THE CARBOXYLATION OF THE CARRIER PROTEIN AND THEN THE TRANSCARBOXYLASE TRANSFERS THE CARBOXYL GROUP TO FORM MALONYL-COA (BY SIMILARITY). Entry name :-SWISSPROT:ACCD_ECOLI Prim. accession # P08193 Identities %3D 178/287 (62%25) InterPro:- IPR000438%3B ACoACC_transB. IPR000022%3B Carboxyl_trans. Pfam:- PF01039%3B Carboxyl_trans%3B 1. Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene1071	http://www.ncbi.nlm.nih.gov/gene/?term=azo1049
azo1050	azo1050	folC	folC	1129592	1130890	+	dihydrofolate synthase / Tetrahydrofolylpolyglutamate synthase	FolC bifunctional protein [Includes: Folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS)%3B Dihydrofolate synthase (EC 6.3.2.12)]. Conversion of folates to polyglutamate derivatives.%3B~High confidence in function and specificity	gene	gene1072	http://www.ncbi.nlm.nih.gov/gene/?term=azo1050
azo1051	azo1051		azo1051	1130902	1131543	+	conserved hypothetical membrane protein	Conserved hypothetical membrane proteine. Homology to BB2598 of Bordetella bronchiseptica of 37%25 (trembl|Q7WJA1(SRS)). Has 2 copies of PF05036%2C Sporulation related repeat%3BIPR007730%2C SPOR%3B This 35 residue repeat is found in proteins involved in sporulation and cell division such as FtsN%2C DedD%2C and CwlM. This repeat might be involved in binding peptidoglycan (Bateman A pers obs). FtsN is an essential cell division protein with a simple bitopic topology%2C a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localises to the septum ring complex. The CwlM gene is a cell wall hydrolase so this repeat may help localise the protein to the cell wall. no signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene1073	http://www.ncbi.nlm.nih.gov/gene/?term=azo1051
azo1052	azo1052	cvpA	cvpA	1131554	1132045	+	putative colicin V production protein	Colicin V production protein (dedE protein) (Pur regulon 18 kDa protein). REQUIRED FOR COLICIN V PRODUCTION FROM PLASMID INCFI COLV3-K30. TREMBL:Q82WH7: 29%25 identity%2C38%25 similarity InterPro:IPR003825%3B Colicin_V. Pfam:PF02674%3B Colicin_V TIGR00304: conserved hypothetical protei Signal peptide present (Signal P predicted) TMH's 4 (TMHMM predicted)%3B~High confidence in function and specificity	gene	gene1074	http://www.ncbi.nlm.nih.gov/gene/?term=azo1052
azo1053	azo1053	purF	purF	1132057	1133586	+	amidophosphoribosyltransferase	amidophosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (Q51342)%3B~High confidence in function and specificity	gene	gene1075	http://www.ncbi.nlm.nih.gov/gene/?term=azo1053
azo1054	azo1054	metZ	metZ	1133594	1134763	+	Cys/Met metabolism pyridoxal-phosphate-dependent enzyme	A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine%2C homocysteine and methionine have been shown to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes. Similar to trembl|Q82WH6 (72%25) and to sprot|CGL_MOUSE (36%25). Pfam (PF01053): Cys/Met metabolism pyridoxal-phosphate-dependent enzymes%3B~Family membership	gene	gene1076	http://www.ncbi.nlm.nih.gov/gene/?term=azo1054
azo1055	azo1055	lpxH	lpxH	1134854	1135654	-	putative UDP-2%2C3-diacylglucosamine hydrolase	UDP-2%2C3-diacylglucosamine hydrolase [lpxH]%2C 54%25 identity to TrEMBL%3BQ5P1I2 Has Pfam%3BPF00149%2CCalcineurin-like phosphoesterase%3B This family includes a diverse range of phosphoesterases%2C including protein phosphoserine phosphatases%2C nucleotidases%2C sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD P13457 or yeast MRE11 P32829. The most conserved regions in this superfamily centre around the metal chelating residues. InterPro%3BIPR004843%2C M-pesterase.	gene	gene1077	http://www.ncbi.nlm.nih.gov/gene/?term=azo1055
azo1056	azo1056	ppiB	ppiB	1135647	1136141	-	peptidyl-prolyl cis-trans isomerase B	Peptidyl-prolyl cis-trans isomerase B. Homology to ppiB of E.coli of 71%25 (sprot|PPIB_ECOLI). PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: Cyclophilin-type peptidyl-prolyl cis-trans isomerase(IPR002130) Pfam: Cyclophilin-type peptidyl-prolyl cis-trans isomerase no signal peptide no TMH%3B~High confidence in function and specificity	gene	gene1078	http://www.ncbi.nlm.nih.gov/gene/?term=azo1056
azo1057	azo1057	ppiA	ppiA	1136158	1136739	-	probable peptidyl-prolyl cis-trans isomerase A	Probable peptidyl-prolyl cis-trans isomerase. Homology to ppiA of E. coli of 56%25 (SWISSPROT:PPIA_ECOLI) PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR002130) Pfam: Cyclophilin-type peptidyl-prolyl cis-trans isomerase Signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1079	http://www.ncbi.nlm.nih.gov/gene/?term=azo1057
azo1058	azo1058		azo1058	1136784	1137980	-	conserved hypothetical secreted protein	Conserved hypothetical secreted proteins. Homology to of Dechloromonas aromatica of 56%25 (gi|41723709|ref|ZP_00150619.1|(NBCI ENTREZ)). Signal Peptide Present. No TMH present. Has PF03734:(IPR005490)ErfK/YbiS/YcfS/YnhG%3BThis family of proteins are found in a range of bacteria. The conserved region contains a conserved histidine and cysteine%2Csuggesting that these proteins have an enzymatic activity. Several members of this family contain peptidoglycan binding domains. So these proteins may use peptidoglycan or a precursor as a substrate.%3B~Conserved hypothetical protein	gene	gene1080	http://www.ncbi.nlm.nih.gov/gene/?term=azo1058
azo1059	azo1059		azo1059	1137983	1139239	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03002816 of Dechloromonas aromatica of 42%25 (gi|53730051|ref|ZP_00348646.1|(NBCI ENTREZ)). domain structure: 59 aa - 92 aa TRP%3B 93 aa- 126 aa TRP%3B 127 aa -155 aa TRP. InterPro: TPR repeat (IPR001440)%3B Type I antifreeze protein (IPR000104). Pfam: TRP Domain. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene1081	http://www.ncbi.nlm.nih.gov/gene/?term=azo1059
azo1060	azo1060	cysS	cysS	1139410	1140792	+	CysS protein	Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA ligase) (CysRS). InterPro: Cysteinyl-tRNA synthetase cysS: cysteinyl-tRNA synthetase%3B~High confidence in function and specificity	gene	gene1082	http://www.ncbi.nlm.nih.gov/gene/?term=azo1060
azo1061	azo1061		azo1061	1140857	1142011	-	extracellular ligand binding protein	This family includes extracellular ligand binding domains of a wide range of receptors and it also includes the bacterial amino acid binding proteins of known structure. Similar to trembl|Q8XQ39 (40%25) and to trembl|Q89G00 (32%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Family membership	gene	gene1083	http://www.ncbi.nlm.nih.gov/gene/?term=azo1061
azo1062	azo1062	dnaJ1	dnaJ1	1142201	1143328	-	chaperone protein DnaJ	Chaperone protein dnaJ (Heat shock protein J) (HSP40). Homology to dnaJ of E. coli of 61%25 (sprot|DNAJ_ECOLI) Acts as a co-chaperone. Stimulates jointly with grpE the ATPase activity of dnaK (By similarity). Pfam: DnaJ domain%3B DnaJ central domain (4 repeats)%3B DnaJ terminal region no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1084	http://www.ncbi.nlm.nih.gov/gene/?term=azo1062
azo1063	azo1063	dnaK	dnaK	1143424	1145349	-	chaperone protein DnaK	Chaperone protein dnaK. Homology to dnaK of E. coli of 74%25 (sprot|DNAK_ECOLI). Acts as a chaperone (By similarity). InterPro: Heat shock protein hsp70 (IPR001023) Hsp70 protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1085	http://www.ncbi.nlm.nih.gov/gene/?term=azo1063
azo1064	azo1064	grpE	grpE	1145464	1146030	-	probable heat shock protein GrpE	Probable heat shock protein GrpE. Homology to grpE of L. pneumophila of 42%25 (sprot|GRPE_LEGPN) Stimulates jointly with dnaJ the ATPAse activity of dnaK. Helps to release ADP from dnaK thus allowing dnaK to recycle more efficiently (By similarity). Pfam: GrpE no signal peptide no TMHs%3B~Family membership	gene	gene1086	http://www.ncbi.nlm.nih.gov/gene/?term=azo1064
azo1065	azo1065		azo1065	1146167	1146412	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of Polaromonas sp. JS666 of 43%25 ( ZP_00361754). No domains predicted. No singal peptide. No TMHs	gene	gene1087	http://www.ncbi.nlm.nih.gov/gene/?term=azo1065
azo1066	azo1066	gyrA	gyrA	1146520	1149153	+	DNA topoisomerase (ATP-hydrolysing)	DNA gyrase subunit A (EC 5.99.1.3). DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings including catenanes and knotted rings. recN: DNA repair protein RecN%3B~High confidence in function and specificity	gene	gene1088	http://www.ncbi.nlm.nih.gov/gene/?term=azo1066
azo1067	azo1067	serC	serC	1149150	1150247	+	phosphoserine transaminase.	Phosphoserine transaminase. catalytic activity: o-phospho-l-serine + 2-oxoglutarate %3D 3-phosphonooxypyruvate + l-glutamate (by similarity). cofactor: pyridoxal phosphate (by similarity). pathway: required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine (by similarity). similarity: belongs to the class-v pyridoxal-phosphate-dependent aminotransferase family. InterPro: Aminotransferase class-V%3B~High confidence in function and specificity	gene	gene1089	http://www.ncbi.nlm.nih.gov/gene/?term=azo1067
azo1068	azo1068	pheA	pheA	1150262	1151326	+	chorismate mutase/prephenate dehydratase	Bifunctional chorismate mutase/prephenate dehydratase P-protein%2C pheA%2C%3B~High confidence in function and specificity	gene	gene1090	http://www.ncbi.nlm.nih.gov/gene/?term=azo1068
azo1069	azo1069	hisC1	hisC1	1151344	1152441	+	histidinol-phosphate aminotransferase	Histidinol-phosphate aminotransferase 2%2C%3B~High confidence in function and specificity	gene	gene1091	http://www.ncbi.nlm.nih.gov/gene/?term=azo1069
azo1070	azo1070	tyrA	tyrA	1152457	1153347	+	probable prephenate dehydrogenase	Prephenate dehydrogenases are involved in tyrosine biosynthesis. Similar to trembl|Q7NSL5 (54%25) and to trembl|Q82XD9 (47%25). Pfam: PDH%2C Prephenate dehydrogenase. TMHMM reporting one Tmhelix. SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene1092	http://www.ncbi.nlm.nih.gov/gene/?term=azo1070
azo1071	azo1071	aroA	aroA	1153344	1155305	+	3-phosphoshikimate 1-carboxyvinyltransferase	EPSP synthase catalyzes the sixth step in the biosynthesis from chorismate of the aromatic amino acids (the shikimate pathway) in bacteria. Similar to sprot|AROA_RALSO (46%25) and to trembl|Q7NTK6 (47%25). TIGRfam: (TIGR00017): Cytidylate kinase Pfam (PF02224): Cytidylate kinase Pfam (PF00275): EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)%3B~Specificity unclear	gene	gene1093	http://www.ncbi.nlm.nih.gov/gene/?term=azo1071
azo1072	azo1072	rpsA	rpsA	1155409	1157115	+	30S ribosomal protein S1	30S ribosomal protein S1. BINDS MRNA%3B THUS FACILITATING RECOGNITION OF THE INITIATION POINT. IT IS NEEDED TO TRANSLATE MRNA WITH A SHORT SHINE-DALGARNO (SD) PURINE-RICH SEQUENCE.%3B~High confidence in function and specificity	gene	gene1094	http://www.ncbi.nlm.nih.gov/gene/?term=azo1072
azo1073	azo1073	ihfB	ihfB	1157126	1157410	+	probable integration host factor%2C beta-subunit	Probable integration host factor%2C beta-subunit (IHF-beta). Homology to ihfB of P. aeruginosa of 64%25 (sprot|IHFB_PSEAE(SRS)) Bacteria synthesize a set of small%2C usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins. The exact function os these proteins is not yet clear but they are capable of wrapping DNA and stabilizing it from denaturation under extreme environmental conditions. Theprotein exists as a dimer and two beta-arms function as the non-specific binding site for bacterial DNA. InterPro: Bacterial histone-like DNA-binding protein (IPR000119) Pfam: Pacterial DNA-binding protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1095	http://www.ncbi.nlm.nih.gov/gene/?term=azo1073
azo1074	azo1074		azo1074	1157501	1157806	+	conserved hypothetical membrane protein	38%25 identity with Hypothetical protein from Chromobacterium violaceum TrEMBL:Q7NTL0%2CGenename CV3044 Signal Peptide present TMHMM reporting for transmembrane helices:2 present.%3B~Conserved hypothetical protein	gene	gene1096	http://www.ncbi.nlm.nih.gov/gene/?term=azo1074
azo1075	azo1075		azo1075	1157814	1158989	+	conserved hypothetical transferase protein	Putative N-acetylglucosaminyl transferase. Enzyme that is involved in the catalysis of the reaction: UDP-N-acetyl-D-glucosamine + N-acetyl-D-glucosaminyl-diphosphodolichol %3D UDP + N%2CN''-diacetylchitobiosyldiphosphodolichol. 36%25 Cas_TM1810_C.IPR001574%3B RIP.IPR001440%3B TPR.IPR008941%3B TPR-like.InterPro: TPR repeat TIGRFAMs:TIGR01870%3B cas_TM1810%3B 1. TMHx:1%3B~Specificity unclear	gene	gene1097	http://www.ncbi.nlm.nih.gov/gene/?term=azo1075
azo1076	azo1076	ugd	ugd	1159107	1160429	+	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).%3B~High confidence in function and specificity	gene	gene1098	http://www.ncbi.nlm.nih.gov/gene/?term=azo1076
azo1077	azo1077	cysM	cysM	1160583	1161473	+	cysteine synthase B	Cysteine synthase chloroplast precursor%2C%3B~High confidence in function and specificity	gene	gene1099	http://www.ncbi.nlm.nih.gov/gene/?term=azo1077
azo1078	azo1078		azo1078	1161512	1162306	+	conserved hypothetical protein	Probable DNA polymerase epsilon catalytic subunit A (EC 2.7.7.7) (DNA polymerase II subunit A). TIGR00099: conserved hypothetical protein.%3B~Function unclear	gene	gene1100	http://www.ncbi.nlm.nih.gov/gene/?term=azo1078
azo1079	azo1079		azo1079	1162660	1164576	+	ThrS protein	Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS).%3B~High confidence in function and specificity	gene	gene1102	http://www.ncbi.nlm.nih.gov/gene/?term=azo1079
azo1080	azo1080	infC	infC	1164657	1165127	+	translation initiation factor IF-3	Translation initiation factor IF-3. IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.%3B~High confidence in function and specificity	gene	gene1103	http://www.ncbi.nlm.nih.gov/gene/?term=azo1080
azo1081	azo1081	rpmI	rpmI	1165275	1165472	+	50S ribosomal protein L35	50S ribosomal protein L35.%3B~Family membership	gene	gene1104	http://www.ncbi.nlm.nih.gov/gene/?term=azo1081
azo1082	azo1082	rplT	rplT	1165485	1165844	+	50S ribosomal protein L20	50S ribosomal protein L20. This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit%3B~High confidence in function and specificity	gene	gene1105	http://www.ncbi.nlm.nih.gov/gene/?term=azo1082
azo1083	azo1083	pheS	pheS	1165911	1166942	+	phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS). InterPro: Phenylalanyl-tRNA synthetase alpha subunit pheS: phenylalanyl-tRNA synthetase a%3B~High confidence in function and specificity	gene	gene1106	http://www.ncbi.nlm.nih.gov/gene/?term=azo1083
azo1084	azo1084	pheT	pheT	1166949	1169339	+	phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS)%3B~High confidence in function and specificity	gene	gene1107	http://www.ncbi.nlm.nih.gov/gene/?term=azo1084
azo1085	azo1085	ihfA	ihfA	1169336	1169647	+	integration host factor alpha-subunit	Integration host factor alpha-subunit (IHF-alpha). This protein is one of the two subunits of integration host factor a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (By similarity). InterPro: Bacterial histone-like DNA-binding protein.%3B~High confidence in function and specificity	gene	gene1108	http://www.ncbi.nlm.nih.gov/gene/?term=azo1085
azo1086	azo1086		azo1086	1169628	1170008	+	putative MerR-family transcriptional regulator	Putative MerR-family transcriptional regulator%2Csimilar toTREMBL: trembl|Q83C17 (51%25 Coxiella burnetii%2Ccbu1319) Pfam: PF00376 MerR family regulatory protein. HTH reporting nucleic acid binding motif.	gene	gene1109	http://www.ncbi.nlm.nih.gov/gene/?term=azo1086
azo1087	azo1087	surE	surE	1170324	1171067	+	phosphoric-monoester phosphohydrolase	Acid phosphatase surE (EC 3.1.3.2). sprot|SURE_NITEU (Q82VV9) Acid phosphatase surE -70%25 identity%2C 80%25 similarity. Interpro:Members of this family are acid phosphatases%2C EC: 3.1.3.2 [1]. In bacteria they may be involved in the stress response [2]. Escherichia coli cells with the surE gene disrupted are found to survive poorly in stationary phase surE: stationary-phase survival protein S TIGRFAM: taut (tautomerase)%2C MIP (family of channel proteins)%2C CynX (Cyanate transport system proteins) TMHMM predicted transmembrane helices%3B~High confidence in function and specificity	gene	gene1111	http://www.ncbi.nlm.nih.gov/gene/?term=azo1087
azo1088	azo1088	pcm2	pcm2	1171112	1171717	+	protein-L-isoaspartate (D-aspartate) O-methyltransferase	Protein-L-isoaspartate O-methyltransferase%2C 56%25 Identity to TrEMBL%3BQ7VXN1.51%25 Identity to TrEMBL%3BQ82VW0%2CQ7NRV0. SProt%3BQ886L4(52%25 Idnetity)%2C Q87LQ6(51%25)%2CP24206(47%25) Has PF01135%2C Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)%3BIPR000682%2C PCMT%3B Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MEDLINE: (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins%3B the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues.	gene	gene1112	http://www.ncbi.nlm.nih.gov/gene/?term=azo1088
azo1089	azo1089	nlpD	nlpD	1171714	1172622	+	conserved hypothetical lipoprotein	Conserved hypothetical lipoprotein. Homology to nlpD of R. gelatinosus of 43%25 (trembl|Q9JP90) InterPro: Peptidase family M23/M37 (IPR002886)%3B LysM motif (IPR002482) Pfam: LysM domain%3B Peptidase family m23/M27 signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1113	http://www.ncbi.nlm.nih.gov/gene/?term=azo1089
azo1090	azo1090	rpoS	rpoS	1172633	1173568	+	putative RNA polymerase sigma factor	RNA polymerase sigma factor RpoS Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in acid resistance. Belongs to the sigma-70 factor family 50%25 1. PF04542 Sigma70_r2%3B 1. helixturnhelix HTH: reporting nucleic acid binding motif%3B~High confidence in function and specificity	gene	gene1114	http://www.ncbi.nlm.nih.gov/gene/?term=azo1090
azo1091	azo1091	mltB	mltB	1173565	1174575	-	putative membrane-bound lytic murein transglycosylase	Putative membrane-bound lytic murein transglycosylase. homology to mltb of E. coli of 38%25 (sprot|MLTB_ECOLI) Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division. no domains prediced signal peptide no TMHs%3B~Family membership	gene	gene1115	http://www.ncbi.nlm.nih.gov/gene/?term=azo1091
azo1092	azo1092		azo1092	1174572	1176551	-	conserved hypothetical membrane protein	Conserved hypotetical membrane protein. Homology to RSp0111 of R. solanacearum of 41%25 (trembl|Q8XTJ7(SRS)) Pfam: Transglutaminase-like superfamily signal peptide probable 4 TMHs%3B~Conserved hypothetical protein	gene	gene1116	http://www.ncbi.nlm.nih.gov/gene/?term=azo1092
azo1093	azo1093		azo1093	1176544	1177527	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS03012 of Ralstonia solanacearum of 40%25 (trembl|Q8XTJ8) InterPro: Protein of unknown function DUF58 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor%2C type A domain InterterPro: IPR002881%3B DUF58. Pfam: PF01882%3B DUF58%3B Non-secretory with low signal peptide probability (Signal P predicted). TMHMM predicted 2 transmembrane helices.%3B~Conserved hypothetical protein	gene	gene1117	http://www.ncbi.nlm.nih.gov/gene/?term=azo1093
azo1094	azo1094	moxR1	moxR1	1177527	1178444	-	MoxR protein	MoxR protein (MxaR protein). MAY BE INVOLVED IN THE REGULATION OF FORMATION OF ACTIVE METHANOL DEHYDROGENASE. TREMBL:Q883V0: 60%25 identity%2C 73%25 similarity SMART: SM00382%3B AAA InterPro: IPR003593%3B AAA_ATPase. IPR001270%3B Chaprnin_clpA/B. IPR003442%3B UPF0079. Pfam: PF02367%3B UPF0079%3B Pfam: Mg_chelatase:Magnesium chelatase%2C subunit ChlI ruvB: Holliday junction DNA helicase Ru No signal peptide and transmembrane helices%3B~High confidence in function and specificity	gene	gene1118	http://www.ncbi.nlm.nih.gov/gene/?term=azo1094
azo1095	azo1095		azo1095	1178599	1179525	+	histone deacetylase family protein	Histone deacetylases%2C acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of an ancient protein superfamily%2C TREMBL:Q7VZF1 (58%25 identity)%3B TREMBL:Q7NRU4 (57%25 identity). InterPro (IPR000286): Histone deacetylase family Pfam (PF00850): Histone deacetylase domain.%3B~Family membership	gene	gene1119	http://www.ncbi.nlm.nih.gov/gene/?term=azo1095
azo1096	azo1096	dapA	dapA	1179632	1180510	+	dihydrodipicolinate synthase	Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway. It catalyzes the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue. Similar to trembl|Q82SD7 (63%25) and to sprot|DAPA_ECOLI (51%25). Pfam (PF00701): Dihydrodipicolinate synthetase family%3B~High confidence in function and specificity	gene	gene1120	http://www.ncbi.nlm.nih.gov/gene/?term=azo1096
azo1097	azo1097	nlpB	nlpB	1180537	1181676	+	putative lipoprotein	Putative lipoprotein. Homology to nlpB of E. coli of 20%25 (sprot|NLPB_ECOLI) This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential. Pfam: NlpB/DapX lipoprotein singal peptide no TMHs%3B~Family membership	gene	gene1121	http://www.ncbi.nlm.nih.gov/gene/?term=azo1097
azo1098	azo1098		azo1098	1181789	1182073	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to NMB1523 of N.meningitidis of 50%25 (tremble:Q9JYL7) No domains predicted. No TMHs Signal Peptide present.%3B~Conserved hypothetical protein	gene	gene1122	http://www.ncbi.nlm.nih.gov/gene/?term=azo1098
azo1099	azo1099		azo1099	1182332	1183447	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3581 of C.violaceum of 48%25 (tremble:Q7NS46) SM00558%3BJmjC:Probable enzymes%2C but of unknown functions%2Cthat regulate chromatin reorganisation processes. No signal peptide or TMH present. lytR_cpsA_psr: cell envelope-related fu	gene	gene1123	http://www.ncbi.nlm.nih.gov/gene/?term=azo1099
azo1100	azo1100		azo1100	1183539	1184840	+	putative 23S rRNA (Uracil-5-) methyltransferase	Putative 23S rRNA (Uracil-5-)-methyltransferase rumA (EC 2.1.1.-) (23S rRNA(M-5-U1939)-methyltransferase). Homology to ruma of E. coli of 39%25 (sprot|RUMA_ECOLI(SRS)) Catalyzes the formation of 5-methyl-uridine at position 1939 (M-5-U1939) in 23S rRNA. Tigrfam: ygcA: RNA methyltransferase%2C TrmA family Pfam: TRAM domain no signal peptide no TMHs%3B~Family membership	gene	gene1124	http://www.ncbi.nlm.nih.gov/gene/?term=azo1100
azo1101	azo1101		azo1101	1185090	1185695	+	pseudouridylate synthase	Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-2457 in 23S ribosomal RNA%3B~Family membership	gene	gene1126	http://www.ncbi.nlm.nih.gov/gene/?term=azo1101
azo1102	azo1102		azo1102	1185730	1186185	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc2494 of R. solanacearum of 48%25 (trembl|Q8XWI0(SRS)). Pfam: DUF192 signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1127	http://www.ncbi.nlm.nih.gov/gene/?term=azo1102
azo1103	azo1103	flhB	flhB	1186321	1187466	+	flagellar biosynthetic protein FlhB	Flagellar biosynthetic protein flhB. Required for formation of the rod structure in the basal body of the flagellar apparatus.The FlhB and FlhA together with FliI and FliH%2C may constitute the export apparatus of flagellin. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments%2C suggesting that it may be an integral membrane protein. InterPro: FlhB HrpN YscU SpaS Family flhB: flagellar biosynthetic protein Pfam: FlhB HrpN YscU SpaS Family 4 TMHs no signal peptide%3B~High confidence in function and specificity	gene	gene1128	http://www.ncbi.nlm.nih.gov/gene/?term=azo1103
azo1104	azo1104	flhA	flhA	1187481	1189580	+	flagellar biosynthesis protein flhA	Flagellar biosynthesis protein flhA. Required for formation of the rod structure of the flagellar apparatus. Together with FlhB%2C FliI and FliH may constitute the export apparatus of flagellin. Pfam: FHIPEP no signal peptide probable 7 TMHs%3B~High confidence in function and specificity	gene	gene1129	http://www.ncbi.nlm.nih.gov/gene/?term=azo1104
azo1105	azo1105	flhF	flhF	1189724	1191256	+	putative flagellar biosynthesis protein FlhF	Putative flagellar biosynthesis protein flhF (Flagella associated GTP-binding protein). Necessary for flagellar priosinthesis. May be involved in translocation of the flagellum (by similarity). Belongs to the family of of subunits of the signal recognition particale in bacteria like FtsY%2C the pilA protein and the flagellar biosynthesis protein flhF. InterPro: AAA ATPase superfamily%2C GTP-binding signal recognition particell (SRP54) G-domain no signal peptide no TMHs%3B~Family membership	gene	gene1130	http://www.ncbi.nlm.nih.gov/gene/?term=azo1105
azo1106	azo1106	fleN	fleN	1191259	1192041	+	hypothetical flagellar related protein FleN	Hypothetical flagellar related protein FleN. Homology to fleN of Pseudomonas fluorescens of 27%25 (AAN03366). No domains predicted. No signal peptide. No TMHs	gene	gene1131	http://www.ncbi.nlm.nih.gov/gene/?term=azo1106
azo1107	azo1107	fliA	fliA	1192166	1192936	+	RNA polymerase sigma factor	RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28). THE SIGMA FACTOR IS AN INITIATION FACTOR THAT PROMOTES ATTACHMENT OF THE RNA POLYMERASE TO SPECIFIC INITIATION SITES AND THEN IS RELEASED. THIS ALTERNATIVE SIGMA FACTOR IS SPECIFIC FOR CLASS 3 FLAGELLAR OPERONS. Similar to SWISSPROT: sprot|FLIA_PSEAE (46%25 Pseudomonas aeruginosa%2C RNA polymerase sigma factor for flagellar operon (sigma-f factor) (sigma-28)). InterPro: IPR000943 Sigma_70. Pfam: PF00140 Sigma-70 factor%2C region 1.2. HTH reporting nucleic acid binding motif. gatB_rel: aspartyl-tRNA(Asn) amidotrans%3B~High confidence in function and specificity	gene	gene1132	http://www.ncbi.nlm.nih.gov/gene/?term=azo1107
azo1108	azo1108		azo1108	1193004	1193744	+	flagellar motor protein MotA	Flagellar motor protein MotA (Chemotaxis motA protein). Required for rotation of the flagellar motor. Probable transmembrane proton channel (By similarity). Pfam: MotA/TolQ//ExbB proton channel family signal peptide probable 4 TMHs%3B~High confidence in function and specificity	gene	gene1133	http://www.ncbi.nlm.nih.gov/gene/?term=azo1108
azo1109	azo1109	tar	tar	1193801	1195465	-	putative aspartate chemoreceptor protein	E. coli uses five MCP-family receptors to promote chemotactic movements toward different attractant compounds: Tar is the aspartate and maltose chemoreceptor. Methyl-accepting chemotaxis protein%2C%3B~Specificity unclear	gene	gene1134	http://www.ncbi.nlm.nih.gov/gene/?term=azo1109
azo1110	azo1110	motB1	motB1	1195645	1196484	+	flagellar motor protein MotB	Flagellar motor protein MotB (Chemotaxis motB protein. Required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall. Pfam: OmpA family no signal peptide probable 1 TMH%3B~High confidence in function and specificity	gene	gene1135	http://www.ncbi.nlm.nih.gov/gene/?term=azo1110
azo1111	azo1111	dcrH2	dcrH2	1196592	1197074	+	putative hemerythrin-like protein	DcrH:hemerythrin protein%2C is transmembrane methyl-accepting protein probably involved in bacterial chemotaxis . 31%25 Hemerythrin. Pfam:PF01814%3B Hemerythrin%3B 1.%3B~High confidence in function and specificity	gene	gene1136	http://www.ncbi.nlm.nih.gov/gene/?term=azo1111
azo1112	azo1112		azo1112	1197195	1199600	-	DNA topoisomerase IV subunit A	Region start changed from 1199745 to 1199601 (-144 bases)	gene	gene1137	http://www.ncbi.nlm.nih.gov/gene/?term=azo1112
azo1113	azo1113		azo1113	1199800	1200315	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Bucepa03000705 of Burkholderia cepacia of 33%25 (gi|46323973|ref|ZP_00224335.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene1138	http://www.ncbi.nlm.nih.gov/gene/?term=azo1113
azo1114	azo1114	lhpp	lhpp	1200393	1201181	-	putative inorganic pyrophosphate phosphatase	Phospholysine phosphohistidine inorganic pyrophosphate phosphatase. Enzyme that hydrolyzes not only oxygen-phosphorus bonds in inorganic pyrophosphate but also nitrogen-phosphorus bonds in phospholysine%2Cphosphohistidine and imidodiphosphate in vitro. 38%25 HAD_SF_IIA.IPR006355%3B HAD_SF_IIA_hyp2.IPR005834%3B Hydrolase. Pfam:PF00702%3BHydrolase%3B 1. TIGRFAMs:TIGR01460%3B HAD-SF-IIA%3B 1.TIGR01458%3B HAD-SF-IIA-hyp3%3B 1. TMHelix:1%3B~High confidence in function and specificity	gene	gene1139	http://www.ncbi.nlm.nih.gov/gene/?term=azo1114
azo1115	azo1115	parE	parE	1201275	1203248	-	topoisomerase IV subunit B	Topoisomerase IV subunit B (EC 5.99.1.-). TOPOISOMERASE IV IS ESSENTIAL FOR CHROMOSOME SEGREGATION. IT HAS RELAXATION OF SUPERCOILED DNA ACTIVITY. PERFORMS THE DECATENATION EVENTS REQUIRED DURING THE REPLICATION OF A CIRCULAR DNA MOLECULE. InterPro: DNA topoisomerase II%3B~High confidence in function and specificity	gene	gene1140	http://www.ncbi.nlm.nih.gov/gene/?term=azo1115
azo1116	azo1116		azo1116	1203341	1203955	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2CTrEMBL%3BQ8NSJ9(49%25 identity%2C73%25 similarity)%2CTrEMBL%3BQ7VSN7(53%25 identity%2C 72%25 similarity). Has 2 PF03458(IPR005115 ):UPF0126 domain%3BDomain always found as pair in bacterial membrane proteins of unknown function. This domain contains three transmembrane helices. The conserved glycines are suggestive of an ion channel (C. Yeats unpublished obs.). signal peptide 6 TMHs%3B~Conserved hypothetical protein	gene	gene1141	http://www.ncbi.nlm.nih.gov/gene/?term=azo1116
azo1117	azo1117	aceA	aceA	1204519	1205832	-	AceA protein	Isocitrate lyase. Homology to aceA of E. coli of 73%25 (sprot|ACEA_ECOLI). Isocitrate lyase is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass%2C an alternative to the tricarboxylic acid cycle in bacteria%2C fungi and plants. InterPro: Isocitrate lyase (IPR000918) Pfam: Isocitrate lyase family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1142	http://www.ncbi.nlm.nih.gov/gene/?term=azo1117
azo1118	azo1118		azo1118	1206325	1207365	+	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene1143	http://www.ncbi.nlm.nih.gov/gene/?term=azo1118
azo1119	azo1119	crtI	crtI	1207554	1209134	+	phytoene dehydrogenase	Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene desaturase). Phytoene dehydrogenase (phytoene desaturase) is an enzyme of carotenoid biosynthesis that converts phytoene into zeta-carotene via the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene%2C TREMBL:Q8XYC4 (50%25 identity)%3B SWISSPROT:P06108 (26%25 identity). InterPro (IPR008150): Bacterial-type phytoene dehydrogenase Pfam (Phytoene_dh): Phytoene dehydrogenase related enzyme.%3B~High confidence in function and specificity	gene	gene1144	http://www.ncbi.nlm.nih.gov/gene/?term=azo1119
azo1120	azo1120		azo1120	1209318	1210130	-	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8XYC0 (36%25 identity)%3B TREMBL:Q9EX74 (34%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene1145	http://www.ncbi.nlm.nih.gov/gene/?term=azo1120
azo1121	azo1121		azo1121	1210127	1210732	-	isochorismatase family protein	This is a family of hydrolase enzymes. Isochorismatase%2C also known as 2%2C3 dihydro-2%2C3 dihydroxybenzoatesynthase catalyses the conversion of isochorismate%2C in the presence of water%2C to 2%2C3-dihydroxybenzoate and pyruvate%2C TREMBL:Q9HZE2 (34%25 identity)%3B TREMBL:Q8XSM9 (39%25 identity). Pfam (PF00857): Isochorismatase family.%3B~Family membership	gene	gene1146	http://www.ncbi.nlm.nih.gov/gene/?term=azo1121
azo1122	azo1122	carBa1	carBa1	1210885	1211421	-	putative dioxygenase%2C hydroxylase small component.	Ring hydroxylating dioxygenases are multicomponent 1%2C2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols. The beta subunit is may be responsible for the substrate specificity of the enzyme. Putative 2'-aminobiphenyl-2%2C3-diol 1%2C2-dioxygenase%2C CarBa. Involved in the aerobic degradation of carbazole by P.resinovorans sp. strain CA10. XlyY: Benzene 12-dioxygenase beta subunit (EC 1.14.12.3)%2C involved in benzoate degradation.Degradation of benzoate to 2-hydro-12-dihydroxybenzoate (dhb).%3B~Conserved hypothetical protein	gene	gene1147	http://www.ncbi.nlm.nih.gov/gene/?term=azo1122
azo1123	azo1123	carBb1	carBb1	1211408	1212763	-	putative dioxygenase hydroxylase large component	Ring hydroxylating dioxygenases are multicomponent 1%2C2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols. Hydroxylase large component of 1%2C2-dioxygenase protein complex%2C involved in aromatic compounds degradation. 81%25 simialr to a Putative 2'-aminobiphenyl-2%2C3-diol 1%2C2-dioxygenase%2C CarBb. Involved in the aerobic degradation of carbazole by Pseudomonas resinovorans sp. strain CA10. TREMBL:Q8GI28 InterPro:IPR005806%3B Rieske_reg.IPR001663%3B Ring_hydroxyl_A. Pfam:PF00355%3B Rieske%3B 1. PF00848%3B Ring_hydroxyl_A%3B 1.%3B~High confidence in function and specificity	gene	gene1148	http://www.ncbi.nlm.nih.gov/gene/?term=azo1123
azo1124	azo1124	vanB1	vanB1	1212783	1213730	-	probable vanillate O-demethylase oxidoreductase	Probable vanillate O-demethylase oxidoreductase (Vanillate degradation ferredoxin-like protein). Homology to vanB of P. sp HR199 of 40%25 (sprot|VANB_PSEUH). The vanillate demethylase (EC:1.14.13.82) consists of two proteins: an oxygenase and an oxygenase reductase (VanA and VanB). This enzyme is involved in the vanillate degradation%2C a key intermediate in the degradation of lignin. InterPro: NADH:cytochrome b5 reductase (CBR)(IPR001834)%3B Ferredoxin (IPR001041)%3B Oxidoreductase FAD and NAD(P) binding domain (IPR001433) Pfam: Oxidoredutase FAD-binding domain%3B Oxidoreductase NAD-binding domain%3B 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~Family membership	gene	gene1149	http://www.ncbi.nlm.nih.gov/gene/?term=azo1124
azo1125	azo1125		azo1125	1214284	1215204	+	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q7W060 (64%25) and to sprot|LIVH_ECOLI (24%25). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting eight Tmhelix.%3B~Specificity unclear	gene	gene1150	http://www.ncbi.nlm.nih.gov/gene/?term=azo1125
azo1126	azo1126	livM2	livM2	1215207	1216199	+	putative branched-chain amino acid transport permease	Putative branched-chain amino acid transport permease Homology to livM of S. typhimurium of 28%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) Pfam: Branched-chain amino acid transport system signal peptide probable 9 TMHs%3B~Specificity unclear	gene	gene1151	http://www.ncbi.nlm.nih.gov/gene/?term=azo1126
azo1127	azo1127		azo1127	1216196	1216945	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP binding domains are responsible for coupling the energy of ATP hydrolysis to conformational changes in the ransmembrane domains. Similar to trembl|Q7W058 (49%25) and to sprot|LIVG_ECOLI (39%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily%3B~Specificity unclear	gene	gene1152	http://www.ncbi.nlm.nih.gov/gene/?term=azo1127
azo1128	azo1128		azo1128	1216942	1217658	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7W057 (65%25) and to trembl|Q84HI4 (49%25). Smart (SM00382): ATPase superfamily Pfam (PF00005): ABC transporter ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear	gene	gene1153	http://www.ncbi.nlm.nih.gov/gene/?term=azo1128
azo1129	azo1129		azo1129	1217770	1218957	+	probable ABC transporter substrate binding protein	ABC transporter substrate binding proteins counts to the family of extracellular ligand binding proteins. It is a component of the high affinity amino acid transport system. Similar to trembl|Q83V39 (51%25) and to trembl|Q7WF58 (49%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Function unclear	gene	gene1154	http://www.ncbi.nlm.nih.gov/gene/?term=azo1129
azo1130	azo1130		azo1130	1219045	1219530	-	S-adenosylmethionine:2-demethylmenaquinone methyltransferase	Region start changed from 1219636 to 1219531 (-105 bases)	gene	gene1155	http://www.ncbi.nlm.nih.gov/gene/?term=azo1130
azo1131	azo1131		azo1131	1219713	1220327	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03001685 of Dechloromonas aromatica of 46%25 (gi|41725028|ref|ZP_00151838.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene1156	http://www.ncbi.nlm.nih.gov/gene/?term=azo1131
azo1132	azo1132	clpA	clpA	1220421	1222703	-	probable ATP-dependent Clp protease%2C ATP-binding subunit clpA	ATP-dependent Clp protease ATP-binding subunit clpA. Homology to clpA of E. coli of 63%25 (sprot|CLPA_ECOLI). ATP-dependent specificity component of the clpP protease. It directs the protease to specific substrates. The primary function of the clpA-clpP complex appears to be the degradation of unfolded or abnormal proteins. InterPro: AAA-protein (ATPases associated with various cellular activities)(IPR003959)%3B AAA ATPase superfamily (IPR003593)%3B Clp amino terminus (IPR004176)%3B chaperonins clpA/B (IPR001270)%3B Bacterial typeII secretion system protein E (IPR001482) Pfam: Clp amino ternimal domain%3B ATPase family associated with cellular activites no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1157	http://www.ncbi.nlm.nih.gov/gene/?term=azo1132
azo1133	azo1133	clpS	clpS	1222704	1223012	-	ClpS protein	ATP-dependent Clp protease adaptor protein clpS [clpS]%2C65%25 identity (82%25 similarity) to SwissProt%3BQ7NRW1%2C64%25 identity to SwissProt%3BQ8XWK9. Has PF02617%3BATP-dependent Clp protease adaptor protein ClpS(IPR003769)%3B In the bacterial cytosol%2C ATP-dependent protein degradation is performed by several different chaperone-protease pairs%2C including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates%2C both SsrA-tagged proteins and ClpA itself%2C is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity%2C potentially redirecting degradation by ClpAP toward aggregated proteins.%3B~High confidence in function and specificity	gene	gene1158	http://www.ncbi.nlm.nih.gov/gene/?term=azo1133
azo1134	azo1134	cspE	cspE	1223446	1223649	+	cold-shock protein	Cold-shock protein cspE%2C (When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade%2C a 4-5 hour lag phase occurs%2C after which growth is resumed at a reduced rate. During the lag phase%2Cthe expression of around 13 proteins%2C which contain specific DNA-binding regions%2C is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature.)%3B~High confidence in function and specificity	gene	gene1159	http://www.ncbi.nlm.nih.gov/gene/?term=azo1134
azo1135	azo1135	rpmG	rpmG	1223918	1224085	-	50S ribosomal subunit protein L33	50S ribosomal protein L33.%3B~Family membership	gene	gene1160	http://www.ncbi.nlm.nih.gov/gene/?term=azo1135
azo1136	azo1136	rpmB	rpmB	1224147	1224383	-	50S ribosomal protein L28	50S ribosomal protein L28.%3B~High confidence in function and specificity	gene	gene1161	http://www.ncbi.nlm.nih.gov/gene/?term=azo1136
azo1137	azo1137	radC1	radC1	1224488	1225165	-	DNA repair protein radC homolog	DNA repair protein radC homolog%2C 64%25 Idnentity to SwisProt%3BQ82UL9%2C(58%25) to Q8XWN0. TrEMBL%3BQ7NTH5(60%25 Identity) Signal Peptide Present Has PF04002%2C RadC%2C DNA repair protein%3BIPR001405: RadC plays a role in repair of DNA damage after UV and X-ray irradiation in prokaryotes. The E. coli radC gene encodes a RecG-like DNA recombination/repair function. RadC may function specifically in recombinational repair that is associated with the replication fork.	gene	gene1162	http://www.ncbi.nlm.nih.gov/gene/?term=azo1137
azo1138	azo1138	dfp	dfp	1225220	1226419	+	phosphopantothenoylcysteine decarboxylase / Phosphopantothenate--cysteine ligase	DNA/pantothenate metabolism flavoprotein homolog. includes: phosphopantothenoylcysteine decarboxylase (ppcdc) (coac)%3B phosphopantothenate-- cysteine ligase FLAVOPROTEIN AFFECTING SYNTHESIS OF DNA AND PANTOTHENATE METABOLISM (BY SIMILARITY).%3B~High confidence in function and specificity	gene	gene1163	http://www.ncbi.nlm.nih.gov/gene/?term=azo1138
azo1139	azo1139	dut	dut	1226436	1226885	+	dUTP diphosphatase	dUTP diphosphatase (Deoxyuridine-triphosphatase) (dUTPase)%3B~High confidence in function and specificity	gene	gene1164	http://www.ncbi.nlm.nih.gov/gene/?term=azo1139
azo1140	azo1140		azo1140	1226887	1227312	+	conserved hypothetical mutT family protein	Conserved hypothetical MutT family protein. Homology to AGR_C_3368 of Agrobacterium tumefaciens of 33%25 (tremble:Q7CYF2). Pfam: NUDIX domain MutT is a small bacterial protein (~~12-15Kd) involved in the GO system MEDLINE:1328155 responsible for removing an oxidatively damaged form of guanine (8-hydroxy- guanine or 7%2C8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with near equal efficiency%2C leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate%2C with the concomitant release of pyrophosphate. A short conserved N-terminal region of mutT (designated the MutT domain) is also found in a variety of other prokaryotic%2C viral and eukaryotic proteins. No signal peptide. No TMH%3B~Family membership	gene	gene1165	http://www.ncbi.nlm.nih.gov/gene/?term=azo1140
azo1141	azo1141	soxF	soxF	1227315	1228592	-	probable sulfide dehydrogenase%2C flavoprtein subunit	Probable sulfide dehydrogenase%2C falvoprotein subunit (Flavocytochrome C flavoprotein subunit). Homology to fccB of C. vinosum of 40%25 (sprot|DHSU_CHRVI). Pfam: Pyridine nucleotide-disulphide oxidoreductase signal peptide no TMHs%3B~Family membership	gene	gene1166	http://www.ncbi.nlm.nih.gov/gene/?term=azo1141
azo1142	azo1142	soxE	soxE	1228607	1228906	-	putative sulfide dehydrogenase%2C cytochrome subunit	Putative sulfide dehydrogenase%2C cytochrome subunit. Homology to fccA of C. limicola of 26%25 (sprot|CYSD_CHLLT(SRS)) InterPro: Cytochrome c class I (IPR003088)%3B cytochrome c class IC (IPR008168) Pfam: Cytochrome C signal peptide no TMHs	gene	gene1167	http://www.ncbi.nlm.nih.gov/gene/?term=azo1142
azo1143	azo1143	soxY	soxY	1229108	1229551	+	sulfur covalently-binding protein		gene	gene1168	http://www.ncbi.nlm.nih.gov/gene/?term=azo1143
azo1144	azo1144	soxZ	soxZ	1229562	1229873	+	phosphodiesterase I	Gene Function%3B~High confidence in function and specificity	gene	gene1169	http://www.ncbi.nlm.nih.gov/gene/?term=azo1144
azo1145	azo1145	aceK	aceK	1229883	1231652	-	[Isocitrate dehydrogenase (NADP+)] kinase	Isocitrate dehydrogenase kinase/phosphatase%2C WHEN BACTERIA ARE GROWN ON GLUCOSE IDH IS FULLY ACTIVE AND UNPHOSPHORYLATED BUT WHEN GROWN ON ACETATE THE ACTIVITY OF IDH DECLINES DRASTICALLY CONCOMITANT WITH ITS PHOSPHORYLATION AT MULTIPLE SITES (BY SIMILARITY).%3B~High confidence in function and specificity	gene	gene1170	http://www.ncbi.nlm.nih.gov/gene/?term=azo1145
azo1146	azo1146	icd2	icd2	1232133	1234370	+	isocitrate dehydrogenase[NADP]	Isocitrate dehydrogenase [NADP]. Homology to icd2 of A. eutrophus of 80%25 (trembl|Q8KLU4) This monomeric type of isocitrate dehydrogenase is NADP-specific. It is an important enzyme of the TCA. Interpro: Isocitrate dehydrogenase NADP-dependent%2C monomeric type (IPR004436) Tigrfam: monomer-idh: isocitrate dehydrogenase NADP-dependent no singal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1171	http://www.ncbi.nlm.nih.gov/gene/?term=azo1146
azo1147	azo1147	icd1	icd1	1234547	1235824	+	isocitrate dehydrogenase [NADP]	Isocitrate dehydrogenase [NADP]. Homology to icd1 of A. eutropus of 75%25 (trembl|Q8KLU5) Isocitrate dehydrogenase is an important enzyme of the TCA which catalyzes the reaction: isocitrate + NAD+ %3D 2-oxoglutarate + CO2 + NADH + H+ Pfam: Isocitrate/isopropylmalate dehydrogenase Tigrfam: prok_nadp_idh: isocitrate dehydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1172	http://www.ncbi.nlm.nih.gov/gene/?term=azo1147
azo1148	azo1148		azo1148	1236048	1236302	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ws0602 of W. succinogenes of 63%25 (trembl|Q7MSB5(SRS)) no domains predicted no singal peptide 2 TMHs%3B~Conserved hypothetical protein	gene	gene1173	http://www.ncbi.nlm.nih.gov/gene/?term=azo1148
azo1149	azo1149		azo1149	1236315	1238120	+	conserved hypothetical sodium:solute symporter	Conserved hypothetical sodium:solute symporter. Homology to to ws0601 of W. succinogenes of 68%25 (trembl|Q7M9X9). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force%2C SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars%2C amino acids%2C nucleosides%2C inositols%2C vitamins%2Curea or anions%2C depending on the system. InterPro: Sodium:solute symporter family (IPR001734) Tigrfam: sss: SSS sodium solute transporter superfamily no signal peptide 12 TMHs%3B~Family membership	gene	gene1174	http://www.ncbi.nlm.nih.gov/gene/?term=azo1149
azo1150	azo1150		azo1150	1238249	1238617	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No singal peptide 3 TMHs	gene	gene1175	http://www.ncbi.nlm.nih.gov/gene/?term=azo1150
azo1151	azo1151		azo1151	1238632	1238925	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to vv11244 of V. vulnificus of 42%25 (trembl|Q8DCZ3(SRS)) no domains predicted no signal peptide 2 TMHs%3B~Conserved hypothetical protein	gene	gene1176	http://www.ncbi.nlm.nih.gov/gene/?term=azo1151
azo1152	azo1152	fusA1	fusA1	1238922	1240967	-	putative elongation factor EF-G	Putative elongation factor EF-G. Homology to FusA of E. coli of 29%25 (sprot|EFG_ECOLI(SRS)) This protein promotes the GTP-dependent translocation of the nascent protein chain from the A-site to the P-site of the ribosome. Interpro: Elongation factor G%2C C-terminus (IPR000640)%3B Elongation factor Tu domain 2 (IPR004161)%3B GTP-binding elongation factor (IPR000795)%3B ATP/GTP-binding site motifA (P-loop) (IPR001687) Tigrfam: EF-G: translation elongation factor G Pfam: Elongation factor Tu domain 2%3B Elongation factor Tu GTP binding domain%3B Elongation factor G C-terminus no signal peptide no TMHs%3B~Family membership	gene	gene1177	http://www.ncbi.nlm.nih.gov/gene/?term=azo1152
azo1153	azo1153		azo1153	1241063	1242703	-	putative permeases of the major facilitator superfamily	Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 61%25%3B~Function unclear	gene	gene1178	http://www.ncbi.nlm.nih.gov/gene/?term=azo1153
azo1154	azo1154		azo1154	1243088	1243822	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rsc2670 of R. solanacearum of 64%25 (tremble: Q8XWO5) Pfam: LrgB-like family The two products of the lrgAB operon are potential membrane proteins%2C and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance. no signal peptide 6 TMHs%3B~Conserved hypothetical protein	gene	gene1179	http://www.ncbi.nlm.nih.gov/gene/?term=azo1154
azo1155	azo1155		azo1155	1243819	1244181	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. This family is uncharacterised. It contains the protein LrgA that has been hypothesised to export murein hydrolases TREMBL:Q8XW06: 56%25 identity%2C 73%25 similarity InterPro:IPR005538%3B LrgA. Pfam: PF03788%3B LrgA%3B 1. ProDom: PD009239%3B LrgA Signal peptide present (Signal P predicted) TMH's 3 (TMHMM predicted)%3B~Conserved hypothetical protein	gene	gene1180	http://www.ncbi.nlm.nih.gov/gene/?term=azo1155
azo1156	azo1156		azo1156	1244251	1245189	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Daro03002578 of Dechloromonas aromatica of 75%25 (gi|41723981|ref|ZP_00150871.1|(NBCI ENTREZ)). Has PF07670%2C Nucleoside recognition%3B This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins. In the FeoB proteins%2C which are believed to be Fe2+ transporters%2C it includes the membrane pore region%2C so the function of this region is likely to be more general than just nucleoside specificity. This family may represent the pore and gate%2C with a wide potential range of specificity. Hence its name 'Gate'. no signal peptide. 2 TMHs%3B~Conserved hypothetical protein	gene	gene1181	http://www.ncbi.nlm.nih.gov/gene/?term=azo1156
azo1157	azo1157		azo1157	1245583	1245789	-	hypothetical secreted protein	Hypothetical secreted protein. Signal Peptide present. No good homolgous hits in the PDB. No TMHs No domains predicted.	gene	gene1182	http://www.ncbi.nlm.nih.gov/gene/?term=azo1157
azo1158	azo1158	ncd2	ncd2	1246197	1247258	+	probable 2-nitropropane dioxygenase	TREMBL:Q9HWH9: 45%25 identity%2C 52%25 similarity 2-nitropropane dioxygenase (EC 1.13.11.32) (Nitroalkane oxidase) (2-NPD). CATALYZES THE OXYGENATIVE DENITRIFICATION OF VARIOUS ANIONIC NITROALKANES. InterPro: 2-nitropropane dioxygenase InterPro:IPR004136%3B 2nprop_dioxygen. IPR003009%3B FMN_enzyme. Pfam PF03060%3B NPD thiE: thiamine-phosphate pyrophosphoryl No transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity	gene	gene1183	http://www.ncbi.nlm.nih.gov/gene/?term=azo1158
azo1159	azo1159	aceB	aceB	1247367	1248971	-	AceB protein	Malate synthase. Homology to aceB of A. eutropus of 73%25 (trembl|Q8VM95). CATALYTIC ACTIVITY: Acetyl-CoA + H(2)O + glyoxylate %3D S-malate + CoA. Acts in the glyoxylate bypass. Pfam: Malate synthase no TMHs 1 HTH%3B~High confidence in function and specificity	gene	gene1184	http://www.ncbi.nlm.nih.gov/gene/?term=azo1159
azo1160	azo1160		azo1160	1248990	1249772	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to mlr4286 of M. loti of 43%25 (trembl|Q98EE2) InterPro: IPR002781%3B DUF81.This domain is found in integral membrane proteins of prokaryotes which are uncharacterized Pfam:PF01925%3B DUF81 Signal peptide present and presence of 6 transmembrane helices%3B~Conserved hypothetical protein	gene	gene1185	http://www.ncbi.nlm.nih.gov/gene/?term=azo1160
azo1161	azo1161		azo1161	1249955	1250920	+	putative transcriptional regulator%2CLysR family	Transcriptional regulator%2C LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 29%25 1 helixturnhelix PF03466 LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~Specificity unclear	gene	gene1186	http://www.ncbi.nlm.nih.gov/gene/?term=azo1161
azo1162	azo1162	ttuD	ttuD	1250865	1252127	-	probable hydroxypyruvate reductase	Putative hydroxypyruvate reductase. Degrades an unidentified toxic product from the first step of tartrate degradation. Involved in the second step of the tartrate degradation pathway. 59%25 MOFRL.IPR005346%3B UPF0125. Pfam:PF05161%3B MOFRL%3B 1.PF03658%3B UPF0125%3B 1. Signal peptide present.%3B~High confidence in function and specificity	gene	gene1187	http://www.ncbi.nlm.nih.gov/gene/?term=azo1162
azo1163	azo1163	gip	gip	1252153	1252941	-	putative hydroxypyruvate isomerase	Hydroxypyruvate isomerase (EC 5.3.1.22).Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde).Belongs to the hyi family. 52%25%3B~High confidence in function and specificity	gene	gene1188	http://www.ncbi.nlm.nih.gov/gene/?term=azo1163
azo1164	azo1164		azo1164	1253717	1254214	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ORF153 of Rubrivivax gelatinosus of 48%25 (gi|55832787|gb|AAV66902.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene1189	http://www.ncbi.nlm.nih.gov/gene/?term=azo1164
azo1165	azo1165	lctP	lctP	1254523	1256169	-	LctP protein	L-lactate permease. Homology to lctP of E. coli of 72%25 (sprot|LLDP_ECOLI) Transports L-lactate across the membrane. Can also transport D-lactate and glycolate. Seems to be driven by a proton motive force (By similarity). Tigrfam: lctP: L-lactate transport Pfam: L-lactate permease signal peptide 12 TMHs%3B~High confidence in function and specificity	gene	gene1190	http://www.ncbi.nlm.nih.gov/gene/?term=azo1165
azo1166	azo1166		azo1166	1256528	1259305	-	conserved hypothetical iron-sulfur bindinding oxidase	Conserved hypothetical iron-sulfur binding oxidase. Homology to pa4772 of P. aeruginosa of 53%25 (pir|H83050) InterPro: FAD linked oxidase C-terminal (IPR004413) Pfam: FAD binding domain %3B Fad linked oxidase%2C C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~Family membership	gene	gene1191	http://www.ncbi.nlm.nih.gov/gene/?term=azo1166
azo1167	azo1167		azo1167	1259517	1260968	-	conserved hypothetical iron-sulfur protein	Conserved hypothetical iron-sulfur protein. Homology to cv3028 of C. violaceum of 68%25 (trembl|Q7NTM6) Tigrfam: TIGR00273: iron-sulfur cluster binding protein Pfam: 4Fe-4S binding domain no TMHs no signal peptide%3B~Conserved hypothetical protein	gene	gene1192	http://www.ncbi.nlm.nih.gov/gene/?term=azo1167
azo1168	azo1168		azo1168	1260965	1261639	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to DVU1781 of D.vulgaris of 45%25 (tremble:Q72B57). Has PF02589 DUF162 domain:Uncharacterized ACR%2C YkgG family. No signal peptide or TMH reported present.	gene	gene1193	http://www.ncbi.nlm.nih.gov/gene/?term=azo1168
azo1169	azo1169		azo1169	1261636	1262442	-	conserved hypothetical protein	Conserved hypothetical protein. Homologyt to nma1648 of N. meiningitidis of 55%25 (trembl|Q825P5) InterPro: Domain of unknown function DUF224 (IPR004017) Pfam: Domain of unknown function no signal no TMHS	gene	gene1194	http://www.ncbi.nlm.nih.gov/gene/?term=azo1169
azo1170	azo1170	lldR	lldR	1262710	1263492	+	probable L-lactate dehydrogenase operon regulatory protein	Putative L-lactate dehydrogenase operon regulatory protein%2C%3B~High confidence in function and specificity	gene	gene1195	http://www.ncbi.nlm.nih.gov/gene/?term=azo1170
azo1171	azo1171		azo1171	1264770	1265240	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide. no TMH	gene	gene1196	http://www.ncbi.nlm.nih.gov/gene/?term=azo1171
azo1172	azo1172		azo1172	1265498	1265653	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56%25 (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs	gene	gene1197	http://www.ncbi.nlm.nih.gov/gene/?term=azo1172
azo1173	azo1173		azo1173	1265650	1266129	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to the C-terminus of ne0717 of N. europaea of 57%25 (trembl|Q82WG3). Pfam: Protein of unknown function (DUF1294). No signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene1198	http://www.ncbi.nlm.nih.gov/gene/?term=azo1173
azo1174	azo1174		azo1174	1266287	1266538	+	hypothetical protein	Hypothetical protein. No homology to the data bank. No domains predicted. No signal peptide. No TMHs	gene	gene1199	http://www.ncbi.nlm.nih.gov/gene/?term=azo1174
azo1175	azo1175	nirB	nirB	1266596	1269127	+	nitrite reductase (NAD(P)H) large subunit%2Cprobable.	Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4). 76%25 EGF_like.IPR001327%3B FAD_pyr_redox. IPR007419%3BFer2_BFD.IPR006066%3B Nir_Si.IPR006067%3B Nir_Sir_4Fe4S. IPR005117%3B NiR_SiR_beta_fer. IPR001100%3B Pyr_redox. Pfam: PF04324%3B Fer2_BFD%3B 1.PF01077%3B NIR_SIR%3B 1.PF03460%3B NIR_SIR_ferr%3B 1. PF00070%3B Pyr_redox%3B 1. In E.coli%2C the NADH-dependent nitrite reductase catalyzes the six-electron reduction of nitrite to ammonia and also catalyzes the two-electron reduction of hydroxylamine to ammonia. The enzyme is a FAD-flavoprotein%2C and also contains a siroheme and one 2Fe-2S center.%3B~High confidence in function and specificity	gene	gene1200	http://www.ncbi.nlm.nih.gov/gene/?term=azo1175
azo1176	azo1176	nirD	nirD	1269149	1269487	+	nitrite reductase small subunit%2C probable.	Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4). REQUIRED FOR ACTIVITY OF THE REDUCTASE. 66%25 simialr to the nirD protein from R. solanacearum%2Ca probable nitrite reductase NADPH (small subunit) oxidoreductase protein [EC:1.7.1.4]. TREMBL:Q8XQK3. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit In E.coli%2C the NADH-dependent nitrite reductase catalyzes the six-electron reduction of nitrite to ammonia and also catalyzes the two-electron reduction of hydroxylamine to ammonia. The enzyme is a FAD-flavoprotein%2C and also contains a siroheme and one 2Fe-2S center.%3B~Conserved hypothetical protein	gene	gene1201	http://www.ncbi.nlm.nih.gov/gene/?term=azo1176
azo1177	azo1177	nirC	nirC	1269519	1270331	+	putative nitrite transporter	76%25 For/Nit_transpt. Pfam: PF01226%3B Form_Nir_trans%3B 1. In E. coli%2C NirC is a putative nitrite transporter which is a member of the FNT family of formate and nitrite transporters. The nirC gene is located in the nir operon which codes for a NADH-dependent nitrite reductase. NirC may function to import nitrite as a substrate for this enzyme complex. The nir operon is anaerobically expressed and is repressed by oxygen. TMhelix:6%3B~High confidence in function and specificity	gene	gene1202	http://www.ncbi.nlm.nih.gov/gene/?term=azo1177
azo1178	azo1178		azo1178	1270372	1272093	+	putative serine/threonine protein kinase	Putative serin/threonin protein kinase%2C%3B~Family membership	gene	gene1203	http://www.ncbi.nlm.nih.gov/gene/?term=azo1178
azo1179	azo1179	allA	allA	1272191	1272715	-	ureidoglycolate hydrolase	High confidence in function and specificity	gene	gene1204	http://www.ncbi.nlm.nih.gov/gene/?term=azo1179
azo1180	azo1180	alc	alc	1272715	1273755	-	Allantoicase	Allantoicase (Allantoate amidinohydrolase)%3B~High confidence in function and specificity	gene	gene1205	http://www.ncbi.nlm.nih.gov/gene/?term=azo1180
azo1181	azo1181		azo1181	1274116	1275063	-	conserved hypothetical deacetylase protein	Polysaccharide deacetylase family protein.This family of polysaccharide deacetylases includes NodB(nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase.It also includes chitin deacetylase from yeast%2Cand endoxylanases which hydrolyses glucosidic bonds in xylan. 62%25 Polysac_deacet. Pfam:PF01522%3B Polysacc_deac_1. TIGR:PP4286.%3B~Function unclear	gene	gene1206	http://www.ncbi.nlm.nih.gov/gene/?term=azo1181
azo1182	azo1182		azo1182	1275084	1275611	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS01483 of R.solanacearum of 55%25 (tremble:Q8XXJ2). No domains predicted. No TMHs. No signal peptide.	gene	gene1207	http://www.ncbi.nlm.nih.gov/gene/?term=azo1182
azo1183	azo1183		azo1183	1275648	1276844	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS01489 of Ralstonia solanacearum of 50%25 (trembl|Q8XXJ8(SRS)) Has PF06181:Protein of unknown function (DUF989)%3BThis family consists of several hypothetical bacterial proteins of unknown function. no signal peptide 8 TMHs%3B~Conserved hypothetical protein	gene	gene1208	http://www.ncbi.nlm.nih.gov/gene/?term=azo1183
azo1184	azo1184		azo1184	1276863	1277213	-	conserved hypothetical transthyretin	Conserved hypothetical transthyretin. Homology to pa1518 of P. aeruniosa of 62%25 (sprot|YF18_PSEAE) InterPro: Transthyretin precursor (IPR000895) Pfam: Transthyretin precursor no signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1209	http://www.ncbi.nlm.nih.gov/gene/?term=azo1184
azo1185	azo1185	pip	pip	1277327	1278304	-	probable proline iminopeptidase	TREMBL:Q8PC98: 42%25 identity%2C 54%25 similarity. Proline iminopeptidase (EC 3.4.11.5) (Prolyl aminopeptidase) (PAP). SPECIFICALLY CATALYZES THE REMOVAL OF N-TERMINAL PROLINE RESIDUES FROM PEPTIDES (BY SIMILARITY). InterPro:IPR000073%3B A/b_hydrolase. IPR003089%3B AB_hydrolase. IPR002410%3B Peptidase_S33. IPR005944%3B Pept_S33. IPR000379%3B Ser_estrs. Pfam PF00561%3B Abhydrolase_1%3B TIGRFAMs: TIGR01249%3B pro_imino_pep_1 TIGR00149: conserved hypothetical protein%3B~Specificity unclear	gene	gene1210	http://www.ncbi.nlm.nih.gov/gene/?term=azo1185
azo1186	azo1186		azo1186	1278781	1279233	+	hypothetical protein		gene	gene1211	http://www.ncbi.nlm.nih.gov/gene/?term=azo1186
azo1187	azo1187	pqqB	pqqB	1279714	1280628	+	probable coenzyme PQQ synthesis protein B	Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone biosynthesis protein B) (Coenzyme PQQ synthesis protein D)%3B~High confidence in function and specificity	gene	gene1212	http://www.ncbi.nlm.nih.gov/gene/?term=azo1187
azo1188	azo1188	pqqC	pqqC	1280664	1281455	+	coenzyme PQQ synthesis protein C	Coenzyme PQQ synthesis protein C .is a member of six genes%2C constituting the pqqABCDEF operon%2C which are required for the synthesis of the cofactor pyrroloquinoline quinone (PQQ).This family consists of several bacterial coenzyme PQQ synthesis protein C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is the prosthetic group of several bacterial enzymes%2Cincluding methanol dehydrogenase of methylotrophs and the glucose dehydrogenase of a number of bacteria. PQQC has been found to be required in the synthesis of PQQ but its function is unclear. Shares 60%25 identity(75%25 similarity) with pqqC gene from Klebsiella pneumoniae. pfam05312%2C Q88QV6 mazG: MazG family protein%3B~High confidence in function and specificity	gene	gene1213	http://www.ncbi.nlm.nih.gov/gene/?term=azo1188
azo1189	azo1189	pqqD	pqqD	1281634	1281900	+	PqqD protein	Coenzyme PQQ synthesis protein D .This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis. 65%25 similarity with Klebsiella pneumoniae and 80%25%3B~Family membership	gene	gene1214	http://www.ncbi.nlm.nih.gov/gene/?term=azo1189
azo1190	azo1190	pqqE	pqqE	1281902	1283056	+	pyrroloquinoline quinone synthesis protein E	Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis protein E).PART OF THE PQQ OPERON. Q88QV8: 58%25 identity%2C 74%25 similarity with Klebsiella pneumoniae InterProIPR000385%2C InterProIPR007197%2CPfamPF04055%2C SMARTSM00729%2C InterProIPR006638 cofactor:iron-sulfur cluster (potential). pathway:pyrroloquinoline quinone (pqq) biosynthesis. similarity: belongs to the radical sam superfamily%2C pqqE family TIGR PP0376%3B HAMAP MF_00660%3B Pfam PF04055%3B Radical_SAM%3B PROSITE: PS01305%3B MOAA_NIFB_PQQE%3B~High confidence in function and specificity	gene	gene1215	http://www.ncbi.nlm.nih.gov/gene/?term=azo1190
azo1191	azo1191		azo1191	1283387	1283563	-	Hypothetical protein	Hypothetical protein. Has very bad homology with hits in the database. No Signficant motifs%2C domains or Signal peptide known to be present.	gene	gene1217	http://www.ncbi.nlm.nih.gov/gene/?term=azo1191
azo1192	azo1192		azo1192	1283668	1284468	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to XAC0112 of X.axonopodis of 44%25 (trembl:Q8PR54). No domains predicted. No TMHs. No signal peptide.	gene	gene1218	http://www.ncbi.nlm.nih.gov/gene/?term=azo1192
azo1193	azo1193	hppD	hppD	1284477	1285598	-	probable 4-hydroxyphenylpyruvate dioxygenase	Probable 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase). Homology to hppD of Pseudomonas sp. of 56%25 (pir|S21209) Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 %3D homogentisate + CO2. Pfam: Glaxolase/Bleomycin resistance protein no signal peptide no TMHs%3B~Family membership	gene	gene1219	http://www.ncbi.nlm.nih.gov/gene/?term=azo1193
azo1194	azo1194		azo1194	1286022	1287257	+	putative integral membrane efflux protein	Permease member of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 2A0121: H+ Antiporter protein 24%25 similarity to NorA who confer relatively high resistance to hydrophilic quinolones such as norfloxacin%2C enoxacin%2C ofloxacin%2C and ciprofloxacin in S. aureus. 20%25 similarity to TapA a multidrug efflux pump wich confers low level of resistance to aminoglycosides and tetracycline in Mycobaterium fortuitum and M. tuberculosis.%3B~Specificity unclear	gene	gene1220	http://www.ncbi.nlm.nih.gov/gene/?term=azo1194
azo1195	azo1195	argM	argM	1287319	1288497	+	probable acetylornithine transaminase	Probable acetylornithine transaminase. Homology to argM of E. coli of 45%25 (sprot|ARGM_ECOLI). Catalyzes the transmination of n(2)-succinylornithine and alpha-ketoglutarate into n(2)-succinylglutamate semialdehyde and glutamate. Can also act as a acetylornithine aminotransferase. Tigrfam: argD: acetylornithine and succinylornithine aminotransferases Pfam: Aminotransferse class-III no TMHs%3B~High confidence in function and specificity	gene	gene1221	http://www.ncbi.nlm.nih.gov/gene/?term=azo1195
azo1196	azo1196		azo1196	1288769	1289806	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ypo3484 of y. pestis of 60%25 (trembl|Q8ZBD2). Pfam: Luciferase-like monooxygenase. no signla peptide no TMHs	gene	gene1222	http://www.ncbi.nlm.nih.gov/gene/?term=azo1196
azo1197	azo1197		azo1197	1289811	1290620	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to NE1163 of N.europaea of 76%25 (tremble:Q82VD1) Has PF02649%2CUncharacterized ACR%2C DUF198 Domain%3B No signal peptide or TMH reported present.	gene	gene1223	http://www.ncbi.nlm.nih.gov/gene/?term=azo1197
azo1198	azo1198	dxs	dxs	1290707	1292566	-	probable 1-deoxy-D-xylulose 5-phosphate synthase	The enzyme 1-deoxy-D-xylulose 5-phosphate (DXP) synthase%2C probably a Dxs homodimer [ Kuzuyama00 ] %2C acts in the mevalonate-independent pathway of isopentenyl diphosphate biosynthesis%2C in thiamin biosynthesis%2C and pyridoxal biosynthesis [ Sprenger97 ].Overproduction of Dxs affects flux through the pathway under some circumstances.Dxs has similarity to transketolases [ Lois98 ] Entry name SWISSPROT:DXS_ECOLI Prim. accession # P77488 Identities %3D 358/614 (58%25) InterPro:- IPR005477%3B Dxs_synth. IPR009014%3B Transketo_C_like. IPR005476%3B Transketolase_C. IPR005475%3B Transketolase_CR. IPR005474%3B Transketolase_N. Pfam PF02779%3B transket_pyr%3B 1. PF02780%3B transketolase_C%3B 1. Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene1224	http://www.ncbi.nlm.nih.gov/gene/?term=azo1198
azo1199	azo1199	ispA	ispA	1292594	1293496	-	Geranyltranstransferase	Geranylgeranyl pyrophosphate synthetase chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltransferase (EC 2.5.1.1)%3B Geranyltranstransferase (EC 2.5.1.10)%3B Farnesyltranstransferase (EC 2.5.1.29)]. catalyzes the trans-addition of the three molecules of ipp onto dmapp to form geranylgeranyl pyrophosphate. InterPro: Polyprenyl synthetase%3B~High confidence in function and specificity	gene	gene1225	http://www.ncbi.nlm.nih.gov/gene/?term=azo1199
azo1200	azo1200	xseB	xseB	1293493	1293747	-	Exodeoxyribonuclease VII	Probable Probable exodeoxyribonuclease VII small subunit . InterPro: Exonuclease VII small subunit.%3B~Function unclear	gene	gene1226	http://www.ncbi.nlm.nih.gov/gene/?term=azo1200
azo1201	azo1201	alcE	alcE	1293877	1294977	+	putative iron-sulfur protein	AlcE: iron-sulfur-containing dioxygenases%2C probably involved in alcaligin biosynthesis pathway in Bordetella species. Putative iron-sulfure protein involved in aromatic compounds degradations. Choline monooxygenase chloroplast precursor (EC 1.14.15.7). Catalyzes the first step of the osmoprotectant glycine betaine synthesis. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit hypA: hydrogenase expression/formation pr%3B~Function unclear	gene	gene1227	http://www.ncbi.nlm.nih.gov/gene/?term=azo1201
azo1202	azo1202	lytB	lytB	1295352	1296290	-	probable 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2). Function:- Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) (By similarity). InterPro: LytB protein lytB: penicillin tolerance protein LytB SWISSPROT:ISPH_ECOLI Prim. accession # P22565 Identities %3D 185/308 (60%25) InterPro IPR003451%3B LytB. Pfam PF02401%3B LYTB%3B 1. TIGRFAMs TIGR00216%3B ispH_lytB%3B 1. TMHMM 0.0%2C Signal peptide probability: 0.000 Prediction: Non-secretory protein%3B~Family membership	gene	gene1228	http://www.ncbi.nlm.nih.gov/gene/?term=azo1202
azo1203	azo1203	slpA	slpA	1296320	1296748	-	putative peptidyl-prolyl cis-trans isomerase	Putative peptidyl-prolyl cis-trans isomerase. Homology to slpA of E. coli of 39%25 (sprot|FKBX_ECOLI) Accelerate protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)(IPR001179) Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase no signal peptide no TMHs%3B~Family membership	gene	gene1229	http://www.ncbi.nlm.nih.gov/gene/?term=azo1203
azo1204	azo1204	lspA	lspA	1296745	1297275	-	probable signal peptidase II	Probable signal peptidase II (EC 3.4.23.36) (Prolipoprotein signal peptidase) (Signal peptidase II) (SPase II). This protein specifically catalyzes the removal of signal peptides from prolipoproteins (By similarity). lspA: lipoprotein signal peptidase Pfam: Peptidase_AS probable 5 TMH no signal peptide%3B~High confidence in function and specificity	gene	gene1230	http://www.ncbi.nlm.nih.gov/gene/?term=azo1204
azo1205	azo1205		azo1205	1297268	1300066	-	IleS protein	Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS).%3B~High confidence in function and specificity	gene	gene1231	http://www.ncbi.nlm.nih.gov/gene/?term=azo1205
azo1206	azo1206	ribF	ribF	1300081	1301079	-	riboflavin kinase / FMN adenylyltransferase.	Riboflavin biosynthesis protein ribF [Includes: Riboflavin kinase (EC 2.7.1.26) (Flavokinase)%3B FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)]. ribF: riboflavin biosynthesis protein R%3B~High confidence in function and specificity	gene	gene1232	http://www.ncbi.nlm.nih.gov/gene/?term=azo1206
azo1207	azo1207		azo1207	1301459	1301782	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No signal peptide. No TMHs	gene	gene1233	http://www.ncbi.nlm.nih.gov/gene/?term=azo1207
azo1208	azo1208	gloB1	gloB1	1301779	1302555	+	probable hydroxyacylglutathione hydrolase	Hydroxyacylglutathione hydrolase (EC 3.1.2.6) (Glyoxalase II) (Glx II). Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid. Zn dependent Hydrolase belonging to glyoxalase II family of proteins. Presence of KOW motif%2Cand PA domain.Presence of signal peptide. probably functioning as Carbamoylphosphate synthase L chain. 50%25 identity and 60%25 similarity to Bordetella pertussis hydrolase. InterPro: Metallo-beta-lactamase superfamily gidA: glucose-inhibited division protein%3B~Family membership	gene	gene1234	http://www.ncbi.nlm.nih.gov/gene/?term=azo1208
azo1209	azo1209		azo1209	1302969	1303301	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No TMHs. No signal peptide.	gene	gene1235	http://www.ncbi.nlm.nih.gov/gene/?term=azo1209
azo1210	azo1210		azo1210	1303298	1304290	+	putative GTPase	TREMBLnew:CAE26305: 46%25 identity%2C 65%25 similarity. sprot:YJIA_ECOLI%2C 33%25 identity%2C 55%25 similarity Hypothetical protein. Pfam:cobW: Cobalmine synthesis protein%3B ABC_tran TIGRFAM: MMR_HSR1- GTPASE of unknown function InterPro: Cobalamin synthesis protein/P47K mobB: molybdopterin-guanine dinucleotid%3B~Conserved hypothetical protein	gene	gene1236	http://www.ncbi.nlm.nih.gov/gene/?term=azo1210
azo1211	azo1211		azo1211	1304287	1305360	+	conserved hypothetical protein	Conserved hypothetical protein. Homology bll7767 of B. japonicum of 30%25 (trembl|Q89CN0) Pfam: WD domain%2C G-beta repeat no signal peptide no TMHs	gene	gene1237	http://www.ncbi.nlm.nih.gov/gene/?term=azo1211
azo1212	azo1212		azo1212	1305397	1305612	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Rsph03000178 of Rhodobacter sphaeroides of 37%25. No domains predicted. No signal peptide. No TMHs	gene	gene1238	http://www.ncbi.nlm.nih.gov/gene/?term=azo1212
azo1213	azo1213	qbdB1	qbdB1	1305750	1306688	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to qbdB of Pseudomonas putida of 50%25 (gi|22779360|dbj|BAC15558.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene1239	http://www.ncbi.nlm.nih.gov/gene/?term=azo1213
azo1214	azo1214		azo1214	1306817	1307347	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Rgel02003151 of Rubrivivax gelatinosus of 37%25 (gi|47572524|ref|ZP_00242567.1|(NBCI ENTREZ)). PF06496%2CProtein of unknown function (DUF1097)%3BIPR009476%3BThis family consists of several bacterial putative membrane proteins. signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene1240	http://www.ncbi.nlm.nih.gov/gene/?term=azo1214
azo1215	azo1215	mntC2	mntC2	1307593	1308540	+	putative periplasmic solute binding protein	Part of the ABC transporter complex mntABC involved in manganese uptake. 28%25 Similar to the putative periplasmic-binding protein MntC precursor in N gonorrhoaeae%2C also involved in the resistance to oxidative stress. TREMBL:Q9F4F6 InterPro:IPR006128%3B Lipoprotein_4.IPR006127%3B SBP_bac_9. Pfam:PF01297%3B SBP_bac_9%3B 1. Signal peptide present.TMHelix:1 This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.This protein also could act as an adhesin which is involved on adherence to extracellular matrix.%3B~High confidence in function and specificity	gene	gene1241	http://www.ncbi.nlm.nih.gov/gene/?term=azo1215
azo1216	azo1216	mntA2	mntA2	1308560	1309357	+	putative manganese transport system ATP-binding protein	Manganese transport system ATP-binding protein mntA. This protein is probably a component of a manganese permease a binding protein-dependent ATP-driven transport system (mntABC). Probably responsible for energy coupling to the transport system. 40%25 AAA_ATPase.IPR003439%2CAAA ATPase superfamily%3B ABC_transporter. Pfam: PF00005%3B ABC_tran%3B 1. This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity	gene	gene1242	http://www.ncbi.nlm.nih.gov/gene/?term=azo1216
azo1217	azo1217	mntB2	mntB2	1309369	1310265	+	putative manganese transport system permease protein	Part of the ABC transporter complex mntABC involved in manganese import. Probably responsible for the translocation of the substrate across the membrane. 28%25 IPR001626%3B ABC_transpt3. Pfam%3B PF00950%3B ABC-3%3B 1. TmHelix:8 This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity	gene	gene1243	http://www.ncbi.nlm.nih.gov/gene/?term=azo1217
azo1218	azo1218	mntB3	mntB3	1310262	1311221	+	putative manganese transport system permease protein	Part of the ABC transporter complex mntABC involved in manganese import. Probably responsible for the translocation of the substrate across the membrane. Similar to the permease protein%2C MntB in Synechocystis 6803. 30%25 IPR001626%3B ABC_transpt3. Pfam%3B PF00950%3B ABC-3%3B 1. This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity	gene	gene1244	http://www.ncbi.nlm.nih.gov/gene/?term=azo1218
azo1219	azo1219		azo1219	1311744	1313414	+	conserved hypothetical aromatic/alkene monooxygenase%2C subunit alpha	Conserved hypothetical aromatic/alkene monooxygenase%2C subunit alpha Homology to blr3677 of B. japonicum (trembl|Q89P06(SRS) Bacterial aromatic/alkene monooxygenase is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives (like methane and toulene). InterPro:IPR003430 Pfam: Methane/Phenol/Toluene hydroxylase (PF02332) no signal peptide no TMHs%3B~Specificity unclear	gene	gene1245	http://www.ncbi.nlm.nih.gov/gene/?term=azo1219
azo1220	azo1220		azo1220	1313496	1314539	+	conserved hypothetical aromatic/alkene monooxygenase%2C subunit gamma	Conserved hypothetical aromatic/alkene monooxygenase%2C subunit gamma. Homology to blr3678 of B. japonicum of 60%25 (trembl|Q89P05(SRS) Bacterial aromatic/alkene monooxygenase is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives (like methane and toulene). Interpro: Phenol hydroxylase reductase family (IPR001221)%3B Oxidoredutase FAD and NAD(P)-binding domain (IPR000134)%3B NADH:cytochrome b5 reductase (CBR) (IPR000134) Pfam: 2Fe-2S iron-sulfur cluster binding domain%3B oxidoreductase FAD-binding domain%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs%3B~Specificity unclear	gene	gene1246	http://www.ncbi.nlm.nih.gov/gene/?term=azo1220
azo1221	azo1221		azo1221	1314604	1315695	+	conserved hypothetical aromatic/alkene monooxygenase%2C subunit beta	Conserved hypothetical aromatic/alkene monooxygenase%2C subunit beta Homology to blr3679 of B. japonicum of 53%25 (trembl|Q89P04(SRS) Bacterial aromatic/alkene monooxygenase is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives (like methane and toulene). Interpro: Methane/Penol/Toluene hydroxylase (IPR003430) Pfam: Methane/Penol/Toluene hydroxylase (PF02332) no signal peptide no TMHs%3B~Specificity unclear	gene	gene1247	http://www.ncbi.nlm.nih.gov/gene/?term=azo1221
azo1222	azo1222	dmpM	dmpM	1315744	1316100	+	phenol 2-monooxygenase	Phenol hydroxylase P2 protein (Phenol 2-monooxygenase P2 component)68%25 similarity to SWISSPROT:P19731%2CPseudomonas sp DmpM or Phenol hydroxylase protein component P2%2C this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase . Phenol hydroxylase catabolises phenol and some of its methylated derivatives in the first step of phenol biodegradation%2C and is required for growth on phenol. The multicomponent enzyme is made up of P0%2C P1%2C P2%2C P3%2C P4 and P5 polypeptides. Pfam:PF02406%2C InterPro:IPR003454 91%25 similarity with hypothetical protein Rgel01002820 [Rubrivivax gelatinosus PM1] NO Signal Peptide No TMH's. MmoB/DmpM family%3B~High confidence in function and specificity	gene	gene1248	http://www.ncbi.nlm.nih.gov/gene/?term=azo1222
azo1223	azo1223	groEL2	groEL2	1316323	1317960	+	probable chaperonin GroEL	Probable chaperonin GroEL. Homology to groEL of B. japonicum of 43%25 (SWISSPROT:CH61_BRAJA). Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity). InterPro: TCP-1 (Tailless complex polypeptide)/cpn60 chaperonin family (IPR002423)%3B chaperonin cpn60 (IPR001844) Pfam: TCP-1/cpn 60 chaperonin family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1249	http://www.ncbi.nlm.nih.gov/gene/?term=azo1223
azo1224	azo1224		azo1224	1318051	1318197	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH	gene	gene1250	http://www.ncbi.nlm.nih.gov/gene/?term=azo1224
azo1225	azo1225		azo1225	1318385	1320445	+	Sigma-54 dependent transcriptional regulator	Some bacterial regulatory proteins activate the expression of genes from promoters recognized by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent interaction with sigma-54%2C TREMBL:Q8RM05 (41%25 identity)%3B TREMBL:Q880V5 (32%25 identity). Pfam (PF02954): Bacterial regulatory protein%2CFis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif.%3B~Family membership	gene	gene1251	http://www.ncbi.nlm.nih.gov/gene/?term=azo1225
azo1226	azo1226	lguL	lguL	1320918	1321319	+	lactoylglutathione lyase	Glyoxalase I catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. Similar to trembl|Q8YEJ0 (61%25)%2C to trembl|Q8DB12 (58%25) and to trembl|Q8UCM7 (52%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase%3B~Specificity unclear	gene	gene1252	http://www.ncbi.nlm.nih.gov/gene/?term=azo1226
azo1227	azo1227		azo1227	1321373	1321966	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to blr7490 of B. japonicum of 31%25 (trembl|Q89DE9(SRS)). No domains predicted. No TMHs Signal peptide present%3B~Conserved hypothetical protein	gene	gene1253	http://www.ncbi.nlm.nih.gov/gene/?term=azo1227
azo1228	azo1228	gdhAlpha1	gdhAlpha1	1321992	1323557	+	putative glucose dehydrogenase alpha subunit	Putative glucose dehydrogenase alpha subunit. Homology to gdhAlpha of B. cepacia of 29%25 (trembl|Q8GQE7) InterPro: NAD binding site (IPR000205) Pfam: GMC oxidoreductase no signal peptide no TMHs%3B~Function unclear	gene	gene1254	http://www.ncbi.nlm.nih.gov/gene/?term=azo1228
azo1229	azo1229		azo1229	1323688	1324407	+	hypothetical secreted protein	Hypothetical secreted protein. No good homology with hits in the database. Signal peptide present. No TMHs. No domains predicted	gene	gene1255	http://www.ncbi.nlm.nih.gov/gene/?term=azo1229
azo1230	azo1230		azo1230	1324442	1324726	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C 40%25 identity (49%25 Similarity) to TrEMBL%3BQ6D7F7. Signa P reporting Signal peptide present. TMHMM2 reporting 2 TMH's present.%3B~Conserved hypothetical protein	gene	gene1256	http://www.ncbi.nlm.nih.gov/gene/?term=azo1230
azo1231	azo1231	cydB	cydB	1324874	1326016	-	probable cytochrome bd type terminal oxidase%2Csubunit II	Cytochrome D ubiquinol oxidase subunit II (EC 1.10.3.-) (Cytochrome BD-I oxidase subunit II). Cytochrome bd type terminal oxidases catalyse quinol dependent%2C Na+ independent oxygen uptake. Members of this family are integral membrane proteins and contain a protoheame IX center B558. It may play an important role in microaerobic nitrogen fixation. Tigrfam: cydB: cytochrome d ubiquinol oxidase subunit II Pfam: cytochrome oxidase subunit II no signal peptide 8 TMHs%3B~High confidence in function and specificity	gene	gene1257	http://www.ncbi.nlm.nih.gov/gene/?term=azo1231
azo1232	azo1232	cydA	cydA	1326028	1327596	-	probable cytochrome bd type terminal oxidase%2Csubunit I	Probable cytochrome bd type terminal oxidase%2Csubunit I. Homology to cydA of A. vinelandii of 67%25 (sprot|CYDA_AZOVI). Cytochrome bd type terminal oxidases catalyse quinol dependent%2C Na+ independent oxygen uptake. Members of this family are integral membrane proteins and contain a protoheame IX center B558. It may play an important role in microaerobic nitrogen fixation. InterPro: Cytochrome bd ubiquinol oxidase subunit I (IPR002585) Pfam: Bacterial cytochrome ubiquinol oxidase no singal peptide 9 TMHs%3B~High confidence in function and specificity	gene	gene1258	http://www.ncbi.nlm.nih.gov/gene/?term=azo1232
azo1233	azo1233		azo1233	1327586	1327813	-	hypothetical membrane protein	Hypothetical membrane protein. no homology to to the data bank. no domains predicted. no signal peptide. 1 TMHs	gene	gene1259	http://www.ncbi.nlm.nih.gov/gene/?term=azo1233
azo1234	azo1234		azo1234	1327954	1329348	+	probable transcriptional regulator	Probable ranscriptional regulator%2C%3B~Specificity unclear	gene	gene1260	http://www.ncbi.nlm.nih.gov/gene/?term=azo1234
azo1235	azo1235	petA2	petA2	1329607	1330194	+	probable ubiquinol-cytochrome C reductase iron-sulfur protein	Ubiquinol-cytochrome C reductase iron-sulfur protein. Homology to petA of R. gelantinosus of 60%25 (trembl|Q93SY7). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. Pfam: Riedke [2Fe-2S] domain no TMHs signal peptide%3B~High confidence in function and specificity	gene	gene1261	http://www.ncbi.nlm.nih.gov/gene/?term=azo1235
azo1236	azo1236		azo1236	1330265	1332022	+	ABC transporter permease and ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q88H94 (52%25 identity)%3B TREMBL:Q9RXZ1 (29%25 identity)%3B SWISSPROT:Q9WYC4 (25%25 identity). Pfam (PF00664): ABC transporter transmembrane region. Pfam (PF00005): ABC transporter. TMHMM reporting six transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership	gene	gene1262	http://www.ncbi.nlm.nih.gov/gene/?term=azo1236
azo1237	azo1237	subC	subC	1332019	1332723	+	Subtilisin	Subtilisin Savinase precursor%2C 36%25 identity to SwissProt%3B P29600. Has PF00082%2C Subtilase family%3BIPR000209%2C Pept_S8_S53%3BSubtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad%2C like that found in the trypsin serine proteases (see Trypsin). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet%2C order 2314567. PROSITE%3B) PS00136%3B SUBTILASE_ASP%3B 1. PS00137%3B SUBTILASE_HIS%3B 1. PS00138%3B SUBTILASE_SER%3B 1.	gene	gene1263	http://www.ncbi.nlm.nih.gov/gene/?term=azo1237
azo1238	azo1238		azo1238	1332713	1334038	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA2217 of Azoarcus sp. EbN1 of 32%25 (gnl|keqq|eba:ebA2217(KEGG)). C-terminus is not homolog to COG0644. signal peptide present. no TMHS.%3B~Conserved hypothetical protein	gene	gene1264	http://www.ncbi.nlm.nih.gov/gene/?term=azo1238
azo1239	azo1239	qhpA	qhpA	1334490	1336076	+	probable quinohemoprotein amine dehydrogenase%2Calpha subunit	Probable quinohemoprotein amine dehydrogenase%2Calpha subunit. Homology to qhpA of P.putida of 50%25 (gi|18655859|pdb|1JMZ|A(PDB (RCSB))). Quinoproteins are a class of amine-oxidising enzymes that catalyse the oxidation of biological amines%2C using quinone as a redox cofactor to store reducing equivalents. Quinohemoprotein amine dehydrogenase (QH-AmDH) from bacteria represents a new class of quinoproteins that contains both quinone and one or two hemes as redox active groups. The presence of extra redox active groups allows for intramolecular electron transfer. QH-AmDH is a heterotrimeric enzyme containing alpha%2C beta and gamma chains encoded by separate genes. The alpha chain makes contact with both the beta and gamma chains. The small gamma chain forms three intra-chain cross-links via thioester bonds between cysteine and aspartic or glutamic acid residues%2C thereby encaging the cysteine tryptophylquinone cofactor. The largest chain%2C alpha%2C contains two heme c groups. The alpha chain is folded into four domains%2C domain 1 forming a diheme cytochrome. Domains 2%2C 3 and 4 are antiparallel beta-barrel structures. Has PF00034%2C Cytochromes c (cytC). Interpro (IPR009111) Quinohemoprotein amine dehydrogenase%2C alpha chain%2C domain 3. Signal peptide present. No TMHs.%3B~High confidence in function and specificity	gene	gene1265	http://www.ncbi.nlm.nih.gov/gene/?term=azo1239
azo1240	azo1240	qhpX	qhpX	1336144	1337574	+	conserved hypothetical qinohemoprotein amine dehydrogenase%2C unknown subunit	Conserved hypothetical qinohemoprotein amine dehydrogenase%2C unknown subunit. Homology to P. putida of 71%25 (gi|16950513|dbj|BAB72009.1|(NBCI ENTREZ)). InterPro:IPR000385%3B MoaA_NifB_PqqE. IPR007197%3B Radical_SAM. Pfam:PF04055%3B Radical_SAM. No signal peptide. No TMHs%3B~Family membership	gene	gene1266	http://www.ncbi.nlm.nih.gov/gene/?term=azo1240
azo1241	azo1241	qhpC	qhpC	1337576	1337902	+	probable quinohemoprotein amine dehydrogenase%2Cgamma subunit	Probable quinohemoprotein amine dehydrogenase%2Cgamma subunit. Homology to qhnDH of P. putida of 54%25 (sprot|QADG_PSEPK(SRS). Quinoproteins are a class of amine-oxidising enzymes that catalyse the oxidation of biological amines%2C using quinone as a redox cofactor to store reducing equivalents. Quinohemoprotein amine dehydrogenase (QH-AmDH) from bacteria represents a new class of quinoproteins that contains both quinone and one or two hemes as redox active groups. The presence of extra redox active groups allows for intramolecular electron transfer. QH-AmDH is a heterotrimeric enzyme containing alpha%2C beta and gamma chains encoded by separate genes. The alpha chain makes contact with both the beta and gamma chains. The small gamma chain forms three intra-chain cross-links via thioester bonds between cysteine and aspartic or glutamic acid residues%2C thereby encaging the cysteine tryptophylquinone cofactor. The largest chain%2Calpha%2C contains two heme c groups. The alpha chain is folded into four domains%2C domain 1 forming a diheme cytochrome. Domains 2%2C 3 and 4 are antiparallel beta-barrel structures. no domains predicted. no signal peptide. no TMHs%3B~High confidence in function and specificity	gene	gene1267	http://www.ncbi.nlm.nih.gov/gene/?term=azo1241
azo1242	azo1242	qhpB	qhpB	1337920	1339065	+	probable quinohemoprotein amine dehydrogease%2Cbeta subunit	Probable quinohemoprotein amine dehydrogenase%2Calpha subunit. Homology to qhpB of P.putida of 50%25 (gi|34809688|pdb|1PBY|B(PDB (RCSB))). Quinoproteins are a class of amine-oxidising enzymes that catalyse the oxidation of biological amines%2C using quinone as a redox cofactor to store reducing equivalents. Quinohemoprotein amine dehydrogenase (QH-AmDH) from bacteria represents a new class of quinoproteins that contains both quinone and one or two hemes as redox active groups. The presence of extra redox active groups allows for intramolecular electron transfer. QH-AmDH is a heterotrimeric enzyme containing alpha%2C beta and gamma chains encoded by separate genes. The alpha chain makes contact with both the beta and gamma chains. The small gamma chain forms three intra-chain cross-links via thioester bonds between cysteine and aspartic or glutamic acid residues%2C thereby encaging the cysteine tryptophylquinone cofactor. The largest chain%2C alpha%2C contains two heme c groups. The alpha chain is folded into four domains%2C domain 1 forming a diheme cytochrome. Domains 2%2C 3 and 4 are antiparallel beta-barrel structures. Interpro (IPR0011044) Quinoprotein amine dehydrogenase%2C beta chain-like. Signal peptide present. No TMHs.%2C%3B~High confidence in function and specificity	gene	gene1268	http://www.ncbi.nlm.nih.gov/gene/?term=azo1242
azo1243	azo1243		azo1243	1339138	1340523	-	conserved hypothetical N-acetylmuramoyl-L-alanine amidase	Conserved hypothetical N-acetylmuramoyl-L-alanine amidase. Homology to amiC of R. solanaceraum of 50%25 (trembl|Q8XWD5) CELL-WALL HYDROLASE PROBABLY INVOLVED IN CELL-WALL HYDROLYSIS SEPTATION OR RECYCLING (BY SIMILARITY). Pfam: N-acetylmuramoyl-L-alanine amidase no signal peptide no TMHs%3B~Family membership	gene	gene1269	http://www.ncbi.nlm.nih.gov/gene/?term=azo1243
azo1244	azo1244		azo1244	1340466	1340987	-	conserved hypothetical protein	Conserved hypothetical protein having uncharacterised P-loop hydrolase%2C 47%25 Identity to TrEMBL%3BQ82WL4%2CQ63WN1. Has PF02367%2C Uncharacterised P-loop hydrolase UPF0079%3BIPR003442%3B This signature is found in a family of bacterial proteins%2C which contain a P-loop.	gene	gene1270	http://www.ncbi.nlm.nih.gov/gene/?term=azo1244
azo1245	azo1245		azo1245	1341000	1342058	+	conserved hypothetical electron transport protein	Conserved hypothetical electron transport protein. Homology to pa4950 of P. aeruginosa of 63%25 (trembl|Q9HUL4). Pfam: 4Fe-4S- binding domain Tigrfam: TIG00276: iron-sulfur cluster binding protein%2C putative no TMHs no signal peptide TIGR00276: iron-sulfur cluster binding pr%3B~Conserved hypothetical protein	gene	gene1271	http://www.ncbi.nlm.nih.gov/gene/?term=azo1245
azo1246	azo1246		azo1246	1342145	1343311	-	conserved hypothetical mandelate racemase	Conserved hypothetical mandelate racemase. Homology to bll6730 of B. japonicum of 76%25 (trembl|Q89FH0) Mandelate racemase and muconate lactonizing enzyme are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary%2C quaternary (homooctamer) and tertiary structures. InterPro: Mandelate racemase/muconate lactonizing enzyme family (IPR001354) Pfam: Mandelate racemase/muconate lactonizing enzyme%2C N-terminal domain%3B Mandelate racemase/muconate lactonizing enzyme%2C C-terminal domain%3B~Specificity unclear	gene	gene1272	http://www.ncbi.nlm.nih.gov/gene/?term=azo1246
azo1247	azo1247		azo1247	1343604	1344530	+	putative transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 29%25 1 helixturnhelix PF03466 LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~Specificity unclear	gene	gene1273	http://www.ncbi.nlm.nih.gov/gene/?term=azo1247
azo1248	azo1248	nifY2	nifY2	1344671	1345414	+	NifY protein	NifY-like protein. Homology to Daro03003760 of Dechloromonas aromatica of 65%25 (gi|46140358|ref|ZP_00203574.1|(NBCI ENTREZ)). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B%2C Y and X) proteins which are involved in the synthesis of an iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide predicted. No TMHs.%3B~Family membership	gene	gene1274	http://www.ncbi.nlm.nih.gov/gene/?term=azo1248
azo1249	azo1249		azo1249	1345528	1345794	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No signal peptide No TMHs	gene	gene1275	http://www.ncbi.nlm.nih.gov/gene/?term=azo1249
azo1250	azo1250		azo1250	1345875	1346084	+	Conserved Hypotheitcal protein	Conserved Hypotheitcal protein. Very strong consideration to be a homolog for SlyX protein. TrEMBL: Q7WMX4%2C 32%25 identity. Has PF04102|SlyX%3B(IPR007236):The SlyX protein has no known function. It is short less than 80 amino acids and is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C-terminus. The protein may be a coiled-coil structure. No Signal peptide present. No TMH present.%3B~Family membership	gene	gene1276	http://www.ncbi.nlm.nih.gov/gene/?term=azo1250
azo1251	azo1251		azo1251	1346107	1348047	-	conserved hypothetical peptidase	Conserved hypothetical peptidase. Homology to cv0266 of C. violaceum of 58%25 (cvi:CV0266). InterPro: Peptidase family U32 Pfam: Peptidase family U32 no signal peptide no TMHs%3B~Family membership	gene	gene1277	http://www.ncbi.nlm.nih.gov/gene/?term=azo1251
azo1252	azo1252		azo1252	1348202	1348510	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to XCC3430 of Xanthomonas campestris of 38%25 (trembl:Q8P5B1). Has PF04892%2C VanZ like family%3BIPR006976 %3B This family contains several examples of the VanZ protein%2Cbut also contains examples of phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors%2C accumulated in the presence of ramoplanin%2C showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors. no signal peptide. 2 TMHs.%3B~Conserved hypothetical protein	gene	gene1278	http://www.ncbi.nlm.nih.gov/gene/?term=azo1252
azo1253	azo1253		azo1253	1348736	1349905	+	conserved hypothetical protein	Similar to the GdhB protein%2C a putative glucose dehydrogenase-B%2C periplasmic protein [EC:1.1.5.2]%2C from Synechocystis. SPTR: P73001. Signal peptide:present	gene	gene1279	http://www.ncbi.nlm.nih.gov/gene/?term=azo1253
azo1254	azo1254		azo1254	1349902	1351638	-	conserved hypothetical signaling protein	Conserved hypothetical signaling protein. Homology to Bcep02001865 of Burkholderia fungorum of 44%25 (gi|48787085|ref|ZP_00283167.1|(NBCI ENTREZ)). InterPro: IPR003660 HAMP. IPR000160 GGDEF. Pfam: PF00672 HAMP. PF00990 GGDEF domain. TIGRFAM:TIGR00254 putative diguanylate cyclase (GGDEF) domain. Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices (in signal peptide).%3B~Conserved hypothetical protein	gene	gene1280	http://www.ncbi.nlm.nih.gov/gene/?term=azo1254
azo1255	azo1255	potD	potD	1351635	1352795	-	bacterial extracellular solute-binding protein	Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. Similar to trembl|Q986V8 (37%25). Pfam (PF01547): Bacterial extracellular solute-binding protein%3B~Family membership	gene	gene1281	http://www.ncbi.nlm.nih.gov/gene/?term=azo1255
azo1256	azo1256		azo1256	1352950	1355322	+	putative serine/threonine protein kinase	Putative serin/threonine protein kinase%2C only very low similarity to SWISSPROT: sprot|PKSC_STRCO (13%25 Streptomyces coelicolor%2C serine/threonine protein kinase PksC (EC 2.7.11.1)) / TREMBL: trembl|Q9S478 (13%25 Myxococcus xanthus%2C Pkn4). Pfam: PF00069 Pkinase. SMART:SM00221 STYKc (Protein kinase%3B unclassified specificity). SM00065 GAF (Domain present in phytochromes and cGMP-specific phosphodiesterases).%3B~Family membership	gene	gene1282	http://www.ncbi.nlm.nih.gov/gene/?term=azo1256
azo1257	azo1257		azo1257	1355479	1356123	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV1784 of C.violaceum of 40%25 (tremble:Q7NX45). No domains predicted. No TMHs. No signal peptide.	gene	gene1283	http://www.ncbi.nlm.nih.gov/gene/?term=azo1257
azo1258	azo1258		azo1258	1356239	1358347	+	hypothetical membrane protein	hypothetical membrane protein no homology to entire proteins seven transmembrane domains predicted%2C no signal peptide predicted%3B~Family membership	gene	gene1284	http://www.ncbi.nlm.nih.gov/gene/?term=azo1258
azo1259	azo1259	pepD	pepD	1358370	1359830	+	probable aminoacyl-histidine dipeptidase	Probable aminoacyl-histidine dipeptidase (EC 3.4.13.3) (Xaa-His dipeptidase) (X-His dipeptidase) (Beta-alanyl-histidine dipeptidase) (Carnosinase) (Peptidase D). Homology to pepD of E. coli of 44%25. THIS DIPEPTIDASE HAS SPECIFICITY FOR THE UNUSUAL DIPEPTIDE BETA-ALANYL-L-HISTIDINE. InterPro: Peptidase family M20/M25/M40 (IPR002933) Pfam: Peptidase family M20/M25/M40 no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1285	http://www.ncbi.nlm.nih.gov/gene/?term=azo1259
azo1260	azo1260		azo1260	1359827	1360354	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RPA1575 of R.palustris of 41%25 (tremble:Q6N9H4). Has PF04536:(IPR007621)Domain of unknown function (DUF477)%3BThis is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. No TMHs. No signal peptide.	gene	gene1286	http://www.ncbi.nlm.nih.gov/gene/?term=azo1260
azo1261	azo1261		azo1261	1360403	1361335	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Bll7266 of B. japonicum of 45%25 (trembel:Q89E21) InterPro:IPR007621%3B DUF477. Pfam:PF04536%3B DUF477 Signal peptide present (Signal P predicted). Presence of 2 transmembrane helices.%3B~Conserved hypothetical protein	gene	gene1287	http://www.ncbi.nlm.nih.gov/gene/?term=azo1261
azo1262	azo1262	lemA1	lemA1	1361353	1361979	-	conserved hypothetical LemA family protein	Putative lipoprotein [lemA]%2C57 %25 identity (75%25 similarity) to TrEMBL%3BQ72TG3%2CTrEMBL%3BQ6N9H6(60%25 identity). No signl peptide or TMH present. Has PF04011:LemA family(IPR007156%2ClemA)%3BThe members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular [1]. The exact molecular function of this protein is uncertain.%3B~Conserved hypothetical protein	gene	gene1288	http://www.ncbi.nlm.nih.gov/gene/?term=azo1262
azo1263	azo1263		azo1263	1362162	1362374	+	conserved hypothetical protein	Conserved yhpothetical protein. Homology to BP1565 of B.pertussis of 66%25 (tremble:Q7VY02) Has PF07311:Protein of unknown function (DUF1458)(IPR009923 )%3BThis family consists of several hypothetical bacterial proteins as well as one archaeal sequence Q9HPW4. Members of this family are typically of around 70 residues in length. The function of this family is unknown. No signal peptide or TMH present.	gene	gene1289	http://www.ncbi.nlm.nih.gov/gene/?term=azo1263
azo1264	azo1264		azo1264	1362410	1363681	+	putative transmembrane sensor protein	Putative transmembrane sensor protein%2C no similarity to other bacterial proteins. Best hits to mus musculus and homo sapiens. Domains (LCCL_dom and TIR) are found in proteins (animal and plants) involved in protection against bacterial infection. InterPro: IPR004043 LCCL_dom. IPR000157 TIR. TMHMM reporting 1 transmembrane helices.	gene	gene1290	http://www.ncbi.nlm.nih.gov/gene/?term=azo1264
azo1265	azo1265		azo1265	1363688	1363981	-	Hypothetical protein	Hypothetical protein%2C 26%25 identity(49%25 similarity) to TrEMBL%3BQ8XT66. TrEMBL%3BQ7P1L8(34%25 identity). No domains%2Crepeats%2C motifs or features present.	gene	gene1291	http://www.ncbi.nlm.nih.gov/gene/?term=azo1265
azo1266	azo1266	dnaJ2	dnaJ2	1364049	1365062	-	putative chaperone protein DnaJ	Putative chaperone protein dnaJ. homology to dnaJ of E. coli of 32%25 (sprot|DNAJ_ECOLI) Acts as a co-chaperone. Stimulates jointly with grpE the ATPase activity of dnaK (By similarity). Pfam: DnaJ domain%2C DnaJ central domain (4 repeats)%2C DnaJ Cterminal region no singal peptide no TMHs%3B~Family membership	gene	gene1292	http://www.ncbi.nlm.nih.gov/gene/?term=azo1266
azo1267	azo1267		azo1267	1365220	1365705	+	probable acyl-CoA thioester hydrolase	Entry name TREMBL:Q7W380 Prim. accession # Q7W380 Identities %3D 111/150 (74%25) InterPro IPR006683%3B Thioestr_supf. Pfam PF03061%3B 4HBT%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.179 Number of predicted TMHs: 0%3B~Family membership	gene	gene1293	http://www.ncbi.nlm.nih.gov/gene/?term=azo1267
azo1268	azo1268		azo1268	1365702	1365947	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to PBPRB0126 of Photobacterium profundum of 54%25 (trembl:Q6LL06). No domains predicted. No TMHs. No signal peptide.	gene	gene1294	http://www.ncbi.nlm.nih.gov/gene/?term=azo1268
azo1269	azo1269	purT	purT	1365959	1367140	-	phosphoribosylglycinamide formyltransferase 2	Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase)%3B~High confidence in function and specificity	gene	gene1295	http://www.ncbi.nlm.nih.gov/gene/?term=azo1269
azo1270	azo1270		azo1270	1367335	1368981	+	conserved hypothetical protein	Probable Branched-chain amino acid aminotransferase (EC 2.6.1.42) (Transaminase B) (BCAT). thrC: threonine synthase.%3B~Function unclear	gene	gene1296	http://www.ncbi.nlm.nih.gov/gene/?term=azo1270
azo1271	azo1271		azo1271	1368995	1369639	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to pa3214 of P. aeruginosa of 52%25 (trembl|Q9HZ26). Pfam: DUF330 signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1297	http://www.ncbi.nlm.nih.gov/gene/?term=azo1271
azo1272	azo1272		azo1272	1369636	1370577	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Similar to TREMBL:Q9HZ27 (53%25 identity)%3B TREMBL:Q88RI9 (46%25 identity)%3B TREMBL:Q8PGP4 (33%25 identity). Pfam (PF02470): mce related protein. SignalP reporting signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene1298	http://www.ncbi.nlm.nih.gov/gene/?term=azo1272
azo1273	azo1273		azo1273	1370579	1371361	-	putative ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8PGP5 (60%25 identity)%3B TREMBL:Q9PDS7 (57%25 identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Specificity unclear	gene	gene1299	http://www.ncbi.nlm.nih.gov/gene/?term=azo1273
azo1274	azo1274		azo1274	1371358	1372500	-	putative ABC transporter permease protein	TREMBL:Q88RI7 (56%25 identity)%3B TREMBL:Q8PGP6 (42%25 identity). Pfam (PF02405): Domain of unknown function DUF140. TIGRFAM (TIGR00056): Conserved hypothetical protein. TMHMM reporting six transmembrane helices.%3B~Specificity unclear	gene	gene1300	http://www.ncbi.nlm.nih.gov/gene/?term=azo1274
azo1275	azo1275	yjjK	yjjK	1372520	1374184	-	probable ABC transporter%2C ATP-binding protein	ABC transporter ATP-binding protein yjjK. Presence of typical NB-ARC%2C KH%2C FolB and GAD domains. Occurence of Hydrolase like P-loop and C terminal alpha/beta chains like ATP synthease. Presence of Signal peptide and TM helices.85%25 identity and 92%25 similarity to Dechloromonas aromatica.ATPase of ABC transporter with duplicated ATPase domain. InterPro: AAA ATPase superfamily uvra: excinuclease ABC A subunit%3B~Family membership	gene	gene1301	http://www.ncbi.nlm.nih.gov/gene/?term=azo1275
azo1276	azo1276		azo1276	1374585	1375484	+	putative O-methyltransferase	Putative methyltransferase Rv0089/MT0098/Mb0092 (EC 2.1.1.-). Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen%2C oxygen or carbon atoms is frequently employed in diverse organisms TREMBL:AAS95087-36%25identity%2C50%25 similarity InterPro: SAM (and some other nucleotide) binding motif rrmJ: ribosomal RNA large subunit methylation TIGRFAM:Transcription regulator%2C AsR family%2C Ubi/COQ family.%3B~Family membership	gene	gene1302	http://www.ncbi.nlm.nih.gov/gene/?term=azo1276
azo1277	azo1277		azo1277	1375505	1375996	-	conserved hypothetical glutathione peroxidase	conserved hypothetical glutathione peroxidase. Homolgy to pp1874 pf P. putida of 66%25 (trembl|Q88LQ5) Glutathione peroxidase (GSHPx)%2C an enzyme whose principal function is to protect against damage from endogenously-formed hydroxyperoxides%2C catalyses the reduction of hydroxyperoxides by glutathione Pfam: Glutatione peroxidase no signal peptide no TMHs%3B~Family membership	gene	gene1303	http://www.ncbi.nlm.nih.gov/gene/?term=azo1277
azo1278	azo1278		azo1278	1376095	1378737	-	EAL/GGDEF/PAS/PAC-domain containing signalling protein	EAL/GGDEF/PAS/PAC-domain containing signalling protein%2C%3B~Conserved hypothetical protein	gene	gene1304	http://www.ncbi.nlm.nih.gov/gene/?term=azo1278
azo1279	azo1279		azo1279	1378734	1379822	-	putative cytochrome C peroxidase	Probable cytochrome c peroxidase (EC 1.11.1.5)%2C an electron-transfer proteins having one or several haem c groups%2C bound to the protein by one or%2C more generally%2Ctwo thioether bonds involving sulphydryl groups of cysteine residues. CytC possess a wide range of properties and function in a large number of different redox processes. Similar to yhjA from E.coli.%3B~High confidence in function and specificity	gene	gene1305	http://www.ncbi.nlm.nih.gov/gene/?term=azo1279
azo1280	azo1280	fpr1	fpr1	1379865	1380641	-	ferredoxin-NADP+ reductase	Ferredoxin-NADP+ reductase (EC 1.18.1.2) Homology to fpr of A. vinelandii of 79%25 (sprot|FENR_AZOVI). CATALYTIC ACTIVITY: Reduced ferredoxin + NADP(+) %3D oxidized ferredoxin + NADPH. Pfam: Oxidoreductase FAD-binding doamin%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1306	http://www.ncbi.nlm.nih.gov/gene/?term=azo1280
azo1281	azo1281		azo1281	1380741	1381667	+	probable transcriptional regulator%2C LysR family	Probable transcriptional regulator%2C LysR family proteins.57%25 Identity to TrEMBL%3BQ9HYK6%2C Q87XZ5%2C Q88MD6. Has PF03466%2C LysR substrate binding domain%3BIPR005119%2CLysR_subst%3B The structure of this domain is known and is IPR000847%2C HTH_LysR%3B Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse%2C but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family%2C the lysR family%2Cgroups together a range of proteins%2C including ampR%2C catM%2CcatR%2C cynR%2C cysB%2C gltC%2C iciA%2C ilvY%2C irgB%2C lysR%2C metR%2CmkaC%2C mleR%2C nahR%2C nhaR%2C nodD%2C nolR%2C oxyR%2C pssR%2C rbcR%2CsyrM%2C tcbR%2C tfdS and trpI. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.%3B~High confidence in function and specificity	gene	gene1307	http://www.ncbi.nlm.nih.gov/gene/?term=azo1281
azo1282	azo1282	ndvB	ndvB	1381825	1384443	-	putative Beta-(1-3)-glucosyl transferase	Beta-(1-3)-glucosyl transferase%2C involved in the synthesis of the cyclic beta-(1%2C3)%2C(1%2C6)-D-glucan. 36%25 Glyco_trans_2. Pfam:PF00535%3B Glycos_transf_2. Signal peptide: present. TMhelix:9.%3B~Function unclear	gene	gene1308	http://www.ncbi.nlm.nih.gov/gene/?term=azo1282
azo1283	azo1283		azo1283	1384729	1385121	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PP1739 of P. putida of 30%25 (trembl|Q8EA80) No domains predicted. signal peptide 2 TMHs%3B~Conserved hypothetical protein	gene	gene1309	http://www.ncbi.nlm.nih.gov/gene/?term=azo1283
azo1284	azo1284	ndvC	ndvC	1385065	1386660	-	putative glucan 1%2C3-beta-glucosidase	Glucan 1-3-beta-glucosidase precursor.(Exo-13-beta-glucanase).Glucanases possibly play a role in cell expansion during growth in cell-cell fusion during mating and in spore release during sporulation. This enzyme may be involved in beta- glucan degradation and also function biosynthetically as a transglycosylase. 47%25%3B~Function unclear	gene	gene1310	http://www.ncbi.nlm.nih.gov/gene/?term=azo1284
azo1285	azo1285	gcvP	gcvP	1386740	1389619	-	glycine cleavage system P-protein	Glycine cleavage system P-protein. Homology to gcvP of E. coli of 63%25 (CAA52146). The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor%3B CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (By similarity). Tigrfam: gcvP: glycine cleavage system P protein Interpro: glycine cleavage system P protein (IPR003437) Pfam: glycine cleavage system P protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1311	http://www.ncbi.nlm.nih.gov/gene/?term=azo1285
azo1286	azo1286	gcvH	gcvH	1389681	1390064	-	glycine cleavage system H protein [gcvH]	Glycine cleavage system H protein [gcvH]%2C 70%25 identity to SProt%3BQ8XU99%2C Q82WQ5. TrEMBL%3BQ62FN0(67%25 Identity). Has PF01597%2C Glycine cleavage H-protein%3B IPR002930%2C GCV_H%3B This is a family of glycine cleavage H-proteins%2C part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	gene	gene1312	http://www.ncbi.nlm.nih.gov/gene/?term=azo1286
azo1287	azo1287	gcvT	gcvT	1390115	1391122	-	glycine cleavage system T protein	Glycine cleavage T proteins are part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. The T-protein is an aminomethyl transferase that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein %3D (6R)-5%2C10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein Similar to sprot|GCST_NITEU (60%25). Pfam: Glycine cleavage T-protein (aminomethyltransferase) TIGRfam (TIGR00528): Glycine cleavage T-protein (aminomethyl transferase)%3B~High confidence in function and specificity	gene	gene1313	http://www.ncbi.nlm.nih.gov/gene/?term=azo1287
azo1288	azo1288	narK	narK	1397768	1398982	+	putative nitrate transporter	Probable nitrate transporters are involved in excretion of nitrite produced by the dissimilatory reduction of nitrate. NarK is polytopic membrane protein with 12 transmembrane domains which is involved in nitrate uptake and nitrite excretion and is thought to function as a nitrate/nitrite antiporter. At low concentrations of nitrate%2C NarK mediates the electrogenic excretion of nitrite rather than nitrate/nitrite exchange.%2C 90%25 similarity to a probable nitrate transporter protein in Azoarcus sp. EbN1.%2C InterPRo:04737: nitrate transporter%2CSignal peptide no present%2C TMHx:12 %2C%3B~High confidence in function and specificity	gene	gene1318	http://www.ncbi.nlm.nih.gov/gene/?term=azo1288
azo1289	azo1289		azo1289	1399088	1400770	+	putative serine/threonine protein kinase	Putative serine/threonine protein kinase%2C%3B~Family membership	gene	gene1319	http://www.ncbi.nlm.nih.gov/gene/?term=azo1289
azo1290	azo1290		azo1290	1400786	1401718	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA98 of Azoarcus sp. EbN1 of 67%25 (gnl|keqq|eba:ebA983(KEGG)). No domains predicted. No signal peptide. No TMHs	gene	gene1320	http://www.ncbi.nlm.nih.gov/gene/?term=azo1290
azo1291	azo1291	sixA	sixA	1401860	1402312	-	putative phosphohistidine phosphatase	Putative phosphohistidine phosphatase%2C SixA. TIGRFAM: TIGR00249%3B sixA. Phosphohistidine phosphatase sixA (EC 3.1.3.-) (RX6). EXHIBITS PHOSPHOHISTIDINE PHOSPHATASE ACTIVITY TOWARDS THE HPT DOMAIN OF THE ARCB SENSOR INVOLVED IN THE MULTISTEP HIS- ASP PHOSPHORELAY.%3B~Specificity unclear	gene	gene1321	http://www.ncbi.nlm.nih.gov/gene/?term=azo1291
azo1292	azo1292		azo1292	1402375	1403868	-	adenylate cyclase	Conserved hypothetical protein%2C40%25 identity to TrEMBL%3BQ88AR4 Has PF01928|CYTH domain(IPR008172)%3BThese sequences are functionally identified as members of the adenylate cyclase family%2C which catalyses the conversion of ATP to 3'%2C5'-cyclic AMP and pyrophosphate. Has PF05235:CHAD domain(IPR007899)%3BThe CHAD domain is an alpha-helical domain functionally associated with the CYTH domains. It has conserved histidines that may chelate metals.	gene	gene1322	http://www.ncbi.nlm.nih.gov/gene/?term=azo1292
azo1293	azo1293	glnE	glnE	1403946	1406627	-	probable [glutamate-ammonia-ligase] adenylyltransferase	Probable glutamate-ammonia-ligase adenylyltransferase (glutamine-synthetase adenylyltransferase) protein%2C%3B~High confidence in function and specificity	gene	gene1323	http://www.ncbi.nlm.nih.gov/gene/?term=azo1293
azo1294	azo1294		azo1294	1406776	1410699	+	conserved hypothetical membrane protein	Conserved hypothetical protein. Homology to cv2096 of C. violaceum of 32%25 (trembl|Q7NW94(SRS) no domains predicted no signal peptide 1 TMHs	gene	gene1324	http://www.ncbi.nlm.nih.gov/gene/?term=azo1294
azo1295	azo1295		azo1295	1410696	1411553	+	conserved hypothetical carbon-nitrogen hydrolase	conserved hypothetical carbon-nitrogen hydrolase. Homolog to bb1933 of B. bronchiseptica (trembl|Q7WL17). InterPro: Carbon-nitrogen hydrolase (IPR003010) Pfam: Carbon-nitorgen hydrolase no signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1325	http://www.ncbi.nlm.nih.gov/gene/?term=azo1295
azo1296	azo1296	tldD	tldD	1411624	1413069	+	probable TldD protein	Probable TldD protein. Homology to tldD of E. coli of 59%25 (sprot|TLDD_ECOLI). Suppresses the inhibitory activity of the carbon storage regulator (csrA). Pfam: putative modulator of DNA gyrase no signal peptide no TMHs%3B~Function unclear	gene	gene1326	http://www.ncbi.nlm.nih.gov/gene/?term=azo1296
azo1297	azo1297		azo1297	1413077	1413520	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3985 of C.violaceum of 42%25 (tremble:Q7NR00). Has PF07025:(IPR010745)Protein of unknown function (DUF1316)%3BThis family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. No signal peptide or TMH present.	gene	gene1327	http://www.ncbi.nlm.nih.gov/gene/?term=azo1297
azo1298	azo1298		azo1298	1413533	1414231	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to cv3984 of C. violaceum of 47%25 (trembl|Q7NR01(SRS)) no domains predicted no signal peptide 1 TMH%3B~Conserved hypothetical protein	gene	gene1328	http://www.ncbi.nlm.nih.gov/gene/?term=azo1298
azo1299	azo1299		azo1299	1414245	1415591	-	conserved hypothetical protein	Hypothetical protein%2C50%25 identity (67%25 similarity)to TrEMBL%3BQ7NR02. TrEMBL%3BQ88IA6(39%25)%2CQ8XRU1(37%25). Has PF05936(IPR010263):Bacterial protein of unknown function (DUF876)%3BThis family consists of a series of hypothetical bacterial sequences of unknown function. No Signal Peptide or TMH reported present.%3B~Function unclear	gene	gene1329	http://www.ncbi.nlm.nih.gov/gene/?term=azo1299
azo1300	azo1300		azo1300	1415603	1416217	-	Hypothetical protein	Hypothetical protein%2C34%25 identity (52%25 similarity) to TrEMBL%3BQ7NR03. No domains%2C repeats%2C motifs or features were predicted with confidence.%3B~Function unclear	gene	gene1330	http://www.ncbi.nlm.nih.gov/gene/?term=azo1300
azo1301	azo1301		azo1301	1416388	1417059	+	hypothetical membrane protein	Hypothetical membrane protein. No homology of the entire protein with the data bank. Pfam: D-alanyl-D-alanine carboxypeptidase (101-209 aa) no signal peptide 1 TMHs	gene	gene1331	http://www.ncbi.nlm.nih.gov/gene/?term=azo1301
azo1302	azo1302		azo1302	1417056	1420748	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV3712 of Chromobacterium violaceum of 35%25 (trembl|Q7NR05) Signal P reporting Signal Peptide Present. TMHMM2 reporting 2 TMH's present. Has PF06761:(IPR009612)ImcF-related%3BThis family represents a conserved region within several bacterial proteins that resemble ImcF%2C which has been proposed [1] to be involved in Vibrio cholerae cell surface reorganisation%2C resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many family members are hypothetical proteins. Has PF06744%2C(IPR010623)Protein of unknown function (DUF1215)%3BThis family represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein%2C which has been proposed to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.%3B~Conserved hypothetical protein	gene	gene1332	http://www.ncbi.nlm.nih.gov/gene/?term=azo1302
azo1303	azo1303		azo1303	1420836	1421360	+	conserved hypothetical protein	Hypothetical protein%2C50%25 identity (66%25 Similarity) to TrEMBL%3BQ8XRT8. TrEMBL%3BQ7NR06(60%25 identity%2C74%25 similarity). Has PF05591%3BProtein of unknown function (DUF770)(IPR008312)This family consists of several proteins of unknown function from various bacterial species. No Signal peptide or TMH present.%3B~Function unclear	gene	gene1333	http://www.ncbi.nlm.nih.gov/gene/?term=azo1303
azo1304	azo1304		azo1304	1421344	1422837	+	conserved hypothetical protein	Hypothetical protein%2C63%25 identity (81%25 similarity) to TrEMBL%3BQ8XRT7. TrEMBL%3BQ7NR07(73%25 identity%2C86%25 similarity). Has (IPR010269 )PF05943:Protein of unknown function (DUF877)%3BThis family consists of a number of uncharacterised bacterial proteins. The function of this family is unknown. No Signal peptide or TMH present.%3B~Function unclear	gene	gene1334	http://www.ncbi.nlm.nih.gov/gene/?term=azo1304
azo1305	azo1305		azo1305	1422881	1423378	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3977 of C.violaceum of 77%25 (tremble:Q7NR08). Has PF05638:(IPR008514)Protein of unknown function (DUF796)%3BThis family consists of several bacterial proteins of unknown function. No signal peptide or TMH present.	gene	gene1335	http://www.ncbi.nlm.nih.gov/gene/?term=azo1305
azo1306	azo1306		azo1306	1423378	1423854	+	hypothetical secreted protein	Hypothetical secreted protein. Homology to CV3976 of Chromobacterium violaceum of 26%25 (trembl|Q7NR09(SRS)). No TMHs Signal Peptide Present. Has PF00691:OmpA family%3B(IPR006665 OmpA/MotB):The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.	gene	gene1336	http://www.ncbi.nlm.nih.gov/gene/?term=azo1306
azo1307	azo1307		azo1307	1423911	1426628	+	probable vgr related protein	Probable vgr-related protein%2C41%25 identity (55%25 similarity) to TrEMBL%3BQ7NY43. TrEMBL%3BQ8XSF8 Has (IPR006533 Rhs_Vgr)PF04524:Protein of unknown function%2C DUF586%3BThis family contains a conserved region in several bacterial proteins of unknown function. Coils2 program predicts presence of a coiled coil.	gene	gene1337	http://www.ncbi.nlm.nih.gov/gene/?term=azo1307
azo1308	azo1308		azo1308	1426635	1428473	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3969 of C.violaceum of 56%25 (tremble: Q7NR16). Has (IPR010272)PF05947:Bacterial protein of unknown function (DUF879)%3BThis family consists of several hypothetical bacterial proteins of unknown function. No signal peptide or TMH present.	gene	gene1338	http://www.ncbi.nlm.nih.gov/gene/?term=azo1308
azo1309	azo1309		azo1309	1428437	1429453	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3967 of C.violaceum of 45%25 (tremble:Q7NR18) Has (IPR010732)PF06996:Protein of unknown function (DUF1305)%3BThis family consists of several hypothetical bacterial proteins of around 300 residues in length. The function of this family is unknown although one member (Q93IT4) from Salmonella enterica is thought to be involved in virulence. No signal peptide or TMH reported present.	gene	gene1339	http://www.ncbi.nlm.nih.gov/gene/?term=azo1309
azo1310	azo1310		azo1310	1429450	1430565	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3963 of C.violaceum of 37%25 (tremble:Q7NR22). Has (IPR01065)PF06812:ImpA-related N-terminal%3BThis family represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein%2C which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans. Note that many family members are hypothetical proteins. No signal peptide present. No TMH present.	gene	gene1340	http://www.ncbi.nlm.nih.gov/gene/?term=azo1310
azo1311	azo1311		azo1311	1430572	1430835	-	conserved hypothetical protein	conserved hypothetical protein Has 2 PF05488 PAAR motif(IPR008727)%3BThis motif is found usually in pairs in a family of bacterial membrane proteins. It is also found as a triplet of tandem repeats comprising the entire length in a another family of hypothetical proteins.%3B~Function unclear	gene	gene1341	http://www.ncbi.nlm.nih.gov/gene/?term=azo1311
azo1312	azo1312		azo1312	1431039	1432133	+	tRNA (uracil-5-)-methyltransferase	tRNA (Uracil-5-)-methyltransferase (EC 2.1.1.35) (tRNA(M-5-U54)- methyltransferase) (RUMT). Catalyzes the formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNA.%3B~Family membership	gene	gene1342	http://www.ncbi.nlm.nih.gov/gene/?term=azo1312
azo1313	azo1313	phnA	phnA	1432168	1432506	+	putative phosphonoacetate hydrolase protein	PhnA protein: Phosphonoacetate hydrolase is a novel carbon-phosphorus bond cleavage enzyme.The phnA gene is part of a large operon in Escherichia coli associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. PhnA is found in both gram positive 69%25 PhnA.PhnA protein Pfam:PF03831%3B PhnA%3B 1. TIGRFAMs:TIGR00686%3B phnA%3B 1.%3B~High confidence in function and specificity	gene	gene1343	http://www.ncbi.nlm.nih.gov/gene/?term=azo1313
azo1314	azo1314		azo1314	1432522	1432893	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA3072 Azoarcus sp. EbN1 of 61%25 (gnl|keqq|eba:ebA3072(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene1344	http://www.ncbi.nlm.nih.gov/gene/?term=azo1314
azo1315	azo1315		azo1315	1432952	1433749	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to blr8071 of B. japonicum of 56%25 (trembl|Q89BS7). No domains predicted signal peptide probable 6 TMHs%3B~Conserved hypothetical protein	gene	gene1345	http://www.ncbi.nlm.nih.gov/gene/?term=azo1315
azo1316	azo1316		azo1316	1433746	1434351	-	putative ATP binding protein	47%25 AAA_ATPase.IPR003439%3B ABC_transporter.IPR008995. Pfam:PF00005%3B ABC_tran%3B 1. SMART:SM00382%3B AAA%3B 1. non-secretory protein%3B~Function unclear	gene	gene1346	http://www.ncbi.nlm.nih.gov/gene/?term=azo1316
azo1317	azo1317		azo1317	1434635	1435387	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CCO1214 of Campylobacter coli of 38%25 (gi|57168023|ref|ZP_00367162.1|(NBCI ENTREZ)). Has PF07021%2C Methionine biosynthesis protein MetW%3BIPR010743%3B This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria%2C gram-positive bacteria and fungi%2C except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida%2C as in gram-positive bacteria and certain fungi%2C the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. No signal peptide. No TMHs.	gene	gene1347	http://www.ncbi.nlm.nih.gov/gene/?term=azo1317
azo1318	azo1318		azo1318	1435529	1436443	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS04440 of Ralstonia solanacearum of 40%25 (trembl|Q8Y277) TMHMM2 reporting 2 TMH's present. Signal peptide Present. Has PF04280%3BTim44-like domain(IPR007379):Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely.%3B~Conserved hypothetical protein	gene	gene1348	http://www.ncbi.nlm.nih.gov/gene/?term=azo1318
azo1319	azo1319		azo1319	1436614	1437468	-	putative methyltransferase	Hypothetical protein Rv1403c/MT1447/Mb1438c precursor. TREMBL:Q92U99_Putative methyl transferase%2C S-adenosyl-L-methionine (SAM)-29%25 identity%2C 42%25 similarity. InterPro: ubiE/COQ5 methyltransferase pimt: protein-L-isoaspartate O-methyltr Pfam: ubiE/COQ5 methyl transferase family%2C Dihydrodipicolinate synthetase family%2C TerD (Bacterial stress protein domains). HTH_1 predicted regulatory helix turn helix. TIGRFAM: moaC%2C met p-daseII%3B~Specificity unclear	gene	gene1349	http://www.ncbi.nlm.nih.gov/gene/?term=azo1319
azo1320	azo1320		azo1320	1437635	1438639	+	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene1350	http://www.ncbi.nlm.nih.gov/gene/?term=azo1320
azo1321	azo1321		azo1321	1438850	1439548	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Psyc03001842 of Psychrobacter sp. 273-4 of 57%25 (gi|52853589|ref|ZP_00145853.2|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene1351	http://www.ncbi.nlm.nih.gov/gene/?term=azo1321
azo1322	azo1322		azo1322	1439761	1440165	+	hypothetical protein		gene	gene1352	http://www.ncbi.nlm.nih.gov/gene/?term=azo1322
azo1323	azo1323		azo1323	1440382	1441617	+	probable protein kinase	Probable protein kinase InterPro: Protein kinase%2CProtein kinase-like	gene	gene1353	http://www.ncbi.nlm.nih.gov/gene/?term=azo1323
azo1324	azo1324		azo1324	1441791	1442165	-	conserved hypothetical GTP binding protein	C-terminal part of GTP-binding protein hflX. TREMBL:Q7NU63: 66%25 identity%3B 83%25 similarity ( the protein of query matches only with C-terminal part (124 aminoacids) of putative GTP binding proteins in the database) InterPro:IPR006073%3B GTP1_OBG. PRINTS:PR00326%3B GTP1OBG Pfam:Sigma54_activat: Sigma-54 interaction domain Absence of transmembrane helices (TMHMM predicted)%3B~Function unclear	gene	gene1354	http://www.ncbi.nlm.nih.gov/gene/?term=azo1324
azo1325	azo1325		azo1325	1442281	1443378	-	hypothetical membrane protein	Region start changed from 1443402 to 1443378 (-24 bases)%2C %2C Changed start codon from att to next atg	gene	gene1355	http://www.ncbi.nlm.nih.gov/gene/?term=azo1325
azo1326	azo1326		azo1326	1443478	1443669	+	Hypothetical protein	Hypothetical Protein. No domains%2C repeats%2C motifs or features could be predicted above threshold scores.	gene	gene1356	http://www.ncbi.nlm.nih.gov/gene/?term=azo1326
azo1327	azo1327	hflX2	hflX2	1443843	1445237	-	probable GTP-binding protein HflX	GTP-binding protein hflX. trembl:Q7NU63:77%25 identity%2C 83%25 similarity The proteins contain GTP-binding motifs and are GTP1_OBG. PRINTS:PR00326%3B GTP1OBG Pfam:MMR_HSR1:GTPase of unknown function thdF: tRNA modification GTPase TrmE No signal peptide present (SignalP predicted). No transmembrane helices present (TMHMM predicted)%3B~Family membership	gene	gene1357	http://www.ncbi.nlm.nih.gov/gene/?term=azo1327
azo1328	azo1328		azo1328	1445591	1446979	+	conserved hypothetical protein	Conserved hypothetical protein. Fusion Protein of bacterial extracellular solute-binding protein and transglycosylase Homology to pp1036 of P. putida of 37%25 (trembl|Q88P17) InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638)%3B solute binding protein/glutamate receptor (IPR001311)%3B SLT domain (IPR000189) Pfam: Bacterial extracellular solute-binding protein%3B Transglycosylase SLT domain signal peptide no TMHs recN: DNA repair protein RecN	gene	gene1359	http://www.ncbi.nlm.nih.gov/gene/?term=azo1328
azo1329	azo1329	aapM	aapM	1446976	1448064	-	putative amino acid permease	Putative amino-acid ABC transporter permease. Homology to aapM of R. leguminosarum of 38%25 (sprot|AAPM_RHILV) PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM YDHWXYZ FOR AN AMINO ACID%3B PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. Pfam: binding-protein-dependent transport system signal peptide probable 8 TMHs%3B~Family membership	gene	gene1360	http://www.ncbi.nlm.nih.gov/gene/?term=azo1329
azo1330	azo1330	aapQ	aapQ	1448061	1449080	-	putative amino acid permease	Putative amino acid permease. Homology to aapQ of R. leguminosarum of 35%25 (sprot|AAPQ_RHILVast). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR L-AMINO ACIDS. AFFECTS THE UPTAKE AS WELL AS EFFLUX OF THESE AMINO ACIDS. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. InterPro: Binding-protein-dependent transport systems inner membrane component (IPR000515) Pfam: Binding-protein -dependent transport system 1 HTH no signal peptide probable 4 TMHs%3B~Family membership	gene	gene1361	http://www.ncbi.nlm.nih.gov/gene/?term=azo1330
azo1331	azo1331	aapJ	aapJ	1449038	1450072	-	putative amino acid-binding protein	Putative amino acid ABC transporter periplasmic binding protein. Homology to aapJ of R. leguminosarum of 52%25 (sprot|AAPJ_RHILV). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR L-AMINO ACIDS AFFECTS THE UPTAKE AS WELL AS EFFLUX OF THESE AMINO ACIDS. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638)%3B solute binding protein/glutamate receptor (IPR001311) Pfam: Bacterial extracellular solute-binding proteins signal peptide no TMHs TIGR00045: conserved hypothetical prote%3B~High confidence in function and specificity	gene	gene1362	http://www.ncbi.nlm.nih.gov/gene/?term=azo1331
azo1332	azo1332	cbl 1	cbl 1	1450197	1451132	-	putative HTH-type transcriptional regulator cbl	HTH-type transcriptional regulator cbl (Cys regulon transcriptional activator) Belongs to the LysR family of transcriptional regulators. THIS PROTEIN IS A POSITIVE REGULATOR OF GENE EXPRESSION FOR THE CYSTEINE REGULON. THE INDUCER FOR CYSB IS N-ACETYLSERINE (BY SIMILARITY). ribD_Cterm: riboflavin-specific deami 55%25 similarity to the HTH-type transcriptional regulator cbl%2C E. coli SWISSPROT:CBL_ECOLI IPR000847%3B HTH_LysR. IPR005119%3B LysR_subst. PF00126%3B HTH_1%3B 1. helix-turn-helix PF03466%3B LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~High confidence in function and specificity	gene	gene1363	http://www.ncbi.nlm.nih.gov/gene/?term=azo1332
azo1333	azo1333	cysA	cysA	1451135	1452220	-	putative sulfate transport ATP-binding protein	Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase). Part of the ABC transporter complex cysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system (By similarity). InterPro: AAA ATPase superfamily ruvB: Holliday junction DNA helicase Ru%3B~High confidence in function and specificity	gene	gene1364	http://www.ncbi.nlm.nih.gov/gene/?term=azo1333
azo1334	azo1334	cysW	cysW	1452232	1453119	-	putative sulfate transport system permease protein	Sulfate transport system permease protein cysW. Part of the ABC transporter complex cysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane. InterPro: Binding-protein-dependent transport systems inner membrane component uppS: undecaprenyl diphosphate synthase%3B~High confidence in function and specificity	gene	gene1365	http://www.ncbi.nlm.nih.gov/gene/?term=azo1334
azo1335	azo1335	cysT	cysT	1453119	1453973	-	sulfate transport system permease protein probably	Probable sulfate transport system permease protein cysT. Part of the ABC transporter complex cysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane (By similarity). InterPro: Binding-protein-dependent transport systems inner membrane component gntP: gluconate transporter%3B~High confidence in function and specificity	gene	gene1366	http://www.ncbi.nlm.nih.gov/gene/?term=azo1335
azo1336	azo1336	cysP	cysP	1453973	1454983	-	putative sulfate transport system substrate-binding protein	CysP: sulfate/thiosulfate periplasmic binding protein. Sulfate-binding protein precursor (Sulfate starvation-induced protein 2) (SSI2). This protein specifically binds sulfate and is involved in its transmembrane transport. mazG: MazG family protein%3B~High confidence in function and specificity	gene	gene1367	http://www.ncbi.nlm.nih.gov/gene/?term=azo1336
azo1337	azo1337		azo1337	1455298	1456512	+	conserved hypothetical peptidoglycan-binding protein	Conserved hypothetical peptidoglycan binding protein. Homology to bb3579 of b. bronchiseptica of 69%25 (trembl|Q7WGL0) InterPro: Putative peptidoglycan binding domain 1 (IPR002477) Pfam: Putative peptidoglycan binding domain This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. signal peptide no TMHs%3B~Family membership	gene	gene1368	http://www.ncbi.nlm.nih.gov/gene/?term=azo1337
azo1338	azo1338		azo1338	1456606	1457373	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8FWK3 (58%25 identity)%3B TREMBL:Q9AHY1 (58%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~Family membership	gene	gene1369	http://www.ncbi.nlm.nih.gov/gene/?term=azo1338
azo1339	azo1339	ccoI	ccoI	1457532	1460015	+	putative cation-transporting ATPase	36%25 ATPase-IB1_Cu.IPR006416%3B ATPase-IB_hvy.IPR001757%3B ATPase_E1-E2.IPR005834%3B Dehal_like_hydro.IPR008250%3B E1-E2_ATPase_reg. IPR006121%3B HeavyMe_transpt.IPR000695%3B H_ATPase.IPR006191%3B Metal_bind. Pfam:PF00122%3B E1-E2_ATPase%3B 1.PF00403%3B HMA%3B 1.PF00702%3B Hydrolase%3B 1. TMHs:8%3B~Specificity unclear	gene	gene1370	http://www.ncbi.nlm.nih.gov/gene/?term=azo1339
azo1340	azo1340	ccoS	ccoS	1460020	1460229	+	conserved hypothetical cytochrome oxidase maturation protein	Conserved hypothetical cytochrome oxidase maturation protein. Homology to cco of P.Putida of 42%25 (gnl|keqq|ppu:PP4262(KEGG)). Pfam: Cytochrome oxidase maturation protein cbb3-type. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP)%2Cthe ccoNOQP operon is always found close to a second gene cluster%2C known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex%2Cpossibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase. Interpro: IPR004714 Cytochrome oxidase maturation protein cbb3-type. No signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene1371	http://www.ncbi.nlm.nih.gov/gene/?term=azo1340
azo1341	azo1341	ccoN	ccoN	1460596	1462020	+	probable cytochrome c oxidase%2C cbb3-type%2Csubunit I	Probable cytochrome c oxidase%2C cbb3-type%2C subunit I. Homology to ccoN of R. capsulatus of 62%25 (sprot|COX1_RHOCA). CYTOCHROME C OXIDASE IS THE COMPONENT OF THE RESPIRATORY CHAIN THAT CATALYZES THE REDUCTION OF OXYGEN TO WATER. SUBUNITS 1- 3 FORM THE FUNCTIONAL CORE OF THE ENZYME COMPLEX. CO I IS THE CATALYTIC SUBUNIT OF THE ENZYME. ELECTRONS ORIGINATING IN CYTOCHROME C OR A QUINOL ARE TRANSFERRED TO THE BIMETALLIC CENTER FORMED BY A HIGH-SPIN HEME AND COPPER B. Tigrfam: ccoN: cytochrome c oxidase cbb3-type Pfam: cytochrome c and quinol oxidase polyppeptide no signal peptide 12 TMHs%3B~High confidence in function and specificity	gene	gene1372	http://www.ncbi.nlm.nih.gov/gene/?term=azo1341
azo1342	azo1342	ccoO	ccoO	1462036	1462671	+	probable cytochrome c oxidase%2C cbb3-type%2Csubunit II	Probable cytochrome c oxidase%2C cbb3-type%2C subunit II Homology to ccoO of P. stutzeri of 58%25 (trembl|Q8KS21). CYTOCHROME C OXIDASE IS THE COMPONENT OF THE RESPIRATORY CHAIN THAT CATALYZES THE REDUCTION OF OXYGEN TO WATER. SUBUNITS 1- 3 FORM THE FUNCTIONAL CORE OF THE ENZYME COMPLEX. CO I IS THE CATALYTIC SUBUNIT OF THE ENZYME. ELECTRONS ORIGINATING IN CYTOCHROME C OR A QUINOL ARE TRANSFERRED TO THE BIMETALLIC CENTER FORMED BY A HIGH-SPIN HEME AND COPPER B. Tigrfam: ccoO: cytochrome c oxidase cbb3-type%2C subunit II Pfam: Cytochrome c oxidase%2C mono-heme subunit no signal peptide probable 1 TMH%3B~High confidence in function and specificity	gene	gene1373	http://www.ncbi.nlm.nih.gov/gene/?term=azo1342
azo1343	azo1343	ccoQ	ccoQ	1462691	1462864	+	Cbb3-type cytochrome oxidase%2C subuni	Cbb3-type cytochrome oxidase%2C subunit ccoQ %2C 44%25 Identity to TrEMBL%3BQ8D9I3%2C Q7MKV5%2CQ9KS21. Has PF05545%2CCbb3-type cytochrome oxidase component FixQ%3B IPR008621%3BThis family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process%2C effective symbioses depend on operation of a respiratory chain with a high affinity for O2%2C closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3)%2C which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon.	gene	gene1374	http://www.ncbi.nlm.nih.gov/gene/?term=azo1343
azo1344	azo1344	ccoP	ccoP	1462868	1463761	+	probable cytochrome c oxidase%2C cbb3-type%2Csubunit III	Probable cytochrome C oxidase subunit III. Homology to ccoP of P. stutzeri of 46%25 (trembl|Q8KS19) CYTOCHROME C OXIDASE IS THE COMPONENT OF THE RESPIRATORY CHAIN THAT CATALYZES THE REDUCTION OF OXYGEN TO WATER. SUBUNITS 1- 3 FORM THE FUNCTIONAL CORE OF THE ENZYME COMPLEX. CO I IS THE CATALYTIC SUBUNIT OF THE ENZYME. ELECTRONS ORIGINATING IN CYTOCHROME C OR A QUINOL ARE TRANSFERRED TO THE BIMETALLIC CENTER FORMED BY A HIGH-SPIN HEME AND COPPER B. Tigrfam: ccoP: cytochrome c oxidase cbb3-type Pfam: cytochrome c no signal peptide probable 2 TMHs%3B~High confidence in function and specificity	gene	gene1375	http://www.ncbi.nlm.nih.gov/gene/?term=azo1344
azo1345	azo1345	ccoG	ccoG	1463836	1465260	+	putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein	Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to fixG of R. meliloti of 36%25 (FIXG_RHIME). Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions%3B they fall into several subgroups according to the nature of their iron-sulphur cluster(s). One group%2Coriginally found in bacteria%2C has been termed ''bacterial-type''%2C in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups%2C based on their sequence properties. Most contain at least one conserved domain%2C including four Cys residues that bind to a 4Fe-4S centre. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) probable 5 TMHs . No signal peptide predicted.%3B~Family membership	gene	gene1376	http://www.ncbi.nlm.nih.gov/gene/?term=azo1345
azo1346	azo1346	ccoH	ccoH	1465265	1465780	+	conserved hypothetical membrane protein.	Conserved hypothetical membrane protein. Homology to ebA5136 Azoarcus sp. EbN1 of 51%25 (gnl|keqq|eba:ebA5136(KEGG)). Has PF05751%2C FixH%3BIPR008620%3B This family consists of several Rhizobium FixH like proteins. It has been suggested that suggested that the four proteins FixG%2C FixH%2C FixI%2C and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG. No signal peptide predicted. 1 TMHs%3B~Conserved hypothetical protein	gene	gene1377	http://www.ncbi.nlm.nih.gov/gene/?term=azo1346
azo1347	azo1347		azo1347	1465806	1465955	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domain predicted. No signal peptide 1 TMH	gene	gene1378	http://www.ncbi.nlm.nih.gov/gene/?term=azo1347
azo1348	azo1348		azo1348	1465986	1466222	+	probable transmemebrane Protein	Probable transmemebrane Protein%2C 38%25 Idneity to TrEMBL%3BQ8XZW3 Signal P reporting Signal peptide present. TMHMM2 reporting 1 TMH present.	gene	gene1379	http://www.ncbi.nlm.nih.gov/gene/?term=azo1348
azo1349	azo1349		azo1349	1466484	1466927	-	putative universal stress protein f	Putative universal stress protein F%2C%3B~Conserved hypothetical protein	gene	gene1381	http://www.ncbi.nlm.nih.gov/gene/?term=azo1349
azo1350	azo1350	phbC2	phbC2	1467151	1468884	+	probable poly-beta-hydroxybutyrate synthase	FUNCTION: Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation. Entry name :-PHBC_AZOCA Primary accession number:- O66392 Identity:-41%25 InterPro :-IPR000073%3B A/b_hydrolase. Pfam:- PF07167%3B PhaC_N%3B 1. Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene1382	http://www.ncbi.nlm.nih.gov/gene/?term=azo1350
azo1351	azo1351	fnr	fnr	1468907	1469707	-	probable fumarate and nitrate reduction regulatory protein	Fumarate and nitrate reduction regulatory protein. Global transcription factor that controls the expression of over 100 target genes in response to anoxia. It facilitates the adaptation to anaerobic growth conditions by regulating the expression of gene products that are involved in anaerobic energy metabolism. When the terminal electron acceptor O(2) is no longer available it represses the synthesis of enzymes involved in aerobic respiration and increases the synthesis of enzymes required for anaerobic respiration. Similar to SWISSPROT: sprot|FNR_ECOLI (39%25 Escherichia coli%2C fumarate and nitrate reduction regulatory protein Fnr) / sprot|ANR_PSEAE (40%25 Pseudomonas aeruginosa%2Ctranscriptional activator protein Anr) InterPro: IPR000595 cNMP_binding. IPR001808 HTH_Crp. Pfam: PF00027 cNMP_binding. PF00325 Crp. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene1383	http://www.ncbi.nlm.nih.gov/gene/?term=azo1351
azo1352	azo1352	hemN	hemN	1469756	1471147	+	coproporphyrinogen oxidase	Oxygen-independent coproporphyrinogen III oxidase. ANAEROBIC TRANSFORMATION OF COPROPORPHYRINOGEN-III INTO PROTOPORPHYRINOGEN-IX. hemN: oxygen-independent coproporphyrinogen III oxidase%3B~High confidence in function and specificity	gene	gene1384	http://www.ncbi.nlm.nih.gov/gene/?term=azo1352
azo1353	azo1353		azo1353	1471235	1471951	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA5153 of Azoarcus sp. EbN1 of 79%25 (gnl|keqq|eba:ebA5153(KEGG)). Has PF02683%3BCytochrome C biogenesis protein transmembrane region (IPR003834 Ctytoch_TM): This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family. No signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene1385	http://www.ncbi.nlm.nih.gov/gene/?term=azo1353
azo1354	azo1354	copY	copY	1471968	1472363	-	putative regulatory protein	Heavy metal dependent transcription regulator 2. TRANSCRIPTIONAL REGULATOR INVOLVED IN ACID TOLERANCE. BINDS COPPER (By similarity). It contains a n-terminal dna binding region and a c- terminal metal binding region (by similarity). 35%25 HTH_MerR.IPR009061%3B Putativ_DNA_bind. Pfam:PF00376%3B MerR%3B 1. TIGR00372: conserved hypothetical protei%3B~High confidence in function and specificity	gene	gene1386	http://www.ncbi.nlm.nih.gov/gene/?term=azo1354
azo1355	azo1355	copA	copA	1472442	1474877	+	putative Cu2+ transporting ATPase	CopA: copper transporting P-type ATPase protein%2Cinvolved in the uptake and metabolism of copper. 44%25 ATPase-IB1_Cu.IPR006416%3B ATPase-IB_hvy.IPR001757%3B ATPase_E1-E2.IPR001756%3B Cu_ATPase.IPR005834%3B Dehal_like_hydro.IPR008250%3B E1-E2_ATPase_reg.IPR006121%3B HeavyMe_transpt.IPR006191%3B Metal_bind. Pfam:PF00122%3B E1-E2_ATPase%3B 1.PF00403%3B HMA%3B 1.PF00702%3B Hydrolase%3B 1. TIGR00003: copper-ion-binding protein. TMHs:8.%3B~High confidence in function and specificity	gene	gene1387	http://www.ncbi.nlm.nih.gov/gene/?term=azo1355
azo1356	azo1356	copZ	copZ	1474902	1475111	+	conserved hypothetical copper chaperon	Conserved hypothetical copper chaperon. Homology to copZ of copZ Azoarcus sp. EbN1 of 66%25. Pfam: Heavy-metal-associated domain. Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. Tigrfam: TIGR00003: copper-ion-binding protein. No signal peptide. No TMHs.%3B~Conserved hypothetical protein	gene	gene1388	http://www.ncbi.nlm.nih.gov/gene/?term=azo1356
azo1357	azo1357		azo1357	1475126	1477969	-	EAL/GGDEF/PAS/PAC-domain containing signalling protein	EAL/GGDEF/PAS/PAC-domain containing signalling protein%2C%3B~Conserved hypothetical protein	gene	gene1389	http://www.ncbi.nlm.nih.gov/gene/?term=azo1357
azo1358	azo1358	ppa	ppa	1478241	1478768	+	probable inorganic pyrophosphatase	Probable inorganic pyrophosphatase. Homology to ppa of E. coli of 66%25 (sprot|IPYR_ECOLI). CATALYTIC ACTIVITY Diphosphate + H(2)O %3D 2 phosphate. Pfam: Inorganic pyrophospatease no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1390	http://www.ncbi.nlm.nih.gov/gene/?term=azo1358
azo1359	azo1359		azo1359	1478841	1479977	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to BB3581 of B.bronchiseptica of 53%25 (tremble:Q7WGK8). Has PF04339:(IPR00743)Protein of unknown function%2C DUF482%3BThis family contains several proteins of uncharacterised function. NO signal peptide or TMH present.	gene	gene1391	http://www.ncbi.nlm.nih.gov/gene/?term=azo1359
azo1360	azo1360	nadE	nadE	1480139	1481755	+	NAD(+) synthase (glutamine-hydrolyzing)	Probable glutamine- or nh3-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+) synthase [glutamine-hydrolyzing]). CAN USE BOTH GLUTAMINE OR AMMONIA AS A NITROGEN SOURCE (BY SIMILARITY). InterPro: NAD+ synthase nadE: NAD+ synthetase%3B~High confidence in function and specificity	gene	gene1392	http://www.ncbi.nlm.nih.gov/gene/?term=azo1360
azo1361	azo1361	glnB	glnB	1481805	1482143	+	PII-like signal transmitter protein GlnB	PII-like signal transmitter proteins are involved in the regulation of ammonium assimilation and nitrogen fixation. The PII-like proteins differed from each other in details of N-sensing. They were covalently modified by uridylylation upon nitrogen limitation. Similar to trembl|Q9EZQ2 (100%25) and to trembl|Q8XWX5 (82%25). Pfam: Nitrogen regulatory protein P-II%3B~High confidence in function and specificity	gene	gene1393	http://www.ncbi.nlm.nih.gov/gene/?term=azo1361
azo1362	azo1362		azo1362	1482173	1483225	-	hypothetical protein	Hypothetical protein. no homology of the entire protein with the data bank. Pfam: Smr domain InterPro: Smr domain This family includes the Smr (Small MutS Related) proteins%2C and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2. no signal peptide no TMHs	gene	gene1394	http://www.ncbi.nlm.nih.gov/gene/?term=azo1362
azo1363	azo1363	trxB2	trxB2	1483241	1484191	-	thioredoxin-disulfide reductase	Thioredoxin-disulfide reductase(EC 1.8.1.9). Homology to trxB of E. coli of 71%25 (sprot|TRXB_ECOLI). Catalyse the reaction: thioredoxin + nadp(+) %3D thioredoxin disulfide + nadph Pfam: Pyridine nucleotide-disulphide oxidoreductase signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1395	http://www.ncbi.nlm.nih.gov/gene/?term=azo1363
azo1364	azo1364	vfr	vfr	1484423	1485094	+	probable cyclic AMP receptor protein	Probable cyclic amp receptor-like protein%2C%3B~High confidence in function and specificity	gene	gene1396	http://www.ncbi.nlm.nih.gov/gene/?term=azo1364
azo1365	azo1365	FtsK	FtsK	1485243	1487531	+	putative cell division protein	DNA translocase ftsK 2. InterPro: FtsK/SpoIIIE family%3B~High confidence in function and specificity	gene	gene1397	http://www.ncbi.nlm.nih.gov/gene/?term=azo1365
azo1366	azo1366	lolA	lolA	1487528	1488205	+	putative outer membrane lipoprotein carrier protein	Putative outer-membrane lipoprotein carrier protein. Homology to lolA of E. coli of 25%25 (sprot|LOLA_ECOLI) Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity). Pfam: outer membrane lipoprotein carrier protein LolA Tigrfam: lolA: outer membrane lipoprotein carrier singal peptide no TMHs%3B~Family membership	gene	gene1398	http://www.ncbi.nlm.nih.gov/gene/?term=azo1366
azo1367	azo1367		azo1367	1488217	1489554	+	conserved hypothetical protein	Hypothetical protein CBU1189. InterPro: AAA-protein (ATPases associated with various cellular activities) ruvB: Holliday junction DNA helicase R.%3B~Specificity unclear	gene	gene1399	http://www.ncbi.nlm.nih.gov/gene/?term=azo1367
azo1368	azo1368		azo1368	1489593	1489856	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA7035 of Azoarcus sp. EbN1 of 79%25 (gnl|keqq|eba:ebA7035(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene1400	http://www.ncbi.nlm.nih.gov/gene/?term=azo1368
azo1369	azo1369		azo1369	1490125	1491417	+	SerS protein	Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).%3B~High confidence in function and specificity	gene	gene1401	http://www.ncbi.nlm.nih.gov/gene/?term=azo1369
azo1370	azo1370		azo1370	1491592	1493208	+	putative aerotaxis receptor protein	Aerotaxis receptor protein%2C%3B~Specificity unclear	gene	gene1402	http://www.ncbi.nlm.nih.gov/gene/?term=azo1370
azo1371	azo1371	lpdA	lpdA	1493285	1495105	-	dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase. Homology to lpdA of N. meningitides of 70%25 (trembl|Q59099). THE BRANCHED-CHAIN ALPHA-KETO DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF ALPHA-KETO ACIDS TO ACYL-COA AND CO(2). IT CONTAINS MULTIPLE COPIES OF 3 ENZYMATIC COMPONENTS: BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE (E1) LIPOAMIDE ACYLTRANSFERASE (E2) AND LIPOAMIDE DEHYDROGENASE (E3) (BY SIMILARITY). InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327)%3B Pyridine nucleotide-disulphide oxidoreductase%2C classI (IPR001100)%3B biotin/Lipoyl attachment (IPR000089)%3B Pyridine nucleotide-disulphide oxidoreductase dimersiation domain (IPR004099)%3B NAD binding site (IPR000205)%3B 2-oxo acid dehydrogenase acetyltransferase%2C classI (IPR003016) Pfam: Biotin-requiring enzyme%3B Pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide oxidoreductase dimersation domain no TMHs no signal peptide%3B~High confidence in function and specificity	gene	gene1403	http://www.ncbi.nlm.nih.gov/gene/?term=azo1371
azo1372	azo1372	pdhB	pdhB	1495116	1496804	-	probable dihydrolipoamide acetyltransferase	Probable dihydrolipoamide acetyltransferase. Homology to pdhB of A. eutrophus of 62%25 (sprot|ODP2_ALCEU) THE PYRUVATE DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF PYRUVATE TO ACETYL-COA %26 CO(2). IT CONTAINS MULTIPLE COPIES OF THREE ENZYMATIC COMPONENTS: PYRUVATE DEHYDROGENASE (E1) DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2) %26 LIPOAMIDE DEHYDROGENASE (E3) (BY SIMILARITY). InterPro: 2-Oxo acid dehydrogenase acyltransferase catalytic domain (IPR001078)%3B Type I antifreeze protein (IPR000104)%3B Biotin/Lipoyl attachment (IPR000089)%3B E3 binding domain (IPR004167)%3B 2-Oxo acid dehydrogenase acyltransferase component lipoyl binding site (IPR003016) Pfam: Biotin-requiring enzyme%3B E3 binding domain%3B 2-oxo dehydrogenase acyltransferase Tigrfam: BCCP: acetyl-CoA carboxylase biotin carboxyl carrier protein no TMHs no signal peptide%3B~High confidence in function and specificity	gene	gene1404	http://www.ncbi.nlm.nih.gov/gene/?term=azo1372
azo1373	azo1373	pdhA	pdhA	1496825	1499506	-	pyruvate dehydrogenase	Pyruvate dehydrogenase. Homology to pdhA of A. eutropus of 77%25 (sprot|ODP1_ALCEU). THE PYRUVATE DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF PYRUVATE TO ACETYL-COA %26 CO(2). IT CONTAINS MULTIPLE COPIES OF THREE ENZYMATIC COMPONENTS: PYRUVATE DEHYDROGENASE (E1) DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2) %26 LIPOAMIDE DEHYDROGENASE (E3) (BY SIMILARITY). Tigrfam: aceE: 2-oxo-acid dehydrogenase E1 comp no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1405	http://www.ncbi.nlm.nih.gov/gene/?term=azo1373
azo1374	azo1374		azo1374	1499913	1501118	-	extracellular ligand binding protein	This family includes extracellular ligand binding domains of a wide range of receptors and it also includes the bacterial amino acid binding proteins of known structure. Similar to tremblnew|AAR35111 (24%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Family membership	gene	gene1406	http://www.ncbi.nlm.nih.gov/gene/?term=azo1374
azo1375	azo1375		azo1375	1501285	1503999	+	putative two-component sensor kinase	Putative two-component sensor kinase%2C%3B~Specificity unclear	gene	gene1407	http://www.ncbi.nlm.nih.gov/gene/?term=azo1375
azo1376	azo1376	fixJ2	fixJ2	1503974	1504612	+	probable transcriptional regulatory protein	Probable transcriptional regulatory protein%2C%3B~Specificity unclear	gene	gene1408	http://www.ncbi.nlm.nih.gov/gene/?term=azo1376
azo1377	azo1377	folD	folD	1504697	1505572	+	methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase	FolD bifunctional protein [Includes: Methylenetetrahydrofolate dehydrogenase%3B Methenyltetrahydrofolate cyclohydrolase]. InterPro: Tetrahydrofolate dehydrogenase/cyclohydrolase%3B~High confidence in function and specificity	gene	gene1409	http://www.ncbi.nlm.nih.gov/gene/?term=azo1377
azo1378	azo1378	purE	purE	1505580	1506092	+	phosphoribosylaminoimidazole carboxylase	Phosphoribosylaminoimidazole carboxylase(AIR carboxylase) (AIRC). InterPro: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase%3B~High confidence in function and specificity	gene	gene1410	http://www.ncbi.nlm.nih.gov/gene/?term=azo1378
azo1379	azo1379	purK	purK	1506220	1507401	+	Official Name Phosphoribosylaminoimidazole carboxylase	Phosphoribosylaminoimidazole carboxylase (AIR carboxylase) (AIRC)%3B~High confidence in function and specificity	gene	gene1411	http://www.ncbi.nlm.nih.gov/gene/?term=azo1379
azo1380	azo1380		azo1380	1507398	1508429	+	conserved hypothetical protein	Hypothetical protein ywlC. TIGR00057: Sua5/YciO/YrdC/YwlC family%3B~Specificity unclear	gene	gene1412	http://www.ncbi.nlm.nih.gov/gene/?term=azo1380
azo1381	azo1381	carA	carA	1508792	1509934	+	Carbamoyl-phosphate synthase (glutamine-hydrolyzing)	Carbamoyl-phosphate synthase (glutamine-hydrolyzing) small chain%3B~High confidence in function and specificity	gene	gene1414	http://www.ncbi.nlm.nih.gov/gene/?term=azo1381
azo1382	azo1382	carB	carB	1509989	1513216	+	Carbamoyl-phosphate synthase (glutamine-hydrolyzing)	Carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain InterPro: Carbamoyl-phosphate synthase%3B~High confidence in function and specificity	gene	gene1415	http://www.ncbi.nlm.nih.gov/gene/?term=azo1382
azo1383	azo1383	greA	greA	1513213	1513689	+	putative transcription elongation factor	Transcription elongation factor GreA Transcription elongation factor greA (Transcript cleavage factor greA). Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as greA or greB allows the resumption of elongation from the new 3terminus. GreA releases sequences of 2 to 3 nucleotides (By similarity). Belongs to the greA/greB family. 58%25 1. PF03449 GreA_GreB_N%3B 1. TIGFRAM TIGR01462%3B greA%3B 1. PurN: phosphoribosylglycinamide formylt%3B~High confidence in function and specificity	gene	gene1416	http://www.ncbi.nlm.nih.gov/gene/?term=azo1383
azo1384	azo1384		azo1384	1513701	1514171	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS03781 of Ralstonia solanacearum of 39%25 (trembl|Q8XZ81(SRS)). no domains predicted. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene1417	http://www.ncbi.nlm.nih.gov/gene/?term=azo1384
azo1385	azo1385		azo1385	1514202	1514663	-	conserved hypothetical protein		gene	gene1418	http://www.ncbi.nlm.nih.gov/gene/?term=azo1385
azo1386	azo1386	FtsJ	FtsJ	1514707	1515324	+	ribosomal RNA large subunit methyltransferase j	Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) (rRNA (uridine-2-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) (Cell division protein ftsJ homolog). Specifically methylates the uridine in position 2552 of 23S rRNA in the 50S particle%3B~High confidence in function and specificity	gene	gene1419	http://www.ncbi.nlm.nih.gov/gene/?term=azo1386
azo1387	azo1387	FtsH	FtsH	1515440	1517332	+	probable cell division protein FtsH	Cell division protease ftsH. Homology to ftsH of E. coli of 64%25 (SWISSPROT:FTSH_ECOLI) SEEMS TO ACT AS AN ATP-DEPENDENT ZINC METALLOPEPTIDASE. INVOLVED IN THE DEGRADATION OF SIGMA-32. DEGRADES CARBOXY- TERMINAL-TAGGED CYTOPLASMIC PROTEINS. THESE PROTEINS ARE TAGGED WITH AN 11-AMINO-ACID NONPOLAR DESTABILIZING TAIL VIA A MECHANISM INVOLVING THE 10SA (SSRA) STABLE RNA (By similarity). Pfam: ATPase family associated with various celluar activities%3BPeptidase family M41 probable signal peptide probable 1 TMH%3B~High confidence in function and specificity	gene	gene1420	http://www.ncbi.nlm.nih.gov/gene/?term=azo1387
azo1388	azo1388	folP	folP	1517394	1518215	+	dihydropteroate synthase	Dihydropteroate synthase (EC 2.5.1.15) (DHPS) (Dihydropteroate pyrophosphorylase). DHPS catalyzes the formation of the immediate precursor of folic acid. It is implicated in resistance to sulfonamide (By similarity).%3B~High confidence in function and specificity	gene	gene1421	http://www.ncbi.nlm.nih.gov/gene/?term=azo1388
azo1389	azo1389	glmM	glmM	1518249	1519604	+	putative phosphoglucomutase	Phosphoglucomutase/phosphomannomutase protein%2C MrsA homolog. Involved in the interconversion of glucose-1-phosphate to glucose-6-phosphate or mannose-1-phosphate to mannose-6-phosphate. The enzyme is involved in the pathway for bacterial cell-wall peptidoglycan and lipopolysaccharide biosyntheses%2C being an essential step in the pathway for UDP-N-acetylglucosamine biosynthesis. Similar to the phosphoglucosamine mutase%2C GlmM protein from E.coli. GLMM_ECOLI:P31120.InterPro:IPR006352%3B GlmM.IPR005841%3B PG/PMM_mutase.IPR005844%3BPG_PMM_ABAI.IPR005845%3B PG_PMM_ABAII.IPR005846%3B PG_PMM_ABAIII.IPR005843%3B PG_PMM_C. Pfam:PF02878%3B PGM_PMM_I%3B 1.PF02879%3B PGM_PMM_II%3B 1.PF02880%3B PGM_PMM_III%3B 1.PF00408%3B PGM_PMM_IV%3B 1. TIGR01455%3B glmM%3B 1.%3B~High confidence in function and specificity	gene	gene1422	http://www.ncbi.nlm.nih.gov/gene/?term=azo1389
azo1390	azo1390	pstS2	pstS2	1519717	1520757	+	probable phosphate-binding periplasmic protein	61%25 Peri-phosph.IPR006059%3B SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. TIGRFAMs:TIGR00975%3B 3a0107s03%3B 1. Signal peptide present.%3B~High confidence in function and specificity	gene	gene1423	http://www.ncbi.nlm.nih.gov/gene/?term=azo1390
azo1391	azo1391	pstC	pstC	1520867	1521829	+	phosphate transport system permease protein probable.	PstC: Phosphate transport system permease protein. PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR PHOSPHATE%3B PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. Part of ABC-type phosphate transport system. InterPro: Binding-protein-dependent transport systems inner membrane component gntP: gluconate transporter%3B~High confidence in function and specificity	gene	gene1424	http://www.ncbi.nlm.nih.gov/gene/?term=azo1391
azo1392	azo1392		azo1392	1521902	1522681	+	phosphate transport system permease protein probable.	Region start changed from 1521840 to 1521903 (-63 bases)	gene	gene1425	http://www.ncbi.nlm.nih.gov/gene/?term=azo1392
azo1393	azo1393	pstB	pstB	1522714	1523478	+	phosphate transport ATP-binding protein probable.	Phosphate import ATP-binding protein pstB (EC 3.6.3.27) (Phosphate- transporting ATPase) (ABC phosphate transporter) (Peripheral membrane protein B). Part of the ABC transporter complex pstSACB (TC 3.A.1.7.1) involved in phosphate import. Responsible for energy coupling to the transport system. mobB: molybdopterin-guanine dinucleotide%3B~High confidence in function and specificity	gene	gene1426	http://www.ncbi.nlm.nih.gov/gene/?term=azo1393
azo1394	azo1394	tim	tim	1523592	1524320	+	putative triosephosphate isomerase	Triosephosphate isomerase%2C belongs to the triosephosphate isomerase family.Plays an important role in several metabolic pathways.Involved in the reaction: d-glyceraldehyde 3-phosphate %3D glycerone phosphate. 47%25 Triophos_ismrse. Pfam:PF00121%3B TIM%3B 1. TIGRFAMs:TIGR00419%3B tim%3B 1.%3B~High confidence in function and specificity	gene	gene1427	http://www.ncbi.nlm.nih.gov/gene/?term=azo1394
azo1395	azo1395	secG	secG	1524363	1524725	+	preprotein translocase SecG subunit	Protein-export membrane protein secG. Involved in protein export. Participates in an early event of protein translocation (By similarity). Together with SecY and SecG%2C SecE forms a multimeric channel through which preproteins are translocated%2C using both proton motive forces and ATP-driven secretion. pfam: preprotein translocase tigerfam: preprotein translocase most propable TMH: 2 no signal peptide InterPro: Preprotein translocase SecG subunit Pfam: secG: preprotein translocase SecG subuni%3B~High confidence in function and specificity	gene	gene1428	http://www.ncbi.nlm.nih.gov/gene/?term=azo1395
azo1396	azo1396	nuoA	nuoA	1524978	1525352	+	putative NADH-ubiquinone oxidoreductase chain A	NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3). Ndh-1 shuttles electrons from nadh%2C via fmn and iron-sulfur (fe-s) centers%2C to quinones in the respiratory chain. the immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity).%3B~High confidence in function and specificity	gene	gene1430	http://www.ncbi.nlm.nih.gov/gene/?term=azo1396
azo1397	azo1397	nuoB2	nuoB2	1525357	1525833	+	putative NADH-ubiquinone oxidoreductase chain B	NADH-ubiquinone oxidoreductase 20 kDa subunit (EC 1.6.5.3) (NADH dehydrogenase subunit 10). Ndh-1 shuttles electrons from nadh%2C via fmn and iron- sulfur (fe-s) centers%2C to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity).%3B~High confidence in function and specificity	gene	gene1431	http://www.ncbi.nlm.nih.gov/gene/?term=azo1397
azo1398	azo1398	nuoC	nuoC	1525851	1526456	+	respiratory-chain NADH dehydrogenase%2C chain C probable.	NADH-quinone oxidoreductase chain C (EC 1.6.99.5) (NADH dehydrogenase I chain C) (NDH-1 chain C). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). InterPro: Respiratory-chain NADH dehydrogenase 30 Kd subunit comE: comEA protein%3B~High confidence in function and specificity	gene	gene1432	http://www.ncbi.nlm.nih.gov/gene/?term=azo1398
azo1399	azo1399	nuoD	nuoD	1526449	1527702	+	putative NADH-ubiquinone oxidoreductase chain D	NADH-ubiquinone oxidoreductase 49 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (NADH dehydrogenase subunit 7). TRANSFER OF ELECTRONS FROM NADH TO THE RESPIRATORY CHAIN. THE IMMEDIATE ELECTRON ACCEPTOR FOR THE ENZYME IS BELIEVED TO BE UBIQUINONE. COMPONENT OF THE IRON-SULFUR (IP) FRAGMENT OF THE ENZYME (BY SIMILARITY).%3B~High confidence in function and specificity	gene	gene1433	http://www.ncbi.nlm.nih.gov/gene/?term=azo1399
azo1400	azo1400	nuoE	nuoE	1527783	1528262	+	putative NADH-ubiquinone oxidoreductase chain E	NADH-ubiquinone oxidoreductase 24 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3). TRANSFER OF ELECTRONS FROM NADH TO THE RESPIRATORY CHAIN. THE IMMEDIATE ELECTRON ACCEPTOR FOR THE ENZYME IS BELIEVED TO BE UBIQUINONE. COMPONENT OF THE FLAVOPROTEIN-SULFUR (FP) FRAGMENT OF THE ENZYME. InterPro: Respiratory-chain NADH dehydrogenase 24 Kd subunit L12: ribosomal protein L7/L12%3B~High confidence in function and specificity	gene	gene1434	http://www.ncbi.nlm.nih.gov/gene/?term=azo1400
azo1401	azo1401	nuoF	nuoF	1528259	1529578	+	putative NADH-ubiquinone oxidoreductase chain F	NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH dehydrogenase I chain F) (NDH-1 chain F). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit gnd_rel: 6-phosphogluconate dehydrogenas%3B~High confidence in function and specificity	gene	gene1435	http://www.ncbi.nlm.nih.gov/gene/?term=azo1401
azo1402	azo1402	nuoG	nuoG	1529572	1531887	+	putative NADH-ubiquinone oxidoreductase chain G	NADH-ubiquinone oxidoreductase 78 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-78KD) (CI-78KD). This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized. Ndh-1 shuttles electrons from nadh%2C via fmn and iron- sulfur (fe-s) centers%2C to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity). L12: ribosomal protein L7/L12%3B~High confidence in function and specificity	gene	gene1436	http://www.ncbi.nlm.nih.gov/gene/?term=azo1402
azo1403	azo1403	nuoH	nuoH	1531887	1532936	+	putative NADH-ubiquinone oxidoreductase chain H	NADH-quinone oxidoreductase chain H (EC 1.6.99.5) (NADH dehydrogenase I chain H) (NDH-1 chain H). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). InterPro: Respiratory-chain NADH dehydrogenase subunit 1 nup: nucleoside transporter%3B~High confidence in function and specificity	gene	gene1437	http://www.ncbi.nlm.nih.gov/gene/?term=azo1403
azo1404	azo1404	nuoI	nuoI	1532947	1533432	+	putative NADH-ubiquinone oxidoreductase%2C chain I	NDH-1 shuttles electrons from nadh%2C via fmn and iron- sulfur (fe-s) centers%2C to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity). NADH-ubiquinone oxidoreductase 23 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD) (CI-28.5KD). MAY DONATE ELECTRONS TO UBIQUINONE. ndhI: NADH-plastoquinone oxidoreductase%3B~High confidence in function and specificity	gene	gene1438	http://www.ncbi.nlm.nih.gov/gene/?term=azo1404
azo1405	azo1405	nuoJ	nuoJ	1533469	1534071	+	NADH-ubiquinone oxidoreductase%2C chain J probable.	NADH-quinone oxidoreductase chain J (EC 1.6.99.5) (NADH dehydrogenase I chain J) (NDH-1 chain J). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient. MIP: MIP family channel proteins%3B~High confidence in function and specificity	gene	gene1439	http://www.ncbi.nlm.nih.gov/gene/?term=azo1405
azo1406	azo1406	nuoK	nuoK	1534128	1534433	+	putative NADH-ubiquinone oxidoreductase%2C chain K	NADH-ubiquinone oxidoreductase chain 4L (EC 1.6.5.3). InterPro: NADH-ubiquinone oxidoreductase chain 4L Ndh-1 shuttles electrons from nadh%2C via fmn and iron-sulfur (fe-s) centers%2C to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity).%3B~High confidence in function and specificity	gene	gene1440	http://www.ncbi.nlm.nih.gov/gene/?term=azo1406
azo1407	azo1407	nuoL	nuoL	1534446	1536470	+	NADH-ubiquinone oxidoreductase%2C chain L probable.	NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH dehydrogenase I chain L) (NDH-1 chain L). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). 2A0310: amino acid permease (yeast)%3B~High confidence in function and specificity	gene	gene1441	http://www.ncbi.nlm.nih.gov/gene/?term=azo1407
azo1408	azo1408	nuoM	nuoM	1536546	1538027	+	putative NADH-ubiquinone oxidoreductase%2C chain M	NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH dehydrogenase I chain M) (NDH-1 chain M). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient. InterPro: NADH-Ubiquinone/plastoquinone (complex I) various chains livcs: branched-chain amino acid trans%3B~High confidence in function and specificity	gene	gene1442	http://www.ncbi.nlm.nih.gov/gene/?term=azo1408
azo1409	azo1409	nuoN	nuoN	1538065	1539540	+	NADH-ubiquinone oxidoreductase%2C chain N probable.	NADH-quinone oxidoreductase chain N 2 (EC 1.6.99.5) (NADH dehydrogenase I chain N 2) (NDH-1 chain N 2). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). InterPro: NADH-Ubiquinone/plastoquinone (complex I) various chains ncs2: uracil-xanthine permease%3B~High confidence in function and specificity	gene	gene1443	http://www.ncbi.nlm.nih.gov/gene/?term=azo1409
azo1410	azo1410		azo1410	1539628	1540179	+	ADP-ribose diphosphatase	ADPribose diphosphatase. ACTIVE ON ADENOSINE(5)TRIPHOSPHO(5)ADENOSINE (AP3A) ADP-RIBOSE NADH ADENOSINE(5)DIPHOSPHO(5)ADENOSINE (AP2A). InterPro: NUDIX hydrolase TIGR00052: conserved hypothetical protein.%3B~High confidence in function and specificity	gene	gene1444	http://www.ncbi.nlm.nih.gov/gene/?term=azo1410
azo1411	azo1411		azo1411	1540276	1543152	-	conserved hypothetical ribonucleoside reductase	Conserved hypothetical ribonucleoside reductase. Homology to nrdE of C. violaceum of 62%25 (trembl|Q7NY29). Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides precursors that are necessary for DNA synthesis (By similarity). InterPro: Ribonucleotide reductase large subunit (IPR000788) Pfam: Ribonucleotide reductase%2C all-alpha domein%3B Ribonucleotide reductase%2C barrel domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1445	http://www.ncbi.nlm.nih.gov/gene/?term=azo1411
azo1412	azo1412	hoxF	hoxF	1543481	1545289	+	probable hydrogen dehydrogenase%2C alpha subunit	Probable hydrogen dehydrogenase%2C alpha subunit. Homology to hoxF of A. eutrophus of 41%25 (sprot|HOXF_ALCEU). SUBUNITS ALPHA AND GAMMA OF HOXS CONSTITUTE AN NADH-OXIDOREDUCTASE. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit (IPR001949)%3B Respiratory-chain NADH dehydrogenase 24 Kd subunit (IPR002023) Pfam: Respiratory-chain NADH dehydrogenase 24 Kd subunit%3B Respiratory-chain NADH dehydrogenase 51 Kd subunit no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1446	http://www.ncbi.nlm.nih.gov/gene/?term=azo1412
azo1413	azo1413	hoxU	hoxU	1545286	1545990	+	probable hydrogen dehydrogenase%2C gamma subunit	Probable hydrogen dehydrogenase%2C gamma subunit. Homology to hoxU of A. eutrophus of 40%25 (pir|B35385(PIR). Binds 3 4Fe-4S clusters per subunit (Potential). Pfam: 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1447	http://www.ncbi.nlm.nih.gov/gene/?term=azo1413
azo1414	azo1414	hoxY	hoxY	1545987	1546559	+	probable hydrogen dehydrogenase%2C delta subunit	Probable hydrogen dehydrogenase%2C delta subunit. Homology to hoxY of a. eutrophus of 45%25 (sprot|HOXY_ALCEU). InterPro: Respiratory-chain NADH dehydrogenase 20 Kd subunit Pfam: NADH ubiquinone oxidoreductase%2C 20 kD subunit no signal peptie no TMHs%3B~High confidence in function and specificity	gene	gene1448	http://www.ncbi.nlm.nih.gov/gene/?term=azo1414
azo1415	azo1415	hoxH	hoxH	1546567	1548030	+	probable hydrogen dehydrogenase%2C beta subunit	Probable hydrogen dehydrogenase%2C beta subunit. Homology to hoxH of a. eutrophus of 48%25 (sprot|HOXH_ALCEU). Pfam: Nickel-dependent hydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1449	http://www.ncbi.nlm.nih.gov/gene/?term=azo1415
azo1416	azo1416		azo1416	1548062	1548553	+	conserved hypothetical protein	conserved hypothetical protein. Homology to an orf of R. capsulata of 42%25 (trembl|Q9XBW7). Tigrfam: hycI: hydrogenase maturation protease no signal peptide no TMHs	gene	gene1450	http://www.ncbi.nlm.nih.gov/gene/?term=azo1416
azo1417	azo1417		azo1417	1548563	1549420	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to GSU0904 of Geobacter sulfurreducens of 31%25 (gnl|keqq|gsu:GSU0904(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene1451	http://www.ncbi.nlm.nih.gov/gene/?term=azo1417
azo1418	azo1418	czcD2	czcD2	1549449	1550681	-	putative cobalt-zinc-cadmium resistance protein	CzcD: Members of this family are integral membrane proteins that are found to increase tolerance to divalent metal ions such as cadmium%2C zinc%2C and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. 41%25 Cation_efflux. Pfam:PF01545%3B Cation_efflux%3B 1. TMhelix:6.%3B~High confidence in function and specificity	gene	gene1452	http://www.ncbi.nlm.nih.gov/gene/?term=azo1418
azo1419	azo1419		azo1419	1550659	1551510	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Rsc1208 of R. solanacearum of 45%25 (trembl|Q8Y036). InterPro: AP endonucleases family 1 (IPR000097) tigrfam: xth: exodeoxyribonuclease III (xth) All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA. Pfam: AP endonuclease family 1 no signal peptide no TMHs	gene	gene1453	http://www.ncbi.nlm.nih.gov/gene/?term=azo1419
azo1420	azo1420		azo1420	1551523	1552323	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV3790 of Chromobacterium violaceum of 42%25 (trembl|Q7NRJ1). No domains predicted. no signal peptide 5 TMHs%3B~Conserved hypothetical protein	gene	gene1454	http://www.ncbi.nlm.nih.gov/gene/?term=azo1420
azo1421	azo1421		azo1421	1552425	1553234	-	probable carboxylesterase	TREMBLNEW:CAE27009: Probable carboxylesterase%2C 50%25 identity%2C 60%25 similarity. Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component). InterPro: Alpha/beta hydrolase fold: IPR000073%3B A/b_hydrolase. IPR003089%3B AB_hydrolase. IPR000379%3B Ser_estrs. Pfam PF00561%3B Abhydrolase_1 InterPro: Alpha/beta hydrolase fold kdgT: 2-keto-3-deoxygluconate permease%3B~Family membership	gene	gene1455	http://www.ncbi.nlm.nih.gov/gene/?term=azo1421
azo1422	azo1422		azo1422	1553238	1554542	-	probable O-acetylhomoserine aminocarboxypropyltransferase	Probable O-acetylhomoserine aminocarboxypropyltransferase. Homology with cysD of A. nidulans of 54%25 (sprot|CYSD_EMENI). Transforms O-acetylhomoserine into homocysteine. InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes (IPR000277) Pfam: Cys/Met metabolism PLP-dependent enzyme no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1456	http://www.ncbi.nlm.nih.gov/gene/?term=azo1422
azo1423	azo1423		azo1423	1554602	1554817	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to bsr7110 of B.japonicum of 48%25 (tremble:Q89EH5). Pfam:Protein of unknown function (DUF465) Family members are found in small bacterial proteins%2C and also in the heavy chains of eukaryotic myosin and kinesin%2C C terminal of the motor domain (Myosin Myosin_head%2C Kinesin Kinesin). Members of this family may form coiled coil structures. No signal peptide present. No TMH	gene	gene1457	http://www.ncbi.nlm.nih.gov/gene/?term=azo1423
azo1424	azo1424	greB	greB	1554874	1555542	+	putative transcription elongation factor	Transcription elongation factor GreB (Transcript cleavage factor greB). Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as greA or greB allows the resumption of elongation from the new 3terminus. GreB releases sequences of up to 9 nucleotides in length (By similarity). belongs to the grea/greb family. 48%25 1 PF03449 GreA_GreB_N%3B 1. TIGR01461%3B greB%3B 1. TIGR00270: conserved hypothetical prote TIGR00270: conserved hypothetical prote%3B~High confidence in function and specificity	gene	gene1458	http://www.ncbi.nlm.nih.gov/gene/?term=azo1424
azo1425	azo1425	htpG	htpG	1555626	1557557	+	probable chaperon protein HtpG	Probable chaperone protein htpG. Homology to htpG of E. coli of 58%25 (sprot|HTPG_ECOLI) Molecular chaperone. Has ATPase activity (By similarity). InterPro: Heat shock hsp90 proteins family (IPR001404)%3BHistidine Kinase-%2C DNA gyraseB-%2C phytochrome-like ATPase (IPR003549 Pfam: Hsp90 protein%3B Histidine Kinase-%2C DNA gyraseB-%2C phytochrome-like ATPase no signal peptide no TMHs mutl: DNA mismatch repair protein Mut%3B~Function unclear	gene	gene1459	http://www.ncbi.nlm.nih.gov/gene/?term=azo1425
azo1426	azo1426	yadQ	yadQ	1557627	1558949	-	putative chloride channel protein	Chloride channel protein%2C yadQ.In E.coli the product of yadQ gene is named EriC.This family of ion channels contains 10 or 12 transmembrane helices. Each protein forms a single pore. It has been shown that some members of this family form homodimers. These proteins contain two CBS domains. Voltage-gated ClC-type chloride channel clcA. Probably acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation as part of the extreme acid resistance (XAR) response (By similarity).%3B~High confidence in function and specificity	gene	gene1460	http://www.ncbi.nlm.nih.gov/gene/?term=azo1426
azo1427	azo1427	mexR	mexR	1559286	1559798	+	putative MarR-family transcriptional regulator	Putative MarR-family transcriptional regulator%2C%3B~Family membership	gene	gene1461	http://www.ncbi.nlm.nih.gov/gene/?term=azo1427
azo1428	azo1428		azo1428	1560019	1560789	+	conserved hypothetical flavoprotein	Conserved hypothetical flavoprotein. Homology to rsc2212 of P. solanacearum of 59%25 (trembl|Q8XXA4). Pfam: Methallo-beta-lactamase no signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1462	http://www.ncbi.nlm.nih.gov/gene/?term=azo1428
azo1429	azo1429		azo1429	1560826	1562004	-	conserved hypothetical protein	Conserved hypothetical protein%2C 63%25 Identitcal (77%25 similarity) to TrEMBL%3BQ8Y0P7%2C65%25 identity to TrEMBL%3BQ7WCK6. Most good homologous hits do not have the same VWA domain represented by this. Has PF05762(IPR008912):VWA domain containing CoxE-like protein%3BThis family is annotated by SMART as containing a VWA type domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria. No Signal peptide or TMH reported present.%3B~Function unclear	gene	gene1463	http://www.ncbi.nlm.nih.gov/gene/?term=azo1429
azo1430	azo1430		azo1430	1562015	1563343	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to TdenA01001626 of Thiobacillus denitrificans of 32%25 (gi|52006684|ref|ZP_00334063.1|(NBCI ENTREZ)). No domains predicted. Signal P reporting signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene1464	http://www.ncbi.nlm.nih.gov/gene/?term=azo1430
azo1431	azo1431		azo1431	1563353	1564201	-	conserved hypothetical protein	TREMBL: Q8Y0P5 : 81%25 identity%2C 90%25 similarity. Probable Cell division protein ftsH homolog (EC 3.4.24.-). InterPro:IPR003593%3B AAA_ATPase. IPR003959%3B AAA_ATPase_centr. Pfam: PF00004%3B AAA%3B ATPase family associated with various SMART: SM00382%3B AAA%3B Absence of transmembrane helices (TMHMM predicted) NON secretory protein ruvB: Holliday junction DNA helicase Ru%3B~Specificity unclear	gene	gene1465	http://www.ncbi.nlm.nih.gov/gene/?term=azo1431
azo1432	azo1432		azo1432	1564276	1564599	+	conserved hypothetical cytochrome c-type protein	Conserved hypothetical cytochrome c-type protein. Homology to rsc0999 of R. solanacearum of 62%25 (trembl|Q8Y0P4). Pfam: Cytochrome c signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1466	http://www.ncbi.nlm.nih.gov/gene/?term=azo1432
azo1433	azo1433		azo1433	1564596	1564937	+	conserved hypothetical cytochrome c-type protein	Conserved hypothetical cytochrome c-type protein. Homology to ebA4874 of Azoarcus_EbN1 of 60%25 (gnl|keqq|eba:ebA4874(KEGG)). Interpro: cytochrome c%2CclassI (IPRoo3088)%3B cytochrome c%2C class IC (IPR008168). Pfam: cytochrome C. singal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene1467	http://www.ncbi.nlm.nih.gov/gene/?term=azo1433
azo1434	azo1434		azo1434	1565036	1565467	-	conserved hypothetical protein	Hypothetical protein similar by 78%25 to RSc1001 [RS04291] [Ralstonia solanacearum(Pseudomonas solanacearum)].TrEMBL Q8Y0P2. No Signal Peptide Reported No TMH Reported.	gene	gene1468	http://www.ncbi.nlm.nih.gov/gene/?term=azo1434
azo1435	azo1435	nth	nth	1565496	1566137	-	DNA-(apurinic or apyrimidinic site) lyase	Endonuclease III . Has both an apurinic and/or apyrimidinic endonuclease activity and a DNA N-glycosylase activity. Incises damaged DNA at cytosines thymines and guanines. Acts on a damaged strand 5 from the damaged site (By similarity). TIGRFAM: comE: comEA protein%3B~High confidence in function and specificity	gene	gene1469	http://www.ncbi.nlm.nih.gov/gene/?term=azo1435
azo1436	azo1436	rnfE2	rnfE2	1566139	1566852	-	probable electron transport complex protein RnfE	Probable electron transport complex protein rnfE. Homology to rnfE of r. capsulata of 49%25 (sprot|RNFE_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. InterPro: RnfA-Nqr electron transport subunit ((IPR003667) Pfam: Rnf-Nqr-subunit%2C membran protein signal peptide 5 TMHs%3B~High confidence in function and specificity	gene	gene1470	http://www.ncbi.nlm.nih.gov/gene/?term=azo1436
azo1437	azo1437	rnfG2	rnfG2	1566849	1567523	-	putative electron transport complex protein RnfG	Putative electron transport complex protein rnfG. Homolog to rnfG of R. capsulata of 36%25 (sprot|RNFG_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1471	http://www.ncbi.nlm.nih.gov/gene/?term=azo1437
azo1438	azo1438	rnfD2	rnfD2	1567520	1568527	-	putative electron transport complex protein RnfD	Putative electron transport complex protein rnfD. Homology to rnfD of R. capsulatus of 33%25 (sprot|RNFD_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase (By similarity). InterPro: NQR2 and RnfD/E related proteins (IPR004338) Pfam: NQR2%2C RnfD%2C RnfE family signal peptide probable 6 TMHs%3B~Family membership	gene	gene1472	http://www.ncbi.nlm.nih.gov/gene/?term=azo1438
azo1439	azo1439	rnfC2	rnfC2	1568524	1570182	-	putative electronen transport complex protein RnfC	Putative electron transport complex protein RnfC. Homology to rnfC of R. capsulatus of 38%25 (sprot|RNFC_RHOCA) Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit (IPR001949)%3B 4Fe-4S ferredoxin%2C iron-sulfur bidning domain (IPR001450) Pfam: Respiratory-chain NADH dehydrogenase%3B 4Fe-4S binding domain no signal peptide no TMHs%3B~Family membership	gene	gene1473	http://www.ncbi.nlm.nih.gov/gene/?term=azo1439
azo1440	azo1440	rnfB2	rnfB2	1570179	1570730	-	probable electron transport complex protein RnfB	Probable electron transport complex protein RnfB. Homology to rnfB of R. capsulatus of 42%25 (sprot|RNFB_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfC. Pfam: 4Fe-4S binding domain signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1474	http://www.ncbi.nlm.nih.gov/gene/?term=azo1440
azo1441	azo1441	rnfA2	rnfA2	1570739	1571323	-	probable electron transport complex promplex protein RnfA	Probable electron transport complex protein RnfA. Homology to rnfA of R. capsultatus of 57%25 (RNFA_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Required for stable existence of rnfB and rnfC. InterPro: RnfA-Nqr electron transport subunit (IPR003667) Pfam: Rnf-Nqr subunit%2C membrane protein no signal peptide 6 TMHs%3B~High confidence in function and specificity	gene	gene1475	http://www.ncbi.nlm.nih.gov/gene/?term=azo1441
azo1442	azo1442		azo1442	1571407	1572036	-	putative nuclease	HNH family of nucleases is found in bacteria%2Cviruses%2C eukaryotes and includes yeast intron 1 protein%2CMutS%2C and bacterial colicins and pyocins. InterPro (IPR003615): HNH nuclease InterPro (IPR002711): HNH endonuclease. Pfam (PF01844): HNH endonuclease.%3B~Family membership	gene	gene1476	http://www.ncbi.nlm.nih.gov/gene/?term=azo1442
azo1443	azo1443		azo1443	1572157	1572723	-	conserved hypothetical NUDIX hydrolase	Conserved hypothetical NUDIX hydrolase. Homology to ne1158 of N. europaea of 58%25 (trembl|Q82VD6) The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family. The family can be divided into a number of subgroups%2C of which MutT anti-mutagenic activity represents only one type%3B most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose%2C GDP- mannose%2C TDP-glucose%2C NADH%2C UDP-sugars%2C dNTP and NTP). InterPro: NUDIX hydrolase (IPR000086) Pfam: MutT-like domain no signal peptide no TMHs%3B~Function unclear	gene	gene1477	http://www.ncbi.nlm.nih.gov/gene/?term=azo1443
azo1444	azo1444	mmoQ	mmoQ	1572893	1574863	+	probable response regulator	Probable response regulator%2C%3B~Family membership	gene	gene1478	http://www.ncbi.nlm.nih.gov/gene/?term=azo1444
azo1445	azo1445		azo1445	1574860	1576590	+	EAL/GGDEF-domain containing signaling protein	EAL/GGDEF-domain containing signaling protein%2C%3B~Conserved hypothetical protein	gene	gene1479	http://www.ncbi.nlm.nih.gov/gene/?term=azo1445
azo1446	azo1446	flhD	flhD	1576751	1577074	+	flagellar transcriptional activator FlhD	Flagellar transcriptional activator%2CflhD. This family consists of several bacterial flagellar transcriptional activator proteins. FlhD combines with FlhC to form a regulatory complex in Escherichia coli. This complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator TrEMBL: Q82SD3 InterPro:IPR007911 Pfam:PF05247 FUNCTION: Transcriptional activator. Involved in the regulation of a number of genetic systems (By similarity). SUBUNIT: Homodimer%3B disulfide-linked. Forms a heterotetrameric complex with two subunits of flhC (By similarity). SUBCELLULAR LOCATION: Cytoplasmic (By similarity). Belongs to the flhD family. No Signal Peptide. No TMH Present.%3B~Family membership	gene	gene1480	http://www.ncbi.nlm.nih.gov/gene/?term=azo1446
azo1447	azo1447	flhC	flhC	1577079	1577633	+	flagellar transcriptional activator FlhC	Flagellar transcriptional activator . This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli%2C this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator. PFAM: PF05280%3B InterPro:IPR007944 No Signal Peptide No TMH%3B~High confidence in function and specificity	gene	gene1481	http://www.ncbi.nlm.nih.gov/gene/?term=azo1447
azo1448	azo1448	motA2	motA2	1577773	1578627	+	flagellar motor protein MotA	Flagellar motor protein MotA (Chemotaxis motA protein). Required for rotation of the flagellar motor. Probable transmembrane proton channel (By similarity). signal peptide probable 4 TMHs%3B~High confidence in function and specificity	gene	gene1482	http://www.ncbi.nlm.nih.gov/gene/?term=azo1448
azo1449	azo1449	motB2	motB2	1578688	1579761	+	flagellar motor protein MotB	Flagellar motor protein MotB (Chemotaxis motB protein. Required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall. Pfam: OmpA family no signal peptide probable 1 TMHs%3B~High confidence in function and specificity	gene	gene1483	http://www.ncbi.nlm.nih.gov/gene/?term=azo1449
azo1450	azo1450	cheY2	cheY2	1579813	1580229	+	putative chemotaxis response regulator	Putative chemotaxis response regulator%2C%3B~Family membership	gene	gene1484	http://www.ncbi.nlm.nih.gov/gene/?term=azo1450
azo1451	azo1451	cheA2	cheA2	1580242	1582332	+	chemotaxis protein cheA	Chemotaxis protein cheA%3B INVOLVED IN THE TRANSMISSION OF SENSORY SIGNALS FROM THE CHEMORECEPTORS TO THE FLAGELLAR MOTORS. CHEA IS AUTOPHOSPHORYLATED%3B IT CAN TRANSFER ITS PHOSPHATE GROUP TO EITHER CHEB OR CHEY. EMBL AE005411%3B AAG56878.1%3B -. AP002559%3B BAB36021.1%3B -. PIR B85802%3B B85802. F90953%3B F90953. InterPro IPR003594%3B ATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR002545%3B CheW. IPR000629%3B DEAD_box. IPR004105%3B H-kinase_dim. IPR005467%3B His_kinase. IPR009082%3B His_kin_homodim. IPR008207%3B Hpt. IPR008208%3B Hpt_N. Pfam PF01584%3B CheW%3B 1. PF02895%3B H-kinase_dim%3B 1. PF02518%3B HATPase_c%3B 1. PF01627%3B Hpt%3B 1. PRINTS PR00344%3B BCTRLSENSOR.%3B~High confidence in function and specificity	gene	gene1485	http://www.ncbi.nlm.nih.gov/gene/?term=azo1451
azo1452	azo1452	cheW2	cheW2	1582399	1582908	+	positive regulator of CheA protein activity	Positive regulator of CheA protein activity%2C%3B~High confidence in function and specificity	gene	gene1486	http://www.ncbi.nlm.nih.gov/gene/?term=azo1452
azo1453	azo1453	tsr	tsr	1582905	1584779	+	putative serine chemoreceptor protein	The Escherichia coli chemoreceptor Tsr mediates tactic responses to serine%2C repellents%2C and changes in temperature. Similar to sprot|MCP1_ECOLI (31%25)and to trembl|Q7NSI6 (36%25). Bacterial chemotactic-signal transducers are proteins that respond to changes in the concentration of attractants and repellents in the environment%2C and transduce a signal from the outside to the inside of the cell. These proteins undergo two covalent modifications: deamidation and reversible methylation. Attractants increase the level of methylation while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Pfam (PF00015): MCPsignal TMHMM reporting two TMH.%3B~Specificity unclear	gene	gene1487	http://www.ncbi.nlm.nih.gov/gene/?term=azo1453
azo1454	azo1454	tcp	tcp	1584776	1587298	+	putative citrate chemoreceptor protein	Salmonella typhimurium shows an attractant response to citrate and a repellent response to phenol%2C and a chemoreceptor mediating these responses has been identified and named Tcp (taxis to citrate and away from phenol). Similar to sprot|MCPC_SALTY (32%25)and to trembl|Q82TM2. InterPro (IPR004089): Bacterial chemotaxis sensory transducer InterPro (IPR003660): HAMP InterPro (IPR004090): Methyl-accepting chemotaxis protein InterPro (IPR001610): PAC InterPro (IPR000014): PAS_domain Pfam (PF00672): HAMP Pfam (PF00015): MCPsignal Pfam (PF00785): PAC Pfam (PF00989):PAS TIGRFAMs (TIGR00229): sensory_box TMHMM reporting two TMH.%3B~Specificity unclear	gene	gene1488	http://www.ncbi.nlm.nih.gov/gene/?term=azo1454
azo1455	azo1455	cheR2	cheR2	1587301	1588254	+	chemotaxis protein methyltransferase	Methylase of chemotaxis methyl-accepting proteins%2C%3B~High confidence in function and specificity	gene	gene1489	http://www.ncbi.nlm.nih.gov/gene/?term=azo1455
azo1456	azo1456	cheB2	cheB2	1588263	1589384	+	protein glutamate-methylesterase	Chemotaxis response regulator protein-glutamate methylesterase%2C catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by cheR.%3B~High confidence in function and specificity	gene	gene1490	http://www.ncbi.nlm.nih.gov/gene/?term=azo1456
azo1457	azo1457		azo1457	1589532	1591208	+	methyl accepting chemotaxis protein	Methyl-accepting chemotaxis protein%2C%3B~Specificity unclear	gene	gene1491	http://www.ncbi.nlm.nih.gov/gene/?term=azo1457
azo1458	azo1458	cheV1	cheV1	1591411	1592376	+	probable chemotaxis protein CheV-like	Probable chemotaxis protein%2C CheW. IPR001789%3B Response_reg. Pfam: PF01584%3B CheW. PF00072%3B Response_reg. SMART: SM00260%3B CheW. SM00448%3B REC. Chemotaxis protein cheV. CHEMOTAXIS INVOLVES BOTH A PHOSPHORYLATION-DEPENDENT EXCITATION AND A METHYLATION-DEPENDENT ADAPTATION. CHEV AND CHEW FUNCTION TOGETHER TO COUPLE CHEA ACTIVATION TO METHYL-ACCEPTING CHEMOTAXIS PROTEIN RECEPTOR STATUS AND POSSIBLE CHEA-DEPENDENT PHOSPHORYLATION OF CHEV CONTRIBUTES TO ADAPTATION.%3B~High confidence in function and specificity	gene	gene1492	http://www.ncbi.nlm.nih.gov/gene/?term=azo1458
azo1459	azo1459	cheV2	cheV2	1592386	1593342	+	probable chemotaxis protein CheV-like	Probable chemotaxis protein%2C CheW. IPR001789%3B Response_reg. Pfam: PF01584%3B CheW. PF00072%3B Response_reg. SMART: SM00260%3B CheW. SM00448%3B REC. Chemotaxis protein cheV. CHEMOTAXIS INVOLVES BOTH A PHOSPHORYLATION-DEPENDENT EXCITATION AND A METHYLATION-DEPENDENT ADAPTATION. CHEV AND CHEW FUNCTION TOGETHER TO COUPLE CHEA ACTIVATION TO METHYL-ACCEPTING CHEMOTAXIS PROTEIN RECEPTOR STATUS AND POSSIBLE CHEA-DEPENDENT PHOSPHORYLATION OF CHEV CONTRIBUTES TO ADAPTATION.%3B~High confidence in function and specificity	gene	gene1493	http://www.ncbi.nlm.nih.gov/gene/?term=azo1459
azo1460	azo1460	cheY3	cheY3	1593373	1593774	+	chemotaxis response regulator	Chemotaxis response regulator%2C Response_reg. Pfam: PF00072%3B Response_reg. SMART: SM00448%3B REC. Chemotaxis protein cheY. Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. In its active (phosphorylated or acetylated) form cheY exhibits enhanced binding to a switch component fliM at the flagellar motor which induces a change from counterclockwise to clockwise flagellar rotation (By similarity).%3B~High confidence in function and specificity	gene	gene1494	http://www.ncbi.nlm.nih.gov/gene/?term=azo1460
azo1461	azo1461	cheZ	cheZ	1593809	1594702	+	chemotaxis protein CheZ	Chemotaxis protein CheZ%2C%3B~High confidence in function and specificity	gene	gene1495	http://www.ncbi.nlm.nih.gov/gene/?term=azo1461
azo1462	azo1462	cheA3	cheA3	1594779	1596674	+	chemotaxis protein cheA	Chemotaxis histidine kinase protein%2CATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR002545%3B CheW. IPR004105%3B H-kinase_dim. IPR005467%3B His_kinase. IPR008207%3B Hpt. IPR008208%3B Hpt_N. Pfam: PF01584%3B CheW. PF02895%3B H-kinase_dim. PF02518%3B HATPase_c. PF01627%3B Hpt. SMART: SM00260%3B CheW. SM00387%3B HATPase_c. SM00073%3B HPT. Chemotaxis protein cheA (EC 2.7.3.-). INVOLVED IN THE TRANSMISSION OF SENSORY SIGNALS FROM THE CHEMORECEPTORS TO THE FLAGELLAR MOTORS. CHEA IS AUTOPHOSPHORYLATED%3B IT CAN TRANSFER ITS PHOSPHATE GROUP TO EITHER CHEB OR CHEY.%3B~High confidence in function and specificity	gene	gene1496	http://www.ncbi.nlm.nih.gov/gene/?term=azo1462
azo1463	azo1463		azo1463	1596794	1597105	+	Hypothetical protein	Hypothetical protein%2C 31%25 identity (47%25 similarity) to TrEMBL:Q8KLF6 Coils2 program reports the presence of coiled-coil.	gene	gene1497	http://www.ncbi.nlm.nih.gov/gene/?term=azo1463
azo1464	azo1464	tal	tal	1597121	1598236	-	putative transaldolase	Transaldolase%2C Tal%2C invovled in the pentose phosphate pathway%2C nonoxidative part. This enzyme is important for the balance of metabolites in the pentose-phosphate pathway.Belongs to the transaldolase family%2Csubfamily 2. 37%25 Tal_mycobact.IPR001585%3B Transaldolase. Pfam:PF00923%3B Transaldolase%3B 1. TIGRFAMs:TIGR00876%3B tal_mycobact%3B 1.%3B~High confidence in function and specificity	gene	gene1498	http://www.ncbi.nlm.nih.gov/gene/?term=azo1464
azo1465	azo1465		azo1465	1598208	1598990	-	hypothetical protein	tRNA pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-65 in transfer RNAs%3B~High confidence in function and specificity%3B~ORF3	gene	gene1499	http://www.ncbi.nlm.nih.gov/gene/?term=azo1465
azo1466	azo1466		azo1466	1599073	1599657	-	putative superoxide dismutase	SodB: Superoxide dismutase [Fe] (EC 1.15.1.1).Catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. 76%25 SODismutase. Pfam:PF02777%3B Sod_Fe_C%3B 1. PF00081%3B Sod_Fe_N%3B 1.%3B~High confidence in function and specificity	gene	gene1500	http://www.ncbi.nlm.nih.gov/gene/?term=azo1466
azo1467	azo1467	xseA	xseA	1599814	1601193	-	Exodeoxyribonuclease VII	Probable exodeoxyribonuclease VII large subunit . Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides which are then degraded further into small acid-soluble oligonucleotides (By similarity). TIGRFAM: xseA: exodeoxyribonuclease VII large.%3B~High confidence in function and specificity	gene	gene1501	http://www.ncbi.nlm.nih.gov/gene/?term=azo1467
azo1468	azo1468	exbB3	exbB3	1601484	1602092	+	conserved hypothetical biopolymer transport protein ExbB	conserved hypothetical biopolymer transport protein ExbB. Homology to exbB of B. pertussis. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. Pfam: MotA/TolQ/ExbB proton channel family no signal peptide probable 3 TMHS%3B~Family membership	gene	gene1502	http://www.ncbi.nlm.nih.gov/gene/?term=azo1468
azo1469	azo1469	exbD4	exbD4	1602104	1602526	+	putative biopolymer transport protein ExbD	Putative biopolymer transport exbD2 protein. Homology to exbD2 of V. choloera of 31%25 ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership	gene	gene1503	http://www.ncbi.nlm.nih.gov/gene/?term=azo1469
azo1470	azo1470	lpxK	lpxK	1602530	1603555	+	probable tetraacyldisaccharide 4'-kinase	Probable tetraacyldisaccharide 4-kinase. Homology to lpxK of E. coli of 41%25 (sprot|LPXK_ECOLI). Transfers the gamma-phosphate of ATP to the 4-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 14-bis-phosphate (lipid IVA) (By similarity). InterPro: Tetraacyldisaccharide-1-P 4-kinase(IPR003758) Tigrfam: lpxK: tetraacyldisaccharide 4-kinase Pfam: Tetraacyldisaccharide-1-P 4-kinase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1504	http://www.ncbi.nlm.nih.gov/gene/?term=azo1470
azo1471	azo1471	ycaR	ycaR	1603536	1603724	+	conserved hypothetical protein	Putative inner membrane protein [ycaR]%2C 66%25 identity (85%25 similarity) to SwissProt%3BP75844(E.coli) and 65%25 identity to TrEMBL%3BQ7CQT7. Has PF03966:Protein of unknown function (DUF343)%3BThis family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Signal Peptide or TMH not present.%3B~Function unclear	gene	gene1505	http://www.ncbi.nlm.nih.gov/gene/?term=azo1471
azo1472	azo1472	kdsB	kdsB	1603733	1604506	+	probable 3-deoxy-manno-octulosonate cytidylyltransferase	Probable 3-deoxy-manno-octulosonate cytidylyltransferase. Homology to kdsB of E. coli of 57%25 (sprot|KDSB_ECOLI). Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria (By similarity). InterPro: 3-deoxy-D-manno-octulosonate cytidylyltransferase (IPR004528)%3B cytidylyltransferase (CMP-NeuAc synthetase) (IPR003329) Tigrfam: kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase Pfam: Cytidylyltransferase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1506	http://www.ncbi.nlm.nih.gov/gene/?term=azo1472
azo1473	azo1473	adk	adk	1604626	1605279	+	adenylate kinase	Adenylate kinase (ATP-AMP transphosphorylase). InterPro: Adenylate kinase%3B~High confidence in function and specificity	gene	gene1507	http://www.ncbi.nlm.nih.gov/gene/?term=azo1473
azo1474	azo1474	pfkA	pfkA	1605395	1606660	+	putative 6-phosphofructokinase	6-phosphofructokinase 1(Phosphofructokinase 1) (Phosphohexokinase 1) (ATP-PFK)%2C PfkA. Play a key control step of glycolysis. Catalytic activity: atp + d-fructose 6-phosphate %3D adp + d- fructose 1%2C6-bisphosphate. Belongs to the phosphofructokinase family. 26%25 Ppfruckinase.InterPro: Phosphofructokinase Pfam:PF00365%3B PFK%3B 1.%3B~High confidence in function and specificity	gene	gene1508	http://www.ncbi.nlm.nih.gov/gene/?term=azo1474
azo1475	azo1475	ggt	ggt	1606678	1608399	+	Ggt protein	Gamma-glutamyltranspeptidase catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid%2C a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle%2C a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification. Similar to trembl|Q88H30 (43%25)and to trembl|Q8UJH0 (36%25). TIGRfam (TIGR00066): Gamma-glutamyltranspeptidase Pfam (PF01019): Gamma-glutamyltranspeptidase SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene1509	http://www.ncbi.nlm.nih.gov/gene/?term=azo1475
azo1476	azo1476		azo1476	1608393	1610963	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein	gene	gene1510	http://www.ncbi.nlm.nih.gov/gene/?term=azo1476
azo1477	azo1477	drgA	drgA	1611123	1611704	-	probable NAD(P)H quinone oxidoreductase	Putative NAD(P)H oxidoreductase HI1544 (EC 1.6.5.2 ). trembl:Q88J60: 64%25 identity%3B 80%25 similarity This family consists of bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC: 1.6.5.2 that catalyses the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species [1]. This enzyme uses a FAD co-factor InterPro:IPR003680%3B NADHdh_2. Pfam:PF02525%3B Flavodoxin_2 SignalP predicted signal peptide present No transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity	gene	gene1511	http://www.ncbi.nlm.nih.gov/gene/?term=azo1477
azo1478	azo1478		azo1478	1611764	1612186	-	probable MerR-family transcriptional regulator	Probable MerR-family transcriptional regulator%2C%3B~Family membership	gene	gene1512	http://www.ncbi.nlm.nih.gov/gene/?term=azo1478
azo1479	azo1479	gltX2	gltX2	1612279	1613682	+	Glutamate-tRNA ligase	Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS). gltX_bact: glutamyl-tRNA synthetase%3B~High confidence in function and specificity	gene	gene1513	http://www.ncbi.nlm.nih.gov/gene/?term=azo1479
azo1480	azo1480		azo1480	1613749	1614060	-	probable nitrogen regulatory protein P-II	Probable Nitrogen regulatory protein P-II 1. Could be involved in the regulation of nitrogen fixation.Belongs to the P(II) protein family.55%25 similarity with Methanothermobacter thermautotrophicus%2CTrEMBL:O26758 Pfam:PF00543%2C InterPro:IPR002332%2CIPR002187 No Signal peptide present. No TMH reported.	gene	gene1514	http://www.ncbi.nlm.nih.gov/gene/?term=azo1480
azo1481	azo1481		azo1481	1614063	1615001	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ttc139 of T. termophilus of 49%25 (trembl|Q72LC0). no domains no singal peptide 8 TMHs%3B~Conserved hypothetical protein	gene	gene1515	http://www.ncbi.nlm.nih.gov/gene/?term=azo1481
azo1482	azo1482	yfcK	yfcK	1615045	1616952	-	D-amino-acid oxidase	Conserved hypothetical protein[putative to yfcK]%2C39%25 identity (50%25 similarity) to SwissProt%3BQ9HYF0. SwissProt%3BQ8FFH0(34%25 identity) High homology suggesting to ycfK protein. Has PF01266%3BFAD dependent oxidoreductase%3B(IPR006076 Fad_oxred):This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5%2C Sarcosine oxidase beta subunit EC:1.5.3.1%2C D-alanine oxidase EC:1.4.99.1%2C D-aspartate oxidase EC:1.4.3.1. Has PF05430(IPR008471):Protein of unknown function (DUF752)%3BThis family contains several uncharacterised bacterial proteins with no known function. No signal peptide or TMH present.%3B~Specificity unclear	gene	gene1516	http://www.ncbi.nlm.nih.gov/gene/?term=azo1482
azo1483	azo1483		azo1483	1617116	1619113	-	5'-nucleotidase	Putative 5'-nucleotidase Has Signal Peptide. Has PF02872%2C 5'-nucleotidase%2C C-terminal domain%3B IPR008334%2C 5'-Nucleotdase_C%3B 5'-nucleotidases are enzymes that catalyze the hydrolysis ofphosphate esterified at carbon 5' of the ribose and deoxyribose portions of nucleotide molecules. 5'-nucleotidase is a ubiquitous enzyme found in a wide variety of species and which occurs in different cellular locations. The extracellular 5'-nucleotidase from mammals and electric ray isozyme is a homodimeric disulphide-bonded glycoprotein attached to the membrane by a GPI-anchor%2C and requires zinc for its activity. Has PF00149%2CCalcineurin-like phosphoesterase%3B IPR004843%2C M-pesterase%3B This family includes a diverse range of phosphoesterases%2Cincluding protein phosphoserine phosphatases%2Cnucleotidases%2C sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD P13457 or yeast MRE11 P32829. The most conserved regions in this superfamily centre around the metal chelating residues.%3B~High confidence in function and specificity	gene	gene1517	http://www.ncbi.nlm.nih.gov/gene/?term=azo1483
azo1484	azo1484	nucH	nucH	1619180	1622011	-	putative extracellular nuclease	Putative extracellular nuclease. Homology to nucH of A. hydrophila of 33%25 (trembl|Q44070) Tigrfam: xth: exodeoxyribonuclease III (xth) Pfam: Endonuclease/ Exonuclease/ Phoshatase family singal peptide no TMHs%3B~Family membership	gene	gene1518	http://www.ncbi.nlm.nih.gov/gene/?term=azo1484
azo1485	azo1485		azo1485	1622218	1622907	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology ebA4071 of Azoarcus sp. EbN1 of 61%25 (gnl|keqq|eba:ebA4071(KEGG)). Has PF06930%2C Protein of unknown function (DUF1282)%3B IPR009698%3B This family consists of several hypothetical proteins of around 200 residues in length. The function of this family is unknown although a number of family members are thought to be putative membrane proteins. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene1519	http://www.ncbi.nlm.nih.gov/gene/?term=azo1485
azo1486	azo1486		azo1486	1622923	1624122	-	conserved hypothetical signaling protein	Conserved hypothetical signaling protein. Homology to TdenA01000705 of Thiobacillus denitrificans of 61%25 (gi|52008401|ref|ZP_00335778.1|(NBCI ENTREZ)). Pfam: PF01590 GAF domain. PF00563 EAL domain. No signal peptide. No TMHs.%3B~Conserved hypothetical protein	gene	gene1520	http://www.ncbi.nlm.nih.gov/gene/?term=azo1486
azo1487	azo1487	lysS	lysS	1624335	1625837	-	lysyl-tRNA synthetase	Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS).%3B~High confidence in function and specificity	gene	gene1521	http://www.ncbi.nlm.nih.gov/gene/?term=azo1487
azo1488	azo1488		azo1488	1625995	1626372	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03003756 of Dechloromonas aromatica of 53%25 (gi|41722684|ref|ZP_00149673.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.	gene	gene1522	http://www.ncbi.nlm.nih.gov/gene/?term=azo1488
azo1489	azo1489		azo1489	1626384	1626902	-	conserved hypothetical protein	Hypothetical protein CT2219. SPROT:Q8KAE4: 65%25 identity%3B 78%25 similarity. TREMBL:Q7NS63: 60%25 identity%2C 72%25 similarity putative ACR related to the C-terminal domain of histone macroH2A1 This domain is found in a number of protein associated with DNA and/or RNA unwinding InterPro%3B IPR002589%3B A1pp. Pfam%3B PF01661%3B A1pp%3B 1. SMART%3B SM00506%3B A1pp non-secretory protein with no signal peptide (SignalP predicted). No transmembrane helices (TMHMM predicted)%3B~Function unclear	gene	gene1523	http://www.ncbi.nlm.nih.gov/gene/?term=azo1489
azo1490	azo1490		azo1490	1627018	1630287	-	conserved hypothetical signaling protein	Conserved hypothetical signaling protein. Homology to ebA6472 Azoarcus sp. EbN1 of 36%25 (gnl|keqq|eba:ebA6472(KEGG)). InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. IPR001789 Response_reg. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF01590 GAF domain. PF00563 EAL domain. PF00072 Response_reg. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain. No signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene1524	http://www.ncbi.nlm.nih.gov/gene/?term=azo1490
azo1491	azo1491	divK	divK	1630292	1630687	-	probable polar differentiation response regulator	Probable polar differentiation response regulator%2C%3B~Family membership	gene	gene1525	http://www.ncbi.nlm.nih.gov/gene/?term=azo1491
azo1492	azo1492	divJ	divJ	1630684	1632525	-	putative histidine protein kinase	Putative histidine protein kinase%2C%3B~Specificity unclear	gene	gene1526	http://www.ncbi.nlm.nih.gov/gene/?term=azo1492
azo1493	azo1493		azo1493	1632830	1634692	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Avar03001212 of Anabaena variabilis of 34%25 (gi|53765559|ref|ZP_00161954.2|(NBCI ENTREZ)). Pfam: Peptidase family M48. 2 TMHs. no signal peptide%3B~Conserved hypothetical protein	gene	gene1527	http://www.ncbi.nlm.nih.gov/gene/?term=azo1493
azo1494	azo1494		azo1494	1634819	1637611	-	conserved hypothetical protein	Similarity to hypothetical protein in C. violaceum.	gene	gene1528	http://www.ncbi.nlm.nih.gov/gene/?term=azo1494
azo1495	azo1495		azo1495	1637617	1638315	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV0860 of Chromobacterium violaceum of 50%25 (trembl: Q7NZR1). No domains predicted. No TMHs. No signal peptide.	gene	gene1529	http://www.ncbi.nlm.nih.gov/gene/?term=azo1495
azo1496	azo1496		azo1496	1638326	1639639	-	Hypothetical protein	Conserved Hypothetical protein Signal Peptide present. Has Prosite PS00380%3B RHODANESE_1%3B Rhodanese (thiosulfate sulfurtransferase) (EC 2.8.1.1)is an enzyme which catalyzes the transfer of the sulfane atom of thiosulfate to cyanide%2C to form sulfite and thiocyanate. In vertebrates%2C rhodanese is a mitochondrial enzyme of about 300 amino-acid residues involved in forming iron-sulfur complexes and cyanide detoxification. A cysteine residue takes part in the catalytic mechanism.	gene	gene1530	http://www.ncbi.nlm.nih.gov/gene/?term=azo1496
azo1497	azo1497	prfB	prfB	1639694	1640815	-	peptide chain release factor	Peptide chain release factor 2 (RF-2). Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.%3B~High confidence in function and specificity	gene	gene1531	http://www.ncbi.nlm.nih.gov/gene/?term=azo1497
azo1498	azo1498		azo1498	1640905	1641321	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein Homology to an orf of C. violaceum of 41%25 (trembl|Q7NSF3(SRS)) No domains predicted Signal Peptide present. TMHMM2 reporting 2 TMH's present.%3B~Conserved hypothetical protein	gene	gene1532	http://www.ncbi.nlm.nih.gov/gene/?term=azo1498
azo1499	azo1499		azo1499	1641332	1641760	-	probable HIT family protein	TREMBL:Q8XSIO: 58%25 identity%2C 73%25 similarity Hypothetical HIT-like protein Rv0759c/MT0784/Mb0782c. InterPro:IPR001310%3B HIT. Pfam: PF01230%3B HIT%3B 1. PRINTS: PR00332%3B HISTRIAD InterPro: HIT (Histidine triad) family hupD: hydrogenase expression/formation pr%3B~Family membership	gene	gene1533	http://www.ncbi.nlm.nih.gov/gene/?term=azo1499
azo1500	azo1500		azo1500	1641939	1642796	+	hypothetical secreted protein	Hypothetical secreted protein. Weak homology with hits in the database. Signal Peptide present. No domains predicted. No TMHs	gene	gene1534	http://www.ncbi.nlm.nih.gov/gene/?term=azo1500
azo1501	azo1501		azo1501	1642934	1643425	+	hypothetical protein	Hypothetical protein. No homology to the data bank. Has 2 copies of SMART%3BSM00671%2C SEL1%2C Sel1-like repeats.These represent a subfamily of TPR (tetratricopeptide repeat) sequences. No TMHs. No signal peptide.	gene	gene1535	http://www.ncbi.nlm.nih.gov/gene/?term=azo1501
azo1502	azo1502		azo1502	1643422	1643817	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 3 TMHs	gene	gene1536	http://www.ncbi.nlm.nih.gov/gene/?term=azo1502
azo1503	azo1503		azo1503	1644105	1644740	-	putative two-component response regulator	Putative two-component response regulator%2C%3B~Family membership	gene	gene1537	http://www.ncbi.nlm.nih.gov/gene/?term=azo1503
azo1504	azo1504	moxY	moxY	1644737	1646212	-	putative two-component sensor histidine kinase	Putative two-component sensor histidine kinase%2C%3B~Specificity unclear	gene	gene1538	http://www.ncbi.nlm.nih.gov/gene/?term=azo1504
azo1505	azo1505	recJ	recJ	1646272	1647963	-	single-stranded-DNA-specific exonuclease	Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-). SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE. REQUIRED FOR MANY TYPES OF RECOMBINATIONAL EVENTS ALTHOUGH THE STRINGENCY OF THE REQUIREMENT FOR RECJ APPEARS TO VARY WITH THE TYPE OF RECOMBINATIONAL EVENT MONITORED AND THE OTHER RECOMBINATION GENE PRODUCTS WHICH ARE AVAILABLE. InterPro: Single-stranded-DNA-specific exonuclease RecJ. recJ: single-stranded-DNA-specific exo.%3B~High confidence in function and specificity	gene	gene1539	http://www.ncbi.nlm.nih.gov/gene/?term=azo1505
azo1506	azo1506		azo1506	1647960	1649036	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV2476 of C.violaceum of 38%25 (tremble:Q7NV68) No domains predicted. No signal peptide or TMH present.	gene	gene1540	http://www.ncbi.nlm.nih.gov/gene/?term=azo1506
azo1507	azo1507		azo1507	1649253	1651382	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to cv1738 of C. violaceum (sprot|YH38_CHRVO) InterPro: Uncharacterized protein family UPF0004 (IPR005839) no signal peptide no TMHs TIGR00089: conserved hypothetical prote	gene	gene1541	http://www.ncbi.nlm.nih.gov/gene/?term=azo1507
azo1508	azo1508		azo1508	1651391	1651927	-	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domaine predicted. No signal peptide. 2 TMHs	gene	gene1542	http://www.ncbi.nlm.nih.gov/gene/?term=azo1508
azo1509	azo1509	lolE1	lolE1	1652224	1653480	+	putative lipoprotein transporter%2C permease protein	Putative lipoprotein transporter%2C permease protein. Homology to lolE of E. coli of 36%25 (sprot|LOLE_ECOLI). Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and of lolA (By similarity). Pfam: Predicted permease signal peptide 3 TMHs%3B~High confidence in function and specificity	gene	gene1543	http://www.ncbi.nlm.nih.gov/gene/?term=azo1509
azo1510	azo1510	lolD	lolD	1653473	1654180	+	lipoprotein releasing system ATP-binding protein	Lipoprotein releasing system ATP-binding protein lolD. Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and of lolA. Similar to TREMBL:Q82VL9%3B TREMBL:Q8Y0C6%3B SWISSPROT:P75957 (58%25 identity). Pfam (PF00005): ABC transporter. TC (3.A.1.125): The Lipoprotein Translocase (LPT) Family.%3B~High confidence in function and specificity	gene	gene1544	http://www.ncbi.nlm.nih.gov/gene/?term=azo1510
azo1511	azo1511		azo1511	1654177	1654722	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ne0829 of N. europaea of 46%25 (trembl|Q82W66(SRS)) No domains predicted No signal peptide 4 TMHs%3B~Conserved hypothetical protein	gene	gene1545	http://www.ncbi.nlm.nih.gov/gene/?term=azo1511
azo1512	azo1512	comA	comA	1654821	1657130	+	putative DNA uptake/competence protein	Competence protein comA. Essential for natural transformation. Could be a transporter involved in DNA uptake. InterPro: DNA internalization-related competence protein ComEC/Rec2 function: transporter activity TREMBL:Q82SD2: 38%25 identity%2C50%25 similarity. InterPro:IPR001279%3B Blactmase-like. IPR004477%3B ComEC_N-term. IPR004797%3B ComEC_Rec2. Pfam PF03772%3B Competence%3B 1. PF00753%3B Lactamase_B%3B 1. TIGRFAMs:TIGR00360%3B ComEC_N-term%3B 1. TIGR00361%3B ComEC_Rec2%3B ComEC_Rec2: DNA internalization-relate TMHMM predicted 8 transmembrane helices%3B~High confidence in function and specificity	gene	gene1546	http://www.ncbi.nlm.nih.gov/gene/?term=azo1512
azo1513	azo1513		azo1513	1657199	1658110	+	probable hydrolase	TREMBL:Q8XZ32: 54%25 identity%2C 66%25 similarity Probable Hypothetical protein Rv2715/MT2788/Mb2734. InterPro:IPR000073%3B A/b_hydrolase. IPR003089%3B AB_hydrolase. IPR000379%3B Ser_estrs. Pfam PF00561%3B Abhydrolase_1%3B 1 InterPro: Alpha/beta hydrolase fold Mtu_fam_11: Mycobacterium tuberculosis pa%3B~Family membership	gene	gene1547	http://www.ncbi.nlm.nih.gov/gene/?term=azo1513
azo1514	azo1514		azo1514	1658292	1659710	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS04633 of R.solanacearum of 73%25 (tremble:Q8Y0C3). Has PF04169(IPR007297)%3BDomain of unknown function (DUF404)%3BThis is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF403 (IPR007296) and DUF407 (IPR007302). Has PF04174%3BDomain of unknown function (DUF407)%3BThis is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF403 (IPR007296) and DUF404 (IPR007297). No signal Peptide or TMH present.	gene	gene1548	http://www.ncbi.nlm.nih.gov/gene/?term=azo1514
azo1515	azo1515		azo1515	1659734	1660678	+	conserved hypothetical protein	Conserved Hypothetical protein%2C 57%25 identity to TrEMBL%3BQ8Y0C2 Has PF04168%3B(IPR00729)Bacterial domain of unknown function (DUF403):This is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF404 (IPR007297) and DUF407 (IPR007302). No Signal peptide or TMH reported Present.%3B~Function unclear	gene	gene1549	http://www.ncbi.nlm.nih.gov/gene/?term=azo1515
azo1516	azo1516	yjeQ	yjeQ	1660725	1661654	-	probable GTPase	Probable GTPase engC precursor (EC 3.6.1.-). TREMBL:Q7VVH5: 52%25 identity%2C 64%25 similarity. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (By similarity). InterPro IPR004881:DUF258. Pfam:PF03193%3B DUF258%3B acid_CoA_mut_C: methylmalonyl-CoA muta Non secretory protein (Signal P predicted) No transmembrane helices.%3B~Specificity unclear	gene	gene1550	http://www.ncbi.nlm.nih.gov/gene/?term=azo1516
azo1517	azo1517		azo1517	1661656	1662909	-	putative metalloprotease	Putative metalloprotease. Homology to ste24 of S. cerevisiae of 32%25 (sprot|ST24_YEAST). CAAX prenyl protease 1 (EC 3.4.24.84) (Prenyl protein-specific endoprotease 1) (PPSEP 1) (A-factor converting enzyme). Proteolytically removes the C-terminal three residues of farnesylated A-factor mating pheromone. Also acts to cleave the N-terminal extension of the pheromone. probable signal peptide probable 7 TMHs%3B~Family membership	gene	gene1551	http://www.ncbi.nlm.nih.gov/gene/?term=azo1517
azo1518	azo1518	orn	orn	1663104	1663652	+	oligoribonuclease	Oligoribonuclease (EC 3.1.-.-). 3-to-5 exoribonuclease specific for small oligoribonucleotides (By similarity).%3B~High confidence in function and specificity	gene	gene1552	http://www.ncbi.nlm.nih.gov/gene/?term=azo1518
azo1519	azo1519	pgi	pgi	1663676	1665385	-	putative glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase 1(EC 5.3.1.9) (GPI 1)(Phosphoglucose isomerase 1)(PGI 1)(Phosphohexose isomerase 1) (PHI 1). Enzyme involved in glycolysis and in gluconeogenesis.Catalytic activity: d-glucose 6-phosphate %3D d-fructose 6- phosphate.Belongs to the gpi family. 39%25 G6P_Isomerase. Pfam:PF00342%3B PGI%3B 1.%3B~High confidence in function and specificity	gene	gene1553	http://www.ncbi.nlm.nih.gov/gene/?term=azo1519
azo1520	azo1520		azo1520	1665304	1666938	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV1748 of C. violaceum of 32%25 (trembl|Q7NX80(SRS)). No domains predicted. No signal peptide 11 TMHs%3B~Conserved hypothetical protein	gene	gene1554	http://www.ncbi.nlm.nih.gov/gene/?term=azo1520
azo1521	azo1521	rpmE	rpmE	1667147	1667365	-	50S ribosomal protein L31	50S ribosomal protein L31.%3B~Family membership	gene	gene1555	http://www.ncbi.nlm.nih.gov/gene/?term=azo1521
azo1522	azo1522		azo1522	1667410	1668510	+	conserved hypothetical protein	putative TIM-barrel protein%3B~Specificity unclear	gene	gene1556	http://www.ncbi.nlm.nih.gov/gene/?term=azo1522
azo1523	azo1523	yggH	yggH	1668539	1669234	+	tRNA (guanine-N7-)-methyltransferase	tRNA (guanine-N(7)-)-methyltransferase%2C 29%25 identity to SwissProt%3BQ8EBX8. SwissProt%3BQ8Y1I7(25%25 Identity)%2CQ8FE22(25%25 identity). Has PF02390%2CMethyltransf_4%2CPutative methyltransferase%3BIPR003358%3B This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.	gene	gene1557	http://www.ncbi.nlm.nih.gov/gene/?term=azo1523
azo1524	azo1524		azo1524	1669231	1669941	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ct227 of C. tepidum of 32%25 (trembl|Q8KA93). Pfam: SEC-C motif This motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain. no TMHs	gene	gene1558	http://www.ncbi.nlm.nih.gov/gene/?term=azo1524
azo1525	azo1525		azo1525	1669934	1670281	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to PA3209 of Pseudomonas aeruginosa of 43%25 (trembl:Q9HZ31). Has PF03692%2C Uncharacterised protein family (UPF0153)%3B IPR005358%3BThis family of proteins contain 8 conserved cysteines that may form a metal binding site. The function of these proteins is unknown but might be an Fe-S cluster as part of an oxidoreductase complex. No signal peptide. No TMHs	gene	gene1559	http://www.ncbi.nlm.nih.gov/gene/?term=azo1525
azo1526	azo1526		azo1526	1670316	1670681	+	probable Ferredoxin	TREMBL:Q8XH16: 56%25 identity%2C 66%25 similarity. SPROT:P71300: 53%25 identity%2C 67%25 similarity Hypothetical protein ykgJ%3B This family of proteins contain 8 conserved cysteines that may form a zinc binding site. The function of these proteins is unknown InterPro:IPR005358%3B UPF0153. Pfam: PF03692%3B UPF0153 No signal peptide. No transmembrane helices%3B~High confidence in function and specificity	gene	gene1560	http://www.ncbi.nlm.nih.gov/gene/?term=azo1526
azo1527	azo1527		azo1527	1670701	1671576	-	putative ATP adenylyltransferase	Function unclear	gene	gene1561	http://www.ncbi.nlm.nih.gov/gene/?term=azo1527
azo1528	azo1528		azo1528	1671664	1671888	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to XAC2816 of Xanthomonas axonopodis of 52%25 (trembl:Q8PIS9). No domains predicted. No TMHs. No signal peptide.	gene	gene1562	http://www.ncbi.nlm.nih.gov/gene/?term=azo1528
azo1529	azo1529		azo1529	1671902	1673644	-	NAD-binding domain of the Kef-type K+ transport system fused to a uncharacterized conserved domain	42%25 K+channel_pore.IPR003148%3B TrkA_N. Pfam:PF02254%3B TrkA_N%3B 2. TMhelix:3%3B~Function unclear	gene	gene1563	http://www.ncbi.nlm.nih.gov/gene/?term=azo1529
azo1530	azo1530		azo1530	1673655	1674038	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to AQ_302 of Aquifex aeolicus of 38%25 (trembl|O66649). No domains predicted. No signal peptide 4 TMHs%3B~Conserved hypothetical protein	gene	gene1564	http://www.ncbi.nlm.nih.gov/gene/?term=azo1530
azo1531	azo1531		azo1531	1674393	1675244	+	hypothetical secreted protein	Hypothetical secreted protein. Weak homology with hits in the database. Signal Peptide present. No TMHs. No domains predicted	gene	gene1565	http://www.ncbi.nlm.nih.gov/gene/?term=azo1531
azo1532	azo1532		azo1532	1675220	1675543	-	conserved hypothetical protein	Hypothetical protein%2C 65%25 Identity (77%25 similarity) to SwissProt%3B Q7NS67.56%25 identity to SwissProt%3BQ8Y2R5. No domains%2C repeats%2C motifs or features present.	gene	gene1566	http://www.ncbi.nlm.nih.gov/gene/?term=azo1532
azo1533	azo1533	acnA	acnA	1675840	1678551	-	probable aconitate hydratase	Probable Aconitate hydratase. Homology to acnA of B. japonicum of 52%25 (sprot|ACON_BRAJA) CATALYTIC ACTIVITY: Citrate %3D cis-aconitate + H(2)O. InterPro: Aconitate hydratase N-terminal (IPR001030)%3B Aconitate hydroatse%2C C-terminal (IPR000573) Tigrfam: h_aconitase: homoaconitase Pfam: Aconitase family%3B Aconitase C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1567	http://www.ncbi.nlm.nih.gov/gene/?term=azo1533
azo1534	azo1534	acnB	acnB	1678824	1681421	+	aconitate hydratase	Aconitate hydratase. Homology to acnB of E. coli of 73%25 (sprot|ACO2_ECOLI) CATALYTIC ACTIVITY: Citrate %3D cis-aconitate + H(2)O. Tirfam: acnB: aconitate hydratase 2 Pfam: aconitase family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1568	http://www.ncbi.nlm.nih.gov/gene/?term=azo1534
azo1535	azo1535		azo1535	1681615	1684014	+	conserved hypothetical signaling protein	Conserved hypothetical signaling protein. Homology to ebA3785 of Azoarcus sp. EbN1 of 40%25 (gnl|keqq|eba:ebA3785(KEGG)). Pfam: PF00990 GGDEF domain. PF01590 GAF domain. PF00563 EAL domain. TIGRFAM:TIGR00254 putative diguanylate cyclase (GGDEF) domain. No signal peptide. No TMHs.%3B~Conserved hypothetical protein	gene	gene1569	http://www.ncbi.nlm.nih.gov/gene/?term=azo1535
azo1536	azo1536		azo1536	1684130	1684609	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bd2668 of B. bacteriovorus of 53%25 (tremblnew|CAE80459). no domains signal peptide no TMHs%3B~Conserved hypothetical protein	gene	gene1570	http://www.ncbi.nlm.nih.gov/gene/?term=azo1536
azo1537	azo1537		azo1537	1684668	1685216	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Raeut03004638 of Ralstonia eutropha of 37%25 (gi|45515835|ref|ZP_00167389.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.	gene	gene1571	http://www.ncbi.nlm.nih.gov/gene/?term=azo1537
azo1538	azo1538	ptsp	ptsp	1685213	1686571	+	putative phosphoenolpyruvate-protein phosphotransferase	Putative phosphoenolpyruvate-protein phosphotransferase%2C%3B~Function unclear	gene	gene1572	http://www.ncbi.nlm.nih.gov/gene/?term=azo1538
azo1539	azo1539	acoA1	acoA1	1686698	1687660	+	putative acetion dehydrogenase%2C alpha subunit	Putative acetoin dehydrogenase%2C alpha subunit. Homology to acoA of C. magnum of 36%25 (trembl|Q46142) CATALYZES THE 26-DICHLOROPHENOLINDOPHENOL-DEPENDENT CLEAVAGE OF ACETOIN INTO ACETATE AND ACETALDEHYDE IN VITRO. THE ALPHA SUBUNIT IS PROBABLY THE CATALYTIC SUBUNIT OF THE ENZYME. Pfam: Dehydrogenase E1 component no signal peptide no TMHs%3B~Family membership	gene	gene1573	http://www.ncbi.nlm.nih.gov/gene/?term=azo1539
azo1540	azo1540	acoB1	acoB1	1687671	1688627	+	probable acetoin dehydrogenase%2C beta subunit	Probable acetoin dehydrogenase%2C beta subunit. Homology to acoB of A. eutrophus of 41%25 (sprot|ACOB_ALCEU) Catalyzes the 2%2C6-dichlorophenolindophenol-dependent cleavage of acetoin into acetate and acetaldehyde%2C in vitro. The beta subunit is probably not the catalytic subunit of the enzyme. Pfam: Transketolase%2C pyridine binding%3B Transketolase%2C C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1574	http://www.ncbi.nlm.nih.gov/gene/?term=azo1540
azo1541	azo1541	gst	gst	1688741	1689355	+	putative glutathione transferase	Putative glutathione transferase. Homology to gst of E. coli of 36%25 (sprot|GT_ECOLI). Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. InterPro: Glutathione S-transferase C terminus (IPR004046)%3B Glutathione S-transferase N terminus (IPR004045) Pfam: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1575	http://www.ncbi.nlm.nih.gov/gene/?term=azo1541
azo1542	azo1542		azo1542	1689373	1690617	-	putative membrane transport protein	Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Homolog to E. coli ynfM%2C an hypothetical transport protein%2Cprobably involved in antibiotic resistance. InterPro: General substrate transporters 2A0108: nitrate transporter%3B~High confidence in function and specificity	gene	gene1576	http://www.ncbi.nlm.nih.gov/gene/?term=azo1542
azo1543	azo1543		azo1543	1690740	1691627	+	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear	gene	gene1577	http://www.ncbi.nlm.nih.gov/gene/?term=azo1543
azo1544	azo1544		azo1544	1691763	1694249	+	GGDEF/EAL/PAC/PAS-domain containing protein	GGDEF/EAL/PAC/PAS-domain containing protein%2C sym%3B pNGR234a) / TREMBL: trembl|Q88A61 (38%25 Pseudomonas syringae (pv. tomato)%2C sensory box/ggdef domain/eal domain protein pspto0536) InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF00563 EAL domain. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain.%3B~Conserved hypothetical protein	gene	gene1578	http://www.ncbi.nlm.nih.gov/gene/?term=azo1544
azo1545	azo1545		azo1545	1694263	1695135	+	hypothetical protein	Hypotheical protein. No good homology of the entire protein with the data base. No domains predicted. No THs. No signal peptide.	gene	gene1579	http://www.ncbi.nlm.nih.gov/gene/?term=azo1545
azo1546	azo1546	citE	citE	1695143	1696138	-	putative citrate lyase beta chain	Probable Citrate lyase beta chain(EC 4.1.3.6)(Citrase)(Citryl-CoA lyase subunit)(EC 4.1.3.34). In citrate-utilising prokaryotes%2C citrate lyase cleaves intracellular citrate into acetate and oxaloacetate%2C and is organised as a functional complex consisting of alpha%2Cbeta%2C and gamma subunits.The alpha subunit substitutes citryl for the acetyl group to form citryl-S-ACP. The beta subunit completes the reaction by cleaving the citryl to yield oxaloacetate and (regenerated) acetyl-S-ACP. Similar to the CitE protein from L.mesenteroides where is part of a gene cluster citCDEFG. SWISSPROT:CILB_LEUMC.O53078. InterPro:IPR006475%3B CitE.IPR001465%3B Malate_synthase. TIGRFAMs:TIGR01588%3B citE%3B 1.%3B~Function unclear	gene	gene1580	http://www.ncbi.nlm.nih.gov/gene/?term=azo1546
azo1547	azo1547	mdh	mdh	1696246	1697238	-	malate dehydrogenase	Malate dehydrogenase cytoplasmic (EC 1.1.1.37). Homolgy to mdh of A. arcticum of 76%25 (sprot|MDH_AQUAR) Malate dehydrogenase catalyzes the interconversion of malate to oxaloacetate utilizing the NAD/NADH cofactor system. The enzyme participates in the citric acid cycle and exists in all aerobics organisms. InterPro: Lactate/malate dehydrogenase (IPR001236)%3B Malate dehydrogenase (IPR001252) Pfam: lactate/malate dehydrogenase%2C alpha/beta C-terminus%3B lactate/malate dehydrogenase%2C NAD binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1581	http://www.ncbi.nlm.nih.gov/gene/?term=azo1547
azo1548	azo1548	frlR	frlR	1697454	1698182	+	putative GntR-family transcriptional regulator	Putative GntR-family transcriptional regulator%2C%3B~Family membership	gene	gene1582	http://www.ncbi.nlm.nih.gov/gene/?term=azo1548
azo1549	azo1549	sdhC	sdhC	1698280	1698669	+	succinate dehydrogenase	Succinate dehydrogenase cytochrome b-556 subunit%2CsdhC.58%25 Identity to TrEMBL%3BQ7NZ57.52%25 to TrEMBL%3BQ9JRJ0%2C36%25 to SwissProt%3BP10446. Has PF01127%2CSuccinate dehydrogenase cytochrome b subunit%3BIPR000701 Sdh_cyt%3B Succinate dehydrogenase (SDH) is a membrane-bound complex of two main components: a membrane-extrinsic component composed of an FAD-binding flavoprotein and an iron-sulphur protein%2C and a hydrophobic component composed of a cytochrome b and a membrane anchor protein.The cytochrome b component is a mono heme transmembrane protein belonging to a family that includes cytochrome b-556 from bacterial SDH (gene sdhC)%3B cytochrome b560 from the mammalian mitochondrial SDH complex and that encoded in the mitochondrial genome of some algae and in the plant Marchantia polymorpha%3B cytochrome b from yeast mitochondrial SDH complex (gene SDH3 or CYB3)%3B and protein cyt-1 from Caenorhabditis. These cytochromes are proteins of about 130 residues that comprise three transmembrane regions. There are two conserved histidines which may be involved in binding the heme group.	gene	gene1583	http://www.ncbi.nlm.nih.gov/gene/?term=azo1549
azo1550	azo1550	sdhD	sdhD	1698666	1699010	+	probable succinate dehydrogenase%2C hydrophobic membrane anchor subunit	Succinate dehydrogenase%2C hydrophobic membrane anchor subunit. Homology to sdhD of C. burnetii of 41%25 (sprot|DHSD_COXBU). THIS IS THE HYDROPHOBIC COMPONENT OF THE SUCCINATE DEHYDROGENASE COMPLEX. IT IS SUGGESTED THAT IT IS REQUIRED TO ANCHOR THE CATALYTIC COMPONENTS TO THE CYTOPLASMIC MEMBRANE. no signal peptide 3 TMHS%3B~Family membership	gene	gene1584	http://www.ncbi.nlm.nih.gov/gene/?term=azo1550
azo1551	azo1551	sdhA	sdhA	1699013	1700806	+	probable succinate dehydrogenase%2C flavoprotein subunit	Probable succinate dehydrogenase%2C flavoprotein subunit. Homology to sdhA of C. burnetii of 54%25 (sprot|DHSA_COXBU) Part of an enzyme complex containing four subunits: a flavoprotein%2C an iron-sulfur protein%2Ccytochrome b-556 and a hydrophobic protein. CATALYTIC ACTIVITY: Succinate + acceptor %3D fumarate + reduced acceptor. InterPro: Fumarate reductase/succinate dehydrogenase flavoprotein N-terminal (IPR003953)%3B Fumarate reductase/succinate dehydrogenase FAD-binding site (IPR003952)%3B Fumarate reductase/succinate dehydrogenase%2C C-terminal (IPR004112) Pfam: FAD-binding domain%3B Fumarate reductase/succinate dehydrogenase no TMHs no signal peptide gidA: glucose-inhibited division prot%3B~High confidence in function and specificity	gene	gene1585	http://www.ncbi.nlm.nih.gov/gene/?term=azo1551
azo1552	azo1552	sdhB	sdhB	1700826	1701536	+	probable succinate dehydrogenase%2C iron-sulfur subunit	Succinate dehydrogenase%2C iron-sulfur subunit. Homology to sdhB of C. burnetii of 59%25 (sprot|DHSB_COXBU). InterPro: Succinate dehydrogenase/fumarate reductase iron-sulfur protein (IPR004489)%3B 4fe-4S ferredoxin%2C iron-sulfur binding domain (IPR001450)%3B Ferredoxin (IPR1041) Pfam: 2Fe-2S iron-sulfur cluster binding domain Tigrfam: dhsB: succinate dehydrogenase and fumarat reductase iron-sulfur protein no TMHs%3B~High confidence in function and specificity	gene	gene1586	http://www.ncbi.nlm.nih.gov/gene/?term=azo1552
azo1553	azo1553		azo1553	1701539	1701775	+	conserved hypothetical protein	Conserved hypothetical protein%2C 39%25 identity to Swissprot%3BQ46825%2C ygfY of Escherichia coli. Has PF03937:(IPR005631%2C DUF339)TPR repeat region%3BThis family represents a set of three divergent TPR repeats found in a small group of uncharacterised proteins. No Signal Peptide or TMH present.%3B~Family membership	gene	gene1587	http://www.ncbi.nlm.nih.gov/gene/?term=azo1553
azo1554	azo1554	gltA	gltA	1701845	1703140	+	probable citrate synthase	Probable citrate synthase. Homology to gltA of s. meliloti of 69%25 (sprot|CISY_RHIME). Citrate synthase is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle: Citrate + CoA %3D acetyl-CoA + H2 O + oxaloacetate InterPro: Citrate synthase (IPR002020) Pfam: Citrate synthase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1588	http://www.ncbi.nlm.nih.gov/gene/?term=azo1554
azo1555	azo1555	odhA	odhA	1703300	1706131	+	probable 2-oxoglutarate dehydrogenase	Probable 2-oxoglutarate dehydrogenase. Homology to odhA of A. eutrophus of 63%25 (sprot|ODO1_ALCEU). THE 2-OXOGLUTARATE DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF 2-OXOGLUTARATE TO SUCCINYL-COA %26 CO(2). IT CONTAINS MULTIPLE COPIES OF 3 ENZYMATIC COMPONENTS: 2-OXOGLUTARATE DEHYDROGENASE (E1) DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE (E2) AND LIPOAMIDE DEHYDROGENASE (E3). InterPro: Dehydrogenase E1 component (IPR001017)%3B Transletolase (IPR005474) Tigrfam: 2oxo_dh_E1: 2-oxoglutarate dehydrogenase%2C E1 component Pfam: Dehydrogenase E1 component%2C Transketolas%2C pyridine binding domain no signale peptide no TMHs%3B~High confidence in function and specificity	gene	gene1589	http://www.ncbi.nlm.nih.gov/gene/?term=azo1555
azo1556	azo1556	odhB	odhB	1706183	1707385	+	dihydrolipoamide S-succinyltransferase	Dihydrolipoamide S-succinyltransferase. Homology to odhB of A. eutrophus of 71%25 (sprot|ODO2_ALCEU). THE 2-OXOGLUTARATE DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF 2-OXOGLUTARATE TO SUCCINYL-COA %26 CO(2). IT CONTAINS MULTIPLE COPIES OF 3 ENZYMATIC COMPONENTS: 2-OXOGLUTARATE DEHYDROGENASE (E1) DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE (E2) AND LIPOAMIDE DEHYDROGENASE (E3) (BY SIMILARITY). Pfam: Biotin-requiring enzyme%3B e3 binding domain%3B 2-oxo acid dehydrogenase acyltransferase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1590	http://www.ncbi.nlm.nih.gov/gene/?term=azo1556
azo1557	azo1557	odhL	odhL	1707467	1708891	+	probable dihydrolipoyl dehydrogenase	Probable dihydrolipoamide dehydrogenase. Homology to odhL of A. eutrophus of 68%25 (sprot|DLDH_ALCEU). THE BRANCHED-CHAIN ALPHA-KETO DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF ALPHA-KETO ACIDS TO ACYL-COA AND CO(2). IT CONTAINS MULTIPLE COPIES OF 3 ENZYMATIC COMPONENTS: BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE (E1) LIPOAMIDE ACYLTRANSFERASE (E2) AND LIPOAMIDE DEHYDROGENASE (E3). InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327)%3B Pyridine nucleotide-disulphide oxidoreductase%2C classI (IPR001100)%3B Pyridine nucleotide-disulphide oxidoreductase dimerisation domain (IPR001099) Pfam: Pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase dimersiation domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1591	http://www.ncbi.nlm.nih.gov/gene/?term=azo1557
azo1558	azo1558		azo1558	1708972	1711326	-	conserved hypothetical	conserved hypothetical protein but a part of protein have similarity to potassium-transporting ATPase%2CA subunit. TIGR Cellular role(s):Transport and binding proteins: Cations Entry name :- SWISSPROT:YACK_RHIME Prim. accession # Q9X447 Identity:-46%25 interPro :-IPR004623%3B K_ATPaseA. Pfam PF03814%3B KdpA%3B 1. Number of predicted TMHs: 0 Signal peptide probability: 0.082	gene	gene1592	http://www.ncbi.nlm.nih.gov/gene/?term=azo1558
azo1559	azo1559	afg	afg	1711473	1712678	+	probable ATPase	Hypothetical protein yhcM. TREMBL:Q8XZX3: 54%25 identity%2C 69%25 similarity This family of proteins contains a P-loop motif and are predicted to be ATPases InterPro:IPR005654%3B AFG1_ATPase. Pfam PF03969%3B AFG1_ATPase No signal peptide No transmembrane helices L9: ribosomal protein L9%3B~Specificity unclear	gene	gene1593	http://www.ncbi.nlm.nih.gov/gene/?term=azo1559
azo1560	azo1560	yoaA	yoaA	1712686	1714659	+	probable ATP-dependent helicase	Probable ATP-dependent helicase%2C%3B~Family membership	gene	gene1594	http://www.ncbi.nlm.nih.gov/gene/?term=azo1560
azo1561	azo1561	mobB1	mobB1	1714770	1715264	+	molybdopterin-guanine dinucleotide biosynthesis protein B	Molybdopterin-guanine dinucleotide biosynthesis protein B. may bind the guanine nucleotide required for the synthesis of molybdopterin guanine dinucleotide. mobB: molybdopterin-guanine dinucleotide%3B~High confidence in function and specificity	gene	gene1595	http://www.ncbi.nlm.nih.gov/gene/?term=azo1561
azo1562	azo1562	moeA1	moeA1	1715261	1716466	+	molybdopterin cofactor biosynthesis protein	Molybdopterin biosynthesis protein moeA. Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin) necessary for molybdo-enzymes. Seems to be involved in a step of activation of molybdenum in the form of thiomolybdenum. InterPro: Molybdenum cofactor biosynthesis protein molyb_syn: molybdenum cofactor synthesis%3B~High confidence in function and specificity	gene	gene1596	http://www.ncbi.nlm.nih.gov/gene/?term=azo1562
azo1563	azo1563	moaD	moaD	1716479	1716733	+	molybdopterin converting factor%2C subunit	Molybdopterin converting factor subunit 1 (MPT synthase subunit 1) (Molybdopterin synthase subunit 1) (Molybdenum cofactor biosynthesis protein D) . Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur atoms are provided by the active form of the small subunit whose activation involves the acquisition of sulfur and the activity of moeB/chlN.%3B~High confidence in function and specificity	gene	gene1597	http://www.ncbi.nlm.nih.gov/gene/?term=azo1563
azo1564	azo1564	moaE	moaE	1716738	1717208	+	molybdenum cofactor biosynthesis protein E	Molybdopterin converting factor subunit 2 (MPT synthase subunit 2) (Molybdopterin synthase subunit 2) . Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group.%3B~High confidence in function and specificity	gene	gene1598	http://www.ncbi.nlm.nih.gov/gene/?term=azo1564
azo1565	azo1565	phaP	phaP	1717276	1717779	-	putative phasin protein	Putative phasin protein PhaP.A family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions%2C the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins. However%2C the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase. TrEMBL: Q93QF2 InterPro:IPR010127%2CTIGR01841 NO TMH Present No Signal Peptide Present%3B~Family membership	gene	gene1599	http://www.ncbi.nlm.nih.gov/gene/?term=azo1565
azo1566	azo1566	clpB1	clpB1	1718010	1720592	+	probable ATP-dependent Clp protease%2C ATP-binding subunit ClpB	Probable ATP-dependent Clp protease%2C ATP-binding subunit ClpB. Homology to clpB of E. coli of 66%25 (sprot|CLPB_ECOLI). The protein is thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates. Pfam: ATPase family assocciated with various cellular activities%3B CPL amino terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1600	http://www.ncbi.nlm.nih.gov/gene/?term=azo1566
azo1567	azo1567		azo1567	1720639	1723911	-	GGDEF/EAL-domain containing protein	GGDEF/EAL-domain containing protein	gene	gene1601	http://www.ncbi.nlm.nih.gov/gene/?term=azo1567
azo1568	azo1568	ppiD	ppiD	1724061	1725956	+	putative peptidyl-prolyl cis-trans isomerase	Putative peptidyl-prolyl cis-trans isomerase. Homology to ppiD of E. coli of 23%25 (sprot|PPID_ECOLI). PPIASES ACCELERATE THE FOLDING OF PROTEINS. SEEMS TO BE INVOLVED IN THE FOLDING OF OUTER MEMBRANE PROTEINS. InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase (IPR000297) Pfam: PPIC-type PPIASE domain probable 1 TMH no signal peptide%3B~Family membership	gene	gene1602	http://www.ncbi.nlm.nih.gov/gene/?term=azo1568
azo1569	azo1569	fabI1	fabI1	1726037	1726828	-	probable enoyl-acyl carrier protein reductase	CATALYTIC ACTIVITY: Acyl-[acyl-carrier protein] + NAD+ %3D trans-2%2C3-dehydroacyl-[acyl-carrier protein] + NADH Entry name:- SWISSPROT:FABI_PSEAE Prim. accession # Q9ZFE4 Identities %3D 173/260 (66%25) InterPro :- IPR002198%3B ADH_short. Pfam:- PF00106%3B adh_short%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.044 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene1603	http://www.ncbi.nlm.nih.gov/gene/?term=azo1569
azo1570	azo1570		azo1570	1726995	1727903	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RSC3414 of Ralstonia solanacearum of 48%25 (sprot|YY14_RALSO(SRS))%2C Has PF05249:(IPR007913)%3BUncharacterised protein family (UPF0187)%3BThis family of proteins is functionally uncharacterised. signal peptide 2 TMHs%3B~Conserved hypothetical protein	gene	gene1604	http://www.ncbi.nlm.nih.gov/gene/?term=azo1570
azo1571	azo1571		azo1571	1727944	1730145	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to hbpA of N. europaea of 56%25. Protein consist of two domains: 1. bacterial extracellular sloute protein with homology to heme-binding protein A which is important for the heme aquisition and 2. a transmembrane helix a the C-terminus (unusual combination). Interpro: Bacterial extracellular solute-binding protein%2C family 5 (IPR000914) Pfam: Bacterial extracellular solute binding protein Signal peptide one TMH	gene	gene1605	http://www.ncbi.nlm.nih.gov/gene/?term=azo1571
azo1572	azo1572	appB	appB	1730147	1731124	+	putative Oligopeptide ABC transporter%2C permease protein	Dipeptide transport system permease protein dppB. Part of the binding-protein-dependent transport system for dipeptides%3B probably responsible for the translocation of the substrate across the membrane. InterPro: Binding-protein-dependent transport systems inner membrane component crcB: crcB protein%3B~High confidence in function and specificity	gene	gene1606	http://www.ncbi.nlm.nih.gov/gene/?term=azo1572
azo1573	azo1573	appC	appC	1731121	1732533	+	Oligopeptide ABC transporter%2C permease protein probable.	Oligopeptide transport system permease protein appC. This protein is a component of an oligopeptide permease a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence though unlike OPP is incapable of transporting tripeptides. Probably responsible for the translocation of the substrate across the membrane (By similarity). pts-Glc: PTS system maltose and gluco%3B~High confidence in function and specificity	gene	gene1607	http://www.ncbi.nlm.nih.gov/gene/?term=azo1573
azo1574	azo1574		azo1574	1732640	1734199	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to XCC2284 of X.campestris of 67%25 (tremble:Q8P8F8) Has PF02696%3BUncharacterized ACR%2C YdiU/UPF0061 family(Protein of Unknown Function)%2C IPR003846. No signal peptide. No TMHs	gene	gene1608	http://www.ncbi.nlm.nih.gov/gene/?term=azo1574
azo1575	azo1575	nnrU	nnrU	1734206	1734787	-	probable NnrU protein	Probable NnrU protein%2C 31%25 identity to TrEMBL%3BQ92Z13%2C Q9AAA0 Has PF07298(IPR009915):NnrU protein%3BThis family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor	gene	gene1609	http://www.ncbi.nlm.nih.gov/gene/?term=azo1575
azo1576	azo1576	smpB	smpB	1734888	1735334	-	probable SsrA-binding protein	Probable SsrA-binding protein. Homology to smpB of E. coli of 54%25 (sprot|SSRP_ECOLI) Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes (By similarity). Tigrfam: smpB: SsrA-binding protein Pfam: SmpB protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1610	http://www.ncbi.nlm.nih.gov/gene/?term=azo1576
azo1577	azo1577		azo1577	1735447	1735884	+	conserved hypothetical protein	Entry name TREMBL:Q8XZH0 Prim. accession # Q8XZH0 InterPro :- IPR005340%3B UPF0083. Pfam PF03654%3B ARPF%3B 1. Identities %3D 78/142 (54%25)%2C Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000	gene	gene1611	http://www.ncbi.nlm.nih.gov/gene/?term=azo1577
azo1578	azo1578		azo1578	1735881	1736204	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3462 of C.violaceum of 54%25 (tremble:Q7NSG4) Has PF03658%3BUncharacterised protein family (UPF0125). IPR005346 Has no signal peptide or TMH present.	gene	gene1612	http://www.ncbi.nlm.nih.gov/gene/?term=azo1578
azo1579	azo1579		azo1579	1736223	1736780	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS05265 of R. solanacearum of 30%25 (trembl|Q8XZG8(SRS)) No domains predicted Signal peptide present No TMH reported.%3B~Conserved hypothetical protein	gene	gene1613	http://www.ncbi.nlm.nih.gov/gene/?term=azo1579
azo1580	azo1580	guaB	guaB	1736897	1738357	+	IMP dehydrogenase	IMP dehydrogenase (Inosine-5'-monophosphate dehydrogenase) (Inosinic acid dehydrogenase) (Inosinate dehydrogenase) (IMP oxidoreductase) (Inosine monophosphate oxidoreductase) kpsF: KpsF/GutQ family protein%3B~High confidence in function and specificity	gene	gene1614	http://www.ncbi.nlm.nih.gov/gene/?term=azo1580
azo1581	azo1581	guaA	guaA	1738436	1740001	+	GMP synthase (glutamine-hydrolyzing)	GMP synthase (glutamine-hydrolyzing) (Glutamine amidotransferase) (GMP synthetase) guaA_Cterm: GMP synthase C-terminal%3B~High confidence in function and specificity	gene	gene1615	http://www.ncbi.nlm.nih.gov/gene/?term=azo1581
azo1582	azo1582		azo1582	1740086	1740970	-	HTH-type transcriptional activator	HTH-type transcriptional activator%2C%3B~Specificity unclear	gene	gene1616	http://www.ncbi.nlm.nih.gov/gene/?term=azo1582
azo1583	azo1583	nqo1	nqo1	1741067	1741870	+	probable NAD(P)H dehydrogenase%2C quinone 1	NAD(P)H dehydrogenase [quinone] 1 (EC 1.6.5.2) (Quinone reductase 1) (QR1) (DT-diaphorase) (DTD) (Azoreductase) (Phylloquinone reductase) (Menadione reductase). The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinons involved in detoxification pathways as well as in biosynthetic processes such as the vitamin K-dependent gamma-carboxylation of glutamate residues in prothrombin synthesis (By similarity). trembl:Q9I4B4:72%25identity%3B 81%25 similarity InterPro: NAD(P)H dehydrogenase (quinone) InterPro:IPR003680%3B NADHdh_2. Pfam:PF02525%3B Flavodoxin_2 crcB: crcB protein No signal peptide present Absence of transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity	gene	gene1617	http://www.ncbi.nlm.nih.gov/gene/?term=azo1583
azo1584	azo1584		azo1584	1741890	1743509	-	putative two-component hybrid sensor and regulator	Putative two-component hybrid sensor and regulator %2C%3B~Function unclear	gene	gene1618	http://www.ncbi.nlm.nih.gov/gene/?term=azo1584
azo1585	azo1585		azo1585	1743693	1744202	-	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 1 TMH	gene	gene1619	http://www.ncbi.nlm.nih.gov/gene/?term=azo1585
azo1586	azo1586		azo1586	1744406	1744909	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Avin02003713 of Azotobacter vinelandii of 35%25 (gi|53610668|ref|ZP_00089587.2|(NBCI ENTREZ)). No domains predicted. Signal P reporting signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene1620	http://www.ncbi.nlm.nih.gov/gene/?term=azo1586
azo1587	azo1587		azo1587	1744963	1746744	-	putative two-component system sensor protein	Putative two-component system sensor protein%2C%3B~Function unclear	gene	gene1621	http://www.ncbi.nlm.nih.gov/gene/?term=azo1587
azo1588	azo1588	cumB	cumB	1746847	1747311	+	cytidine deaminase	Cytidine deaminase (EC: 3.5.4.5) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (EC: 3.5.4.12) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [1%2C 2]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.%3B~High confidence in function and specificity	gene	gene1622	http://www.ncbi.nlm.nih.gov/gene/?term=azo1588
azo1589	azo1589		azo1589	1747313	1747792	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CBU1080 of C.burnetii of 59%25 (tremble:Q83CN1) Has PF03734%3BErfK/YbiS/YcfS/YnhG%3B(IPR005490)This family of proteins are found in a range of bacteria. Th conserved region contains a conserved histidine and cysteine%2Csuggesting that these proteins have an enzymatic activity. Several members of this family contain peptidoglycan binding domains. So these proteins may use peptidoglycan or a precursor as a substrate. No TMHs. No signal peptide.	gene	gene1623	http://www.ncbi.nlm.nih.gov/gene/?term=azo1589
azo1590	azo1590		azo1590	1747789	1748220	+	conserved hypothetical acetyltransferase	Conserved hypothetical acetyltransferase. Homology to glr3404 of G. violaceus of 52%25 (trembl|Q7NFX1). InterPro: GCN5-related N-acetyltransferase (IPR000182) Pfam: Acetyltransferase (GNAT) family no signal peptide no TMHS%3B~Family membership	gene	gene1624	http://www.ncbi.nlm.nih.gov/gene/?term=azo1590
azo1591	azo1591		azo1591	1748232	1748999	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to GSU0792 of G.sulfurreducens of 50%25 (gsu:GSU0792(KEGG)) Has PF05742(IPR008551)%3BProtein of unknown function (DUF833)%3BThis family is found in eukaryotes%2C prokaryotes and viruses and has no known function. P54797 has been found to be expressed during early embryogenesis in mice. No signal peptide or TMH present.	gene	gene1625	http://www.ncbi.nlm.nih.gov/gene/?term=azo1591
azo1592	azo1592		azo1592	1748990	1749307	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebD92 of Azoarcus sp. EbN1 of 46%25 (gnl|keqq|eba:ebD92(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene1626	http://www.ncbi.nlm.nih.gov/gene/?term=azo1592
azo1593	azo1593		azo1593	1749321	1750349	-	conserved hypothetical aminomethyltransferase	Conserved hypothetical protein aminomethyltransferase . Homology to ne1514 of N. europaea of 37%25 (trembl|Q82UH2) InterPro: Glycine cleavage T-protein (aminomethyl transferase) Tigrfam: gcvT: glycine cleavage system T protein Pfam: Glycine cleavage T-protein This is a family of glycine cleavage T-proteins%2C part of the glycine cleavage multienzyme complex (GCV) which catalyses the catabolism of glycine. The T-protein is an aminomethyl transferase that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein %3D (6R)-5%2C10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein%3B~Specificity unclear	gene	gene1627	http://www.ncbi.nlm.nih.gov/gene/?term=azo1593
azo1594	azo1594		azo1594	1750580	1751584	+	conserved hypothetical protein	Hypothetical protein HI0457. This entry describes proteins of unknown function TREMBL:Q8XYH5: 50%25 identity%2C66%25 similarity InterPro:IPR003770%3B DUF175. Pfam:PF02618%3B ADC_lyas Non secretory protein with signal peptide probability 0.977 (Signal P predicted) No. of transmembrane helices: 1 (TMHMM predicted) This entry describes proteins of unknown function 2A0108: nitrate transporter%3B~Function unclear	gene	gene1628	http://www.ncbi.nlm.nih.gov/gene/?term=azo1594
azo1595	azo1595	tmk	tmk	1751590	1752210	+	dTMP kinase	dTMP kinase (Thymidylate kinase) InterPro: Thymidylate kinase DTMP_kinase: thymidylate kinase%3B~High confidence in function and specificity	gene	gene1629	http://www.ncbi.nlm.nih.gov/gene/?term=azo1595
azo1596	azo1596	holB	holB	1752207	1753256	+	DNA-directed DNA polymerase	DNA polymerase III delta subunit. DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity (By similarity). TIGRFAM: holB: DNA polymerase III delta prime.%3B~High confidence in function and specificity	gene	gene1630	http://www.ncbi.nlm.nih.gov/gene/?term=azo1596
azo1597	azo1597	pilZ	pilZ	1753253	1753624	+	Type IV pilus biogenesis protein PilZ	Type IV pilus biogenesis protein PilZ%2C 56%25 identity to TrEMBL%3BQ87YH3%2C Q8PBU4. Has PF07238%2C Type IV pilus assembly protein PilZ%3B IPR009875 %3BThis family consists of several bacterial type IV pilus assembly proteins. PilZ is thought to have a cytoplasmic location and be essential for type 4 fimbrial biogenesis but its exact function is unknown.	gene	gene1631	http://www.ncbi.nlm.nih.gov/gene/?term=azo1597
azo1598	azo1598		azo1598	1753650	1754420	+	putative deoxyribonuclease	Putative deoxyribonuclease yabD (EC 3.1.21.-). InterPro: Uncharacterized protein family UPF0006. TIGR00010: deoxyribonuclease TatD family.%3B~Specificity unclear	gene	gene1632	http://www.ncbi.nlm.nih.gov/gene/?term=azo1598
azo1599	azo1599	ank1	ank1	1754407	1755096	+	putative ankyrin repeat harbouring exported protein	Hypothetical protein KIAA1223 (Fragment). TREMBL:Q8XYH0:35%25 identity%3B TREMBL:Q7VXC9:35%25 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes.Each Ankyrin repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90 angle. The repeats stack together to form an L-shaped structure InterPro: Ankyrin-repeat Pfam:Phage_integr_N:Phage integrase%2C N-terminal SAM-like wecB_tagA_cpsF: glycosyl transferase. Transmembrane helices 0 and presence of signal peptide (Signal P)for exporting.(probably signal peptide bearing exported protein)%3B~Specificity unclear	gene	gene1633	http://www.ncbi.nlm.nih.gov/gene/?term=azo1599
azo1600	azo1600		azo1600	1755103	1755936	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Rgel02003216 of Rubrivivax gelatinosus of 54%25 (gi|47572589|ref|ZP_00242632.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.	gene	gene1634	http://www.ncbi.nlm.nih.gov/gene/?term=azo1600
azo1601	azo1601		azo1601	1755933	1756850	-	histone deacetylase family protein	Histone deacetylases catalyse the removal of the acetyl group from histones. Histone deacetylase%2C acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of an ancient family%2C TREMBL:Q7NVL6 (58%25 identity)%3B TREMBL:Q8XZ00 (57%25 identity). InterPro (IPR000286): Histone deacetylase superfamily Pfam (PF00850): Histone deacetylase domain.%3B~Family membership	gene	gene1635	http://www.ncbi.nlm.nih.gov/gene/?term=azo1601
azo1602	azo1602		azo1602	1756888	1757868	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Rv2569c/MT2645/Mb2599c of M. bovis of 38%25. Pfam: Transglutaminase-like superfamily. no signal peptide no TMHs%3B~Specificity unclear	gene	gene1636	http://www.ncbi.nlm.nih.gov/gene/?term=azo1602
azo1603	azo1603		azo1603	1757930	1760416	-	conserved hypothetical protein	Conserved hypothetical protein%2C52%25 Identity to TrEMBL%3BQ9HUN7. Has PF04169%3BDomain of unknown function (DUF404)%3B(IPR007297)This is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF403 (IPR007296) and DUF407 (IPR007302). Has PF04174%3BDomain of unknown function (DUF407)%3BThis is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF403 (IPR007296) and DUF404 (IPR007297). Has PF04168%3BBacterial domain of unknown function (DUF403)%3BThis is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF404 (IPR007297) and DUF407 (IPR007302).%3B~Specificity unclear	gene	gene1637	http://www.ncbi.nlm.nih.gov/gene/?term=azo1603
azo1604	azo1604		azo1604	1760466	1763846	-	conserved hypothetical protein	Transglutaminase-like superfamily domain protein%3B67%25 identity (79%25 similarity) to TrEMBL%3BQ87VL0. TrEMBL%3BQ6N3E0(57%25 identity). Has SMART%3BSM00460%2CTGc%3BTransglutaminase/protease-like homologues: (IPR002931):Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction%2C the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular%2C and it is likely that the eukaryotic intracellular proteins are involved in signalling events. NO signal peptide or TMH present.%3B~High confidence in function and specificity	gene	gene1638	http://www.ncbi.nlm.nih.gov/gene/?term=azo1604
azo1605	azo1605	hipO2	hipO2	1764095	1765264	+	probable hippurate hydrolase	Hippurate hydrolase (EC 3.5.1.32) (Benzoylglycine amidohydrolase) (Hippuricase). TREMBL:Q7WFU4: 48%25 identity%2C 58%25 similarity InterPro:IPR002933%3B Peptidase_M20. IPR010168%3B Pept_M20D_amidh. Pfam: PF01546%3B Peptidase_M20%3B 1. TIGRFAMs TIGR01891%3B amidohydrolases No signal peptide present No transmembrane helices present mreB: cell shape determining protein M%3B~High confidence in function and specificity	gene	gene1639	http://www.ncbi.nlm.nih.gov/gene/?term=azo1605
azo1606	azo1606		azo1606	1765274	1767766	+	putative inner membrane transport permease	Similar to TREMBL:Q7WGZ1 (41%25 identity)%3B TREMBL:Q7W9R7 (41%25 identity)%3B TREMBL:Q8XXM2 (37%25 identity). Pfam (DUF214): Predicted permease. TMHMM reporting 10 transmembrane helices.%3B~Specificity unclear	gene	gene1640	http://www.ncbi.nlm.nih.gov/gene/?term=azo1606
azo1607	azo1607	moaA	moaA	1767782	1768855	-	molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A. Together with moaC is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z (By similarity). InterPro: MoaA / nifB / pqqE family%3B~High confidence in function and specificity	gene	gene1641	http://www.ncbi.nlm.nih.gov/gene/?term=azo1607
azo1608	azo1608		azo1608	1769067	1769345	+	hypothetical protein	hypothetical protein having 55%25 similarity with Nitrosomonas europaea No Signal peptide present No TMH reported.	gene	gene1642	http://www.ncbi.nlm.nih.gov/gene/?term=azo1608
azo1609	azo1609		azo1609	1769477	1771894	+	conserved hypothetical ATP-dependent protease	Conserved hypothetical ATP-dependent protease. Homology to gsu2433 of G. sulfurreducens of 40%25 (tremblnew|AAR35806). Tigrfam:lon_rel: ATP-dependent protease puta no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1643	http://www.ncbi.nlm.nih.gov/gene/?term=azo1609
azo1610	azo1610	tyrB	tyrB	1772287	1773495	-	probable aromatic-amino-acid aminotransferase	Probable aromatic-amino-acid aminotransferase. Homology to tyrB of E. coli of 52%25 (sprot|TYRB_ECO). Is involved in biosynthesis of phe%2C tyr%2C asp and leu. Catalyse the reactiion: an aromatic amino acid + 2-oxoglutarate %3D an aromatic oxo acid + l-glutamate. Pfam: Aminotransferase class I and II no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1646	http://www.ncbi.nlm.nih.gov/gene/?term=azo1610
azo1611	azo1611	uvrB	uvrB	1773639	1775714	+	excinuclease ABC subunit B	UvrABC system protein B (UvrB protein) . The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found the DNA wraps around the other uvrB subunit that will check the other stand for damage (By similarity). InterPro: Excinuclease ABC B subunit. uvrb: excinuclease ABC B subunit.%3B~High confidence in function and specificity	gene	gene1647	http://www.ncbi.nlm.nih.gov/gene/?term=azo1611
azo1612	azo1612	ptpA	ptpA	1775724	1776188	+	PtpA protein	Low molecular weight protein-tyrosine-phosphatase%2C%3B~High confidence in function and specificity	gene	gene1648	http://www.ncbi.nlm.nih.gov/gene/?term=azo1612
azo1613	azo1613	rne	rne	1776283	1779327	-	probable ribonuclease E	Probable ribonuclease E (EC 3.1.4.-) (RNase E). Homology to rne of E. coli of 44%25 (sprot|RNE_ECOLI) This protein matures 5S rRNA from its precursors from all the rRNA genes. It is the major endoribonuclease participating in mRNA turnover. Interpro: Ribonuclease E and G (IPR004659)%3B S1 RNA binding domain (IPR003029) Pfam: S1 RNA binding domain Tigrfam: RNase EG: ribonuclease%2CRne/Rng family no signal peptide no TMHs%3B~Family membership	gene	gene1649	http://www.ncbi.nlm.nih.gov/gene/?term=azo1613
azo1614	azo1614	rluC	rluC	1779739	1780698	+	ribosomal large subunit pseudouridine synthase C	Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil at positions 955 2504 and 2580 in 23S ribosomal RNA.%3B~Family membership	gene	gene1650	http://www.ncbi.nlm.nih.gov/gene/?term=azo1614
azo1615	azo1615		azo1615	1780691	1781347	+	probable hydrolase	TREMBL:Q7VSFO: Probable hydrolase%2C 55%25 identity%2C63%25 similarity Phosphoglycolate phosphatase (PGP). InterPro:PR006402%3B HAD-SF-IA-v3. IPR006439%3B HAD_SF_A_v1. IPR005834%3B Hydrolase. Pfam:PF00702%3B Hydrolase%3B Haloacid dehaloginase like hydrolase TIGRFAMs:TIGR01549%3B HAD-SF-IA-v1%3B TIGR01509%3B HAD-SF-IA-v3%3B serB: phosphoserine phosphatase SerB hstdl_phs_rel: histidinol phosphatase-%3B~Function unclear	gene	gene1651	http://www.ncbi.nlm.nih.gov/gene/?term=azo1615
azo1616	azo1616		azo1616	1781326	1781682	+	conserved hypothetical ferredoxin protein	Conserved hypothetical ferredoxin subunits of nitrite reductase. Conserved Rieske domain is present. Similar to NirD from E.Coli. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit Non-secretory protein%3B~Function unclear	gene	gene1652	http://www.ncbi.nlm.nih.gov/gene/?term=azo1616
azo1617	azo1617		azo1617	1781715	1782626	+	conserved hypothetical peptidase	Conserved hypothetical peptidase. Haomology to ne1024 of N. europaea of 59%25 (trembl|Q82VP2) InterPro: Peptidase family U7 (IPR002142) Tigrfam: SppA_dom: signal peptide peptidase SppA Pfam: Peptidase family U7 no signal peptide probable 1 TMH%3B~High confidence in function and specificity	gene	gene1653	http://www.ncbi.nlm.nih.gov/gene/?term=azo1617
azo1618	azo1618		azo1618	1782623	1783348	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to bpp3312 of B. parapertussis (trembl|Q7WD15). TIGR00096: conserved hypothetical protein Pfam: Tetrapyrrole (Corrin/Porphyrin) Methyltransferase no signal peptide no TMHs	gene	gene1654	http://www.ncbi.nlm.nih.gov/gene/?term=azo1618
azo1619	azo1619	yceF	yceF	1783345	1783923	-	Maf-like protein	Maf-like protein yceF. InterPro: Maf-like protein%3B~Family membership	gene	gene1655	http://www.ncbi.nlm.nih.gov/gene/?term=azo1619
azo1620	azo1620		azo1620	1784046	1784531	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42%25 (trembl:Q7NSK4). Has PF02620%2C Uncharacterized ACR%2CIPR003772%3BThis entry describes proteins of unknown function. No signal peptide. No TMHs	gene	gene1656	http://www.ncbi.nlm.nih.gov/gene/?term=azo1620
azo1621	azo1621	rpmF	rpmF	1784569	1784748	+	50S ribosomal protein L32	50S ribosomal protein L32.%3B~Family membership	gene	gene1657	http://www.ncbi.nlm.nih.gov/gene/?term=azo1621
azo1622	azo1622	plsX	plsX	1784837	1785853	+	probable fatty acid/phospholipid synthesis protein plsX	Function:-The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes [1]. The plsX gene encodes a poorly understood enzyme of phospholipid metabolism [2]. Belongs to the plsx family. Entry name :-SWISSPROT:PLSX_SALTY Prim. accession # O85138 Identities %3D 147/336 (43%25) InterPro assignment: IPR003664 PFAM: PF02504 Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Family membership	gene	gene1658	http://www.ncbi.nlm.nih.gov/gene/?term=azo1622
azo1623	azo1623	fabH	fabH	1785850	1786815	+	probable 3-oxoacyl-(acyl-carrier-protein) synthase III	Function:-Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and/or straight-chain of fatty acids (By similarity). Entry name SWISSPROT:FABH_ECOLI Prim. accession # P24249 Identities %3D 171/320 (53%25) InterPro :- IPR004655%3B FabH. IPR000794%3B Ketoacyl_synth. Prediction: Non-secretory protein Signal peptide probability: 0.022 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene1659	http://www.ncbi.nlm.nih.gov/gene/?term=azo1623
azo1624	azo1624	fabD	fabD	1786843	1787772	+	probable malonyl CoA-acyl carrier protein transacylase	Probable malonyl CoA-acyl carrier protein transacylase. Homology to fabD of E. coli of 54%25 (sprot|FABD_ECOLI). Is involved in fatty acid biosynthesis and transfers the malonyl moeity from coenzyme A to acyl-carrier protein. InterPro: Acyl transferase domain (IPR001227)%3B Manyl CoA-acyl carrier protein transaylase (IPR004410) Pfam: Acyl transferase domain Tigrfam: fabD: malonyl CoA-acyl carrier protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1660	http://www.ncbi.nlm.nih.gov/gene/?term=azo1624
azo1625	azo1625	fabG1	fabG1	1787775	1788524	+	3-oxoacyl-[acyl-carrier-protein] reductase	Belongs to the short-chain dehydrogenases/reductases (SDR) family. Catalyzes first reduction step in fatty acid biosynthesis pathway%2CTREMBL:Q7W5I6 (62%25 identity)%3B SWISSPROT:O54438 (54%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~High confidence in function and specificity	gene	gene1661	http://www.ncbi.nlm.nih.gov/gene/?term=azo1625
azo1626	azo1626	acpP	acpP	1788618	1788857	+	AcpP protein	Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups%2C TREMBL:Q7NSK9 (74%25 identity)%3B SWISSPROT:Q9JR72 (71%25 identity). Pfam (PF00550): Phosphopantetheine attachment site. TIGRFAM (TIGR00517): Acyl carrier protein. HTH reporting nulceic acid binding motif.%3B~Family membership	gene	gene1662	http://www.ncbi.nlm.nih.gov/gene/?term=azo1626
azo1627	azo1627	fabF1	fabF1	1788940	1790175	+	3-oxoacyl-[acyl-carrier-protein] synthase	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-acp%2C TREMBL:Q7WD24 (70%25 identity)%3B SWISSPROT:P39435 (57%25 identity). InterPro (IPR000794): Beta-ketoacyl synthase. Pfam (PF00109): Beta-ketoacyl synthase%2C N-terminal domain. Pfam (PF02801): Beta-ketoacyl synthase%2C C-terminal domain.%3B~High confidence in function and specificity	gene	gene1663	http://www.ncbi.nlm.nih.gov/gene/?term=azo1627
azo1628	azo1628		azo1628	1790198	1790665	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA5460 of Azoarcus sp. EbN1 of 32%25 (gnl|keqq|eba:ebA5460(KEGG)). No domains predicted. No signal peptide. 2 TMHs%3B~Conserved hypothetical protein	gene	gene1664	http://www.ncbi.nlm.nih.gov/gene/?term=azo1628
azo1629	azo1629	nadB	nadB	1790655	1792244	-	L-aspartate oxidase	L-aspartate oxidase 1 (EC 1.4.3.16) (LASPO 1) (Quinolinate synthetase B 1). Catalyzes the oxidation of L-aspartate to iminoaspartate. InterPro: Fumarate reductase/succinate dehydrogenase flavoprotein N-terminal%3B~High confidence in function and specificity	gene	gene1665	http://www.ncbi.nlm.nih.gov/gene/?term=azo1629
azo1630	azo1630	algU	algU	1792464	1793063	+	RNA polymerase sigma factor	RNA polymerase sigma factor%2C Myxococcus xanthus carQ%3B Alcaligenes eutrophus plasmid pMOL28-encoded cnrH%3B Escherichia coli fecI%3B Pseudomonas syringae hrpL%3B rpoE from Escherichia coli%2C Salmonella typhimurium and Haemophilus influenzae%3B Streptomyces coelicolor sigE%3B and Bacillus subtilis sigma factors sigV%2C sigX%2C sigY and sigZ.%3B~High confidence in function and specificity	gene	gene1666	http://www.ncbi.nlm.nih.gov/gene/?term=azo1630
azo1631	azo1631	rseA	rseA	1793073	1793618	+	putative sigma-E factor%2C negative regulatory protein	Putative sigma-E factor%2C negative regulatory protein%2C%3B~High confidence in function and specificity	gene	gene1667	http://www.ncbi.nlm.nih.gov/gene/?term=azo1631
azo1632	azo1632	rseB	rseB	1793615	1794586	+	putative sigma factor regulatory protein	Putative sigma factor regulatory protein%2C%3B~High confidence in function and specificity	gene	gene1668	http://www.ncbi.nlm.nih.gov/gene/?term=azo1632
azo1633	azo1633	rseC	rseC	1794586	1795026	+	putative sigma-E factor regulatory protein RseC	Putative sigma-E factor regulatory protein RseC%2C%3B~High confidence in function and specificity	gene	gene1669	http://www.ncbi.nlm.nih.gov/gene/?term=azo1633
azo1634	azo1634	mucD2	mucD2	1795023	1796441	+	probable serine protease MucD	Probable serine protease MucD. Homology to mucD of P. aruginosa of 47%25 (trembl|Q57155) InterPro: Serine proteases trypsin family (IPR001254)%3B PDZ domain (also known as DHR or GLGF) (IPR001478)%3B Chymotrypsin serin protease family (S1) (IPR001314)%3B HtrA/DegQ protease family (IPR001940) Pfam: Trypsin%3B PDZ domain (also known as DHR or GLGF) signal peptide no TMHs ahpD_dom: alkylhydroperoxidase AhpD fam%3B~High confidence in function and specificity	gene	gene1670	http://www.ncbi.nlm.nih.gov/gene/?term=azo1634
azo1635	azo1635		azo1635	1796438	1796695	+	thioredoxin-disulfide reductase	Conserved hypothetical thioredoxin. Homology to a putative thioredoxin of N. menigitidis (NMA0966) of 50%25. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. no signal peptide no TMHs%3B~Function unclear	gene	gene1671	http://www.ncbi.nlm.nih.gov/gene/?term=azo1635
azo1636	azo1636		azo1636	1796728	1797744	-	HTH-type transcriptional regulator	HTH-type transcriptional regulator%2C%3B~Family membership	gene	gene1672	http://www.ncbi.nlm.nih.gov/gene/?term=azo1636
azo1637	azo1637		azo1637	1797863	1798198	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide 3 TMHs	gene	gene1673	http://www.ncbi.nlm.nih.gov/gene/?term=azo1637
azo1638	azo1638		azo1638	1798230	1799195	+	putative exported protein	Putative exported protein%2C 39%25 identity (54%25 similarity)to TrEMBL%3BQ7VUI5 TrEMBL%3BQ7WNJ8. Has PF03401%3BBordetella uptake gene (bug) product%3B(IPR005064)These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. SIgnal Peptide Present. No TMH reported present.%3B~Specificity unclear	gene	gene1674	http://www.ncbi.nlm.nih.gov/gene/?term=azo1638
azo1639	azo1639	lepA	lepA	1799548	1801344	+	probable GTP-binding protein	Probable GTP-binding protein lepA. Homology to lepA of E. coli of 67%25 (sprot|LEPA_ECOLI) LepA is a GTP-binding membrane protein related to EF-G and EF-Tu. InterPro: GTP-binding elongation factor (IPR000795)%3B Elongation factor TU domain 2 (IPR004161) Tigrfam: EF-1_alpha: translation elongation factor%2C subunit alpha Pfam: Elongation factor GTP binding domain%3B Elongation factor TU domain 2 no singal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1675	http://www.ncbi.nlm.nih.gov/gene/?term=azo1639
azo1640	azo1640	lepB	lepB	1801366	1802154	+	LepB protein	Signal peptidase I (EC 3.4.21.89) (SPase I) (Leader peptidase I). SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by one or two N-terminal transmembrane domains%2C with the main part of the protein protuding in the periplasmic space. SPase I can cleave N-terminal leader sequences of nonlipoprotein that are exported by the SecYEG pathway or the twin arginine translocation (Tat) pathway. Pfam: Peptidase_S26 probable 2 TMH no signal peptide%3B~High confidence in function and specificity	gene	gene1676	http://www.ncbi.nlm.nih.gov/gene/?term=azo1640
azo1641	azo1641		azo1641	1802170	1802529	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology with NE2325 of N.europaea of 41%25 (tremble:Q82SJ5) No domains predicted. Signal peptide Present. No TMH reported.%3B~Conserved hypothetical protein	gene	gene1677	http://www.ncbi.nlm.nih.gov/gene/?term=azo1641
azo1642	azo1642	rnc	rnc	1802535	1803206	+	putative Ribonuclease III	Ribonuclease III Digests double-stranded rna. Involved in the processing of ribosomal rna precursors and of some mrnas. Catalysis of the endonucleolytic cleavage of RNA to 5'-phosphomonoesters 56%25 1. SM00358%3B DSRM%3B 1. SM00535%3B RIBOc%3B 1 EC: 3.1.26.3 (RNase III).%3B~High confidence in function and specificity	gene	gene1678	http://www.ncbi.nlm.nih.gov/gene/?term=azo1642
azo1643	azo1643	era	era	1803203	1804117	+	probable GTP-binding protein	GTP-binding protein era homolog. Binds both GDP and GTP has an intrinsic GTPase activity and is essential for cell growth (By similarity).Binds both GDP and GTP%2C has an intrinsic GTPase activity and is essential for cell growth. PTM:Autophosphorylated (By similarity). SIMILARITY:Contains 1 KH type-2 domain. TREMBL:Q8Y0I0: 59%25 identity%2C 76%25 similarity InterPro:IPR005662%3B Era. IPR005289%3B GTP-bindding_dom. IPR004044%3B KH_TYPE_2. IPR005225%3B Small_GTP Pfam: PF01926: MMR_HSR1%3B 1 TIGRFAM:sensory_box:sensory_box: PAS domain S-box mobB: molybdopterin-guanine dinucleotid No signal peptide No transmembrane helices%3B~High confidence in function and specificity	gene	gene1679	http://www.ncbi.nlm.nih.gov/gene/?term=azo1643
azo1644	azo1644	recO	recO	1804142	1804873	+	DNA repair protein RecO (recombination protein O)	DNA repair protein recO (Recombination protein O). Involved in DNA repair and recF pathway recombination (By similarity). reco: DNA repair protein RecO.%3B~High confidence in function and specificity	gene	gene1680	http://www.ncbi.nlm.nih.gov/gene/?term=azo1644
azo1645	azo1645	pdxJ	pdxJ	1804870	1805619	+	pyridoxine biosynthesis	Pyridoxal phosphate biosynthetic protein pdxJ (PNP synthase). Catalyzes the condensation of 1-deoxy-D-xylulose-5- phosphate (DXP) and 1-amino-3-(phosphohydroxy)propan-2-one to form pyridoxine 5-phosphate (PNP) (By similarity). pdxJ: pyridoxal phosphate biosynthetic%3B~High confidence in function and specificity	gene	gene1681	http://www.ncbi.nlm.nih.gov/gene/?term=azo1645
azo1646	azo1646	acpS	acpS	1805634	1806011	+	holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase%2C 50%25 Identity to TrEMBL%3BQ7NWB8%2C Q820I1. SProt%3BQ9KPB6(49%25). Has PF01648%2C4'-phosphopantetheinyl transferase superfamily%3B IPR008278 4-PPT_transf%3B Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of PP-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP. This superfamily consists of two subtypes: The ACPS type such as P24224 and the Sfp type such as P39135. The structure of the Sfp type is known which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion.	gene	gene1682	http://www.ncbi.nlm.nih.gov/gene/?term=azo1646
azo1647	azo1647	nagZ2	nagZ2	1806008	1807141	+	putative beta-hexosaminidase	Beta-hexosaminidase (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase). Cleaves GlcNAc linked beta-14 to MurNAc tripeptides.Involved in the cell wall synthesis%3B murein tripeptide recycling pathway. 49%25 Glyco_hydro_3N. Glycoside hydrolase family 3 N terminal. Pfam: PF00933%3B Glyco_hydro_3%3B 1.%3B~High confidence in function and specificity	gene	gene1683	http://www.ncbi.nlm.nih.gov/gene/?term=azo1647
azo1648	azo1648	uvrC	uvrC	1807351	1809171	+	excinuclease ABC subunit C	UvrABC system protein C (UvrC protein) . The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5 and 3 sides of the lesion. The N-terminal half is responsible for the 3 incision and the C-terminal half is responsible for the 5 incision (By similarity). InterPro: Excinuclease ABC C subunit. uvrC: excinuclease ABC C subunit.%3B~High confidence in function and specificity	gene	gene1684	http://www.ncbi.nlm.nih.gov/gene/?term=azo1648
azo1649	azo1649	pgsA	pgsA	1809267	1809839	+	probable CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (PGP synthase). It catalyses the conversion of CDP-diacylglycerol and glycerol-3-phosphate to CMP and 3-(3-phosphatidyl)-glycerol 1-phosphate in the commited step to the synthesis of acidic phospholipids. It is an integral membrane protein. A number of related enzymes are quite similar in both sequence and catalytic activity%2C including Saccharamyces cerevisiae YDL142c%2C now known to be a cardiolipin synthase. Entry name :-SWISSPROT:PGSA_ECOLI Prim. accession # P06978 Identities %3D 50%25 InterPro IPR000462%3B CDP-OH_P_trans. IPR004570%3B PgsA. Pfam PF01066%3B CDP-OH_P_transf%3B 1. Number of predicted TMHs: 5 Prediction: Non-secretory protein Signal peptide probability: 0.109%3B~Family membership	gene	gene1685	http://www.ncbi.nlm.nih.gov/gene/?term=azo1649
azo1650	azo1650		azo1650	1810266	1811441	+	putative phosphodiesterase protein	Probable Serine--pyruvate aminotransferase mitochondrial precursor (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT). TREMBL:Q7P1E0:36%25 identity%2C 45%25 similarity This family consists of phosphodiesterases%2C including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD%2C deoxynucleotides and nucleotide sugars InterPro:IPR002591%3B Phosphodiest. Pfam:PF01663%3B Phosphodiest%3B bcpB: phosphonopyruvate decarboxylase-rel No transmembrane helices%3B~Function unclear	gene	gene1689	http://www.ncbi.nlm.nih.gov/gene/?term=azo1650
azo1651	azo1651		azo1651	1811528	1811716	+	Hypothetical protein	Hypothetical protein. No homologs in the database. Has No domains%2C repeats%2C motifs or features.	gene	gene1690	http://www.ncbi.nlm.nih.gov/gene/?term=azo1651
azo1652	azo1652		azo1652	1811729	1812199	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS03611 of R.solanacearum of 40%25 (trembl:Q8XXR7). Has PF06676(IPR009562):Protein of unknown function (DUF1178)%3BThis family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. No signal peptide or TMH reported present.	gene	gene1691	http://www.ncbi.nlm.nih.gov/gene/?term=azo1652
azo1653	azo1653		azo1653	1812617	1815325	+	autotransporter	Putative Autotransporter%2C30%25 identity to TrEMBL%3BQ87UU2. Weak homology with hits in the DB. Signal Peptide present. No TMH reported present. Has PF03797%3BAutotransporter beta-domain%3BThe protein component that mediates secretion through the outer membrane is contained within the secreted protein itself%2C hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins%2C in others a different protease is used and in some cases no cleavage occurs.	gene	gene1693	http://www.ncbi.nlm.nih.gov/gene/?term=azo1653
azo1654	azo1654		azo1654	1815335	1815595	-	putative cell division topological specificity factor	Homology to cell division topological specificity factor minE.%3B~Family membership	gene	gene1694	http://www.ncbi.nlm.nih.gov/gene/?term=azo1654
azo1655	azo1655	minD	minD	1815597	1816409	-	putative septum site-determining protein	Septum site-determining protein minD (Cell division inhibitor minD).%3B~High confidence in function and specificity	gene	gene1695	http://www.ncbi.nlm.nih.gov/gene/?term=azo1655
azo1656	azo1656		azo1656	1816439	1817209	-	putative cell division inhibitor	Probable septum site-determining protein minC.%3B~Family membership	gene	gene1696	http://www.ncbi.nlm.nih.gov/gene/?term=azo1656
azo1657	azo1657	hslO	hslO	1817301	1818167	-	putative 33 kDa chaperonin	Putative 33 kDa chaperonin. Homology to hslO of E. coli of 32%25 (sprot|HSLO_ECOLI) Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress (By similarity). InterPro: Hsp33 protein (IPR000397) Pfam: Hsp33 protein no signal peptide no TMHs%3B~Family membership	gene	gene1697	http://www.ncbi.nlm.nih.gov/gene/?term=azo1657
azo1658	azo1658		azo1658	1818164	1818496	-	putative arsenate reductase protein	45%25 Arsen_reductase.IPR006504%3B Cons_hypoth_ArsC. Pfam:PF03960%3B ArsC%3B 1. ArsC:arsenate reductase%2C catalyzes the reduction of arsenate to arsenite. Probably involved in arsenic resistance.%3B~High confidence in function and specificity	gene	gene1698	http://www.ncbi.nlm.nih.gov/gene/?term=azo1658
azo1659	azo1659	tex	tex	1818545	1820866	-	transcription accessory protein	Transcription accessory protein (S1-domain containing RNA binding protein)%2C%3B~High confidence in function and specificity	gene	gene1699	http://www.ncbi.nlm.nih.gov/gene/?term=azo1659
azo1660	azo1660		azo1660	1820983	1821834	-	conserved hypothetical protein	Possible aldose 1-epimerase.Aldose 1-epimerase (mutarotase)%2C responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. InterPro:IPR008183%3B Ald1_epimerase. Pfam:PF01263%3B Aldose_epim%3B 1.	gene	gene1700	http://www.ncbi.nlm.nih.gov/gene/?term=azo1660
azo1661	azo1661		azo1661	1821839	1824526	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to cv3676 of C. violaceum of 47%25 (trembl|Q7NRV4). InterPro: DUF184 (IPR003781). Pfam: CoA binding domain%3B Acetyltransferase (GNAT) family. No signal peptide. No TMHs	gene	gene1701	http://www.ncbi.nlm.nih.gov/gene/?term=azo1661
azo1662	azo1662		azo1662	1824697	1826376	-	putative two-component system sensor protein	Putative two-component system sensor protein%2C 3 Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices.%3B~Function unclear	gene	gene1702	http://www.ncbi.nlm.nih.gov/gene/?term=azo1662
azo1663	azo1663	tehB	tehB	1826675	1827214	+	putative tellurite resistance protein	TREMBL:Q8EI75-35%25 identity%2C 54%25 similarity TREMBLnew:AAS81097 InterPro: SAM (and some other nucleotide) binding motif tehB: tellurite resistance protein TehB. Toxin production and resistance responsible for potassium tellurite resistance when present in high copy number%2C probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. otherwise%2C phenotypically silent.cytoplasmic (potential). was originally (ref.1) thought to be plasmid encoded.InterPro IPR000051%3B SAM_bind. IPR004537%3B TehB. Pfam PF03848%3B TehB%3B 1. TIGRFAMs:TIGR00477%3B tehB%3B 1. INDUCES AGGLUTINATION OF NEURAMINIDASE-TREATED ERYTHROCYTES.%3B~Conserved hypothetical protein	gene	gene1703	http://www.ncbi.nlm.nih.gov/gene/?term=azo1663
azo1664	azo1664		azo1664	1827218	1828321	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to gsu1190 of G. sulfurreducens of 33%25 (tremblnew|AAR34566). InterPro: Rhodanese/cdc25 fold (IPR001763). Pfam: Rhodanese-like domain. No signal peptide. No TMHs.	gene	gene1704	http://www.ncbi.nlm.nih.gov/gene/?term=azo1664
azo1665	azo1665		azo1665	1828320	1829360	+	probable selenide%2C water dikinase	Region start changed from 1828399 to 1828321 (78 bases)	gene	gene1705	http://www.ncbi.nlm.nih.gov/gene/?term=azo1665
azo1666	azo1666	tesA1	tesA1	1829378	1829989	-	probable acyl-CoA thioesterase	Probable acyl-CoA thioesterase. Homology to tesA of E. coli of 42%25 (sprot|TESA_ECOLI) Hydrolyzes long chain acyl thioesters (c12-c18): 2-lysophosphatidylcholine + h(2)o %3D glycerophosphocholine + a fatty acid anion. InterPro: GDSL lipolytic enzyme (IPR001087) Pfam: Lipase/Acylhydrolase with GDSL-like motif signal peptide no TMH%3B~Family membership	gene	gene1706	http://www.ncbi.nlm.nih.gov/gene/?term=azo1666
azo1667	azo1667		azo1667	1829973	1830689	+	putative ABC transporter ATP-binding protein	Similar to TREMBL:Q82UM8 (55%25 identity)%3B TREMBL:Q8XYP0 (59%25 identity)%3B TREMBL:Q7W685 (59%25 identity). Pfam (PF00005): ABC transporter.%3B~Specificity unclear	gene	gene1707	http://www.ncbi.nlm.nih.gov/gene/?term=azo1667
azo1668	azo1668	serB	serB	1830700	1831530	-	probable phosphoserine phosphatase	Phosphoserine phosphatase%2C SerB%2C catalyzes the final step in serine biosynthesis in E. coli. It hydrolyses the phosphate group from phosphoserine to yield serine. Similar to trembl|Q82X56 (54%25) and to sprot|SERB_ECOLI (37%25). TIGRFAM: phosphoserine phosphatase SerB Pfam (PF00702): haloacid dehalogenase-like hydrolase%3B~Specificity unclear	gene	gene1708	http://www.ncbi.nlm.nih.gov/gene/?term=azo1668
azo1669	azo1669	aroF	aroF	1831527	1832603	-	probable phospho-2-dehydro-3-deoxyheptonate aldolase	Probable phospho-2-dehydro-3-deoxyheptonate aldolase. Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP). InterPro: DAHP synthetase class I (IPR006218) Pfam: DAHP synthetase I family Tigrfam: aroFGH: phospho-2-dehydro-3-deoxyheptonat no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1709	http://www.ncbi.nlm.nih.gov/gene/?term=azo1669
azo1670	azo1670		azo1670	1832786	1833313	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA2869 of P.aeruginosa of 32%25 (trembl:Q9HZX7). No domains predicted. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene1710	http://www.ncbi.nlm.nih.gov/gene/?term=azo1670
azo1671	azo1671		azo1671	1833366	1835738	+	GGDEF/EAL/PAS/PAC-domain containing protein	GGDEF/EAL/PAS/PAC-domain containing protein	gene	gene1711	http://www.ncbi.nlm.nih.gov/gene/?term=azo1671
azo1672	azo1672	corA	corA	1835746	1836711	-	putative magnesium and cobalt transport protein	Magnesium and cobalt transport protein CorA. Plays a role in the transport of Magnesium and Cobalt ions. Homolog to E.coli and S.typhimurium%2C magnesium and cobalt proteins. InterPro:IPR002523%3B Mg2+_transptCorA. Pfam: PF01544%3B CorA%3B 1. THM:2%3B~Function unclear	gene	gene1712	http://www.ncbi.nlm.nih.gov/gene/?term=azo1672
azo1673	azo1673	mfd	mfd	1836734	1840186	-	transcription-repair coupling factor	Transcription-repair coupling factor (TRCF). NECESSARY FOR STRAND-SPECIFIC REPAIR. A LESION IN THE TEMPLATE STRAND BLOCKS THE RNA POLYMERASE COMPLEX (RNAP). THE RNAP-DNA-RNA COMPLEX IS SPECIFICALLY RECOGNIZED BY TRCF WHICH RELEASES RNAP AND THE TRUNCATED TRANSCRIPT%3B THE TCRF MAY REPLACE RNAP AT THE LESION SITE AND THEN RECRUIT THE UVRA/B/C REPAIR SYSTEM. mfd: transcription-repair coupling fa%3B~High confidence in function and specificity	gene	gene1713	http://www.ncbi.nlm.nih.gov/gene/?term=azo1673
azo1674	azo1674		azo1674	1840295	1840948	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV1155 of Chromobacterium violaceum of 35%25 (gnl|keqq|cvi:CV1155(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene1714	http://www.ncbi.nlm.nih.gov/gene/?term=azo1674
azo1675	azo1675		azo1675	1841025	1841771	-	putative phosphoribosyltransferase	Probable DNA fragmentation factor 40 kDa subunit (EC 3.-.-.-) (DFF-40) (Caspase-activated deoxyribonuclease) (Caspase-activated DNase) (CAD). Members of PRT family are catalytic and regulatory proteins involved in nucleotide synthesis and salvage. The name PRT comes from phosphoribosyltransferase enzymes%2Cwhich carry out phosphoryl transfer reactions on PRPP%2C an activated form of ribose-5-phosphate. This family includes a range of diverse phosphoribosyl transferase enzymes TREMBL:Q7WXA5: 29%25 identity%2C 47%25 similarity InterPro:IPR000836%3B PRtransferase. Pfam: PF00156%3B Pribosyltran%3B 1. acid_CoA_mut_C: methylmalonyl-CoA muta Non-secretory protein with low probability of signal peptide (0.001) No transmembrane helices%3B~Function unclear	gene	gene1715	http://www.ncbi.nlm.nih.gov/gene/?term=azo1675
azo1676	azo1676	pflA	pflA	1841802	1842875	-	conserved hypothetical pyruvate formate-lyase activating enzyme	conserved hypothetical pyruvat formate-lyase activiating enzyme. Homology to pflA of M. tuberculosis of 64%25 (trembl|P95188). no domains predicted no signal peptide no TMHs%3B~Family membership	gene	gene1716	http://www.ncbi.nlm.nih.gov/gene/?term=azo1676
azo1677	azo1677		azo1677	1842957	1843337	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03002649 of Dechloromonas aromatica of 39%25 (gi|41723559|ref|ZP_00150469.1|(NBCI ENTREZ)). No domains predicted. No TMH. No signal peptide.	gene	gene1717	http://www.ncbi.nlm.nih.gov/gene/?term=azo1677
azo1678	azo1678		azo1678	1843392	1844072	-	putative cyclic nucleotide-binding protein	Putative cyclic nucleotide-binding protein%2C%3B~Specificity unclear	gene	gene1718	http://www.ncbi.nlm.nih.gov/gene/?term=azo1678
azo1679	azo1679		azo1679	1844113	1844679	-	conserved hypothetical protein	Hypothetical protein%2C 38%25 identity to SwissProt%3BO26945 Has PF01871%3BAMMECR1%3B(IPR002733%2C DUF 51)This family consists of several AMMECR1 as well as several uncharacterised proteins. The contiguous gene deletion syndrome AMME is characterised by Alport syndrome%2C midface hypoplasia%2C mental retardation and elliptocytosis and is caused by a deletion in Xq22.3%2Ccomprising several genes including COL4A5%2C FACL4 and AMMECR1. This family contains sequences from several eukaryotic species as well as archaebacteria and it has been suggested that the AMMECR1 protein may have a basic cellular function%2C potentially in either the transcription%2C replication%2C repair or translation machinery.%3B~Specificity unclear	gene	gene1719	http://www.ncbi.nlm.nih.gov/gene/?term=azo1679
azo1680	azo1680		azo1680	1844660	1845484	-	conserved hypothetical protein	Hypothetical UPF0103 protein ST2062. This gene is conserved in several species ranging from Caenorhabditis elegans and yeast to plants and micro-organisms although no function has yet been ascribed to the other proteins in this family. TREMBL:Q843N3: 38%25 identity%2C52%25 similarity InterPro:IPR002733%3B DUF51. IPR002737%3B DUF52. Pfam: PF01871%3B AMMECR1%3B 1. PF01875%3B UPF0103 Signal peptide present No transmembrane helices holB: DNA polymerase III delta prime sub%3B~Function unclear	gene	gene1720	http://www.ncbi.nlm.nih.gov/gene/?term=azo1680
azo1681	azo1681		azo1681	1845532	1846800	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. TrEMBL%3B Q82Y76(48%25 identity). TMHMM2 reporting 14 TMH's present. Signal Peptide not present. Has PF02308%3BMgtC family%3B(IPR003416 MgtCSapB_transpt)The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known%2C but it is thought that MgtC may act as an accessory protein for MgtB%2C thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins. Has PF04093 rod shape-determining protein MreD%3BIPR007227%3B MreD (murein formation D) is involved in the rod shape determination in E. coli%2C and more generally in cell shape determination of bacteria whether or not they are rod-shaped.%3B~Conserved hypothetical protein	gene	gene1721	http://www.ncbi.nlm.nih.gov/gene/?term=azo1681
azo1682	azo1682		azo1682	1846917	1847627	+	probable 4-diphosphocytidyl-2C-methyl-D-erythritol synthase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT). Catalyzes the formation of 4-diphosphocytidyl-2C-methyl- D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate (By similarity). Identities %3D 133/229 (58%25) Entry name SWISSPROT:ISPD_NITEU Prim. accession # Q82UR9 InterPro IPR008233%3B DPCME_synth. IPR001228%3B ISPD_synthase. Pfam PF01128%3B IspD%3B 1. TIGRFAMs TIGR00453%3B ispD%3B 1. Number of predicted TMHs: 0 Signal peptide probability: N0%3B~Conserved hypothetical protein	gene	gene1722	http://www.ncbi.nlm.nih.gov/gene/?term=azo1682
azo1683	azo1683	ispF	ispF	1847624	1848112	+	probable 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase	Probable 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase(MECPS) MECDP-synthase). Homology to ispF of E. coli of 64%25 (sprot|ISPF_ECOLI(SRS)) Converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2- phosphate into 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate and CMP. Also converts 4-diphosphocytidyl-2C-methyl-D-erythritol into 2C-methyl-D-erythritol 34-cyclophosphate and CMP (By similarity). InterPro: YgbB (IPR003526)%3B 2-c-methyl-d-erythritol 2%2C4-cyclodiphosphate synthase (IPR010925) Pfam: YgbB Tigrfam: 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1723	http://www.ncbi.nlm.nih.gov/gene/?term=azo1683
azo1684	azo1684		azo1684	1848221	1848658	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to pc0921 of Parachlamydia_UWE25 of 34%25 (pcu:pc0921(KEGG)). No signal peptide reported to be present. No TMH reported to be present. No domains predicted.	gene	gene1724	http://www.ncbi.nlm.nih.gov/gene/?term=azo1684
azo1685	azo1685		azo1685	1848851	1849654	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to NE0619 of Nitrosomonas europaea of 44%25 (trembl:Q82WP5). Has PF06167%2C IPR010384%3B Protein of unknown function (DUF980)%3BFamily of uncharacterised bacterial sequences. No signal peptide. No TMHs.	gene	gene1725	http://www.ncbi.nlm.nih.gov/gene/?term=azo1685
azo1686	azo1686		azo1686	1849657	1850562	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV2531 of C. violaceum of 42%25 (tremble:Q7NV15) InterPro: Integral membrane protein DUF6 Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transport Pfam: Integral membrane protein DUF6 no signal peptide probable 10 TMHS%3B~Conserved hypothetical protein	gene	gene1726	http://www.ncbi.nlm.nih.gov/gene/?term=azo1686
azo1687	azo1687		azo1687	1850648	1853737	-	putative exported protein	Similar to membrane carboxypeptidases.%3B~Family membership	gene	gene1727	http://www.ncbi.nlm.nih.gov/gene/?term=azo1687
azo1688	azo1688	relA	relA	1853847	1856048	+	GTP diphosphokinase	GTP pyrophosphokinase%2C%3B~High confidence in function and specificity	gene	gene1728	http://www.ncbi.nlm.nih.gov/gene/?term=azo1688
azo1689	azo1689	ppk	ppk	1856085	1858166	-	putative polyphosphate kinase	Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid kinase) (ATP- polyphosphate phosphotransferase).Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). 54%25 PP_kinase. Pfam: PF02503%3B PP_kinase%3B 1.%3B~High confidence in function and specificity	gene	gene1729	http://www.ncbi.nlm.nih.gov/gene/?term=azo1689
azo1690	azo1690	ppx	ppx	1858259	1859809	+	putative exopolyphosphatase	45%25 Ppx_GppA. Pfam:PF02541%3B Ppx-GppA%3B 1.%3B~High confidence in function and specificity	gene	gene1730	http://www.ncbi.nlm.nih.gov/gene/?term=azo1690
azo1691	azo1691		azo1691	1859915	1861012	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Similar to TREMBL:Q8Y2M2 (43%25 identity). InterPro (IPR003453): Domain of unknown function DUF140. Pfam (PF02405): Domain of unknown function DUF140. TIGRFAM (TIGR00056): Conserved hypothetical protein. TMHMM reporting five transmembrane helices.	gene	gene1731	http://www.ncbi.nlm.nih.gov/gene/?term=azo1691
azo1692	azo1692		azo1692	1861009	1861785	+	putative ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q7W0L5 (51%25 identity)%3B TREMBL:Q9A5X8 (46%25 identity). InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. InterPro (IPR003439): ABC transporter. Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership	gene	gene1732	http://www.ncbi.nlm.nih.gov/gene/?term=azo1692
azo1693	azo1693		azo1693	1861775	1862713	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bb0165 of B. bronchiseptica of 31%25 (TREMBL:Q7WR07). Pfam: mce related protein This family of proteins contains the mce (mycobacterial cell entry) proteins from Mycobacterium tuberculosis. The archetype (Rv0169)%2C was isolated as being necessary for colonisation of%2C and survival within%2C the macrophage. This family contains proteins of unknown function from other bacteria. Signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene1733	http://www.ncbi.nlm.nih.gov/gene/?term=azo1693
azo1694	azo1694		azo1694	1862703	1863353	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA6519 of Azoarcus sp. EbN1 of 44%25 (gnl|keqq|eba:ebA6519(KEGG)). no domains predicted. signal peptide present. no TMHs.	gene	gene1734	http://www.ncbi.nlm.nih.gov/gene/?term=azo1694
azo1695	azo1695		azo1695	1863402	1865054	+	putative AMP-binding protein	Similar to TREMBL:Q9HWI3 (58%25 identity)%3B TREMBL:Q89LN0 (56%25 identity)%3B TREMBL:Q986M2 (56%25 identity). InterPro (IPR000873): AMP-dependent synthetase and ligase. Pfam (PF00501): AMP-binding enzyme.%3B~Function unclear	gene	gene1735	http://www.ncbi.nlm.nih.gov/gene/?term=azo1695
azo1696	azo1696	paaF2	paaF2	1865171	1865971	+	putative enoyl-CoA hydratase	Putative enoyl-CoA hydratase. Homology to paaF of E. coli of 36%25 (sprot|PAAF_ECOLI(SRS)) FUNCTION: Could possibly oxidizes fatty acids using specific components (By similarity). CATALYTIC ACTIVITY: (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O. Pfam: Enoyl-CoA hydratase/isomerase family no signal peptide no TMHs%3B~Family membership	gene	gene1736	http://www.ncbi.nlm.nih.gov/gene/?term=azo1696
azo1697	azo1697	yjjV	yjjV	1865974	1866795	+	putative deoxyribonuclease	Putative deoxyribonuclease yjjV (EC 3.1.21.-). InterPro: Uncharacterized protein family UPF0006. TIGR00010: deoxyribonuclease TatD family.%3B~High confidence in function and specificity	gene	gene1737	http://www.ncbi.nlm.nih.gov/gene/?term=azo1697
azo1698	azo1698		azo1698	1866763	1867386	-	putative TetR family transcriptional regulator	Tetracycline repressor protein class G. Similar to SWISSPROT: sprot|TER7_VIBAN (21%25 Vibrio anguillarum (Listonella anguillarum)%2C tetracycline repressor protein class G). TETR IS THE REPRESSOR OF THE TETRACYCLINE RESISTANCE ELEMENT%3B ITS AMINO-TERMINAL REGION FORMS A HELIX-TURN-HELIX STRUCTURE AND BINDS DNA. BINDING OF TETRACYCLINE TO TETR REDUCES THE REPRESSOR AFFINITY FOR THE TETRACYCLINE RESISTANCE GENE (TETA) PROMOTER OPERATOR SITES. InterPro: IPR001647 HTH_TetR. Pfam: PF00440 Bacterial regulatory proteins%2C tetR family. HTH reporting nucleic acid binding motif.%3B~Family membership	gene	gene1738	http://www.ncbi.nlm.nih.gov/gene/?term=azo1698
azo1699	azo1699	etfB1	etfB1	1867564	1868313	+	electron transfer flavoprotein%2C beta subunit	Electron transfer flavoprotein%2C beta subunit. Homology to etfB of B. japonicum of 71%25 (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS%3B~High confidence in function and specificity	gene	gene1739	http://www.ncbi.nlm.nih.gov/gene/?term=azo1699
azo1700	azo1700	etfA1	etfA1	1868313	1869248	+	probable electron transfer flavoprotein%2C alpha subunit	Probable electron transfer flavoprotein%2C alpha subunit. Homology to etfA of B. japonicum of 65%25 (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1740	http://www.ncbi.nlm.nih.gov/gene/?term=azo1700
azo1701	azo1701		azo1701	1869332	1869952	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV1589 of Chromobacterium violaceum of 36%25 (trembl|Q7NXN7(SRS)). Has PF01891%3BCbiM%3B(IPR002751)This integral membrane protein is involved in cobalamin synthesis. No signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene1741	http://www.ncbi.nlm.nih.gov/gene/?term=azo1701
azo1702	azo1702		azo1702	1870013	1871812	+	probable acyl-CoA dehydrogenase	Acyl-CoA dehydrogenase short/branched chain specific mitochondrial precursor (2-methyl branched chain acyl-CoA dehydrogenase) (2-MEBCAD) (2-methylbutyryl-coenzyme A dehydrogenase) (2-methylbutyryl-CoA dehydrogenase). Has greatest activity toward short branched chain acyl- CoA derivative such as (s)-2-methylbutyryl-CoA isobutyryl-CoA and 2-methylhexanoyl-CoA as well as toward short straight chain acyl-CoAs such as butyryl-CoA and hexanoyl-CoA. Can use valproyl- CoA as substrate and may play a role in controlling the metabolic flux of valproic acid in the development of toxicity of this agent. Entry name TREMBL:Q8Y0W8 Identities %3D 358/596 (60%25) InterPro IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1.%3B~Family membership	gene	gene1742	http://www.ncbi.nlm.nih.gov/gene/?term=azo1702
azo1703	azo1703	cbf2	cbf2	1871903	1872685	-	putative cell binding factor	Cell binding factor 2 precursor (Major antigen peb4A). Homology to cbf2 of C. jejuni of 34%25 (sprot|CBF2_CAMJE). Belongs to the ppic/parvulin rotamase family InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase (IPR000297) Pfam: PPIC-type PPIASE domain signal peptide no TMH%3B~Family membership	gene	gene1743	http://www.ncbi.nlm.nih.gov/gene/?term=azo1703
azo1704	azo1704		azo1704	1872682	1872975	-	putative BolA-like protein	Region start changed from 1873054 to 1872976 (-78 bases)	gene	gene1744	http://www.ncbi.nlm.nih.gov/gene/?term=azo1704
azo1705	azo1705	yciI	yciI	1872972	1873271	-	putative cytoplasmic protein [yciI]	Putative cytoplasmic protein%2C61%25 Identity to SwissProt%3BP31070%2C TrEMBL%3BQ7CQF5. Has Signal peptide. Has PF03795%2C YCII-related domain%3BIPR005545%3B The majority of proteins in this family consist of a single copy of this domain%2C though it is also found as a repeat (Q9AJZ7). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function.	gene	gene1745	http://www.ncbi.nlm.nih.gov/gene/?term=azo1705
azo1706	azo1706	ispZ	ispZ	1873271	1873879	-	putative intracellular septation protein	Probable intracellular septation protein. Involved in cell division%3B probably involved in intracellular septation secG: preprotein translocase SecG subunit%3B~High confidence in function and specificity	gene	gene1746	http://www.ncbi.nlm.nih.gov/gene/?term=azo1706
azo1707	azo1707		azo1707	1873923	1874336	-	conserved hypothetical globin-like protein	Conserved hypothetical globin-like protein. Homology to bd2638 of B. bacteriovorus of 57%25 (tremblnew|CAE80431). Globins are heme-containing proteins involved in binding and/or transporting oxygen. This family of heme binding proteins are found mainly in bacteria. However they can also be found in some protozoa and plants as well. InterPro: Protozoan/cyanobacterial globins (IPR001486) Pfam: Bacterial-like globin. no signal peptide. no TMHs%3B~Family membership	gene	gene1747	http://www.ncbi.nlm.nih.gov/gene/?term=azo1707
azo1708	azo1708	envZ1	envZ1	1874441	1875826	-	probable osmolarity sensor protein	Probable osmolarity sensor protein EnvZ%2C%3B~Specificity unclear	gene	gene1748	http://www.ncbi.nlm.nih.gov/gene/?term=azo1708
azo1709	azo1709	ompR1	ompR1	1875852	1876598	-	response regulator	Transcriptional regulatory protein ompR%2CTrans_reg_C. IPR001789 Response_reg. Pfam: PF00486%3B trans_reg_C. PF00072 response_reg. SMART: SM00448 REC. THE N-TERMINUS OF THIS PROTEIN IS REQUIRED FOR THE TRANSCRIPTIONAL EXPRESSION OF BOTH MAJOR OUTER MEMBRANE PROTEIN GENES OMPF AND OMPC%3B ITS CARBOXYL-TERMINAL MOIETY MEDIATES THE MULTIMERIZATION OF THE OMPR PROTEIN. AS A MULTIMER IT TURNS ON THE EXPRESSION OF THE OMPC GENE%3B AS A MONOMER IT TURNS ON THE EXPRESSION OF THE OMPF GENE.%3B~High confidence in function and specificity	gene	gene1749	http://www.ncbi.nlm.nih.gov/gene/?term=azo1709
azo1710	azo1710		azo1710	1876813	1877142	+	hypothetical secreted protein	Hypothetical secreted protein. No homologs in the database. Signal Peptide present. No TMHs. No domains predicted	gene	gene1750	http://www.ncbi.nlm.nih.gov/gene/?term=azo1710
azo1711	azo1711		azo1711	1877212	1877901	+	conserved hypothetical glycoprotease	Conserved hypothetical glycoprotease. Homology to yeaZ of N. europae of 41%25 (trembl|Q82US9). InterPro: Glycoprotease (M22) metallo-protease family (IPR000905). Tigrfam: gcp: metalloendopeptidase putative glycoprotease family. Pfam: Glyocprotease family. no signal peptide. no TMHs.%3B~Family membership	gene	gene1751	http://www.ncbi.nlm.nih.gov/gene/?term=azo1711
azo1712	azo1712		azo1712	1877931	1878353	+	conserved hypothetical ribosomal-protein-alanine acetyltransferase	Conserved hypothetical ribosomal-protein-alanine acetyltransferase. Homology to ebA6491 of Azoarcus sp. EbN1 of 63%25 (gnl|keqq|eba:ebA6491(KEGG)). Pfam: Acetyltransferase (GNAT) family. Tigrfam: ribosomal-protein-alanine acetyltransferase. No signal peptide. No TMHs.%3B~Conserved hypothetical protein	gene	gene1752	http://www.ncbi.nlm.nih.gov/gene/?term=azo1712
azo1713	azo1713		azo1713	1878350	1879201	+	DNA-directed DNA polymerase	Putative DNA polymerase-related protein%2Cbacteriophage-type. TIGRFAM: rad23: UV excision repair protein Rad23%3B~Specificity unclear	gene	gene1753	http://www.ncbi.nlm.nih.gov/gene/?term=azo1713
azo1714	azo1714		azo1714	1879223	1880473	-	putative permease member of MFS	Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Homolog to the hypothetical protein ygeD%2C a putative resistence protein from Y. pestis(by similarity). 2A0121: H+ Antiporter protein%3B~High confidence in function and specificity	gene	gene1754	http://www.ncbi.nlm.nih.gov/gene/?term=azo1714
azo1715	azo1715	rbcR	rbcR	1880629	1881549	+	RuBisCO operon transcriptional regulator (RbcR)%2Cputative	Trans-acting transcriptional regulator of RuBisCO genes expression Putative HTH-type transcriptional regulator Contains 1 HTH lysR-type DNA-binding domain%2Cbelonds to the LysR family InterPro: Bacterial regulatory protein LysR family ModE_repress: ModE molybdate transport 32%25 HTH_LysR. IPR005119%3B LysR_subst. IPR009058%3B Wing_hlx_DNA_bnd. PF00126%3B HTH_1%3B 1. PF03466%3B LysR_substrate%3B 1%3B~High confidence in function and specificity	gene	gene1755	http://www.ncbi.nlm.nih.gov/gene/?term=azo1715
azo1716	azo1716	radA	radA	1881549	1882919	+	probable DNA repair protein RadA	Probable DNA repair protein radA. Homology to radA of E. coli of 60%25 (sprot|RADA_ECOLI) Are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins%2C peptides%2C glycopeptides. InterPro: DNA repair protein RadA (IPR004504) Tigrfam: sms: DNA repair protein RadA no signal peptide no TMH%3B~High confidence in function and specificity	gene	gene1756	http://www.ncbi.nlm.nih.gov/gene/?term=azo1716
azo1717	azo1717		azo1717	1882984	1883250	-	Hypothetical protein	Hypothetical protein . Extremely weak homology with any hits in the database. No Features%2Csignal Peptide%2Cmotifs are known domains present.	gene	gene1757	http://www.ncbi.nlm.nih.gov/gene/?term=azo1717
azo1718	azo1718		azo1718	1883575	1884198	+	Hypothetical protein	Hypothetical protein%2C has very weak homology with hits in the Database(TrEMBL%3BQ63I29) Coils2 program reporting presence of coiled-coiled.	gene	gene1758	http://www.ncbi.nlm.nih.gov/gene/?term=azo1718
azo1719	azo1719		azo1719	1884227	1885696	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA7025 of Azoarcus sp. EbN1 of 68%25 (gnl|keqq|eba:ebA7025(KEGG)). Pfam: Glycos_transf_2. Diverse family%2C transferring sugar from UDP-glucose%2C UDP-N-acetyl- galactosamine%2C GDP-mannose or CDP-abequose%2C to a range of substrates including cellulose%2C dolichol phosphate and teichoic acids. No signal peptide. No TMHs	gene	gene1759	http://www.ncbi.nlm.nih.gov/gene/?term=azo1719
azo1720	azo1720		azo1720	1885699	1886832	+	glycosyltransferase	Family membership	gene	gene1760	http://www.ncbi.nlm.nih.gov/gene/?term=azo1720
azo1721	azo1721		azo1721	1886756	1887814	-	heptosyltransferase	Similar to waaQ.%3B~Family membership	gene	gene1761	http://www.ncbi.nlm.nih.gov/gene/?term=azo1721
azo1722	azo1722		azo1722	1887936	1888283	+	Hypothetical protein	Hypothetical protein%2C weak homology with hits. TrEMBL%3BQ9KPT2(45%25 identity) No domains%2C repeats%2C motifs or features present.	gene	gene1762	http://www.ncbi.nlm.nih.gov/gene/?term=azo1722
azo1723	azo1723		azo1723	1888362	1889357	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to blr5713 of B.japonicum of 45%25 (tremble:Q89IC6). No domains predicted. No TMHs. SignalP 3.0 predicts no signal peptide.	gene	gene1763	http://www.ncbi.nlm.nih.gov/gene/?term=azo1723
azo1724	azo1724		azo1724	1889404	1889835	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to SMA1058 of S.meliloti of 48%25 (trembl:Q92ZB7). No domains predicted. No signal peptide. No TMHs	gene	gene1764	http://www.ncbi.nlm.nih.gov/gene/?term=azo1724
azo1725	azo1725	glgB1	glgB1	1889835	1891748	+	putative 1%2C4-alpha-glucan branching enzyme	14-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen branching enzyme) (BE) (14-alpha-D-glucan:14-alpha-D-glucan 6-glucosyl-transferase).Catalyzes the formation of the alpha-16-glucosidic linkages in glycogen by scission of a 14-alpha-linked oligosaccharide from growing alpha-14-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-16 position. 54%25 Alp_amyl_cat_sub.IPR004193%3B Glyco_hydro_13N. Pfam:PF00128%3B Alpha-amylase%3B 1. PF02922%3B Isoamylase_N%3B 2.%3B~High confidence in function and specificity	gene	gene1765	http://www.ncbi.nlm.nih.gov/gene/?term=azo1725
azo1726	azo1726	pep1	pep1	1891732	1893780	+	putative glucanohydrolase	O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates%2C or between a carbohydrate and a non-carbohydrate moiety.Probable glucanohydrolase Pep1B. Could convert glycogen into units that may be subsequently converted into trehalose.Belongs to family 13 of glycosyl hydrolases. Glge subfamily. 47%25 Alpha_amyl_cat. Pfam:PF00128%3B alpha-amylase%3B 1.%3B~High confidence in function and specificity	gene	gene1766	http://www.ncbi.nlm.nih.gov/gene/?term=azo1726
azo1727	azo1727	treS	treS	1893796	1897116	+	putative trehalose synthase	Trehalose synthase(Maltose alpha-D-glucosyltransferase).Catalyzes the conversion of maltose into alpha%2Calpha- trehalose by transglucosylation. 54%25 Alp_amyl_cat_sub.IPR006047%3B Alpha_amyl_cat.InterPro: Glycoside hydrolase family 13. Pfam:PF00128%3B alpha-amylase%3B 1.%3B~High confidence in function and specificity	gene	gene1767	http://www.ncbi.nlm.nih.gov/gene/?term=azo1727
azo1728	azo1728		azo1728	1897139	1897705	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to BPP3320 of B.bronchiseptica of 31%25 (tremble:Q7W5H1). No domains predicted. Signap P reporting signal peptide. No TMH reported.%3B~Conserved hypothetical protein	gene	gene1768	http://www.ncbi.nlm.nih.gov/gene/?term=azo1728
azo1729	azo1729		azo1729	1897982	1899142	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to mm2747 of M. mazei of 39%25 (trembl|Q8PTG8(SRS). no domains predicted. no TMHs. no signal peptide.	gene	gene1769	http://www.ncbi.nlm.nih.gov/gene/?term=azo1729
azo1730	azo1730		azo1730	1899198	1899947	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA6994 of Azoarcus sp. EbN1 of 59%25 (gnl|keqq|eba:ebA6994(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene1770	http://www.ncbi.nlm.nih.gov/gene/?term=azo1730
azo1731	azo1731		azo1731	1899978	1900238	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domain prediction. No signal peptide. 1 TMH	gene	gene1771	http://www.ncbi.nlm.nih.gov/gene/?term=azo1731
azo1732	azo1732		azo1732	1900291	1901157	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2C%3B~Family membership	gene	gene1772	http://www.ncbi.nlm.nih.gov/gene/?term=azo1732
azo1733	azo1733		azo1733	1901147	1901629	-	hypothetical protein	Hypothetical protein with unknown function. Domain predicted by Pfam%2C PF01381 Helix-turn-helix.	gene	gene1773	http://www.ncbi.nlm.nih.gov/gene/?term=azo1733
azo1734	azo1734		azo1734	1901759	1904050	+	conserved hypothetical protein	Entry name TREMBL:Q89PM4 Identities %3D 257/546 (47%25) Prediction: Non-secretory protein Signal peptide probability: 0.018 Number of predicted TMHs: 0 pts-lac: PTS system lactose/cellobios	gene	gene1774	http://www.ncbi.nlm.nih.gov/gene/?term=azo1734
azo1735	azo1735		azo1735	1904135	1904476	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rO1139 of S. meliloti of 48%25 (trembl|Q92QZ6). No domains predicted. No signal peptide. No TMHs	gene	gene1775	http://www.ncbi.nlm.nih.gov/gene/?term=azo1735
azo1736	azo1736		azo1736	1904512	1905063	-	Hypothetical protein	Hypothetical protein. No good homology with any Hits in the database.	gene	gene1776	http://www.ncbi.nlm.nih.gov/gene/?term=azo1736
azo1737	azo1737		azo1737	1905343	1906143	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA6987 of Azoarcus sp. EbN1 of 62%25 (gnl|keqq|eba:ebA6987(KEGG)). no domains predicted. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene1777	http://www.ncbi.nlm.nih.gov/gene/?term=azo1737
azo1738	azo1738		azo1738	1906182	1906676	+	hypothetical protein	Hypothetical protein has weak homology to Transglycosylase of penicillin-binding protein 1c(pbpC).TrEMBL:Q8ZN47(56%25). ***Contains PRC-barrel domain(pfam05239). The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long%2C and found widely represented in bacteria%2C archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM%2C which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain. No Signal Peptide reported. No TMH's reported.	gene	gene1778	http://www.ncbi.nlm.nih.gov/gene/?term=azo1738
azo1739	azo1739		azo1739	1906742	1907686	-	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:O32291 (45%25 identity)%3B SWISSPROT:P54554 (28%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene1779	http://www.ncbi.nlm.nih.gov/gene/?term=azo1739
azo1740	azo1740		azo1740	1907834	1908745	+	conserved hypothetical protein	conserved hypothetical protein%2C 49%25 identity to TrEMBL%3BQ7W766. Has SMART%3BSM00559%3BKu78%3BKu70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen%3B(IPR006164)%3BThis is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain%2C that also occurs in bacterial hypothetical proteins.	gene	gene1780	http://www.ncbi.nlm.nih.gov/gene/?term=azo1740
azo1741	azo1741		azo1741	1908782	1911427	+	hypothetical protein	Putative DNA-ligase like protein Rv0938/MT0965. dnl1: DNA ligase I ATP-dependent.%3B~Specificity unclear%3B~ORF4	gene	gene1781	http://www.ncbi.nlm.nih.gov/gene/?term=azo1741
azo1742	azo1742		azo1742	1911701	1912390	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal peptide present. No TMHs.	gene	gene1782	http://www.ncbi.nlm.nih.gov/gene/?term=azo1742
azo1743	azo1743		azo1743	1912374	1913198	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA6983 of Azoarcus sp. EbN1 of 50%25 (gnl|keqq|eba:ebA6983(KEGG)). Pfam: N-formylglutamate amidohydrolase. Formylglutamate amidohydrolase (FGase) catalyses the terminal reaction in the five-step pathway for histidine utilisation in Pseudomonas putida. By this action%2C N-formyl-L-glutamate (FG) is hydrolysed to produce L-glutamate plus formate. no signal peptide. no TMHs	gene	gene1783	http://www.ncbi.nlm.nih.gov/gene/?term=azo1743
azo1744	azo1744		azo1744	1913153	1914424	-	Glutamate-cysteine ligase	Hypothetical protein%2C32%25 identity (49%25 similarity) to SwissProt%3BO27977 Has PF04107%3BGlutamate-cysteine ligase family 2(GCS2)%3B(IPR006336)Also known as gamma-glutamylcysteine synthetase and gamma-ECS. This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea%2C bacteria and plants. May and Leaver [1] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes%2Cfrom an ancestral bacterial enzyme. They also state that Arabidopsis thaliana gamma-glutamylcysteine synthetase is structurally unrelated to mammalian%2C yeast and Escherichia coli homologues. In plants%2C there are separate cytosolic and chloroplast forms of the enzyme.	gene	gene1784	http://www.ncbi.nlm.nih.gov/gene/?term=azo1744
azo1745	azo1745	rimK	rimK	1914421	1915890	-	ribosomal protein S6 modification protein-related protein	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) rimK_fam: S6 modification enzyme RimK%3B~Specificity unclear	gene	gene1785	http://www.ncbi.nlm.nih.gov/gene/?term=azo1745
azo1746	azo1746		azo1746	1915934	1916671	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to TdenA01000334 of Thiobacillus denitrificans of 67%25 (gi|52008038|ref|ZP_00335415.1|(NBCI ENTREZ)). No domains present. No signal peptide. No TMHs.	gene	gene1786	http://www.ncbi.nlm.nih.gov/gene/?term=azo1746
azo1747	azo1747		azo1747	1916675	1917442	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No TMHs Signal Peptide present. Has PS50914%3B BON%3BThe BON (bacterial OsmY and nodulation) domain is found in the bacterial osmotic-shock-resistance protein OsmY%2C a family of haemolysins%2C a group of nodulation specificity proteins and secretory channels%2C and several hypothetical proteins. It is typically about 60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions.	gene	gene1787	http://www.ncbi.nlm.nih.gov/gene/?term=azo1747
azo1748	azo1748		azo1748	1917567	1918007	+	conserved hypothetical protein	Hypothetical protein yhcV. TREMBL:Q92V69:54%25identity%2C 76%25 similarity. TREMBL:Q81UY6 Pfam:CBS domain%2C Anticodon binding domain. TIGRFAM: KpsF/GutQ family proteins. No signal peptide or transmembrane helix reported. CBS domains are small intracellular modules of unknown function. They are mostly found in 2 or four copies within a protein. Pairs of CBS domains dimerise to form a stable globular domain. Two CBS domains are found in inosine-monophosphate dehydrogenase from all species%2C however the CBS domains are not needed for activity. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet.. A number of disease states are associated with CBS-containing proteins including homocystinuria%2C Becker's and Thomsen disease. InterPro: CBS domain urease_gam: urease gamma subunit%3B~Function unclear	gene	gene1788	http://www.ncbi.nlm.nih.gov/gene/?term=azo1748
azo1749	azo1749		azo1749	1918070	1918228	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to r02018 of S. meliloti of 72%25 (trembl|Q92K67(SRS). no damains predicted .signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene1789	http://www.ncbi.nlm.nih.gov/gene/?term=azo1749
azo1750	azo1750		azo1750	1918212	1918685	+	hypothetical membrane protein	Hypothetical membrane protein. No homology of the entire protein to the data bank. Has DUF1328(Protein of Unknown family) domain. PF07043%3BIPR009760%3B This family consists of several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown. no signal peptide. 3 TMHs	gene	gene1790	http://www.ncbi.nlm.nih.gov/gene/?term=azo1750
azo1751	azo1751		azo1751	1918699	1919052	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA6968 of Azoarcus sp. EbN1 of 38%25 (gnl|keqq|eba:ebA6968(KEGG)). Pfam: Putative phospholipid-binding domain This domain is found in a family of osmotic shock protection proteins (e.g. P27291). It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene1791	http://www.ncbi.nlm.nih.gov/gene/?term=azo1751
azo1752	azo1752		azo1752	1919143	1919466	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein: Homology to ne0129 of N. europaea of 43%25 (trembl|Q82XW6). Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene1792	http://www.ncbi.nlm.nih.gov/gene/?term=azo1752
azo1753	azo1753	cls2	cls2	1919438	1920847	+	putative cardiolipin synthetase	Function:- Cardiolipin synthetase (CL synthase)%2Ccls. Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. Entry name :-SWISSPROT:CLS_ECOLI Prim. accession # P31071 InterPro:IPR001736%3B PLD. Identities %3D 114/379 (30%25) Pfam:PF00614%3B PLDc%3B 2. TMhelix%3D1 Signal peptide probability: 1.0%3B~Family membership	gene	gene1793	http://www.ncbi.nlm.nih.gov/gene/?term=azo1753
azo1754	azo1754		azo1754	1920896	1921315	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology Avin02003871 of Azotobacter vinelandii of 47%25 (gi|53610588|ref|ZP_00089122.2|(NBCI ENTREZ)). Has PF03653%2C Uncharacterised protein family (UPF0093). Interpro: IPR005265%3B Cons_hypoth701%3B It appears the conserved hypothetical integral membrane proteins of this family are found only in gram negative bacteria and their function is unknown. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene1794	http://www.ncbi.nlm.nih.gov/gene/?term=azo1754
azo1755	azo1755		azo1755	1921312	1921959	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology ebA159 of Azoarcus sp. EbN1 of 52%25 (gnl|keqq|eba:ebA159(KEGG)). No domains predicted. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene1795	http://www.ncbi.nlm.nih.gov/gene/?term=azo1755
azo1756	azo1756	qoxB	qoxB	1922011	1922682	+	probable quniol oxidase%2C subunit II	Probable quniol oxidase%2C subunit II. Homology to qoxB of Rhodobacter sphaeroides of 41%25 (gi|4416093|gb|AAD20226.1|(NBCI ENTREZ)). InterPro: Cytochrome c oxidase subunit II (IPR002429)%3B Cu(A) centre of cytochrome c oxidase%2C subunit II and nitrous oxide reductase (IPR001505). Pfam: Cytochrome c oxidase subunit II%2C periplasmic. no signal peptide. 2 TMHs%3B~Family membership	gene	gene1796	http://www.ncbi.nlm.nih.gov/gene/?term=azo1756
azo1757	azo1757	qoxA	qoxA	1922679	1925261	+	probable quinol oxidase%2C subunit I	Probable quinol oxidase%2C subunit I. Homology to qoxA of R. sphaeroides of 52%25 (trembl|Q9Z605). InterPro: Cytochrome c oxidase subunit III (IPR000298)%3B Cytochrome coxidase%2C subunit I (IPR000883) Pfam: Cytochrom C and quinol oxidase poly polypeptide signal peptide 17 TMHs%3B~Family membership	gene	gene1797	http://www.ncbi.nlm.nih.gov/gene/?term=azo1757
azo1758	azo1758		azo1758	1925258	1925599	+	hypothetical membrane protein	Hypothetical membrane protein. no homology to the data bank. no domains predicted. no signal peptide. 3 TMHs	gene	gene1798	http://www.ncbi.nlm.nih.gov/gene/?term=azo1758
azo1759	azo1759		azo1759	1925590	1926420	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Avin02003353 of Azotobacter vinelandii of 48%25 (gi|53610930|ref|ZP_00342175.1|(NBCI ENTREZ)). No domains predicted. signal peptide. 7 TMHs%3B~Conserved hypothetical protein	gene	gene1799	http://www.ncbi.nlm.nih.gov/gene/?term=azo1759
azo1760	azo1760		azo1760	1926417	1927421	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8KUH7 (41%25 identity)%3B SWISSPROT:P14802 (30%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene1800	http://www.ncbi.nlm.nih.gov/gene/?term=azo1760
azo1761	azo1761		azo1761	1927438	1931043	-	hypothetical protein	Hypothetical protein%2C Shares 45%25 similarity with hypothetical protein [Chromobacterium violaceum]TrEMBL Q7NY28. Signal Peptide present. No TMH's reported. Has pfam05359%2C DUF748%2C Domain of Unknown Function (DUF748).%3B~Specificity unclear	gene	gene1801	http://www.ncbi.nlm.nih.gov/gene/?term=azo1761
azo1762	azo1762		azo1762	1931040	1932170	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to XCC0079 of Xanthomonas campestris (trembl|Q8PEA2(SRS)). InterPro:IPR002549%3B UPF0118. Pfam PF01594%3B domain of DUF20 present. no signal peptide. 8 TMHs%3B~Conserved hypothetical protein	gene	gene1802	http://www.ncbi.nlm.nih.gov/gene/?term=azo1762
azo1763	azo1763	mucD3	mucD3	1932167	1933585	-	probable serine protease MucD	Probable serine protease MucD. Homology to mucD of P. aeruginosa of 40%25 (trembl|Q57155). InterPro: Serine proteases trypsin family (IPR001254)%3B Chymotrypsin serine protease family (S1) (IPR001314)%3B HtrA/DegQ protease family (IPR001940)%3B PDZ domain (also known as DHR or GLGF) (IPR001478) Pfam: Trypsin%3B PDZ domain (also known as DHR or GLGF) signal peptide no TMHs TIGR00292: thiazole biosynthesis enzyme%3B~High confidence in function and specificity	gene	gene1803	http://www.ncbi.nlm.nih.gov/gene/?term=azo1763
azo1764	azo1764		azo1764	1933759	1934097	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bb3588 of B. bronchiseptica of 41%25 (trembl|Q7WGK1). Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins. signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene1804	http://www.ncbi.nlm.nih.gov/gene/?term=azo1764
azo1765	azo1765		azo1765	1934286	1934459	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Atu4467 of Agrobacterium tumefaciens of 58%25 (trembl|Q8U7I2). Has PF07043%2C Protein of unknown function (DUF1328)%3BIPR009760%3BThis family consists of several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown. signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene1805	http://www.ncbi.nlm.nih.gov/gene/?term=azo1765
azo1766	azo1766	ndh1	ndh1	1934490	1935986	-	probable NADH dehydrogenase	Probable NADH dehydrogenase. Homology to ndh of P. fluorescens of 48%25 (trembl|Q9KGX0). TRANSFER OF ELECTRONS FROM NADH TO THE RESPIRATORY CHAIN. THE IMMEDIATE ELECTRON ACCEPTOR FOR THE ENZYME IS BELIEVED TO BE UBIQUINONE. DOES NOT COUPLE THE REDOX REACTION TO PROTON TRANSLOCATION. Interpro: FAD-dependent pyridine nucleotide-dislphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disluphide oxidoreductase no signal peptide no TMHs%3B~Family membership	gene	gene1806	http://www.ncbi.nlm.nih.gov/gene/?term=azo1766
azo1767	azo1767		azo1767	1936009	1936383	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of Polyangium cellulosum of 69%25 (tremble:Q9L8D1). Has PF07100%3B(IPR009794)Protein of unknown function (DUF1362)%3BThis family consists of several hypothetical bacterial proteins of around 125 resides in length. The function of this family is unknown. No signal peptide or TMH reported present.	gene	gene1807	http://www.ncbi.nlm.nih.gov/gene/?term=azo1767
azo1768	azo1768		azo1768	1936817	1937137	+	hypothetical membrane protein	Hypothetical membrane protein. no homology of the entire protein to the data bank. no domains predicted no signal peptide 1 TMH	gene	gene1808	http://www.ncbi.nlm.nih.gov/gene/?term=azo1768
azo1769	azo1769		azo1769	1937286	1938023	-	conserved hypothetical protein	Conserved hypothetical protein. Weak homology with hits in the database. Coils2 program predicts presence of coiled coil.	gene	gene1809	http://www.ncbi.nlm.nih.gov/gene/?term=azo1769
azo1770	azo1770		azo1770	1938484	1938891	+	conserved hypothetical DnaK suppressor protein	Conserved hypothetical DnaK suppressor protein. Homology to BPSS2280 of Burkholderia pseudomallei of 34%25 (gnl|keqq|bps:BPSS2280(KEGG). Has PF01258%2C Prokaryotic dksA/traR C4-type zinc finger%3B IPR000962 Znf_DskA/TraR%3B The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout and deletion experiments have shown the gene to be non-essential%2C mutations causing a mild sensitivity to UV light%2C but not affecting DNA recombination. The protein contains a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar domain include the traR gene product%2C present on the conjugative plasmid F%2Cand several hypothetical proteins from bacteria and bacteriophages. No TMHs. No signal peptide.%3B~Conserved hypothetical protein	gene	gene1810	http://www.ncbi.nlm.nih.gov/gene/?term=azo1770
azo1771	azo1771	cioA	cioA	1938905	1940323	+	probable cyanide insensitive terminal oxidase%2Csubunit I	Probable cyanide insensitive terminal oxidase%2Csubunit I Homology to cioA of P. aeruginose of 44%25 (TREMBL:O07440) InterPro: Cytochrome bd ubiquinol oxidase subunit I (IPR002585) Pfam: Bacterial cytochrome ubiquinol oxidase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1811	http://www.ncbi.nlm.nih.gov/gene/?term=azo1771
azo1772	azo1772	cioB	cioB	1940316	1941338	+	probable cyanide insensitive terminal oxidase%2Csubunit II	Probable cyanide insensitive terminal oxidase%2Csubunit II. Homology to cioB of P. aeruginosa of 40%25 (trembl|O07441). Tigrfam: cydB: cytochrome d ubiquinol oxidase%2C subunit II Pfam: cytochrome oxidase%2C subunit II no signal peptide 8 TMHs%3B~High confidence in function and specificity	gene	gene1812	http://www.ncbi.nlm.nih.gov/gene/?term=azo1772
azo1773	azo1773		azo1773	1941818	1942150	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of P. putida of 58%25 (trembl|O68643). no TMHs. no signal peptide. No domains predicted.	gene	gene1813	http://www.ncbi.nlm.nih.gov/gene/?term=azo1773
azo1774	azo1774		azo1774	1942244	1943044	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Avin02003958 of Azotobacter vinelandii of 38%25 (gi|53610498|ref|ZP_00089565.2|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene1814	http://www.ncbi.nlm.nih.gov/gene/?term=azo1774
azo1775	azo1775		azo1775	1943128	1943709	-	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH	gene	gene1815	http://www.ncbi.nlm.nih.gov/gene/?term=azo1775
azo1776	azo1776		azo1776	1943822	1944037	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene1816	http://www.ncbi.nlm.nih.gov/gene/?term=azo1776
azo1777	azo1777		azo1777	1944084	1945133	+	hypothetical LuxR-family transcriptional regulator	Hypothetical LuxR-family transcriptional regulator. Similarity to other known proteins (dctR or narP or esaR) only in the domain part. Pfam: PF00196 Bacterial regulatory proteins%2C luxR family. HTH reporting nucleic acid binding motif. The 'helix-turn-helix' DNA-binding motif of this protein is located in the C-terminal section of the sequence.%3B~Conserved hypothetical protein	gene	gene1817	http://www.ncbi.nlm.nih.gov/gene/?term=azo1777
azo1778	azo1778		azo1778	1945382	1945816	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 3 TMHs	gene	gene1818	http://www.ncbi.nlm.nih.gov/gene/?term=azo1778
azo1779	azo1779	ampD1	ampD1	1945848	1946708	+	N-acetylmuramoyl-L-alanine amidase	This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). InterPro (IPR002502): N-acetylmuramoyl-L-alanine amidase (family 2). Pfam (PF01510): N-acetylmuramoyl-L-alanine amidase.%3B~Family membership	gene	gene1819	http://www.ncbi.nlm.nih.gov/gene/?term=azo1779
azo1780	azo1780		azo1780	1946826	1947452	+	hypothetical protein	Hypothetical protein. no homology of the entire protein to the data bank InterPro: Putative peptidoglycan binding domain 1 (IPR002477) Pfam: Putative peptidoglycan binding domain 1 no signal peptide no TMHs	gene	gene1820	http://www.ncbi.nlm.nih.gov/gene/?term=azo1780
azo1781	azo1781		azo1781	1948908	1949294	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to map2952a of M. paratuberculosis of 51%25 (AAS05269). Pfam: CahB%3B Rho terminator factor%2C N-terminal. domain no signal peptide. no TMHs	gene	gene1821	http://www.ncbi.nlm.nih.gov/gene/?term=azo1781
azo1782	azo1782		azo1782	1949308	1950150	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to mlr2853 of M. loti of 31%25 (trembl|Q98HI7). Tigrfam: xth: exodeoxyribonuclease III (xth). All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA. Pfam: AP endonuclease family I. no signal peptide. no TMHs	gene	gene1822	http://www.ncbi.nlm.nih.gov/gene/?term=azo1782
azo1783	azo1783		azo1783	1950122	1952401	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA6946 of Azoarcus sp. EbN1 of 64%25 (gnl|keqq|eba:ebA6946(KEGG)). Pfam: Pospholipase D%2C active site motife%3B DedA family. no signal peptide. 6 TMHs%3B~Conserved hypothetical protein	gene	gene1823	http://www.ncbi.nlm.nih.gov/gene/?term=azo1783
azo1784	azo1784	bfr3	bfr3	1952414	1952968	-	putative bacterioferritin	Bacterioferritin (BFR) (Cytochrome B-1) (Cytochrome B-557). In E. coli is an iron-storage protein consisting of 24 identical subunits that pack together to form a highly symmetrical%2C nearly spherical shell surrounding a central cavity of about 8 nm diameter.X-ray crystallographic studies have revealed a close structural similarity between BFR and the ferritins%2C a family of iron-storage proteins found in both eukaryota and prokaryota. Key role in iron homeostasis.InterPro: Bacterioferritin. Non-secretory protein bfr: bacterioferritin%3B~High confidence in function and specificity	gene	gene1824	http://www.ncbi.nlm.nih.gov/gene/?term=azo1784
azo1785	azo1785		azo1785	1953247	1954419	+	glycosyltransferase	InterPro: Glycosyl transferases group 1%3B~Family membership	gene	gene1825	http://www.ncbi.nlm.nih.gov/gene/?term=azo1785
azo1786	azo1786		azo1786	1954400	1954948	+	conserved hypothetical phosphoesterase family protein	Conserved hypothetical phosphoesterase family protein. Homology to ebA6940 of Azoarcus sp. EbN1 of 65%25 (gnl|keqq|eba:ebA6940(KEGG)). InterPro IPR008934%3B AcPase_VanPerase. IPR000326%3B PA_PTPase. Pfam PF01569%3B PAP2%3B Number of predicted TMHs: 3#. Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Conserved hypothetical protein	gene	gene1826	http://www.ncbi.nlm.nih.gov/gene/?term=azo1786
azo1787	azo1787		azo1787	1954864	1955775	-	conserved hypothetical protein	TIGR00093: conserved hypothetical protein%3B~Function unclear	gene	gene1827	http://www.ncbi.nlm.nih.gov/gene/?term=azo1787
azo1788	azo1788		azo1788	1955772	1956905	-	glycosyltransferase	InterPro: Glycosyl transferases group 1%3B~Family membership	gene	gene1828	http://www.ncbi.nlm.nih.gov/gene/?term=azo1788
azo1789	azo1789		azo1789	1957010	1957564	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to bp0770 of B. pertussis of 37%25 (TrEMBL:Q7VZW1). no domains reported. no signal peptide. no TMHs	gene	gene1829	http://www.ncbi.nlm.nih.gov/gene/?term=azo1789
azo1790	azo1790	rpoN2	rpoN2	1957602	1959068	-	RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Similar to SWISSPROT: sprot|RP54_ALCEU (46%25 Alcaligenes eutrophus (Ralstonia eutropha)%2C RpoN or NtrA) / sprot|RP54_ECOLI (41%25 Escherichia coli%2C RpoN or NtrA) Pfam:PF00309 Sigma54_AID. PF04963 Sigma54_CBD. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene1830	http://www.ncbi.nlm.nih.gov/gene/?term=azo1790
azo1791	azo1791		azo1791	1959413	1960084	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA6930 of Azoarcus sp. EbN1 of 37%25 (gnl|keqq|eba:ebA6930(KEGG)). No domains predicted. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene1831	http://www.ncbi.nlm.nih.gov/gene/?term=azo1791
azo1792	azo1792		azo1792	1960085	1961215	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to xcc0923 of X. campestris of 46%25 (trembl|Q8PC30). InterPro: Uncharacterized protein family UPF0003 (IPR006685). Pfam: Mechanosensitive ion chanell. Mechanosensitive (MS) channels provide protection against hypo-osmotic shock%2C responding both to stretching of the cell membrane and to membrane depolarisation. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene1832	http://www.ncbi.nlm.nih.gov/gene/?term=azo1792
azo1793	azo1793		azo1793	1961212	1962507	+	conserved hypothetical protein	Conserved hypothetical protein.Weak Homology with Hits in the Database. Has IPR000967 Znf_NFX1%3B(SMART%3BSM00438)This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C%2C where X can be any amino acid%2C and numbers in brackets indicate the number of residues. The two position can be either his or cys. This domain is found in the human transcriptional repressor NK-X1%2C a repressor of HLA-DRA transcription%3B the Drosophila shuttle craft protein%2C which plays an essential role during the late stages of embryonic neurogenesis%3B and a yeast hypothetical protein YNL023C. No signal peptide or TMH reported present.	gene	gene1833	http://www.ncbi.nlm.nih.gov/gene/?term=azo1793
azo1794	azo1794	glgX	glgX	1962504	1964684	+	putative glycogen debranching enzyme	Glycogen operon protein GlgX homolog.Hydrolyzes the alpha-1%2C6-glucosidic linkages in glycogen which has first been partially depolymerized by phosphorylase. Shows only very little activity with native glycogen. 46%25 Alpha_amyl_cat.IPR004193%3B Glyco_hydro_13N. Pfam:PF00128%3B alpha-amylase%3B 1.F02922%3B isoamylase_N%3B 1.%3B~High confidence in function and specificity	gene	gene1834	http://www.ncbi.nlm.nih.gov/gene/?term=azo1794
azo1795	azo1795		azo1795	1964688	1965785	+	conserved hypothetical protein	DNA topoisomerase I (EC 5.99.1.2). The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another. cbiB: cobalamin biosynthesis protein.%3B~Specificity unclear	gene	gene1835	http://www.ncbi.nlm.nih.gov/gene/?term=azo1795
azo1796	azo1796	glgB2	glgB2	1965782	1967599	+	putative 1%2C4-alpha-glucan branching enzyme	14-alpha-glucan branching enzyme (Glycogen branching enzyme)(BE) (14-alpha-D-glucan:14-alpha-D-glucan 6-glucosyl- transferase). Catalyzes the formation of the alpha-16-glucosidic linkages in glycogen by scission of a 14-alpha-linked oligosaccharide from growing alpha-14-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-16 position. 36%25 Alpha_amyl_cat.IPR006407%3BGlgB.IPR004193%3BGlyco_hydro_13N. Pfam:PF00128%3B Alpha-amylase%3B 1.PF02922%3B Isoamylase_N%3B 1. TIGRFAMs:TIGR01515%3B branching_enzym%3B 1.%3B~High confidence in function and specificity	gene	gene1836	http://www.ncbi.nlm.nih.gov/gene/?term=azo1796
azo1797	azo1797	glgC	glgC	1967706	1968920	+	putative glucose-1-phosphate adenylyltransferase	Glucose-1-phosphate adenylyltransferase(ADP-glucose synthase)(ADP-glucose pyrophosphorylase)(ADPGlc PPase). 42%25 ADP_Glu_pyroP.IPR005835%3B NTP_transferase. Pfam:PF00483%3B NTP_transferase%3B 1. TIGR:MT1251.%3B~High confidence in function and specificity	gene	gene1837	http://www.ncbi.nlm.nih.gov/gene/?term=azo1797
azo1798	azo1798	treZ	treZ	1968917	1970977	+	putative Malto-oligosyltrehalose trehalohydrolase	Malto-oligosyltrehalose trehalohydrolase(MTHase) (4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase) (Maltooligosyl trehalose trehalohydrolase).Involved in the trehalose biosynthesis%2Chydrolysing alpha-(1->4)-d-glucosidic linkage in 4-alpha-d-{(1->4)-alpha-d-glucanosyl}(n) trehalose to yield trehalose and alpha-(1->4)-d-glucan. 42%25 Alpha_amyl_cat.IPR004193%3B Glyco_hydro_13N. Pfam:PF00128%3B alpha-amylase%3B 1.PF02922%3B isoamylase_N%3B 1.%3B~Specificity unclear	gene	gene1838	http://www.ncbi.nlm.nih.gov/gene/?term=azo1798
azo1799	azo1799		azo1799	1971003	1976207	+	hypothetical protein	The first part of the protein (2202 bases) is 37%25 Glyco_hydro_77. Pfam:PF02446%3B 4A_glucanotrans%3B 1.TIGRFAMs:TIGR00217%3B malQ%3B 1. GO:5975/4134. The second part of the protein (from the base 2128 to the end) is 39%25%3B~Function unclear%3B~ORF5	gene	gene1839	http://www.ncbi.nlm.nih.gov/gene/?term=azo1799
azo1800	azo1800	glk1	glk1	1976211	1977182	-	putative glucokinase	Glucokinase (EC 2.7.1.2) (Glucose kinase). Catalytic activity: ATP + d-glucose %3D ADP+ d-glucose 6-phosphate. 34%25 Glucokinase. Pfam:PF02685%3B Glucokinase%3B 1. TIGRFAMs:TIGR00749%3B glk%3B 1.%3B~High confidence in function and specificity	gene	gene1840	http://www.ncbi.nlm.nih.gov/gene/?term=azo1800
azo1801	azo1801	glgA	glgA	1977251	1978927	+	putative glycogen synthase	Glycogen synthase (Starch [bacterial glycogen] synthase) GlgA. Synthesizes alpha-14-glucan chains using ADP-glucose. 46%25 Glyco_trans_1. Pfam:PF00534%3B Glycos_transf_1%3B 1.%3B~High confidence in function and specificity	gene	gene1841	http://www.ncbi.nlm.nih.gov/gene/?term=azo1801
azo1802	azo1802		azo1802	1978903	1979856	-	putative dTDP-glucose 4%2C6-dehydratase	67%25 Epimerase_Dh. Pfam: PF01370%3B Epimerase%3B 1. No signal peptide.%3B~Family membership	gene	gene1842	http://www.ncbi.nlm.nih.gov/gene/?term=azo1802
azo1803	azo1803		azo1803	1979858	1980823	-	conserved hypothetical glycosyltransferase	Conserved hypothetical glycosyltransferase. Homology to ebA6914 of Azoarcus sp. EbN1 of 72%25 (gnl|keqq|eba:ebA6914(KEGG)). Pfam: Glycos_transf_1. Interpro: Glycosyl transferase%2C group 1. Proteins containign this domain transfer UDP%2C ADP%2C GDP or CMP linked sugars to a variety of substrates%2C including glycogen%2C fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis%2Clipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. No signal peptide. No TMHs.%3B~Conserved hypothetical protein	gene	gene1843	http://www.ncbi.nlm.nih.gov/gene/?term=azo1803
azo1804	azo1804		azo1804	1980849	1981829	-	membrane-anchored glycosyltransferase	Hypothetical 55.3 kDa protein in thcA 5region (ORF1).%3B~High confidence in function and specificity	gene	gene1844	http://www.ncbi.nlm.nih.gov/gene/?term=azo1804
azo1805	azo1805		azo1805	1981826	1983562	-	conserved hypothetical carbamoyltransferase	Hypothetical conserved hypothetical cabamoyltransferase. Homology to sco6480 of S. coelicolor of 49%25 (trembl|Q8CJN9). Pfam: Carbamyltransferase. no signal peptide. no TMHS%3B~Conserved hypothetical protein	gene	gene1845	http://www.ncbi.nlm.nih.gov/gene/?term=azo1805
azo1806	azo1806	waaF1	waaF1	1983567	1984781	-	ADP-heptose--LPS heptosyltransferase II	ADP-heptose--LPS heptosyltransferase II (EC 2.-.-.-). pdxJ: pyridoxal phosphate biosynthetic%3B~High confidence in function and specificity	gene	gene1846	http://www.ncbi.nlm.nih.gov/gene/?term=azo1806
azo1807	azo1807		azo1807	1984769	1985425	-	heptose phosphatase	Hypothetical protein yaeD.%3B~High confidence in function and specificity	gene	gene1847	http://www.ncbi.nlm.nih.gov/gene/?term=azo1807
azo1808	azo1808		azo1808	1985416	1986156	-	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8YLL2 (35%25 identity)%3B TREMBL:Q9HWN3 (37%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene1848	http://www.ncbi.nlm.nih.gov/gene/?term=azo1808
azo1809	azo1809		azo1809	1986153	1987412	-	glycosyltransferase	Hypothetical protein Rv0486/MT0504/Mb0496. InterPro: Glycosyl transferases group 1%3B~Specificity unclear	gene	gene1849	http://www.ncbi.nlm.nih.gov/gene/?term=azo1809
azo1810	azo1810		azo1810	1987667	1988008	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH	gene	gene1850	http://www.ncbi.nlm.nih.gov/gene/?term=azo1810
azo1811	azo1811		azo1811	1987987	1988523	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to BPP2658 of B. parapertussis of 48%25 (trembl|Q7W772(SRS)). 3 TMHs. no signal protein. Has PF04239%3BProtein of unknown function (DUF421)%3BIPR007353 DUF421%3B~Conserved hypothetical protein	gene	gene1851	http://www.ncbi.nlm.nih.gov/gene/?term=azo1811
azo1812	azo1812		azo1812	1988694	1990121	+	probable transcriptional regulatory protein	Probable transcriptional regulatory protein%2C%3B~Specificity unclear	gene	gene1852	http://www.ncbi.nlm.nih.gov/gene/?term=azo1812
azo1813	azo1813		azo1813	1990267	1990617	+	Hypothetical protein	Hypothetical protein. Weak homology with hits.	gene	gene1853	http://www.ncbi.nlm.nih.gov/gene/?term=azo1813
azo1814	azo1814		azo1814	1990819	1991112	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebD123 of Azoarcus sp. EbN1 of 50%25 (gnl|keqq|eba:ebD123(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene1854	http://www.ncbi.nlm.nih.gov/gene/?term=azo1814
azo1815	azo1815		azo1815	1991120	1991503	+	hypothetical membrane protein	Hypothetical membrane protein. No homology of the entire protein with the data bank. No domains predicted. No signal peptide. 2 TMHs	gene	gene1855	http://www.ncbi.nlm.nih.gov/gene/?term=azo1815
azo1816	azo1816		azo1816	1991500	1991976	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted No signal peptide 2 TMHs	gene	gene1856	http://www.ncbi.nlm.nih.gov/gene/?term=azo1816
azo1817	azo1817		azo1817	1992008	1995052	+	conserved hypothetical two-component hybrid sensor and regulator	Conserved hypothetical two-component hybrid sensor and regulator. Homology to ebA6890 of Azoarcus sp. EbN1 of 56%25 (gnl|keqq|eba:ebA6890(KEGG)). InterPro: IPR003594 ATPbind_ATPase. IPR004358 Bact_sens_pr_C. IPR005467 His_kinase. IPR003661 His_kinA_N. IPR009082 His_kin_homodim. IPR001610 PAC. IPR000700 PAS-assoc_C. IPR000014 PAS_domain. IPR001789 Response_reg. Pfam: PF02518 HATPase_c. PF00512 HisKA. PF00785 PAC. PF00989 PAS. PF00072 Response_reg. SMART: SM00387 HATPase_c. SM00388 HisKA. SM00086 PAC. SM00091 PAS. SM00448 REC. TIGRFAM: TIGR00229 sensory_box%3B 3 TMHMM reporting 7 transmembrane helices.%3B~Conserved hypothetical protein	gene	gene1857	http://www.ncbi.nlm.nih.gov/gene/?term=azo1817
azo1818	azo1818		azo1818	1995107	1996027	+	exoribonuclease II	Putative ribonuclease RNASE BN (RBN)Protein%2C 31%25 identity (44%25 similarity) to TrEMBL%3B Q8XPH6. Has PF03631%3B Ribonuclease BN-like family%3BIPR004664%2C RNase_BN%3BThis family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme%2C suggesting that many members of this family may not have this catalytic activity.%3B~Family membership	gene	gene1858	http://www.ncbi.nlm.nih.gov/gene/?term=azo1818
azo1819	azo1819		azo1819	1996190	1997581	+	hypothetical protein	Hypothetical protein. Homology to dr0392 of D. radiodurans of 25%25 (trembl|Q9RXC3) Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins. no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1859	http://www.ncbi.nlm.nih.gov/gene/?term=azo1819
azo1820	azo1820		azo1820	1997651	1998100	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to BB2852 of B.bronchiseptica of 53%25 (tremble:Q7WIJ9). Has pfam05239%2C PRC%2C PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long%2C and found widely represented in bacteria%2C archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM%2C which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain. NO signal peptide reported to be present. No TMH reported to be present.	gene	gene1860	http://www.ncbi.nlm.nih.gov/gene/?term=azo1820
azo1821	azo1821		azo1821	1998158	2000881	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA6882 of Azoarcus sp. EbN1 of 74%25 (gnl|keqq|eba:ebA6882(KEGG)). Domian structure: 373 aa -599 aa AAA ATPase%3B 638 aa - 726 aa HATPase_c%3B 750 aa - 877 aa Rec InterPro: ABC transporter (IPR003439)%3B AAA ATPase superfamily (IPR003593)%3B ABC transporter transmembrane region (IPR001140)%3B ATP/GTP-binding site motif A ((P-loop) (IPR001687)%3B (Response regulator reciver (IPR001789)%3B Histidine kinase-%2C DNA gyrase B-%2C phytochrome-like ATPase (IPR003594) Pfam: ABC-transporter%2C ABC transmembrane region%3B Response regulator reciver domain. no signal peptide. probable 5 TMHs%3B~Conserved hypothetical protein	gene	gene1861	http://www.ncbi.nlm.nih.gov/gene/?term=azo1821
azo1822	azo1822		azo1822	2000904	2001464	+	conserved hypothetical protein	Conserved hypothetical protein. Signal peptide present.	gene	gene1862	http://www.ncbi.nlm.nih.gov/gene/?term=azo1822
azo1823	azo1823		azo1823	2001475	2002209	+	putative Mg(2+) transporter	Putative Mg(2+) transporter ATPase [attV]%2C 58%25 identity (77%25 similarity) to TrEMBL%3BQ8UKG4%2C Q9WWC7. TrEMBBL%3BQ7W456(66%25 identity). Has PF02308%3BMgtC family%3B(IPR003416%2C MgtCSapB_transpt):The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known. No Signal peptide or TMH reported present.%3B~Family membership	gene	gene1863	http://www.ncbi.nlm.nih.gov/gene/?term=azo1823
azo1824	azo1824	ygaD2	ygaD2	2002246	2002746	-	probable CinA domain protein	Protein ygaD. TREMBL:Q7W761: 58%25 identity%2C 68%25 similarity CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain. InterPro: Competence-damaged protein InterPro: IPR008136%3B CinA_C. Pfam: PF02464 cinA_cterm: competence/damage-inducible No Signal peptide (Signal P predicted) No transmembrane helices%3B~Function unclear	gene	gene1864	http://www.ncbi.nlm.nih.gov/gene/?term=azo1824
azo1825	azo1825		azo1825	2002713	2003273	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to smb20339 of S. meliloti of 30%25 (trembl|Q92WL4(SRS)). No domains predicted. signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene1865	http://www.ncbi.nlm.nih.gov/gene/?term=azo1825
azo1826	azo1826		azo1826	2003309	2004646	+	NADH dehydrogenase (ubiquinone)	39%25	gene	gene1866	http://www.ncbi.nlm.nih.gov/gene/?term=azo1826
azo1827	azo1827		azo1827	2004654	2005118	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CC2898 of Caulobacter crescentus of 56%25 (trembl|Q89WY3(SRS)). No domains predicted. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene1867	http://www.ncbi.nlm.nih.gov/gene/?term=azo1827
azo1828	azo1828		azo1828	2005129	2006316	-	hypothetical secreted protein	Hypothetical secreted protein. No significant homology over the entire protein length with the data bank. InterPro: Oxidoreductase FAD and NAD(P)-binding domain (IPR001433)%3B Ferredoxin (IPR001041)%3B NADH: cytochrome b5 reductase (IPR001834). Pfam: Oxidoreductase FAD-binding domain%3B Oxidoreductase NAD-binding domain%3B 2Fe-2S iron-sulfur cluster binding domain. signal peptide. no TMHs	gene	gene1868	http://www.ncbi.nlm.nih.gov/gene/?term=azo1828
azo1829	azo1829		azo1829	2006232	2007008	-	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide. 1 TMHs	gene	gene1869	http://www.ncbi.nlm.nih.gov/gene/?term=azo1829
azo1830	azo1830		azo1830	2007034	2009067	-	putative TonB-denpendent receptor	Similar to FepA%2C an iron regulated outer membrane protein. FepA is a receptor for the siderophore complex ferric enterobactin and for colcins B and D. INVOLVED IN THE INITIAL STEP OF IRON UPTAKE BY BINDING FERRIC ENTEROBACTIN THAT ALLOWS E. COLI TO EXTRACT IRON FROM THE ENVIRONMENT. ilvC: ketol-acid reductoisomerase%3B~Function unclear	gene	gene1870	http://www.ncbi.nlm.nih.gov/gene/?term=azo1830
azo1831	azo1831	mauG	mauG	2009546	2010928	+	putative cytochrome c551 peroxidase	Di-heme cytochrome c peroxidase MauG%2C required for the synthesis of the tryptophan tryptophylquinone (TTQ) prosthetic group of MADH in P.denitrificans . INVOLVED IN METHYLAMINE METABOLISM. ESSENTIAL FOR THE MATURATION OF THE BETA SUBUNIT OF MADH PRESUMABLY VIA A STEP IN THE BIOSYNTHESIS OF TRYPTOPHAN TRYPTOPHYLQUINONE (TTQ) THE COFACTOR OF MADH. urease_gam: urease gamma subunit%3B~High confidence in function and specificity	gene	gene1871	http://www.ncbi.nlm.nih.gov/gene/?term=azo1831
azo1832	azo1832		azo1832	2010939	2011565	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology ebA6930 of Azoarcus EbN1 of 31%25 (gnl|keqq|eba:ebA6930(KEGG)). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene1872	http://www.ncbi.nlm.nih.gov/gene/?term=azo1832
azo1833	azo1833	alkA	alkA	2011690	2012379	+	DNA-3-methyladenine glycosylase II	DNA-3-methyladenine glycosylase 1 (3-methyladenine DNA glycosidase 1) (3MEA DNA glycosylase 1). HYDROLYSIS OF THE DEOXYRIBOSE N-GLYCOSIDIC BOND TO EXCISE 3-METHYLADENINE OR 7-METHYLADENINE FROM THE DAMAGED DNA POLYMER FORMED BY ALKYLATION LESIONS. CAN RELEASE ETHYLATED AND PROPYLATED BASES FROM DNA IN ADDITION TO 3-METHYLADENINE. TIGR00274: glucokinase regulator-related.%3B~High confidence in function and specificity	gene	gene1873	http://www.ncbi.nlm.nih.gov/gene/?term=azo1833
azo1834	azo1834	ndh2	ndh2	2012480	2013760	-	probable NADH dehydrogenase	Probable NADH dehydrogenase. Homology to ndh of P. fluorescens of 45%25 (trembl|Q9KGX09 TRANSFER OF ELECTRONS FROM NADH TO THE RESPIRATORY CHAIN. THE IMMEDIATE ELECTRON ACCEPTOR FOR THE ENZYME IS BELIEVED TO BE UBIQUINONE. DOES NOT COUPLE THE REDOX REACTION TO PROTON TRANSLOCATION. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1874	http://www.ncbi.nlm.nih.gov/gene/?term=azo1834
azo1835	azo1835		azo1835	2013981	2014892	-	LysR-family transcriptional regulator	Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear	gene	gene1875	http://www.ncbi.nlm.nih.gov/gene/?term=azo1835
azo1836	azo1836		azo1836	2015262	2016950	+	hypothetical protein	Hypothetical protein sharing 76%25 similarity(61%25 identity) with Hypothetical protein [Thauera aromatica]TrEMBl O87938. Has pfam06980%2C DUF1302 domain%2CProtein of unknown function (DUF1302). This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas.(IPR010727) No Signal peptide or TMH being reported to be present.%3B~Function unclear	gene	gene1876	http://www.ncbi.nlm.nih.gov/gene/?term=azo1836
azo1837	azo1837		azo1837	2016980	2018332	+	conserved hypothetical secreted protein	Conserved hypothetical secreed protein. Homology to PA3081 of P.aeruginosa of 40%25 (tremble:Q9HZC7). Has DUF1329 domain(PF07044%2CIPRO10752). Protein of unknown function (DUF1329):This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. No TMHs. Signal present.%3B~Conserved hypothetical protein	gene	gene1877	http://www.ncbi.nlm.nih.gov/gene/?term=azo1837
azo1838	azo1838		azo1838	2018425	2019552	+	conserved hypothetical BNR domain protein	Conserved hypothetical BNR domain protein. Homology to pp3201 of P. putida of 46%25 (trembl|Q88I01). InterPro: BNR repeat (IPR002860). Pfam: BNR repeat. BNR repeats are short repeats never found closer than 40 residues together%2C which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. singal peptide. no TMHs%3B~Function unclear	gene	gene1878	http://www.ncbi.nlm.nih.gov/gene/?term=azo1838
azo1839	azo1839		azo1839	2019552	2021942	+	probable transporter	Putative membrane protein MJ1562. TREMBL:Q88I00: 66%25 identity%2C 51%25 similarity The sterol-sensing domain (SSD) consists of approximately 180 amino acids organized into a cluster of five consecutive membrane-spanning domains and is found in proteins which have key roles in different aspects of cholesterol homeostasis or cholesterol-linked signalling such as sterol-regulated movement or the trafficking of specific cargoes. InterPro:IPR000731%3B SSD_5TM Found in :IPR003392: Patched family IPR004816: Hydroxymethylglutaryl-CoA reductase (NADPH Pfam:Patched:Patched family TIGRFAM:2A060602:transmembrane receptor Patch 2A0604s01: protein-export membrane pro TMHMM predicted 12 transmembrane helices%3B~Family membership	gene	gene1879	http://www.ncbi.nlm.nih.gov/gene/?term=azo1839
azo1840	azo1840		azo1840	2021961	2022410	+	putative universal stress protein	Putative universal stress protein%2C%3B~Conserved hypothetical protein	gene	gene1880	http://www.ncbi.nlm.nih.gov/gene/?term=azo1840
azo1841	azo1841		azo1841	2022415	2023890	+	probable methyl-accepting chemotaxis transducer	Methyl-accepting chemotaxis protein%2C%3B~Specificity unclear	gene	gene1881	http://www.ncbi.nlm.nih.gov/gene/?term=azo1841
azo1842	azo1842	lapR	lapR	2024002	2025687	+	transcriptional regulatory protein	Transcriptional regulatory protein lapR. In Pseudomonas sp. strain KL28 the genes%2C designated as lap (for long-chain alkylphenols)%2C encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. The lap genes are located in a 13.2 kb region with 14 ORFs in the order lapRBKLMNOPCEHIFG and with the same transcriptional orientation. The lapR gene is transcribed independently and encodes a member of the XylR/DmpR positive transcriptional regulators. Similarity to SWISSPROT: sprot|XYLR_PSEPU (45%25 Pseudomonas putida%2C XylR) / TREMBL: trembl|Q7WYF6 (63%25 Pseudomonas strain KL28%2CLapR) InterPro: IPR002078 Sig54_interact. IPR004096 V4R. IPR003593 AAA_ATPase. IPR002197 HTH_Fis. Pfam: PF02954 HTH_8. PF00158 Sigma54_activat. PF02830 V4R. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene1882	http://www.ncbi.nlm.nih.gov/gene/?term=azo1842
azo1843	azo1843		azo1843	2026337	2026654	+	plant type ferredoxin like protein	plant type ferredoxin like protein cofactor: binds 1 2fe-2s cluster (by similarity). Pfam: fer2 2Fe-2S iron-sulfur cluster binding do%3B~Function unclear	gene	gene1883	http://www.ncbi.nlm.nih.gov/gene/?term=azo1843
azo1844	azo1844	lapB1	lapB1	2026691	2027626	+	catechol 2%2C3-dioxygenase	In Pseudomonas sp. strain KL28 the genes%2Cdesignated as lap (for long-chain alkylphenols)%2C encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. The lap genes are located in a 13.2 kb region with 14 ORFs in the order lapRBKLMNOPCEHIFG and with the same transcriptional orientation. Catechol 2%2C3-dioxygenase LapB%2C%3B~High confidence in function and specificity	gene	gene1884	http://www.ncbi.nlm.nih.gov/gene/?term=azo1844
azo1845	azo1845	lapK	lapK	2027628	2027888	+	phenol 2-monooxygenase	Phenol 2-monooxygenase p0 component%2C%3B~High confidence in function and specificity	gene	gene1885	http://www.ncbi.nlm.nih.gov/gene/?term=azo1845
azo1846	azo1846	lapL	lapL	2027934	2028926	+	phenol 2-monooxygenase p1 component	Phenol hydroxylase p1 protein. Catabolizes phenol and some of its methylated derivates. P1 is required for growth on phenol and for in vitro phenol hydroxylase activity. Similar to SWISSPROT: sprot|DMPL_PSESP (52%25 Pseudomonas sp. (strain CF600)%2C DmpL) / TREMBL: trembl|Q7WYF3 (67%25 Pseudomonas sp. KL28%2C LapL) InterPro: IPR003430 Phenol_Hydrox. Pfam: PF02332 Methane/Phenol/Toluene Hydroxylase. Part of the lap operon: In Pseudomonas sp. strain KL28 the genes%2Cdesignated as lap (for long-chain alkylphenols)%2C encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. The lap genes are located in a 13.2 kb region with 14 ORFs in the order lapRBKLMNOPCEHIFG and with the same transcriptional orientation.%3B~High confidence in function and specificity	gene	gene1886	http://www.ncbi.nlm.nih.gov/gene/?term=azo1846
azo1847	azo1847	lapM	lapM	2028935	2029204	+	phenol 2-monooxygenase p2 component	Phenol 2-monooxygenase p2 component%2C%3B~High confidence in function and specificity	gene	gene1887	http://www.ncbi.nlm.nih.gov/gene/?term=azo1847
azo1848	azo1848	lapN	lapN	2029221	2030738	+	phenol 2-monooxygenase p3 component	Phenol 2-monooxygenase p3 component%2C%3B~High confidence in function and specificity	gene	gene1888	http://www.ncbi.nlm.nih.gov/gene/?term=azo1848
azo1849	azo1849	lapO	lapO	2030817	2031173	+	phenol 2-monooxygenase p4 component	Phenol 2-monooxygenase p4 component%2C%3B~High confidence in function and specificity	gene	gene1889	http://www.ncbi.nlm.nih.gov/gene/?term=azo1849
azo1850	azo1850	lapP	lapP	2031229	2032290	+	Phenol 2-monooxygenase	Phenol hydroxylase P5 protein (EC 1.14.13.7) (Phenol 2-monooxygenase P5 component). Probable electron transfer from NADPH via FAD and the 2Fe-2S center to the oxygenase activity site of the enzyme.%3B~High confidence in function and specificity	gene	gene1890	http://www.ncbi.nlm.nih.gov/gene/?term=azo1850
azo1851	azo1851		azo1851	2032562	2033650	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of Vibrio vulnificus of 41%25 (gi|51242695|gb|AAT99285.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene1891	http://www.ncbi.nlm.nih.gov/gene/?term=azo1851
azo1852	azo1852	lapC	lapC	2034874	2036334	+	5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase	5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase%2C%3B~High confidence in function and specificity	gene	gene1892	http://www.ncbi.nlm.nih.gov/gene/?term=azo1852
azo1853	azo1853	lapE	lapE	2036713	2037510	+	2-oxopent-4-enoate hydratase	Conversion of 2-hydroxypent-2%2C4-dienoate into 4-hydroxy-2-oxopentanoate%2C involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. Belongs to the todj/xyli/xylj/hpcg family%2C TREMBL:Q93JW5 (62%25 identity)%3B SWISSPROT:P23107 (58%25 identity). Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity	gene	gene1893	http://www.ncbi.nlm.nih.gov/gene/?term=azo1853
azo1854	azo1854	lapH	lapH	2037507	2038310	+	4-oxalocrotonate decarboxylase	Conversion of 4-oxalocrotonate into 2-oxopent-4-enoate%2C involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. Belongs to the todJ/xylI/xylJ/hpcG family%2C TREMBL:Q8RQD3 (56%25 identity)%3B SWISSPROT:P23107. Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity	gene	gene1894	http://www.ncbi.nlm.nih.gov/gene/?term=azo1854
azo1855	azo1855	lapI	lapI	2038330	2038551	+	oxaloacetate tautomerase	4-oxalocrotonate isomerase%2C%3B~High confidence in function and specificity	gene	gene1895	http://www.ncbi.nlm.nih.gov/gene/?term=azo1855
azo1856	azo1856	lapF	lapF	2038548	2039462	+	acetaldehyde dehydrogenase	This family of bacterial enzymes catalyse the formation of acetyl- CoA from acetaldehyde in the 3-hydroxyphenylpropinoate degradation pathway%2C TREMBL:P97091 (72%25 identity)%3B TREMBL:O51855 (70%25 identity). InterPro (IPR003361): Acetaldehyde dehydrogenase Pfam (PF02396): Acetaldehyde dehydrogenase.%3B~High confidence in function and specificity	gene	gene1896	http://www.ncbi.nlm.nih.gov/gene/?term=azo1856
azo1857	azo1857	lapG	lapG	2039462	2040505	+	4-hydroxy 2-oxovalerate aldolase	4-hydroxy-2-oxovalerate aldolase%2C MhpE%2C probable involved in the degradation of phenol or phenylpropionate. Similar to sprot|MHPE_ECOLI (52%25) and to trembl|Q7WYE3 (84%25). Pfam (PF00682): HMG-CoA lyase-like family Hydroxymethylglutaryl-CoA lyase catalyses the conversion of (S)-3-hydroxy-3-methylglutaryl-CoA to acetyl-CoA and acetoacetate during the final step of ketogenesis and leucine catabolism. The HMGL-like signature is found in a diverse set of enzymes including various aldolases and a region of pyruvate carboxylase.%3B~Specificity unclear	gene	gene1897	http://www.ncbi.nlm.nih.gov/gene/?term=azo1857
azo1858	azo1858	xylE	xylE	2041184	2042116	+	probable Catechol 2%2C3-dioxygenase	Catechol 2%2C3-dioxygenase XylE catalyzes the ring cleavage of catechol and some substituted catechols. Similar to pir|JE0112 (52%25)%2C to trembl|Q45459 (48%25)and to sprot|XYE2_PSEPU (50%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ProDom (PD000977): Extradiol ring-cleavage dioxygenase%3B~Specificity unclear	gene	gene1898	http://www.ncbi.nlm.nih.gov/gene/?term=azo1858
azo1859	azo1859		azo1859	2042142	2042897	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q82N83 (22%25 identity)%3B TREMBL:Q9F8V0 (21%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene1899	http://www.ncbi.nlm.nih.gov/gene/?term=azo1859
azo1860	azo1860		azo1860	2042908	2043327	+	putative tautomerase	Putative tautomerase Weak Homology with others similar proteins. Has 2 copies of PF01361%2C Tautomerase enzyme%3BIPR004370%2C Taut%3BThis family includes the enzyme 4-oxalocrotonate tautomerase Q01468 that catalyses the ketonisation of 2-hydroxymuconate to 2-oxo-3-hexenedioate.	gene	gene1900	http://www.ncbi.nlm.nih.gov/gene/?term=azo1860
azo1861	azo1861		azo1861	2043439	2044947	-	hypothetical protein	Hypothetical protein. No homology of the entire protein to the data base. Has (IPR002790)PF01936%3BProtein of unknown function DUF88%3B This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates%2C suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs). No Signal peptide or TMH present.	gene	gene1901	http://www.ncbi.nlm.nih.gov/gene/?term=azo1861
azo1862	azo1862	rluA2	rluA2	2045147	2045857	+	pseudouridine synthase A	Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs.%3B~Family membership	gene	gene1902	http://www.ncbi.nlm.nih.gov/gene/?term=azo1862
azo1863	azo1863		azo1863	2046178	2047254	+	site-specific recombinase%2C phage integrase family	Integrase. INTEGRASE IS NECESSARY FOR INTEGRATION OF THE PHAGE INTO THE HOST GENOME BY SITE-SPECIFIC RECOMBINATION. IN CONJUNCTION WITH EXCISIONASE INTEGRASE IS ALSO NECESSARY FOR EXCISION OF THE PROPHAGE FROM THE HOST GENOME.%3B~Specificity unclear	gene	gene1904	http://www.ncbi.nlm.nih.gov/gene/?term=azo1863
azo1864	azo1864		azo1864	2047997	2048656	+	Hypothetical protein	Hypothetical protein %2C 27%25 identity to TrEMBL%3BQ84EQ6. No domains%2C repeats%2C motifs or features present.	gene	gene1905	http://www.ncbi.nlm.nih.gov/gene/?term=azo1864
azo1865	azo1865		azo1865	2048746	2049024	+	Hypothetical protein	Hypothetical protein. No matches in the database. No domains%2C repeats%2C motifs or features present.	gene	gene1906	http://www.ncbi.nlm.nih.gov/gene/?term=azo1865
azo1866	azo1866		azo1866	2049041	2049337	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene1907	http://www.ncbi.nlm.nih.gov/gene/?term=azo1866
azo1867	azo1867		azo1867	2049341	2049763	+	Hypothetical protein	Hypothetical protein. Very weak homology with hits in the database. No domains%2C repeats%2C motifs or features present.	gene	gene1908	http://www.ncbi.nlm.nih.gov/gene/?term=azo1867
azo1868	azo1868		azo1868	2050193	2050453	+	Hypothetical protein	Hypothetical protein%2C very weak homology with hits in the Database. No Motifs%2Cdomains%2C or Signal peptide present.	gene	gene1909	http://www.ncbi.nlm.nih.gov/gene/?term=azo1868
azo1869	azo1869		azo1869	2050453	2050995	+	Hypothetical protein	Putative Hypothetical protein. Very weak homology with hits in the Database. No signficant domains%2C motifs or Signal Peptide present.	gene	gene1910	http://www.ncbi.nlm.nih.gov/gene/?term=azo1869
azo1870	azo1870		azo1870	2050956	2052833	+	Endopeptidase Clp	Putative protease encoded ATP-dependent Clp protease family protein similar(30 Identity%2C45%25 similarity in function) to TrEMBL:Q8X866. IPR001907. Has pfam00574%2CCLP_protease%2C Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease%2C ser-111%2Chis-136 and asp-185 form the catalytic triad. One member has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Peptidase family S49 domain present. Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). PF00574%3BCLP_protease PR00127%3BCLPPROTEASEP PS00381%3BCLP_PROTEASE_SER PS00382%3BCLP_PROTEASE_HIS TIGR00493%3BclpP No Signal peptide or TMH being reported as present.%3B~High confidence in function and specificity	gene	gene1911	http://www.ncbi.nlm.nih.gov/gene/?term=azo1870
azo1871	azo1871		azo1871	2052959	2053276	+	hypothetical protein		gene	gene1912	http://www.ncbi.nlm.nih.gov/gene/?term=azo1871
azo1872	azo1872		azo1872	2053263	2055575	+	hypothetical phage tail tape measure protein	Hypothetical phage tail tape measure protein. Controls phage tail length no signal peptide. no TMH	gene	gene1913	http://www.ncbi.nlm.nih.gov/gene/?term=azo1872
azo1873	azo1873		azo1873	2055575	2056312	+	Hypothetical protein	Hypothetical protein%2C 26%25 Identity to TrEMBL%3BQ9PFZ1. No domains%2C repeats%2C motifs or features could be predicted above threshold.	gene	gene1914	http://www.ncbi.nlm.nih.gov/gene/?term=azo1873
azo1874	azo1874	rmlC	rmlC	2056922	2057467	-	dTDP-4-dehydrorhamnose 3%2C5-epimerase	dTDP-4-dehydrorhamnose 35-epimerase (EC 5.1.3.13) (dTDP-4-keto-6- deoxyglucose 35-epimerase) (dTDP-L-rhamnose synthetase). InterPro: dTDP-4-dehydrorhamnose 35-epimerase%3B~High confidence in function and specificity	gene	gene1915	http://www.ncbi.nlm.nih.gov/gene/?term=azo1874
azo1875	azo1875	rmlA	rmlA	2057467	2058351	-	glucose-1-phosphate thymidylyltransferase	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase).%3B~High confidence in function and specificity	gene	gene1916	http://www.ncbi.nlm.nih.gov/gene/?term=azo1875
azo1876	azo1876		azo1876	2058363	2059253	-	dTDP-4-dehydrorhamnose reductase	Region start changed from 2059335 to 2059254 (-81 bases)	gene	gene1917	http://www.ncbi.nlm.nih.gov/gene/?term=azo1876
azo1877	azo1877	rmlB	rmlB	2059250	2060326	-	dTDP-glucose 4%2C6-dehydratase	dTDP-glucose 46-dehydratase (EC 4.2.1.46). InterPro: NAD dependent epimerase/dehydratase family%3B~High confidence in function and specificity	gene	gene1918	http://www.ncbi.nlm.nih.gov/gene/?term=azo1877
azo1878	azo1878		azo1878	2060555	2061478	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to pp4172 of P. putida of 33%25 (trembl|Q88FC6). Pfam: DUF534 This is a family of putative secreted proteins of unknown function. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene1919	http://www.ncbi.nlm.nih.gov/gene/?term=azo1878
azo1879	azo1879		azo1879	2061475	2063547	+	conserved hypothetical signaling protein	Conserved hypothetical signaling protein. Homology to Daro03001110 of Dechloromonas aromatica of 33%25 (gi|46141071|ref|ZP_00203851.1|(NBCI ENTREZ)). InterPro: IPR003660 HAMP. IPR000160 GGDEF. Pfam: PF00563 EAL domain. PF00672 HAMP. PF00990 GGDEF domain. TIGRFAM:TIGR00254 putative diguanylate cyclase (GGDEF) domain. Signal P reporting signal peptide. TMHMM reporting 3 transmembrane helices.%3B~Conserved hypothetical protein	gene	gene1920	http://www.ncbi.nlm.nih.gov/gene/?term=azo1879
azo1880	azo1880		azo1880	2063554	2064687	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. TREMBL:O86370 (36%25 identity)%3B TREMBL:Q7U0W8 (36%25 identity). No domains predicted. SignalP reporting signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene1921	http://www.ncbi.nlm.nih.gov/gene/?term=azo1880
azo1881	azo1881		azo1881	2064687	2067200	-	ABC transporter permease protein	Similar to TREMBL:Q82US4 (29%25 identity). Pfam (DUF214): Predicted permease. TMHMM predicting 10 transmembrane helices.%3B~Specificity unclear	gene	gene1922	http://www.ncbi.nlm.nih.gov/gene/?term=azo1881
azo1882	azo1882		azo1882	2067197	2067874	-	ABC transporter%2C ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q89X55 (42%25 identity)%3B SWISSPROT:P31219 (40%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter.%3B~Family membership	gene	gene1923	http://www.ncbi.nlm.nih.gov/gene/?term=azo1882
azo1883	azo1883	crtB1	crtB1	2067967	2068812	+	putative phytoene synthase	Putative phytoene synthase. Homology to crtB of Synechococcus sp. of 30%25 (SWISSPROT:CRTB_SYNP7 Is involved in the synthesis of carotenoids. Catalyzes the reaction from prephytoene diphosphate to phytoene. Pfam: Squalene/phytoene synthase no singal peptide no TMHs%3B~Family membership	gene	gene1924	http://www.ncbi.nlm.nih.gov/gene/?term=azo1883
azo1884	azo1884	crtB2	crtB2	2068913	2069746	+	putative phytoene synthase	Putative phytoene synthase. Homology to crtB of Synechococcus sp. of 35%25 (SWISSPROT:CRTB_SYNP7 Is involved in the synthesis of carotenoids. Catalyzes the reaction from prephytoene diphosphate to phytoene. Pfam: Squalene/phytoene synthase no singal peptide no TMHs%3B~Family membership	gene	gene1925	http://www.ncbi.nlm.nih.gov/gene/?term=azo1884
azo1885	azo1885		azo1885	2069751	2071058	+	putative oxidoreductase precursor	Putative oxidoreductase precursor%2C 27%25 identity (38%25 similarity) to TrEMBL%3BQ6N3F3. TrEMBL%3BQ9RI54. Has PF00070%3BPyridine nucleotide-disulphide oxidoreductase%3B IPR001327 FAD_pyr_redox:This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Has PF01593%2CFlavin containing amine oxidoreductase%3B(IPR002937%2CAmino_oxidase):This family consists of various amine oxidases%2C including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation%3B these include various neurotransmitters%2Cneurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants%2C bacteria and protozoa oxidase spermidine and spermine to an aminobutyral%2C diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Has PF01494%2C FAD binding domain%3B(IPR002938 Moxy_FAD_binding)%3BThis domain is involved in FAD binding in a number of enzymes.%3B~Family membership	gene	gene1926	http://www.ncbi.nlm.nih.gov/gene/?term=azo1885
azo1886	azo1886		azo1886	2071071	2072195	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc2008 of R. solanacearum of 59%25 (trembl|Q8XXV5). no domain predicted. no signal peptide. no TMHs	gene	gene1927	http://www.ncbi.nlm.nih.gov/gene/?term=azo1886
azo1887	azo1887		azo1887	2072225	2073010	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS03577 of R.solanacearum of 66%25 (tremble:Q8XXV4). Has PF03883%2CProtein of unknown function (DUF328)%3B IPR005583 %3BMembers of this family are functionally uncharacterised. They are about 250 amino acids in length. No signal peptide. No TMHs	gene	gene1928	http://www.ncbi.nlm.nih.gov/gene/?term=azo1887
azo1888	azo1888	bioA	bioA	2073125	2074477	+	Adenosylmethionine--8-amino-7-oxononanoate transaminase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (7%2C8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase). TGIRFAM: bioA: adenosylmethionine--8-amino-7-oxononanoate transaminase%3B~High confidence in function and specificity	gene	gene1929	http://www.ncbi.nlm.nih.gov/gene/?term=azo1888
azo1889	azo1889	bioF	bioF	2074477	2075649	+	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase (EC 2.3.1.47) (AONS) (8-amino-7- ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase). InterPro: Aminotransferases class-I bioF: 8-amino-7-oxononanoate synthase%3B~High confidence in function and specificity	gene	gene1930	http://www.ncbi.nlm.nih.gov/gene/?term=azo1889
azo1890	azo1890	bioH	bioH	2075642	2076406	+	BioH protein	BioH protein.Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). Seems to be implicated in the early steps of biotin biosynthesis.%3B~Function unclear	gene	gene1931	http://www.ncbi.nlm.nih.gov/gene/?term=azo1890
azo1891	azo1891	bioC1	bioC1	2076399	2077193	+	biotin synthesis protein	Biotin synthesis protein bioC. bioc is involved in an early%2C but chemically unexplored%2C step in the conversion of pimelic acid to biotin.%3B~Specificity unclear	gene	gene1932	http://www.ncbi.nlm.nih.gov/gene/?term=azo1891
azo1892	azo1892	bioD	bioD	2077190	2077876	+	dethiobiotin synthase	Dethiobiotin synthetase (EC 6.3.3.3) (DTB synthetase) (DTBS). InterPro: Cobyrinic acid ac-diamide synthase bioD: dethiobiotin synthase%3B~High confidence in function and specificity	gene	gene1933	http://www.ncbi.nlm.nih.gov/gene/?term=azo1892
azo1893	azo1893		azo1893	2077881	2078672	-	RNA methyltransferase	Region start changed from 2079087 to 2078673 (-414 bases)	gene	gene1934	http://www.ncbi.nlm.nih.gov/gene/?term=azo1893
azo1894	azo1894		azo1894	2078681	2079136	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA1044 of P. aeruginosa of 44%25 (trembl|Q9I4T0). No domains predicted. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene1935	http://www.ncbi.nlm.nih.gov/gene/?term=azo1894
azo1895	azo1895	rnhB	rnhB	2079133	2079747	-	Ribonuclease H	Ribonuclease HII (RNase HII). This enzyme is an endonuclease that degrades the RNA of RNA-DNA hybrids specifically (By similarity). TIGR00729: ribonuclease HII.%3B~High confidence in function and specificity	gene	gene1936	http://www.ncbi.nlm.nih.gov/gene/?term=azo1895
azo1896	azo1896	lpxB	lpxB	2079720	2080895	-	probable lipid-A-disaccharide synthase	Probable lipid-A-disaccharide synthase. Homology to lpxB of E. coli of 45%25 (sprot|LPXB_ECOLI). Condensation of UDP-23-diacylglucosamine and 23-diacylglucosamine-1-phosphate to form lipid A disaccharide a precursor of lipid A a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (By similarity). InterPro: Lipid-A-disaccharide synthetase Tigrfam: lpxB: lipid A disaccharide synthase Pfam: Lipid-A-disaccharide synthetase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1937	http://www.ncbi.nlm.nih.gov/gene/?term=azo1896
azo1897	azo1897	lpxA	lpxA	2080900	2081670	-	probable acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase	Probable acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase. Homology to lpxA of E. coli of 56%25 (sprot|LPXA_ECOLI) Involved in the biosynthesis of lipid A a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. InterPro: Bacterial transferase hexapeptide repeat (IPR001451) Pfam: Bacterial transferase hexapeptide repeat no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1938	http://www.ncbi.nlm.nih.gov/gene/?term=azo1897
azo1898	azo1898	fabZ	fabZ	2081667	2082104	-	probable (3R)-hydroxymyristol acyl carrier protein dehydratase	Function:- Involved in saturated fatty acids biosynthesis. Entry name :- FABZ_ECOLI Primary accession number :-P21774 Identities %3D 81/140 (57%25) InterPro IPR006683%3B Thioestr_supf. Pfam PF03061%3B 4HBT%3B 1. Number of predicted TMHs: 0%3B~Family membership	gene	gene1939	http://www.ncbi.nlm.nih.gov/gene/?term=azo1898
azo1899	azo1899	lpxD	lpxD	2082110	2083135	-	probable UDP-3-O-[3-hydroxymyristol] glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. Homology to lpxD of E. coli of 46%25 (sprot|LPXD_ECOLI) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] %3D UDP-2%2C3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] InterPro: Bacterial transferase hexapeptide repeat (IPR001451) Pfam: Bacterial transferase hexapeptide repeat no signal peptide no TMHs BCCP: acetyl-CoA carboxylase biotin c%3B~High confidence in function and specificity	gene	gene1940	http://www.ncbi.nlm.nih.gov/gene/?term=azo1899
azo1900	azo1900	ompH	ompH	2083149	2083649	-	probable outer membrane protein	Probable outer membrane protein. Homology to ompH of Y. enterocolitica of 30%25 (sprot|OMPH_YEREN). Pfam: outer membrane protein (OmpH-like) signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1941	http://www.ncbi.nlm.nih.gov/gene/?term=azo1900
azo1901	azo1901	oma	oma	2083683	2085962	-	outer membrane protein	InterPro: Bacterial surface antigen (D15)%3B~Function unclear	gene	gene1942	http://www.ncbi.nlm.nih.gov/gene/?term=azo1901
azo1902	azo1902		azo1902	2086001	2087365	-	conserved hypothetical membrane-associated zinc metalloprotease	Conserved hypothetical membrane-associated zinc metalloprotease. Homology to ne1711 of N. europaea of 51%25 (trembl|Q82U02). Tigrfam: TIGR00054: membrane-associated zinc metalloprotease. Pfam: PDZ domain (Also known as DHR or GLGF). no signal peptide. 4 TMHs%3B~Family membership	gene	gene1943	http://www.ncbi.nlm.nih.gov/gene/?term=azo1902
azo1903	azo1903	dxr	dxr	2087365	2088564	-	probable 1-deoxy-D-xylulose 5-phosphate reductoisomerase	Function:-Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) (By similarity). Entry name :- DXR_PSEAE Primary accession number :- Q9KGU6 Identity:- 65%25 InterPro:-IPR003821%3B DXP_redisomrase. Pfam :- PF02670%3B DXP_reductoisom%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.014 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene1944	http://www.ncbi.nlm.nih.gov/gene/?term=azo1903
azo1904	azo1904	cdsA	cdsA	2088581	2089405	-	putative phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase :- catalytic activity ctp + phosphatidate %3D diphosphate + cdp-diacylglycerol. pathway :-phospholipid biosynthesis. Entry name:- CDSA_ECOLI Primary accession number :- P06466 InterPro:- IPR000374%3B PC_trans. Identities %3D 89/252 (35%25) Pfam PF01148%3B CTP_transf_1%3B 1. Number of predicted TMHs: 7 Prediction: Signal peptide Signal peptide probability: 1.0%3B~Family membership	gene	gene1945	http://www.ncbi.nlm.nih.gov/gene/?term=azo1904
azo1905	azo1905	uppS	uppS	2089398	2090198	-	probable undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase :- Generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP). UPP is the precursor of the carrier lipid for peptidoglycan synthesis (By similarity). Identities %3D 124/228 (54%25) Entry name SWISSPROT:UPPS_ECOLI Prim. accession # P60472 InterPro :- IPR001441%3B UPP_synth. Pfam:- PF01255%3B UPP_synthetase%3B 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.0%3B~Family membership	gene	gene1946	http://www.ncbi.nlm.nih.gov/gene/?term=azo1905
azo1906	azo1906	frr	frr	2090246	2090803	-	Frr protein	Ribosome recycling factor (Ribosome releasing factor) (RRF). Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another%3B~High confidence in function and specificity	gene	gene1947	http://www.ncbi.nlm.nih.gov/gene/?term=azo1906
azo1907	azo1907	pyrH	pyrH	2090814	2091530	-	uridylate kinase	Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase) InterPro: Aspartokinase superfamily%3B~High confidence in function and specificity	gene	gene1948	http://www.ncbi.nlm.nih.gov/gene/?term=azo1907
azo1908	azo1908	tsf	tsf	2091541	2092434	-	elongation factor EF-Ts	Elongation factor Ts (EF-Ts). Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.%3B~High confidence in function and specificity	gene	gene1949	http://www.ncbi.nlm.nih.gov/gene/?term=azo1908
azo1909	azo1909		azo1909	2092546	2093301	-	30S ribosomal protein S2	30S ribosomal protein S2. InterPro: Ribosomal protein S2%3B~High confidence in function and specificity	gene	gene1950	http://www.ncbi.nlm.nih.gov/gene/?term=azo1909
azo1910	azo1910	map	map	2093581	2094399	+	methionyl aminopeptidase	Methionine aminopeptidase (EC 3.4.11.18) (Peptidase M). Removes the amino-terminal methionine from nascent proteins. met_pdase_I: methionine aminopeptidase%3B~High confidence in function and specificity	gene	gene1951	http://www.ncbi.nlm.nih.gov/gene/?term=azo1910
azo1911	azo1911	glnD	glnD	2094419	2097004	+	putative protein-PII uridylyltransferase	Putative protein-PII uridylyltransferase. Homology to glnD of E. coli of 37%25 (sprot|GLND_ECOLI) Modifies by uridylylation or deuridylylation the PII (glnB) regulatory protein (By similarity). InterPro: Metal dependent phosphohydrolase HD domain (IPR003607)%3B HD domain (IPR006674)%3B ACT domain (IPR002912) Pfam: ACT domain%3B HD domain no signal peptide no TMHs recN: DNA repair protein RecN%3B~Family membership	gene	gene1952	http://www.ncbi.nlm.nih.gov/gene/?term=azo1911
azo1912	azo1912		azo1912	2097065	2097700	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RPA0231 of Rhodopseudomonas palustris of 39%25 (trembl|Q6ND78). Has PF03350%2C(IPR005134) Uncharacterized protein family%2C UPF0114: This conserved hypothetical protein family with four predicted transmembrane regions is found in E. coli%2C Haemophilus influenzae%2C and Helicobacter pylori%2C among completed genomes. No signal peptide. 3 TMHs	gene	gene1953	http://www.ncbi.nlm.nih.gov/gene/?term=azo1912
azo1913	azo1913		azo1913	2097850	2099463	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to pp1134 of P. putida of 77%25 (trembl|Q88NS1). Pfam: Phytoene dehydrogenase related enzyme. no signal peptide. no TMHs	gene	gene1954	http://www.ncbi.nlm.nih.gov/gene/?term=azo1913
azo1914	azo1914	dctD2	dctD2	2099467	2100810	-	transcriptional regulatory protein	C4-dicarboxylate transport transcriptional regulatory protein%2C%3B~High confidence in function and specificity	gene	gene1955	http://www.ncbi.nlm.nih.gov/gene/?term=azo1914
azo1915	azo1915	dctB2	dctB2	2100821	2102704	-	sensor histidine kinase	C4-dicarboxylate transport sensor protein%2C%3B~High confidence in function and specificity	gene	gene1956	http://www.ncbi.nlm.nih.gov/gene/?term=azo1915
azo1916	azo1916		azo1916	2102656	2103072	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to blr1303 of B. japonicum of 38%25 (trembl|Q89UV6(SRS)) No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene1957	http://www.ncbi.nlm.nih.gov/gene/?term=azo1916
azo1917	azo1917		azo1917	2103072	2105108	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to so0455 of S. oneidensis of 65%25 (trembl|Q8EJK8). Tigrfam: dctM: TRAP dicarboxylate transporter-DctM subunit. Pfam: TRAP C4-dicarboxylate transport (Dct) system permease DctM subunit. This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. no signal peptide. 17 TMHs%3B~Conserved hypothetical protein	gene	gene1958	http://www.ncbi.nlm.nih.gov/gene/?term=azo1917
azo1918	azo1918		azo1918	2105234	2106184	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to pp3954 pf P. putida of 64%25 (trembl|Q88FX3). no domains predicted. singal peptide. TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene1959	http://www.ncbi.nlm.nih.gov/gene/?term=azo1918
azo1919	azo1919		azo1919	2106499	2107608	+	probable oxidoreductase	Hypothetical protein MG039 homolog (D09_orf384). D-amino acid oxidase (EC: 1.4.3.3) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterized and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. InterPro: D-amino acid oxidase Putative conserved exported protein. TREMBL:Q7WG75: 55%25 identity%2C65%25 similarity. TREMBLnew:CAE29609. Pfam:NAD binding FAD dependent oxidoreductase. TIGRFAM:UDP-GALP mutase. Signal P predicted signal peptide and TMHMM predicted transmembrane helices. gidA: glucose-inhibited division prot%3B~Specificity unclear	gene	gene1960	http://www.ncbi.nlm.nih.gov/gene/?term=azo1919
azo1920	azo1920	gabD2	gabD2	2107621	2109078	-	probable succinate-semialdehyde dehydrogenase [NAD(P)+]	Probable succinate-semialdehyde dehydrogenase [NAD(P)+]. Homology to gabD of P. aeruginosa of 62%25 (trembl|Q9RBF6) Catalysis of the reaction: succinate semialdehyde + NAD(P)+ + H2O %3D succinate + NAD(P)H + H+. Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1961	http://www.ncbi.nlm.nih.gov/gene/?term=azo1920
azo1921	azo1921	etfA2	etfA2	2109292	2110215	-	probable electron transfer flavoprotein%2C alpha-subunit	Probable electron transfer flavoprotein%2C alpha subunit. Homology to etfA of B. japonicum of 66%25 (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene1962	http://www.ncbi.nlm.nih.gov/gene/?term=azo1921
azo1922	azo1922	etfB2	etfB2	2110306	2111055	-	electron transfer flavoprotein%2C beta-subunit	Electron transfer flavoprotein%2C beta subunit. Homology to etfB of B. japonicum of 71%25 (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS%3B~High confidence in function and specificity	gene	gene1963	http://www.ncbi.nlm.nih.gov/gene/?term=azo1922
azo1923	azo1923		azo1923	2111082	2112305	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to pa0446 of P. aeruginosa of 72%25 (trembl|Q9I672). Pfam: CAIB/BAIF family. no signal peptide. no TMHs	gene	gene1964	http://www.ncbi.nlm.nih.gov/gene/?term=azo1923
azo1924	azo1924	gcdH1	gcdH1	2112858	2114045	-	probable glutaryl-CoA dehydrogenase	CATALYZES THE OXIDATIVE DECARBOXYLATION OF GLUTARYL-COA TO CROTONYL-COA AND CO(2) IN THE DEGRADATIVE PATHWAY OF L-LYSINE L-HYDROXYLYSINE AND L-TRYPTOPHAN METABOLISM. IT USES ELECTRON TRANSFER FLAVOPROTEIN AS ITS ELECTRON ACCEPTOR. Entry name TREMBL:Q98HG5 Prim. accession # Q98HG5 Identities %3D 253/397 (63%25) InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Family membership	gene	gene1965	http://www.ncbi.nlm.nih.gov/gene/?term=azo1924
azo1925	azo1925		azo1925	2114231	2115175	+	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear	gene	gene1966	http://www.ncbi.nlm.nih.gov/gene/?term=azo1925
azo1926	azo1926		azo1926	2115279	2116043	+	hypothetical protein	Hypothetical protein. no homology over the entire protein. no domain structure no signal peptide no TMHs	gene	gene1967	http://www.ncbi.nlm.nih.gov/gene/?term=azo1926
azo1927	azo1927		azo1927	2116100	2116894	-	probable enoyl-CoA hydratase	Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA %3D trans-2(or3)-enoyl-CoA + H2O. Entry name TREMBL:Q7VU52 Prim. accession # Q7VU52 Identities %3D 124/266 (46%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene1968	http://www.ncbi.nlm.nih.gov/gene/?term=azo1927
azo1928	azo1928	abmE	abmE	2116903	2117298	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to orf5 of Azoarcus evansii of 78%25 (tremble:Q93FB4). Pfam: Endoribonuclease L-PSP. Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA. Previously thought to inhibit protein synthesis initiation. This protein may also be involved in the regulation of purine biosynthesis. No signal peptide. No TMHs	gene	gene1969	http://www.ncbi.nlm.nih.gov/gene/?term=azo1928
azo1929	azo1929		azo1929	2117291	2117746	-	probable 4-hydroxybenzoyl CoA thioesterase	TREMBL:Q89PR6: 50%25 identity%3B 71%25 similarity Probable 4-hydroxybenzoyl-CoA thioesterase . InterPro:IPR008272%3B 4HBcoA_thiost_AS Pfam:4HBT:4-hydroxybenzoyl-CoA thioesterase TIGR00051: conserved hypothetical protein No transmembrane helices%3B~Function unclear	gene	gene1970	http://www.ncbi.nlm.nih.gov/gene/?term=azo1929
azo1930	azo1930	gcdH2	gcdH2	2117761	2118942	-	probable glutaryl-CoA dehydrogenase	Glutaryl-CoA dehydrogenase mitochondrial precursor CATALYZES THE OXIDATIVE DECARBOXYLATION OF GLUTARYL-COA TO CROTONYL-COA AND CO(2) IN THE DEGRADATIVE PATHWAY OF L-LYSINE L-HYDROXYLYSINE AND L-TRYPTOPHAN METABOLISM. IT USES ELECTRON TRANSFER FLAVOPROTEIN AS ITS ELECTRON ACCEPTOR. Entry name TREMBL:Q88RH2 Prim. accession # Q88RH2 InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1. Number of predicted TMHs: 0%3B~Family membership	gene	gene1971	http://www.ncbi.nlm.nih.gov/gene/?term=azo1930
azo1931	azo1931	abmD	abmD	2118989	2120140	-	putative acyl-CoA dehydrogenase	Catalysis of the reaction:- acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor. Entry name TREMBL:Q98BT9 Prim. accession # Q98BT9 InterPro IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. Number of predicted TMHs: 0%3B~Family membership	gene	gene1972	http://www.ncbi.nlm.nih.gov/gene/?term=azo1931
azo1932	azo1932	abmC	abmC	2120148	2120993	-	probable enoyl-CoA hydratase	Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O. Entry name TREMBL:Q93FB6 Identities %3D 224/280 (80%25) Prim. accession # Q93FB6 InterPro IPR001753%3B EnCoA_hydrtse. Pfam PF00378%3B ECH%3B 1. Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene1973	http://www.ncbi.nlm.nih.gov/gene/?term=azo1932
azo1933	azo1933	abmB	abmB	2121433	2122242	-	probable beta-hydroxyacyl-CoA dehydrogenase	Probable beta-hydroxyacyl-CoA dehydrogenase. Homology to abmB of A. evansii of 79%25. InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases. InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase. No signal peptide. No TMHs.%3B~Specificity unclear	gene	gene1974	http://www.ncbi.nlm.nih.gov/gene/?term=azo1933
azo1934	azo1934	abmA	abmA	2122523	2124838	-	2-amninobenzoyl-CoA monooxygenase	2-amninobenzoyl-CoA monooxygenase/reductase (EC 1.14.13.40) Homology to abmA of A. evansii of 86%25 (trembl|Q93FB8(SRS). natural fusion protein of a monooxygenase and a reductase%3B contains flavin. Pfam: Monooxygnease%3B NADH:flavin oxidoreductase/NADH oxidorecutase. no signal peptide. no TMHs%3B~High confidence in function and specificity	gene	gene1975	http://www.ncbi.nlm.nih.gov/gene/?term=azo1934
azo1935	azo1935		azo1935	2124973	2125479	-	putative MarR-family transcriptional regulator	Putative MarR-family transcriptional regulator%2C%3B~Family membership	gene	gene1976	http://www.ncbi.nlm.nih.gov/gene/?term=azo1935
azo1936	azo1936		azo1936	2125695	2126702	+	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene1977	http://www.ncbi.nlm.nih.gov/gene/?term=azo1936
azo1937	azo1937		azo1937	2126825	2127613	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q9AQN5 (39%25 identity)%3B TREMBL:Q987X7 (35%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene1978	http://www.ncbi.nlm.nih.gov/gene/?term=azo1937
azo1938	azo1938	styA	styA	2127668	2128966	+	putative styrene monooxygenase	Putative styrene monooxygenase. Homology to styA of P. fluorescens of 25%25 (TREMBL:O06834) Encode a styrene monooxygenase responsible for the transformation of styrene to epoxystyrene Pfam: FAD binding domain no signal peptide no TMHs%3B~Family membership	gene	gene1979	http://www.ncbi.nlm.nih.gov/gene/?term=azo1938
azo1939	azo1939	nmoB	nmoB	2129059	2129544	+	probable monooxygenase component B	Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) (NTA monooxygenase component B) (NTA-MO B). HYDROXYLATION OF NITRILOTRIACETATE. TREMBL:Q93NA5:48%25 identity%2C 62%25 similarity InterPro: IPR002563%3B Flavin_Reduct. IPR009002%3B FMN_binding. Pfam:PF01613%3B Flavin_Reduct Non-secretory protein with low signal peptide probability (0.002) Absence of transmembrane helices%3B~High confidence in function and specificity	gene	gene1980	http://www.ncbi.nlm.nih.gov/gene/?term=azo1939
azo1940	azo1940		azo1940	2129896	2130807	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PP4294 of P. putida of 67%25 (trembl|Q88F06). Has PF05661%2C Protein of unknown function (DUF808)%3BIPR008526%3BThis family consists of several bacterial proteins of unknown function. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene1981	http://www.ncbi.nlm.nih.gov/gene/?term=azo1940
azo1941	azo1941	gdhAlpha2	gdhAlpha2	2130993	2132576	-	putative glucose dehydrogenase alpha subunit	Putative glucose dehydrogenase alpha subunit. Homology to gdhAlpha of B. cepacia of 28%25 (trembl|Q8GQE7). InterPro: NAD binding site (IPR000205)%3B UBA/THIF-type NAD/FAD binding fold (IPR000594)%2C $Fe-4s ferredoxin%2C ion-sulfur binding domain (IPR001450) Pfam: GMC oxidoreductase no signal peptide no TMHs gid: gid protein%3B~Function unclear	gene	gene1982	http://www.ncbi.nlm.nih.gov/gene/?term=azo1941
azo1942	azo1942		azo1942	2132573	2133175	-	hypothetical secreted protein	Hypothetical secreted protein. No good homology with hits in the database. No domains predicted. Signal peptide present. No TMHs	gene	gene1983	http://www.ncbi.nlm.nih.gov/gene/?term=azo1942
azo1943	azo1943	hpaC	hpaC	2133386	2133904	-	probable HPA reductase	Putative flavin:NADH reductase ycdH (EC 1.6.8.-). Catalyzes the reduction of free flavins (FMN FAD and riboflavin) by NADH (By similarity). TREMBL:Q8RLG2: 41%25 identity%2C 60%25 similarity InterPro: Flavin reductase-like domain InterPro: IPR002563%3B Flavin_Reduct. IPR009002%3B FMN_binding. Pfam PF01613%3B Flavin_Reduct gmhA: phosphoheptose isomerase No signal peptide Absence of transmembrane helices%3B~Function unclear	gene	gene1984	http://www.ncbi.nlm.nih.gov/gene/?term=azo1943
azo1944	azo1944		azo1944	2133901	2135031	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to mll3445) of M. loti of 71%25 (trembl|Q98G8). InterPro: Bacterial luciferase (IPR002103). Pfam: Luciferase-like monooxygenase. no signal peptide. no TMHS	gene	gene1985	http://www.ncbi.nlm.nih.gov/gene/?term=azo1944
azo1945	azo1945		azo1945	2135167	2136183	-	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene1986	http://www.ncbi.nlm.nih.gov/gene/?term=azo1945
azo1946	azo1946	padB	padB	2136465	2139191	+	conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase	Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase. Homology to padB of Azoarcus sp. EbN1 of 58%25 (gnl|keqq|eba:ebA5393(KEGG)). InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655). Pfam: Molypdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain. no signal peptide. no TMHs%3B~Function unclear	gene	gene1987	http://www.ncbi.nlm.nih.gov/gene/?term=azo1946
azo1947	azo1947	padC	padC	2139188	2139835	+	conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase	Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase. Homology to padC of A. evansiin of 61%25 (trembl|Q8L3B5). Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes (By similarity). Pfam: 4Fe-4S binding domain. Tigrfam: napF: ferredoxin-type protein NapF. no signal peptide. no TMHs%3B~Family membership	gene	gene1988	http://www.ncbi.nlm.nih.gov/gene/?term=azo1947
azo1948	azo1948	padD	padD	2139832	2140698	+	conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase	Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase. Homology to padD of A. evansii of 43%25 (trembl|Q8L3B4(SRS) Pfam: DMSO reductase anchor subunit (DmsC) The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC). no signal peptide. 8 TMHs%3B~Family membership	gene	gene1989	http://www.ncbi.nlm.nih.gov/gene/?term=azo1948
azo1949	azo1949		azo1949	2140807	2141832	-	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene1990	http://www.ncbi.nlm.nih.gov/gene/?term=azo1949
azo1950	azo1950		azo1950	2142429	2143481	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Daro03003315 of Dechloromonas aromatica of 48%25 (gi|53729651|ref|ZP_00348492.1|(NBCI ENTREZ)). InterPro: BNR repeat (IPR002860) Pfam: BNR repeat BNR repeats are short repeats never found closer than 40 residues together%2C which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. no singal peptide. 1 TMHs	gene	gene1991	http://www.ncbi.nlm.nih.gov/gene/?term=azo1950
azo1951	azo1951		azo1951	2143526	2145898	+	putative exporter of RND superfamily	Probable Putative membrane protein MJ1562. TREMBL:Q8G9A8:32%25 identity%2C 52%25 similarity InterPro:IPR000873%3B AMP-bind. IPR002114%3B HPr_SerP_S Pfam:Patched:Patched family 2A067: efflux transporter putative Signal peptide present (Signal P predicted) TMH's 10 (TMHMM predicted)%3B~Family membership	gene	gene1992	http://www.ncbi.nlm.nih.gov/gene/?term=azo1951
azo1952	azo1952		azo1952	2145954	2147552	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03003313 of Dechloromonas aromatica of 60%25 (gi|53729649|ref|ZP_00149978.2|(NBCI ENTREZ)). Has PF06980%2C Protein of unknown function (DUF1302)%3BIPR010727%2CDUF1302%3BThis family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas. Signal peptide present. No TMHs%3B~Conserved hypothetical protein	gene	gene1993	http://www.ncbi.nlm.nih.gov/gene/?term=azo1952
azo1953	azo1953		azo1953	2147569	2148837	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Raeut03000741 of Ralstonia eutropha of 45%25 (gi|46131405|ref|ZP_00169583.2|(NBCI ENTREZ)). Pfam: Protein of unknown function (DUF1329). This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene1994	http://www.ncbi.nlm.nih.gov/gene/?term=azo1953
azo1954	azo1954		azo1954	2149426	2150184	-	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases. InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene1995	http://www.ncbi.nlm.nih.gov/gene/?term=azo1954
azo1955	azo1955	tms	tms	2150473	2151930	-	indole acetamide hydrolase	Indoleacetamide hydrolase (EC 3.5.1.-) (IAH) (Indole-3-acetamide hydrolase). Hydrolyzes indole-3-acetamide (IAM) into indole-3- acetic acid (IAA).%3B~Family membership	gene	gene1996	http://www.ncbi.nlm.nih.gov/gene/?term=azo1955
azo1956	azo1956	amiD	amiD	2151974	2153371	-	amidase	Putative amidase amiD%3B~Family membership	gene	gene1997	http://www.ncbi.nlm.nih.gov/gene/?term=azo1956
azo1957	azo1957	mhpC	mhpC	2153368	2154240	-	2-hydroxy-6-ketonona-2%2C4-dienedioic acid hydrolase	TREMBLNEW:47357: 69%25 identity%2C 80%25 similarity. 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate hydrolase. The alpha/beta hydrolase fold [1] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel)%2C containing 8 strands connected by helices Pfam: Ndr family. TIGR00148: conserved hypothetical protein%3B~High confidence in function and specificity	gene	gene1998	http://www.ncbi.nlm.nih.gov/gene/?term=azo1957
azo1958	azo1958		azo1958	2154237	2154995	-	putative Hydantoin racemase	Putative Hydantoin racemase%2C28%25 Identity toTrEMBL%3BQ7NTB3%2CQ885G0%2CQ6YNI1. SProt%3BQ00924. Has PF01177%2CAsp/Glu/Hydantoin racemase%3BIPR001920%2C Asp/Glu_race%3B This family contains aspartate racemase%2C glutamate racemase%2Chydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (EC: 5.1.1.13) and glutamate racemase (EC: 5.1.1.3) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity . Glutamate racemase%2C which interconverts L-glutamate into D-glutamate%2C is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterized aspartate and glutamate racemases%2C this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA).Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.	gene	gene1999	http://www.ncbi.nlm.nih.gov/gene/?term=azo1958
azo1959	azo1959		azo1959	2155368	2156693	-	hypothetical protein	Hypothetical protein SignalP reporting Non-secretory protein.	gene	gene2000	http://www.ncbi.nlm.nih.gov/gene/?term=azo1959
azo1960	azo1960	oxoR	oxoR	2156716	2157738	-	putative 2-Oxo-1%2C2-dihydroquinoline 8-monooxygenase%2C reductase component	Reductase component OxoR%2C of the 2-oxo-1%2C2-dihydroquinoline 8 monooxygenase protein. Enzyme involved in the second step of quinoline degradation by P. putida 86. Involved in bacterial aromatic compounds degradation.%3B~High confidence in function and specificity	gene	gene2001	http://www.ncbi.nlm.nih.gov/gene/?term=azo1960
azo1961	azo1961	oxoO1	oxoO1	2157971	2159311	-	putative 2-oxo-1%2C2-dihydroquinoline 8-monooxygenase%2Coxygenase component	Oxygenase component OxoO%2C of the 2-oxo-1%2C2-dihydroquinoline 8 monooxygenase protein. Enzyme involved in the second step of quinoline degradation by P. putida 86. Involved in bacterial aromatic compounds degradation.%3B~Function unclear	gene	gene2002	http://www.ncbi.nlm.nih.gov/gene/?term=azo1961
azo1962	azo1962		azo1962	2159507	2160076	-	conserved hypothetical flavin reductase	Conserved hypothetical flavin reductase. Homology to rsc0763 of R. solanacearum of 43%25 (TREMBL:Q8Y1C7). Pfam: Flavin reductase like domain. This is a flavin reductase family consisting of enzymes known to be flavin reductases as well as various oxidoreductase and monooxygenase components. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2003	http://www.ncbi.nlm.nih.gov/gene/?term=azo1962
azo1963	azo1963		azo1963	2160073	2161302	-	Conserved Hypothetical protein	Conserved Hypothetical protein has strong similarity 70%25 and 51%25 identity to PUTATIVE OXYGENASE SUBUNIT PROTEIN [Ralstonia solanacearum GMI1000]%2CTrEMBL:Q8XYC1%2C which has IPR003042%3B Rng_mnoxygenase and IPR001327%3B FAD_pyr_redox domain which is absent in this case. No Signal peptide or TMH being reported as present.%3B~Function unclear	gene	gene2004	http://www.ncbi.nlm.nih.gov/gene/?term=azo1963
azo1964	azo1964		azo1964	2161449	2162435	-	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene2005	http://www.ncbi.nlm.nih.gov/gene/?term=azo1964
azo1965	azo1965		azo1965	2162520	2163521	-	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene2006	http://www.ncbi.nlm.nih.gov/gene/?term=azo1965
azo1966	azo1966	todE	todE	2163648	2164532	-	probable 3-methylcatechol 2%2C3-dioxygenase	Methylcatechol 2%2C3-dioxygenase%2C TodE%2C is involved in the degradation of toluene. Similar to sprot|TODE_PSEPU (38%25) and to trembl|Q52031 (36%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3B~Specificity unclear	gene	gene2007	http://www.ncbi.nlm.nih.gov/gene/?term=azo1966
azo1967	azo1967		azo1967	2164557	2165000	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03003325 of Dechloromonas aromatica of 52%25 (gi|53729660|ref|ZP_00348498.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.	gene	gene2008	http://www.ncbi.nlm.nih.gov/gene/?term=azo1967
azo1968	azo1968	xylF	xylF	2165047	2165901	-	2-hydroxy-muconic semialdehyde hydrolase	TREMBL:Q93JW6: 67%25 identity%2C 81%25 similarity. 2-hydroxymuconic semialdehyde hydrolase (HMSH). hydrolysis of C-C bonds in ketonic substances CONVERSION OF 2-HYDROXYMUCONIC ACID SEMIALDEHYDE TO 2-HYDROXYPENT-24-DIENOATE. Pfam: abhydrolase: alpha/Beta hydrolase fold%3B thioesterase domain Absence of transmembrane helices (TMHMM predicted) prfB: peptide chain release factor 2%3B~High confidence in function and specificity	gene	gene2009	http://www.ncbi.nlm.nih.gov/gene/?term=azo1968
azo1969	azo1969	bphS	bphS	2166074	2166811	+	GntR family transcriptional regulator	GntR family transcriptional regulator%2C%3B~High confidence in function and specificity	gene	gene2010	http://www.ncbi.nlm.nih.gov/gene/?term=azo1969
azo1970	azo1970		azo1970	2166833	2167366	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of Rhizobium sp. NGR234 of 50%25 (tremblnew|AAQ87234(SRS)). No domain predicted. No signal peptide or TMH reported present.	gene	gene2011	http://www.ncbi.nlm.nih.gov/gene/?term=azo1970
azo1971	azo1971		azo1971	2167420	2168526	-	putative alcohol dehydrogenase	SPROT:ADH1_BACST:31%25 identity%3B 45%25 similarity Alcohol dehydrogenase (EC 1.1.1.1) (ADH-T). THERMOSTABLE NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE. an alcohol + nad(+) %3D an aldehyde or ketone + nadh. cofactor:binds 2 zinc ions per subunit (by similarity). InterPro: IPR002328%3B ADH_zinc. IPR002085:Adh_zn_family. Pfam:PF00107%3B ADH_zinc_N tdh: L-threonine 3-dehydrogenase%3B~Specificity unclear	gene	gene2012	http://www.ncbi.nlm.nih.gov/gene/?term=azo1971
azo1972	azo1972	mhpE	mhpE	2168585	2169613	-	4-hydroxy 2-oxovalerate aldolase	4-hydroxy-2-oxovalerate aldolase%2C MhpE%2C propable involved in the degradation of phenol. Similar to trembl|Q9RHN1 (82%25) and to sprot|MHPE_ECOLI (53%25). InterPro (PF00682): HMG-CoA Lyase-like family Hydroxymethylglutaryl-CoA lyase catalyses the conversion of (S)-3-hydroxy-3-methylglutaryl-CoA to acetyl-CoA and acetoacetate during the final step of ketogenesis and leucine catabolism. The HMGL-like signature is found in a diverse set of enzymes including various aldolases and a region of pyruvate carboxylase%3B~High confidence in function and specificity	gene	gene2013	http://www.ncbi.nlm.nih.gov/gene/?term=azo1972
azo1973	azo1973	mhpF	mhpF	2169628	2170548	-	acetaldehyde dehydrogenase	This family of bacterial enzymes catalyse the formation of acetyl- CoA from acetaldehyde in the 3-hydroxyphenylpropinoate degradation pathway%2C%3B~High confidence in function and specificity	gene	gene2014	http://www.ncbi.nlm.nih.gov/gene/?term=azo1973
azo1974	azo1974	mhpD	mhpD	2170617	2171411	-	MhpD protein	This family consist of various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds%2C TREMBL:Q51981 (54%25 identity)%3B SWISSPROT:P77608 (50%25 identity). InterPro (IPR002607): Hydratase/decarboxylase Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity	gene	gene2015	http://www.ncbi.nlm.nih.gov/gene/?term=azo1974
azo1975	azo1975	mhpB	mhpB	2171448	2172401	-	2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase	2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase similar in function (51%25 identity) to TrEMBL: P54711%2CPF02900%2C IPR004183 The LigAB enzyme (a protocatechuate 4%2C5-dioxygenase EC: 1.13.11.8)%2C of Sphingomonas paucimobilis oxidizes protocatechuate (or 3%2C4-dihydroxybenzoic acid%2CPCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family%2C which catalyzes the ring-opening reaction of protocatechuate and related compounds . Other members of this family include 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase (EC: 1.13.11.15) and 2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase. FUNCTION: Extradiol cleavage of 2%2C3-dihydroxyphenylpropionic acid. COFACTOR: Ferrous ion. PATHWAY: 3-hydroxyphenylpropionate degradation. SUBUNIT: Homotetramer. No Signal Peptide or TMH being reported as present.%3B~High confidence in function and specificity	gene	gene2016	http://www.ncbi.nlm.nih.gov/gene/?term=azo1975
azo1976	azo1976	ohpC	ohpC	2172426	2173322	-	2-hydroxy-6-ketonona-2%2C4-dienedoic acid hydrolase	Hypothetical protein Rv2715/MT2788/Mb2734. TREMBL:Q9KH20: 58%25 identity%2C 73%25 similarity 2-hydroxy-6-ketonona-2%2C4-dienedoic acid hydrolase%3B OhpC [Rhodococcus sp.] Catalysis of the reaction: 2-hydroxy-6-keto-nona-2%2C4-dienedioate + OH- %3D cis-2-hydroxypenta-2%2C4-dienoate + succinate. Pfam: alpha/ beta hydrolase%3B Ndr family%3B B12 binding domain. No signal peptide (Signal P predicted) or transmembrane helices (TMHMM predited) TIGRFAM: Co A. E activ TIGR00044: conserved hypothetical protein%3B~Family membership	gene	gene2017	http://www.ncbi.nlm.nih.gov/gene/?term=azo1976
azo1977	azo1977	oxoO2	oxoO2	2173724	2175064	-	putative 2-oxo-1%2C2-dihydroquinoline 8-monooxygenase%2Coxygenase component	Oxygenase component OxoO%2C of the 2-oxo-1%2C2-dihydroquinoline 8 monooxygenase protein. Enzyme involved in the second step of quinoline degradation by P. putida 86. Involved in bacterial aromatic compounds degradation. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit arcC: carbamate kinase%3B~Function unclear	gene	gene2018	http://www.ncbi.nlm.nih.gov/gene/?term=azo1977
azo1978	azo1978		azo1978	2175414	2176190	+	conserved hypothetical protein	TREMBL:Q89PP9: 66%25 identity%2C 79%25 similarity. InterPro:IPR007325%3B Cyclase. Pfam:PF04199%3B Cyclase No signal peptide present. Absence of trans-membrane helices (TMHMM predicted).%3B~Function unclear	gene	gene2019	http://www.ncbi.nlm.nih.gov/gene/?term=azo1978
azo1979	azo1979		azo1979	2176634	2176756	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2020	http://www.ncbi.nlm.nih.gov/gene/?term=azo1979
azo1980	azo1980		azo1980	2176749	2178953	+	conserved hypothetical indolepyruvate ferredoxin oxidoreductase%2C alpha subunit	Conserved hypothetical indolepyruvate oxidoreductase%2C alpha subunit. Homology to mlr5448 of M. loti of 69%25 (trembl|Q98BS4). CATALYZES THE FERREDOXIN-DEPENDENT OXIDATIVE DECARBOXYLATION OF ARYLPYRUVATES (BY SIMILARITY). no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2021	http://www.ncbi.nlm.nih.gov/gene/?term=azo1980
azo1981	azo1981		azo1981	2178974	2180560	+	conserved hypothetical indolepyruvate ferredoxin oxidoreductase. beta subunit	Conserved hypothetical indolepyruvate ferredoxin oxidoreductase%2C beta subunit. Homology to rsc1828 of R. solanacearum of 53%25 (trembl|Q8XYD0). Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2022	http://www.ncbi.nlm.nih.gov/gene/?term=azo1981
azo1982	azo1982	vanB2	vanB2	2180606	2181583	+	probable vanillate O-demethylase oxidoreductase	Probable vanillate O-demethylase oxidoreductase (Vanillate degradation ferredoxin-like protein). Homology to vanB of P. sp HR199 of 42%25 (sprot|VANB_PSEUH). The vanillate demethylase (EC:1.14.13.82) consists of two proteins: an oxygenase and an oxygenase reductase (VanA and VanB). This enzyme is involved in the vanillate degradation%2C a key intermediate in the degradation of lignin. Pfam: Oxidoredutase FAD-binding domain%3B Oxidoreductase NAD-binding domain%3B 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~Family membership	gene	gene2023	http://www.ncbi.nlm.nih.gov/gene/?term=azo1982
azo1983	azo1983	carBb2	carBb2	2181600	2182922	+	putative dioxygenase hydroxylase large component	Hydroxylase large component of 1%2C2-dioxygenase protein complex%2C involved in aromatic compounds degradation. Putative 2'-aminobiphenyl-2%2C3-diol 1%2C2-dioxygenase%2C CarBb. Involved in the aerobic degradation of carbazole by P.resinovorans sp. strain CA10. XlyY: Benzoate 12-dioxygenase beta subunit (EC 1.14.12.10). DEGRADATION OF BENZOATE TO 2-HYDRO-12-DIHYDROXYBENZOATE (DHB).%3B~High confidence in function and specificity	gene	gene2024	http://www.ncbi.nlm.nih.gov/gene/?term=azo1983
azo1984	azo1984	carBa2	carBa2	2183143	2183625	+	putative dioxygenase%2C hydroxylase small component	Hydroxylase large component of 1%2C2-dioxygenase protein complex%2C involved in aromatic compounds degradation. Putative 2'-aminobiphenyl-2%2C3-diol 1%2C2-dioxygenase%2C CarBa. Involved in the aerobic degradation of carbazole by P.resinovorans sp. strain CA10. XlyX: Benzoate 12-dioxygenase alpha subunit (EC 1.14.12.10). DEGRADATION OF BENZOATE TO 2-HYDRO-12-DIHYDROXYBENZOATE (DHB). Benzoate 12-dioxygenase beta subunit (EC 1.14.12.10). DEGRADATION OF BENZOATE TO 2-HYDRO-12-DIHYDROXYBENZOATE (DHB). THE BETA SUBUNIT MAY BE RESPONSIBLE FOR THE SUBSTRATE SPECIFICITY OF THE ENZYME. InterPro: Aromatic-ring-hydroxylating dioxygenase beta subunit%3B~High confidence in function and specificity	gene	gene2025	http://www.ncbi.nlm.nih.gov/gene/?term=azo1984
azo1985	azo1985		azo1985	2183639	2185273	+	putative AMP-binding protein	Similar to TREMBL:Q89PS8 (59%25 identity). InterPro (IPR000873): AMP-dependent synthetase and ligase. Pfam (PF00501): AMP-binding enzyme.%3B~Function unclear	gene	gene2026	http://www.ncbi.nlm.nih.gov/gene/?term=azo1985
azo1986	azo1986		azo1986	2185270	2186448	+	conserved hypothetical protein	Entry name TREMBL:Q89PQ1 Prim. accession # Q89PQ1 Identities %3D 241/381 (63%25) Thiolase%2C N-terminal domain (Pfam predicted) Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0	gene	gene2027	http://www.ncbi.nlm.nih.gov/gene/?term=azo1986
azo1987	azo1987		azo1987	2186445	2187704	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2C%3B~Specificity unclear	gene	gene2028	http://www.ncbi.nlm.nih.gov/gene/?term=azo1987
azo1988	azo1988		azo1988	2187853	2188638	+	conserved hypothetical protein	TREMBL:Q8XYC3: 64%25 identity%2C 75%25 similarity Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form a part of the active site. InterPro:IPR007325%3B Cyclase. Pfam: PF04199%3B Cyclase Absence of signal peptide. Absence of transmembrane helices%3B~Function unclear	gene	gene2029	http://www.ncbi.nlm.nih.gov/gene/?term=azo1988
azo1989	azo1989		azo1989	2188649	2189377	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q7WG84 (46%25 identity)%3B SWISSPROT:P17611 (30%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene2030	http://www.ncbi.nlm.nih.gov/gene/?term=azo1989
azo1990	azo1990	braC	braC	2189440	2190591	+	putative Leu/Ile/Val-binding protein	The transport of branched-chain amino acids in P. aeruginosa is mediated by two distinct systems%2C the leucine%2C isoleucine%2C and valine I and II transports systems. Periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars%2C and ions. BraC is the structural gene for periplasmic binding proteins in P. aeruginosa. Similar to trembl|Q9RYP6 (49%25) and to sprot|BRAC_PSEAE (22%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene2031	http://www.ncbi.nlm.nih.gov/gene/?term=azo1990
azo1991	azo1991		azo1991	2190910	2191947	+	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q8XRX6 (55%25) and to trembl|Q7WCY3 (53%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting nine Tmhelix.%3B~Specificity unclear	gene	gene2032	http://www.ncbi.nlm.nih.gov/gene/?term=azo1991
azo1992	azo1992		azo1992	2191944	2193803	+	ABC transporter ATP-binding/permease protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. The integral inner-membrane proteins translocate the substrate across the membrane. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX5 (52%25) and to trembl|Q89CG4 (45%25). Pfam (PF00005): ABC transporter Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop) TMHMM reporting nine Tmhelix.%3B~Specificity unclear	gene	gene2033	http://www.ncbi.nlm.nih.gov/gene/?term=azo1992
azo1993	azo1993		azo1993	2193803	2194564	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX4 (66%25) and to trembl|Q89PQ7 (62%25). Smart: AAA ATPases%3B~Specificity unclear	gene	gene2034	http://www.ncbi.nlm.nih.gov/gene/?term=azo1993
azo1994	azo1994	apbA2	apbA2	2195039	2196049	+	2-dehydropantoate 2-reductase	Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169) (KPA reductase) (KPR). Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). apbA_panE: 2-dehydropantoate 2-reductase%3B~Specificity unclear	gene	gene2035	http://www.ncbi.nlm.nih.gov/gene/?term=azo1994
azo1995	azo1995		azo1995	2196116	2196889	+	conserved hypothetical protein	41%25 Aldolase_II_N. Class II Aldolase and Adducin N-terminal domain Pfam: PF00596%3B Aldolase_II%3B 1. fucA: L-fuculose phosphate aldolase%3B~High confidence in function and specificity	gene	gene2036	http://www.ncbi.nlm.nih.gov/gene/?term=azo1995
azo1996	azo1996	acS1	acS1	2197112	2198719	+	putative acetyl-coenzyme a synthetase	Acetyl-coenzyme A synthetase enables the cell to use acetate during aerobic growth to generate energy via the tca cycle%2C and biosynthetic compounds via the glyoxylate shunt. acetylates chey%2C the response regulator involved in flagellar movement and chemotaxis. Entry name SWISSPROT:ACSA_ECOLI Prim. accession # P27550 Identities %3D 145/546 (26%25) Pfam PF00501%3B AMP-binding%3B 1. InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 1. Number of predicted TMHs: 0%3B~Family membership	gene	gene2037	http://www.ncbi.nlm.nih.gov/gene/?term=azo1996
azo1997	azo1997	badR	badR	2198864	2199388	+	putative MarR-family transcriptional regulator	Putative transcriptional activatory protein BadR (Benzoate anaerobic degradation regulator). Similar to SWISSPROT: sprot|BADR_RHOPA (25%25 Rhodopseudomonas palustris%2C transcriptional activatory protein BadR (benzoate anaerobic degradation regulator)) InterPro: IPR000835 HTH_MarR. Pfam: PF01047 MarR family.%3B~Family membership	gene	gene2038	http://www.ncbi.nlm.nih.gov/gene/?term=azo1997
azo1998	azo1998		azo1998	2199402	2200142	-	Purine-nucleoside phosphorylase	Purine-nucleoside phosphorylase (Inosine phosphorylase) (PNPase) InterPro: Purine and other phosphorylases family 2%3B~Family membership	gene	gene2039	http://www.ncbi.nlm.nih.gov/gene/?term=azo1998
azo1999	azo1999	typA	typA	2200267	2202084	+	GTP-binding elongation factor	GTP-binding elongation factor%2C%3B~High confidence in function and specificity	gene	gene2040	http://www.ncbi.nlm.nih.gov/gene/?term=azo1999
azo2000	azo2000	galU	galU	2202353	2203258	-	UTP-glucose-1-phosphate uridylyltransferase	UTP--glucose-1-phosphate uridylyltransferase 1 (EC 2.7.7.9) (UDP- glucose pyrophosphorylase 1) (UDPGP 1) (Alpha-D-glucosyl-1-phosphate uridylyltransferase 1) (Uridine diphosphoglucose pyrophosphorylase 1). InterPro: ADP-glucose pyrophosphorylase ispD: 4-diphosphocytidyl-2C-methyl-D-er%3B~High confidence in function and specificity	gene	gene2041	http://www.ncbi.nlm.nih.gov/gene/?term=azo2000
azo2001	azo2001		azo2001	2203255	2205336	-	DNA ligase (NAD+)	DNA ligase (Polydeoxyribonucleotide synthase [NAD+]). This protein catalyzes the formation of phosphodiester linkages between 5-phosphoryl and 3-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. TIGRFAM: dnlj: DNA ligase NAD-dependent.%3B~High confidence in function and specificity	gene	gene2042	http://www.ncbi.nlm.nih.gov/gene/?term=azo2001
azo2002	azo2002		azo2002	2205341	2206462	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ne2283 of N. europaea of 35%25 (trembl|Q82SM8(SRS)). Pfam: ZipA%2C C-ternial FtsZ-binding domaine. This family represents the ZipA C-terminal domain. ZipA is involved in septum formation in bacterial cell division. Its C-terminal domain binds FtsZ%2C a major component of the bacterial septal ring. The structure of this domain is an alpha-beta fold with three alpha helices and a beta sheet of six antiparallel beta strands. The major loops protruding from the beta sheet surface are thought to form a binding site for FtsZ. no singal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene2043	http://www.ncbi.nlm.nih.gov/gene/?term=azo2002
azo2003	azo2003	smc	smc	2206478	2210014	-	chromosome segregation protein	Chromosome partition protein smc. PLAYS AN IMPORTANT ROLE IN CHROMOSOME STRUCTURE AND PARTITIONING. ESSENTIAL FOR CHROMOSOME PARTITION. InterPro: SMC family C-terminal domain%3B~High confidence in function and specificity	gene	gene2044	http://www.ncbi.nlm.nih.gov/gene/?term=azo2003
azo2004	azo2004	dapC	dapC	2210146	2211420	+	probable N-succinyldiaminopimelate aminotransferase	N-succinyldiaminopimelate aminotransferase%2C DapC converting N-succinyl-2-amino-6-ketopimelate%2C the product of the succinylase DapD%2C to N-succinyl-L%2CL-DAP%2C the substrate of the desuccinylase DapE. Similar to trembl|Q8XZK1 (63%25) and to pir|F83189 (57%25). Pfam: Aminotransferase%2C class I and II%3B~Specificity unclear	gene	gene2045	http://www.ncbi.nlm.nih.gov/gene/?term=azo2004
azo2005	azo2005	dapD	dapD	2211431	2212252	+	2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase	2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase. Homology to dapD of E. coli of 74%25 (sprot|DAPD_ECOLI). Involved in biosynthesis of diaminopimelate and lysine from aspartate semialdehyde. Catalytic activity: succinyl-coa + (r)-2%2C3%2C4%2C5-tetrahydropyridine- 2%2C6-dicarboxylate + h(2)o %3D coa + (r)-2-(succinylamino)-6- oxoheptanedioate. InterPro: Bacterial transferase hexapeptide repeat (IPR001451) no signal peptide no TMH%3B~High confidence in function and specificity	gene	gene2046	http://www.ncbi.nlm.nih.gov/gene/?term=azo2005
azo2006	azo2006		azo2006	2212337	2213524	+	probable twitching motility protein	Tfp pilus retraction protein pilU%2C probable involved in twitching motility mechanism%2C%3B~Specificity unclear	gene	gene2047	http://www.ncbi.nlm.nih.gov/gene/?term=azo2006
azo2007	azo2007	dapE	dapE	2213566	2214708	+	succinyl-diaminopimelate desuccinylase	The dapE gene of Escherichia coli encodes N-succinyl-L-diaminopimelic acid desuccinylase%2C an enzyme that catalyzes the synthesis of LL-diaminopimelic acid%2Cone of the last steps in the diaminopimelic acid-lysine pathway. Similar to sprot|DAPE_ECOLI (55%25) and to trembl|Q7NY19 (68%25). Pfam (PF01546): Peptidase family M20/M25/M40%3B~High confidence in function and specificity	gene	gene2048	http://www.ncbi.nlm.nih.gov/gene/?term=azo2007
azo2008	azo2008		azo2008	2214717	2215679	+	site-specific DNA-methyltransferase (adenine-specific)	Adenine specific methylase%2C HemK family%2C 73%25 Identity to TrEMBL%3BQ5NYT6. Has Pfam%3BPF06325%2C Ribosomal protein L11 methyltransferase (PrmA) This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.%3B~Family membership	gene	gene2049	http://www.ncbi.nlm.nih.gov/gene/?term=azo2008
azo2009	azo2009	rcp1	rcp1	2215747	2216205	+	putative two-component response regulator	Putative Response regulator rcp1. Forms a two-component system with cph1 in which it acts as reciever substrate. Similar to SWISSPROT: sprot|RCP1_SYNY3 (30%25 Synechocystis sp.%2C Rcp1) Pfam: PF00072 Response_reg.%3B~Function unclear	gene	gene2050	http://www.ncbi.nlm.nih.gov/gene/?term=azo2009
azo2010	azo2010		azo2010	2216245	2216439	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV1087 of C.violaceum of 69%25 (trembl:Q7NZ35). Has PF04384 %3B Protein of unknown function (DUF528)%3BIPR007479: Small bacterial protein of unknown function. No signal peptide or TMH present.	gene	gene2051	http://www.ncbi.nlm.nih.gov/gene/?term=azo2010
azo2011	azo2011	fdx2	fdx2	2216436	2216780	-	Fdx2 protein	Ferredoxin 2Fe-2S. Homology to fdx of E. coli of 70%25 (sprot|FER_ECOLI ). Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Although the function of this ferredoxin is unknown it is probable that it has a role as a cellular electron transfer protein. Involved in the in vivo assembly of the Fe-S clusters in a wide variety of iron- sulfur proteins. InterPro: Ferredoxin (IPR001055)%3B Adrenodoxin (IPR001055) Pfam: 2Fe-2S iorn-sulfur cluster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2052	http://www.ncbi.nlm.nih.gov/gene/?term=azo2011
azo2012	azo2012		azo2012	2216777	2218645	-	probable chaperone protein	Region start changed from 2218553 to 2218646 (93 bases)	gene	gene2053	http://www.ncbi.nlm.nih.gov/gene/?term=azo2012
azo2013	azo2013	hscB	hscB	2218661	2219194	-	putative co-chaperone HscB	Putative xo-chaperone protein hscB. Homology to hscB of E. coli of 37%25 (sprot|HSCB_ECOLI) Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward hscA (By similarity). InterPro: Co-chaperone Hsc20 (IPR004640)%3BDNAJ N-terminal domain (IPR001623) Tigrfam: hscB: co-chaperone Hsc20 no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2054	http://www.ncbi.nlm.nih.gov/gene/?term=azo2013
azo2014	azo2014	yfhF	yfhF	2219199	2219522	-	putative regulatory Protein	Putative regulatory Protein yfhF%2C 72%25 identity (82%25 similarity) to TrEMBL%3BP36539 of E.coli. Has PF01521%2C HesB-like domain%3B(IPR000361%2C HesB_yadR_yfhF)%3B This family includes HesB which may be involved in nitrogen fixation%3B the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which P46847 and NP31774 also contains NifU-like domains NifU which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli%2C the hesB-like gene iscN is required for nitrogen fixation.%3B~High confidence in function and specificity	gene	gene2055	http://www.ncbi.nlm.nih.gov/gene/?term=azo2014
azo2015	azo2015	iscU	iscU	2219543	2219926	-	NifU-related protein	NifU-related protein. Homology to iscU of A. vinelandii of 79%25 (trembl|O31270). IscU is a homologue of the N-terminal region of NifU%2C an protein MAY BE INVOLVED IN THE FORMATION OR REPAIR OF [FE-S] CLUSTERS PRESENT IN IRON-SULFUR PROTEINS mostly found in nitrogen-fixing bacteria. InterPro: NifU-like N terminal domain (IPR002871) Pfam: NifU-like N-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2056	http://www.ncbi.nlm.nih.gov/gene/?term=azo2015
azo2016	azo2016	iscS1	iscS1	2219958	2221169	-	cysteine desulfurase	Cysteine desulfurase (NifS protein homolog). Homology to iscS of E. coli of 72%25 (sprot|ISCS_ECOLI). Catalyzes the removal of elemental sulfur from cysteine to produce alanine (By similarity). Functions as a sulfur delivery protein for nad%2C biotin and fe-s cluster synthesis. Pfam: Aminotransferase class V no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2057	http://www.ncbi.nlm.nih.gov/gene/?term=azo2016
azo2017	azo2017	iscS2	iscS2	2221203	2222351	-	probable cysteine desulfurase	Probable cysteine desulfurase (NifS protein homolog). Homology to iscS of M. thermophila of 40%25 (sprot|ISCS_METTE) Catalyzes the removal of elemental sulfur from cysteine to produce alanine (By similarity). InterPro: Aminotransferase class-V (IPR000192) Pfam: aminotransferase class-V no signal peptide no TMHs ahpD: alkylhydroperoxidase AhpD%3B~Family membership	gene	gene2058	http://www.ncbi.nlm.nih.gov/gene/?term=azo2017
azo2018	azo2018		azo2018	2222358	2222840	-	Rrf2 family protein	RrF2 family protein. These are small proteins of 12 to 18 kD which seem to contain a signal sequence%2C and may represent a family of probable transcriptional regulators. Similar to SWISSPROT: sprot|YOR2_AZOVI (50%25 Azotobacter vinelandii%2C hypothetical upf0074 protein) / TREMBL: trembl|Q8Y0M5 (72%25 Ralstonia solanacearum (Pseudomonas solanacearum)%2C hypothetical protein rsc1018) Pfam: PF02082 Transcriptional regulator. TIGRFAM: TIGR00738 rrf2 family protein (Uncharacterized protein family UPF0074 / putative transcriptional regulator). Signal P reporting signal peptide. HTH reporting nucleic acid binding motif.%3B~Family membership	gene	gene2059	http://www.ncbi.nlm.nih.gov/gene/?term=azo2018
azo2019	azo2019	cysE	cysE	2222961	2223716	-	serine O-acetyltransferase	Probable serine acetyltransferase (EC 2.3.1.30). Homology to cysE of B. subtilis of 48%25 (sprot|CYSE_BACSU). no signal peptide no TMHs%3B~Family membership	gene	gene2060	http://www.ncbi.nlm.nih.gov/gene/?term=azo2019
azo2020	azo2020		azo2020	2223803	2224531	-	RNA methyltransferase%2C TrmH family%2C group 1	tRNA/rRNA methyltransferase%3B~Specificity unclear	gene	gene2061	http://www.ncbi.nlm.nih.gov/gene/?term=azo2020
azo2021	azo2021	suhB1	suhB1	2224621	2225433	+	putative inositol-1-monophosphatase	Inositol-1-monophosphatase (EC 3.1.3.25) (IMPase) (Inositol-1- phosphatase) (I-1-Pase).May act by enhancing the synthesis or degradation of phosphorylated messenger molecules. Catalytic activity: myo-inositol 1-phosphate + h(2)o %3D myo- inositol + phosphate. 52%25 Inositol_P. Pfam:PF00459%3B inositol_P%3B 1.%3B~High confidence in function and specificity	gene	gene2062	http://www.ncbi.nlm.nih.gov/gene/?term=azo2021
azo2022	azo2022		azo2022	2225579	2226112	-	conserved hypothetical secreted protein	Conserved hypotheticalsecreted protein. Homology to bll4707 of B.japonicum of 40%25 (tremble:Q89L41). No domains predicted. Signal P reporting signal peptide present. No TMH reported to be present.%3B~Conserved hypothetical protein	gene	gene2063	http://www.ncbi.nlm.nih.gov/gene/?term=azo2022
azo2023	azo2023		azo2023	2227005	2227280	+	conserved hypothetical protein	Family membership	gene	gene2064	http://www.ncbi.nlm.nih.gov/gene/?term=azo2023
azo2024	azo2024	yoeB	yoeB	2227270	2227524	+	conserved hypothetical protein	Conserved Hypothetical protein%2C[yoeB]%2C69%25 identical(85%25 similarity) to SwissPort%3BP56605. TrEMBL%3BQ8FG53 Has PF05015%2C Plasmid maintenance system killer protein (IPR007711%2C Plasmid_killer) %3BSeveral plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid%2C the less stable inhibitor is inactivated more rapidly than the toxin%2C allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin. Has (IPR009614)PF06769%2C Protein of unknown function (DUF1224)%3BThis family consists of several short%2C hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	gene	gene2065	http://www.ncbi.nlm.nih.gov/gene/?term=azo2024
azo2025	azo2025		azo2025	2227858	2228355	-	conserved hypothetical acetyltransferase	Conserved hypothetical acetyltransferase. Homology to glr3475 of G. violaceus of 40%25 (trembl|Q7NFP9). Pfam: Acetyltransferase (GNAT) family. no signal peptide. no TMHs%3B~Family membership	gene	gene2066	http://www.ncbi.nlm.nih.gov/gene/?term=azo2025
azo2026	azo2026		azo2026	2228352	2228645	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to plu0180 of P.luminescens of 37%25 (trembl:Q7N9X1). No domains predicted. No TMHs. No signal peptide.	gene	gene2067	http://www.ncbi.nlm.nih.gov/gene/?term=azo2026
azo2027	azo2027		azo2027	2229090	2229269	+	conserved hypothetical truncated transposase	Conserved hypothetical truncated transposase. Homology to Reut02001235 of Ralstonia metallidurans of 31%25 (gi|48772472|ref|ZP_00276814.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.%3B~Conserved hypothetical protein	gene	gene2068	http://www.ncbi.nlm.nih.gov/gene/?term=azo2027
azo2028	azo2028		azo2028	2229309	2229731	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank no domains predicted no signal peptide no TMHs	gene	gene2069	http://www.ncbi.nlm.nih.gov/gene/?term=azo2028
azo2029	azo2029		azo2029	2229758	2230090	+	conserved hypothetical transposase	Conserved hypothetical transposase. Homology to ebB8 of Azoarcus sp. EbN1 of 91%25 (gnl|keqq|eba:ebB8(KEGG)). Pfam: IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain%2C but they are probably essential for transposition. No signal peptide. Probable 1 TMHs%3B~Conserved hypothetical protein	gene	gene2070	http://www.ncbi.nlm.nih.gov/gene/?term=azo2029
azo2030	azo2030		azo2030	2230168	2230368	+	hypothetical truncated transposase	Hypothetical truncated transposase. Homology to the N-terminus of ebA290 of Azoarcus sp. EbN1 of 92%25 (gnl|keqq|eba:ebA290(KEGG)). No domains predicted. No signal peptide. No TMHs.	gene	gene2071	http://www.ncbi.nlm.nih.gov/gene/?term=azo2030
azo2031	azo2031		azo2031	2230396	2231724	+	hypothetical truncated transposase	Hypothetical truncated transposase. Homology to the C-terminus of ebA290 of Azoarcus sp. EbN1 of 67%25 (gnl|keqq|eba:ebA290(KEGG)). Pfam: Transposase IS66 family. No signal peptide. No TMHs	gene	gene2072	http://www.ncbi.nlm.nih.gov/gene/?term=azo2031
azo2032	azo2032		azo2032	2231721	2232221	+	Hypothetical protein	Hypothetical protein%2C very weak homology with hits in the database. Has No domains%2C repeats%2C motifs or features detected.	gene	gene2073	http://www.ncbi.nlm.nih.gov/gene/?term=azo2032
azo2033	azo2033		azo2033	2232140	2232754	-	hypothetical truncated transposase	Hypothetical truncated transposase. Homology to the N-terminus of tnp16A of Azoarcus sp. EbN1 of 54%25 (gnl|keqq|eba:ebA690(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene2074	http://www.ncbi.nlm.nih.gov/gene/?term=azo2033
azo2034	azo2034		azo2034	2232808	2233167	-	conserved hypothetical transposase helper protein	Conserved hypothetical transposase helper protein. Homology to ebB98 of Azoarcus sp. EbN1 of 74%25 (gnl|keqq|eba:ebB98(KEGG)). Pfam: IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain%2C but they are probably essential for transposition. No signal peptide. No TMHs.%3B~Conserved hypothetical protein	gene	gene2075	http://www.ncbi.nlm.nih.gov/gene/?term=azo2034
azo2035	azo2035		azo2035	2233167	2233475	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebD29 of Azoarcus sp. EbN1 of 55%25 (gnl|keqq|eba:ebD29(KEGG)). no domains predicted. no signal peptide. no TMHs.	gene	gene2076	http://www.ncbi.nlm.nih.gov/gene/?term=azo2035
azo2036	azo2036		azo2036	2234650	2235642	-	conserved hypothetical protein		gene	gene2077	http://www.ncbi.nlm.nih.gov/gene/?term=azo2036
azo2037	azo2037		azo2037	2236135	2236755	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to XAC2237 of X.axonopodis of 33%25 (trembl:Q8PKD8). No domain predicted. No TMHs. No signal peptide.	gene	gene2078	http://www.ncbi.nlm.nih.gov/gene/?term=azo2037
azo2038	azo2038		azo2038	2237096	2237575	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RL074 of Pseudomonas aeruginosa of 34%25 (trembl:Q7WXY6). No domains predicted. No TMHs. No singal peptide.	gene	gene2079	http://www.ncbi.nlm.nih.gov/gene/?term=azo2038
azo2039	azo2039		azo2039	2237967	2238542	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Gritica. No homology to the data bank. No domains predicted. No signal peptide. No TMHs	gene	gene2080	http://www.ncbi.nlm.nih.gov/gene/?term=azo2039
azo2040	azo2040	repA	repA	2238649	2239074	+	probable replicase protein(repA)	Probable replicase protein%2Cfunctional similarity(67%25) to TrEMBL Q6I6A6%2CPF04796%3BIPR006881 Has pfam04796%2C RepA_C domain%2C Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood. No Signal peptide or TMH are reported to be present.%3B~Specificity unclear	gene	gene2081	http://www.ncbi.nlm.nih.gov/gene/?term=azo2040
azo2041	azo2041		azo2041	2239144	2239623	+	protein kinase	Probable replicase protein(repA)%2Cfunctional similarity(67%25) to TrEMBL Q6I6A6%2CPF04796%3BIPR006881 Has pfam04796%2C RepA_C domain%2C Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood. No Signal peptide or TMH are reported to be present.	gene	gene2082	http://www.ncbi.nlm.nih.gov/gene/?term=azo2041
azo2042	azo2042		azo2042	2239863	2240681	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA436 of Azoarcus sp. EbN1 of 49%25 (gnl|keqq|eba:ebA436(KEGG)). No domains predicted. No signal peptide. TMHMM2 reporting presence of 2 TMH's.%3B~Conserved hypothetical protein	gene	gene2083	http://www.ncbi.nlm.nih.gov/gene/?term=azo2042
azo2043	azo2043		azo2043	2240702	2241337	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA439 of Azoarcus sp. EbN1 of 59%25 (gnl|keqq|eba:ebA439(KEGG)). No domains predicted. No TMHs signal peptide present.%3B~Conserved hypothetical protein	gene	gene2084	http://www.ncbi.nlm.nih.gov/gene/?term=azo2043
azo2044	azo2044		azo2044	2241354	2241563	+	hypothetical protein	Conserved hypothetical protein. No homology to a protein of similar size in the data base. No domains predicted. No TMHs. No signal peptide.	gene	gene2085	http://www.ncbi.nlm.nih.gov/gene/?term=azo2044
azo2045	azo2045		azo2045	2242277	2244052	+	Hypothetical protein	Hypothetical protein%2C 28%25 identity (45%25 similarity) to TrEMBL%3BQ7VHD7. Weak homology with hits in the Database spanning the entire lenghth of Protein. Has PF03235%2CProtein of unknown function DUF262%3B Interpro%3BIPR004919.%3B~Function unclear	gene	gene2086	http://www.ncbi.nlm.nih.gov/gene/?term=azo2045
azo2046	azo2046		azo2046	2244049	2246235	+	Hypothetical protein	Hypothetical protein 27%25 identity to TrEMBL%3BQ7VHD8. Signal Peptide%2C or any known features not present.	gene	gene2087	http://www.ncbi.nlm.nih.gov/gene/?term=azo2046
azo2047	azo2047	radC2	radC2	2246568	2247158	+	DNA repair protein	DNA repair protein radC homolog.%3B~High confidence in function and specificity	gene	gene2088	http://www.ncbi.nlm.nih.gov/gene/?term=azo2047
azo2048	azo2048		azo2048	2247594	2248190	+	conserved hypothetical protein	Hypothetical protein yfdR. The HD domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism%2C signal transduction and possibly other functions in bacteria%2Carchaea and eukaryotes TREMBL:Q8HAA3: 41%25 identity%2C52%25 similarity InterPro:IPR003607%3B Met_phsphohydro. SMART:SM00471%3B HDc hstdl_phs_rel: histidinol phosphatase-r No signal peptide No transmembrane helices%3B~Function unclear	gene	gene2089	http://www.ncbi.nlm.nih.gov/gene/?term=azo2048
azo2049	azo2049		azo2049	2248683	2248952	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to BTH_I1915 of Burkholderia thailandensis of 45%25. Pfam: Prophage CP4-57 regulatory protein (AlpA).%2C This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant%2Coverproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins. No signal peptide. No TMHs	gene	gene2090	http://www.ncbi.nlm.nih.gov/gene/?term=azo2049
azo2050	azo2050		azo2050	2249016	2250140	-	putative H repeat-associated protein	Putative H repeat-associated protein PF01609 Transposase_11%2C Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily%2C which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4%2C IS421%2C IS5377%2C IS427%2C IS402%2C IS1355%2C IS5%2C which was original isolated in bacteriophage lambda. SignalP reporting signal Peptide to be present No TMH reproted as present.%3B~High confidence in function and specificity	gene	gene2091	http://www.ncbi.nlm.nih.gov/gene/?term=azo2050
azo2051	azo2051		azo2051	2250271	2251566	-	site-specific recombinase%2C phage integrase family	Integrase. INTEGRASE IS NECESSARY FOR INTEGRATION OF THE PHAGE INTO THE HOST GENOME BY SITE-SPECIFIC RECOMBINATION. IN CONJUNCTION WITH EXCISIONASE INTEGRASE IS ALSO NECESSARY FOR EXCISION OF THE PROPHAGE FROM THE HOST GENOME. InterPro: Phage integrase%3B~High confidence in function and specificity	gene	gene2092	http://www.ncbi.nlm.nih.gov/gene/?term=azo2051
azo2052	azo2052		azo2052	2251818	2254355	+	DNA mismatch repair protein	Region start changed from 2251738 to 2251819 (-81 bases)	gene	gene2093	http://www.ncbi.nlm.nih.gov/gene/?term=azo2052
azo2053	azo2053	speE1	speE1	2254352	2255107	+	putative spermidine synthase	Spermidine synthase (Putrescine aminopropyltransferase)%2C%3B~Conserved hypothetical protein	gene	gene2094	http://www.ncbi.nlm.nih.gov/gene/?term=azo2053
azo2054	azo2054	dnaQ	dnaQ	2255112	2255831	-	DNA-directed DNA polymerase	DNA polymerase III epsilon chain. DNA POLYMERASE III IS A COMPLEX MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THE EPSILON SUBUNIT CONTAIN THE EDITING FUNCTION AND IS A PROOFREADING 3-5 EXONUCLEASE (BY SIMILARITY). InterPro: Exonuclease. TIGRFAM: dnaq: DNA polymerase III epsilon chain.%3B~High confidence in function and specificity	gene	gene2095	http://www.ncbi.nlm.nih.gov/gene/?term=azo2054
azo2055	azo2055	rnhA2	rnhA2	2255849	2256307	-	Ribonuclease H.	Ribonuclease H (RNase H). This enzyme is an endonuclease that degrades the RNA of RNA-DNA hybrids specifically (By similarity).%3B~High confidence in function and specificity	gene	gene2096	http://www.ncbi.nlm.nih.gov/gene/?term=azo2055
azo2056	azo2056		azo2056	2256308	2257072	-	conserved hypothetical protein	Similar to TREMBL:Q82XV9 (41%25 identity%2C generic methyl-transferase)%3B TREMBL:Q7NYL9 (45%25 identity).	gene	gene2097	http://www.ncbi.nlm.nih.gov/gene/?term=azo2056
azo2057	azo2057	gloB2	gloB2	2257071	2257832	+	probable hydroxyacylglutathione hydrolase	Probable hydroxyacylglutathione hydrolase (EC 3.1.2.6) (Glyoxalase II) (Glx II). Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid.Similarity to bacterial stress protein TerD. 49%25 identity and 64%25 similarity to similar product from Nitrosomonas europaea ATCC InterPro: Metallo-beta-lactamase superfamily CoA_E_activ: CoA-substrate-specific enz%3B~Family membership	gene	gene2098	http://www.ncbi.nlm.nih.gov/gene/?term=azo2057
azo2058	azo2058	ccdB	ccdB	2257836	2258222	-	probable response regulator	Probable response regulator%2C%3B~Specificity unclear	gene	gene2099	http://www.ncbi.nlm.nih.gov/gene/?term=azo2058
azo2059	azo2059	wspR1	wspR1	2258225	2259202	-	probable REC/GGDEF-domain containing protein	Probable REC/GGDEF-domain containing protein%2C%3B~Function unclear	gene	gene2100	http://www.ncbi.nlm.nih.gov/gene/?term=azo2059
azo2060	azo2060		azo2060	2259430	2260878	+	membrane-bound lytic murein transglycosylase D	Region start changed from 2259236 to 2259431 (-195 bases)	gene	gene2101	http://www.ncbi.nlm.nih.gov/gene/?term=azo2060
azo2061	azo2061	dppF	dppF	2260891	2262891	-	probable ABC transporter%2C ATP-binding protein	Hypothetical ABC transporter ATP-binding protein yliA. PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM YLIABCD. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. TREMBL:Q82S74: 52%25 identity%2C 64%25 similarity. InterPro: IPR003593%3B AAA_ATPase. No signal peptide No transmembrane helices. IPR003439%3B ABC_transporter. IPR010066%3B Oligo_HPY. Pfam:PF00005%3B ABC_tran%3B 2. ProDom: PD000006%3B ABC_transporter%3B 1. SMART:SM00382%3B AAA%3B 2. TIGRFAMs TIGR01727%3B oligo_HPY mobB: molybdopterin-guanine dinucleotid%3B~High confidence in function and specificity	gene	gene2102	http://www.ncbi.nlm.nih.gov/gene/?term=azo2061
azo2062	azo2062		azo2062	2262996	2263481	-	conserved hypothetical peptidyl-prolyl cis-trans isomerase	Conserved hypothetical peptidyl-prolyl cis-trans isomerase. Homology to slyD of E. coli of 41%25 (sprot|SLYD_ECOLI) but around 30 aa at the C-terminus are missing. Peptidylprolyl isomerases accelerate protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) (IPR001179). Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase. no signal peptide. no TMHs%3B~Family membership	gene	gene2103	http://www.ncbi.nlm.nih.gov/gene/?term=azo2062
azo2063	azo2063	bcp1	bcp1	2263441	2263950	-	putative bacterioferritin comigratory protein	Putative bacterioferritin comigratory protein. Homology to bcp of E. coli of 37%25 (srot:BCP_ECOLI) Interpro: Alkyl hydroperoxid reductase/ Thiol specific antioxidant / Mal Alergern (IPR000866) Pfam: AhpcC/TSA family no signal peptide no TMH%3B~Family membership	gene	gene2104	http://www.ncbi.nlm.nih.gov/gene/?term=azo2063
azo2064	azo2064	lexA	lexA	2264217	2264825	+	repressor LexA	Regulator for SOS regulon%2C%3B~High confidence in function and specificity	gene	gene2105	http://www.ncbi.nlm.nih.gov/gene/?term=azo2064
azo2065	azo2065		azo2065	2264839	2265489	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 4 TMHs	gene	gene2106	http://www.ncbi.nlm.nih.gov/gene/?term=azo2065
azo2066	azo2066	norM	norM	2265492	2266883	+	multidrug resistance protein	The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus%2C a putative ethionine resistance protein of Saccharomyces cerevisiae%2Cand the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. Functions as a Na(+)/drug antiporter. These proteins have 12 probable TMS%2CTREMBL:Q7NXN3 (35%25 identity)%3B SWISSPROT:Q9K015 (32%25 identity). Pfam (UPF0013): Uncharacterized membrane protein family. TIGRFAM (TIGR00797): matE. TMHMM reporting 11 transmembrane helices. TC (2.A.66.1.): The Multi Antimicrobial Extrusion (MATE) Family.%3B~High confidence in function and specificity	gene	gene2107	http://www.ncbi.nlm.nih.gov/gene/?term=azo2066
azo2067	azo2067		azo2067	2266889	2267239	-	arsenate reductase	Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier). REDUCTION OF ARSENATE [AS(V)] TO ARSENITE [AS(III)]. THIS PROTEIN EXPANDS THE SUBSTRATE SPECIFICITY OF ARSAB PUMP WHICH CAN EXTRUDE ARSENITE AND ANTIMONITE TO ALLOW FOR ARSENATE PUMPING AND RESISTANCE. arsC: arsenate reductase%3B~High confidence in function and specificity	gene	gene2108	http://www.ncbi.nlm.nih.gov/gene/?term=azo2067
azo2068	azo2068		azo2068	2267239	2269050	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc2890 of R. solanacearum of 53%25 (trembl|Q8XVE1). InterPro: PDZ domain (also known as DHR or GLGF)(IPR001478). Pfam: PDZ domain (also known as DHR or GLGF)%3B M61 glycyl aminopeptidase PDZ domains are found in diverse signaling proteins in bacteria%2C yeasts%2C plants%2C insects and vertebrates. They may function in targeting signalling molecules to sub-membranous sites. Some PDZs have been shown to bind C-terminal polypeptides%3B others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Glycyl aminopeptidase is an unusual peptidase in that it has a preference for substrates with an N-terminal glycine or alanine. no signal peptide. no TMHs.%3B~Family membership	gene	gene2109	http://www.ncbi.nlm.nih.gov/gene/?term=azo2068
azo2069	azo2069		azo2069	2269613	2271997	-	ATP-dependent protease La	Region start changed from 2272064 to 2271998 (-66 bases)	gene	gene2113	http://www.ncbi.nlm.nih.gov/gene/?term=azo2069
azo2070	azo2070	clpX	clpX	2272107	2273375	-	ATP-dependent Clp protease ATP-binding subunit	ATP-dependent Clp protease ATP-binding subunit clpX. ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP (By similarity). InterPro: ATP-dependent Clp protease ATP-binding subunit ClpX%3B~High confidence in function and specificity	gene	gene2114	http://www.ncbi.nlm.nih.gov/gene/?term=azo2070
azo2071	azo2071	clpP	clpP	2273393	2274031	-	Endopeptidase Clp	clpP%2C lopP: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) . Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). InterPro: Clp protease The endopeptidase Clp (EC 3.4.21.92) from Escherichia coli cleaves peptides in various proteins in a process that requires ATP hydrolysis. Clp is a dimeric protein which consists of a proteolytic subunit (gene clpP) and either of two related ATP-binding regulatory subunits (genes clpA and clpX). ClpP is a serine protease which has a chymotrypsin-like activity. Its catalytic activity seems to be provided by a charge relay system%3B~Conserved hypothetical protein	gene	gene2115	http://www.ncbi.nlm.nih.gov/gene/?term=azo2071
azo2072	azo2072	tig	tig	2274050	2275363	-	trigger factor	Trigger factor (TF). Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation (By similarity). Pfam: In the E. coli cytosol%2C a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF)%2C and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains%2C an N-terminal domain which mediates association with the large ribosomal subunit%2C a central substrate binding and PPIase domain with homology to FKBP proteins%2Cand a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel%2C together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains. This family represents the N-terminal region of the protein. efp: translation elongation factor P%3B~Family membership	gene	gene2116	http://www.ncbi.nlm.nih.gov/gene/?term=azo2072
azo2073	azo2073	prkA	prkA	2275699	2277621	+	PrkA protein	Putative serine protein kinase. Homology to prkA of Bacillus subtilis of 32%25 (gnl|keqq|bsu:BG10804 ). Pfam: PrkA serine kinase. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases. Note that many family members are hypothetical. Interpro: IPR010650 PrkA serine kinase. No signal peptide. No TMHs.%2C%3B~Family membership	gene	gene2117	http://www.ncbi.nlm.nih.gov/gene/?term=azo2073
azo2074	azo2074	yeaH	yeaH	2277682	2278950	+	conserved hypothetical protein	Conserved hypothetical protein%2C[yeaH]54%25 identical (71%25 similarity )to SwissProt%3BP59349. Has PF04285(IPR006698)%2C Protein of unknown function (DUF444)%3BBacterial protein of unknown function. One family member (Q97LI1) is predicted to contain a von Willebrand factor (vWF) type A domain (Smart:VWA). No Signal peptide or TMH present.	gene	gene2118	http://www.ncbi.nlm.nih.gov/gene/?term=azo2074
azo2075	azo2075	ycgB	ycgB	2278947	2280482	+	putative cytoplasmic protein	Putative cytoplasmic protein[ycgB]%2C67%25 identical (79%25 similarity) SwissProt%3BP29013. TrEMBL%3BQ8XDL3(67%25 identical)TrEMBL%3BQ8ZP16. Has PF04293%2C SpoVR like protein%3BIPR007390%3B Family member P37875 is Bacillus subtilis stage V sporulation protein R%2Cwhich is involved in spore cortex formation. Little is known about cortex biosynthesis%2C except that it depends on several sigma E controlled genes%2C including spoVR. No Signal peptide or TMH present.%3B~Family membership	gene	gene2119	http://www.ncbi.nlm.nih.gov/gene/?term=azo2075
azo2076	azo2076		azo2076	2280524	2282053	+	conserved hypothetical protein	38%25 UPF0031.IPR004443%3B YjeF_Nterm. Pfam:PF01256%3B Carb_kinase%3B 1.PF03853%3B YjeF_N%3B 1. TIGRFAMs:TIGR00196%3B yjeF_cterm%3B 1.TIGR00197%3B yjeF_nterm%3B 1.%3B~Specificity unclear	gene	gene2120	http://www.ncbi.nlm.nih.gov/gene/?term=azo2076
azo2077	azo2077		azo2077	2282131	2283384	+	HD-domain containing protein	HD-domain containing protein%2C%3B~Conserved hypothetical protein	gene	gene2121	http://www.ncbi.nlm.nih.gov/gene/?term=azo2077
azo2078	azo2078		azo2078	2283461	2284315	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA0239 pf P. aeruginosa of 41%25. InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transport. Pfam: Integral membrane protein DUF6. 10 TMHs. no signal peptide%3B~Conserved hypothetical protein	gene	gene2122	http://www.ncbi.nlm.nih.gov/gene/?term=azo2078
azo2079	azo2079	nadC	nadC	2284399	2285247	+	Nicotinate-nucleotide diphosphorylase (carboxylating)	Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase). TIGRFAM: nadC: nicotinate-nucleotide pyrophosphorylase%3B~High confidence in function and specificity	gene	gene2123	http://www.ncbi.nlm.nih.gov/gene/?term=azo2079
azo2080	azo2080	thrC	thrC	2285402	2286865	-	ThrC protein	Threonine synthase is involved in threonine biosynthesis. It catalyses the conversion of O-phospho-L-homoserine and water into L-threonine and orthophosphate%2Cusing pyridoxal phosphate as a cofactor. The pyridoxal-phosphate binding site is a Lys (K) residue. The enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. Similar to trembl|Q8XZR7 (68%25)%2C to sprot|THRC_METGL (69%25) and to sprot|THRC_PSEAE (42%25). TIGRFAM: thrC%2C threonine synthase Pfam (PF00291): Pyridoxal-phosphate dependent enzyme%3B~High confidence in function and specificity	gene	gene2124	http://www.ncbi.nlm.nih.gov/gene/?term=azo2080
azo2081	azo2081	hom	hom	2287025	2288332	-	Hom protein	Homoserine dehydrogenase catalyzes NAD-dependent reduction of aspartate beta-semialdehyde into homoserine. This reaction is the third step in a pathway leading from aspartate to homoserine. Similar to TREMBL:Q9RAM9 (77%25) and to pir|DEPSHA(PIR (Georgetown University) (56%25). Pfam: Homoserine dehydrogenase%3B~High confidence in function and specificity	gene	gene2125	http://www.ncbi.nlm.nih.gov/gene/?term=azo2081
azo2082	azo2082	yfbQ	yfbQ	2288377	2289705	-	probable aspartate aminotransferase	Aspartate aminotransferase is important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants%2C it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. The enzyme catalyses the reaction: L-aspartate + 2-oxoglutarate %3D oxaloacetate + L-glutamate Similar to trembl|Q8XZR9 (72%25)%2Cto trembl|Q9RAN0 (62%25) and to sprot|YFBQ_ECOLI (57%25). Pfam (PF00155): Aminotransferases class-I%3B~Specificity unclear	gene	gene2126	http://www.ncbi.nlm.nih.gov/gene/?term=azo2082
azo2083	azo2083		azo2083	2289870	2290250	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS02847 of R.solanacearum of 49%25 (trembl:Q8XZS0). Has PF04635%2CProtein of unknown function%2C DUF598%3BIPR006729%3B This family contains several uncharacterised proteins. No signal peptide or TMH present.	gene	gene2127	http://www.ncbi.nlm.nih.gov/gene/?term=azo2083
azo2084	azo2084		azo2084	2290256	2291482	-	putative membrane transport protein	Member of the Major Facilitator Superfamily (MFS). MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Hypothetical transport protein yjjL. InterPro: General substrate transporters 2A0104: phosphoglycerate transporter%3B~Function unclear	gene	gene2128	http://www.ncbi.nlm.nih.gov/gene/?term=azo2084
azo2085	azo2085	xanB	xanB	2291561	2293009	-	probable xanthan biosynthesis protein XanB	Probable xanthan biosynthesis protein XanB. Homology to xanB of X. campestris of 60%25 (sprot|XANB_XANCP(SRS)) Xanthan biosynthesis protein XanB is a multifunctional enzyme including Mannose-6-phosphate isomerase (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) (Phosphohexomutase)and Mannose-1-phosphate guanylyl transferase (GDP) (EC 2.7.7.22) (GDP-mannose pyrophosphorylase) (GMP). InterPro: ADP-glucose pyrophosphorylase (IPR005835)%3B Mannose-6-phosphate isomerase type II (IPR001538) Pfam: Nucleotidyl transferase%2C Mannose-6-phosphate isomerase no signal peptide no TMHs%3B~Family membership	gene	gene2129	http://www.ncbi.nlm.nih.gov/gene/?term=azo2085
azo2086	azo2086		azo2086	2293152	2293907	-	putative transcriptional activator protein	Putative transcriptional activator protein%2C%3B~Function unclear	gene	gene2130	http://www.ncbi.nlm.nih.gov/gene/?term=azo2086
azo2087	azo2087	xcmX	xcmX	2293904	2294440	-	putative Gsp-related pathway protein	In Pseudomonas putida strain GB-1%2C XcmX is involved in a novel Xcp-related system for the transport of manganese-oxidizing enzymes to the cell surface. Similar trembl|Q8KSG3 (33%25). TMHMM reporting one TMH. SignalP reporting a signal peptid.%3B~Function unclear	gene	gene2131	http://www.ncbi.nlm.nih.gov/gene/?term=azo2087
azo2088	azo2088		azo2088	2294427	2294819	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to pp3476 of P. putida of 54%25 (tremble:Q88H85). no domains predicted. TMH in signal peptide. Has Signal Peptide.%3B~Conserved hypothetical protein	gene	gene2132	http://www.ncbi.nlm.nih.gov/gene/?term=azo2088
azo2089	azo2089	gspG1	gspG1	2294825	2295301	-	general secretion pathway protein G	General secretion pathway protein G%2C%3B~Specificity unclear	gene	gene2133	http://www.ncbi.nlm.nih.gov/gene/?term=azo2089
azo2090	azo2090	gspD2	gspD2	2295298	2297325	-	general secretion pathway protein D	Protein D is involved in the type II general secretion pathway within Gram-negative bacteria%2C a signal sequence-dependent process responsible for protein export. The most probable location of protein D is the outer membrane. This suggests that protein D constitutes the apparatus of the accessory mechanism%2C and is thus involved in transporting exoproteins from the periplasm%2C across the outer membrane%2C to the extracellular environment. Similar to trembl|Q8XTG8 (39%25). Pfam (PF00263): General (type II) secretion pathway (GSP) D protein Pfam (PF07660): Secretin and TonB N terminus short domain Pfam (PF03958): Bacterial type II/III secretion system short domain SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene2134	http://www.ncbi.nlm.nih.gov/gene/?term=azo2090
azo2091	azo2091		azo2091	2297322	2297813	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rs02976 of R. solanacearum of 35%25 (trembl|Q8XTG7(SRS)). No domains predicted. Signal peptide present. no TMHs%3B~Conserved hypothetical protein	gene	gene2135	http://www.ncbi.nlm.nih.gov/gene/?term=azo2091
azo2092	azo2092		azo2092	2297810	2298373	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA1234 of Azoarcus sp. EbN1 of 38%25 (gnl|keqq|eba:ebA1234(KEGG)). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene2136	http://www.ncbi.nlm.nih.gov/gene/?term=azo2092
azo2093	azo2093		azo2093	2298370	2298918	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA1229 of Azoarcus sp. EbN1 of 37%25 (gnl|keqq|eba:ebA1229(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene2137	http://www.ncbi.nlm.nih.gov/gene/?term=azo2093
azo2094	azo2094		azo2094	2298915	2299715	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebD34 of Azoarcus sp. EbN1 of 33%25 (gnl|keqq|eba:ebD34(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene2138	http://www.ncbi.nlm.nih.gov/gene/?term=azo2094
azo2095	azo2095	gspE2	gspE2	2299696	2301372	-	general secretion pathway protein E	General secretion pathway protein E (Type II traffic warden ATPase) INVOLVED IN A GENERAL SECRETION PATHWAY (GSP) FOR THE EXPORT OF PROTEINS. Similar to sprot|PILF_NEIGO (33%25) and trembl|Q82U87 (54%25). InterPro (PF00437): Bacterial type II secretion system protein E InterPro (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear	gene	gene2139	http://www.ncbi.nlm.nih.gov/gene/?term=azo2095
azo2096	azo2096	gspF2	gspF2	2301369	2302541	-	general secretion pathway protein F	General secretion pathway protein F%2Csimilar trembl|Q88HD6 (39%25). The general (type II) secretion pathway (GSP) within Gram-negative bacteria is a signal sequence-dependent process responsible for protein export. The process has two stages: exoproteins are first translocated across the inner membrane by the general signal-dependent export pathway (GEP)%2C and then across the outer membrane by a species-specific accessory mechanism. InterPro (IPR001992): Bacterial type II secretion system protein. InterPro (IPR003004): Bacterial general secretion pathway protein F Pfam (PF00482): Bacterial general secretion pathway protein F TMHMM reporting five TMH.%3B~Specificity unclear	gene	gene2140	http://www.ncbi.nlm.nih.gov/gene/?term=azo2096
azo2097	azo2097	gspG2	gspG2	2302565	2303020	-	general secretion pathway protein G	General secretion pathway GSPG-related transmembrane protein%2C%3B~Specificity unclear	gene	gene2141	http://www.ncbi.nlm.nih.gov/gene/?term=azo2097
azo2098	azo2098	slt	slt	2303193	2303888	+	soluble lytic murein transglycosylase precursor	Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) (Slt70). Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity). flhB_rel: FlhB domain protein%3B~Family membership	gene	gene2142	http://www.ncbi.nlm.nih.gov/gene/?term=azo2098
azo2099	azo2099		azo2099	2303995	2305512	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to xac2776 of X. axonopodis of 50%25 (trembl|Q8PIW9). Pfam: DUF839 This family consists of several bacterial proteins of unknown function. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2143	http://www.ncbi.nlm.nih.gov/gene/?term=azo2099
azo2100	azo2100		azo2100	2305593	2306900	-	Beta-alanine--pyruvate transaminase	Omega-amino acid--pyruvate aminotransferase (Omega-APT) (Beta-alanine--pyruvate aminotransferase). Catalyzes transamination between a variety of omega- amino acids%2Cmono and diamines%2C and pyruvate%2C by similarity. InterPro: Aminotransferase class-III pyridoxal-phosphate TIGRFAM: bioA: adenosylmethionine-8-amino-7-oxononanoate aminotransferase%3B~High confidence in function and specificity	gene	gene2144	http://www.ncbi.nlm.nih.gov/gene/?term=azo2100
azo2101	azo2101		azo2101	2307012	2307671	-	hypothetical membrane protein	Hypothetical membrane protein. No homology with hits in the database. No domains predicted. Signal peptide present. TMHMM2 reporting 1 TMH present.	gene	gene2145	http://www.ncbi.nlm.nih.gov/gene/?term=azo2101
azo2102	azo2102	dksA2	dksA2	2308537	2308899	+	DksA2 protein	DnaK suppressor protein%2C%3B~High confidence in function and specificity	gene	gene2149	http://www.ncbi.nlm.nih.gov/gene/?term=azo2102
azo2103	azo2103	pnp	pnp	2308958	2311057	-	polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase). Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3 to 5 direction. Involved in the RNA degradosome a multi-enzyme complex important in RNA processing and messenger RNA degradation.%3B~High confidence in function and specificity	gene	gene2150	http://www.ncbi.nlm.nih.gov/gene/?term=azo2103
azo2104	azo2104	rpsO	rpsO	2311255	2311524	-	30S ribosomal protein S15	30S ribosomal protein S15. THIS PROTEIN IS ONE OF THE 16S RIBOSOMAL RNA BINDING PROTEINS.%3B~High confidence in function and specificity	gene	gene2151	http://www.ncbi.nlm.nih.gov/gene/?term=azo2104
azo2105	azo2105	truB	truB	2311618	2312520	-	tRNA pseudouridine 55 synthase	tRNA pseudouridine synthase B (EC 4.2.1.70) (Psi55 synthase) (Pseudouridylate synthase) (Uracil hydrolyase). TruB: tRNA pseudouridine synthase B%3B~High confidence in function and specificity	gene	gene2152	http://www.ncbi.nlm.nih.gov/gene/?term=azo2105
azo2106	azo2106		azo2106	2312537	2312917	-	RbfA protein	Ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5terminal helix region of 16S rRNA.%3B~High confidence in function and specificity	gene	gene2153	http://www.ncbi.nlm.nih.gov/gene/?term=azo2106
azo2107	azo2107	infB	infB	2312921	2315743	-	translation initiation factor IF-2	Translation initiation factor IF-2. One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.%3B~Family membership	gene	gene2154	http://www.ncbi.nlm.nih.gov/gene/?term=azo2107
azo2108	azo2108	nusA	nusA	2315757	2317232	-	putative N utilization substance protein A	Transcription elongation protein NusA (N utilization substance protein A) (L factor). NUSA PARTICIPATES IN BOTH THE TERMINATION AND ANTITERMINATION OF TRANSCRIPTION. NUSA BINDS DIRECTLY TO THE CORE ENZYME OF THE DNA-DEPENDENT RNA POLYMERASE. NUSA ALSO INTERACTS WITH LAMBDA N PROTEIN RNA RHO FACTOR AND PERHAPS NUSB. BINDS RNA. Belongs to the nusA family 50%25 Similar to the transcription elongation protein NusA%2C from E.coli. NUSA_ECOLI/ P03003 TREMBL:Q7W9A6 InterPro: S1 RNA binding domain IPR004087 KH_dom. IPR009019 KH_prok. IPR008994 Nucleic_acid_OB. PF00575 S1%3B 1. SM00278 HhH1%3B 3 SM00322 KH%3B 2 SM00316 S1%3B 1 TIGR01953%3B NusA%3B 1. TIGR01952 nusA_arch%3B 1 TIG01954 nusA_Cterm_rpt%3B 2 taut: 4-oxalocrotonate tautomerase%3B~High confidence in function and specificity	gene	gene2155	http://www.ncbi.nlm.nih.gov/gene/?term=azo2108
azo2109	azo2109		azo2109	2317260	2317694	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to NMB1641 of N.meningitidis of 53%25 (nme:NMB1641(KEGG)). Has PF02576%2CUncharacterised BCR%2C YhbC family COG0779%3BThis entry describes proteins of unknown function. InterPro%3BIPR003728. No signal peptide or TMH reported present.	gene	gene2156	http://www.ncbi.nlm.nih.gov/gene/?term=azo2109
azo2110	azo2110		azo2110	2317918	2318988	-	pseudouridylate synthase	Conserved hypothetical protein%3B~Family membership	gene	gene2157	http://www.ncbi.nlm.nih.gov/gene/?term=azo2110
azo2111	azo2111	scpB	scpB	2318924	2319532	-	putative segregation and condensation protein B	Putative segregation and condensation protein B%2C%3B~Conserved hypothetical protein	gene	gene2158	http://www.ncbi.nlm.nih.gov/gene/?term=azo2111
azo2112	azo2112		azo2112	2319510	2320340	-	conserved hypothetical protein	Hypothetical protein%2C 51%25 identity(64%25 similarity) to TrEMBL%3BQ8XWT4. Has PF02616%2C Uncharacterised ACR%2CCOG1354%3BThis entry describes proteins of unknown function. InterPro%3B IPR003768%3B~Specificity unclear	gene	gene2159	http://www.ncbi.nlm.nih.gov/gene/?term=azo2112
azo2113	azo2113		azo2113	2320366	2321025	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE1726 of N.europaea of 61%25 (trembl:Q82TY8). InterPro: IPR008915%3B Peptidase_M50. Pfam: PF02163%3B Peptidase_M50. Non-secretory protein signal peptide probability: 0.235. TMHMM predicted 4 transmembrane helices%3B~Conserved hypothetical protein	gene	gene2160	http://www.ncbi.nlm.nih.gov/gene/?term=azo2113
azo2114	azo2114		azo2114	2321072	2321704	-	conserved hypothetical protein	InterPro: Sua5/YciO/YrdC/YwlC protein family TIGR00057: Sua5/YciO/YrdC/YwlC family p%3B~High confidence in function and specificity	gene	gene2161	http://www.ncbi.nlm.nih.gov/gene/?term=azo2114
azo2115	azo2115	trpH	trpH	2321712	2322563	-	conserved hypothetical protein	TREMBL:Q7VZ25: 48%25 identity%3B 57%25 similarity SWISSPROT:TRPH_HAEIN:Protein trpH (38%25 identity). InterPro:IPR003141%3B PHP_N.PHP domain C-terminal region. The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region Pfam: PF02231%3B PHP_N%3B SMART: SM00481%3B POLIIIAc%3B thiE: thiamine-phosphate pyrophosphoryl%3B~High confidence in function and specificity	gene	gene2162	http://www.ncbi.nlm.nih.gov/gene/?term=azo2115
azo2116	azo2116		azo2116	2322571	2323473	-	probable hydrolase or acytransferase	Probable Serine hydrolase-like protein (EC 3.1.-.-). TREMBL:Q8Y0A9: 49%25 identity%2C 63%25 similarity. Pfam: abhydrolase%3B thioesterase TIGRFAM: murB: UDP-N-acetylenolpyruvoylglucosamine No transmembrane helix (predicted by TMHMM)%3B~Function unclear	gene	gene2163	http://www.ncbi.nlm.nih.gov/gene/?term=azo2116
azo2117	azo2117		azo2117	2323493	2323834	+	Hypothetical protein	Hypothetical protein. Very bad homology with hits. Has No domains%2C repeats%2C motifs or features detected.	gene	gene2164	http://www.ncbi.nlm.nih.gov/gene/?term=azo2117
azo2118	azo2118		azo2118	2323896	2324195	+	conserved hypothetical protein	Conserved hypothetical protein. Very Bad homology with hits in the database. Has SMART%3BSM00438%3BIPR000967%2CZnf_NFX1%3BThis domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C%2C where X can be any amino acid%2C and numbers in brackets indicate the number of residues. The two position can be either his or cys. This domain is found in the human transcriptional repressor NK-X1%2C a repressor of HLA-DRA transcription%3B the Drosophila shuttle craft protein%2C which plays an essential role during the late stages of embryonic neurogenesis%3B and a yeast hypothetical protein YNL023C.	gene	gene2165	http://www.ncbi.nlm.nih.gov/gene/?term=azo2118
azo2119	azo2119	pcD	pcD	2324230	2325735	+	probable piperideine-6-carboxylate dehydrogenase	probable piperideine-6-carboxylate dehydrogenase. Homology to pcd of F. lutescens of 53%25 (trembl|Q9F1U8) InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~Family membership	gene	gene2166	http://www.ncbi.nlm.nih.gov/gene/?term=azo2119
azo2120	azo2120	ylqF	ylqF	2325732	2326607	-	probable GTPase	Hypothetical protein MG442 homolog (K05_orf271). TREMBL:Q7NR72: 48%25 identity%2C 66%25 similarity InterPro%3B IPR005289%3B GTP-bindding_dom. InterPro%3B IPR002917%3B MMR_HSR1. Pfam%3B PF01926%3B MMR_HSR1%3B thiE: thiamine-phosphate pyrophosphor NO signal peptide No transmembrane helices%3B~Specificity unclear	gene	gene2167	http://www.ncbi.nlm.nih.gov/gene/?term=azo2120
azo2121	azo2121	cspA	cspA	2326914	2327123	+	cold shock-like protein	Cold shock-like protein%2C%3B~High confidence in function and specificity	gene	gene2168	http://www.ncbi.nlm.nih.gov/gene/?term=azo2121
azo2122	azo2122	deaD	deaD	2327305	2329257	+	ATP-dependent RNA helicase	Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD). HAS A HELIX-DESTABILIZING ACTIVITY. PLAYS A KEY ROLE IN OPTIMAL CELL GROWTH AT LOW TEMPERATURE AND IS REQUIRED FOR NORMAL CELL DIVISION (BY SIMILARITY).%3B~Family membership	gene	gene2169	http://www.ncbi.nlm.nih.gov/gene/?term=azo2122
azo2123	azo2123	tesA2	tesA2	2329257	2329883	+	putative acyl-CoA thioesterase I	Putative acyl-CoA thioesterase. Homology to tesA of E. coli of 32%25 (sprot|TESA_ECOLI) Hydrolyzes long chain acyl thioesters (c12-c18): 2-lysophosphatidylcholine + h(2)o %3D glycerophosphocholine + a fatty acid anion. InterPro: GDSL lipolytic enzyme (IPR001087) Pfam: Lipase/Acylhydrolase GDSL-like motif signal peptide no TMH%3B~Family membership	gene	gene2170	http://www.ncbi.nlm.nih.gov/gene/?term=azo2123
azo2124	azo2124		azo2124	2329949	2330935	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc0540 of R. solanacearum of 71%25 (trembl|Q8Y1Z7). Pfam: DUF227. no signal peptide. no TMHs	gene	gene2171	http://www.ncbi.nlm.nih.gov/gene/?term=azo2124
azo2125	azo2125		azo2125	2331002	2331898	+	conserved hypothetical protein	TREMBL:Q9HT60:67%25 identity%2C 80%25 similarity to putative hydrolase. Hypothetical protein yqjL. InterPro: Alpha/beta hydrolase fold Pfam: abhydrolase%3B thioesterase domain uppS: undecaprenyl diphosphate synthase%3B~Specificity unclear	gene	gene2172	http://www.ncbi.nlm.nih.gov/gene/?term=azo2125
azo2126	azo2126	yaeQ	yaeQ	2331887	2332435	-	putative cytoplasmic protein [yaeQ]	Putative cytoplasmic protein [yaeQ]%2C49%25 identity (64%25 similarity) to TrEMBL%3BQ79ID7. TrEMBL%3BQ8FKZ7(57%25 identity) SwissProt%3BP52100. Has PF07152%2C YaeQ protein%3BThis family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH%2C a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function. No Signal Peptide or TMH present.%3B~High confidence in function and specificity	gene	gene2173	http://www.ncbi.nlm.nih.gov/gene/?term=azo2126
azo2127	azo2127		azo2127	2332443	2333228	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA6182 Azoarcus sp. EbN1 of 55%25 (gnl|keqq|eba:ebA6182(KEGG)). No domains predicted. No signal peptide. No TMHs.	gene	gene2174	http://www.ncbi.nlm.nih.gov/gene/?term=azo2127
azo2128	azo2128		azo2128	2333487	2334902	+	GGDEF-domain containing protein	GGDEF-domain containing protein%2C%3B~Conserved hypothetical protein	gene	gene2175	http://www.ncbi.nlm.nih.gov/gene/?term=azo2128
azo2129	azo2129		azo2129	2334907	2335401	-	Hypothetical protein	Hypothetical protein%2C 32%25 identity to TrEMBL%3BQ6MXJ8. No Signal Peptide%2C features or Domains present.	gene	gene2176	http://www.ncbi.nlm.nih.gov/gene/?term=azo2129
azo2130	azo2130	fabI2	fabI2	2335612	2336391	+	probable enoyl-[acyl-carrier-protein] reductase	Catalytic activity :-acyl-[acyl-carrier protein] + nad(+) %3D trans- 2%2C3-dehydroacyl-[acyl-carrier protein] + nadh. pathway:- fatty acid biosynthesis pathway%3B second reduction step. Entry name SWISSPROT:FABI_ECOLI InterPro IPR002198%3B ADH_short. Identities %3D 108/252 (42%25) Pfam PF00106%3B adh_short%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene2177	http://www.ncbi.nlm.nih.gov/gene/?term=azo2130
azo2131	azo2131		azo2131	2336402	2336998	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03002758 of Dechloromonas aromatica of 51%25 (gi|53730017|ref|ZP_00150562.2|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene2178	http://www.ncbi.nlm.nih.gov/gene/?term=azo2131
azo2132	azo2132		azo2132	2337022	2337999	-	conserved hypothetical ATPase	Conserved hypothetical ATPase. Homology to Daro03000733 of Dechloromonas aromatica of 64%25 (gi|41725756|ref|ZP_00152514.1|(NBCI ENTREZ)). Domain structure: 101 aa - 293 aa AAA-protein. InterPro: AAA-protein (ATPases associated with various cellular activities) (IPR003959)%3B AAA ATPase superfamily (IPR003593). Pfam: ATPases associated with various cellular activities. no signal peptide. no TMHS%3B~Conserved hypothetical protein	gene	gene2179	http://www.ncbi.nlm.nih.gov/gene/?term=azo2132
azo2133	azo2133	folE	folE	2338181	2338852	+	FolE protein	GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I). folE: GTP cyclohydrolase I%3B~High confidence in function and specificity	gene	gene2180	http://www.ncbi.nlm.nih.gov/gene/?term=azo2133
azo2134	azo2134		azo2134	2338856	2339185	-	hypothetical protein	Hypothetical protein%2C has no good homology over the entire length with hits in Database. TrEMBL Q9HT58 Hypothetical protein PA5515 [PA5515] [Pseudomonas aeruginosa. No Signal Peptide or TMH being reported as present.%3B~Family membership	gene	gene2181	http://www.ncbi.nlm.nih.gov/gene/?term=azo2134
azo2135	azo2135		azo2135	2339196	2340776	-	putative phosphate permease	Probable low-affinity phosphate transporter protein.Involved in phosphate transport depending on the proton motive force. InterPro: Phosphate transporter family Similar to PitA a cation-phosphate transporter in E.coli. No signal peptide%3B~High confidence in function and specificity	gene	gene2182	http://www.ncbi.nlm.nih.gov/gene/?term=azo2135
azo2136	azo2136		azo2136	2340834	2341187	-	conserved hypothetical protein	Hypothetical protein ypjD. TREMBL:Q7W7V7: 56%25 identity%2C 65%25 similarity SPROT:YPJD_BACSU:P42979: 27%25 identity%2C 49%25 similarity This group of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in Escherichia coli. InterPro:IPR004518%3B MazG. Pfam: PF03819 No transmembrane helices (TMHMM predicted)%3B~Specificity unclear	gene	gene2183	http://www.ncbi.nlm.nih.gov/gene/?term=azo2136
azo2137	azo2137		azo2137	2341245	2342090	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to cv2345 of C. violaceum of 54%25 (trembl|Q7NVJ7). no domains predicted. no signal peptide. no TMHs.	gene	gene2184	http://www.ncbi.nlm.nih.gov/gene/?term=azo2137
azo2138	azo2138		azo2138	2342306	2342851	+	conserved hypothetical protein	Hypothetical protein PA3753. A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide%2C which%2C in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [1]%2C has been shown to form a left-handed parallel beta helix TREMBL:Q9A526: 55%25 identity%3B 75%25 similarity bacterial transferase family protein. Superfamily: ferripyochelin binding protein InterPro:IPR001451%3B Hexapep_transf.Bacterial transferase hexapeptide repeat Pfam:PF00132%3B Hexapep%3B presence of DUF99 domain. No signal peptide (Signal P) or transmembrane helices (TMHMM).%3B~Specificity unclear	gene	gene2185	http://www.ncbi.nlm.nih.gov/gene/?term=azo2138
azo2139	azo2139		azo2139	2342971	2343666	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to CV3305 of C.violaceum of 37%25 (tremble:Q7NSW4). Has PF04402%2C Protein of unknown function (DUF541)%3BIPR007497:Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes%2C and thus regulate NF-kappa-B activity. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene2186	http://www.ncbi.nlm.nih.gov/gene/?term=azo2139
azo2140	azo2140		azo2140	2343704	2344009	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebD110 of Azoarcus sp. EbN1 of 46%25 (gnl|keqq|eba:ebD110(KEGG)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene2187	http://www.ncbi.nlm.nih.gov/gene/?term=azo2140
azo2141	azo2141		azo2141	2344066	2344623	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to CV2523 of Chromobacterium violaceum of 48%25 (trembl:Q7NV23). Pfam: NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins. Signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene2188	http://www.ncbi.nlm.nih.gov/gene/?term=azo2141
azo2142	azo2142		azo2142	2344733	2345164	+	putative inosine-5'-monophosphate dehydrogenase related protein	Hypothetical protein MK0525 (OrfX). trembl|Q9V230 (Q9V230) Inosine-5'-monophosphate dehydrogenase related%3B 34%25 identity%2C 55%25 similarity. InterPro: CBS domain (IPR005857%2C IPR004840) TIGRFAM: kpsF/GutQ family TMHMM predicted absence of transmembrane helices%3B~Specificity unclear	gene	gene2189	http://www.ncbi.nlm.nih.gov/gene/?term=azo2142
azo2143	azo2143		azo2143	2345219	2345494	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV3460 of C. violaceum of 54%25 (trembl|Q7NSG6(SRS)). Pfam: Septum formation initiator DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil. no signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene2190	http://www.ncbi.nlm.nih.gov/gene/?term=azo2143
azo2144	azo2144	eno	eno	2345585	2346874	-	putative enolase	Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase).Enolase is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate. 66%25 Enolase. Pfam:PF00113%3B enolase%3B 1.PF03952%3B enolase_N%3B 1. TIGRFAMs:TIGR01060%3B eno%3B 1.%3B~High confidence in function and specificity	gene	gene2191	http://www.ncbi.nlm.nih.gov/gene/?term=azo2144
azo2145	azo2145	kdsA	kdsA	2346959	2347798	-	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2- dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS). Homology to kdsA of Pseudomonas aeruginosa of 45%25 (gi|6647573|sp|Q9ZFK4|KDSA_PSEAE(SwissProt (ExPASy))). Tigrfam: 3-deoxy-8-phosphooctulonate synthase. This HMM describes 3-deoxy-8-phosphooctulonate synthase. Alternate names include 2-dehydro-3-deoxyphosphooctonate aldolase%2C 3-deoxy-d-manno-octulosonic acid 8-phosphate and KDO-8 phosphate synthetase. It catalyzes the aldol condensation of phosphoenolpyruvate with D-arabinose 5-phosphate:%2Cphosphoenolpyruvate + D-arabinose 5-phosphate + H2O %3D 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate%2C In Gram-negative bacteria%2C this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate%2C part of the oligosaccharide core of lipopolysaccharide. Pfam: DAHP synthetase I family. No signal peptide. No TMHs.%2C%3B~High confidence in function and specificity	gene	gene2192	http://www.ncbi.nlm.nih.gov/gene/?term=azo2145
azo2146	azo2146	pyrG	pyrG	2347810	2349450	-	CTP synthase	CTP synthase (CTP synthetase) (UTP--ammonia ligase) Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (By similarity). InterPro: CTP synthase PyrG: CTP synthase%3B~High confidence in function and specificity	gene	gene2193	http://www.ncbi.nlm.nih.gov/gene/?term=azo2146
azo2147	azo2147		azo2147	2349604	2350314	+	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide present. TMHMM2 reporting 3 TMH present.	gene	gene2194	http://www.ncbi.nlm.nih.gov/gene/?term=azo2147
azo2148	azo2148	sndH	sndH	2350311	2351624	-	putative L-sorbosone dehydrogenase	L-sorbosone dehydrogenase. Converts L-sorbosone to 2-keto-l-gulonic acid (2kga). 63%25 Peptidase_M14.IPR000595%3B cNMP_binding. Signal peptide:present.%3B~High confidence in function and specificity	gene	gene2195	http://www.ncbi.nlm.nih.gov/gene/?term=azo2148
azo2149	azo2149	acsA	acsA	2351727	2353712	-	putative acetoacetyl-CoA synthase	INVOLVED IN POLY-3-HYDROXYBUTYRATE DEGRADATION. ACTIVATES ACETOACETATE TO ACETOACETYL-COA. catalytic activity :-atp + acetate + coa %3D amp + diphosphate + acetyl-coa. Entry name SWISSPROT:ACSA_ECOLI Prim. accession # P27550 Identities %3D 164/624 (26%25) InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene2196	http://www.ncbi.nlm.nih.gov/gene/?term=azo2149
azo2150	azo2150		azo2150	2353748	2354155	-	conserved hypothetical protein	Probable Hypothetical protein AQ_1494. TREMBL:Q7WIS5: 37%25 identity%3B 51%25 similarity. This family contains a wide variety of enzymes%2C principally thioesterases. This family includes 4HBT (EC: 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate%2C they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. InterPro:IPR006683%3B Thioestr_supf. Pfam:PF03061%3B 4HBT InterPro: 4-hydroxybenzoyl-CoA thioesterase family active site No transmembrane helices TIGR00051: conserved hypothetical protein%3B~Family membership	gene	gene2197	http://www.ncbi.nlm.nih.gov/gene/?term=azo2150
azo2151	azo2151	etf1	etf1	2354316	2355959	+	probable electron transfer flavoprotein-ubiquinone oxidoreductase	Probable electron transfer flavoprotein-ubiquinone oxidoreductase. Homology to etfdh of H. sapiens of 57%25 (sprot|ETFD_HUMAN) Accepts electrons and reduces ubiquinone. Pfam: FAD_binding_3%3B ETF_QO no signal peptide no TMHs	gene	gene2198	http://www.ncbi.nlm.nih.gov/gene/?term=azo2151
azo2152	azo2152		azo2152	2356040	2357077	-	hypothetical secreted protein	Hypothetical secreted protein. Homology to GSU2347 of G. sulfurreducens of 26%25 (tremblnew|AAR35721(SRS)). Has PF04338%3BProtein of unknown function%2C DUF481%3B This family includes several proteins of uncharacterised function. Signal P reporting signal peptide present. NO TMH reported to be present.	gene	gene2199	http://www.ncbi.nlm.nih.gov/gene/?term=azo2152
azo2153	azo2153		azo2153	2357201	2357677	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PP2380 of P. putida of 47%25 (trembl:Q88KB0). Has PF04314%2C Protein of unknown function (DUF461)%3BPutative membrane or periplasmic protein. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene2200	http://www.ncbi.nlm.nih.gov/gene/?term=azo2153
azo2154	azo2154		azo2154	2357725	2358195	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. 33%25 similarity to TrEMBL Q8XQF8 PROBABLE SIGNAL PEPTIDE PROTEIN [RS05314] [Ralstonia solanacearum (Pseudomonas solanacearum)]. No domains predicted. Signal P reporting signal peptide present. No TMH reported being present.%3B~Conserved hypothetical protein	gene	gene2201	http://www.ncbi.nlm.nih.gov/gene/?term=azo2154
azo2155	azo2155		azo2155	2358192	2359436	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc1270 of R. solanacearum of 44%25 (trembl|Q8XQF7(SRS)). no domains predicted .signal peptide present. no TMHs%3B~Conserved hypothetical protein	gene	gene2202	http://www.ncbi.nlm.nih.gov/gene/?term=azo2155
azo2156	azo2156		azo2156	2359411	2361702	-	probable TonB-dependent receptor	TonB-dependent outer membrane receptor involved in the first step of iron internalization and metabolism. A short conserved region so called the tonB-box is present in the sequence. This domain is involved in the interaction of the receptor with the TonB protein. Similar to a E. coli iron(III) dicitrate transport protein fecA precursor. InterPro: TonB-dependent receptor protein arcC: carbamate kinase%3B~Function unclear	gene	gene2203	http://www.ncbi.nlm.nih.gov/gene/?term=azo2156
azo2157	azo2157		azo2157	2361956	2362348	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to BB1293 of Bordetella bronchiseptica of 38%25 (trembl:Q7WMU7). No domains predicted. Signal peptide. No TMHs	gene	gene2204	http://www.ncbi.nlm.nih.gov/gene/?term=azo2157
azo2158	azo2158	purL	purL	2362426	2366367	-	phosphoribosylformylglycinamidine synthase	Phosphoribosylformylglycinamidine synthase (Phosphoribosylformylglycinamidine synthetase) (FGAM synthase) (FGAM synthetase) (Formylglycinamide ribotide amidotransferase) (FGARAT) (FGAR amidotransferase) InterPro: AIR synthase related protein%3B~High confidence in function and specificity	gene	gene2205	http://www.ncbi.nlm.nih.gov/gene/?term=azo2158
azo2159	azo2159		azo2159	2366563	2367378	+	conservd hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV3583 of C. violaceum of 30%25 (trembl|Q7NS44(SRS)). Pfam: PAP2 superfamily no signal peptide 8 TMHs%3B~Conserved hypothetical protein	gene	gene2206	http://www.ncbi.nlm.nih.gov/gene/?term=azo2159
azo2160	azo2160		azo2160	2367375	2368289	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to smc02385 of S. meliloti of 32%25 (trembl:Q92KI4). No domains predicted. Signal peptide. 6 TMHs%3B~Conserved hypothetical protein	gene	gene2207	http://www.ncbi.nlm.nih.gov/gene/?term=azo2160
azo2161	azo2161		azo2161	2368307	2369353	+	glycosyltransferase	Glycosyltransferase%2C%3B~Specificity unclear	gene	gene2208	http://www.ncbi.nlm.nih.gov/gene/?term=azo2161
azo2162	azo2162		azo2162	2369350	2370978	+	conserved hypothetical protein%2C similar to glycosyltransferases	Hypothetical protein AQ_1704.%3B~Family membership	gene	gene2209	http://www.ncbi.nlm.nih.gov/gene/?term=azo2162
azo2163	azo2163		azo2163	2370975	2371727	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Daro03001595 of Dechloromonas aromatica of 38%25 (gi|53730877|ref|ZP_00348993.1|(NBCI ENTREZ)). InterPro IPR008934%3B AcPase_VanPerase. IPR000326%3B PA_PTPase. Pfam PF01569%3B PAP2%3B 1. Number of predicted TMHs: 6 Prediction: Non-secretory protein Signal peptide probability: 0.023%3B~Conserved hypothetical protein	gene	gene2210	http://www.ncbi.nlm.nih.gov/gene/?term=azo2163
azo2164	azo2164		azo2164	2371731	2372156	-	conserved hypothetical protein	Function unclear	gene	gene2211	http://www.ncbi.nlm.nih.gov/gene/?term=azo2164
azo2165	azo2165		azo2165	2372204	2372563	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA6137 of Azoarcus sp. EbN1 of 34%25 (gnl|keqq|eba:ebA6137(KEGG)). No domains predicted. Signal peptide present. No TMHs Coiled Coil present.%3B~Conserved hypothetical protein	gene	gene2212	http://www.ncbi.nlm.nih.gov/gene/?term=azo2165
azo2166	azo2166		azo2166	2372572	2373516	-	peptidase	InterPro: Peptidase family M23/M37%3B~Specificity unclear	gene	gene2213	http://www.ncbi.nlm.nih.gov/gene/?term=azo2166
azo2167	azo2167	ppsA1	ppsA1	2373743	2376109	-	putative phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase(Pyruvatewater dikinase)(PEP synthase). Essential step in gluconeogenesis when pyruvate and lactate are used as a carbon source.Catalytic activity:atp + pyruvate + h(2)o %3D amp + phosphoenolpyruvate + phosphate. 66%25 PEP_mobile.IPR006319%3B PEP_synth.IPR000121%3BPEP_utilizers.IPR002192%3B PPDK_N_term. Pfam:PF00391%3B PEP-utilizers%3B 1.PF02896%3B PEP-utilizers_C%3B 1. PF01326%3B PPDK_N%3B 1. TIGRFAMs:TIGR01418%3B PEP_synth%3B 1.%3B~High confidence in function and specificity	gene	gene2214	http://www.ncbi.nlm.nih.gov/gene/?term=azo2167
azo2168	azo2168		azo2168	2376269	2377102	+	conserved hypothetical protein	Conserved hypothetical protein. Homolog to RSC1420 of Ralstonia solanacearum of 63%25 (trembl:Q8XZH5). Has PF03618%2C Domain of unknown function (DUF299)%3B IPR005177 %3B Family of bacterial proteins with no known function. No signal peptide. No TMHs.	gene	gene2215	http://www.ncbi.nlm.nih.gov/gene/?term=azo2168
azo2169	azo2169		azo2169	2377163	2378341	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to BPP2392 of B.parapertussis of 42%25 (trembl:Q7W7W7). Signal P reporting signal peptide present. No TMH present. No domains predicted%3B~Family membership	gene	gene2216	http://www.ncbi.nlm.nih.gov/gene/?term=azo2169
azo2170	azo2170	msrB	msrB	2378368	2378784	+	conserved hypothetical peptide methionine sulfoxide reductase	Conserved hypothetical peptide methionine sulfoxide reductase. Homology to msrB of S. elongatus of 64%25. Peptide methionine sulphoxide reductase reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide%2C Met(O)%2C to methionine. InterPro: Domain of unknown function DUF25 (IPR002579). Pfam: Domain of unknown function DUF25. Tigrfam: TIGR00357: PilB-related protein. no TMHs%3B~Family membership	gene	gene2217	http://www.ncbi.nlm.nih.gov/gene/?term=azo2170
azo2171	azo2171	trg	trg	2378890	2380518	+	putative ribose and galactose chemoreceptor protein	The Trg transducer mediates chemotactic response to galactose and ribose by interacting%2C respectively%2C with sugar-occupied galactose- and ribose-binding proteins. Adaptation is linked to methylation of specific glutamyl residues of the Trg protein. Similar to sprot|MCP3_ECOLI (27%25)and to TREMBL:Q88AC6. InterPro (IPR004089): Bacterial chemotaxis sensory transducer InterPro (IPR003660): HAMP InterPro (IPR004090): Methyl-accepting chemotaxis protein Pfam (PF00672): HAMP Pfam (PF00015): Methyl-accepting chemotaxis protein (MCP) signaling domain Pfam (PF05227): CHASE3 domain TMHMM reporting two TMH.%3B~Specificity unclear	gene	gene2218	http://www.ncbi.nlm.nih.gov/gene/?term=azo2171
azo2172	azo2172	thlA	thlA	2380606	2381787	-	probable acetyl-coa acetyltransferase (acetoacetyl-coa thiolase).	Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase):- catalytic activity:-2 acetyl-coa %3D coa + acetoacetyl-coa. Entry name SWISSPROT:THLA_CLOAB Prim. accession # P45359 Identities %3D 205/392 (52%25) InterPro IPR002155%3B Thiolase. Pfam PF00108%3B thiolase%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.022 Number of predicted TMHs: 0%3B~Family membership	gene	gene2219	http://www.ncbi.nlm.nih.gov/gene/?term=azo2172
azo2173	azo2173	cobD1	cobD1	2381808	2382734	-	cobalamin biosynthesis transmembrane protein	Cobalamin biosynthesis protein cobD. Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group (By similarity). TMHMM reporting 4 transmembrane helices TIGRFAM: cbiB: cobalamin biosynthesis protein Cbi%3B~High confidence in function and specificity	gene	gene2220	http://www.ncbi.nlm.nih.gov/gene/?term=azo2173
azo2174	azo2174		azo2174	2382839	2383312	-	conserved hypothetical protein	Region start changed from 2383430 to 2383313 (-117 bases)	gene	gene2221	http://www.ncbi.nlm.nih.gov/gene/?term=azo2174
azo2175	azo2175	pilY1A	pilY1A	2383583	2386957	-	putative type 4 pilus biogenesis protein	PilY1 is a large protein with C-terminal homology to the PilC2 protein of Neisseria gonorrhoeae%2C thought to be a fimbrial tip-associated adhesin%2C and which%2C like PilY1%2C is involved in fimbrial assembly. Similar to trembl|Q8XW00 (31%25). Pfam (PF01839): FG-GAP repeat SignalP reporting Signal peptide%3B~Function unclear	gene	gene2222	http://www.ncbi.nlm.nih.gov/gene/?term=azo2175
azo2176	azo2176		azo2176	2386969	2387559	-	hypothetical secreted protein	Hypothetical secreted protein. Homology to RS00045 of R. solanacearum of 25%25 (trembl|Q8XVZ9(SRS)) No domains predicted Sinal P reporting singal peptide present. No TMH being reported.	gene	gene2223	http://www.ncbi.nlm.nih.gov/gene/?term=azo2176
azo2177	azo2177	pilW	pilW	2387559	2388581	-	putative type 4 pilus biogenesis protein	In Pseudomonas aeruginosa%2C the PilW and PilX proteins are membrane located%2C possess the hydrophobic N-terminus characteristic of prepilin-like proteins%2C and appear to belong to the GspJ and GspK group of proteins that are required for protein secretion in a wide range of Gram-negative bacteria. These findings increase the similarities between the fimbrial biogenesis and the Gsp-based protein-secretion supersystems. Similar to trembl|Q8XVZ8 (29%25). Smart (SM00438): Repressor of transcription TMHMM reporting one TMH. SignalP reporting Signal peptide.%3B~Function unclear	gene	gene2224	http://www.ncbi.nlm.nih.gov/gene/?term=azo2177
azo2178	azo2178		azo2178	2388592	2389143	-	probABLE TYPE 4 FIMBRIAL BIOGENESIS RELATEDTRANSMEMBRANE PROTEIN	Family membership	gene	gene2225	http://www.ncbi.nlm.nih.gov/gene/?term=azo2178
azo2179	azo2179		azo2179	2389188	2389595	-	conserved hypothetical protein	Probable type-4 fimbrial pilin related signal peptide protein%2C32%25 Identity to TrEMBL%3BQ8XVZ6%2CQ7NTE6. Has Signal peptide. Has COG4970%2C FimT%2C Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	gene	gene2226	http://www.ncbi.nlm.nih.gov/gene/?term=azo2179
azo2180	azo2180		azo2180	2389690	2390103	-	conserved hypothetical prepilin like protein	In P. aeruginosa PilE is probable involved in pilus biogenesis and in twitching motility. Similarity to PilE of Ralstonia eutropha (33%25) TMHMM reporting one TMhelix. Pfam: pilin domain%3B~Conserved hypothetical protein	gene	gene2227	http://www.ncbi.nlm.nih.gov/gene/?term=azo2180
azo2181	azo2181		azo2181	2390211	2390861	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to pa4048 of P. aeruginosa of 33%25 (trembl|Q9HWY0). no domains. signal peptide. no TMHs.%3B~Conserved hypothetical protein	gene	gene2228	http://www.ncbi.nlm.nih.gov/gene/?term=azo2181
azo2182	azo2182		azo2182	2390978	2391172	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA5103 of Azoarcus sp. EbN1 of 57%25 (gnl|keqq|eba:ebA5103(KEGG)). no domains predicted. no signal peptide. no TMHs.	gene	gene2229	http://www.ncbi.nlm.nih.gov/gene/?term=azo2182
azo2183	azo2183		azo2183	2391193	2391678	-	conserved hypothetical protein	Conserved hypothetical protein%2C 57%25 identity(77%25 Similarity) to SwissProt%3BQ8XWC5. SwissProt%3BQ82SQ9(60%25 identity) Has (IPR007551)PF04461%2C Protein of unknown function (DUF520)%3BFamily of uncharacterised proteins. Signal Peptide or TMH not present.%3B~Specificity unclear	gene	gene2230	http://www.ncbi.nlm.nih.gov/gene/?term=azo2183
azo2184	azo2184	yaiE	yaiE	2391697	2392020	-	conserved hypothetical protein	Hypothetical protein%2C64%25 identical to TrEMBL%3BQ8XWC2 Has PF06865%2C Protein of unknown function (DUF1255)%3BIPR009664 :This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown. No Signal peptide or TMH not present.%3B~High confidence in function and specificity	gene	gene2231	http://www.ncbi.nlm.nih.gov/gene/?term=azo2184
azo2185	azo2185		azo2185	2392036	2392263	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NMA1807 of Neisseria meningitidis of 41%25 (trembl|Q9JTE8(SRS)). No domains predicted. TMHMM reporting 2 TMH present. NO Signal Peptide being reported present.%3B~Conserved hypothetical protein	gene	gene2232	http://www.ncbi.nlm.nih.gov/gene/?term=azo2185
azo2186	azo2186	argG	argG	2392276	2393505	-	ArgG protein	Argininosuccinate synthase%2C argG. Similar to SWISSPROT:ASSY_NITEU (81%25). Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate%2C AMP and pyrophosphate. InterPro (PF00764): Argininosuccinate synthase InterPro (TIGR00032): Argininosuccinate synthase%3B~High confidence in function and specificity	gene	gene2233	http://www.ncbi.nlm.nih.gov/gene/?term=azo2186
azo2187	azo2187	argF	argF	2393568	2394503	-	ArgF protein	Ornithine carbamoyltransferase%2C argF. Similar to sprot|OTC_NITEU (76%25) and to sprot|OTC_RALSO (71%25). The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine. This reaction is part of the arginine biosynthetic pathway. TIGRFAM: ornithine carbamoyltransferase%3B~High confidence in function and specificity	gene	gene2234	http://www.ncbi.nlm.nih.gov/gene/?term=azo2187
azo2188	azo2188	argD	argD	2394503	2395693	-	acetylornithine transaminase	Probable acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT). Homology to argD of Anavaena sp. of 46%25 (sprot|ARGD_ANASP). Involved in both the arginine and lysine biosynthetic pathways. Tigrfam: argD: acetylornithine and succinylornithine aminotransferases Pfam: Aminotransferase class-III%3B~High confidence in function and specificity	gene	gene2235	http://www.ncbi.nlm.nih.gov/gene/?term=azo2188
azo2189	azo2189		azo2189	2395933	2396217	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to bpp2544 of P. pararpertussis of 51%25 (TREMBL:Q7W7H5). no signal peptide. no TMHs. No domains predicted.	gene	gene2236	http://www.ncbi.nlm.nih.gov/gene/?term=azo2189
azo2190	azo2190	rpsT	rpsT	2396348	2396614	-	30S ribosomal protein S20	30S ribosomal protein S20. Binds directly to 16S ribosomal RNA.%3B~Family membership	gene	gene2237	http://www.ncbi.nlm.nih.gov/gene/?term=azo2190
azo2191	azo2191	mviN	mviN	2396768	2398306	+	probable virulence factor	TREMBL:Q82SD5:58%25 identity%2C 69%25 similarity The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins%2C first described in Salmonella [1]%2C and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules%2C and are part of an operon essential in at least one species subcellular location:integral membrane protein (potential). similarity:belongs to the mvin family Virulence factor mviN. InterPro:IPR004268%3B MVIN_like. Pfam:PF03023%3B MVIN (Virulence factor MVIN) InterPro: Virulence factor MVIN-like TMHMM predicted 13 transmembrane helices matE: MATE efflux family protein%3B~High confidence in function and specificity	gene	gene2238	http://www.ncbi.nlm.nih.gov/gene/?term=azo2191
azo2192	azo2192		azo2192	2398320	2398643	-	Hypothetical protein	Hypothetical protein%2C has very bad homology with hits in the database. TrEMBL%3BQ762H6. Has Signal Peptide.	gene	gene2239	http://www.ncbi.nlm.nih.gov/gene/?term=azo2192
azo2193	azo2193		azo2193	2398921	2400192	+	probable O-acetylhomoserine aminocarboxypropyltransferase	Probable O-acetylhomoserine aminocarboxypropyltransferase. Homology to cysD of A. nidulans of 51%25 (sprot|CYSD_EMENI). Transforms O-acetylhomoserine into homocysteine. Pfam: Cys/Met metabolism PLP-dependent enzyme no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2240	http://www.ncbi.nlm.nih.gov/gene/?term=azo2193
azo2194	azo2194		azo2194	2400229	2403828	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rs04519 of R. solanacearum of 33%25 (trembl|Q8Y0Z7(SRS)). no domains predicted. no signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene2241	http://www.ncbi.nlm.nih.gov/gene/?term=azo2194
azo2195	azo2195		azo2195	2403971	2405179	+	probable flavoprotein	Hypothetical protein yhiN. FAD flavoproteins belong to the family of pyridine nucleotide-disulphide oxidoreductases TREMBL:Q7MBF1: 58%25 identity%2C 69%25 similarity InterPro: IPR001327%3B FAD_pyr_redox. IPR004792%3B HI0933_like. IPR000205%3B NAD_BS. IPR001100%3B Pyr_redox InterPro: HI0933-like protein Pfam:PF03486%3B HI0933_like%3B 1. TIGR00275: conserved hypothetical pro Non-secretory protein with signal peptide probability of 0.464 Absence of transmembrane helices (TMHMM predicted)%3B~Specificity unclear	gene	gene2242	http://www.ncbi.nlm.nih.gov/gene/?term=azo2195
azo2196	azo2196		azo2196	2405255	2406064	+	Metallo-phosphoesterase protein	Metallo-phosphoesterase%2C 50%25 identity(67%25 similarity) to TrEMBL%3BQ6N2S9 . TrEMBL%3BQ885N2(53%25 identity). Has PF00149%2C Calcineurin-like phosphoesterase%3BIPR004843%2CM-pesterase:This family includes a diverse range of phosphoesterases%2C including protein phosphoserine phosphatases%2C nucleotidases%2C sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD P13457 or yeast MRE11 P32829. The most conserved regions in this superfamily centre around the metal chelating residues. The metallo-phosphoesterase motif is found in a large number of proteins invoved in phosphoryation. These include serine/threonine phosphatases%2C DNA polymerase%2Cexonucleases%2C and other phosphatases. No Signal Peptide or TMH present.%3B~Specificity unclear	gene	gene2243	http://www.ncbi.nlm.nih.gov/gene/?term=azo2196
azo2197	azo2197	bcp2	bcp2	2406216	2406671	+	putative bacterioferritin comigratory protein	Putative bacterioferritin comigratory protein. Homology to bcp of E. coli of 37%25 (sprot|BCP_ECOLI) InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (IPR000866) Pfam: AhpC/TSA family no signal peptide no TMHs%3B~Family membership	gene	gene2244	http://www.ncbi.nlm.nih.gov/gene/?term=azo2197
azo2198	azo2198		azo2198	2406695	2408152	+	putative PhoH-related protein	Putative PhoH-related protein%2C%3B~Conserved hypothetical protein	gene	gene2245	http://www.ncbi.nlm.nih.gov/gene/?term=azo2198
azo2199	azo2199	aer	aer	2408503	2410050	+	probable aerotaxis receptor	Probable aerotaxis receptor protein%2C%3B~High confidence in function and specificity	gene	gene2246	http://www.ncbi.nlm.nih.gov/gene/?term=azo2199
azo2200	azo2200		azo2200	2410091	2411239	+	HD-domain containing protein	HD-domain containing protein%2C%3B~Conserved hypothetical protein	gene	gene2247	http://www.ncbi.nlm.nih.gov/gene/?term=azo2200
azo2201	azo2201		azo2201	2411332	2413230	+	putative nucleotidyltransferase	Putative nucleotidyltransferase%2C%3B~Conserved hypothetical protein	gene	gene2248	http://www.ncbi.nlm.nih.gov/gene/?term=azo2201
azo2202	azo2202		azo2202	2413227	2413871	+	DNA-directed DNA polymerase	Probable DNA polymerase III%2C epsilon subunit%2C23%25 Identity to TrEMBL%3BQ8KDK8. Has EXOIII%2CSMART%3BSM00479%3BIPR006054%2C DnaQ%3BThis family includes a variety of exonuclease proteins%2C such as ribonuclease T and the epsilon subunit of DNA polymerase III. Ribonuclease T is responsible for the end-turnover of tRNA%2Cand removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex%2C multichain enzyme responsible for most of the replicative synthesis in bacteria%2C and also exhibits 3' to 5' exonuclease activity.	gene	gene2249	http://www.ncbi.nlm.nih.gov/gene/?term=azo2202
azo2203	azo2203		azo2203	2413954	2414493	+	putative lipoprotein precusor	InterPro: NLP/P60%3B~Family membership	gene	gene2250	http://www.ncbi.nlm.nih.gov/gene/?term=azo2203
azo2204	azo2204		azo2204	2414546	2414887	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV2970 of C.violaceum of 42%25 (trembl:Q7NTT3). No domains predicted. No TMHs. No signal peptide.%3B~Function unclear	gene	gene2251	http://www.ncbi.nlm.nih.gov/gene/?term=azo2204
azo2205	azo2205	fbpA1	fbpA1	2415014	2416036	+	putative iron transport system substrate-binding protein	Iron (III)-transport system%2C substrate-binding protein FbpA. Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in ferric cations import.Iron(III)periplasmic binding protein component.%3B~High confidence in function and specificity	gene	gene2252	http://www.ncbi.nlm.nih.gov/gene/?term=azo2205
azo2206	azo2206	fbpB1	fbpB1	2416091	2417758	-	Iron (III) transport system%2C permease protein probable.	Iron(III)-transport system permease protein fbpB 2. Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in ferric cations import. Probably responsible for the translocation of the substrate across the membrane (By similarity). pts-Glc: PTS system maltose and gluco%3B~High confidence in function and specificity	gene	gene2253	http://www.ncbi.nlm.nih.gov/gene/?term=azo2206
azo2207	azo2207	fbpC1	fbpC1	2417875	2418999	+	putative iron (III) transport system%2C ATP-binding protein	Ferric cations import ATP-binding protein fbpC 2 (EC 3.6.3.30). Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in ferric cations import. Responsible for energy coupling to the transport system (By similarity). InterPro: AAA ATPase superfamily apsK: adenylylsulfate kinase%3B~Specificity unclear	gene	gene2254	http://www.ncbi.nlm.nih.gov/gene/?term=azo2207
azo2208	azo2208	aat	aat	2418999	2419706	+	probable leucyl/phenylalanyl-tRNA--protein transferase	Probable leucyl/phenylalanyl-tRNA--protein transferase. Homology to aat of E. coli of 50%25 (sprot|LFTR_ECOLI). Functions in the N-end rule pathway of protein degradation where it conjugates Leu Phe and less efficiently Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine (By similarity). InterPro: Leucyl/phenylalanyl-tRNA--protein transferase (IPR004616) Tigrfam: aat: leucyl/phenylalanyl-tRNA--protein transferase no signal peptide no TMH%3B~High confidence in function and specificity	gene	gene2255	http://www.ncbi.nlm.nih.gov/gene/?term=azo2208
azo2209	azo2209	ate	ate	2419667	2420506	+	conserved hypothetical arginyl-tRNA--protein transferase	Conserved hypothetical arginyl-tRNA--protein transferase. Homology to bp3443 of B. pertussis of 62%25 (sprot|ATE_BORPE). Functions in the N-end rule pathway of protein degradation where it conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate (Potential). no signal peptide. no TMHs%3B~Family membership	gene	gene2256	http://www.ncbi.nlm.nih.gov/gene/?term=azo2209
azo2210	azo2210	pyrD	pyrD	2420577	2421593	+	dihydroorotate oxidase	Dihydroorotate oxidase) (Dihydroorotate dehydrogenase) (DHOdehase) (Dihydoorotic acid dehydrogenase)%3B~High confidence in function and specificity	gene	gene2257	http://www.ncbi.nlm.nih.gov/gene/?term=azo2210
azo2211	azo2211	xdhA	xdhA	2421804	2423330	+	xanthine dehydrogenase	Xanthine dehydrogenase (subunit A) oxidoreductase protein%3B~High confidence in function and specificity	gene	gene2258	http://www.ncbi.nlm.nih.gov/gene/?term=azo2211
azo2212	azo2212	xdhB	xdhB	2423317	2425656	+	xanthine dehydrogenase	Xanthine dehydrogenase (subunit B) InterPro: Aldehyde oxidase and xanthine dehydrogenase C terminus%3B~High confidence in function and specificity	gene	gene2259	http://www.ncbi.nlm.nih.gov/gene/?term=azo2212
azo2213	azo2213	xdhC	xdhC	2425667	2426761	+	putative xanthine dehydrogenase protein	xanthine dehydrogenase protein%2C probable (chaperone)%3B~High confidence in function and specificity	gene	gene2260	http://www.ncbi.nlm.nih.gov/gene/?term=azo2213
azo2214	azo2214		azo2214	2426758	2428323	+	conserved hypothetical sugar transporter%2C ATP-binding domain	Conserved hypothetical sugar transporter%2C ATP-binding protein. Homology to orf96 of P. sp strain ADP of 65%25 (TREMBL:Q936X7). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR sugars. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. Pfam: AAA-ATPase%3B ABC transporter. no signal peptide. no TMHs%3B~Specificity unclear	gene	gene2261	http://www.ncbi.nlm.nih.gov/gene/?term=azo2214
azo2215	azo2215		azo2215	2428310	2429374	+	conserved hypothetical ABC transporter%2C permease protein	Conserved hypothetical ABC transporter%2C permease protein. Homology to orf95 of Pseudomonas sp strain ADP of 57%25 (trembl|Q936X8). Bacterial binding protein-dependent transport systems are multicomponent systems typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) (IPR001851). Pfam: Branched-chain ammino acid transporter/permease component. no signal peptide. 9 TMHs%3B~Specificity unclear	gene	gene2262	http://www.ncbi.nlm.nih.gov/gene/?term=azo2215
azo2216	azo2216		azo2216	2429377	2430309	+	probable ABC transporter%2C permease protein	TREMBL:Q8XXD9: 46%25 identity%2C 59%25 similarity Hypothetical protein MG120 homolog (A65_orf517). Bacterial inner-membrane translocator.The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [3%2C 4] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity InterPro:IPR001851%3B Bac_inmem_transp. Pfam:PF02653%3B BPD_transp_2 gntP: gluconate transporter TMH's 9 (TMHMM predicted)%3B~Specificity unclear	gene	gene2263	http://www.ncbi.nlm.nih.gov/gene/?term=azo2216
azo2217	azo2217		azo2217	2430582	2432618	+	putative TonB-dependent receptor	Similar to FecA%2C ferric-citrate outer membrane receptor in E.coli%2C involved in the recognition and internalization of ferric-citrate. InterPro: TonB-dependent receptor protein%3B~Function unclear	gene	gene2264	http://www.ncbi.nlm.nih.gov/gene/?term=azo2217
azo2218	azo2218	cbiK	cbiK	2432622	2433353	+	putative cobalt transport system%2C periplasmic-binding protein	Part of the ABC transporter complex cbiKMQO involved in cobalt import. Similar to the putative periplasmic-binding protein CbiK precursor in A.pleuropneumoniae. thiE: thiamine-phosphate pyrophosphoryla%3B~High confidence in function and specificity	gene	gene2265	http://www.ncbi.nlm.nih.gov/gene/?term=azo2218
azo2219	azo2219		azo2219	2433350	2433829	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to cbiL of Actinobacillus pleuropneumoniae of 39%25 (gi|5733705|gb|AAD49725.1|(NBCI ENTREZ)). Signal P reproting signal peptide present. TMHMM reporting TMH present.%3B~Conserved hypothetical protein	gene	gene2266	http://www.ncbi.nlm.nih.gov/gene/?term=azo2219
azo2220	azo2220	cbiM	cbiM	2433832	2434458	+	putative cobalt transport system%2C permease protein	Part of the ABC transporter complex cbiKMQO involved in cobalt import. Similar to the cobalt transport membrane protein%2C CbiM in A. pleuropneumoniae. InterPro: Cobalamin synthesis CBIM cbiM: cobalamin biosynthesis protein Cbi%3B~High confidence in function and specificity	gene	gene2267	http://www.ncbi.nlm.nih.gov/gene/?term=azo2220
azo2221	azo2221	cbiQ	cbiQ	2434455	2435144	+	putative cobalt transport system permease protein	Part of the ABC transporter complex cbiKMQO involved in cobalt import. Similar to the cobalt transport membrane protein%2C CbiQ in A. pleuropneumoniae.%3B~Function unclear	gene	gene2268	http://www.ncbi.nlm.nih.gov/gene/?term=azo2221
azo2222	azo2222	cbiO	cbiO	2435203	2435838	+	putative cobalt transport system ATP-binding protein	Part of the ABC transporter complex cbiKMQO involved in cobalt import. Probably responsible for the translocation of the substrate across the membrane. 40%25 AAA_ATPase.IPR003439%3B ABC_transporter. Pfam:PF00005%3B ABC_tran%3B 1. ProDom%3B PD000006%3B ABC_transporter%3B 1. SMART%3B SM00382%3B AAA%3B 1.%3B~High confidence in function and specificity	gene	gene2269	http://www.ncbi.nlm.nih.gov/gene/?term=azo2222
azo2223	azo2223	guaD	guaD	2435887	2437182	+	guanine deaminase	Guanine deaminase (Guanase) (Guanine aminase) (GAH)%3B~High confidence in function and specificity	gene	gene2270	http://www.ncbi.nlm.nih.gov/gene/?term=azo2223
azo2224	azo2224	yaiI	yaiI	2437170	2437643	+	YaiI/YqxD family protein	Hypothetical protein yaiI%2C58%25 identical (75%25 similar) to SwissProt%3B P52088%2C of E.coli.SwissProt%3BQ8XEM1(61%25 identity) TrEMBL%3B Q8ED72. Has PF02639%2C Uncharacterized BCR%2C YaiI/YqxD family COG1671%3BIPR003791. No Signal peptide or TMH present.	gene	gene2271	http://www.ncbi.nlm.nih.gov/gene/?term=azo2224
azo2225	azo2225		azo2225	2437796	2439499	+	GGDEF/EAL/PAS-domain containing protein	GGDEF/EAL/PAS-domain containing protein	gene	gene2272	http://www.ncbi.nlm.nih.gov/gene/?term=azo2225
azo2226	azo2226		azo2226	2439509	2440297	-	N-acetylmuramoyl-L-alanine amidase	Probable N-acetylmuramoyl-L-alanine amidase amiA precursor%2C 28%25 identity to TrEMBL%3BQ823N1. 26%25 identity to SwissProt%3BP36548 Has SMART%3BSM00646%2C Ami_3. Signal Peptide present. Has PF01520%3B N-acetylmuramoyl-L-alanine amidase %3BIPR002508 Amidase_3_hydro%3B This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.	gene	gene2273	http://www.ncbi.nlm.nih.gov/gene/?term=azo2226
azo2227	azo2227		azo2227	2440284	2442953	-	GGDEF/EAL/PAS-domain containing protein	GGDEF/EAL/PAS-domain containing protein	gene	gene2274	http://www.ncbi.nlm.nih.gov/gene/?term=azo2227
azo2228	azo2228		azo2228	2442950	2443813	-	conserved hypothetical amino acid-binding protein	Conserved hypothetical amino acid-binding protein. Homology to bb2160 of B. bronchiseptica of 39%25 (trembl|Q7WKE7). PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR AN AMINO ACID. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001311). Pfam: Bacterial extracellular solute-binding protein. Signal peptide. no TMHs%3B~Family membership	gene	gene2275	http://www.ncbi.nlm.nih.gov/gene/?term=azo2228
azo2229	azo2229		azo2229	2443996	2444244	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PSPTO5169 of P.syringae 45%25 (tremble:Q87UX3). No domains predicted. Signal P reporting Signal Peptide present. No TMH being reported as present.%3B~Conserved hypothetical protein	gene	gene2276	http://www.ncbi.nlm.nih.gov/gene/?term=azo2229
azo2230	azo2230		azo2230	2444384	2444647	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to pp2721 of P. putida of 56%25 (trembl|Q88JC8(SRS). no domains predicted. no signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene2277	http://www.ncbi.nlm.nih.gov/gene/?term=azo2230
azo2231	azo2231		azo2231	2444681	2445784	-	putative Mannose-1-phosphate guanylyltransferase	Mannose-1-phosphate guanyltransferase involved in the reaction:GTP + alpha-D-mannose 1-phosphate %3D diphosphate + GDPmannose. 51%25 Hexapep_transf.IPR005835%3B NTP_transferase. Pfam:PF00132%3B Hexapep%3B 2.PF00483%3B NTP_transferase%3B 1.%3B~High confidence in function and specificity	gene	gene2278	http://www.ncbi.nlm.nih.gov/gene/?term=azo2231
azo2232	azo2232	udgH	udgH	2445816	2447138	-	putative UDP-glucose 6-dehydrogenase	61%25 UDPG_MGDP_dh. Pfam:PF00984%3B UDPG_MGDP_dh%3B 1.PF03720%3B UDPG_MGDP_dh_C%3B 1.PF03721%3B UDPG_MGDP_dh_N%3B 1. Signal peptide: present.%3B~High confidence in function and specificity	gene	gene2279	http://www.ncbi.nlm.nih.gov/gene/?term=azo2232
azo2233	azo2233	gumM	gumM	2447180	2447938	-	putative glycosyltransferase	60%25 WecB_TagA_CpsF. Pfam:PF03808%3B Glyco_tran_WecB%3B 1. TIGRFAMs:TIGR00696%3B wecB_tagA_cpsF%3B 1. Non-secretory protein.%3B~High confidence in function and specificity	gene	gene2280	http://www.ncbi.nlm.nih.gov/gene/?term=azo2233
azo2234	azo2234	gumJ	gumJ	2447961	2449433	-	putative polysaccharide translocase	25%25 Polysacc_synt. Pfam:PF01943%3B Polysacc_synt%3B 1. TMhelix:14. Non-secretory protein.%3B~Family membership	gene	gene2281	http://www.ncbi.nlm.nih.gov/gene/?term=azo2234
azo2235	azo2235	gumK	gumK	2449543	2450694	-	putative glucuronyl transferase	64%25%3B~High confidence in function and specificity	gene	gene2282	http://www.ncbi.nlm.nih.gov/gene/?term=azo2235
azo2236	azo2236	eglA	eglA	2450726	2451748	-	putative endoglucanase precursor	41%25 Glyco_hydro_5. Pfam:PF00150%3B Cellulase%3B 1. Signal peptide: present.%3B~High confidence in function and specificity	gene	gene2283	http://www.ncbi.nlm.nih.gov/gene/?term=azo2236
azo2237	azo2237	gumH	gumH	2451745	2452860	-	putative glycosyltransferase	60%25 Glyco_trans_1. Pfam:PF00534%3B Glycos_transf_1%3B 1.%3B~Specificity unclear	gene	gene2284	http://www.ncbi.nlm.nih.gov/gene/?term=azo2237
azo2238	azo2238	gumE	gumE	2452857	2454176	-	putative surface polysaccharide polymerase	26%25%3B~Family membership	gene	gene2285	http://www.ncbi.nlm.nih.gov/gene/?term=azo2238
azo2239	azo2239	gumF	gumF	2454178	2455266	-	putative acetyltransferase	44%25 Acyl_transf_3. Pfam:PF01757%3B Acyl_transf_3%3B 1. TMhelix:9. Non-secretory protein.%3B~High confidence in function and specificity	gene	gene2286	http://www.ncbi.nlm.nih.gov/gene/?term=azo2239
azo2240	azo2240	wzc1	wzc1	2455235	2456101	-	tyrosine-protein kinase	Tyrosine-protein kinase wzc (EC 2.7.10.1). Required for the extracellular polysaccharide colanic acid synthesis. The autophosphorylated form is inactive. Probably involved in the export of colanic acid from the cell to medium (By similarity). gidA: glucose-inhibited division prot%3B~High confidence in function and specificity	gene	gene2287	http://www.ncbi.nlm.nih.gov/gene/?term=azo2240
azo2241	azo2241	gumC	gumC	2456144	2457553	-	putative exopolysaccharide biosynthesis protein	21%25 LPS_Wzz_MPA. Pfam:PF02706%3B Wzz%3B 1. TMhelix:1. Signal peptide:present.%3B~High confidence in function and specificity	gene	gene2288	http://www.ncbi.nlm.nih.gov/gene/?term=azo2241
azo2242	azo2242	gumB	gumB	2457567	2458376	-	putative polysaccharide export protein	Putative capsule polysaccharide export protein precursor.May be involved in polysaccharide polymerization or transport. 36%25 Poly_export. Pfam:PF02563%3B Poly_export%3B 1. Signal peptide: present.%3B~Family membership	gene	gene2289	http://www.ncbi.nlm.nih.gov/gene/?term=azo2242
azo2243	azo2243		azo2243	2458429	2459328	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to TdenA01000001 of Thiobacillus denitrificans of 33%25 (gi|52007706|ref|ZP_00335083.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2290	http://www.ncbi.nlm.nih.gov/gene/?term=azo2243
azo2244	azo2244		azo2244	2459330	2459746	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains pedicted. No TMHs signal peptide	gene	gene2291	http://www.ncbi.nlm.nih.gov/gene/?term=azo2244
azo2245	azo2245		azo2245	2459794	2460981	-	hypothetical secreted protein	Hypothetical secreted protein. No good homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene2292	http://www.ncbi.nlm.nih.gov/gene/?term=azo2245
azo2246	azo2246	gumD	gumD	2461174	2462565	+	putative glycosyltransferase	43%25 Bact_transf. Pfam:PF02397%3B Bac_transf%3B 1. TMhelix:5.%3B~Specificity unclear	gene	gene2293	http://www.ncbi.nlm.nih.gov/gene/?term=azo2246
azo2247	azo2247		azo2247	2462824	2464230	+	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs	gene	gene2294	http://www.ncbi.nlm.nih.gov/gene/?term=azo2247
azo2248	azo2248		azo2248	2464264	2464395	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2295	http://www.ncbi.nlm.nih.gov/gene/?term=azo2248
azo2249	azo2249		azo2249	2464506	2465156	+	putative DNA polymerase related protein	Region start changed from 2464498 to 2464507 (-9 bases)	gene	gene2296	http://www.ncbi.nlm.nih.gov/gene/?term=azo2249
azo2250	azo2250	thmS1	thmS1	2465256	2466758	-	probable succinate semialdehyde dehydrogenase [NAD(P)+]	probable succinate semialdehyde dehydrogenase [NAD(P)+). Homology to thmS of Pseudonocardia sp. K1 of 55%25 (trembl|Q9F3V7). Is capable of oxidizing substrates using NADP as cofactor. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~Family membership	gene	gene2297	http://www.ncbi.nlm.nih.gov/gene/?term=azo2250
azo2251	azo2251		azo2251	2467221	2467694	-	conserved hypothetical protein	Hypothetical protein%2C 30%25 identiy(50%25 similarity) to TrEMBL%3BQ8FYJ1. TrEMBL%3BQ8YJA6. Has (IPR010755)PF07049%2CProtein of unknown function (DUF1332)%3BThis family consists of several hypothetical bacterial proteins of around 165 residues in length. The function of this family is unknown. No Signal peptide or TMH present.%3B~Function unclear	gene	gene2298	http://www.ncbi.nlm.nih.gov/gene/?term=azo2251
azo2252	azo2252		azo2252	2467705	2468685	-	conserved hypothetical BNR domain protein	Conserved hypothetical BNR domain protein. Homology to pa3080 of P. aeruginosa of 38%25 (trembl|Q9HZC8). InterPro: BNR repeat (IPR002860). Pfam: BNR repeat. BNR repeats are short repeats never found closer than 40 residues together%2C which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. singal peptide. no TMHs%3B~Function unclear	gene	gene2299	http://www.ncbi.nlm.nih.gov/gene/?term=azo2252
azo2253	azo2253		azo2253	2468697	2471060	-	probable exporter of RND superfamily	Putative membrane protein MJ1562. TREMBL:Q88J37: 52%25 identity%2C 66%25 similarity InterPro:IPR001036%3B Acrflvin_res. IPR000731%3B SSD_5TM Pfam:Patched:Patched family 2A067: efflux transporter putative Presence of signal peptide (Signal P predicted). Transmembrane helices 12 (TMHMM predicted)%3B~Family membership	gene	gene2300	http://www.ncbi.nlm.nih.gov/gene/?term=azo2253
azo2254	azo2254		azo2254	2471191	2472987	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PP2811 of P.putida of 32%25 (tremble:Q88J38). Has PF06980%3BProtein of unknown function (DUF1302)domain%3BIPR010727 This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas. Signal peptide present. No TMH reported.%3B~Conserved hypothetical protein	gene	gene2301	http://www.ncbi.nlm.nih.gov/gene/?term=azo2254
azo2255	azo2255		azo2255	2473019	2474398	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA3081 of P.aeruginosa of 43%25 (trembl:Q9HZC7). Has pfam07044%2C DUF1329%2C Protein of unknown function (DUF1329). IPR010752%3B This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. Signal Peptide present. No TMH being reported.%3B~Conserved hypothetical protein	gene	gene2302	http://www.ncbi.nlm.nih.gov/gene/?term=azo2255
azo2256	azo2256		azo2256	2474463	2474945	-	conserved hypothetical cytochrome c-552	Conserved hypothetical cytochrome c-552. Homology to Bcepa03004834 of Burkholderia cepacia of 38%25 (gi|46313246|ref|ZP_00213837.1|(NBCI ENTREZ)). InterPro: Cytochrome c class I (IPR003088). Pfam: cytochrome c. probable signal peptide. no TMHS%3B~Conserved hypothetical protein	gene	gene2303	http://www.ncbi.nlm.nih.gov/gene/?term=azo2256
azo2257	azo2257	mauA	mauA	2474953	2475486	-	probable methylamine dehydrogenase%2C L chain	Probable methylamine dehydrogenase. Homology to mauD of P. denifrificans of 45%25 (CAA67190) carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin. InterPro: Methylamine dehydrogenase L subunit (IPR004229) Pfam: Methylamine dehydrogenase%2C L chain signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2304	http://www.ncbi.nlm.nih.gov/gene/?term=azo2257
azo2258	azo2258	mauD	mauD	2475508	2476110	-	probable methylamine utilization protein mauD	Probable methylamine utilization protein. My be specifically involved in the processing transport and/or maturation of the methylamine dehydrogenase beta-subunit. Tigrfam: dsbE: periplasmic protein thiol:disulfide Signal peptide probable 1 TMHs%3B~Family membership	gene	gene2305	http://www.ncbi.nlm.nih.gov/gene/?term=azo2258
azo2259	azo2259	mauE	mauE	2476107	2476658	-	putative methylamine utilization protein mauE	Methylamine utilization protein mauE. Homology to mauE of M. extorquens of 37%25 (sprot|MAUE_METEX) MAY BE SPECIFICALLY INVOLVED IN THE PROCESSING TRANSPORT AND/OR MATURATION OF THE MADH BETA-SUBUNIT. no signal peptide probable 4 TMHs%3B~Family membership	gene	gene2306	http://www.ncbi.nlm.nih.gov/gene/?term=azo2259
azo2260	azo2260	maub	maub	2476658	2477812	-	putative methylamine dehydrogenase heavy chain precursor	Methylamine dehydrogenase heavy chain precursor (MADH):- Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin. Entry name SWISSPROT:DHMH_METEX Prim. accession # Q49124 Identities %3D 100/339 (29%25) Prediction: Signal peptide Signal peptide probability: 1.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene2307	http://www.ncbi.nlm.nih.gov/gene/?term=azo2260
azo2261	azo2261	eutR	eutR	2478283	2479272	+	putative ethanolamine operon transcriptional regulator	Putative ethanolamine operon transcriptional regulator%2C%3B~Family membership	gene	gene2308	http://www.ncbi.nlm.nih.gov/gene/?term=azo2261
azo2262	azo2262	pdhR	pdhR	2479608	2480288	+	putative pyruvate dehydrogenase complex repressor	Putative pyruvate dehydrogenase complex repressor%2C%3B~Family membership	gene	gene2309	http://www.ncbi.nlm.nih.gov/gene/?term=azo2262
azo2263	azo2263		azo2263	2480340	2481158	+	putative amino acid-binding protein	Putative amino acid-binding protein. Homology to fliy of E. coli of 26%25 (AAC43545). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR amino acids. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR1638)%3B solute binding protein/glutamte receptor (IPR001311) Pfam: Bacterial extracellular solute-binding protein signal peptide no TMHS hisG: ATP phosphoribosyltransferase%3B~Specificity unclear	gene	gene2310	http://www.ncbi.nlm.nih.gov/gene/?term=azo2263
azo2264	azo2264		azo2264	2481229	2481897	+	amino acid ABC transporter%2C permease protein	Amino acid ABC transporter%2C permease protein%2C 75%25 Identity to TrEMBL%3BQ87UQ0%2C 65%25 Identity to TrEMBL%3BQ8XXK9%2CQ6F6T8. Has PF00528%3B IPR000515%2C BPD_transp%3B Bacterial binding protein-dependent transport systems are multicomponent systems typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region%2Cthe sequence of these proteins is quite divergent%2C and they have a variable number of transmembrane helices%2Chowever they can be classified into seven families which have been respectively termed: araH%2C cysTW%2C fecCD%2C hisMQ%2ClivHM%2C malFG and oppBC. Has PROSITE%3BPS50928%3B ABC_TM1	gene	gene2311	http://www.ncbi.nlm.nih.gov/gene/?term=azo2264
azo2265	azo2265		azo2265	2481897	2482550	+	conserved hypothetical amino acid permease	Conserved hypothetical amino acid permease. Homology to pspto5247 of P. syringae (trembl|Q87UP9). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE (BY SIMILARITY). Interpro: binding-protein-depenent transport system inner membrane component (IPR000515). Pfam: Binding-protein-dependent transport system. no signal peptide. 3 TMHs%3B~Specificity unclear	gene	gene2312	http://www.ncbi.nlm.nih.gov/gene/?term=azo2265
azo2266	azo2266	glnQ2	glnQ2	2482537	2483265	+	probable glutamine transport ATP-binding protein	Probable glutamine transport ATP-binding protein. Homology with glnQ of B. stearothermophilus of 53%25 (sprot|GLNQ_BACST). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR GLUTAMINE. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. InterPro: AAA ATPase superfamily (IPR003593)%2C ABC_Transporter (IPR003439)%2C ATP/GTP_binding site motif A (P-loop) (IPR001687) Pfam: ABC transporter no signal peptide no TMHs mobB: molybdopterin-guanine dinucleotid%3B~High confidence in function and specificity	gene	gene2313	http://www.ncbi.nlm.nih.gov/gene/?term=azo2266
azo2267	azo2267	gstB	gstB	2483290	2483919	-	putative glutathione transferase	Probable Glutathione transferase. Homology to gstB of P. mirablilis of 29%25 (sprot|GT_PROMI). Catalysis of the reaction: R-X + glutathione %3D H-X + R-S-glutathione. R may be an aliphatic%2C aromatic or heterocyclic group%3B X may be a sulfate%2C nitrile or halide group. InterPro: Glutathione S-transferase N terminus(IPR004045)%2C Glutathione S-transferase C terminus (IPR004046) Pfam: Glutathione S-transferase%2C N-terminale domaine no signal peptide no TMHs%3B~Family membership	gene	gene2314	http://www.ncbi.nlm.nih.gov/gene/?term=azo2267
azo2268	azo2268		azo2268	2484151	2484591	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to pp4833 of P. putida of 55%25 (trembl|Q88DJ2). no domains predicted. no signal peptide. 2 TMHs%3B~Conserved hypothetical protein	gene	gene2315	http://www.ncbi.nlm.nih.gov/gene/?term=azo2268
azo2269	azo2269		azo2269	2484632	2485495	+	conserved hypothetical band 7 family protein	Conserved hypothetical band 7 family protein. Homology to pp4834 of P.putida of 67%25 (trembl|Q88DJ1). InterPro: Band 7 protein (IPR001107). Pfam: SPFH domain / Band 7 family. The band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins%2C cytoplasmic anti-proliferative proteins and stomatin%2C an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. probable 1 TMH. probable signal peptide (overlapping with the TMH)%3B~Family membership	gene	gene2316	http://www.ncbi.nlm.nih.gov/gene/?term=azo2269
azo2270	azo2270		azo2270	2485527	2487548	-	methyl-accepting chemotaxis transducer	Methyl-accepting chemotaxis transducer%2C%3B~Specificity unclear	gene	gene2317	http://www.ncbi.nlm.nih.gov/gene/?term=azo2270
azo2271	azo2271		azo2271	2487857	2488717	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03003250 of Dechloromonas aromatica of 32%25 (gi|41723264|ref|ZP_00150207.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.	gene	gene2318	http://www.ncbi.nlm.nih.gov/gene/?term=azo2271
azo2272	azo2272	kup	kup	2488755	2490671	-	putative potassium uptake protein	Low affinity potassium transport system protein%2CKup. In E.coli%2C Kup has two domains%2C the first aa residues form an integral membrane domain and the C-terminal residues form a hydrophilic ones located at the citoplasmic side of the membrane. Kup: involved in potassium uptake and metabolism.%3B~High confidence in function and specificity	gene	gene2319	http://www.ncbi.nlm.nih.gov/gene/?term=azo2272
azo2273	azo2273		azo2273	2490788	2491693	-	conserved hypothetical protein	Conserved hypothetical protein:- Entry name:-TREMBL:Q89MA9 Prim. accession # Q89MA9 InterPro:-IPR000379%3B Ser_estrs. Identities %3D 120/294 (40%25) Pfam:-Thioesterase domain Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0	gene	gene2320	http://www.ncbi.nlm.nih.gov/gene/?term=azo2273
azo2274	azo2274	sbp1	sbp1	2491893	2492903	-	putative sulfate-binding protein precursor	Sulfate-binding protein precursor%2C Sbp. E.coli Sulfate starvation-induced protein 2%2CSSI2. This protein specifically binds sulfate and is involved in its transmembrane transport. InterPro: Prokaryotic sulfate-/thiosulfate-binding protein. In other bacteria Sbp is a periplasmic component of an ABC transport system. TIGR00363: lipoprotein YaeC family Signal peptide%3B~High confidence in function and specificity	gene	gene2321	http://www.ncbi.nlm.nih.gov/gene/?term=azo2274
azo2275	azo2275		azo2275	2493040	2493828	-	putative glutamine amidotransferase	Hypothetical protein ycjL. TREMBL:Q890B8: 38%25 identity%2C 53%25 similarity. Glutamine amidotransferase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a pecific substrate%2C thus creating a new carbon-nitrogen group on the substrate. InterPro:IPR000991%3B GATase_1 PROSITE PS00442 GATASE_TYPE_I BLOCKS: BL00442 PFAM:PF00117 GATase%3B PF00310 GATase_2 trpG_papA: glutamine amidotransferase o No signal peptide (SignalP predicted) No transmembrane helices%3B~High confidence in function and specificity	gene	gene2322	http://www.ncbi.nlm.nih.gov/gene/?term=azo2275
azo2276	azo2276	ybdK	ybdK	2493825	2494952	-	Glutamate-cysteine ligase	Glutamate-cysteine ligase ybdK%2C40%25 identity(56%25 similarity) to TrEMBL%3BQ8FK30. 57%25 identity to TrEMBL%3BQ8XU95. Has PF04107%2C Glutamate-cysteine ligase family 2(GCS2)%3BIPR006336:Also known as gamma-glutamylcysteine synthetase and gamma-ECS . This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea%2C bacteria and plants. May and Leaver [1] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes%2Cfrom an ancestral bacterial enzyme.%3B~Conserved hypothetical protein	gene	gene2323	http://www.ncbi.nlm.nih.gov/gene/?term=azo2276
azo2277	azo2277		azo2277	2494949	2496157	-	conserved hypothetical Na/H antiporter	Conserved hypothetical Na/H antiporter. Homology to Bucepa03004091 of B.cepacia of 41%25 (gi|46320868|ref|ZP_00221251.1|(NBCI ENTREZ)). Has PF00999 Sodium/hydrogen exchanger family%3B IPR006153. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus%2C this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. No signal peptide. 12 TMHs.%3B~Conserved hypothetical protein	gene	gene2324	http://www.ncbi.nlm.nih.gov/gene/?term=azo2277
azo2278	azo2278		azo2278	2496728	2498482	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to pa3943 of P. aeruginosa (TREMBL:Q9HX73). no domians predicted. weak evidence for signal peptide. no TMHs	gene	gene2325	http://www.ncbi.nlm.nih.gov/gene/?term=azo2278
azo2279	azo2279		azo2279	2498525	2499364	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Avin02000067 of Azotobacter vinelandii of 50%25 (gi|23105742|ref|ZP_00092196.1|(NBCI ENTREZ)). InterPro: Ankyrin-repeat. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids.The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90 angle. The repeats stack together to form an L-shaped structure. No signal peptide. No TMHs.	gene	gene2326	http://www.ncbi.nlm.nih.gov/gene/?term=azo2279
azo2280	azo2280		azo2280	2499372	2499698	+	Hypothetical protein	Hypothetical protein 25%25 Identity to TrEMBL%3BQ7U749. No domains%2C repeats%2C motifs or features present	gene	gene2327	http://www.ncbi.nlm.nih.gov/gene/?term=azo2280
azo2281	azo2281	nifF2	nifF2	2499793	2500329	+	probable flavodoxin	probable flavodoxin. Homology to nifF of A. vinelandii of 58%25 (pir|FXAVEP) Flavodoxins are electron-transfer proteins that function in various electron transport systems. Flavodoxins bind one FMN molecule%2Cwhich serves as a redox-active prosthetic group and are functionally interchangeable with ferredoxins. InterPro: Flavodoxin (IPR001226) Pfam: Flavodoxin no signal peptide no TMHs taut: 4-oxalocrotonate tautomerase%3B~High confidence in function and specificity	gene	gene2328	http://www.ncbi.nlm.nih.gov/gene/?term=azo2281
azo2282	azo2282		azo2282	2500478	2503111	+	conserved hypothetical protein	Conserved hypothetical protein. Identity to Daro_1071 of Dechloromonas aromatica of 41%25 (gi|71846331|gb|AAZ45827.1|). Pfam: CheW-like domain. CheW-like domain proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY%2C which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW%2C suggesting that these domains can interact with each other.	gene	gene2329	http://www.ncbi.nlm.nih.gov/gene/?term=azo2282
azo2283	azo2283		azo2283	2503186	2503836	+	conserved hypothetical protein	Similar to TREMBL:Q92PT6 (40%25 identical)%3B TREMBL:Q98MM5 (39%25 identical).	gene	gene2330	http://www.ncbi.nlm.nih.gov/gene/?term=azo2283
azo2284	azo2284		azo2284	2503871	2504842	-	putative periplasmic substrate binding protein	Similar to TREMBL:Q9RBR1 (43%25 identity)%3B TREMBL:Q8GN85 (42%25 identity)%3B TREMBL:Q87NF7 (23%25 identity). SignalP predicting signal peptide.%3B~Specificity unclear	gene	gene2331	http://www.ncbi.nlm.nih.gov/gene/?term=azo2284
azo2285	azo2285	dctM3	dctM3	2504880	2506196	-	putative TRAP-type C4-dicarboxylate transport system%2C large permease	The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 38%25 DctM.IPR000252%3B DedA.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. Signal peptide:present. TMhelix:11.%3B~Specificity unclear	gene	gene2332	http://www.ncbi.nlm.nih.gov/gene/?term=azo2285
azo2286	azo2286	dctQ3	dctQ3	2506198	2506716	-	putative TRAP-type C4-dicarboxylate transport system%2C small permease component	TRAP-type C4-dicarboxylate transport system%2C small permease component. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate.40%25 DctQ. Pfam:PF04290%3B DctQ%3B 1. TMHelix:3.%3B~Function unclear	gene	gene2333	http://www.ncbi.nlm.nih.gov/gene/?term=azo2286
azo2287	azo2287		azo2287	2506856	2507242	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to tll1086 of T.elongatus of 62%25 (trembl:Q8DJY4). No domains predicted. No TMHs. No signal peptide.	gene	gene2334	http://www.ncbi.nlm.nih.gov/gene/?term=azo2287
azo2288	azo2288		azo2288	2507315	2508640	-	HD-domain containing protein	HD-domain containing protein%2C%3B~Conserved hypothetical protein	gene	gene2335	http://www.ncbi.nlm.nih.gov/gene/?term=azo2288
azo2289	azo2289		azo2289	2509010	2509729	+	putative transport ATPase	Mg(2+) transport ATPase [mgtC family protein]%2C 35%25 identity(54%25 similarity) to TrEMBL%3BQ7NTN3. Has PF02308%2CMgtC family%3B(IPR003416%2C MgtCSapB_transpt)%3BThe MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known%2C but it is thought that MgtC may act as an accessory protein for MgtB%2C thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins. NO Signal Peptide or TMH present.%3B~Family membership	gene	gene2337	http://www.ncbi.nlm.nih.gov/gene/?term=azo2289
azo2290	azo2290		azo2290	2509855	2510652	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to hypothetical protein all0327 of Anabaena sp. of 52%25. no signal peptid. no TMHs. No domains predicted.	gene	gene2338	http://www.ncbi.nlm.nih.gov/gene/?term=azo2290
azo2291	azo2291	tfoX	tfoX	2510662	2511024	+	conserved hypothetical DNA transformation protein (competence activator)	Conserved hypothetical DNA transformation protein%2C%3B~Conserved hypothetical protein	gene	gene2339	http://www.ncbi.nlm.nih.gov/gene/?term=azo2291
azo2292	azo2292	ada	ada	2511136	2512284	+	Methylated-DNA--[protein]-cysteine S-methyltransferase	Methylated-DNA--[protein]-cysteine S-methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) InterPro: Methylated-DNA--protein-cysteine methyltransferase%3B~High confidence in function and specificity	gene	gene2340	http://www.ncbi.nlm.nih.gov/gene/?term=azo2292
azo2293	azo2293	alkB	alkB	2512299	2512964	+	DNA-directed DNA polymerase.	Alkylated DNA repair protein.Probably involved in the repair of alkylated DNA. Provides extensive resistance to alkylating agents.%3B~High confidence in function and specificity	gene	gene2341	http://www.ncbi.nlm.nih.gov/gene/?term=azo2293
azo2294	azo2294		azo2294	2513048	2514142	+	carboxypeptidase A	Putative Zinc carboxypeptidase-related protein%2C 45%25 identity to TrEMBL%3BQ6MKH4%2CZinc carboxypeptidase-related protein (EC 3.4.17.-) [Bd2418] [Bdellovibrio bacteriovorus] Has pfam00246%2C Zn_carbOpept%2C Zinc carboxypeptidase domain.%3B~High confidence in function and specificity	gene	gene2342	http://www.ncbi.nlm.nih.gov/gene/?term=azo2294
azo2295	azo2295		azo2295	2514180	2514956	+	putative hydrolase	TREMBL:Q8EFJ6: 33%25 identity%2C 47%25 similarity. Probable Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component). Interpro:IPR000073%3B A/b_hydrolase (alpha/beta fold family). IPR000379%3B Ser_estrs. Pfam PF00561%3B Abhydrolase_1%3B 1 2a75: L-lysine exporter%3B~Function unclear	gene	gene2343	http://www.ncbi.nlm.nih.gov/gene/?term=azo2295
azo2296	azo2296	phhB	phhB	2515151	2515504	+	4a-hydroxytetrahydrobiopterin dehydratase	PHS (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD). InterPro: Pterin 4 alpha carbinolamine dehydratase%3B~High confidence in function and specificity	gene	gene2344	http://www.ncbi.nlm.nih.gov/gene/?term=azo2296
azo2297	azo2297		azo2297	2515532	2515825	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS05664 of R.solanacearum of 53%25 (trembl:Q8XQC7). No domains predicted. No signal peptide or TMH reported present.	gene	gene2345	http://www.ncbi.nlm.nih.gov/gene/?term=azo2297
azo2298	azo2298		azo2298	2515850	2516959	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to PA1356 of Pseudomonas aeruginosa of 69%25 (trembl|Q9I3Y8(SRS)). No domains predicted. No signal peptide or TMH reported to be present.	gene	gene2346	http://www.ncbi.nlm.nih.gov/gene/?term=azo2298
azo2299	azo2299	aidB1	aidB1	2516981	2518624	+	probable acyl-CoA dehydrogenase	Aidb protein:-belongs to the acyl-coa dehydrogenase family. Catalysis of the reaction: acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor. Entry name SWISSPROT:AIDB_ECOLI Prim. accession # P33224 Identities %3D 257/515 (49%25) InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1 Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene2347	http://www.ncbi.nlm.nih.gov/gene/?term=azo2299
azo2300	azo2300		azo2300	2519006	2520262	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ORF428 of Roseateles depolymerans of 65%25 (trembl|Q9F206(SRS)). Pfam: Protein of unknown function (DUF1504). This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown. signal peptide. 10 TMHs%3B~Conserved hypothetical protein	gene	gene2348	http://www.ncbi.nlm.nih.gov/gene/?term=azo2300
azo2301	azo2301	gspE3	gspE3	2520561	2522381	+	general secretory pathway protein E	General secretion pathway protein E%2C%3B~Specificity unclear	gene	gene2349	http://www.ncbi.nlm.nih.gov/gene/?term=azo2301
azo2302	azo2302		azo2302	2522542	2523762	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Mll6421 of M.loti of 37%25 (trembl:Q989H3). Has PF02661%2C Fic protein family%3BIPR003812:This family consists of the Fic (filamentation induced by cAMP) protein and its relatives. The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate%2C indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. No signal peptide or TMH present.	gene	gene2350	http://www.ncbi.nlm.nih.gov/gene/?term=azo2302
azo2303	azo2303		azo2303	2523759	2525189	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Daro03002720 of Dechloromonas aromatica of 55%25 (gi|41723618|ref|ZP_00150528.1|(NBCI ENTREZ)). Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters.MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Similar to proteins involved in tetracycline resistance. Hypothetical transport protein yhcA%2C from B.subtilis. InterPro: Drug resistance transporter EmrB/QacA subfamily efflux_EmrB: drug resistance transport. Signal peptide predicted. 13 TMHs%3B~Function unclear	gene	gene2351	http://www.ncbi.nlm.nih.gov/gene/?term=azo2303
azo2304	azo2304		azo2304	2525577	2526161	-	transcriptional regulator%2C MerR-family	Transcriptional regulator%2C MerR-family InterPro: Bacterial regulatory protein%2C MerR%2C Putative DNA binding HTH reporting nucleic acid binding motif	gene	gene2352	http://www.ncbi.nlm.nih.gov/gene/?term=azo2304
azo2305	azo2305		azo2305	2526158	2526574	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV1954 of Chromobacterium violaceum of 33%25 (trembl:Q7NWM9). No domains predicted. No TMHs. No signal peptide.	gene	gene2353	http://www.ncbi.nlm.nih.gov/gene/?term=azo2305
azo2306	azo2306		azo2306	2526840	2527454	+	putative Tyrosine recombinase xerD	Tyrosine recombinase xerD. Site-specific tyrosine recombinase which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerC binding sites by a short central region forming the heterotetrameric xerC-xerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex xerD specifically exchanges the bottom DNA strands (By similarity). InterPro: Phage integrase%3B~Specificity unclear	gene	gene2354	http://www.ncbi.nlm.nih.gov/gene/?term=azo2306
azo2307	azo2307		azo2307	2527848	2531426	+	Hypothetical protein	Hypothetical protein%2C 39%25 similarity to TrEMBL%3BQ8Z0Z1. No Signal Peptide or TMH present. TIGR00090: iojap-related protein	gene	gene2355	http://www.ncbi.nlm.nih.gov/gene/?term=azo2307
azo2308	azo2308		azo2308	2531423	2537752	+	putative helicase related protein	Hypothetical protein yjiV. TREMBL:Q8XC75: 33%25 identity%2C 49%25 similarity InterPro: IPR001410%3BDEAD/DEAH box helicase IPR001650%3B Helicase_C. Pfam: PF00270%3B DEAD%3B 1. PF00271%3B Helicase_C%3B 1. SMART: SM00487%3B DEXDc%3B 1. SM00490%3B HELICc L18_bact: ribosomal protein L18 No signal peptide No transmembrane helices%3B~High confidence in function and specificity	gene	gene2356	http://www.ncbi.nlm.nih.gov/gene/?term=azo2308
azo2309	azo2309		azo2309	2537814	2538605	+	conserved hypothetical protein	Conserved hypothetical protein. 61%25 identity to hypothetical protein Bucepa02000624 [Burkholderia cepacia R1808] (gi|46324486|ref|ZP_00224847.1|(NBCI ENTREZ)). NO Signal peptide or TMH reported present. no domains predicted	gene	gene2357	http://www.ncbi.nlm.nih.gov/gene/?term=azo2309
azo2310	azo2310	palZ	palZ	2538956	2540617	-	putative alpha-D-1%2C4-glucosidase	Alpha -D-1%2C4-glucosidase%2C PalZ. Involved in the hydrolysis of terminal 1%2C4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose. 55%25 Alpha_amyl_cat.IPR006589%3B Alp_amyl_cat_sub.IPR006046%3B Glyco_hydro_13. Pfam:PF00128%3B Alpha-amylase%3B1.%3B~High confidence in function and specificity	gene	gene2358	http://www.ncbi.nlm.nih.gov/gene/?term=azo2310
azo2311	azo2311	spr1	spr1	2540718	2541824	+	putative glucan 1%2C3-beta-glucosidase	Glucan 13-beta-glucosidase precursor (EC 3.2.1.58) (Exo-13-beta- glucanase).BETA-GLUCANASES PARTICIPATE IN THE METABOLISM OF BETA-GLUCAN THE MAIN STRUCTURAL COMPONENT OF THE CELL WALL. IT COULD ALSO FUNCTION BIOSYNTHETICALLY AS A TRANSGLYCOSYLASE. 33%25 Glyco_hydro_5. Pfam:PF00150%3B Cellulase%3B 1.%3B~High confidence in function and specificity	gene	gene2359	http://www.ncbi.nlm.nih.gov/gene/?term=azo2311
azo2312	azo2312		azo2312	2541810	2543588	-	conserved hypothetical membran protein	Conserved hypothetical membrane protein. Homology to Avin02002177 of Azotobacter vinelandii of 61%25 (gi|53611929|ref|ZP_00090985.2|(NBCI ENTREZ)). InterPro: ABC transporter (IPR003439). Pfam: ABC transporter. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene2360	http://www.ncbi.nlm.nih.gov/gene/?term=azo2312
azo2313	azo2313	glk2	glk2	2543591	2544544	-	putative glucokinase	Glucokinase (EC 2.7.1.2) (Glucose kinase). Catalytic activity: ATP + d-glucose %3D ADP+ d-glucose 6-phosphate. 24%25 Glucokinase. Pfam:PF02685%3B Glucokinase%3B 1. TIGRFAMs:TIGR00749%3B glk%3B 1.%3B~High confidence in function and specificity	gene	gene2361	http://www.ncbi.nlm.nih.gov/gene/?term=azo2313
azo2314	azo2314		azo2314	2544700	2546202	+	glycosyltransferase	Family membership	gene	gene2362	http://www.ncbi.nlm.nih.gov/gene/?term=azo2314
azo2315	azo2315		azo2315	2546172	2546876	+	conserved hypothetical tyrosine/serine phosphatase	Conserved hypothetical tyrosine/serine phosphatase%2C%3B~Conserved hypothetical protein	gene	gene2363	http://www.ncbi.nlm.nih.gov/gene/?term=azo2315
azo2316	azo2316	msbA1	msbA1	2546873	2548639	+	Lipid A export ATP-binding/permease protein	Lipid A export ATP-binding/permease protein msbA. MsbA (TC 3.A.1.106.1) is involved in lipid A and possibly also glycerophospholipids export. The transmembrane domain (TMD) forms a pore in the inner membrane and the ATP-binding domain (NBD) is responible for energy generation. Similar to TREMBL:Q8ZGA9%3B TREMBL:Q8XXB6%3B SWISSPROT:P60752 (37%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. InterPro (IPR001140): ABC transporter%2C transmembrane region. Pfam (PF00664): ABC transporter transmembrane region. Pfam (PF00005): ABC transporter. TMHMM reporting five transmembrane helices. TC (3.A.1.106): The Lipid Exporter (LipidE) Family.%3B~High confidence in function and specificity	gene	gene2364	http://www.ncbi.nlm.nih.gov/gene/?term=azo2316
azo2317	azo2317		azo2317	2548636	2549829	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. No homology of the entire protein to the data bank. no dmains predicted. no signal peptide. no TMHs	gene	gene2365	http://www.ncbi.nlm.nih.gov/gene/?term=azo2317
azo2318	azo2318		azo2318	2549826	2551112	+	hypothetical membrane protein	Hypothetical membrane protein. homology to rsc2204 of R.solanacearum of 28%25 (trembl|Q8XXB2(SRS)). no domains predicted. no signal peptide. 10 TMHs	gene	gene2366	http://www.ncbi.nlm.nih.gov/gene/?term=azo2318
azo2319	azo2319		azo2319	2551109	2551732	+	glycosyltransferase	CMP-N-acetylneuraminate-beta-galactosamide-alpha-23-sialyltransferase (EC 2.4.99.4) (Beta-galactoside alpha-23-sialyltransferase) (Alpha 23-ST) (Gal-NAc6S) (Gal-beta-13-GalNAc-alpha-23-sialyltransferase) (ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (ST3Gal I). IT MAY BE RESPONSIBLE FOR THE SYNTHESIS OF THE SEQUENCE NEUAC-ALPHA-23-GAL-BETA-13-GALNAC- FOUND ON SUGAR CHAINS O-LINKED TO THR OR SER AND ALSO AS A TERMINAL SEQUENCE ON CERTAIN GANGLIOSIDES. SIAT4-A AND SIAT4-B SIALYLATE THE SAME ACCEPTOR SUBSTRATES BUT EXHIBIT DIFFERENT KM VALUES.%3B~Specificity unclear	gene	gene2367	http://www.ncbi.nlm.nih.gov/gene/?term=azo2319
azo2320	azo2320		azo2320	2551737	2552735	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Rsph03001342 of Rhodobacter sphaeroides of 39%25 (gi|22957735|ref|ZP_00005426.1|(NBCI ENTREZ)). Has PF04230%2C Polysaccharide pyruvyl transferase%3BIPR007345 PS_pyruv_trans%3B Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora. No signal peptide. No TMHs	gene	gene2368	http://www.ncbi.nlm.nih.gov/gene/?term=azo2320
azo2321	azo2321	waaC1	waaC1	2552955	2554031	+	lipopolysaccharide heptosyltransferase I	High confidence in function and specificity	gene	gene2369	http://www.ncbi.nlm.nih.gov/gene/?term=azo2321
azo2322	azo2322		azo2322	2554028	2555143	+	glycosyltransferase	Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-). InterPro: Glycosyl transferases group 1%3B~Specificity unclear	gene	gene2370	http://www.ncbi.nlm.nih.gov/gene/?term=azo2322
azo2323	azo2323		azo2323	2555172	2556242	+	glycosyltransferase	Lipopolysaccharide core biosynthesis glycosyl transferase lpsE (EC 2.-.-.-).%3B~Specificity unclear	gene	gene2371	http://www.ncbi.nlm.nih.gov/gene/?term=azo2323
azo2324	azo2324		azo2324	2556244	2557083	+	putative polysaccharide deacetylase	29%25 Polysac_deacet. Pfam:PF01522%3B Polysacc_deac_1%3B 1.%3B~High confidence in function and specificity	gene	gene2372	http://www.ncbi.nlm.nih.gov/gene/?term=azo2324
azo2325	azo2325		azo2325	2557095	2557580	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV1439 of Chromobacterium violaceum of 58%25 (trembl:Q7NY36). No domains predicted. No TMHs. No signal peptide.	gene	gene2373	http://www.ncbi.nlm.nih.gov/gene/?term=azo2325
azo2326	azo2326		azo2326	2557664	2559307	+	conserved hypothetical signaling protein	Conserved hypothetical signaling protein%2C%3B~Conserved hypothetical protein	gene	gene2374	http://www.ncbi.nlm.nih.gov/gene/?term=azo2326
azo2327	azo2327	cbl 2	cbl 2	2559320	2560276	-	putative HTH-type transcriptional regulator cbl	HTH-type transcriptional regulator cbl (Cys regulon transcriptional activator) Belongs to the LysR family of transcriptional regulators. THIS PROTEIN IS A POSITIVE REGULATOR OF GENE EXPRESSION FOR THE CYSTEINE REGULON. THE INDUCER FOR CYSB IS N-ACETYLSERINE (BY SIMILARITY). ribD_Cterm: riboflavin-specific deami 42%25 similarity to the HTH-type transcriptional regulator cbl%2C E. coli SWISSPROT:CBL_ECOLI IPR000847%3B HTH_LysR. IPR005119%3B LysR_subst. PF00126%3B HTH_1%3B 1. helix-turn-helix PF03466%3B LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~High confidence in function and specificity	gene	gene2375	http://www.ncbi.nlm.nih.gov/gene/?term=azo2327
azo2328	azo2328	pspF	pspF	2560607	2561695	+	probable transcriptional regulator	Probable transcriptional regulator%2C%3B~Specificity unclear	gene	gene2376	http://www.ncbi.nlm.nih.gov/gene/?term=azo2328
azo2329	azo2329	tonB2	tonB2	2561964	2562611	+	periplasmic biopolymer transport protein linking inner and outer membranes	For the transport of bound iron across the inner membrane%2C a receptor complex is needed. The major component of this is tonB%2C a 27kDa protein that facilitates energy transfer from the proton motive force to outer membrane receptors. InterPro: Proline-rich region%3B~Function unclear	gene	gene2377	http://www.ncbi.nlm.nih.gov/gene/?term=azo2329
azo2330	azo2330	exbB4	exbB4	2562648	2563469	+	putative biopolymer transport protein ExbB	Putative biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 36%25. ExbB is part of the TonB-dependent transduction complex. The tonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. Pfam: MotA/TolQ/ExbB proton channel family signal peptide most probable 4TMHs%3B~Family membership	gene	gene2378	http://www.ncbi.nlm.nih.gov/gene/?term=azo2330
azo2331	azo2331	exbD5	exbD5	2563476	2563895	+	putative biopolymer transport protein ExbD	Putative biopolymer transport protein exbD. Homology to exbD of E. coli of 34%25. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership	gene	gene2379	http://www.ncbi.nlm.nih.gov/gene/?term=azo2331
azo2332	azo2332	exbD6	exbD6	2563914	2564342	+	putative biopolymer transport protein ExbD	Putative biopolymer transport protein. Homology to exbD1 of X. campestris of 31%25. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership	gene	gene2380	http://www.ncbi.nlm.nih.gov/gene/?term=azo2332
azo2333	azo2333		azo2333	2564464	2565738	+	membrane fusion protein	HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q7WF48 (49%25 identity)%3B TREMBL:Q881X8 (49%25 identity). Pfam (PF00529): HlyD family secretion protein. TMHMM reporting one transmembrane helix. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership	gene	gene2381	http://www.ncbi.nlm.nih.gov/gene/?term=azo2333
azo2334	azo2334		azo2334	2565735	2568839	+	RND efflux transporter%2C permease protein	AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2CSWISSPROT:P76399 (44%25 identity). Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TMHMM reporting 10 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~High confidence in function and specificity	gene	gene2382	http://www.ncbi.nlm.nih.gov/gene/?term=azo2334
azo2335	azo2335		azo2335	2568839	2571973	+	RND efflux transporter%2C permease protein	AcrB/AcrD/AcrF family member. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q881X7 (44%25 identity)%3B SWISSPROT:P76399 (48%25 identity). InterPro (IPR001036): Acriflavin resistance protein Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TMHMM reporting 10 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. HTH reporting nucleic acid binding motif.%3B~Specificity unclear	gene	gene2383	http://www.ncbi.nlm.nih.gov/gene/?term=azo2335
azo2336	azo2336	opcM1	opcM1	2572063	2573526	+	putative outer membrane efflux protein	Putative outer membrane efflux protein. Homology to opcM of B. cepacia of 36%25. Component of an efflux system that confers multiple antibiotic resistence. Pfam: outer membrane efflux protein signal peptide no TMHs%3B~Family membership	gene	gene2384	http://www.ncbi.nlm.nih.gov/gene/?term=azo2336
azo2337	azo2337		azo2337	2573541	2574254	+	conserved hypothetical hydrogenase cytochrome b-type subunit	Conserved hypothetical hydrogenase cytochrone b-type subunit. Homology to C. vinosum of 48%25 (trembl|Q46471). Involved in electron transfer from hydrogen to oxygen. Pfam: Nickel-dependent hydrogenase b-type cytochrome. probable signal peptide. probable 4 TMHs%3B~Family membership	gene	gene2385	http://www.ncbi.nlm.nih.gov/gene/?term=azo2337
azo2338	azo2338	prc	prc	2574305	2576401	+	tail-specific penicillin-binding protein protease	Tail-specific protease precursor (EC 3.4.21.102) (Protease Re) (PRC protein) (C-terminal processing peptidase). prc: carboxyl-terminal protease%3B~High confidence in function and specificity	gene	gene2386	http://www.ncbi.nlm.nih.gov/gene/?term=azo2338
azo2339	azo2339	cycA2	cycA2	2577133	2577597	-	probable cytochrome c'	Probable cytochrome c'. Homology to cycA of C. vinosum of 48%25 (sprot|CYCP_CHRVI). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. InterPro: Cytochrome c class II (IPR002321) Pfam: Cytochrome c singal peptide no TMHs%3B~Function unclear	gene	gene2387	http://www.ncbi.nlm.nih.gov/gene/?term=azo2339
azo2340	azo2340		azo2340	2577644	2578648	-	dienelactone hydrolase family protein	Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway%2C TREMBL:Q8XBV0 (48%25 identity)%3B TREMBL:Q8EI44 (45%25 identity). InterPro (IPR002925): Dienelactone hydrolase. InterPro (IPR000379): Esterase/lipase/thioesterase. Pfam (PF01738): Dienelactone hydrolase family. SignalP predicting signal peptide.%3B~Family membership	gene	gene2388	http://www.ncbi.nlm.nih.gov/gene/?term=azo2340
azo2341	azo2341	gnl	gnl	2578692	2579669	-	putative gluconolactonase precursor	Gluconolactonase precursor (D-glucono-delta-lactone lactonohydrolase).HYDROLYZES THE GLUCONOLACTONE FORMED BY GLUCOSE-FRUCTOSE OXIDOREDUCTASE AND THAT FORMED IN AEROBIC CONDITIONS BY THE GLUCOSE DEHYDROGENASE PRESENT. 30%25 SMP-30. Pfam:PF03758%3B SMP-30%3B 1. Signal peptide: present.%3B~High confidence in function and specificity	gene	gene2389	http://www.ncbi.nlm.nih.gov/gene/?term=azo2341
azo2342	azo2342	cc41	cc41	2579886	2580566	-	putative cytochrome c4	Putative cytochrome c4. Homology to cc4 of A. vinelandii of 34%25 (sprot|CYC4_AZOVI). Diheme%2C high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems. Pfam: cytochrome C signal peptide no TMHs%3B~Family membership	gene	gene2390	http://www.ncbi.nlm.nih.gov/gene/?term=azo2342
azo2343	azo2343	bcp3	bcp3	2580648	2581226	-	conserved hypothetical bacterioferritin comigratory protein	Conserved hypothetical bacterioferritin comigratory protein homolog. Homology to bp1307 of B. pertussis of 43%25 (trembl|Q7VYL2). Pfam: AhpC/TSA family. signal peptide. no TMHs%3B~Family membership	gene	gene2391	http://www.ncbi.nlm.nih.gov/gene/?term=azo2343
azo2344	azo2344		azo2344	2581238	2581618	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene2392	http://www.ncbi.nlm.nih.gov/gene/?term=azo2344
azo2345	azo2345		azo2345	2581721	2583178	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RB5328 of Rhodopirellula baltica of 47%25 (trembl|Q7US09(SRS)). Signal Peptide present. No TMH reported Present. Has PF07394%2C Protein of unknown function (DUF1501)%3BIPR010869%3BThis family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.%3B~Conserved hypothetical protein	gene	gene2393	http://www.ncbi.nlm.nih.gov/gene/?term=azo2345
azo2346	azo2346		azo2346	2583205	2585517	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RB6288 of Rhodopirellula baltica of 30%25 (trembl|Q7UQJ4(SRS)). No domains predicted. No TMHs. Signal P reporting signal peptide.%3B~Conserved hypothetical protein	gene	gene2394	http://www.ncbi.nlm.nih.gov/gene/?term=azo2346
azo2347	azo2347	fyuA	fyuA	2586159	2588936	+	putative TonB-dependent receptor	Yersinia enterocolitica%2Ciron-repressible outer membrane protein%2C FyuA. FyuA:RECEPTOR FOR THE BACTERIOCIN PESTICIN AND FOR THE SIDEROPHORE YERSINIABACTIN. TonB-dependent outer membrane receptor.%3B~Function unclear	gene	gene2395	http://www.ncbi.nlm.nih.gov/gene/?term=azo2347
azo2348	azo2348		azo2348	2588979	2589458	-	Hypothetical Rhodanese sulfurtransferase protein	Similar to a Rhodanese-related sulfurtransferase%2CPspE. %2C PspE:Thiosulphate sulphurtransferase ( 2.8.1.1) is an enzyme which catalyzes the transfer of the sulphane atom of thiosulphate to cyanide%2C to form sulphite and thiocyanate.Involved in cyanide detoxification.%2C Signal peptide present.%2C%3B~Function unclear	gene	gene2396	http://www.ncbi.nlm.nih.gov/gene/?term=azo2348
azo2349	azo2349		azo2349	2589804	2591366	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA0435 of Pseudomonas aeruginosa of 35%25 (trembl|Q9I682(SRS)). No domains predicted. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene2397	http://www.ncbi.nlm.nih.gov/gene/?term=azo2349
azo2350	azo2350		azo2350	2591415	2591855	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to orf of Desulfovibrio vulgaris of 41%25 (tremblnew|AAS97780(SRS)). No domain predicted. No TMHs. No signal peptide.	gene	gene2398	http://www.ncbi.nlm.nih.gov/gene/?term=azo2350
azo2351	azo2351	arsC1	arsC1	2592005	2592502	+	putative arsenate reductase (glutaredoxin)	Putative arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier)%2C%3B~Family membership	gene	gene2399	http://www.ncbi.nlm.nih.gov/gene/?term=azo2351
azo2352	azo2352	arsR	arsR	2592559	2592918	+	putative regulatory protein ArsR family	Putative regulatory protein arsR-family arsenical resistance operon repressor%2C smtB from Synechococcus PCC 7942%2C which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein%3B cadC%2C a protein required for cadmium-resistance%3B and hypothetical protein yqcJ from Bacillus subtilis.%3B~Family membership	gene	gene2400	http://www.ncbi.nlm.nih.gov/gene/?term=azo2352
azo2353	azo2353	arsC2	arsC2	2592915	2593328	+	putative arsenate reductase (glutaredoxin)	Putative arsenate reductase%2C%3B~Family membership	gene	gene2401	http://www.ncbi.nlm.nih.gov/gene/?term=azo2353
azo2354	azo2354	arsB	arsB	2593338	2594402	+	putative arsenical-resistance protein	Putative arsenical-resistance protein arsB%2C%3B~Family membership	gene	gene2402	http://www.ncbi.nlm.nih.gov/gene/?term=azo2354
azo2355	azo2355	arsD	arsD	2594417	2594788	+	arsenical resistance operon trans-acting repressor	Arsenical resistance operon trans-acting repressor ArsD%2C%3B~Family membership	gene	gene2403	http://www.ncbi.nlm.nih.gov/gene/?term=azo2355
azo2356	azo2356	arsA	arsA	2594802	2596550	+	arsenite-transporting ATPase	Arsenite-transporting ATPase%2C%3B~High confidence in function and specificity	gene	gene2404	http://www.ncbi.nlm.nih.gov/gene/?term=azo2356
azo2357	azo2357		azo2357	2596593	2598086	-	probable amidase	Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-) (Glu-ADT subunit A). Furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu- tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).%3B~Family membership	gene	gene2405	http://www.ncbi.nlm.nih.gov/gene/?term=azo2357
azo2358	azo2358		azo2358	2598201	2599088	-	hypothetical AraC-family transcriptional regulator	Hypothetical AraC-family transcriptional regulator	gene	gene2406	http://www.ncbi.nlm.nih.gov/gene/?term=azo2358
azo2359	azo2359		azo2359	2599193	2599573	-	oxaloacetate tautomerase	oxaloacetate tautomerase%2C41%25 identity to TrEMBL%3BO32183%3BYusQ protein [yusQ] [Bacillus subtilis subsp. subtilis str. 168]. Has PF01361%3B(IPR004370)%3BTautomerase enzyme%3BThis family includes the enzyme 4-oxalocrotonate tautomerase Q01468 that catalyses the ketonisation of 2-hydroxymuconate to 2-oxo-3-hexenedioate. No Signal peptide or TMH reported present.%3B~Conserved hypothetical protein	gene	gene2407	http://www.ncbi.nlm.nih.gov/gene/?term=azo2359
azo2360	azo2360		azo2360	2599708	2600517	+	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear	gene	gene2408	http://www.ncbi.nlm.nih.gov/gene/?term=azo2360
azo2361	azo2361		azo2361	2600495	2601667	-	putative acetyl esterase	Acetyl esterase:-has an esterase activity. triacetyl glycerol (triacetin) is a substrate of the enzyme. Entry name SWISSPROT:AES_ECOLI Prim. accession # P23872 Identities %3D 57/229 (24%25) InterPro IPR002168%3B Lipolytic_enzyme. IPR000379%3B Ser_estrs. Pfam :-Thioesterase Prediction: Non-secretory protein Signal peptide probability: 0.233 Number of predicted TMHs: 0%3B~Family membership	gene	gene2409	http://www.ncbi.nlm.nih.gov/gene/?term=azo2361
azo2362	azo2362		azo2362	2601814	2603754	-	putative sensor kinase/response regulator hybrid protein	Putative sensor kinase/response regulator hybrid protein%2C%3B~Specificity unclear	gene	gene2410	http://www.ncbi.nlm.nih.gov/gene/?term=azo2362
azo2363	azo2363	sbp2	sbp2	2604007	2605017	-	putative periplasmic sulfate-binding protein	Sulfate-binding protein precursor%2C Sbp. 69%25 Sulphate_bind. IPR005669%3B Thiosulph_bind.InterPro: Prokaryotic sulfate-/thiosulfate-binding protein. TIGRFAMs:TIGR00971%3B 3a0106s03%3B 1. Belongs to the prokaryotic sulfate binding protein family. In other bacteria Sbp is a periplasmic component of an ABC transport system.%3B~High confidence in function and specificity	gene	gene2411	http://www.ncbi.nlm.nih.gov/gene/?term=azo2363
azo2364	azo2364		azo2364	2605073	2605756	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bll5801 of B. japonicum of 57%25 (trembl|Q89I38(SRS)). No domains predicted. Signal P reporting signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene2412	http://www.ncbi.nlm.nih.gov/gene/?term=azo2364
azo2365	azo2365	groES2	groES2	2606215	2606502	+	chaperonin GroES	Chaperonin GroES. Homology to groES of B. japonicum of 58%25 (sprot|CH11_BRAJA). Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. InterPro: Chaperonins cpn10 (10 Kd subunit)(IPR001476) Pfam: chaperonin 10 Kd subunit no signal peptide no TMH%3B~High confidence in function and specificity	gene	gene2413	http://www.ncbi.nlm.nih.gov/gene/?term=azo2365
azo2366	azo2366	groEL3	groEL3	2606556	2608199	+	chaperonin GroEL	Chaperonin GroEL. Homology to groEL of B. japonicum of 65%25 (SWISSPROT:CH61_BRAJA). Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity). Pfam: TCP-1/cpn60 chaperonin family no TMHs%3B~High confidence in function and specificity	gene	gene2414	http://www.ncbi.nlm.nih.gov/gene/?term=azo2366
azo2367	azo2367		azo2367	2608274	2609170	-	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~Function unclear	gene	gene2415	http://www.ncbi.nlm.nih.gov/gene/?term=azo2367
azo2368	azo2368		azo2368	2609291	2610286	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RSc3335 of Ralstonia solanacearum of 52%25 (gnl|keqq|rso:RS02569(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene2416	http://www.ncbi.nlm.nih.gov/gene/?term=azo2368
azo2369	azo2369		azo2369	2610283	2610723	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Pflu02000368 of Pseudomonas fluorescens of 34%25 (gi|48732319|ref|ZP_00266062.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene2417	http://www.ncbi.nlm.nih.gov/gene/?term=azo2369
azo2370	azo2370		azo2370	2610763	2611167	+	hypothetical secreted protein	Hypothetical secreted protein. No domains predicted. No TMHs. Signal Peptide present. Weak homology with hits in the database.	gene	gene2418	http://www.ncbi.nlm.nih.gov/gene/?term=azo2370
azo2371	azo2371		azo2371	2611545	2611892	-	partiell 30S ribosomal protein S4%2C truncated	30S ribosomal protein S4%2C truncated. Homology of aa 1 to 108 with rpsD of N. europaea of 67%25 (sprot|RS4B_NITEU(SRS)). With S5 and S12 plays an important role in translational accuracy (By similarity). Pfam: Ribosomal protein S4/S9 n-terminal domain. no signal peptide. no TMHs%3B~Family membership	gene	gene2419	http://www.ncbi.nlm.nih.gov/gene/?term=azo2371
azo2372	azo2372		azo2372	2611911	2612165	-	hypothetical secreted protein	Hypothetical secreted protein. No homology with the data bank. No domains predicted. Signal peptide present. No TMHs	gene	gene2420	http://www.ncbi.nlm.nih.gov/gene/?term=azo2372
azo2373	azo2373	fecI	fecI	2612445	2612945	+	putative sigma-70 factor%2C ECF subfamily	FecI: belongs to the extracytoplasmic-function (ECF) sigma factor%2C which represent a subgroup of the sigma 70 family. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Involved in iron metabolism.%3B~High confidence in function and specificity	gene	gene2421	http://www.ncbi.nlm.nih.gov/gene/?term=azo2373
azo2374	azo2374	fecR	fecR	2612948	2613934	+	putative transmembrane sensor	FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm. Involved in iron metabolism.%3B~High confidence in function and specificity	gene	gene2422	http://www.ncbi.nlm.nih.gov/gene/?term=azo2374
azo2375	azo2375	fecA	fecA	2614041	2616434	+	putative ferric-citrate TonB-dependent receptor	Ferric-citrate outer membrane receptor%2CFecA.Involved in the recognition and internalization of ferric-citrate in E.coli. SPECIFIC RECEPTOR FOR THE SIDEROPHORE FERRIC PSEUDOBACTIN 358. InterPro: TonB-dependent receptor protein%3B~High confidence in function and specificity	gene	gene2423	http://www.ncbi.nlm.nih.gov/gene/?term=azo2375
azo2376	azo2376		azo2376	2616506	2617735	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE0537 of Nitrosomonas europaea of 40%25 (trembl|Q82WX0(SRS)). no domains predicted. signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene2424	http://www.ncbi.nlm.nih.gov/gene/?term=azo2376
azo2377	azo2377		azo2377	2618005	2618457	-	conserved hypothetical protein	Similar to Rhodanese%2C a sulphurtransferase involved in cyanide detoxification. Non-secretory protein. Probable Hypothetical protein RP600.%3B~Function unclear	gene	gene2425	http://www.ncbi.nlm.nih.gov/gene/?term=azo2377
azo2378	azo2378		azo2378	2618632	2619291	+	conserved hypothetical protein	Hypothetical protein%2C 38%25 identity (50%25 similarity) to TrEMBL%3BQ87X35 Has PF04336%2C Protein of unknown function%2CDUF479%3BIPR007431%2CThis family includes several bacterial proteins of uncharacterised function.%3B~Function unclear	gene	gene2426	http://www.ncbi.nlm.nih.gov/gene/?term=azo2378
azo2379	azo2379		azo2379	2619273	2620175	-	conserved hypothetical protein	Hypothetical protein%2C 44%25 identity (54%25 similarity) to TrEMBL%3BQ82TM9. Has PF01636%3BPhosphotransferase enzyme family%3BIPR002575%2CAPH_trans%3BThis family consists of bacterial antibiotic resistance proteins%2C which confer resistance to various aminoglycosides they include:-aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. Has PF03881%2CFructosamine kinase%3BThis family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterised but probably have a similar or identical function.%3B~Specificity unclear	gene	gene2427	http://www.ncbi.nlm.nih.gov/gene/?term=azo2379
azo2380	azo2380		azo2380	2620360	2621466	+	glycosyltransferase	Glycosyltransferase%3B~Specificity unclear	gene	gene2428	http://www.ncbi.nlm.nih.gov/gene/?term=azo2380
azo2381	azo2381		azo2381	2621450	2622997	+	dolichyl-phosphate-mannose-protein mannosyltransferase	Conserved hypothetical protein. Extremely weak homology with hits in the Database spanning the entire length of protein. Has PF02366%2C Dolichyl-phosphate-mannose-protein mannosyltransferase%3B IPR003342%2CGlyco_trans_39:This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins. These proteins are responsible for O-linked glycosylation of proteins%2C they catalyse the reaction:-Dolichyl phosphate D-mannose + protein <%3D> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Q94891 Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to STT3. TMHMM2 reporting 2 TMH's present. Signal peptide not present.%3B~Function unclear	gene	gene2429	http://www.ncbi.nlm.nih.gov/gene/?term=azo2381
azo2382	azo2382		azo2382	2623216	2624124	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to TdenA01002104 of Thiobacillus denitrificans of 56%25 (gi|52006510|ref|ZP_00333890.1|(NBCI ENTREZ)). No domains predicted. Signal P repoting a signal peptide present. NO TMH being present.%3B~Conserved hypothetical protein	gene	gene2430	http://www.ncbi.nlm.nih.gov/gene/?term=azo2382
azo2383	azo2383		azo2383	2624136	2624690	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsp0720 of R. solanacearum of 43%25 (trembl|Q8XRW1(SRS)). Pfam: FMN_binding domain. This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins. Siganl peptide. no TMHs	gene	gene2431	http://www.ncbi.nlm.nih.gov/gene/?term=azo2383
azo2384	azo2384		azo2384	2624734	2625561	+	conserved hypothetical ApbE family protein	Conserved hypothetical ApbE family protein. Homology to so1090 of S. oneidensis of 43%25 (trembl|Q8EHX0). Pfam: ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. no signal. peptide no TMH%3B~Family membership	gene	gene2432	http://www.ncbi.nlm.nih.gov/gene/?term=azo2384
azo2385	azo2385		azo2385	2625563	2626036	+	hypothetical membrane protein	Hypothetical membrane protein. No homology of the entire protein to the data bank. No domains predicted. signal peptide. 3 TMHs	gene	gene2433	http://www.ncbi.nlm.nih.gov/gene/?term=azo2385
azo2386	azo2386		azo2386	2626263	2626706	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to BB4221 of Bordetella bronchiseptica of 32%25 (trembl|Q7WFQ0). Has PF07331%2C Protein of unknown function (DUF1468)%3BIPR009936%3BThis family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene2434	http://www.ncbi.nlm.nih.gov/gene/?term=azo2386
azo2387	azo2387		azo2387	2626714	2628201	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to an orf of R. palustris of 63%25 (tremblnew|CAE27761(SRS)). Has PF01970%2C Integral membrane protein DUF112%3BIPR002823:Members of this prokaryotic family have no known function. no signal peptide. 10 TMHs%3B~Conserved hypothetical protein	gene	gene2435	http://www.ncbi.nlm.nih.gov/gene/?term=azo2387
azo2388	azo2388		azo2388	2628235	2628873	+	hypothetical membrane protein	Hypothetical membrane protein. no homology of the entire protein to the data bank. no domain predicted. no signal peptide. 4 TMHs	gene	gene2436	http://www.ncbi.nlm.nih.gov/gene/?term=azo2388
azo2389	azo2389	ssuF	ssuF	2628910	2629125	-	molybdenum-pterin binding protein	Probable Molybdenum-pterin binding protein II. Organosulfonate utilization protein SsuF InterPro: Molybdenum-pterin binding domain TIGRFAM: Mop: molybdenum-pterin binding domain%3B~High confidence in function and specificity	gene	gene2437	http://www.ncbi.nlm.nih.gov/gene/?term=azo2389
azo2390	azo2390		azo2390	2629358	2629729	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03001711 of Dechloromonas aromatica of 36%25 (gi|53730477|ref|ZP_00348804.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene2438	http://www.ncbi.nlm.nih.gov/gene/?term=azo2390
azo2391	azo2391	tauA	tauA	2630041	2631066	+	putative sulfonate transport system%2C periplasmic component	Part of the ABC transporter complex tauABC involved in taurine as a sulfur source import. Similar to the putative aliphatic sulfonates periplasmic-binding protein tauA in E.coli. Probably also involved in nitrate and bicarbonate transport.%3B~Function unclear	gene	gene2439	http://www.ncbi.nlm.nih.gov/gene/?term=azo2391
azo2392	azo2392	tauB	tauB	2631101	2631892	+	putative sulfonate transport system%2C ATP-binding protein	Part of the ABC transporter complex tauABC involved in taurine import as a sulfur source.Probably responsible for energy coupling to the transport system.Similar to the aliphatic sulfonate transport membrane protein%2C tauB in E.coli. Probably also involved in nitrate and bicarbonate transport.%3B~High confidence in function and specificity	gene	gene2440	http://www.ncbi.nlm.nih.gov/gene/?term=azo2392
azo2393	azo2393	tauC	tauC	2632087	2632899	+	putative sulfonate transport system%2C permease protein	Part of the ABC transporter complex tauABC involved in taurine import as sulfur source. Probably responsible for the translocation of the substrate across the membrane.Similar to the aliphatic sulfonate permease protein%2C tauC in E.coli. Probably also involved in nitrate and bicarbonate transport.%3B~High confidence in function and specificity	gene	gene2441	http://www.ncbi.nlm.nih.gov/gene/?term=azo2393
azo2394	azo2394		azo2394	2632917	2633645	+	hypothetical membrane protein	Hypothetical membrane protein. Homology to COG2143 from 114 aa to 228 aa. InterPro: Thioredoxin (IPR006662). no signal peptide. 1 TMH	gene	gene2442	http://www.ncbi.nlm.nih.gov/gene/?term=azo2394
azo2395	azo2395	phaE	phaE	2633703	2635040	+	Phenylacetate--CoA ligase	Phenylacetate-coenzyme A ligase (PA-CoA ligase).Coenzyme F390 synthase. CATALYZES THE ACTIVATION OF PHENYLACETIC ACID TO PHENYLACETYL-COA. InterPro: AMP-dependent synthetase and ligase%3B~High confidence in function and specificity	gene	gene2443	http://www.ncbi.nlm.nih.gov/gene/?term=azo2395
azo2396	azo2396		azo2396	2635527	2637713	+	putative TonB-dependent receptor	Putative outer membrane TonB-dependent receptor protein. 43%25 TonB_receptor. Pfam:PF00593%3B TonB_dep_Rec%3B 1.%3B~Function unclear	gene	gene2444	http://www.ncbi.nlm.nih.gov/gene/?term=azo2396
azo2397	azo2397		azo2397	2637720	2638544	-	conserved hypothetical signaling protein	Conserved hypothetical signaling protein%2C%3B~Conserved hypothetical protein	gene	gene2445	http://www.ncbi.nlm.nih.gov/gene/?term=azo2397
azo2398	azo2398		azo2398	2638757	2639365	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc1344 of R. solanacearum of 42%25 (trembl|Q8XZQ1). no domains predicted. no signal peptide. no TMHs	gene	gene2446	http://www.ncbi.nlm.nih.gov/gene/?term=azo2398
azo2399	azo2399	cysK	cysK	2639458	2640438	+	cysteine synthase A	Cysteine synthase A%2C%3B~High confidence in function and specificity	gene	gene2447	http://www.ncbi.nlm.nih.gov/gene/?term=azo2399
azo2400	azo2400		azo2400	2640828	2643044	+	putative TonB-dependent receptor protein	Putative TonB outer membrane receptor protein.31%25 TonB_boxC. Pfam:PF00593%3B TonB_dep_Rec%3B 1. Signal peptide present.%3B~Function unclear	gene	gene2448	http://www.ncbi.nlm.nih.gov/gene/?term=azo2400
azo2401	azo2401		azo2401	2643054	2643623	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsp0812 of R. solanacearum of 30%25 (trembl|Q8XRL9). no damians predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2449	http://www.ncbi.nlm.nih.gov/gene/?term=azo2401
azo2402	azo2402	barA	barA	2643620	2646658	+	putative sensor-regulator protein	Putative sensor-regulator protein%2C%3B~Specificity unclear	gene	gene2450	http://www.ncbi.nlm.nih.gov/gene/?term=azo2402
azo2403	azo2403	wspR2	wspR2	2646655	2647560	+	probable two-component response regulator	Probable two-component response regulator%2C%3B~High confidence in function and specificity	gene	gene2451	http://www.ncbi.nlm.nih.gov/gene/?term=azo2403
azo2404	azo2404		azo2404	2647703	2649856	+	hypothetical secreted protein	Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. no TMHs	gene	gene2452	http://www.ncbi.nlm.nih.gov/gene/?term=azo2404
azo2405	azo2405	ohr	ohr	2649868	2650305	-	probable organic hydroperoxide resistance protein	Probable organic hydroperoxide resistance protein. Homology to ohr of X. campestris of 50%25 (SWISSPROT:OHR_XANAC). Organic hydroperoxide detoxification protein. Confers increased resistance to tert-butyl hydroperoxide killing. InterPro: OsmC-like protein (IPR003718) Pfam: OsmC-like protein no signal peptide no TMH%3B~High confidence in function and specificity	gene	gene2453	http://www.ncbi.nlm.nih.gov/gene/?term=azo2405
azo2406	azo2406		azo2406	2650430	2654014	-	conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase	Conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase. Homology to bb4375 of B. bronchiseptica (trembl|Q7WFA5). CATALYZES THE FERREDOXIN-DEPENDENT OXIDATIVE DECARBOXYLATION OF ARYLPYRUVATES (BY SIMILARITY). Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2454	http://www.ncbi.nlm.nih.gov/gene/?term=azo2406
azo2407	azo2407	bkdR	bkdR	2654233	2654715	+	bkd operon transcriptional regulator	Bkd operon transcriptional regulator%2C similarity to SWISSPROT: (38%25 Pseudomonas putida%2C bkd operon transcriptional regulator BdkR) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene2455	http://www.ncbi.nlm.nih.gov/gene/?term=azo2407
azo2408	azo2408		azo2408	2654882	2657899	+	hypothetical sensor protein	Hypothetical sensor protein%2C%3B~Conserved hypothetical protein	gene	gene2456	http://www.ncbi.nlm.nih.gov/gene/?term=azo2408
azo2409	azo2409		azo2409	2657913	2659973	-	conserved hypothetical sodium:solute sympoter	Conserved hypothetical sodium:solute sympoter. Homology to bb3915 of B. bronchiseptica of 57%25 (trembl|Q7WCM0). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force%2C SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars%2C amino acids%2C nucleosides%2C inositols%2C vitamins%2Curea or anions%2C depending on the system. Tigrfam: sss: SSS sodium solute transporter superfamily. Pfam: Sodium:solute symporter family. signal peptide. 13 TMHS%3B~Family membership	gene	gene2457	http://www.ncbi.nlm.nih.gov/gene/?term=azo2409
azo2410	azo2410		azo2410	2660014	2662218	-	DNA polymerase III epsilon chain-like protein	DNA polymerase III epsilon chain-like protein (EC 2.7.7.7). DNA POLYMERASE III IS A COMPLEX MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THE EPSILON SUBUNIT CONTAIN THE EDITING FUNCTION AND IS A PROOFREADING 3-5 EXONUCLEASE (BY SIMILARITY). dnaq: DNA polymerase III epsilon sub%3B~Family membership	gene	gene2458	http://www.ncbi.nlm.nih.gov/gene/?term=azo2410
azo2411	azo2411	yycF	yycF	2662346	2662720	-	transcriptional regulatory protein	Transcriptional regulatory protein yycF. Member of the two-component regulatory system yycG/yycF involved in the regulation of the ftsAZ operon. Binds to the ftsAZ P1 promoter sequence. Similar to SWISSPROT: sprot|YYCF_BACSU (50%25 Bacillus subtilis%2C transcriptional regulatory protein YycF) / sprot|PHOP_BACSU (47%25 Bacillus subtilis%2C alkaline phosphatase synthesis transcriptional regulatory protein PhoP) InterPro: IPR001789 Response_reg. Pfam: PF00072 Response_reg.%3B~Specificity unclear	gene	gene2459	http://www.ncbi.nlm.nih.gov/gene/?term=azo2411
azo2412	azo2412		azo2412	2662752	2665499	-	probable two-component system sensor protein	Sensor histidine kinase mtrB (EC 2.7.3.-). Member of the two-component regulatory system mtrA/mtrB. Seems to function as a membrane-associated protein kinase that phosphorylates mtrA in response to environmental signals (By similarity). TREMBLnew:AAS80811%3B TREMBL:Q8PEZ5%2C 42%25 identity%2C 59%25 similarity%3B Pfam: Histidine kinase _%2CPhosphoacceptor domain. TIGRFAM: sss: sodium solute transporter sup. TMHMM predicted transmembrane helices. sss: SSS sodium solute transporter sup%3B~Specificity unclear	gene	gene2460	http://www.ncbi.nlm.nih.gov/gene/?term=azo2412
azo2413	azo2413		azo2413	2665499	2665696	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homolgy to ttc0464 of T. thermophilus of 46%25 (tremble:Q72K63). no domains predicted. singal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene2461	http://www.ncbi.nlm.nih.gov/gene/?term=azo2413
azo2414	azo2414	acsB	acsB	2665962	2667926	-	probable acetyl-coenzyme A synthetase	Catalytic activity :- atp + acetate + coa %3D amp + diphosphate + acetyl-coa. Entry name SWISSPROT:ACSA_ECOLI Prim. accession # P27550 Identities %3D 330/633 (52%25) InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 1. Number of predicted TMHs: 0%3B~Family membership	gene	gene2462	http://www.ncbi.nlm.nih.gov/gene/?term=azo2414
azo2415	azo2415	fumB	fumB	2668208	2669899	+	putative fumarate hydratase	Putative fumarate hydratase. Homology to fumB of E. coli of 25%25 (sprot|FUMB_ECOLI). It functions in the generation of fumarate for use as an anaerobic electron acceptor. Tigrfam: ttdA_fumA_fumB: hydro-lyases Fe-S type%2Ctartrate/fumarate subfamily%2C alpha region%3B ttdB_fumA_fumB: hydro-lyases Fe-S type%2C tartrate/fumarate subfamily%2C beta region no signal peptide no TMHs%3B~Family membership	gene	gene2463	http://www.ncbi.nlm.nih.gov/gene/?term=azo2415
azo2416	azo2416		azo2416	2669865	2670155	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2464	http://www.ncbi.nlm.nih.gov/gene/?term=azo2416
azo2417	azo2417	nnrS	nnrS	2670306	2671496	-	putative heme-Cu-containing membrane protein	NnrS is a putative heme-Cu protein and a member of the short-chain dehydrogenase family%2C probably involved in the nitric oxide metabolism. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase. 40%25 NnrS. TMhelix:10 Pfam:PF05940%3B NnrS%3B 1.%3B~Function unclear	gene	gene2465	http://www.ncbi.nlm.nih.gov/gene/?term=azo2417
azo2418	azo2418	gapB	gapB	2671716	2672762	+	putative D-erythrose 4-phosphate dehydrogenase	D-erythrose 4-phosphate dehydrogenase(E4PDH)%2C GapB protein. Could play a role in pyridoxal 5-phosphate synthesis.Involved in the reaction: d-erythrose 4-phosphate + nad(+) %3D 4-phosphoerythronate + nadh. 51%25 E4PD_g-proteo.IPR000173%3B GAP_dhdrogenase. Pfam:PF00044%3B gpdh%3B 1.PF02800%3B gpdh_C%3B 1. TIGR00274: glucokinase regulator-relate. TIGRFAMs:TIGR01532%3B E4PD_g-proteo%3B 1.%3B~High confidence in function and specificity	gene	gene2466	http://www.ncbi.nlm.nih.gov/gene/?term=azo2418
azo2419	azo2419	nahR1	nahR1	2672763	2673671	-	putative LysR-type transcriptional regulator NahR	LysR-type transcriptional regulator NahR. Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes. Belongs to the LysR family of transcriptional regulators. Similar to SWISSPROT: sprot|NAHR_PSEPU (40%25 Pseudomonas putida%2C hth-type transcriptional activator NahR) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~Specificity unclear	gene	gene2467	http://www.ncbi.nlm.nih.gov/gene/?term=azo2419
azo2420	azo2420	nagI	nagI	2673841	2674878	+	Gentisate 1%2C2-dioxygenase	Involved in catabolism of naphthalene via gentisate to fumarate and pyruvate. NagI is a gentisate 1%2C2-dioxygenase which converts gentisate to maleylpyruvate. Similar to TREMBL:O86041 (66%25 identity)%3B TREMBL:Q8X655 (30%25 identity)%3B TREMBL:Q8Y0F7 (33%25 identity).%3B~High confidence in function and specificity	gene	gene2468	http://www.ncbi.nlm.nih.gov/gene/?term=azo2420
azo2421	azo2421	nagK	nagK	2674933	2675643	+	fumarylpyruvate hydrolase	Involved in catabolism of naphthalene via gentisate to fumarate and pyruvate. NagK is a fumarylpyruvate hydrolase which hydrolyzes fumarylpyruvate to fumarate and pyruvate. Similar to TREMBL:O86042 (67%25 identity)%3B TREMBL:O07877 (63%25 identity)%3B TREMBL:Q8G387 (50%25 identity). Pfam (PF01557): Fumarylacetoacetate (FAA) hydrolase family.%3B~High confidence in function and specificity	gene	gene2469	http://www.ncbi.nlm.nih.gov/gene/?term=azo2421
azo2422	azo2422	nahG	nahG	2675686	2676879	+	putative salicylate 1-monooxygenase	Salicylate hydroxylase (EC 1.14.13.1) (Salicylate 1-monooxygenase). Similar to TREMBL:Q8Z5B1 (62%25 identity)%3B TREMBL:Q8X657 (62%25 identity)%3B TREMBL:Q8ZNM3 (62%25 identity). Pfam (PF01360): Monooxygenase. TMHMM reporting one transmembrane helix.%3B~High confidence in function and specificity	gene	gene2470	http://www.ncbi.nlm.nih.gov/gene/?term=azo2422
azo2423	azo2423	nagL1	nagL1	2676985	2677626	+	maleylpyruvate isomerase	maleylpyruvate isomerase. Homology to nogL of Ralstonia sp U of 73%25 (AAD12621) NagL is a reduced glutathione-dependent maleylpyruvate isomerase catalyzing the isomerization of maleylpyruvate to fumarylpyruvate. InterPro: Glutathione S-transferase N terminus (IPR004045) Pfam: Glutathione S-transferase%2C N-terminale domaine no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2471	http://www.ncbi.nlm.nih.gov/gene/?term=azo2423
azo2424	azo2424	dctP3	dctP3	2677699	2678685	+	putative C4-dicarboxylate-binding periplasmic protein	TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 23%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present.%3B~Specificity unclear	gene	gene2472	http://www.ncbi.nlm.nih.gov/gene/?term=azo2424
azo2425	azo2425	dctQ4	dctQ4	2679037	2679540	+	putative TRAP-type C4-dicarboxylate transport system%2C small permease component	TRAP-type C4-dicarboxylate transport system%2C small permease component. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 22%25 DctM.IPR007387%3B DctQ.IPR000252%3B DedA.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF04290%3B DctQ%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1.%3B~Specificity unclear	gene	gene2473	http://www.ncbi.nlm.nih.gov/gene/?term=azo2425
azo2426	azo2426	dctM4	dctM4	2679537	2680814	+	putative TRAP-type C4-dicarboxylate transport system%2C large permease	Similar to a putative large integral C4-dicarboxylate membrane transport protein from W. succinogenes.DctM: TRAP dicarboxylate transporter. TREMBL:Q9ZEJ2 InterPro:IPR010656%3B DctM.IPR000252%3B DedA.IPR000524%3B HTH_GntR.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. TMHelix: 12. Signal peptide:present.%3B~Specificity unclear	gene	gene2474	http://www.ncbi.nlm.nih.gov/gene/?term=azo2426
azo2427	azo2427		azo2427	2680831	2681421	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to BB1720 of Bordetella bronchiseptica of 32%25 (trembl|Q7WLM5). Has PF03992%2C Antibiotic biosynthesis monooxygenase%3BIPR007138%3BThis domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 (Q9X9W3) is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue. TMHMM2 reporting 2 TMH's Present. No Signal Peptide present.%3B~Conserved hypothetical protein	gene	gene2475	http://www.ncbi.nlm.nih.gov/gene/?term=azo2427
azo2428	azo2428		azo2428	2681551	2682474	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to an orf of T. aromatica of 48%25 (trembl|Q7B0A2). no domains. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2476	http://www.ncbi.nlm.nih.gov/gene/?term=azo2428
azo2429	azo2429	nahJ	nahJ	2682655	2682846	-	4-oxalocrotonate tautomerase	4-oxalocrotonate tautomerase (EC 5.3.2.-) (4-OT). Catalyzes the ketonization of 2-hydroxymuconate stereoselectively to yield 2-oxo-3-hexenedioate. SPROT:Q9RHM8: 80%25 identity%3B 88%25 similarity InterPro: 4-oxalocrotonate tautomerase InterPro:IPR004370%3B Taut. ProDom: PD404143%3B Taut Pfam%3B PF01361%3B Tautomerase%3B 1. taut: 4-oxalocrotonate tautomerase helixturnhelix: reporting nucleic acid binding motif No transmembrane helices%3B~High confidence in function and specificity	gene	gene2477	http://www.ncbi.nlm.nih.gov/gene/?term=azo2429
azo2430	azo2430	nahK	nahK	2683055	2683843	-	4-Oxalocrotonate decarboxylase	Similar to TREMBL:Q93JW1 (67%25 identity)%3B TREMBL:Q9RHN0 (67%25 identity)%3B SWISSPROT:P49155 (59%25 identity). Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity	gene	gene2478	http://www.ncbi.nlm.nih.gov/gene/?term=azo2430
azo2431	azo2431	nahM	nahM	2683840	2684880	-	4-hydroxy 2-oxovalerate aldolase	Involved in Naphthalene or biphenyl and polychlorinated biphenyl degradation. Similar to TREMBL:Q9RHN1 (82%25 identity)%3B SWISSPROT:P51015 (80%25 identity)%3B SWISSPROT:P51017 (69%25 identity). InterPro (IPR000891): HMG-CoA Lyase-like. Pfam (PF00682): HMGL-like.%3B~High confidence in function and specificity	gene	gene2479	http://www.ncbi.nlm.nih.gov/gene/?term=azo2431
azo2432	azo2432	nahO	nahO	2684895	2685815	-	acetaldehyde dehydrogenase	Involved in naphthalene degradation. Similar to TREMBL:Q52039 (83%25 identity)%3B TREMBL:Q9ZI57 (76%25 identity)%3B SWISPROT:P77580 (52%25 identity). InterPro (IPR003361): Acetaldehyde dehydrogenase Pfam (PF02396): Acetaldehyde dehydrogenase.%3B~High confidence in function and specificity	gene	gene2480	http://www.ncbi.nlm.nih.gov/gene/?term=azo2432
azo2433	azo2433		azo2433	2685848	2686642	-	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8XUP8 (61%25 identity)%3B TREMBL:Q9I400 (57%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR) superfamily. InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene2481	http://www.ncbi.nlm.nih.gov/gene/?term=azo2433
azo2434	azo2434	nahL	nahL	2686737	2687519	-	2-oxopent-4-enoate hydratase	Conversion of 2-hydroxypent-2%2C4-dienoate into 4-hydroxy-2-oxopentanoate. Meta-cleavage pathway for the degradation of phenols%2C cresols and catechol. Belongs to the todj/xyli/xylj/hpcg family. Similar to TREMBL:Q93JW5 (75%25 identity)%3B TREMBL:Q9ZI58 (65%25 identity)%3B SWISSPROT:P23107 (73%25 identity). InterPro (IPR002607): Hydratase/decarboxylase Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity	gene	gene2482	http://www.ncbi.nlm.nih.gov/gene/?term=azo2434
azo2435	azo2435	nahI	nahI	2687635	2689089	-	2-hydroxymuconic semialdehyde dehydrogenase	2-hydroxymuconic semialdehyde dehydrogenase (HMSD). Homology to nahI of P. stutzeri of 73%25 (TREMBL:Q9S602) 2-HYDROXYMUCONIC ACID SEMIALDEHYDE CAN BE CONVERTED TO 2-HYDROXYPENT-24-DIENOATE EITHER DIRECTLY BY THE ACTION OF 2-HYDROXYMUCONIC SEMIALDEHYDE HYDROLASE (HMSH) OR BY THE ACTION OF THREE SEQUENTIAL ENZYMES THE FIRST OF WHICH IS HMSD. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs proA: gamma-glutamyl phosphate reductas	gene	gene2483	http://www.ncbi.nlm.nih.gov/gene/?term=azo2435
azo2436	azo2436		azo2436	2689143	2689580	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to orf4 of P. putida of 59%25 (trembl|Q93JW8). Pfam: DUF336. This family contains uncharacterised sequences%2C including several GlcG proteins. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity. no signal peptide. no TMHs	gene	gene2484	http://www.ncbi.nlm.nih.gov/gene/?term=azo2436
azo2437	azo2437	aphS	aphS	2689738	2690457	+	transcriptional regulator	Transcriptional regulator%2C%3B~High confidence in function and specificity	gene	gene2485	http://www.ncbi.nlm.nih.gov/gene/?term=azo2437
azo2438	azo2438	lapB2	lapB2	2690810	2691739	-	Catechol 2%2C3-dioxygenase (metapyrocatechase)	In Pseudomonas sp. strain KL28 the genes%2Cdesignated as lap (for long-chain alkylphenols)%2C encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. Catechol 2%2C3-dioxygenase LapB%2C%3B~High confidence in function and specificity	gene	gene2486	http://www.ncbi.nlm.nih.gov/gene/?term=azo2438
azo2439	azo2439	poxF	poxF	2691869	2692924	-	probable phenol hydroxylase%2C subunit P5	Probable phenol hydroxylase (EC 1.14.13.7) (Phenol 2-monooxygenase P5 component). Probable electron transfer from NADPH via FAD and the 2Fe-2S center to the oxygenase activity site of the enzyme. InterPro: Oxidoreductase FAD and NAD(P)-binding domain hisT_truA: tRNA pseudouridine synthase A%3B~Specificity unclear	gene	gene2487	http://www.ncbi.nlm.nih.gov/gene/?term=azo2439
azo2440	azo2440	poxE	poxE	2693134	2693493	-	probable phenol hydroxylase%2C subunit P4	Pseudomonas sp. phenol hydroxylase P4 protein (EC 1.14.13.7%2C (phenol 2-monooxygenase P4 component). CATABOLIZES PHENOL AND SOME OF ITS METHYLATED DERIVATIVES. P4 IS REQUIRED FOR GROWTH ON PHENOL AND FOR IN VITRO PHENOL HYDROXYLASE ACTIVITY.%3B~High confidence in function and specificity	gene	gene2488	http://www.ncbi.nlm.nih.gov/gene/?term=azo2440
azo2441	azo2441	poxD	poxD	2693966	2695519	-	probable phenol hydroxylase%2C subunit P3	Probable phenol hydroxylase subunit%2C68%25 identity(84%25 similarity) to trEMBL:Q9RAF6%2CPhenol hydroxylase component [phyC] [Ralstonia sp. KN1]. TrEMBL%3BQ9ZNP4 Has PF02332:Methane/Phenol/Toluene Hydroxylase%3BIPR003430%3BBacterial phenol hydroxylase (EC: 1.14.13.7) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (EC: 1.14.13.25) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes%2Calicyclic%2C aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (EC: 1.14.13.-)%2C which hydroxylates toluene to form P-cresol. PF04945:IPR007029%3B YHS domain%3B This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases%2C some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding%2Cpossibly copper ions. This domain is duplicated in some copper transporting ATPases.%3B~High confidence in function and specificity	gene	gene2489	http://www.ncbi.nlm.nih.gov/gene/?term=azo2441
azo2442	azo2442	poxC	poxC	2695548	2695817	-	probable phenol hydrolase%2C subunit P2	Probable phenol hydrolase%2C subunit P2. Catabolizes phenol and some of its methylated derivatives. p2 is required for growth on phenol%2C and for in vitro phenol hydroxylase activity. Similar to SWISSPROT:P19731 (47%25 similarity%2C71%25 identity). Pfam (PF02406): MmoB/DmpM family.%3B~High confidence in function and specificity	gene	gene2490	http://www.ncbi.nlm.nih.gov/gene/?term=azo2442
azo2443	azo2443	poxB	poxB	2695828	2696823	-	probable phenol hydroxylase%2C subunit P1	Probable Phenol hydroxylase%2C subunit P1%2C65%25 identity(69%25 similarity) to TrEMBL%3BQ7WYF3 LapL [lapL] [Pseudomonas sp. KL28]. Has PF02332%3BMethane/Phenol/Toluene Hydroxylase domain%3BIPR003430: Bacterial phenol hydroxylase (EC: 1.14.13.7) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (EC: 1.14.13.25) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes%2Calicyclic%2C aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (EC: 1.14.13.-)%2C which hydroxylates toluene to form P-cresol. No signal peptide or TMH reported to be present.%3B~Family membership	gene	gene2491	http://www.ncbi.nlm.nih.gov/gene/?term=azo2443
azo2444	azo2444	poxA	poxA	2696900	2697163	-	putative phenol hydrolase%2C subunit P0	Putative phenol hydroxylase%2C subunit P0. Homology to poxA of R. eutropha of 34%25 (trembl:O84958) This family consists of several bacterial phenol hydroxylase subunit proteins which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates. Pfam: Phenol hydrolase subunit no signal peptide no TMHs%3B~Family membership	gene	gene2492	http://www.ncbi.nlm.nih.gov/gene/?term=azo2444
azo2445	azo2445	poxG	poxG	2697463	2697780	-	probable ferredoxin-like protein	Probable ferredoxin-like protein. Homology to poxG of R. eutropha of 56%25 (trembl|O84964) The ferredoxins are iron-sulphur proteins that transfer electrons in a wide variety of metabolic reactions. Pfam: 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~Family membership	gene	gene2493	http://www.ncbi.nlm.nih.gov/gene/?term=azo2445
azo2446	azo2446	poxR	poxR	2698080	2699780	+	probable positive regulator of phenol-degratives genes	Transcriptional regulatory protein probable involved into the phenol degradation pathway%2C%3B~High confidence in function and specificity	gene	gene2494	http://www.ncbi.nlm.nih.gov/gene/?term=azo2446
azo2447	azo2447	pobR1	pobR1	2699777	2700655	-	PobR regulator	pobR. Transcriptional regulator AraC family. InterPro: AraC type helix-turn-helix pdxH: pyridoxamine 5-phosphate oxidase%3B~Function unclear	gene	gene2495	http://www.ncbi.nlm.nih.gov/gene/?term=azo2447
azo2448	azo2448	pobA	pobA	2700822	2702009	+	4-hydroxybenzoate 3-monooxygenase	P-hydroxybenzoate hydroxylase InterPro: Aromatic-ring hydroxylase (flavoprotein monooxygenase)%3B~High confidence in function and specificity	gene	gene2496	http://www.ncbi.nlm.nih.gov/gene/?term=azo2448
azo2449	azo2449		azo2449	2702082	2703143	-	putative two component response regulator	Putative two component response regulator%2C%3B~Conserved hypothetical protein	gene	gene2497	http://www.ncbi.nlm.nih.gov/gene/?term=azo2449
azo2450	azo2450		azo2450	2703151	2705901	-	putative two-component system sensor protein	Putative two-component system sensor protein%2C%3B~Function unclear	gene	gene2498	http://www.ncbi.nlm.nih.gov/gene/?term=azo2450
azo2451	azo2451		azo2451	2706261	2706971	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q98J95 (48%25 identity)%3B TREMBL:Q8YZV3 (43%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. PFAM (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene2499	http://www.ncbi.nlm.nih.gov/gene/?term=azo2451
azo2452	azo2452		azo2452	2707060	2707500	+	conserved hypothetical protein	Conserved hypothetical protein%2C 31%25 identity (51%25 similarity) to TrEMBL%3BQ6NAA7. Has PF02637%2C GatB/Yqey domain%3BIPR003789:This domain is found in GatB and proteins related to bacterial Yqey P54464. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB O30509 which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism. No Signal peptide or TMH present.%3B~Function unclear	gene	gene2500	http://www.ncbi.nlm.nih.gov/gene/?term=azo2452
azo2453	azo2453		azo2453	2707510	2708151	-	probable negative transcriptional regulator	Probable negative transcriptional regulator%2C%3B~Family membership	gene	gene2501	http://www.ncbi.nlm.nih.gov/gene/?term=azo2453
azo2454	azo2454		azo2454	2708500	2709174	+	hypothetical secreted protein	Hypothetical secreted protein no homology of the entire protein to the data bank no domains predicted signal peptide no TMHs	gene	gene2502	http://www.ncbi.nlm.nih.gov/gene/?term=azo2454
azo2455	azo2455	rcp2	rcp2	2709188	2709628	-	putative two-component response regulator	Putative two-component response regulator%2C%3B~Specificity unclear	gene	gene2503	http://www.ncbi.nlm.nih.gov/gene/?term=azo2455
azo2456	azo2456	cph1	cph1	2709625	2711352	-	putative two-component system sensor protein	Putative two-component system sensor protein%2C%3B~Function unclear	gene	gene2504	http://www.ncbi.nlm.nih.gov/gene/?term=azo2456
azo2457	azo2457		azo2457	2711355	2713823	-	putative sensory box histidine kinase	Putative sensory box histidine kinase%2C%3B~Function unclear	gene	gene2505	http://www.ncbi.nlm.nih.gov/gene/?term=azo2457
azo2458	azo2458		azo2458	2714039	2714560	-	putative transcriptional regulator%2C LuxR family	Putative transcriptional regulator%2C LuxR family%2Cvery low similarity to SWISSPROT: sprot|NARP_ECOLI (16%25 Escherichia coli%2C NarP) InterPro: IPR000792 HTH_LuxR. Pfam: PF00196 GerE. Signal P reporting signal peptide. HTH reporting nucleic acid binding motif.%3B~Function unclear	gene	gene2506	http://www.ncbi.nlm.nih.gov/gene/?term=azo2458
azo2459	azo2459		azo2459	2715013	2716176	+	Hypothetical protein	Hypothetical protein%2C has very weak homolgy with hits in the database. NO motifs%2Cdomains%2C signal peptide or TMH present.	gene	gene2507	http://www.ncbi.nlm.nih.gov/gene/?term=azo2459
azo2460	azo2460		azo2460	2716200	2717258	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37%25 (gi|14026496|dbj|BAB53093.1|). No domains predicted. No TMHs. No signal peptide.	gene	gene2508	http://www.ncbi.nlm.nih.gov/gene/?term=azo2460
azo2461	azo2461		azo2461	2717280	2718590	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58%25 (trembl|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	gene	gene2509	http://www.ncbi.nlm.nih.gov/gene/?term=azo2461
azo2462	azo2462		azo2462	2718645	2720618	+	hypothetical secreted protein	Hypothetical secreted protein. No homology of the entire protein to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene2510	http://www.ncbi.nlm.nih.gov/gene/?term=azo2462
azo2463	azo2463		azo2463	2720645	2721274	+	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs	gene	gene2511	http://www.ncbi.nlm.nih.gov/gene/?term=azo2463
azo2464	azo2464		azo2464	2721255	2722364	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to mll6883 of M.loti of 58%25 (trembl|Q987W1(SRS)). No domains predicted. No TMHs. No signal peptide.	gene	gene2512	http://www.ncbi.nlm.nih.gov/gene/?term=azo2464
azo2465	azo2465		azo2465	2722381	2723358	+	hypothetical protein	Hypothetical protein. No homology to the data base. No domains predicted. No signal peptide. No TMHs.	gene	gene2513	http://www.ncbi.nlm.nih.gov/gene/?term=azo2465
azo2466	azo2466		azo2466	2723377	2724144	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2514	http://www.ncbi.nlm.nih.gov/gene/?term=azo2466
azo2467	azo2467		azo2467	2724141	2725190	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to mll6881 of M.loti of 49%25 (trembl|Q987W3(SRS)). No domains predicted. No TMHs. No signal peptide.	gene	gene2515	http://www.ncbi.nlm.nih.gov/gene/?term=azo2467
azo2468	azo2468		azo2468	2725351	2726754	+	conserved hypothetical transcriptional regulator	Conserved hypothetical transcriptional regulator. Homology to pp3544 of P. putida of 56%25 (trembl|Q88H21). InterPro: Aminotransferases class-I (IPR004838)%3B Bacterial regulatory proteins%2C GntR family (IPR000524). Pfam: Bacterial regulatory proteins%2C gntR family%3B Aminotransferase class I and II. no signal peptide. no TMHs%3B~Family membership	gene	gene2516	http://www.ncbi.nlm.nih.gov/gene/?term=azo2468
azo2469	azo2469		azo2469	2726765	2727181	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to bb1298 of B. brochiseptica of 64%25 (trembl|Q7WMU2). Pfam: Glyoxalase/Bleomycin restiant protein. no signal peptide. no TMHs	gene	gene2517	http://www.ncbi.nlm.nih.gov/gene/?term=azo2469
azo2470	azo2470	lldD	lldD	2727286	2728407	-	conserved hypothetical L-lactate dehydrogenase (cytochrome)	Conserved hypothetical L-lactate dehydrogenase (cytochrome). Homology to lldD of B. bronchisptica of 51%25 (tremble:Q7WND1). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262)%3B Protein binding FMN and related compounds core region (IPR003009). Pfam: FMN-dependent dehydrognease. no signal peptide. no TMHs%3B~Family membership	gene	gene2518	http://www.ncbi.nlm.nih.gov/gene/?term=azo2470
azo2471	azo2471	panE1	panE1	2728444	2729406	-	2-dehydropantoate 2-reductase	Ketopantoate reductase (KPA reductase) (KPR). Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). TIGRFAM: apbA_panE: 2-dehydropantoate 2-reductase Pfam: ApbA: Ketopantoate reductase PanE/ApbA%3B~High confidence in function and specificity	gene	gene2519	http://www.ncbi.nlm.nih.gov/gene/?term=azo2471
azo2472	azo2472	dctP4	dctP4	2729490	2730527	-	putative C4-dicarboxylate-binding periplasmic protein	TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 22%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present. TMHelix:1%3B~High confidence in function and specificity	gene	gene2520	http://www.ncbi.nlm.nih.gov/gene/?term=azo2472
azo2473	azo2473	xylC	xylC	2730630	2732087	-	probable benzaldehyde dehydrogenase (NAD+)	Probable benzaldehyde dehydrogenase [NAD+] (EC 1.2.1.28). Homology to xylC of P. putida of 53%25 (sprot|XYLC_PSEPU). CATALYTIC ACTIVITY: Benzaldehyde + NAD(+) + H(2)O %3D benzoate + NADH. Interpro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs proA: gamma-glutamyl phosphate reductas%3B~Family membership	gene	gene2521	http://www.ncbi.nlm.nih.gov/gene/?term=azo2473
azo2474	azo2474	alsS	alsS	2732140	2733846	-	acetolactate synthase	Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS). InterPro: Thiamine pyrophosphate dependent enzyme TIGRFAM: acolac_lg: acetolactate synthase large subunit%3B~Family membership	gene	gene2522	http://www.ncbi.nlm.nih.gov/gene/?term=azo2474
azo2475	azo2475	dntR	dntR	2733998	2734894	-	transcriptional regulator%2C LysR family	Transcriptional regulator%2C%3B~High confidence in function and specificity	gene	gene2523	http://www.ncbi.nlm.nih.gov/gene/?term=azo2475
azo2476	azo2476	rdxA	rdxA	2735125	2736588	+	putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein	Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to rdxA of R. sphaeroides of 37%25 (SWISSPROT:RDXA_RHOSH) Involved in a membrane generated redox signal. Pfam: 4Fe-4S binding domain Probable 5 TMHs no signal peptide%3B~Family membership	gene	gene2524	http://www.ncbi.nlm.nih.gov/gene/?term=azo2476
azo2477	azo2477		azo2477	2737170	2737286	-	Hypothetical protein	Putative hypothetical protein. Has extremely weak homologs in the the database. No signaficant known doamins%2Cmotifs or signal peptide present.	gene	gene2525	http://www.ncbi.nlm.nih.gov/gene/?term=azo2477
azo2478	azo2478		azo2478	2737435	2738619	+	putative permease%2C member of the MFS transporter	Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 34%25 MFS.IPR005829%3B Sug_transporter.IPR010916%3BTONB_Box_N. TMHelix:9.%3B~Function unclear	gene	gene2526	http://www.ncbi.nlm.nih.gov/gene/?term=azo2478
azo2479	azo2479		azo2479	2738628	2739335	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to VV12384 of Vibrio vulnificus of 60%25 (trembl|Q8DA26). No domains predicted. TMHMM2 reporting 1 TMH present. No signal peptide present.%3B~Conserved hypothetical protein	gene	gene2527	http://www.ncbi.nlm.nih.gov/gene/?term=azo2479
azo2480	azo2480		azo2480	2739453	2739998	-	putative TetR family transcriptional regulator	Putative TetR family transcriptional regulator%2C%3B~Family membership	gene	gene2528	http://www.ncbi.nlm.nih.gov/gene/?term=azo2480
azo2481	azo2481		azo2481	2740029	2740652	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein	gene	gene2529	http://www.ncbi.nlm.nih.gov/gene/?term=azo2481
azo2482	azo2482		azo2482	2740640	2745688	-	putative hybrid sensor and regulator	Gene function unknown%2C no significant homology to proteins of known function. Typical domains for hybrid sensor and regulator are found. InterPro: IPR003594 ATPbind_ATPase. IPR004358 Bact_sens_pr_C. IPR005467 His_kinase. IPR003661 His_kinA_N. IPR001789 Response_reg. IPR008207 Hpt. IPR000014 PAS_domain. IPR001610 PAC. Pfam: PF00072 Response_reg. PF02518 HATPase_c. PF00512 HisKA. PF00989 PAS. PF00785 PAC. SMART: SM00387 HATPase_c. SM00388 HisKA. SM00448 REC. SM00091 PAS SM00086 PAC. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Conserved hypothetical protein	gene	gene2530	http://www.ncbi.nlm.nih.gov/gene/?term=azo2482
azo2483	azo2483		azo2483	2745706	2746377	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Magn03007875 of Magnetospirillum magnetotacticum of 31%25 (gi|46202369|ref|ZP_00208493.1|(NBCI ENTREZ)). No domains predicted. Signal Peptide is reported to be Present%2C by Signal P program. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene2531	http://www.ncbi.nlm.nih.gov/gene/?term=azo2483
azo2484	azo2484		azo2484	2746361	2747515	-	putative response regulator	Putative response regulator%2C%3B~Family membership	gene	gene2532	http://www.ncbi.nlm.nih.gov/gene/?term=azo2484
azo2485	azo2485		azo2485	2747681	2747938	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to eca2717 of E. carotovora of 35%25 (tremble:Q6D3M7). no domains predicted. no signal peptide. no TMHs	gene	gene2533	http://www.ncbi.nlm.nih.gov/gene/?term=azo2485
azo2486	azo2486	ppsA2	ppsA2	2747955	2750558	-	putative phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase(Pyruvatewater dikinase)(PEP synthase). Essential step in gluconeogenesis when pyruvate and lactate are used as a carbon source.Catalytic activity:atp + pyruvate + h(2)o %3D amp + phosphoenolpyruvate + phosphate. 25%25 PEP_mobile.IPR006319%3B PEP_synth.IPR000121%3BPEP_utilizers.IPR002192%3B PPDK_N_term. Pfam:PF00391%3B PEP-utilizers%3B 1.PF02896%3B PEP-utilizers_C%3B 1. PF01326%3B PPDK_N%3B 1. TIGRFAMs:TIGR01418%3B PEP_synth%3B 1.%3B~High confidence in function and specificity	gene	gene2534	http://www.ncbi.nlm.nih.gov/gene/?term=azo2486
azo2487	azo2487		azo2487	2750555	2751166	-	putative TetR family transcriptional regulator	Putative TetR family transcriptional regulator%2C%3B~Family membership	gene	gene2535	http://www.ncbi.nlm.nih.gov/gene/?term=azo2487
azo2488	azo2488		azo2488	2751342	2751662	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2536	http://www.ncbi.nlm.nih.gov/gene/?term=azo2488
azo2489	azo2489		azo2489	2751828	2753672	-	putative transport protein	Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions(sodium symporters). Hypothetical E.coli protein yfbS. Similar to TrkA. The NAD+ -binding protein TrkA is a component of a low-affinity K+ uptake system in Escherichia coli. This protein has the TrkA-C and TrkA-N domains. dass: anion transporter%3B~High confidence in function and specificity	gene	gene2537	http://www.ncbi.nlm.nih.gov/gene/?term=azo2489
azo2490	azo2490	txn	txn	2753758	2754147	-	thioredoxin-disulfide reductase	Putative Thioredoxin. Homology to txn (THIO_ICTPU) of I. punctatus of 36%25. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. InterPro: Thioredoxin (IPR0006662) Tigrfam: dsbE: periplasmic protein thiol:disulfie Oxidoreductase%2C DSB subfamily Pfam: Thioredoxin no signal peptide no TMHs%3B~Family membership	gene	gene2538	http://www.ncbi.nlm.nih.gov/gene/?term=azo2490
azo2491	azo2491	etfA3	etfA3	2754465	2755391	-	probable electron transfer flavoprotein%2C alpha subunit	Probable electron transfer flavoprotein%2C alpha subunit. Homology to etfA of B. japonicum of 65%25 (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2539	http://www.ncbi.nlm.nih.gov/gene/?term=azo2491
azo2492	azo2492	etfB3	etfB3	2755391	2756140	-	electron transfer flavoprotein%2C beta subunit	Electron transfer flavoprotein%2C beta subunit. Homology to etfB of B. japonicum of 71%25 (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein beta-subunit (IPR000049) Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS%3B~High confidence in function and specificity	gene	gene2540	http://www.ncbi.nlm.nih.gov/gene/?term=azo2492
azo2493	azo2493		azo2493	2756182	2756715	-	conserved hypothetical protein	Entry name:- TREMBL:Q8XXS1 InterPro IPR002539%3B MaoC_dehydratas. Pfam PF01575%3B MaoC_dehydratas%3B 1. Identities %3D 74/154 (48%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0	gene	gene2541	http://www.ncbi.nlm.nih.gov/gene/?term=azo2493
azo2494	azo2494	aidB2	aidB2	2756715	2758502	-	putative acyl-CoA dehydrogenase	The aidB gene encodes a protein of ca. 60 kDa that is homologous to several mammalian acyl coenzyme A dehydrogenases. Reaction:- acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor Entry name SWISSPROT:AIDB_ECOLI InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1. Identities %3D 85/289 (29%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene2542	http://www.ncbi.nlm.nih.gov/gene/?term=azo2494
azo2495	azo2495	fcbC1	fcbC1	2758926	2759345	-	probable thiesterase	4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23). This family contains a wide variety of enzymes%2Cprincipally thioesterases. This family includes 4HBT which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3 InterPro:IPR008272%3B 4HBcoA_thiost_AS. IPR006683%3B Thioestr_supf. Pfam:PF03061%3B 4HBT InterPro: 4-hydroxybenzoyl-CoA thioesterase family active site No signal peptide No transmembrane helices TIGR00051: conserved hypothetical protein%3B~High confidence in function and specificity	gene	gene2543	http://www.ncbi.nlm.nih.gov/gene/?term=azo2495
azo2496	azo2496		azo2496	2759364	2760131	-	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2C%3B~Specificity unclear	gene	gene2544	http://www.ncbi.nlm.nih.gov/gene/?term=azo2496
azo2497	azo2497	paaJ2	paaJ2	2760328	2761587	-	putative beta-ketoadipyl CoA thiolase	Thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA (By similarity). Entry name PAAJ_ECOLI Primary accession number P77525 Identity: 150/410 (36%25) InterPro IPR002155%3B Thiolase. Pfam PF02803%3B Thiolase_C%3B 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Family membership	gene	gene2545	http://www.ncbi.nlm.nih.gov/gene/?term=azo2497
azo2498	azo2498	paaG3	paaG3	2761584	2762369	-	putative enoyl-CoA hydratase	Entry name SWISSPROT:PAAG_ECOLI InterPro :-IPR001753%3B EnCoA_hydrtse. Identities %3D 62/250 (24%25) Pfam:-PF00378%3B ECH%3B 1. function:-Could possibly oxidizes fatty acids using specific components (by similarity). catalytic activity :-(3s)-3-hydroxyacyl-coa %3D trans-2(or 3)-enoyl-coa + h(2)o. Number of predicted TMHs: 0%3B~Family membership	gene	gene2546	http://www.ncbi.nlm.nih.gov/gene/?term=azo2498
azo2499	azo2499	fadD2	fadD2	2762390	2764258	-	Long-chain-fatty-acid-CoA ligase	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (Long-chain acyl-CoA synthetase). Esterification concomitant with transport of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids%2C TREMBL:Q89CF2 (46%25 identity)%3B TREMBL:Q89CJ5 (44%25 identity). Pfam (PF00501): AMP-binding enzyme.%3B~Specificity unclear	gene	gene2547	http://www.ncbi.nlm.nih.gov/gene/?term=azo2499
azo2500	azo2500	livK2	livK2	2764287	2765432	-	putative leucine-specific binding protein	In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar sprot|LIVK_ECOLI (21%25) and to trembl|Q9RYP6 (50%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene2548	http://www.ncbi.nlm.nih.gov/gene/?term=azo2500
azo2501	azo2501		azo2501	2765867	2766628	-	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX4 (66%25) and to trembl|Q89PQ7 (62%25). Smart: AAA ATPases%3B~Specificity unclear	gene	gene2549	http://www.ncbi.nlm.nih.gov/gene/?term=azo2501
azo2502	azo2502		azo2502	2766628	2768421	-	probable branched-chain amino acid ABC transporter	Probable branched-chain amino acid ABC transporter%2CATP binding protein%2C%3B~Specificity unclear	gene	gene2550	http://www.ncbi.nlm.nih.gov/gene/?term=azo2502
azo2503	azo2503		azo2503	2768487	2769524	-	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q7W5E8 (62%25)%2C to sprot|BRAD_PSEAE (25%25) and to sprot|LIVH_ECOLI (26%25). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting nine Tmhelix.%3B~Specificity unclear	gene	gene2551	http://www.ncbi.nlm.nih.gov/gene/?term=azo2503
azo2504	azo2504		azo2504	2769967	2770881	+	putative TetR family transcriptional regulator	Putative TetR family transcriptional regulator%2C%3B~Family membership	gene	gene2552	http://www.ncbi.nlm.nih.gov/gene/?term=azo2504
azo2505	azo2505		azo2505	2771064	2771702	+	putative TetR family transcriptional regulator	Putative TetR family transcriptional regulator%2C%3B~Family membership	gene	gene2553	http://www.ncbi.nlm.nih.gov/gene/?term=azo2505
azo2506	azo2506	cmd	cmd	2771799	2772377	+	4-carboxymuconolactone decarboxylase	Conserved hypothetical protein. The highly identitcal hits such as Hypothetical Proteins of TrEMBL%3BQ8XXB7%2CQ6N0V6(80%25 identity) do not share all the domains as this Protein. Has Carboxymuconolactone decarboxylase family%3BIPR003779%2C CMD:The catechol and protocatechuate branches of the 3-oxoadipate pathway%2Cwhich areimportant for the bacterial degradation of aromatic compounds%2C converge at the common intermediate 3-oxoadipate enol-lactone. Carboxymuconolactone decarboxylase is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway.%3B~Specificity unclear	gene	gene2554	http://www.ncbi.nlm.nih.gov/gene/?term=azo2506
azo2507	azo2507		azo2507	2772486	2772884	-	hypothetical membrane protein	Hypothetical membrane protein. no homology of the entire protein to the data bank. no domains predicted. no signal peptide. 2 TMHS	gene	gene2555	http://www.ncbi.nlm.nih.gov/gene/?term=azo2507
azo2508	azo2508		azo2508	2772945	2773253	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03003856 of Dechloromonas aromatica of 41%25 (gi|46140330|ref|ZP_00203564.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs	gene	gene2556	http://www.ncbi.nlm.nih.gov/gene/?term=azo2508
azo2509	azo2509		azo2509	2773297	2775222	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to cv0086 of C. violaceum of 76%25 (trembl|Q7P1X6). no signal peptide. no TMHs. No domains reported.	gene	gene2557	http://www.ncbi.nlm.nih.gov/gene/?term=azo2509
azo2510	azo2510		azo2510	2775497	2775781	-	putative iron-sulfur protein	Bacterial ring hydroxylating dioxygenase%2Csmall subunit. Similar to AlcE: iron-sulfur-containing dioxygenases%2C probably involved in alcaligin biosynthesis pathway in Bordetella species. Putative iron-sulfure protein involved in aromatic compounds degradations. Rieske [2Fe-2S] domain present. Probable Choline monooxygenase chloroplast precursor (EC 1.14.15.7). nadp_idh_euk: isocitrate dehydrogenase%3B~Function unclear	gene	gene2558	http://www.ncbi.nlm.nih.gov/gene/?term=azo2510
azo2511	azo2511	fpvA1	fpvA1	2776065	2778491	-	putative TonB-dependent receptor	Iron-regulated outer membrane protein. TonB-dependent receptor protein. Homolog to fpvA%2C a ferripyoverdine receptor precursor in P. aeruginosa. Similar to PupA protein of P. putida WCS%2Cthis protein is a receptor for the iron-bound form of pesudobactin%2C a compound structurally very%3B~High confidence in function and specificity	gene	gene2559	http://www.ncbi.nlm.nih.gov/gene/?term=azo2511
azo2512	azo2512		azo2512	2778614	2779630	-	putative transmembrane sensor	Probable FecR-like transmembrane sensor involved in iron metabolism. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.%3B~High confidence in function and specificity	gene	gene2560	http://www.ncbi.nlm.nih.gov/gene/?term=azo2512
azo2513	azo2513		azo2513	2779714	2780268	-	putative sigma factor%2C ECF subfamily	Probable fecI-like RNA polymerase sigma factor. THE SIGMA FACTOR IS AN INITIATION FACTOR THAT PROMOTES ATTACHMENT OF THE RNA POLYMERASE TO SPECIFIC INITIATION SITES AND THEN IS RELEASED. THIS SIGMA FACTOR REGULATES THE FEC GENES FOR IRON DICITRATE TRANSPORT (PROBABLE). InterPro: Sigma factor ECF subfamily%3B~Specificity unclear	gene	gene2561	http://www.ncbi.nlm.nih.gov/gene/?term=azo2513
azo2514	azo2514	nagAb	nagAb	2780947	2781264	-	putative ferredoxin	Naphthalene 12-dioxygenase system ferredoxin component. COMPONENT OF NAPHTHALENE DIOXYGENASE (NDO) MULTICOMPONENT ENZYME SYSTEM WHICH CATALYZES THE INCORPORATION OF BOTH ATOMS OF MOLECULAR OXYGEN INTO NAPHTHALENE TO FORM CIS- NAPHTHALENE DIHYDRODIOL. THIS SUBUNIT IS A 2FE-2S FERREDOXIN THAT TRANSFERS ELECTRONS TO IRON SULFUR PROTEIN COMPONENTS (ISP).%3B~High confidence in function and specificity	gene	gene2562	http://www.ncbi.nlm.nih.gov/gene/?term=azo2514
azo2515	azo2515	nagH	nagH	2781315	2781818	-	putative ring hydroxylating beta subunit	NagH: probable salicylate-5-hydroxylase small oxygenase component oxidoreductase protein. Involved in conversion of Naphthalene to gentisate. Aromatic compounds degradation.%3B~Family membership	gene	gene2563	http://www.ncbi.nlm.nih.gov/gene/?term=azo2515
azo2516	azo2516	nagG	nagG	2781815	2783131	-	putative ring hydroxylating large subunit	nagG%2CRSc1090:putative salicylate-5-hydroxylase large oxygenase component oxidoreductase protein [EC:1.-.-.-]. Rieske-type iron-sulfur center homologous to the large subunits of dihydroxylating dioxygenases. Involved in conversion of Naphthalene to gentisate. Aromatic compounds degradation. Biphenyl dioxygenase alpha subunit (EC 1.14.12.18) (Biphenyl 23- dioxygenase).%3B~High confidence in function and specificity	gene	gene2564	http://www.ncbi.nlm.nih.gov/gene/?term=azo2516
azo2517	azo2517	nagAa	nagAa	2783542	2784528	-	Naphthalene 1%2C2-dioxygenase / Ferredoxin--NAD(+) reductase	Naphthalene 12-dioxygenase system ferredoxin--NAD(+) reductase component COMPONENT OF NAPHTHALENE DIOXYGENASE (NDO) MULTICOMPONENT ENZYME SYSTEM WHICH CATALYZES THE INCORPORATION OF BOTH ATOMS OF MOLECULAR OXYGEN INTO NAPHTHALENE TO FORM CIS- NAPHTHALENE DIHYDRODIOL. TRANSFERS ELECTRONS FROM FERREDOXIN (NDOA) TO NADH.%3B~High confidence in function and specificity	gene	gene2565	http://www.ncbi.nlm.nih.gov/gene/?term=azo2517
azo2518	azo2518	nahR2	nahR2	2784640	2785581	+	LysR-family transcriptional regulator	LysR-type transcriptional regulator NahR Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes. Similar to SWISSPROT: sprot|NAHR_PSEPU (61%25 Pseudomonas putida%2C nahR) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2ClysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene2566	http://www.ncbi.nlm.nih.gov/gene/?term=azo2518
azo2519	azo2519	dctM5	dctM5	2785687	2787012	-	probable TRAP-type C4 dicarboxylate transport system%2C large permease	TRAP-type C4-dicarboxylate transport system%2C large permease component%2CDctM. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 25%25 DctM.IPR000252%3B DedA.IPR000524%3B HTH_GntR.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. TMHelix: 11.%3B~Specificity unclear	gene	gene2567	http://www.ncbi.nlm.nih.gov/gene/?term=azo2519
azo2520	azo2520		azo2520	2787009	2787533	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PM1526 of Pasteurella multocida of 32%25 (trembl|Q9CKT0(SRS)). Pfam: PF04290%3BIPR007387%3BTripartite ATP-independent periplasmic transporters%2C DctQ component%3B The function of the members of this family is unknown%2C but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene2568	http://www.ncbi.nlm.nih.gov/gene/?term=azo2520
azo2521	azo2521	dctP5	dctP5	2787622	2788647	-	putative C4-dicarboxylate-binding periplasmic protein	TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 23%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present.%3B~Specificity unclear	gene	gene2569	http://www.ncbi.nlm.nih.gov/gene/?term=azo2521
azo2522	azo2522	ligB1	ligB1	2788910	2789752	-	Protocatechuate 4%2C5-dioxygenase beta chain	Protocatechuate 4%2C5-dioxygenase beta chain subunit%2Chaving 63%25 similarity(48%25 identity)to TrEMBL%3BQ8PP10%2CProtocatechuate 3%2C4-dioxygenase beta chain [pcaH] [Xanthomonas axonopodis (pv. citri)] Swiss-Prot: P22636 PF02900%3BIPR004183 %3BCatalytic LigB subunit of aromatic ring-opening dioxygenase.The LigAB enzyme (a protocatechuate 4%2C5-dioxygenase EC: 1.13.11.8)%2C of Sphingomonas paucimobilis oxidizes protocatechuate (or 3%2C4-dihydroxybenzoic acid%2C PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family%2Cwhich catalyzes the ring-opening reaction of protocatechuate and related compounds . Other members of this family include 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase (EC: 1.13.11.15) and 2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase. No Signal peptide or TMH reported present.%3B~High confidence in function and specificity	gene	gene2570	http://www.ncbi.nlm.nih.gov/gene/?term=azo2522
azo2523	azo2523	ligA1	ligA1	2789756	2790106	-	protocatechuate 4%2C5-dioxygenase	Protocatechuate 4%2C5-dioxygenase alpha subunit%2C 39%25 Identity to TrEMBL%3BQ6N0R0%2CQ6NB24%2C Q9KWL5. Has PF07746Aromatic-ring-opening dioxygenase LigAB%2C LigA subunit%3B TMHMM2 reports 1 TMH.	gene	gene2571	http://www.ncbi.nlm.nih.gov/gene/?term=azo2523
azo2524	azo2524	pnbR	pnbR	2790194	2791156	+	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear	gene	gene2572	http://www.ncbi.nlm.nih.gov/gene/?term=azo2524
azo2525	azo2525		azo2525	2791543	2793033	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. Pfam: Endo/excinuclease amino terminal domain. no signal peptide. no TMHs. HTH predicted	gene	gene2573	http://www.ncbi.nlm.nih.gov/gene/?term=azo2525
azo2526	azo2526	pobR2	pobR2	2793435	2794322	-	transcriptional regulator%2C AraC family	Transcriptional regulator%2C AraC family%2C%3B~High confidence in function and specificity	gene	gene2574	http://www.ncbi.nlm.nih.gov/gene/?term=azo2526
azo2527	azo2527		azo2527	2794548	2795711	+	Cytochrome P450 family protein	Cytochrome P450s are involved in the oxidative degradation of various compounds. Particularly well known for their role in the degradation of environmental toxins and mutagens. Similar to SWISSPROT:P77902 (30%25 identity)%3B TREMBL:Q59910 (32%25 identity)%3B SWISSPROT:O34374 (28%25 identity). Pfam (PF00067): Cytochrome P450.%3B~Family membership	gene	gene2575	http://www.ncbi.nlm.nih.gov/gene/?term=azo2527
azo2528	azo2528	fdxP	fdxP	2795797	2796120	+	probable ferrodoxin	Probable ferredoxin. Homology to fdxP of C. crescentus of 51%25 (sprot|FER2_CAUCR). Ferredons are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: Ferredoxin (IPR001041)%2CAdrenodoxin (IPR001055) Pfam: 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2576	http://www.ncbi.nlm.nih.gov/gene/?term=azo2528
azo2529	azo2529	camA	camA	2796181	2797398	+	probable putidaredoxin reductase	Probable putidaredoxin reductase (EC 1.18.1.-). Homology to camA of P. putida of 48%25 (sprot|CAMA_PSEPU). The oxidation of camphor by cytochrome p450-cam requires the participation of a flavoprotein%2C putidaredoxin reductase%2C and an iron-sulfur protein%2C putidaredoxin%2C to mediate the transfer of electrons from nadh to p450 for oxygen activation. Interpro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IRP001327)%2C NAD binding site (IPR000205) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs%3B~Family membership	gene	gene2577	http://www.ncbi.nlm.nih.gov/gene/?term=azo2529
azo2530	azo2530		azo2530	2797558	2798433	+	conserved hypothetical protein	Hypothetical protein yqgX. 65%25 identity%2C 75%25 similarity to conserved hypothetical protein (TREMBL:Q7P219) InterPro%3B TREMBL:Q7WQV2%3B Metallo-beta-lactamase superfamily. Pfam: Aminotransferase class III%3B helper component proteinase TREMBL:Q9DCMO-RIKEN cDNA%3B TREMBL:Q9A911 - GlyoxlaseII superfamily protein. TIGR00162: conserved hypothetical protein. Signal peptide-nonsecretory protein%3B Transmembrane helices present.%3B~Function unclear	gene	gene2578	http://www.ncbi.nlm.nih.gov/gene/?term=azo2530
azo2531	azo2531		azo2531	2798436	2799140	-	conserved hypothetical protein		gene	gene2579	http://www.ncbi.nlm.nih.gov/gene/?term=azo2531
azo2532	azo2532		azo2532	2799319	2799741	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2580	http://www.ncbi.nlm.nih.gov/gene/?term=azo2532
azo2533	azo2533	fliC1	fliC1	2799878	2801560	+	putative flagellin	Flagellin (Phase-1-D flagellin). Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. InterPro: Flagellin N-terminus%2CFlagellin C-terminus Pfam: Bacterial flagellin N-terminus%2Cbacterial flagellin C-terminus no signal peptide no TMH%3B~Family membership	gene	gene2581	http://www.ncbi.nlm.nih.gov/gene/?term=azo2533
azo2534	azo2534	mdcF2	mdcF2	2801557	2802510	-	putative malonate transporter	Putative malonate transporter. TREMBL:Q7ML40: 38%25 identity%2C 55%25 similarity SPROT:P56949: 27%25 identity%2C 44%25 similarity subcellular location:integral membrane protein (potential). similarity:belongs to the auxin efflux carrier (tc 2.a.69) family. InterPro:IPR004776%3B Auxin_eff. Pfam: PF03547%3B Auxin_eff%3B GntP_permease%3BGntP family permease (Pfam) 2a69: Auxin Efflux Carrier Signal P predicted signal peptide and TMHMM predicted 10 transmembrane helices%3B~Specificity unclear	gene	gene2582	http://www.ncbi.nlm.nih.gov/gene/?term=azo2534
azo2535	azo2535	yakC	yakC	2802611	2803606	-	probable aldo-keto reductase	Probable aldo-keto reductase. Homology to yakC of S.pombe of 43%25 (sprot|YAKC_SCHPO). Catalyze the reduction of 2-nitorbenzaldehyde%2C pyridine-2-aldehyde and 2-phthaladehyde. Pfam: Aldo/Keto reductase signal peptide no TMHs%3B~Family membership	gene	gene2583	http://www.ncbi.nlm.nih.gov/gene/?term=azo2535
azo2536	azo2536	ligC	ligC	2804153	2805112	-	probable oxidoreductase	Hypothetical oxidoreductase yrbE (EC 1.-.-.-). TREMBL:Q93PS4:90%25 identity%3B 93%25 similarity. This group of enzymes utilise NADP or NAD%2C and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase%2C which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80%2C a negative regulator for the expression of lactose and galactose metabolic genes%3B and several hypothetical proteins from yeast%2C Escherichia coli and Bacillus subtilis. InterPro:IPR000683%3B GFO_IDH_MocA. IPR004104%3B GFO_IDH_MocA_C. Pfam: PF01408%3B GFO_IDH_MocA%3B 1. PF02894%3B GFO_IDH_MocA_C%3B presence of DUF206 Probably nonsecretory protein (SignalP predicted) Number of predicted TMHs: 0 (TMHMM predicted) InterPro: Oxidoreductase N-terminal ubiX: phenylacrylic acid decarboxylase 3%3B~High confidence in function and specificity	gene	gene2584	http://www.ncbi.nlm.nih.gov/gene/?term=azo2536
azo2537	azo2537	ligB2	ligB2	2805209	2806063	-	protocatechuate 4%2C5-dioxygenase	Protocatechuate 4%2C5-dioxygenase beta chain subunit%2Chaving 91%25 similarity(85%25 identity)to TrEMBL%3BQ6N0Q9%2CProtocatechuate 3%2C4-dioxygenase beta chain [pcaH] [Xanthomonas axonopodis (pv. citri)]Swiss-Prot: P22636%3BPF02900%3BIPR004183 %3BCatalytic LigB subunit of aromatic ring-opening dioxygenase.The LigAB enzyme (a protocatechuate 4%2C5-dioxygenase EC: 1.13.11.8)%2C of Sphingomonas paucimobilis oxidizes protocatechuate (or 3%2C4-dihydroxybenzoic acid%2C PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family%2Cwhich catalyzes the ring-opening reaction of protocatechuate and related compounds . Other members of this family include 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase (EC: 1.13.11.15) and 2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase. No Signal peptide or TMH present%3B~High confidence in function and specificity	gene	gene2585	http://www.ncbi.nlm.nih.gov/gene/?term=azo2537
azo2538	azo2538	ligA2	ligA2	2806066	2806506	-	protocatechuate 4%2C5-dioxygenase%2C alpha chain	[EC:1.13.11.8] %2C Protocatechuate 4%2C5-dioxygenase alpha chain (EC 1.13.11.8) (4%2C5-PCD).%2C Aromatic-ring-opening dioxygenase LigAB%2C LigA subunit%3B~High confidence in function and specificity	gene	gene2586	http://www.ncbi.nlm.nih.gov/gene/?term=azo2538
azo2539	azo2539	ligI	ligI	2807012	2807926	-	probable 2-pyrone-4%2C6-dicarboxylate hydrolase	Probable 2-pyrone-4%2C6-dicarboxylate hydrolase. Homology to ligI of S. paucimobilis of 55%25 (tremble:O87170) Pfam: Amidohydrolase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2587	http://www.ncbi.nlm.nih.gov/gene/?term=azo2539
azo2540	azo2540	mmsB	mmsB	2807967	2808902	-	putative 3-hydroxyisobutyrate dehydrogenase	Activity:- 3-hydroxy-2-methylpropanoate + NAD %3D 2-methyl-3-oxopropanoate + NADH2 Entry name SWISSPROT:MMSB_PSEAE InterPro IPR002204%3B 3hydroxisobut_dh. IPR006115%3B 6PGD_NAD. Pfam PF03446%3B NAD_binding_2%3B 1. Identities %3D 48/218 (22%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene2588	http://www.ncbi.nlm.nih.gov/gene/?term=azo2540
azo2541	azo2541		azo2541	2808905	2809594	-	acyl transferase%2C putative	Possible acyl transferase.%3B~Family membership	gene	gene2589	http://www.ncbi.nlm.nih.gov/gene/?term=azo2541
azo2542	azo2542	fldW	fldW	2809613	2810638	-	probable 4-oxalomesaconate hydratase	4-oxalomesaconate hydratase These proteins are related to the metal-dependent hydrolase superfamily tremblnew|CAE30137: 86%25 identity%2C 93%25 similarity InterPro:IPR006992%3B Amidohydro_2. Pfam:PF04909%3B Amidohydro_2 Absence of traansmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity	gene	gene2590	http://www.ncbi.nlm.nih.gov/gene/?term=azo2542
azo2543	azo2543	pcaK	pcaK	2810683	2812047	-	putative 4-hydroxybenzoate transporter protein	PcaK:4-hydroxybenzoate transporter. TRANSPORTER FOR 4-HYDROXYBENZOATE ALSO REQUIRED FOR CHEMOTAXIS TO AROMATIC ACIDS. Membership of the major facilitator superfamily of transport proteins. 2A0115: benzoate transport%3B~High confidence in function and specificity	gene	gene2591	http://www.ncbi.nlm.nih.gov/gene/?term=azo2543
azo2544	azo2544	fldA	fldA	2812166	2813248	-	conserved hypothetical protein	Hypothetical protein FldA%2C 78%25 identity (86%25 similarity) to TrEMBL%3BQ6N0R5%2CQ8PF30(47%25 identity). 45%25 identity to ybhH of SwissProt%3BP75762(E.coli) Has PF04303%2CProtein of unknown function (DUF453)%3BIPR007400%3B FldA (Q9L3A0) is thought to be involved in the degradation of the polyaromatic hydrocarbon fluorene by Sphingomonas sp. LB126. Has PF01678%2C Diaminopimelate epimerase%3BIPR001653 DAP_epimerase: Diaminopimelate epimerase contains two domains of the same alpha/beta fold%2C both contained in this family.Diaminopimelate epimerase (EC:5.1.1.7) catalyzes the isomeriazation of L%2CL- to D%2CL-meso-diaminopimelate in the biosynthetic pathway leading from aspartate to lysine. This enzyme is a protein of about 30 kDa. No signal peptide or TMH present.%3B~Family membership	gene	gene2592	http://www.ncbi.nlm.nih.gov/gene/?term=azo2544
azo2545	azo2545	bcr1	bcr1	2813370	2814611	-	putative bicyclomycin resistance protein	Bicyclomycin resistance protein homolog. Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance. Probable membrane translocase (By similarity). InterPro: General substrate transporters efflux_Bcr_CflA: drug resistance tran Also show similarity to bssH of bssDCABEFGH operon-genes involved in anaerobic degradation of toulene in denitryfing bacterium%2C Azoarcus strain EbN1%3B~High confidence in function and specificity	gene	gene2593	http://www.ncbi.nlm.nih.gov/gene/?term=azo2545
azo2546	azo2546	nac	nac	2814613	2815779	+	putative nitrogen assimilation regulatory protein	Nitrogen assimilation regulatory protein nac (Nitrogen assimilation control protein). TRANSCRIPTIONAL ACTIVATOR FOR THE HUT PUT AND URE OPERONS AND REPRESSOR FOR THE GDH AND GLTB OPERONS IN RESPONSE TO NITROGEN LIMITATION. NEGATIVE REGULATOR OF ITS OWN EXPRESSION. Similar to SWISSPROT: sprot|NAC_KLEAE (30%25 Klebsiella aerogenes%2C nitrogen assimilation regulatory protein nac (nitrogen assimilation control protein)) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~Specificity unclear	gene	gene2594	http://www.ncbi.nlm.nih.gov/gene/?term=azo2546
azo2547	azo2547		azo2547	2815984	2817636	+	probable methyl-accepting chemotaxis protein	Probable methyl-accepting chemotaxis protein%2C%3B~Specificity unclear	gene	gene2595	http://www.ncbi.nlm.nih.gov/gene/?term=azo2547
azo2548	azo2548	dyp	dyp	2817706	2818587	-	putative iron-dependent peroxidase	Getrichum candidum Dec1%2CDye-decolorizing peroxidase%2CDyP%2C that lacks a typical heme-binding region. Responsible for the decoloration of dyes. DyP degraded phenolic compounds%2C such as 2%2C6-dimethoxyphenol and guaiacol. Hypothetical protein yfeX. ccoO: cytochrome c oxidase cbb3-type su%3B~High confidence in function and specificity	gene	gene2596	http://www.ncbi.nlm.nih.gov/gene/?term=azo2548
azo2549	azo2549	cca2	cca2	2818660	2819562	-	tRNA nucleotidyltransferase	tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme). This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site.%3B~Family membership	gene	gene2597	http://www.ncbi.nlm.nih.gov/gene/?term=azo2549
azo2550	azo2550	mdcF3	mdcF3	2819724	2820674	+	putative malonate transporter	Putative malonate transporter. TREMBL:Q8ZCU0: 38%25 identity%2C 55%25 similarity SPROT:P56949:23%25 identity%2C 41%25 similarity InterPro:IPR004776%3B Auxin_eff. Pfam:PF03547%3B Auxin_ef Signal P predicted nonsecretory protein and TMHMM predicted 9 transmembrane helices. 2a69: Auxin Efflux Carrier%3B~Specificity unclear	gene	gene2598	http://www.ncbi.nlm.nih.gov/gene/?term=azo2550
azo2551	azo2551		azo2551	2821091	2821981	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology with PA3897 of P. aeruginosa of 30%25. InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transport. Pfam: Integral membrane protein DUF6. probable 10 TMHs. no signal peptide%3B~Conserved hypothetical protein	gene	gene2599	http://www.ncbi.nlm.nih.gov/gene/?term=azo2551
azo2552	azo2552	pilU1	pilU1	2822144	2823451	+	twitching motility protein	Tfp pilus retraction protein PilU%2C probable involved in the twitching motility mechanism%2C%3B~High confidence in function and specificity	gene	gene2600	http://www.ncbi.nlm.nih.gov/gene/?term=azo2552
azo2553	azo2553		azo2553	2823562	2824104	+	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. TMH in signal peptide	gene	gene2601	http://www.ncbi.nlm.nih.gov/gene/?term=azo2553
azo2554	azo2554	nodT	nodT	2824434	2825978	+	putative outer membrane efflux protein	Putative outer membrane efflux protein. Homology to nodT from Rhizobium leguminosarum of 20%25 over 432 aa. The OEP family (Outer membrane efflux protein)allow export of a variety of substrates in Gram negative bacteria. Most members of NodT family are likely to export primarily small molecules rather than proteins. InterPro: Outer membrane efflux protein. Pfam: Outer membrane efflux protein Signal peptide no TMHs%3B~Family membership	gene	gene2602	http://www.ncbi.nlm.nih.gov/gene/?term=azo2554
azo2555	azo2555		azo2555	2825984	2826748	+	HlyD family secretion protein	Specificity unclear	gene	gene2603	http://www.ncbi.nlm.nih.gov/gene/?term=azo2555
azo2556	azo2556		azo2556	2826820	2832576	+	hypothetical protein	No Good Homology with any hits in the DB. Conserved Hypothetical Protein%2C34%25 similarity to TrEMBL%3BQ8E9W3. Has PF03160:IPR003644:Calx_beta%3BNa-Ca exchanger/integrin-beta4:This domain has been found in Na-Ca exchangers and integrin subunit beta4%2C as well as some cyanobacterial proteins. Has 3 CA(Cadherin repeats)domains%3BSMART:SM00112%3BIPR002126:Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Has 1 CADG%2CDystroglycan-type cadherin-like domains(SMART%3BSM00736).Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans%2Cyeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.%3B~Family membership	gene	gene2604	http://www.ncbi.nlm.nih.gov/gene/?term=azo2556
azo2557	azo2557		azo2557	2832576	2833937	+	HlyD family secretion protein	Similar to MacA.%3B~Family membership	gene	gene2605	http://www.ncbi.nlm.nih.gov/gene/?term=azo2557
azo2558	azo2558		azo2558	2833940	2836051	+	membrane protein with HlyD domain	Family membership	gene	gene2606	http://www.ncbi.nlm.nih.gov/gene/?term=azo2558
azo2559	azo2559		azo2559	2836162	2836581	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Mflag03001539 of Methylobacillus flagellatus of 38%25 (gi|45521149|ref|ZP_00172671.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2607	http://www.ncbi.nlm.nih.gov/gene/?term=azo2559
azo2560	azo2560		azo2560	2836767	2837564	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc1124 of R. solanacearum of 59%25 (trembl|Q8Y0C0). no signal peptide. no TMHs. no domains reported.	gene	gene2608	http://www.ncbi.nlm.nih.gov/gene/?term=azo2560
azo2561	azo2561		azo2561	2837663	2839060	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to dr0392 of D. radiodurans of 33%25 (trembl|Q9RXC3). Pfam: Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins. no signal peptide. no TMHs	gene	gene2609	http://www.ncbi.nlm.nih.gov/gene/?term=azo2561
azo2562	azo2562	ccp	ccp	2839343	2840350	+	putative cytochrome c peroxidase	Cytochrome c peroxidase (EC 1.11.1.5)%2C an electron-transfer proteins having one or several haem c groups%2Cbound to the protein by one or%2C more generally%2C two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Signal peptide.%3B~High confidence in function and specificity	gene	gene2610	http://www.ncbi.nlm.nih.gov/gene/?term=azo2562
azo2563	azo2563		azo2563	2840530	2840916	+	conserved hypothetical secreted protein	Conserved hypothetical secreted secreted protein. Homology to bb1301 of B. bronchiseptica of 59%25 (trembl|Q7WMT9). Pfam: Lipoprotein_15. This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2611	http://www.ncbi.nlm.nih.gov/gene/?term=azo2563
azo2564	azo2564		azo2564	2840924	2841424	+	putative RNA polymerase sigma factor	Putative RNA polymerase sigma factor%2C57%25 Identity to TrEMBL%3BQ7VV01%2C 49%25 Identity to TrEMBL%3BQ8XV48%2C53%25 to Q63LJ3. Has PF04542%2C Sigma-70 region 2%3B IPR007627%2CSigma70_r2%3B Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix%2C interacts with the clamp domain of the largest polymerase subunit%2Cbeta prime. The aromatic residues of the recognition helix%2C found at the C-terminus of this domain are though to mediate strand separation%2C thereby allowing transcription initiation. Has PF04545%2C Sigma-70%2C region 4%3BIPR007630%2C Sigma70_r4%3B Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works%2C the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.	gene	gene2612	http://www.ncbi.nlm.nih.gov/gene/?term=azo2564
azo2565	azo2565		azo2565	2841421	2842239	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to BB1303 of Bordetella bronchiseptica of 50%25 (trembl|Q7WMT7). No domains predicted. TMHMM2 reporting 1 TMH present. No signal peptide present.%3B~Conserved hypothetical protein	gene	gene2613	http://www.ncbi.nlm.nih.gov/gene/?term=azo2565
azo2566	azo2566		azo2566	2842255	2843214	-	hypothetical protein	Hypothetical protein%2C53%25 identity to TrEMBL:Q8YF53%2CHypothetical protein BMEI1674 [BMEI1674] [Brucella melitensis] Has IPR000157:TIR domain.%3B~Family membership%3B~ORF6	gene	gene2614	http://www.ncbi.nlm.nih.gov/gene/?term=azo2566
azo2567	azo2567		azo2567	2843306	2844313	-	putative LysR-family transcriptional regulator protein.	Putative LysR-family transcriptional regulator protein.62%25 identity to TrEMBL%3BQ63NK9%2CQ8XQV8%2CQ62B59%2CQ8VL17. PF00126%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%3BIPR000847%2C HTH_LysR%3B Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse%2Cbut for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family%2C the lysR family%2C groups together a range of proteins%2C including ampR%2C catM%2C catR%2C cynR%2C cysB%2C gltC%2C iciA%2C ilvY%2C irgB%2ClysR%2C metR%2C mkaC%2C mleR%2C nahR%2C nhaR%2C nodD%2C nolR%2C oxyR%2CpssR%2C rbcR%2C syrM%2C tcbR%2C tfdS and trpI. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini. Has PF03466%2C LysR substrate binding domain%3B IPR005119%2C LysR_subst%3B The structure of this domain is known and is	gene	gene2615	http://www.ncbi.nlm.nih.gov/gene/?term=azo2567
azo2568	azo2568		azo2568	2844563	2845765	+	membrane fusion protein	HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C%3B~Family membership	gene	gene2616	http://www.ncbi.nlm.nih.gov/gene/?term=azo2568
azo2569	azo2569		azo2569	2845776	2848967	+	RND efflux transporter%2C permease protein	AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q92U15 (38%25 identity)%3B TREMBL:Q7NE92 (38%25 identity). InterPro (IPR000731): Sterol-sensing 5TM box. InterPro (IPR004764): Hydrophobe/amphiphile efflux-1 HAE1. InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear	gene	gene2617	http://www.ncbi.nlm.nih.gov/gene/?term=azo2569
azo2570	azo2570	opcM2	opcM2	2848984	2850510	+	probable outer membrane efflux protein	Probable outer membrane efflux protein. Homology to opcM from B. cepacia of 40%25 Component of an efflux system that confers mutiple antibiotic resistence. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHS%3B~Family membership	gene	gene2618	http://www.ncbi.nlm.nih.gov/gene/?term=azo2570
azo2571	azo2571		azo2571	2850539	2851069	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to VV1824 of V.vulnificus of 37%25 (trembl:Q7MKG9). No domains predicted. No signal peptide or TMH reported present.	gene	gene2619	http://www.ncbi.nlm.nih.gov/gene/?term=azo2571
azo2572	azo2572		azo2572	2851066	2851710	-	hypothetical membrane protein	Hypothetical membrane protein. no homology to the data bank. no domains predicted. no signal peptide. 1 TMHs	gene	gene2620	http://www.ncbi.nlm.nih.gov/gene/?term=azo2572
azo2573	azo2573	fsr	fsr	2851794	2853032	-	putative fosmidomycin resistance protein	A gene conferring resistance to fosmidomycin (Fs) encode a putative polypeptide of 406 amino acids (aa) with a molecular weight of 43303 in E.coli. 23%25 similarity to B. japonicum fsr. A comparison between the aa sequence of Fsr and sequences in a protein database revealed 18%25 homology to the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. Hydropathy analysis of the Fsr protein revealed twelve putative transmembrane segments. Fsr does not have any direct effect on the biosynthesis of isoprenoid in E. coli%2C and that the mechanism for FsR involves the efflux of the drug by a process that is facilitated by Fsr. (Ref: Fujisaki%2CS. et al.%2C 1996)%3B~High confidence in function and specificity	gene	gene2621	http://www.ncbi.nlm.nih.gov/gene/?term=azo2573
azo2574	azo2574		azo2574	2853125	2853910	+	putative AraC-family transcriptional regulator	Putative AraC-family transcriptional regulator%2C%3B~Family membership	gene	gene2622	http://www.ncbi.nlm.nih.gov/gene/?term=azo2574
azo2575	azo2575	gacS	gacS	2853962	2856457	-	putative two-component hybrid sensor and regulator	Putative two-component hybrid sensor and regulator%2C%3B~Family membership	gene	gene2623	http://www.ncbi.nlm.nih.gov/gene/?term=azo2575
azo2576	azo2576	dapB	dapB	2856467	2857276	-	DapB protein	Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine%2C the NAD or NADP-dependent reduction of 2%2C3-dihydrodipicolinate into 2%2C3%2C4%2C5-tetrahydrodipicolinate. Similar to sprot|DAPB_PSESM (57%25)%2C to sprot|DAPB_RALSO (58%25) and to sprot|DAPB_ECOLI (54%25). TIGRfam (TIGR00036): Dihydrodipicolinate reductase Pfam (PF01113): Dihydrodipicolinate reductase%3B~High confidence in function and specificity	gene	gene2624	http://www.ncbi.nlm.nih.gov/gene/?term=azo2576
azo2577	azo2577	omlA	omlA	2857314	2857823	-	putative outer membrane lipoprotein OmlA	Putative outer membrane lipoprotein OmlA precursor. Homology to omlA of P. aeruginosa of 33%25 (sprot|OMLA_PSEAE) MAY HAVE A STRUCTURAL ROLE IN MAINTAINING THE CELL ENVELOPE INTEGRITY. Pfam: SmpA/OmlA family no signal protein 1 TMH%3B~Conserved hypothetical protein	gene	gene2625	http://www.ncbi.nlm.nih.gov/gene/?term=azo2577
azo2578	azo2578	fur	fur	2857844	2858281	+	putative ferric uptake regulation protein	Ferric uptake regulation protein (Ferric uptake regulator)Fur. Acts as a global negative controlling element employing Fe(2+) as a cofactor to bind the operator of the repressed genes. Regulator for biosynthesis of the siderophore alcaligin E. InterPro: Ferric uptake regulator family TIGR00011: conserved hypothetical protein%3B~High confidence in function and specificity	gene	gene2626	http://www.ncbi.nlm.nih.gov/gene/?term=azo2578
azo2579	azo2579	recN	recN	2858307	2859974	-	DNA repair protein	DNA repair protein recN (Recombination protein N). MAY BE INVOLVED IN RECOMBINATIONAL REPAIR OF DAMAGED DNA. recN: DNA repair protein RecN%3B~High confidence in function and specificity	gene	gene2627	http://www.ncbi.nlm.nih.gov/gene/?term=azo2579
azo2580	azo2580	ppnK	ppnK	2860012	2860896	-	probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase(Poly(P)/ATP NAD kinase). Catalyzes the phosphorylation of NAD to NADP. Utilizes ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. 34%25 ATP_NADK.InterPro: Domain of unknown function DUF15 Pfam:PF01513%3B NAD_kinase%3B 1. TIGR:VC0853.%3B~High confidence in function and specificity	gene	gene2628	http://www.ncbi.nlm.nih.gov/gene/?term=azo2580
azo2581	azo2581	hrcA	hrcA	2861000	2862028	+	heat-inducible transcriptional repressor	Heat-inducible transcription repressor HrcA. Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons. Similar to SWISSPROT: sprot|HRCA_RALSO (62%25 Ralstonia solanacearum (Pseudomonas solanacearum)%2C heat-inducible transcription repressor HrcA) / sprot|HRCA_XANCP (46%25 Xanthomonas campestris (pv. campestris)%2C heat-inducible transcription repressor HrcA) InterPro: IPR002571 Negative regulator of class I heat shock protein. Pfam: PF01628 HrcA protein C terminal domain. TIGRFAM: TIGR00331 heat-inducible transcription repressor HrcA.%3B~High confidence in function and specificity	gene	gene2629	http://www.ncbi.nlm.nih.gov/gene/?term=azo2581
azo2582	azo2582	hemH	hemH	2862075	2863166	+	Ferrochelatase	Protoheme ferro-lyase (Heme synthetase). Catalyzes the ferrous insertion into protoporphyrin IX. TIGRFAM: hemH: ferrochelatase%3B~High confidence in function and specificity	gene	gene2630	http://www.ncbi.nlm.nih.gov/gene/?term=azo2582
azo2583	azo2583		azo2583	2863166	2863522	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rs02279 of R. solanacearum of 53%25 (trembl|Q8Y388(SRS)). No domains predicted. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene2631	http://www.ncbi.nlm.nih.gov/gene/?term=azo2583
azo2584	azo2584		azo2584	2863580	2864590	+	conserved hypothetical protein	Similar to TREMBL:Q7NTT5 (32%25 identity).	gene	gene2632	http://www.ncbi.nlm.nih.gov/gene/?term=azo2584
azo2585	azo2585	yloP	yloP	2864625	2865989	-	putative protein kinase	Putative serine/threonine kinase%2C%3B~Family membership	gene	gene2633	http://www.ncbi.nlm.nih.gov/gene/?term=azo2585
azo2586	azo2586		azo2586	2866089	2866193	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2634	http://www.ncbi.nlm.nih.gov/gene/?term=azo2586
azo2587	azo2587		azo2587	2866190	2867509	+	conserved hypothetical protein	probable atrazine chlorohydrolase [EC:3.8.1.8] InterPro: Chlorohydrolase trembl:Q7NZ90%3B pir:B83249	gene	gene2635	http://www.ncbi.nlm.nih.gov/gene/?term=azo2587
azo2588	azo2588	ompA1	ompA1	2867629	2868345	+	outer membrane protein A precursor	Outer membrane protein P.III precursor (Gonococcal protein III) (PIII). InterPro: Bacterial outer membrane protein%3B~High confidence in function and specificity	gene	gene2636	http://www.ncbi.nlm.nih.gov/gene/?term=azo2588
azo2589	azo2589	ubiG	ubiG	2868451	2869152	+	3-demethylubiquinone-9 3-O-methyltransferase	3%2C4- dihydroxy-5-hexaprenylbenzoate methyltransferase (DHHB methyltransferase). Belongs to the ubiquinone biosynthesis pathway%2C by similarity. InterPro: SAM (and some other nucleotide) binding motif%3B~High confidence in function and specificity	gene	gene2637	http://www.ncbi.nlm.nih.gov/gene/?term=azo2589
azo2590	azo2590		azo2590	2869577	2870845	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA5327 of Azoarcus sp. EbN1 of 44%25 (gnl|keqq|eba:ebA5327(KEGG)). Pfam: Polysaccharide pyruvyl transferase Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. no signal peptide. no TMHs	gene	gene2639	http://www.ncbi.nlm.nih.gov/gene/?term=azo2590
azo2591	azo2591		azo2591	2871202	2873805	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03002418 of Dechloromonas aromatica of 58%25 (gi|53730135|ref|ZP_00150721.2|(NBCI ENTREZ)). No domains predicted. No TMHs. signal peptide present.	gene	gene2640	http://www.ncbi.nlm.nih.gov/gene/?term=azo2591
azo2592	azo2592		azo2592	2873818	2874735	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03002419 of Dechloromonas aromatica of 51%25 (gi|41723832|ref|ZP_00150722.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.	gene	gene2641	http://www.ncbi.nlm.nih.gov/gene/?term=azo2592
azo2593	azo2593		azo2593	2874754	2876877	+	conserved hypothetical secreted protein	conserved hypothetical secreted protein. Homology to Daro03002420 of Dechloromonas aromatica of 39%25 (gi|41723833|ref|ZP_00150723.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2642	http://www.ncbi.nlm.nih.gov/gene/?term=azo2593
azo2594	azo2594		azo2594	2876874	2878430	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV2219 of Chromobacterium violaceum of 36%25 (trembl|Q7NVX2(SRS)). no domains predicted. no signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene2643	http://www.ncbi.nlm.nih.gov/gene/?term=azo2594
azo2595	azo2595		azo2595	2878452	2879951	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03002422 of Dechloromonas aromatica of 63%25 (gi|41723835|ref|ZP_00150725.1|(NBCI ENTREZ)). No domains predicted. No TMHs. signal peptide present.%3B~Conserved hypothetical protein	gene	gene2644	http://www.ncbi.nlm.nih.gov/gene/?term=azo2595
azo2596	azo2596		azo2596	2879974	2880957	+	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs	gene	gene2645	http://www.ncbi.nlm.nih.gov/gene/?term=azo2596
azo2597	azo2597		azo2597	2880971	2882566	+	hypothetical protein with TIR domain	Hpyothetical protein with TIR domain. no homology to the data bank. Interpro: TIR domain Pfam: TIR doamin. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY)%2C box 2 (GYKLC-RD-PG)%2C and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signaling%2Cwhereas box 3 is primarily involved in directing localization of receptor%2C perhaps through interactions with cytoskeletal elements. no signal. peptide 2 TMHs	gene	gene2646	http://www.ncbi.nlm.nih.gov/gene/?term=azo2597
azo2598	azo2598		azo2598	2882757	2884553	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to SMb20495 of S.meliloti of 45%25 (tremble:Q92W68). Has 3 TPR repeats(IPR001440)(SMART:SM00028):The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins. It mediates protein-protein interactions and the assembly of multiprotein complexes. The TPR motif consists of 3 tandem-repeats of 34 amino acids residues%2C although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms%2C ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes%2C such as cell cycle regulation%2C transcriptional control%2Cmitochondrial and peroxisomal protein transport%2Cneurogenesis and protein folding. No TMH being reported present. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene2647	http://www.ncbi.nlm.nih.gov/gene/?term=azo2598
azo2599	azo2599	abp1	abp1	2884563	2884940	-	putative auxin-binding protein 1 precursor	Auxin-binding protein 1 precursor(ABP).This is probably a receptor for the plant hormone auxin. 34%25 Auxin_BP.IPR007113%3B Cupin_sup.IPR000886%3BER_target_S. Pfam:PF02041%3B Auxin_BP%3B 1.%3B~Function unclear	gene	gene2648	http://www.ncbi.nlm.nih.gov/gene/?term=azo2599
azo2600	azo2600		azo2600	2885097	2885993	+	transcriptional regulator%2C LysR family%2Cputative	Transcriptional regulator%2C LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 37%25 1 helixturnhelix PF03466 LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~Specificity unclear	gene	gene2649	http://www.ncbi.nlm.nih.gov/gene/?term=azo2600
azo2601	azo2601		azo2601	2886006	2886314	-	putative ferredoxin subunit of nitrite reductase	Ferredoxin subunits of nitrite reductase. THIS SUBUNIT IS A 2FE-2S FERREDOXIN THAT TRANSFERS ELECTRONS TO IRON SULFUR PROTEIN COMPONENTS (ISP). Similar to nasE%2Cfrom S.aureus_N315 a naphthalene 12-dioxygenase system ferredoxin component.%3B~High confidence in function and specificity	gene	gene2650	http://www.ncbi.nlm.nih.gov/gene/?term=azo2601
azo2602	azo2602	infA1	infA1	2886484	2886741	-	translation initiation factor IF-1	Translation initiation factor IF-1. No specific function has so far been attributed to this initiation factor%3B however it seems to stimulate more or less all the activities of the other two initiation factors IF-2 and IF-3.%3B~Family membership	gene	gene2651	http://www.ncbi.nlm.nih.gov/gene/?term=azo2602
azo2603	azo2603		azo2603	2886879	2887082	-	cold shock-like protein	Cold shock-like protein%2C%3B~High confidence in function and specificity	gene	gene2652	http://www.ncbi.nlm.nih.gov/gene/?term=azo2603
azo2604	azo2604		azo2604	2887497	2888339	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ORF62 of Pseudomonas of 60%25 (trembl|Q936Z8(SRS)). InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter. Pfam: Integral membrane protein DUF6. probable 9 TMHs. signal peptide%3B~Conserved hypothetical protein	gene	gene2653	http://www.ncbi.nlm.nih.gov/gene/?term=azo2604
azo2605	azo2605		azo2605	2888355	2888876	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to cp98 of P. aeruginosa of 33%25 (tremblnew|AAP22587). no domains predicted. no signal peptide. 2 TMHs.%3B~Conserved hypothetical protein	gene	gene2654	http://www.ncbi.nlm.nih.gov/gene/?term=azo2605
azo2606	azo2606		azo2606	2889090	2889527	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to gsu0250 of G. sulfurreducens of 46%25 (tremblnew|AAR33584). no domains predicted. no signal peptide. 3 TMHs.%3B~Conserved hypothetical protein	gene	gene2655	http://www.ncbi.nlm.nih.gov/gene/?term=azo2606
azo2607	azo2607	panE2	panE2	2889532	2890509	-	2-dehydropantoate 2-reductase	Ketopantoate reductase (KPA reductase) (KPR). Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). TIGRFAM: apbA_panE: 2-dehydropantoate 2-reductas%3B~High confidence in function and specificity	gene	gene2656	http://www.ncbi.nlm.nih.gov/gene/?term=azo2607
azo2608	azo2608		azo2608	2890560	2891330	-	conserved hypothetical protein	42%25 Aldolase_II_N.Class II Aldolase and Adducin N-terminal domain. Pfam: PF00596%3B Aldolase_II%3B 1. TIGR: PP2871.%3B~High confidence in function and specificity	gene	gene2657	http://www.ncbi.nlm.nih.gov/gene/?term=azo2608
azo2609	azo2609		azo2609	2891520	2892491	-	conserved hypothetical endonuclease/exonuclease/phosphatase family protein	Conserved hypothetical endonuclease/exonuclease/phosphatase family protein. Homology to RPBDRAFT_0804 of Rhodopseudomonas palustris HaA2 of 315. Pfam: Exo_endo_phos. Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g APEX1_HUMAN%2C DNase I proteins EC:3.1.21.1 e.g. DNAS1_HUMAN%2C Synaptojanin an inositol-1%2C4%2C5-trisphosphate phosphatase EC:3.1.3.56 SYNJ1_HUMAN%2C Sphingomyelinase EC:3.1.4.12 PHL2_BACCE and Nocturnin NOCT_MOUSE. no TMHs. no signal peptide.%3B~Conserved hypothetical protein	gene	gene2658	http://www.ncbi.nlm.nih.gov/gene/?term=azo2609
azo2610	azo2610	fhuA2	fhuA2	2892605	2894734	-	putative ferrichrome-iron TonB-dependent receptor	In E.coli this receptor binds the ferrichrome-iron ligand. It interacts with the tonB protein%2C which is responsible for energy coupling of the ferrichrome-promoted iron transport system. Acts as a receptor for bacteriophage T5 as well as T1%2C phi80 and colicin M. Binding of T5 triggers the opening of a high conductance ion channel. Can also transport the antibiotic albomycin. Signal peptide.%3B~Specificity unclear	gene	gene2659	http://www.ncbi.nlm.nih.gov/gene/?term=azo2610
azo2611	azo2611		azo2611	2894837	2895472	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rs00511 of R. solanacearum of 32%25 (trembl|Q8XUW6(SRS)). No domains predicted. singal peptide. 2 TMHs%3B~Conserved hypothetical protein	gene	gene2660	http://www.ncbi.nlm.nih.gov/gene/?term=azo2611
azo2612	azo2612		azo2612	2895707	2896642	-	GAF/GGDEF-domain containing protein	GAF/GGDEF-domain containing protein%2C%3B~Conserved hypothetical protein	gene	gene2661	http://www.ncbi.nlm.nih.gov/gene/?term=azo2612
azo2613	azo2613		azo2613	2896686	2897087	-	conserved hypothetical protein	Hypothetical protein%2C 50%25 identity (59%25 simialrity)to TrEMBL%3BQ92TJ5. Has PF04828%2C Protein of unknown function (DUF636)%3BIPR006913%2C GFA%3BThis family of proteins has no known function%2C but several strongly conserved cysteine residues. Glutathione-dependent formaldehyde-activating enzymes catalyze the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues. NO Signal peptide or TMH present.%3B~Function unclear	gene	gene2662	http://www.ncbi.nlm.nih.gov/gene/?term=azo2613
azo2614	azo2614		azo2614	2897216	2897596	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Saro02001549 of Novosphingobium aromaticivorans of 37%25 (gi|48849438|ref|ZP_00303681.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene2663	http://www.ncbi.nlm.nih.gov/gene/?term=azo2614
azo2615	azo2615		azo2615	2897663	2898382	-	hypothetical protein	Hypothetical protein%2C45%25 similarity to TrEMBL%3BQ6LHM7. No Good homology over entire length in the DB. No signal Peptide or TMH present.%3B~Function unclear	gene	gene2664	http://www.ncbi.nlm.nih.gov/gene/?term=azo2615
azo2616	azo2616		azo2616	2898514	2898939	-	lactoylglutathione lyase	Puatative Glyoxalase sub unit%2C 37%25 identitcal to TrEMBL%3BQ89MF5 Has PF00903%2C Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3BIPR004360%2C Gly_bleo_diox: Glyoxalase I%2C catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid . The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. This domain is found in other related proteins including the Bleomycin resistance protein and dioxygenases eg. 4-hydroxyphenylpyruvate dioxygenase. No SIgnal Peptide or TMH reported present.%3B~Family membership	gene	gene2665	http://www.ncbi.nlm.nih.gov/gene/?term=azo2616
azo2617	azo2617		azo2617	2898954	2899577	-	hydrolase%2C haloacid dehalogenase-like family	TREMBL:Q89L44: 48%25 identity.64%25 similarity. probable haloacid dehalogenase-like hydrolase. InterPro:IPR005834%3B Hydrolase. Pfam:PF00702%3B Hydrolase%3B Phosphoglycolate phosphatase(PGP). TIGR00099: conserved hypothetical prot%3B~Function unclear	gene	gene2666	http://www.ncbi.nlm.nih.gov/gene/?term=azo2617
azo2618	azo2618	soxR	soxR	2899574	2900011	-	probable redox-sensitive transcriptional activator	Probable redox-sensitive transcriptional activator%2C%3B~High confidence in function and specificity	gene	gene2667	http://www.ncbi.nlm.nih.gov/gene/?term=azo2618
azo2619	azo2619		azo2619	2900083	2900940	+	putative methyltransferase	Similar to TREMBL:Q98BY2 (39%25 identity)%3B TREMBL:Q9A2R1 (40%25 identity)%3B TREMBL:Q89KG6 (34%25 identity). Pfam (PF01209): ubiE/COQ5 methyltransferase family.%3B~Function unclear	gene	gene2668	http://www.ncbi.nlm.nih.gov/gene/?term=azo2619
azo2620	azo2620		azo2620	2900950	2901330	-	hypothetical membrane protein	Hypothetical membrane protein. no homology to the data bank. no domains predicted signal peptide. 3 TMHs	gene	gene2669	http://www.ncbi.nlm.nih.gov/gene/?term=azo2620
azo2621	azo2621		azo2621	2901512	2902048	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to VPA0111 of V.parahaemolyticus of 62%25 (trembl:Q87JY7). Has (IPR010323)PF06041%2C Bacterial protein of unknown function (DUF924)%3BThis family consists of several hypothetical bacterial proteins of unknown function. NO signal peptide or TMH present.	gene	gene2670	http://www.ncbi.nlm.nih.gov/gene/?term=azo2621
azo2622	azo2622		azo2622	2902117	2903265	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein	gene	gene2671	http://www.ncbi.nlm.nih.gov/gene/?term=azo2622
azo2623	azo2623		azo2623	2903667	2904227	-	conserved hypothetical protein		gene	gene2672	http://www.ncbi.nlm.nih.gov/gene/?term=azo2623
azo2624	azo2624		azo2624	2904323	2904757	+	hypothetical truncated transposase	Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 86%25 (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.	gene	gene2673	http://www.ncbi.nlm.nih.gov/gene/?term=azo2624
azo2625	azo2625		azo2625	2904840	2904950	+	hypothetical truncated transposase	Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 87%25 (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.	gene	gene2674	http://www.ncbi.nlm.nih.gov/gene/?term=azo2625
azo2626	azo2626		azo2626	2904985	2905281	+	hypothetical truncated transposase	Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 86%25 (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.%2C%3B~Family membership	gene	gene2675	http://www.ncbi.nlm.nih.gov/gene/?term=azo2626
azo2627	azo2627		azo2627	2905435	2906151	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of Polaromanas sp JS666 of 41%25 No domain predicted. No signal peptide No TMHs	gene	gene2676	http://www.ncbi.nlm.nih.gov/gene/?term=azo2627
azo2628	azo2628		azo2628	2906296	2906745	-	hypothetical membrane protein	Hypothetical membrane protein. Homology to yptb3870 of Y. pseudotuberculosis of 29%25 (tremble:Q664A2). No domains predicted. No signal peptide. 1 TMHs	gene	gene2677	http://www.ncbi.nlm.nih.gov/gene/?term=azo2628
azo2629	azo2629		azo2629	2907060	2907413	-	conserved hypothetical membrane protein	Conserved hypothetical protein. Homology to an orf of Exiguobacterium sp. 255-15 (ZP_00355791). No domains predicted. No signal peptide. 2 TMHs	gene	gene2678	http://www.ncbi.nlm.nih.gov/gene/?term=azo2629
azo2630	azo2630		azo2630	2907867	2911886	-	cobalamin biosynthesis protein%2C putative	CobN Magnesium Chelatase family protein%2C by similarity.%3B~Family membership	gene	gene2679	http://www.ncbi.nlm.nih.gov/gene/?term=azo2630
azo2631	azo2631		azo2631	2911883	2912239	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE0632 of Nitrosomonas europaea of 42%25 (trembl|Q82WN6(SRS)). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene2680	http://www.ncbi.nlm.nih.gov/gene/?term=azo2631
azo2632	azo2632		azo2632	2912250	2912711	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA1924 of P. aeruginosa of 43%25 (trembl|Q9I2I0(SRS)). No domains predicted. no signal peptide. probable 3TMHS%3B~Conserved hypothetical protein	gene	gene2681	http://www.ncbi.nlm.nih.gov/gene/?term=azo2632
azo2633	azo2633	tam	tam	2913014	2913775	+	probable trans-aconitate 2-methyltransferase	Probable trans-aconitate 2-methyltransferase. Homology to tam of E. coli of 48%25 (sprot|TAM_ECOLI). Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate (By similarity). Pfam: PTS system%2C Lactose/Cellobiose specific no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2682	http://www.ncbi.nlm.nih.gov/gene/?term=azo2633
azo2634	azo2634		azo2634	2913806	2914276	-	hypothetical membrane protein	Hypothetical membrane protein. no homology to the data bank. no domains predicted. 1 TMHs. no signal peptide	gene	gene2683	http://www.ncbi.nlm.nih.gov/gene/?term=azo2634
azo2635	azo2635		azo2635	2914273	2914899	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2684	http://www.ncbi.nlm.nih.gov/gene/?term=azo2635
azo2636	azo2636		azo2636	2915051	2915770	-	putative CbbY family protein	TREMBL:Q7MF75: 35%25 identity%3B 50%25 similarity. IPR006323%3B Phosphonoacetaldehyde hydrolase IPR010976%3B Beta-phosphoglucomutase hydrolase This group of sequences represent part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (IPR005834). The superfamily is defined by the presence of three short catalytic motifs. Hypothetical protein yhcW. InterPro:IPR006402%3B HAD-SF-IA-v3. IPR005833%3B Halogease/hydrolase. Pfam: PF00702%3B Hydrolase Absence of signal peptide (Signal P predicted) and transmembrane helices (TMHMM predicted) IPR005834%3B Hydrolase. TIGR00099: conserved hypothetical protein%3B~Family membership	gene	gene2685	http://www.ncbi.nlm.nih.gov/gene/?term=azo2636
azo2637	azo2637		azo2637	2915888	2916406	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RSc0334 of R. solanacearum of 59%25 (sprot:Y334_RALSO). Pfam: Appr-1-p processing enzyme. No signal peptide. No TMHs.	gene	gene2686	http://www.ncbi.nlm.nih.gov/gene/?term=azo2637
azo2638	azo2638		azo2638	2916466	2918697	-	conserved hypothetical ATPase	Conserved hypothetical ATPase. Homology to rsc1961 of R. solanacearum of 37%25 (trembl|Q8XY02). Pfam: Atpase familly associated with various cellular activities (domaine 1 from 300 aa to 499 aa%2C domaine 2 from 543 to 723 aa). no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2687	http://www.ncbi.nlm.nih.gov/gene/?term=azo2638
azo2639	azo2639		azo2639	2918694	2919161	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2688	http://www.ncbi.nlm.nih.gov/gene/?term=azo2639
azo2640	azo2640	mdcH	mdcH	2919238	2920236	+	putative transcriptional factor	Putative transcriptional factor	gene	gene2689	http://www.ncbi.nlm.nih.gov/gene/?term=azo2640
azo2641	azo2641		azo2641	2920329	2921015	-	hypothetical protein	Hypothetical protein. No homology to the data base. No domains predicted. No TMHs. No signal peptide.	gene	gene2690	http://www.ncbi.nlm.nih.gov/gene/?term=azo2641
azo2642	azo2642		azo2642	2921150	2921314	-	Hypothetical protein	Hypothetical protein%2C very weak homology with any hits in the database. Has %2C No domains%2C repeats%2C motifs or features could be predicted with confidence above threshold scores.	gene	gene2691	http://www.ncbi.nlm.nih.gov/gene/?term=azo2642
azo2643	azo2643		azo2643	2921344	2921907	-	putative dual specificity protein phosphatase	Putative dual specificity protein phosphatase%2C%3B~Function unclear	gene	gene2692	http://www.ncbi.nlm.nih.gov/gene/?term=azo2643
azo2644	azo2644	draG2	draG2	2922087	2923211	+	putative ADP-ribosyl-[dinitrogen reductase] hydrolase	Putative ADP-ribosyl-[dinitrogen reductase] hydrolase. Homology to draG of R. rubrum of 24%25 (sprot|DRAG_RHORU) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. Pfam: ADP-ribosylglycohydrolase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2693	http://www.ncbi.nlm.nih.gov/gene/?term=azo2644
azo2645	azo2645		azo2645	2923248	2923661	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2694	http://www.ncbi.nlm.nih.gov/gene/?term=azo2645
azo2646	azo2646		azo2646	2923798	2924244	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Bucepa03000629 of Burkholderia cepacia of 47%25 (gi|46324491|ref|ZP_00224852.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.	gene	gene2695	http://www.ncbi.nlm.nih.gov/gene/?term=azo2646
azo2647	azo2647	dlhH	dlhH	2924331	2925149	-	putative carboxymethylenebutenolidase	Similar to SWISSPROT:P71505 (50%25 identity)%2CSWISSPROT:Q8X8L4 (49%25 identity). Pfam (PF01738): Dienelactone hydrolase family.%3B~High confidence in function and specificity	gene	gene2696	http://www.ncbi.nlm.nih.gov/gene/?term=azo2647
azo2648	azo2648		azo2648	2925146	2926453	-	probable MFS permease	Region start changed from 2926444 to 2926426 (-18 bases)	gene	gene2697	http://www.ncbi.nlm.nih.gov/gene/?term=azo2648
azo2649	azo2649		azo2649	2926624	2928333	-	GGDEF family protein	GGDEF family protein%2C%3B~Conserved hypothetical protein	gene	gene2698	http://www.ncbi.nlm.nih.gov/gene/?term=azo2649
azo2650	azo2650		azo2650	2928487	2928744	-	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. TMH in signal peptide	gene	gene2699	http://www.ncbi.nlm.nih.gov/gene/?term=azo2650
azo2651	azo2651		azo2651	2928823	2929257	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebD23 of Azoarcus sp. EbN1 of 44%25 (gnl|keqq|eba:ebD23(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene2700	http://www.ncbi.nlm.nih.gov/gene/?term=azo2651
azo2652	azo2652		azo2652	2929286	2929984	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CC0717 of Caulobacter crescentus of 66%25 (trembl|Q9AA89(SRS)). Also homology to noduline 21 of G. max of 33%25 (sprot|NO21_SOYBN(SRS)). Has PF01988%2C(IPR008217)Integral membrane protein DUF125%3BThis family of predicted integral membrane proteins has no known function. However it does include P47818%2C that may have a role in regulating calcium levels. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene2701	http://www.ncbi.nlm.nih.gov/gene/?term=azo2652
azo2653	azo2653	pitA	pitA	2930124	2931599	+	putative phosphate transporter	Probable low-affinity phosphate transporter protein%2C PitA. Involved in phosphate transport depending on the proton motive force in E.coli. Similar to Pho-4%2C a cation-phosphate symporter in N. crassa. InterPro: Phosphate transporter family Signal peptide.%3B~High confidence in function and specificity	gene	gene2702	http://www.ncbi.nlm.nih.gov/gene/?term=azo2653
azo2654	azo2654		azo2654	2931633	2932103	-	lactoylglutathione lyase	Glyoxalase family protein%2C 54%25 identity (67%25 similarity) to TrEMBL%3BQ88HB6. Has PF00903%2CGlyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3BIPR004360%2C Gly_bleo_diox: Glyoxalase I catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. This domain is found in other related proteins including the Bleomycin resistance protein and dioxygenases eg. 4-hydroxyphenylpyruvate dioxygenase.%3B~Family membership	gene	gene2703	http://www.ncbi.nlm.nih.gov/gene/?term=azo2654
azo2655	azo2655		azo2655	2932255	2933628	+	hypothetical membrane protein	Hypothetical membrane protein. No homology of the entire protein to a protein of similar length. no domains predicted. singal peptie. 6 TMHs	gene	gene2704	http://www.ncbi.nlm.nih.gov/gene/?term=azo2655
azo2656	azo2656		azo2656	2933625	2933957	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to S1719 of Photobacterium profundum of 73%25 (tremblnew|CAG22368). Has PF02694%2C Uncharacterized BCR%2CYnfA/UPF0060 family%3BIPR003844%3BThis entry describes integral membrane proteins of unknown function. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene2705	http://www.ncbi.nlm.nih.gov/gene/?term=azo2656
azo2657	azo2657	fpr2	fpr2	2934063	2934839	+	ferredoxin-NADP+ reductase	Ferredoxin-NADP+ reductase (EC 1.18.1.2) Homology to fpr of A. vinelandii of 75%25 (sprot|FENR_AZOVI). CATALYTIC ACTIVITY: Reduced ferredoxin + NADP(+) %3D oxidized ferredoxin + NADPH. Interpro: Oxidoreductase FAD and NAD8P)-binding domain (IPR001433)%3B NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidoreductase FAD-binding doamin%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2706	http://www.ncbi.nlm.nih.gov/gene/?term=azo2657
azo2658	azo2658	trxA2	trxA2	2934938	2935267	+	putative thioredoxin-disulfide reductase	Putative thioredoxin-disulfide reductase. Homology to trxA (ECs4714) of E. coli of 27%25. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a dislufide. InterPro: Thioredoxin (IPR006662) no TMHs%3B~Family membership	gene	gene2707	http://www.ncbi.nlm.nih.gov/gene/?term=azo2658
azo2659	azo2659		azo2659	2935396	2935866	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PJS6w01001981 of Polaromonas sp. JS666 of 70%25 (gi|54030965|ref|ZP_00363100.1|(NBCI ENTREZ)). No domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2708	http://www.ncbi.nlm.nih.gov/gene/?term=azo2659
azo2660	azo2660	ybcL	ybcL	2935880	2936356	+	conserved hypothetical protein	Hypothetical protein TC0109. TREMBL:Q8XTTO: 64%25 identity%2C 75%25 similarity. This entry describes a family of conserved hypothetical proteins with no known function. InterPro:IPR005247%3B Cons_hypoth481. IPR008914%3B PEBP. Pfam: PF01161%3B PBP Absence of signal peptide. Absence of TMH's%3B~Function unclear	gene	gene2709	http://www.ncbi.nlm.nih.gov/gene/?term=azo2660
azo2661	azo2661		azo2661	2936540	2937082	+	hypothetical protein	Hypothetical protein which carries at the C-terminus a DnaJ N-terminal domain. InterPro: DnaJ N-terminal domain (IPR001623) Pfam: DnaJ domain no signal peptide no TMHs	gene	gene2710	http://www.ncbi.nlm.nih.gov/gene/?term=azo2661
azo2662	azo2662		azo2662	2937338	2938783	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA2897 of Azoarcus sp. EbN1 of 61%25 (gnl|keqq|eba:ebA2897(KEGG)). Has PF01936%2C Protein of unknown function DUF88%3B(IPR002790). This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates%2C suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs). Coils2 Program predcit presence of Coiled Coil. No Signal Peptide or TMH present.	gene	gene2711	http://www.ncbi.nlm.nih.gov/gene/?term=azo2662
azo2663	azo2663		azo2663	2938853	2939512	-	conserved hypothetical peroxiredoxin	Conserve peroxiredoxin. Homology to mll2432 of M. loti of 74%25 (trembl|Q98IF0). Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic fatty acid and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury. Pfam: AhpC/TSA family no TMHs. No signal peptide.%3B~Family membership	gene	gene2712	http://www.ncbi.nlm.nih.gov/gene/?term=azo2663
azo2664	azo2664		azo2664	2939583	2939930	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to TdenA01001041 of Thiobacillus denitrificans of 39%25 (gi|52007163|ref|ZP_00334541.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs	gene	gene2713	http://www.ncbi.nlm.nih.gov/gene/?term=azo2664
azo2665	azo2665		azo2665	2939940	2940662	-	hypothetical secreted protein	Hypothetical secreted protein. No homology of the entire protein to the data bank. no domains predicted signal peptide no TMHs	gene	gene2714	http://www.ncbi.nlm.nih.gov/gene/?term=azo2665
azo2666	azo2666		azo2666	2940920	2941666	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.	gene	gene2715	http://www.ncbi.nlm.nih.gov/gene/?term=azo2666
azo2667	azo2667	nolR	nolR	2941903	2942196	+	putative transcriptional repressor	Putative transcriptional repressor%2C%3B~High confidence in function and specificity	gene	gene2716	http://www.ncbi.nlm.nih.gov/gene/?term=azo2667
azo2668	azo2668	nerA	nerA	2942246	2943358	+	probable glycerol trinitrate reductase	Probable glycerol trinitrate reductase. Homology to nerA of A. radiobacter of 66%25 (trembl|O31246) InterPro: NADH:flavin oxidoreductase/NADH oxidase (IPR001155) Pfam: NADH:flavin oxidoreductase/NADH oxidase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2717	http://www.ncbi.nlm.nih.gov/gene/?term=azo2668
azo2669	azo2669		azo2669	2943448	2944503	-	conserved hypothetical cytochrome c family protein	Conserved hypothetical cytochrome c family protein. Homology to bra0353 of B. suis of 50%25 (trembl|Q8FWU2). InterPro: Cytochrome c class I (IPR003088). Pfam: cytochrome c. signal peptide. no TMHS%3B~Function unclear	gene	gene2718	http://www.ncbi.nlm.nih.gov/gene/?term=azo2669
azo2670	azo2670		azo2670	2944870	2945280	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to gsu0710 of G. sulfurreducens of 66%25 (tremblnew|AAR34040). no doamins predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2719	http://www.ncbi.nlm.nih.gov/gene/?term=azo2670
azo2671	azo2671	fixJ1	fixJ1	2945296	2945943	-	two-component response regulator	Transcriptional regulatory protein%2C%3B~Specificity unclear	gene	gene2720	http://www.ncbi.nlm.nih.gov/gene/?term=azo2671
azo2672	azo2672		azo2672	2945927	2947732	-	conserved hypothetical sensor histidine kinase	Conserved hypothetical sensor histidine kinase%2CMODULATES THE ACTIVITY OF FIXJ A TRANSCRIPTIONAL ACTIVATOR OF NITROGEN FIXATION FIXK GENE. FIXL PROBABLY ACTS AS A KINASE THAT PHOSPHORYLATES FIXJ.%3B~Specificity unclear	gene	gene2721	http://www.ncbi.nlm.nih.gov/gene/?term=azo2672
azo2673	azo2673		azo2673	2947962	2948441	+	conserved hypothetical protein	Hypothetical protein%2C69%25 Identity (75%25 similarity) to TrEMBl%3BQ8XS84 Has PF06983%2C 3-demethylubiquinone-9 3-methyltransferase%3BIPR009725 3-dmu-93-mtfrase%3BThis family represents a conserved region approximately 100 residues long within a number of bacterial and archaeal 3-demethylubiquinone-9 3-methyltransferases (EC:2.1.1.64). Note that some family members contain more than one copy of this region%2C and that many members are hypothetical proteins.%3B~Function unclear	gene	gene2722	http://www.ncbi.nlm.nih.gov/gene/?term=azo2673
azo2674	azo2674		azo2674	2949219	2950808	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to Bcep02002160 of Burkholderia fungorum of 35%25 (gi|48787369|ref|ZP_00283451.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 6 TMHs%3B~Conserved hypothetical protein	gene	gene2723	http://www.ncbi.nlm.nih.gov/gene/?term=azo2674
azo2675	azo2675		azo2675	2950840	2951982	-	aminotransferase	Lipopolysaccharide biosynthesis protein rffA. InterPro: DegT/DnrJ/EryC1/StrS family%3B~Specificity unclear	gene	gene2724	http://www.ncbi.nlm.nih.gov/gene/?term=azo2675
azo2676	azo2676		azo2676	2952049	2952921	-	putative methyltransferase	Similar to TREMBL:Q82SX7 (48%25 identity%2C 66%25 similarity%2C generic methyl transferase). Pfam (PF01209): ubiE/COQ5 methyltransferase family. TIGRFAM (TIGR00091): conserved hypothetical protein. TMHMM reporting one transmembrane helix.%3B~Function unclear	gene	gene2725	http://www.ncbi.nlm.nih.gov/gene/?term=azo2676
azo2677	azo2677		azo2677	2952918	2953337	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE2170 of Nitrosomonas europaea of 44%25 (trembl|Q82SX6(SRS)). Pfam: GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene2726	http://www.ncbi.nlm.nih.gov/gene/?term=azo2677
azo2678	azo2678		azo2678	2953334	2954254	-	conserved hypothetical protein		gene	gene2727	http://www.ncbi.nlm.nih.gov/gene/?term=azo2678
azo2679	azo2679		azo2679	2954285	2954947	-	conserved hypothetical protein%2C possibly an acyltransferase	InterPro: Bacterial transferase hexapeptide repeat%3B~Function unclear	gene	gene2728	http://www.ncbi.nlm.nih.gov/gene/?term=azo2679
azo2680	azo2680		azo2680	2954944	2955885	-	glycosyltransferase	Bactoprenol glucosyl transferase (EC 2.4.1.-). Involved in O antigen modification. Catalyzes the transfer of the glucose residue from UDP-glucose to a lipid carrier (By similarity).%3B~Specificity unclear	gene	gene2729	http://www.ncbi.nlm.nih.gov/gene/?term=azo2680
azo2681	azo2681		azo2681	2955882	2956574	-	conserved hypothetical protein	High confidence in function and specificity	gene	gene2730	http://www.ncbi.nlm.nih.gov/gene/?term=azo2681
azo2682	azo2682		azo2682	2957374	2957898	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs	gene	gene2731	http://www.ncbi.nlm.nih.gov/gene/?term=azo2682
azo2683	azo2683		azo2683	2957907	2958251	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs	gene	gene2732	http://www.ncbi.nlm.nih.gov/gene/?term=azo2683
azo2684	azo2684		azo2684	2958597	2959409	-	putative integrase	putative prophage integrase%3B~Family membership	gene	gene2733	http://www.ncbi.nlm.nih.gov/gene/?term=azo2684
azo2685	azo2685		azo2685	2960329	2962404	+	GGDEF/EAL/PAS-domain containing protein	GGDEF/EAL/PAS-domain containing protein	gene	gene2735	http://www.ncbi.nlm.nih.gov/gene/?term=azo2685
azo2687	azo2687		azo2687	2962857	2963009	+	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide present. TMH in signal peptide.	gene	gene2737	http://www.ncbi.nlm.nih.gov/gene/?term=azo2687
azo2688	azo2688	creA	creA	2963024	2963503	-	putative periplasmic protein [creA]	Putative periplasmic protein [creA]%2C59%25 identity (77%25 similarity) to SwissProt%3BP08367. TrEMBL%3B Q8XZD0(59%25 identity). Has PF05981%2C CreA protein%3BIPR010292%2C CreA: This family consists of several bacterial CreA proteins%2C the function of which is unknown.%3B~High confidence in function and specificity	gene	gene2738	http://www.ncbi.nlm.nih.gov/gene/?term=azo2688
azo2689	azo2689		azo2689	2963500	2963913	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03001159 of Dechloromonas aromatica of 50%25 (gi|41726181|ref|ZP_00152939.1|(NBCI ENTREZ)). Pfam: ProQ activator of osmoprotectant transpoter ProP. This family includes ProQ%2C which is required for full activation of the osmoprotectant transporter%2C ProQ%2C in Escherichia coli. no signal. peptide no TMHs	gene	gene2739	http://www.ncbi.nlm.nih.gov/gene/?term=azo2689
azo2690	azo2690		azo2690	2964056	2965018	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA7139 of Azoarcus sp. EbN1 of 64%25 (gnl|keqq|eba:ebA7139(KEGG)). No domains predicted. No signal peptide. No TMH present.	gene	gene2740	http://www.ncbi.nlm.nih.gov/gene/?term=azo2690
azo2691	azo2691		azo2691	2965210	2967042	+	GGDEF family protein	GGDEF family protein%2C%3B~Conserved hypothetical protein	gene	gene2741	http://www.ncbi.nlm.nih.gov/gene/?term=azo2691
azo2692	azo2692		azo2692	2967068	2968882	+	GGDEF family protein	GGDEF family protein	gene	gene2742	http://www.ncbi.nlm.nih.gov/gene/?term=azo2692
azo2693	azo2693	fliC2	fliC2	2969110	2970591	+	flagellin	Flagellin. Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. InterPro: Flagellin N-terminus%2C Flagellin C-terminus Pfam: Bacterial flagellin N-terminus%2C bacterial flagellin C-terminus no signal peptide no TMH%3B~High confidence in function and specificity	gene	gene2743	http://www.ncbi.nlm.nih.gov/gene/?term=azo2693
azo2694	azo2694		azo2694	2970739	2971869	+	nucleotide sugar aminotransferase	InterPro: DegT/DnrJ/EryC1/StrS family%3B~Specificity unclear	gene	gene2744	http://www.ncbi.nlm.nih.gov/gene/?term=azo2694
azo2695	azo2695		azo2695	2971926	2973140	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to BF2580 of Bacteroides fragilis of 47%25 (gnl|keqq|bfr:BF2580(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene2745	http://www.ncbi.nlm.nih.gov/gene/?term=azo2695
azo2696	azo2696		azo2696	2973203	2974009	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Mmc102000919 of Magnetococcus sp. MC-1 of 48%25 (gi|48833619|ref|ZP_00290637.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene2746	http://www.ncbi.nlm.nih.gov/gene/?term=azo2696
azo2697	azo2697		azo2697	2974127	2975602	+	hypothetical protein	Hypothetical protein. No homology of the entire protein with the data base. InterPro: Glycosyl transferase family 2. Diverse family%2C transferring sugar from UDP-glucose%2C UDP-N-acetyl- galactosamine%2C GDP-mannose or CDP-abequose%2C to a range of substrates including cellulose%2Cdolichol phosphate and teichoic acids. No signal peptide. No TMHs	gene	gene2747	http://www.ncbi.nlm.nih.gov/gene/?term=azo2697
azo2698	azo2698	pepM	pepM	2975648	2976952	+	putative phosphoenolpyruvate phosphomutase	Phosphoenolpyruvate phosphomutase precursor(Phosphoenolpyruvate mutase) (PEP mutase) (PEP phosphomutase).FORMATION OF A CARBON-PHOSPHORUS BOND BY CONVERTING PHOSPHOENOLPYRUVATE (PEP) TO PHOSPHONOPYRUVATE (P-PYR). 34%25 Isocit_lyase_ph.%3B~High confidence in function and specificity	gene	gene2748	http://www.ncbi.nlm.nih.gov/gene/?term=azo2698
azo2699	azo2699		azo2699	2976949	2978073	+	phosphonopyruvate decarboxylase%2C putative	3-phosphonopyruvate decarboxylase (EC 4.1.1.-). InterPro: Thiamine pyrophosphate dependent enzyme acolac_lg: acetolactate synthase large subunit%2Cbiosynthetic type%3B~Family membership	gene	gene2749	http://www.ncbi.nlm.nih.gov/gene/?term=azo2699
azo2700	azo2700		azo2700	2978078	2979187	+	conserved hypothetical alcohol dehydrogenase	Conserved hypothetical alcohol dehydrogenase. Homology to bp2820 of B. pertussis of 29%25 (TREMBL:Q7VV69). InterPro: Iron-containing alcohol dehydrogenase (IPR001670). Pfam: Iron-containing alcohol dehydrogenase. no signal peptide. no TMHs.%3B~Family membership	gene	gene2750	http://www.ncbi.nlm.nih.gov/gene/?term=azo2700
azo2701	azo2701		azo2701	2979203	2980453	+	hypothetical protein%2C similar to teichoic acid biosynthesis protein B	Putative CDP-glycerol:glycerophosphate glycerophosphotransferase tarF (EC 2.7.8.-). Catalyzes the addition of a second single glycerol-P residue to the prenolpyrophosphate-linked dissacharide to complete the linkage unit (Potential). PurN: phosphoribosylglycinamide formy%3B~Family membership	gene	gene2751	http://www.ncbi.nlm.nih.gov/gene/?term=azo2701
azo2702	azo2702		azo2702	2980491	2984042	+	glycosyltransferase	InterPro: Glycosyl transferase family 2%3B~Family membership	gene	gene2752	http://www.ncbi.nlm.nih.gov/gene/?term=azo2702
azo2703	azo2703		azo2703	2984043	2986367	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to magn028431 of M. magnetotacticum of 33%25 (ZP 00053827). Domain structur: 76 aa - 144 aa TPR%3B 201 aa - 316 aa TPR%3B 408 aa - 761 aa COG3914. InterPro: TPR repeat (IPR001440). no signal peptide no TMH.	gene	gene2753	http://www.ncbi.nlm.nih.gov/gene/?term=azo2703
azo2704	azo2704	fliC3	fliC3	2986580	2988061	+	flagellin	Flagellin. Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. InterPro: Flagellin N-terminus%2C Flagellin C-terminus Pfam: Bacterial flagellin N-terminus%2C bacterial flagellin C-terminus no TMH no signal peptide%3B~High confidence in function and specificity	gene	gene2754	http://www.ncbi.nlm.nih.gov/gene/?term=azo2704
azo2705	azo2705	flaG	flaG	2988140	2988544	+	probable flagellar protein	Protein flaG. Although these proteins are known to be important for flagellar their exact function is unknown TREMBL:Q82UA2: 56%25 identity%2C 79%25 similarity. InterPro:IPR005186%3B FlaG. Pfam:PF03646%3B FlaG L12: ribosomal protein L7/L12 Nonsecretory protein with low signal peptide probability (0.041): SignalP predicted Transmembrane helices 0%3B~High confidence in function and specificity	gene	gene2755	http://www.ncbi.nlm.nih.gov/gene/?term=azo2705
azo2706	azo2706	fliD	fliD	2988571	2989992	+	flagellar hook-associated protein	Flagellar hook-associated protein 2 (HAP2) (Filament cap protein) (Flagellar cap protein). The flagellar hook-associated protein 2 (AHP2 or FilD) is a capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria. InterPro: Flagellar hook-associated protein 2 no signal-peptide no TMHs%3B~High confidence in function and specificity	gene	gene2756	http://www.ncbi.nlm.nih.gov/gene/?term=azo2706
azo2707	azo2707	fliS	fliS	2990004	2990414	+	flagellar protein FliS	Flagellar protein fliS. The function of this protein in flagellar biosynthesis is unknown%2C but appears to be regulatory. Might be a chaperon for Flic. InterPro: Flagellar protein FliS fliS: flagellar protein FliS Pfam: Flagellar protein FliS no signal peptide no TMHs%3B~Family membership	gene	gene2757	http://www.ncbi.nlm.nih.gov/gene/?term=azo2707
azo2708	azo2708	fliT	fliT	2990427	2990744	+	hypothetical flagellar related protein FliT	Hypothetical lagellar related protein FliT. Homology to fliT of R. solanacearum of 27%25 (trembl|Q8XST2). no domains predicted. no signal peptide. no TMHs.	gene	gene2758	http://www.ncbi.nlm.nih.gov/gene/?term=azo2708
azo2709	azo2709		azo2709	2990776	2991891	+	hypothetical protein	Hypothetical protein%2C42%25 similarity with TrEMBL%3BQ82T52. No Signal Peptide or TMH reported present.%3B~Family membership	gene	gene2759	http://www.ncbi.nlm.nih.gov/gene/?term=azo2709
azo2710	azo2710		azo2710	2991881	2992258	+	conserved hypothetical flagellar related protein	Conserved hypothetical flagellar related protein. Homology to NE2078 of Nitrosomonas europaea of 48%25 (CAD85989). Tirgfam: flhB_rel(TIGR). This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs%2C the members of this family form a monophyletic set. No TMHs. No signal peptide.%3B~Conserved hypothetical protein	gene	gene2760	http://www.ncbi.nlm.nih.gov/gene/?term=azo2710
azo2711	azo2711		azo2711	2992357	2993136	+	conserved hypothetical protein	Conserved hypothetical protein%2C55%25 similarity to TrEMBL%3BQ82T50. Has IPR009926%3BPF07317:YcgR protein%3BThis family consists of several hypothetical YcgR proteins. YcgR may be involved in the flagellar motor function and may be a new member of the flagellar regulon. No signal peptide or TMH reported present.%3B~Function unclear	gene	gene2761	http://www.ncbi.nlm.nih.gov/gene/?term=azo2711
azo2712	azo2712		azo2712	2993380	2997147	+	GGDEF/PAS/PAC-domain containing protein	GGDEF/PAS/PAC-domain containing protein%2C%3B~Conserved hypothetical protein	gene	gene2762	http://www.ncbi.nlm.nih.gov/gene/?term=azo2712
azo2713	azo2713		azo2713	2997226	2997522	-	flagellar hook-basal body complex protein FliE	Region start changed from 2997519 to 2997495 (-24 bases)	gene	gene2763	http://www.ncbi.nlm.nih.gov/gene/?term=azo2713
azo2714	azo2714	fleR	fleR	2997698	2999176	-	sigma-54 dependent response regulator	Sigma-54 dependent response regulator%2C%3B~High confidence in function and specificity	gene	gene2764	http://www.ncbi.nlm.nih.gov/gene/?term=azo2714
azo2715	azo2715	fleS	fleS	2999173	3000354	-	putative sensory box sensor histidine kinase	Putative sensory box sensor histidine kinase%2C%3B~High confidence in function and specificity	gene	gene2765	http://www.ncbi.nlm.nih.gov/gene/?term=azo2715
azo2716	azo2716	fliF	fliF	3000514	3002202	+	flagellar M-ring protein	Flagellar M-ring protein. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L%2CP%2CS%2C and M) mounted on a central rod. The M ring is integral to the inner membrane of the cell and may be connected to the flagellar rod via the S ring. It MAY BE ACTIVELY INVOLVED IN ENERGY TRANSDUCTION. The S (supramembrane ring) lies just distal to the M ring. The L and P rings lie in the outer membrane and the periplasmic space%2C respectively. InterPro: Secretory protein of YscJ/FliF family fliF: flagellar M-ring protein FliF Pfam: Secretory protein of YscJ/FliF family no signal peptide probable 2 TMHs (other FilF have no predictions of TMHs)%3B~High confidence in function and specificity	gene	gene2766	http://www.ncbi.nlm.nih.gov/gene/?term=azo2716
azo2717	azo2717	fliG	fliG	3002199	3003197	+	flagellar motor switch protein FliG	Flagellar motor switch protein fliG. FLIG IS ONE OF THREE PROTEINS (FLIG FLIN FLIM) THAT FORM A SWITCH COMPLEX THAT IS PROPOSED TO BE LOCATED AT THE BASE OF THE BASAL BODY. THIS COMPLEX INTERACTS WITH THE CHEY AND CHEZ CHEMOTAXIS PROTEINS IN ADDITION TO CONTACTING COMPONENTS OF THE MOTOR THAT DETERMINE THE DIRECTION OF FLAGELLAR ROTATION (BY SIMILARITY). fliG: flagellar motor switch protein Pfam: fliG C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2767	http://www.ncbi.nlm.nih.gov/gene/?term=azo2717
azo2718	azo2718	fliH	fliH	3003231	3003977	+	flagellar assembly protein FliH	Probable Flagellar assembly protein FliH%2C 38%25 identity to TrEMBL%3BQ7VYE7%2C Q7WJB3%2C Q8XSS5. Has PF02108%2CFlagellar assembly protein FliH%3BIPR000563%2C Flag_FliH%3B Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process%2C by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that%2C while most mutants were able to regrow filaments%2C flhA%2C fliH%2C fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25%2C782 Da.	gene	gene2768	http://www.ncbi.nlm.nih.gov/gene/?term=azo2718
azo2719	azo2719	fliI	fliI	3003991	3005397	+	ATP synthase	ATP synthase (EC 3.6.3.14). Probable catalytic subunit of a protein translocase for flagellum-specific export or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. InterPro: ATP synthase alpha and beta subunit central region Pfam: ATP synthase alpha/beta family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2769	http://www.ncbi.nlm.nih.gov/gene/?term=azo2719
azo2720	azo2720	fliJ	fliJ	3005493	3005945	+	putative flagellar protein FliJ	Flagellar fliJ protein. FLAGELLAR PROTEIN THAT AFFECTS CHEMOTACTIC EVENTS. Might have a chaperon-like activity InterPro: Flagellar FliJ protein no signal peptide no TMHs%3B~Family membership	gene	gene2770	http://www.ncbi.nlm.nih.gov/gene/?term=azo2720
azo2721	azo2721	fliK	fliK	3006109	3007209	+	putative flagellar hook-length control protein FliK	Flagellar hook-length control protein. Controls the length of the flagellar hook. no TMHs no signal peptide%3B~Family membership	gene	gene2771	http://www.ncbi.nlm.nih.gov/gene/?term=azo2721
azo2722	azo2722	fliL	fliL	3007300	3007881	+	putative flagellar basal body-associated protein FliL	putative flagellar basal body-associated protein FliL Controls the rotational direction of flagella during chemotaxis. no signal peptide no TMHs%3B~Family membership	gene	gene2772	http://www.ncbi.nlm.nih.gov/gene/?term=azo2722
azo2723	azo2723	fliM	fliM	3007896	3008906	+	flagellar motor switch protein FliM	Flagellar motor switch protein fliM. FLIM IS ONE OF THREE PROTEINS (FLIG FLIN FLIM) THAT FORM A SWITCH COMPLEX THAT IS PROPOSED TO BE LOCATED AT THE BASE OF THE BASAL BODY. THIS COMPLEX INTERACTS WITH THE CHEY AND CHEZ CHEMOTAXIS PROTEINS IN ADDITION TO CONTACTING COMPONENTS OF THE MOTOR THAT DETERMINE THE DIRECTION OF FLAGELLAR ROTATION. InterPro: Flagellar motor switch protein FliM Pfam:Flagellar motor switch protein FliM no TMHs signale peptide: no analysis%3B~High confidence in function and specificity	gene	gene2773	http://www.ncbi.nlm.nih.gov/gene/?term=azo2723
azo2724	azo2724	fliN	fliN	3008899	3009378	+	flagellar motor switch FliN	Flagellar motor switch protein fliN (Flagellar motor switch protein mopA) (Fragment). FliN is one of three proteins (FliG FliN FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins in addition to contacting components of the motor that determine the dirction of flagellar rotation (by similarity). InterPro: Surface presentation of antigens (SPOA) protein%2C Flagellar motor switch FliN protein Pfam: Surface presentation of antigens (SPOA) protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2774	http://www.ncbi.nlm.nih.gov/gene/?term=azo2724
azo2725	azo2725	fliO	fliO	3009540	3009863	+	flagellar biosynthesis protein%2C FliO	Flagellar biosynthesis protein%2CFliO%2C 26%25 identity to TrEMBL%3BQ8XBA2%2C Q83ML3. SProt%3BP22586 Has Signal peptide. Has PF04347%2C Flagellar biosynthesis protein%2CFliO%3BIPR007442 %3B FliO is an essential component of the flagellum-specific protein export apparatus. It is an integral membrane protein. Its precise molecular function is unknown.	gene	gene2775	http://www.ncbi.nlm.nih.gov/gene/?term=azo2725
azo2726	azo2726	fliP	fliP	3009853	3010629	+	flagellar biosynthetic protein FliP	Flagellar biosynthetic protein fliP. Plays a role in the flagellum-specific transport system (By similarity). InterPro: Flagella transport protein FliP family araaP: aromatic amino acid transport pr%3B~High confidence in function and specificity	gene	gene2776	http://www.ncbi.nlm.nih.gov/gene/?term=azo2726
azo2727	azo2727	fliQ	fliQ	3010643	3010912	+	flagellar biosynthesis protein FliQ	Flagellar biosynthesis protein fliQ. The fliQ gene product%2C a small integral membrane protein that contains two putative transmembrane (TM) regions%2C is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis. Role in flagellar biosynthesis (By similarity). Pfam: Bacterial export proteins%2C family 3 no signal peptide most probable 2 TMHs%3B~Function unclear	gene	gene2777	http://www.ncbi.nlm.nih.gov/gene/?term=azo2727
azo2728	azo2728	fliR	fliR	3010935	3011747	+	flagellar biosynthesis protein FliR	Flagellar biosynthesis protein fliR. Role in flagellar biosynthesis. InterPro: Bacterial export protein family 1 PFam: Bacterial export proteins%2C family 1 no signal peptide most probable 8 TMHs%3B~High confidence in function and specificity	gene	gene2778	http://www.ncbi.nlm.nih.gov/gene/?term=azo2728
azo2729	azo2729		azo2729	3011751	3012236	-	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted signal peptide no TMHs	gene	gene2779	http://www.ncbi.nlm.nih.gov/gene/?term=azo2729
azo2730	azo2730	flgL	flgL	3012247	3013509	-	flagellar hook-filament junction protein 3	Flagellar hook-associated protein 3 (HAP3) (Hook-filament junction protein). no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2780	http://www.ncbi.nlm.nih.gov/gene/?term=azo2730
azo2731	azo2731	flgK	flgK	3013521	3015512	-	flagellar hook-filament junction protein 1	flagellar hook-filament junction protein 1 (HAP1). no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2781	http://www.ncbi.nlm.nih.gov/gene/?term=azo2731
azo2732	azo2732	flgJ	flgJ	3015668	3016735	-	peptidoglycan hydrolase	Peptidoglycan hydrolase flgJ (EC 3.2.1.-) (Muramidase flgJ). Flagellum-specific muramidase which hydrolyses the peptidoglycan layer to assemble the rod structure in the periplasmic space (by similarity). InterPro: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidases Pfam: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidases no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2782	http://www.ncbi.nlm.nih.gov/gene/?term=azo2732
azo2733	azo2733	flgI	flgI	3016818	3017930	-	flagellar P-ring protein precursor	Flagellar P-ring protein precursor (Basal body P-ring protein). FlgH and FlgI%2C which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space%2C have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure%2C in keeping with other outer membrane proteins%2C and FlgI is thought to have even more beta-structure content [1]. InterPro: Flagellar P-ring protein Pfam: Flagellar P-ring protein signal peptide probable 1 TMH%3B~High confidence in function and specificity	gene	gene2783	http://www.ncbi.nlm.nih.gov/gene/?term=azo2733
azo2734	azo2734	flgH	flgH	3017950	3018627	-	flagellar L-ring protein precursor	Flagellar L-ring protein precursor (Basal body L-ring protein). Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. The L ring reside in the outer membrane. FlgH%2C which is exported across the cell membrane to their destinations in the outer membrane%2C has a typical N-terminal cleaved signal-peptide sequences and is predicted to have an extensive -sheet structure%2C in keeping with other outer membrane proteins. Pfam: Flagellar L-ring protein signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2784	http://www.ncbi.nlm.nih.gov/gene/?term=azo2734
azo2735	azo2735	flgG	flgG	3018650	3019432	-	flagellar basal-body rod protein FlgG	Flagellar basal-body rod protein flgG (Distal rod protein). The rod has been shown to consist of four different%2C yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB%2C flgC%2C and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2785	http://www.ncbi.nlm.nih.gov/gene/?term=azo2735
azo2736	azo2736	flgF	flgF	3019571	3020308	-	flagellar basal-body rod protein FlgF	Flagellar basal-body rod protein flgF (Putative proximal rod protein). The rod has been shown to consist of four different%2C yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB%2C flgC%2C and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2786	http://www.ncbi.nlm.nih.gov/gene/?term=azo2736
azo2737	azo2737	flgE	flgE	3020334	3021671	-	FlgE protein	Flagellar hook protein flgE. InterPro: Flagella basal body rod protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2787	http://www.ncbi.nlm.nih.gov/gene/?term=azo2737
azo2738	azo2738	flgD	flgD	3021687	3022361	-	probable basal-body rod modification protein FlgD	Basal-body rod modification protein flgD. FlgD is known to be absolutely required for hook assembly%2C yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. no signal peptide no TMHs%3B~Family membership	gene	gene2788	http://www.ncbi.nlm.nih.gov/gene/?term=azo2738
azo2739	azo2739	flgC	flgC	3022403	3022843	-	flagellar basal-body rod protein FlgC	Flagellar basal-body rod protein flgC. The rod has been shown to consist of four different%2C yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB%2C flgC%2C and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2789	http://www.ncbi.nlm.nih.gov/gene/?term=azo2739
azo2740	azo2740	flgB	flgB	3022865	3023266	-	flagellar basal-body rod protein FlgB	Flagellar basal-body rod protein flgB (Putative proximal rod protein). The rod has been shown to consist of four different%2C yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB%2C flgC%2C and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2790	http://www.ncbi.nlm.nih.gov/gene/?term=azo2740
azo2741	azo2741	flgA	flgA	3023519	3024289	+	chaperon for flagellar basal body P-ring formation	Flagella basal body P-ring formation protein flgA precursor. Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a chaperon protein for the P-ring assembly (by similarity). signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2791	http://www.ncbi.nlm.nih.gov/gene/?term=azo2741
azo2742	azo2742		azo2742	3024385	3024681	+	putative negative regulator of flagellin synthesis FlgM	Region start changed from 3024385 to 3024358 (27 bases)	gene	gene2792	http://www.ncbi.nlm.nih.gov/gene/?term=azo2742
azo2743	azo2743	flgN	flgN	3024695	3025174	+	putative chaperon of flagellar synthesis	Putative chaperon of flagella synthesis. FlgN is an export chaperon of FlgM and FlgK involved in flagellar synthesis. no signal peptide no TMHs%3B~Family membership	gene	gene2793	http://www.ncbi.nlm.nih.gov/gene/?term=azo2743
azo2744	azo2744		azo2744	3025253	3025792	-	hypothetical secreted protein	Hypothetical secreted protein. Homology to cv0285 of C. violaceum of 25%25 (trembl|Q7P1C8) no domains predicted signal peptide TMH in signal peptide	gene	gene2794	http://www.ncbi.nlm.nih.gov/gene/?term=azo2744
azo2745	azo2745	ompR2	ompR2	3025977	3026735	+	probable DNA-binding response regulator	Probable DNA-binding response regulator%2C ITS CARBOXYL-TERMINAL MOIETY MEDIATES THE MULTIMERIZATION OF THE OMPR PROTEIN. AS A MULTIMER IT TURNS ON THE EXPRESSION OF THE OMPC GENE%3B AS A MONOMER IT TURNS ON THE EXPRESSION OF THE OMPF GENE.%3B~High confidence in function and specificity	gene	gene2795	http://www.ncbi.nlm.nih.gov/gene/?term=azo2745
azo2746	azo2746	envZ2	envZ2	3026732	3028066	+	putative sensor histidine kinase	Putative sensor histidine kinase%2C%3B~High confidence in function and specificity	gene	gene2796	http://www.ncbi.nlm.nih.gov/gene/?term=azo2746
azo2747	azo2747		azo2747	3028173	3028706	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA6852 of Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA6852(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene2797	http://www.ncbi.nlm.nih.gov/gene/?term=azo2747
azo2748	azo2748		azo2748	3029233	3031296	+	putative sensory box histidine kinase	Putative sensory box histidine kinase%2C very low similarity to TREMBL: trembl|Q9FD00 (12%25 Erwinia stewartii%2C HrpX) InterPro: IPR005467 His_kinase. IPR003661 His_kinA_N. IPR000014 PAS_domain. IPR001610 PAC Pfam: PF02518 HATPase_c. PF00989 PAS. PF00785 PAC. TIGRFAM:TIGR00229 PAS domain S-box.%3B~Function unclear	gene	gene2798	http://www.ncbi.nlm.nih.gov/gene/?term=azo2748
azo2749	azo2749	vsrD2	vsrD2	3031290	3031919	+	probable transcriptional regulator%2C LuxR family	Probable transcriptional regulator%2C LuxR family%2C%3B~Specificity unclear	gene	gene2799	http://www.ncbi.nlm.nih.gov/gene/?term=azo2749
azo2750	azo2750	glpA	glpA	3031885	3033474	-	putative glycerol-3-phosphate dehydrogenase	Putative glycerol-3-phosphate dehydrogenase. Homology to glpA of B. hermsir of 38%25 (trembl|Q84I21) FAD-dependent glycerol-3-phosphate dehydrogenase catalyzes the conversion of glycerol-3-phosphate into dihydroxyacetone phosphate: sn-glycerol-3-phosphate + acceptor %3D glycerone phosphate + reduced acceptor. InterPro: D-amino acid oxidase (IPR000927) Pfam: FAD dependent oxidoreductase no signal peptide no TMHs gidA: glucose-inhibited division prot%3B~Family membership	gene	gene2800	http://www.ncbi.nlm.nih.gov/gene/?term=azo2750
azo2751	azo2751	glpK	glpK	3033471	3034961	-	probable glycerol kinase	Probable glycerol kinase. Homology to glpK of T. aquaticus of 53%25 (sprot|GLPK_THEAQ). Key enzyme in the regulation of glycerol uptake and metabolism. InterPro: Carbohydrate kinase FGGY family (IPR000577) Pfam: FGGY family of carobhydrates kinases%2C N-terminus%3B FGGY family of carobhydrates kinases%2C C-terminus no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2801	http://www.ncbi.nlm.nih.gov/gene/?term=azo2751
azo2752	azo2752		azo2752	3035084	3035953	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology with CV1535 of C. violaceum of 46%25. 2A78: Carboxylate/Amino Acid/Amine Tranporter. Pfam: Intergral membrane protein DUF6. probable 9 TMHs. signal peptide%3B~Conserved hypothetical protein	gene	gene2802	http://www.ncbi.nlm.nih.gov/gene/?term=azo2752
azo2753	azo2753		azo2753	3036044	3036406	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to NE1501 of N.europaea of 47%25 (trembl:Q82UI4). No domains predicted. Signal peptide present. No TMH reported present.	gene	gene2803	http://www.ncbi.nlm.nih.gov/gene/?term=azo2753
azo2754	azo2754	sseA	sseA	3036403	3037257	+	putative thiosulfate sulfurtransferase	SseA: putative thiosulfate sulfurtransferase (rhodanese-like protein) [EC:2.8.1.1]. This protein transfers a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity (130-fold lower). Its participation in detoxification of cyanide may be small. May be involved in the enhancement of serine sensitivity. Probable 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2) (Rhodanese- like protein) (MST). InterPro: Rhodanese/cdc25 fold%3B~High confidence in function and specificity	gene	gene2804	http://www.ncbi.nlm.nih.gov/gene/?term=azo2754
azo2755	azo2755	murI	murI	3037292	3038107	-	glutamate racemase	Glutamate racemase (EC 5.1.1.3). Provides the (R)-glutamate required for cell wall biosynthesis (By similarity). InterPro: Glutamate racemase glut_race: glutamate racemase%3B~High confidence in function and specificity	gene	gene2805	http://www.ncbi.nlm.nih.gov/gene/?term=azo2755
azo2756	azo2756		azo2756	3038104	3039303	-	TyrS protein	Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS). tyrS: tyrosyl-tRNA synthetase%3B~High confidence in function and specificity	gene	gene2806	http://www.ncbi.nlm.nih.gov/gene/?term=azo2756
azo2757	azo2757		azo2757	3039381	3040709	+	metalloprotease precursor	Hypothetical metalloprotease yebA precursor (EC 3.4.24.-).%3B~Specificity unclear	gene	gene2807	http://www.ncbi.nlm.nih.gov/gene/?term=azo2757
azo2758	azo2758		azo2758	3040778	3041128	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebB30 of Azoarcus sp. EbN1 of 88%25 (gnl|keqq|eba:ebB30(KEGG)). Has IPR000361%2C HesB_yadR_yfhF: HesB-like domain%2CPF01521%3B This family includes HesB which may be involved in nitrogen fixation%3B the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which YHGI_ECOLI and Swiss:NP31774 also contains NifU-like domains NifU which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli%2C the hesB-like gene iscN is required for nitrogen fixation. No signal peptide. No TMHs	gene	gene2808	http://www.ncbi.nlm.nih.gov/gene/?term=azo2758
azo2759	azo2759	rpsI	rpsI	3041369	3041761	-	30S ribosomal protein S9	30S ribosomal protein S9.%3B~High confidence in function and specificity	gene	gene2809	http://www.ncbi.nlm.nih.gov/gene/?term=azo2759
azo2760	azo2760	rplM	rplM	3041775	3042203	-	50S ribosomal protein L13	50S ribosomal protein L13. THIS PROTEIN IS ONE OF THE EARLY ASSEMBLY PROTEINS OF THE 50S RIBOSOMAL SUBUNIT.%3B~High confidence in function and specificity	gene	gene2810	http://www.ncbi.nlm.nih.gov/gene/?term=azo2760
azo2761	azo2761		azo2761	3042732	3043124	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc0489 of R. solanacearum of 73%25 (trembl|Q8Y247). no signal peptide. no TMH. No domains predicted.%3B~Family membership	gene	gene2811	http://www.ncbi.nlm.nih.gov/gene/?term=azo2761
azo2762	azo2762		azo2762	3043258	3043878	-	ubiquinone biosynthesis protein	Probable Ubiquinone biosynthesis protein COQ7 homolog (Coenzyme Q biosynthesis protein 7 homolog) (Timing protein clk-1 homolog) (Fragment).%3B~Function unclear	gene	gene2812	http://www.ncbi.nlm.nih.gov/gene/?term=azo2762
azo2763	azo2763		azo2763	3043881	3044411	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA945 of Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA945(KEGG)). No domains predicted. Signal P reporting signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene2813	http://www.ncbi.nlm.nih.gov/gene/?term=azo2763
azo2764	azo2764		azo2764	3044471	3044998	-	probable (di)nucleoside polyphosphate hydrolase	Region start changed from 3044821 to 3044998 (177 bases)	gene	gene2814	http://www.ncbi.nlm.nih.gov/gene/?term=azo2764
azo2765	azo2765		azo2765	3045152	3046897	+	CAL95381.1	Region start changed from 3044465 to 3045125 (-660 bases)	gene	gene2815	http://www.ncbi.nlm.nih.gov/gene/?term=azo2765
azo2766	azo2766		azo2766	3046921	3047592	+	soluble lytic murein transglycosylase precursor	Probable Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) (Murein hydrolase C).%3B~Function unclear	gene	gene2816	http://www.ncbi.nlm.nih.gov/gene/?term=azo2766
azo2767	azo2767		azo2767	3047582	3048178	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03000304 of Dechloromonas aromatica of 54%25 (gi|46140561|ref|ZP_00152132.2|(NBCI ENTREZ)). Has PF04519%3B Protein of unknown function%2C DUF583:This family contains several uncharacterised hypothetical proteins. No Signal peptide or TMH reported as present.	gene	gene2817	http://www.ncbi.nlm.nih.gov/gene/?term=azo2767
azo2768	azo2768	yfhK	yfhK	3048521	3049915	+	putative two-component system sensor kinase	Putative two-component system sensor kinase%2C%3B~Family membership	gene	gene2818	http://www.ncbi.nlm.nih.gov/gene/?term=azo2768
azo2769	azo2769		azo2769	3049908	3050480	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA964 of Azoarcus sp. EbN1 of 33%25 (gnl|keqq|eba:ebA964(KEGG)). No domains predicted. Signal P reporting signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene2819	http://www.ncbi.nlm.nih.gov/gene/?term=azo2769
azo2770	azo2770	yfhA	yfhA	3050477	3051874	+	putative two component transcriptional regulator	Putative two component transcriptional regulator%2C%3B~Conserved hypothetical protein	gene	gene2820	http://www.ncbi.nlm.nih.gov/gene/?term=azo2770
azo2771	azo2771		azo2771	3051907	3053010	+	conserved hypothetical protein		gene	gene2821	http://www.ncbi.nlm.nih.gov/gene/?term=azo2771
azo2772	azo2772		azo2772	3053030	3054127	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	Region start changed from 3054127 to 3054100 (-27 bases)	gene	gene2822	http://www.ncbi.nlm.nih.gov/gene/?term=azo2772
azo2773	azo2773		azo2773	3054144	3054806	-	hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA988 of Azoarcus sp. EbN1 of 43%25 (gnl|keqq|eba:ebA988(KEGG)). no domains predicted. signal peptie. no TMHs%3B~Conserved hypothetical protein	gene	gene2823	http://www.ncbi.nlm.nih.gov/gene/?term=azo2773
azo2774	azo2774		azo2774	3054806	3055288	-	conserved hypothetical protein	Putative Nudix hydrolase ymfB (EC 3.6.-.-). mutt: mutator mutT protein%3B~Specificity unclear	gene	gene2824	http://www.ncbi.nlm.nih.gov/gene/?term=azo2774
azo2775	azo2775	ilvE2	ilvE2	3055412	3056332	+	branched-chain-amino-acid transaminase	Branched-chain amino acid aminotransferase (BCAT). Acts on leucine isoleucine and valine (By similarity). InterPro: Aminotransferases class-IV%3B~High confidence in function and specificity	gene	gene2825	http://www.ncbi.nlm.nih.gov/gene/?term=azo2775
azo2776	azo2776		azo2776	3056343	3056543	+	conserved hypothetical protein	Hypothetical protein %2C 47%25 identity to TrEMBL%3BQ7NW97%2CTrEMBL%3BQ7VTV4(56%25 identity). No domains%2Crepeats%2C motifs or features present.%3B~Function unclear	gene	gene2826	http://www.ncbi.nlm.nih.gov/gene/?term=azo2776
azo2777	azo2777		azo2777	3056655	3057674	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne1289 of N. europaea of 49%25 (trembl|Q82V21). InterPro: Esterase/lipase/thioesterase family active site (IPR000379). no signal peptide. no TMH.	gene	gene2827	http://www.ncbi.nlm.nih.gov/gene/?term=azo2777
azo2778	azo2778	pgm	pgm	3057734	3059125	+	putative phosphoglucomutase	Phosphomannomutase/phosphoglucomutase (PMM / PGM). The phosphomannomutase activity produces a precursor for alginate polymerization. This enzyme participates in both the breakdown and synthesis of glucose.Catalytic activity: Alpha-D-glucose 1-phosphate %3D alpha-D-glucose 6-phosphate. 58%25 PG/PMM_mutase.IPR005844%3B PG_PMM_ABAI.IPR005845%3B PG_PMM_ABAII.IPR005846%3B PG_PMM_ABAIII.IPR005843%3B PG_PMM_C. Pfam:PF02878%3B PGM_PMM_I%3B 1.PF02879%3B PGM_PMM_II%3B 1.PF02880%3B PGM_PMM_III. PF00408%3B PGM_PMM_IV%3B 1.%3B~High confidence in function and specificity	gene	gene2828	http://www.ncbi.nlm.nih.gov/gene/?term=azo2778
azo2779	azo2779		azo2779	3059222	3060082	+	conserved hypothetical protein	Conserved hypothetical protein with unknown function. No domains predicted. Similarity to TREMBL: trembl|Q9I6D7 (33%25 Pseudomonas aeruginosa%2C hypothetical protein pa0356) / trembl|Q88CQ4 (30%25 Pseudomonas putida (strain KT2440)%2C pp5126)	gene	gene2829	http://www.ncbi.nlm.nih.gov/gene/?term=azo2779
azo2780	azo2780	alaS	alaS	3060174	3062831	-	AlaS protein	Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS). InterPro: Alanyl-tRNA synthetase alaS: alanyl-tRNA synthetase%3B~High confidence in function and specificity	gene	gene2830	http://www.ncbi.nlm.nih.gov/gene/?term=azo2780
azo2781	azo2781		azo2781	3062977	3063528	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA1022 of Azoarcus sp. EbN1 of 86%25 (gnl|keqq|eba:ebA1022(KEGG)). Has PF01923%2C Cobalamin adenosyltransferase%3BIPR002779%2CDUF80%3B This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1%2C2-propanediol degradation. The EutT enzyme appears to be an adenosyl transferase%2C converting CNB12 to AdoB12. No signal peptide or TMH present.	gene	gene2831	http://www.ncbi.nlm.nih.gov/gene/?term=azo2781
azo2782	azo2782		azo2782	3063558	3063926	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to am orf of Azotobacter vinelandii of 51%25 (gi|67087339|gb|EAM06806.1). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B%2CY and X) proteins which are iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide. No TMHs.	gene	gene2832	http://www.ncbi.nlm.nih.gov/gene/?term=azo2782
azo2783	azo2783		azo2783	3063993	3064577	+	DNA repair system specific for alkylated DNA	Probable RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase) (216.5 kDa protein) (ORF1). alkb: alkylated DNA repair protein AlkB.%3B~Function unclear	gene	gene2833	http://www.ncbi.nlm.nih.gov/gene/?term=azo2783
azo2784	azo2784		azo2784	3064764	3065855	+	conserved hypothetical monoamine oxidase	Conserved hypothetical monoamine oxidase. Homology to rsp0431 of R. solanacearum of 34%25 (trembl|Q8XSN6). In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. InterPro: Amine oxidase (IPR002937). Pfam: Flavin containing amine oxidase. probable signal peptide. no TMH.%3B~Family membership	gene	gene2834	http://www.ncbi.nlm.nih.gov/gene/?term=azo2784
azo2785	azo2785		azo2785	3065910	3067784	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to SC3D11.05C of Streptomyces coelicolor of 33%25 (trembl|Q9L1F7(SRS)). Pfam (PF00005): ABC transporter. Pfam (PF00664): ABC transporter transmembrane region. TMHMM reporting three transmembrane helices. No signal peptide.%3B~Conserved hypothetical protein	gene	gene2835	http://www.ncbi.nlm.nih.gov/gene/?term=azo2785
azo2786	azo2786	dinP	dinP	3067852	3068925	-	DNA-directed DNA polymerase	DNA polymerase IV (EC 2.7.7.7) (Pol IV). Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity). InterPro: UMUC family (DNA-repair).%3B~High confidence in function and specificity	gene	gene2836	http://www.ncbi.nlm.nih.gov/gene/?term=azo2786
azo2787	azo2787	rumC	rumC	3068980	3070395	-	conserved hypothetical RumC homolog	Conserved hypothetical RumC homolog. Homology to rumC of P.aeruginosa of 43%25 (gi|20139744|sp|Q9I4U3|RMUC_PSEAE). Pfam: RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action%2C or is itself involved in DNA cleavage at the regions of DNA secondary structures. Signal peptide predicted. 2 TMHs.%2C%3B~Conserved hypothetical protein	gene	gene2837	http://www.ncbi.nlm.nih.gov/gene/?term=azo2787
azo2788	azo2788	aroG	aroG	3070509	3071594	-	phospho-2-dehydro-3-deoxyheptonate aldolase	Phospho-2-dehydro-3-deoxyheptonate aldolase. Homology to aroG of E. coli of 67%25 (AAA23492). Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). InterPro: DAHP synthetase class I (IPR006218) Tigrfam: aroFGH: phospho-2-dehydro-3-deoxyheptonate aldolase Pfam: DAHP synthetase I family no sognal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2838	http://www.ncbi.nlm.nih.gov/gene/?term=azo2788
azo2789	azo2789	kefC	kefC	3071733	3072989	+	putative cation/proton antiporter	Glutathione-regulated potassium-efflux system protein kefC (K(+)/H(+) antiporter). Transport system that facilitates potassium-efflux possibly by potassium-proton antiport.Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. KefC subfamily. 23%25 K_eff.IPR006153%3B Na_H_porter. Pfam:PF00999%3B Na_H_Exchanger%3B 1. TIGRFAMs:TIGR00932%3B 2a37%3B 1. TMHelix:11%3B~High confidence in function and specificity	gene	gene2839	http://www.ncbi.nlm.nih.gov/gene/?term=azo2789
azo2790	azo2790		azo2790	3073104	3074060	+	conserved hypothetical protein	Hypothetical protein RSc2981. TREMBL:Q7W5H6: 56%25 identity%2C 69%25 similarity Belongs to a family of predicted long%2C non-Sec signal sequences and signal-anchor sequences (uncleaved signal sequences). All contain an absolutely conserved pair of arginine residues%2C in a motif approximated by (S/T)-R-R-X-F-L-K%2C followed by a membrane-spanning hydrophobic region. InterPro: IPR000572%3B Oxidored_molyb. IPR006311%3B Tat. Pfam: PF00174%3B Oxidored_molyb%3B 1. TIGRFAMs : TIGR01409%3B TAT_signal_seq%3B SignalP predicted signal peptide (probability:0.954). No transmembrane helices (TMHMM predicted).%3B~Specificity unclear	gene	gene2840	http://www.ncbi.nlm.nih.gov/gene/?term=azo2790
azo2791	azo2791		azo2791	3074075	3074752	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to cv0790 of C. violaceum of 50%25 (tremble:Q7NZX9). Has PF05252%2C Uncharacterised protein family (UPF0191)%3BIPR007916 %3B This family of proteins is functionally uncharacterised. signal peptide. 5 TMHs%3B~Conserved hypothetical protein	gene	gene2841	http://www.ncbi.nlm.nih.gov/gene/?term=azo2791
azo2792	azo2792	mogA	mogA	3074783	3075376	-	molybdopterin biosynthesis Mog protein	Molybdopterin biosynthesis mog protein. Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin) necessary for molybdo-enzymes (By similarity). InterPro: Molybdenum cofactor biosynthesis protein TIGRFAM: molyb_syn: molybdenum cofactor synthesis%3B~High confidence in function and specificity	gene	gene2842	http://www.ncbi.nlm.nih.gov/gene/?term=azo2792
azo2793	azo2793	yjgA	yjgA	3075373	3075936	-	conserved hypothetical protein	Hypothetical protein yjgA%2C 46%25 identity(59%25 similarity) to SwissProt%3BQ8FAF3.SwissProt%3BQ83P53 Has PF04751%2C Protein of unknown function (DUF615)%3BIPR006839%3BThis family of bacterial proteins has no known function. NO Signal Peptide or TMH reported present.%3B~Function unclear	gene	gene2843	http://www.ncbi.nlm.nih.gov/gene/?term=azo2793
azo2794	azo2794	pmbA	pmbA	3076001	3077341	+	probable PmbA protein	Probable PmbA protein. Homology to pmbA of E. coli of 48%25 (sprot|PMBA_ECOLI). MAY FACILITATE THE SECRETION OF THE PEPTIDE ANTIBIOTIC MICROCIN B17 (MCCB17) BY COMPLETING ITS MATURATION. SUPPRESSES THE INHIBITORY ACTIVITY OF THE CARBON STORAGE REGULATOR (CSRA). Pfam: Putative modulator of DNA gyrase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2844	http://www.ncbi.nlm.nih.gov/gene/?term=azo2794
azo2795	azo2795		azo2795	3077588	3078736	+	putative periplasmic substrate binding protein	Similar to TREMBL:Q8G2H7 (58%25 identity)%3B TREMBL:Q8UK55 (57%25 identity)%3B TREMBL:Q89NT9 (58%25 identity). SignalP reporting signal peptide.%3B~Specificity unclear	gene	gene2845	http://www.ncbi.nlm.nih.gov/gene/?term=azo2795
azo2796	azo2796		azo2796	3078912	3080594	-	putative large permease component of TRAP-type transporter	Similar to TREMBL:Q7WQP2 (61%25 identity)%3B TREMBL:Q7W1R6 (61%25 identity)%3B TREMBL:Q8G2H8 (50%25 identity). TIGRFAM (TIGR00786): TRAP transporter%2C DctM subunit. TMHMM predicting 14 transmembrane helices.%3B~Specificity unclear	gene	gene2846	http://www.ncbi.nlm.nih.gov/gene/?term=azo2796
azo2797	azo2797		azo2797	3080591	3081184	-	putative small permease component of TRAP-type transporter	Similar to TREMBL:Q7WQP3 52%25 identity)%3B TREMBL:Q92P73 (54%25 identity)%3B TREMBL:Q8UK53 (48%25 identity). TMHMM reporting four transmembrane helices.%3B~Specificity unclear	gene	gene2847	http://www.ncbi.nlm.nih.gov/gene/?term=azo2797
azo2798	azo2798	gpmB	gpmB	3081308	3081982	+	probable phosphoglycerate mutase	Probable phosphoglycerate mutase GpmB (phosphoglyceromutase) 0(Pgam). Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate 31%25 PG/BPGM_mutase. Pfam:PF00300%3B PGAM%3B 1.%3B~High confidence in function and specificity	gene	gene2848	http://www.ncbi.nlm.nih.gov/gene/?term=azo2798
azo2799	azo2799	kdpD1	kdpD1	3082083	3083501	+	probable two component sensor protein	Probable two component sensor protein%2C%3B~High confidence in function and specificity	gene	gene2849	http://www.ncbi.nlm.nih.gov/gene/?term=azo2799
azo2800	azo2800	kdpE	kdpE	3083510	3084190	+	two component system transcriptional regulatory protein	Transcriptional regulatory protein KdpE%2C%3B~High confidence in function and specificity	gene	gene2850	http://www.ncbi.nlm.nih.gov/gene/?term=azo2800
azo2801	azo2801	glyA	glyA	3084401	3085651	+	serine hydroxymethyltransferase	Serine hydroxymethyltransferase%2C GlyA%2C catalyzes the interconversion of serine%2C glycine%2C and one-carbon (c1) units and is the cell`s major source of c1 units. Similar to sprot|GLYA_ECOLI (61%25) and to pir|D83070 (61%25). Pfam: Serine hydroxymethyltransferase%2C SHMT%3B~High confidence in function and specificity	gene	gene2851	http://www.ncbi.nlm.nih.gov/gene/?term=azo2801
azo2802	azo2802	ribX	ribX	3085693	3086208	+	transcriptional regulator	Transcriptional regulator%2C%3B~Conserved hypothetical protein	gene	gene2852	http://www.ncbi.nlm.nih.gov/gene/?term=azo2802
azo2803	azo2803	ribD	ribD	3086189	3087280	+	AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase)%3B 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)]. CONVERTS 25-DIAMINO-6-(RIBOSYLAMINO)-4(3H)-PYRIMIDINONE 5-PHOSPHATE INTO 5-AMINO-6-(RIBOSYLAMINO)-24(1H3H)- PYRIMIDINEDIONE 5-PHOSPHATE. InterPro: Riboflavin biosynthesis protein RibD TIGRFAM: eubact_ribD: riboflavin biosynthesis protein%3B~High confidence in function and specificity	gene	gene2853	http://www.ncbi.nlm.nih.gov/gene/?term=azo2803
azo2804	azo2804		azo2804	3087294	3088043	-	adenylyltransferase%2C putative	Dinucleotide-utilizing enzyme involved in molybdopterin and/or thiamine biosynthesis Belongs to the hesA/moeB/thiF family%2C by similarity. TIGR00292: thiazole biosynthesis enzyme%3B~High confidence in function and specificity	gene	gene2854	http://www.ncbi.nlm.nih.gov/gene/?term=azo2804
azo2805	azo2805		azo2805	3088140	3088598	-	conserved hypothetical protein	Conserved hypothetical protein. Homlogy to ebA1048 Azoarcus sp. EbN1 of 65%25 (gnl|keqq|eba:ebA1048(KEGG)). no domains predicted. no signal peptide. no TMHs	gene	gene2855	http://www.ncbi.nlm.nih.gov/gene/?term=azo2805
azo2806	azo2806	ctpa	ctpa	3088619	3089998	-	carboxy-terminal processing protease precursor	Carboxy-terminal processing protease precursor (EC 3.4.21.102) (C- terminal processing protease). prc: carboxyl-terminal protease%3B~High confidence in function and specificity	gene	gene2856	http://www.ncbi.nlm.nih.gov/gene/?term=azo2806
azo2807	azo2807		azo2807	3090060	3091394	-	conserved hypothetical protein	Homology to peptidase%2C M23/M37 family InterPro: Peptidase family M23/M37	gene	gene2857	http://www.ncbi.nlm.nih.gov/gene/?term=azo2807
azo2808	azo2808	gpmA	gpmA	3091417	3092166	-	putative phosphoglycerate mutase	2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase(Phosphoglyceromutase)(PGAM)(BPG-dependent PGAM)(dPGM). Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. Involved in the glycolysis%2Cstrongly inhibited by vanadate and regulated by Fur. 65%25 PG/BPGM_mutase.IPR005952%3B Phosphogly_mut1. Pfam:PF00300%3B PGAM%3B 1. TIGRFAMs:TIGR01258%3B pgm_1%3B 1.%3B~High confidence in function and specificity	gene	gene2858	http://www.ncbi.nlm.nih.gov/gene/?term=azo2808
azo2809	azo2809	hlyU	hlyU	3092165	3092641	+	putative transcriptional activator%2C ArsR family	Putative transcriptional activator%2C ArsR family%2C%3B~High confidence in function and specificity	gene	gene2859	http://www.ncbi.nlm.nih.gov/gene/?term=azo2809
azo2810	azo2810		azo2810	3092677	3093093	+	conserved hypothetical protein	Similar to Rhodanese domain protein%2C a sulphurtransferase involved in cyanide detoxification. Hypothetical protein slr1261. InterPro: Rhodanese/cdc25 fold%3B~Function unclear	gene	gene2860	http://www.ncbi.nlm.nih.gov/gene/?term=azo2810
azo2811	azo2811	grxC	grxC	3093090	3093362	+	probable glutaredoxin	Probable glutaredoxin. Homology to grx3 of E. coli. of 53%25 (SWISSPROT:GLR3_ECOLI). The disulfide bond functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. In addition%2C it is also involved in reducing some disulfides in a coupled system with glutathione reductase. Pfam: Glutaredoxin Tigrfam: TIGR00365: glutaredoxin-related protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2861	http://www.ncbi.nlm.nih.gov/gene/?term=azo2811
azo2812	azo2812	secB	secB	3093432	3093887	+	protein export chaperone SecB	Protein-export protein secB. THIS IS ONE OF THE PROTEINS REQUIRED FOR THE NORMAL EXPORT OF ENVELOPE PROTEINS OUT OF THE CELL CYTOPLASM%3B IT MAY BE INVOLVED IN THE INITIATION OF THE EXPORTING PROCESS BY BINDING TO THE NASCENT POLYPEPTIDE VIA A SIGNAL SEQUENCE MAINTAINING A STABLE AND PRE-TRANSLOCATION CONFORMATION. InterPro: Bacterial protein export chaperone SecB secB: protein-export protein SecB%3B~High confidence in function and specificity	gene	gene2862	http://www.ncbi.nlm.nih.gov/gene/?term=azo2812
azo2813	azo2813		azo2813	3093892	3094338	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to CV1128 of Chromobacterium violaceum of 43%25 (trembl:Q7NYZ4). Has Signal Peptide. Has PF06347%2C Protein of unknown function (DUF1058)%3BIPR010466 %3BThis family consists of several hypothetical bacterial proteins of unknown function. No TMHs%3B~Conserved hypothetical protein	gene	gene2863	http://www.ncbi.nlm.nih.gov/gene/?term=azo2813
azo2814	azo2814	gpsA	gpsA	3094335	3095324	+	probable NAD-dependent glycerol-3-phosphate dehydrogenase [NAD(P)+]	Probable NAD-dependent glycerol-3-phosphate dehydrogenase [NAD(P)+]. Homology to gpsA of B. subtilis of 41%25 (SWISSPROT:GPDA_BACSU). NAD-dependent glycerol-3-phosphate dehydrogenase catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. InterPro: NAD-dependent glycerol-3-phosphate dehydrogenase (IPR006109) Pfam: NAD-dependent glycerol-3-phosphate dehydrogeanse signal peptide no TMHs apbA_panE: 2-dehydropantoate 2-reductas%3B~High confidence in function and specificity	gene	gene2864	http://www.ncbi.nlm.nih.gov/gene/?term=azo2814
azo2815	azo2815		azo2815	3095339	3095872	-	tRNA/rRNA methylase	Region start changed from 3095806 to 3095845 (39 bases)	gene	gene2865	http://www.ncbi.nlm.nih.gov/gene/?term=azo2815
azo2816	azo2816	comF	comF	3095879	3096571	-	putative competence protein F	Hypothetical protein yhgH. Members of PRT family are catalytic and regulatory proteins involved in nucleotide synthesis and salvage. The name PRT comes from phosphoribosyltransferase enzymes%2C which carry out phosphoryl transfer reactions on PRPP%2C an activated form of ribose-5-phosphate SPROT:P46846: 33%25 identity%2C 51%25 similarity InterPro%3B IPR000836%3B PRtransferase. Pfam%3B PF00156%3B Pribosyltran%3B 1 Absence of Signal peptide and Transmembrane helices PPR: pentatricopeptide repeat domain%3B~High confidence in function and specificity	gene	gene2866	http://www.ncbi.nlm.nih.gov/gene/?term=azo2816
azo2817	azo2817	bioB	bioB	3096650	3097630	+	biotin synthase	Biotin synthase (Biotin synthetase). catalytic activity: dethiobiotin + sulfur %3D biotin. cofactor: binds a 4fe-4s cluster coordinated with 3 cysteines and an exchangeable s-adenosyl-l-methionine%2C and a 2fe-2s cluster coordinated with 3 cysteines and 1 arginine. pathway: biotin biosynthesis%3B last step. similarity: belongs to the biotin and lipoic acid synthetases family. TIGRFAM: bioB: biotin synthetase%3B~High confidence in function and specificity	gene	gene2867	http://www.ncbi.nlm.nih.gov/gene/?term=azo2817
azo2818	azo2818	bioC2	bioC2	3097630	3098547	+	putative biotin synthesis protein	FUNCTION:BioC is involved in an early%2C but chemically unexplored%2C step in the conversion of pimelic acid to biotin. PATHWAY:Biotin biosynthesis. SIMILARITY:Belongs to the methyltransferase superfamily TREMBL:Q7NPW6 - 46%25 identity%2C61%25 similarity to Chromobacterium bioC. TREMBL:Q82SL9 InterPro (IPR000051): SAM (and some other nucleotide) binding motif. Pfam (PF01209): ubiE/COQ5 methyltransferase family.%3B~Family membership	gene	gene2868	http://www.ncbi.nlm.nih.gov/gene/?term=azo2818
azo2819	azo2819	ssm	ssm	3098555	3099211	+	putative hydrolase	TREMBL:Q7NQN9: 48%25 identity%3B 66%25 similarity SPROT:P53078: 28%25 identity%2C 47%25 similarity InterPro :IPR006402%3B HAD-SF-IA-v3. IPR005833: Hlgnase/hydrlase. IPR005834: Hydrolase. IPR010237%3B Pyr-5-nucltdase. Pfam PF00702%3B Hydrolase%3B 1. PRINTS PR00413%3B HADHALOGNASE. TIGRFAMs TIGR01509%3B HAD-SF-IA-v3%3B 1. TIGR01993%3B Pyr-5-nucltdase%3B SSM1 protein. No signal peptide. No transmembrane helices. Could be an enzyme that inactivates 6-azauracil by modifying it. InterPro: Haloacid dehalogenase/epoxide hydrolase family otsB: trehalose-phosphatase%3B~Family membership	gene	gene2869	http://www.ncbi.nlm.nih.gov/gene/?term=azo2819
azo2820	azo2820		azo2820	3099203	3099697	-	putative acetyltransferase	Putative acetyltransferase%2C42%25 identity to TrEMBL%3BQ7WFK1%2C Putative acetyltransferase [BB4270] [Bordetella bronchiseptica(Alcaligenes bronchisepticus)]. Has PF00583:IPR000182%3BAcetyltransferase (GNAT) family%3BThis family contains proteins with N-acetyltransferase functions.Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs)%2C which catalyze the transfer of an acetyl group from acetyl-CoA to the lysine E -amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin%2C histones tend to be hyperacetylated%2C whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families.	gene	gene2870	http://www.ncbi.nlm.nih.gov/gene/?term=azo2820
azo2821	azo2821	hemB	hemB	3099739	3100743	-	porphobilinogen synthase	Delta-aminolevulinic acid dehydratase chloroplast precursor (ALADH) (ALAD). InterPro: Delta-aminolevulinic acid dehydratase%3B~High confidence in function and specificity	gene	gene2871	http://www.ncbi.nlm.nih.gov/gene/?term=azo2821
azo2822	azo2822	engB	engB	3100989	3101618	-	conserved hypothetical GTP-binding protein	Conserved hypothetical GTP-binding protein. Homology to engB of C. violaceum of 57%25 (trembl|Q7NPV7). Necessary for normal cell division and for the maintenance of normal septation (By similarity). no signal peptide. no TMHs%3B~Family membership	gene	gene2872	http://www.ncbi.nlm.nih.gov/gene/?term=azo2822
azo2823	azo2823	cc42	cc42	3101743	3102369	+	probable cytochrome C4	Probable cytochrome c4. Homology to cc4 of A. vinelandii of 42%25 (sprot|CYC4_AZOVI). Diheme%2C high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems. Pfam: cytochrome C signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2873	http://www.ncbi.nlm.nih.gov/gene/?term=azo2823
azo2824	azo2824		azo2824	3102434	3103303	-	conserved hypothetical protein	Hypothetical protein%2C 51%25 identity (59%25 similarity) to TrEMBL%3BQ8Y0B0. TrEMBL%3B Q7NWN1(53%25 identity). Has PF04305%2C Protein of unknown function (DUF455).IPR007402. Has no signal Peptide or TMH present.%3B~Function unclear	gene	gene2874	http://www.ncbi.nlm.nih.gov/gene/?term=azo2824
azo2825	azo2825	moeA2	moeA2	3103351	3104595	+	molybdopterin biosynthesis protein	Molybdopterin biosynthesis protein moeA. Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin) necessary for molybdo-enzymes. Seems to be involved in a step of activation of molybdenum in the form of thiomolybdenum. InterPro: Molybdenum cofactor biosynthesis protein molyb_syn: molybdenum cofactor synthesis%3B~High confidence in function and specificity	gene	gene2875	http://www.ncbi.nlm.nih.gov/gene/?term=azo2825
azo2826	azo2826	rpiA	rpiA	3104643	3105311	+	putative ribose 5-phosphate isomerase	Ribose 5-phosphate isomerase A (Phosphoriboisomerase A)(PRI). Involved in the nonoxidative branch of the pentose phosphate pathway.Catalytic activity: D-ribose 5-phosphate %3D D-ribulose 5-phosphate. 60%25 RpiA. Pfam:PF06026%3B Rib_5-P_isom_A%3B 1. TIGRFAMs:TIGR00021%3B rpiA%3B 1.%3B~High confidence in function and specificity	gene	gene2876	http://www.ncbi.nlm.nih.gov/gene/?term=azo2826
azo2827	azo2827	phoU	phoU	3105356	3106069	+	phosphate uptake regulator probably	Phosphate transport system protein phoU. Probably involved in phosphate transport and metabolism. In P aeruginosa PhoU is involved in the regulation of alkaline phosphatase expression and in the induction of Pi taxis.%3B~High confidence in function and specificity	gene	gene2877	http://www.ncbi.nlm.nih.gov/gene/?term=azo2827
azo2828	azo2828		azo2828	3106151	3106423	-	conserved hypothetical protein	Hpyothetical Protein%2C 69%25 identity (84%25 simialarity) to SwissProt%3B Q8Y010. Has PF04362%2C Protein of unknown function (DUF495)%3BIPR007457%3BMethionine start codon is known to be cleaved from Escherichia coli protein YggX (P52065). YggX is also known to be highly abundant in E. coli K-12. No Signal peptide or TMH present.	gene	gene2878	http://www.ncbi.nlm.nih.gov/gene/?term=azo2828
azo2829	azo2829		azo2829	3106427	3108166	-	GGDEF/PAS/PAC-domain containing protein	GGDEF/PAS/PAC-domain containing protein	gene	gene2879	http://www.ncbi.nlm.nih.gov/gene/?term=azo2829
azo2830	azo2830	argA	argA	3108245	3109603	-	probable amino-acid N-acetyltransferase	Amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the 'acetylated' ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. Similar to sprot|ARGA_YERPE (44%25) and to sprot|ARGA_ECOLI (43%25). Pfam (PF00696): Aspartokinase superfamily Pfam (PF00583): GCN5-related N-acetyltransferase%3B~Specificity unclear	gene	gene2880	http://www.ncbi.nlm.nih.gov/gene/?term=azo2830
azo2831	azo2831		azo2831	3109740	3111248	-	conserved hypothetical protein	Hypothetical protein%2C 53%25 identity (69%25 similarity) to TrEMBL%3BQ7NQR2. TREMBL%3BQ74F81. Has 2 copies of PF03976%2CIPR005660%2C Domain of unknown function (DUF344)%3BThis presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs that are probably functionally important. No Signal Peptide or TMH present.	gene	gene2881	http://www.ncbi.nlm.nih.gov/gene/?term=azo2831
azo2832	azo2832		azo2832	3111292	3112023	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to BPP1163 of B.parapertussis of 50%25 (trembl:Q7WB46). Has PF04452%2CProtein of unknown function (DUF558)%3BIPR006700:Bacterial protein of unknown function%2C occasionally found adjacent to the diacylglycerol kinase catalytic domain DAGKc. No signal peptide or TMH present.	gene	gene2882	http://www.ncbi.nlm.nih.gov/gene/?term=azo2832
azo2833	azo2833	suhB2	suhB2	3112072	3112881	+	putative Inositol-1-monophosphatase	Inositol-1-monophosphatase(IMPase)(Inositol-1-phosphatase)(I-1-Pase).May act by enhancing the synthesis or degradation of phosphorylated messenger molecules. Catalytic activity: myo-inositol 1-phosphate + h(2)o %3D myo-inositol + phosphate. 36%25 Inositol_P. Pfam:PF00459%3B Inositol_P%3B 1.%3B~High confidence in function and specificity	gene	gene2883	http://www.ncbi.nlm.nih.gov/gene/?term=azo2833
azo2834	azo2834		azo2834	3112954	3113214	+	Hypothetical protein	Hypothetical protein%2C has very weak homology with hits in the database. Has No domains%2C repeats%2C motifs or features could be predicted with confidence above threshold scores.	gene	gene2884	http://www.ncbi.nlm.nih.gov/gene/?term=azo2834
azo2835	azo2835	prkB	prkB	3113267	3114136	+	probable phosphoribulokinase	Probable phosphoribulokinase. Homology to prkB of r. sphaeroides of 59%25 (sprot|KPP2_RHOSH). Phosphoribulokinase catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1%2C5-phosphate%2C a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms. InterPro: Phosphoribulokinase family (IPR006082) Pfam: Phosphoribulokinase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2885	http://www.ncbi.nlm.nih.gov/gene/?term=azo2835
azo2836	azo2836	tkt	tkt	3114267	3116330	+	putative transketolase	Transketolasecatalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor%2C such as ribose 5-phosphate%2C to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme%2C together with transaldolase%2C provides a link between the glycolytic and pentose-phosphate pathways. Tkt requires thiamine pyrophosphate as a cofactor. 60%25 BacTransketolase.IPR005476%3B Transketolase_C. IPR005475%3B Transketolase_CR.IPR005474%3B Transketolase_N. IPR009014%3B Transketo_C_like. Pfam:PF02780%3B Transketolase_C%3B 1.PF00456%3B Transketolase_N%3B 1. PF02779%3B Transket_pyr%3B 1. TIGRFAMs:TIGR00232%3B tktlase_bact%3B 1.%3B~High confidence in function and specificity	gene	gene2886	http://www.ncbi.nlm.nih.gov/gene/?term=azo2836
azo2837	azo2837	gapA	gapA	3116428	3117444	+	putative glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase(GAPDH)plays an important role in glycolysis and gluconeogenesis by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1%2C3-diphospho-glycerate.61%25 GAPDH-I.IPR000173%3B GAP_dhdrogenase. Pfam:PF02800%3B Gp_dh_C%3B 1.PF00044%3B Gp_dh_N%3B 1. TIGRFAMs:TIGR01534%3B GAPDH-I%3B 1.%3B~High confidence in function and specificity	gene	gene2887	http://www.ncbi.nlm.nih.gov/gene/?term=azo2837
azo2838	azo2838		azo2838	3117462	3117929	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to xcc3191 of X. campestris of 41%25 (trembl|Q8P5Z1). no domains predicted. signal peptide. no TMHs.%3B~Function unclear	gene	gene2888	http://www.ncbi.nlm.nih.gov/gene/?term=azo2838
azo2839	azo2839	pgk	pgk	3118003	3119187	+	putative phosphoglycerate kinase	Phosphoglycerate kinaseis an enzyme that catalyses the formation of ATP to ADP and viceversa. In the second step of the second phase in glycolysis%2C 1%2C3-diphosphoglycerate is converted to 3-phosphoglycerate%2Cforming one molecule of ATP. If the reverse were to occur%2Cone molecule of ADP would be formed. 59%25 PGK. Pfam:PF00162%3B PGK%3B 1.%3B~High confidence in function and specificity	gene	gene2889	http://www.ncbi.nlm.nih.gov/gene/?term=azo2839
azo2840	azo2840		azo2840	3119266	3119676	-	putative secreted protein	Hypothetical secreted protein. No good homology to the data bank. No domains predicted. Signal peptide reported to be present. No TMH reported present. ssl1: transcription factor ssl1	gene	gene2890	http://www.ncbi.nlm.nih.gov/gene/?term=azo2840
azo2841	azo2841		azo2841	3119803	3120210	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to an orf of the uncultured bacterium 463 of 33%25 (tremblnew|AAS07979). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene2891	http://www.ncbi.nlm.nih.gov/gene/?term=azo2841
azo2842	azo2842	pykA	pykA	3120337	3121779	+	putative pyruvate kinase	Pyruvate kinase (PK) catalyses the final step in glycolysis%2C the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP:ADP + phosphoenolpyruvate %3D ATP + pyruvate. 52%25 Pyruvate_kinase. Pfam:PF00224%3B PK%3B 1.PF02887%3B PK_C%3B 1. TIGRFAMs:TIGR01064%3B pyruv_kin%3B 1.%3B~High confidence in function and specificity	gene	gene2892	http://www.ncbi.nlm.nih.gov/gene/?term=azo2842
azo2843	azo2843	fba	fba	3121901	3122965	+	putative fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase is a glycolytic enzyme that catalyzes the reversible aldol cleavage or condensation of fructose-1%2C6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. 77%25 Fruct_bisP_Calv.IPR000771%3B K_bP_aldolase. Pfam:PF01116%3B F_bP_aldolase%3B 1. TIGRFAMs:TIGR00167%3B cbbA%3B 1.TIGR01521%3B FruBisAldo_II_B%3B 1. TIGR01859%3B fruc_bis_ald_%3B 1.TIGR01858%3B tag_bisphos_ald%3B 1.%3B~High confidence in function and specificity	gene	gene2893	http://www.ncbi.nlm.nih.gov/gene/?term=azo2843
azo2844	azo2844	exaA1	exaA1	3123031	3125097	-	putative quinoprotein ethanol dehydrogenase	Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 73%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present.%3B~High confidence in function and specificity	gene	gene2894	http://www.ncbi.nlm.nih.gov/gene/?term=azo2844
azo2845	azo2845	qbdB2	qbdB2	3125178	3126107	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to qbdB of Pseudomonas putida of 56%25 (gi|22779360|dbj|BAC15558.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%2C%3B~Conserved hypothetical protein	gene	gene2895	http://www.ncbi.nlm.nih.gov/gene/?term=azo2845
azo2846	azo2846		azo2846	3126355	3128244	+	Sigma-54-dependent transcriptional regulator	Similar to TREMBL:Q9F9U3 (44%25 identity)%3B TREMBL:Q88H93 (39%25 identity)%3B SWISSPROT:P28614 (35%25 identity). InterPro (IPR002078): Sigma-54 factor interaction domain. InterPro (IPR002197): Helix-turn-helix%2C Fis-type. InterPro (IPR003593): AAA ATPase. Pfam (PF02954): Bacterial regulatory protein%2C Fis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene2896	http://www.ncbi.nlm.nih.gov/gene/?term=azo2846
azo2847	azo2847		azo2847	3128356	3129030	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene2897	http://www.ncbi.nlm.nih.gov/gene/?term=azo2847
azo2848	azo2848		azo2848	3129035	3129451	+	putative AIG2-like protein	Putative AIG2-like protein. Homology to AIG2 of a. thaliana of 27%25 (sprot|AIG2_ARATH) AIG2 is an Arabidopsis proteins that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. Pfam: AIG2-like family singal peptide no TMHs	gene	gene2898	http://www.ncbi.nlm.nih.gov/gene/?term=azo2848
azo2849	azo2849		azo2849	3129466	3131328	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to AQ_563 of Aquifex aeolicus of 37%25 (trembl|O66835(SRS)). Has IPR003660%3BPF00672%3BHAMP domain:This domain is known as the HAMP domain for histidine kinases%2C adenylyl cyclases%2Cmethyl binding proteins and phosphatases. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. Has IPR000160(GGDEF)domain%2Cthis domain is found linked to a wide range of non-homologous domains in a variety of bacteria. The function of this domain is unknown%2C however it has been shown to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins%2C namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum%2C both of which regulate the turnover of cyclic diguanosine monophosphate. TMHMM reporting 1 TMH present. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene2899	http://www.ncbi.nlm.nih.gov/gene/?term=azo2849
azo2850	azo2850		azo2850	3131436	3133073	-	putative sugar transport protein	Proline/betaine transporter (Proline porter II) (PPII). STRETCH-INACTIVATED PROLINE/BETAINE TRANSPORTER. PROP IS BOTH AN OSMOSENSOR AND AN OSMOREGULATOR WHICH IS AVAILABLE TO PARTICIPATE EARLY IN THE BACTERIAL OSMOREGULATORY RESPONSE. MEDIATES THE ACTIVE ACCUMULATION OF SOLUTES SUCH AS PROLINE GLYCINE BETAINE STACHYDRINE PIPECOLIC ACID ECTOINE AND TAURINE.PROBABLE MtbA PROTEIN 2A0106: citrate-proton symport%3B~Specificity unclear	gene	gene2900	http://www.ncbi.nlm.nih.gov/gene/?term=azo2850
azo2851	azo2851		azo2851	3133259	3134608	+	conserved hypothetical glycerophosphoryl diester phosphodiesterase	Conserved hypothetical glycerophosphoryl diester phosphodiesterase. Homology to TdenA01001091 of Thiobacillus denitrificans of 66%25 (gnl|keqq|mca:MCA1922(KEGG)).InterPro: Glycerophosphoryl diester phosphodiesterase (IPR004129). Pfam: Glycerophosphoryl diester phosphodiesterase. signal peptide. no TMHs	gene	gene2901	http://www.ncbi.nlm.nih.gov/gene/?term=azo2851
azo2852	azo2852	cddD	cddD	3134727	3136160	-	probable aldehyde dehydrogenase (NAD+)	Probable aldehyde dehydrogenase (NAD+). Homology to cddD of R. ruber SC1 of 59%25 (trembl|Q938F1) Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. Pfam: Aldehyde dehydrogenase family no TMHs no signal peptide%3B~Family membership	gene	gene2902	http://www.ncbi.nlm.nih.gov/gene/?term=azo2852
azo2853	azo2853		azo2853	3136366	3136650	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA3284 of Pseudomonas aeruginosa of 40%25 (trembl|Q9HYV9(SRS)). No domains predicted. Signal peptide present. No TMH Present.%3B~Conserved hypothetical protein	gene	gene2903	http://www.ncbi.nlm.nih.gov/gene/?term=azo2853
azo2854	azo2854		azo2854	3136724	3137569	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to PA3283 of P.aeruginosa of 54%25 (trembl:Q9HYW0). Has PF05114%2CProtein of unknown function (DUF692)%3BIPR007801:This family consists of several uncharacterised bacterial proteins. No signal peptide or TMH present.	gene	gene2904	http://www.ncbi.nlm.nih.gov/gene/?term=azo2854
azo2855	azo2855		azo2855	3137566	3138312	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to PP2399 of P.putida of 36%25 (trembl:Q88K92). No domains predicted. No TMHs. No signal peptide.	gene	gene2905	http://www.ncbi.nlm.nih.gov/gene/?term=azo2855
azo2856	azo2856		azo2856	3138309	3138881	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA4104 of Pseudomonas aeruginosa of 46%25 (trembl|Q9HWS4(SRS)). No domains predictec. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene2906	http://www.ncbi.nlm.nih.gov/gene/?term=azo2856
azo2857	azo2857	sigX	sigX	3138878	3139468	+	putative RNA polymerase sigma factor	Putative RNA polymerase sigma factor%2C Myxococcus xanthus carQ%3B Alcaligenes eutrophus plasmid pMOL28-encoded cnrH%3B Escherichia coli fecI%3B Pseudomonas syringae hrpL%3B rpoE from Escherichia coli%2C Salmonella typhimurium and Haemophilus influenzae%3B Streptomyces coelicolor sigE%3B and Bacillus subtilis sigma factors sigV%2C sigX%2C sigY and sigZ.%3B~High confidence in function and specificity	gene	gene2907	http://www.ncbi.nlm.nih.gov/gene/?term=azo2857
azo2858	azo2858		azo2858	3139462	3139650	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV2972 of C.violaceum of 51%25 (trembl:Q7NTT1). No domains predicted. No TMHs. No signal peptide.	gene	gene2908	http://www.ncbi.nlm.nih.gov/gene/?term=azo2858
azo2859	azo2859	estB	estB	3139801	3140484	+	probable carboxylesterase	Probable carboxylesterase. Homology to estB of P. flourescens of 41%25 (sprot|EST2_PSEFL). Hydrolyzes carboxylic ester bonds with relatively broad substrate specificity. InterPro: Phospholipase/Carboxylesterase(IPR003140)%3B Esterase/lipase/ thioesterase family acitve site (IPR000379) Pfam: Phospolipase/Carboxylesterase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2909	http://www.ncbi.nlm.nih.gov/gene/?term=azo2859
azo2860	azo2860		azo2860	3140490	3141521	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PJS6w01004232 of Polaromonas sp. JS666 of 53%25 (gi|54028976|ref|ZP_00361120.1|(NBCI ENTREZ)). InterPro:IPR002035%3B VWF_A. The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders. In von Willebrand factor%2C the type A domain (vWF) is the prototype for a protein superfamily. Pfam:PF00092%3B VWA%3B 1. SMART:SM00327%3B VWA%3B 1. PROSITE:PS50234%3B VWFA%3B MIP: MIP family channel proteins. No signal peptide present. No. of TMH's: 3 (TMHMM predicted).%3B~Conserved hypothetical protein	gene	gene2910	http://www.ncbi.nlm.nih.gov/gene/?term=azo2860
azo2861	azo2861		azo2861	3141518	3142456	-	conserved hypothetical protein	Hypothetical protein Rv1480/MT1527/Mb1516. TREMBL:Q7MUE8: 33%25 identity%2C 52%25 similarity. This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor%2C type A domain InterPro: IPR002881%3B DUF58. Pfam: PF01882%3B DUF58 Absence of transmembrane helices (TMHMM predicted) cmk: cytidylate kinase%3B~Specificity unclear	gene	gene2911	http://www.ncbi.nlm.nih.gov/gene/?term=azo2861
azo2862	azo2862	moxR2	moxR2	3142431	3143453	-	MoxR protein%2C putative	MoxR protein (MxaR protein). MAY BE INVOLVED IN THE REGULATION OF FORMATION OF ACTIVE METHANOL DEHYDROGENASE. TREMBLnew:CAE55395: 54%25 identity%2C 71%25 similarity InterPro:IPR003593%3B AAA_ATPase. IPR000523%3B Mg_chelatse_chII. Pfam PF01078%3B Mg_chelatase%3B 1. SMART SM00382%3B AAA%3B 1 InterPro IPR003593%3B AAA_ATPas ruvB: Holliday junction DNA helicase Ru%3B~High confidence in function and specificity	gene	gene2912	http://www.ncbi.nlm.nih.gov/gene/?term=azo2862
azo2863	azo2863		azo2863	3143481	3144263	-	conserved hypothetical serine protease	Conserved hypothetical serine protease. Homology to PJS6w01004229 of Polaromonas sp. JS666 of 53%25 (gi|54028973|ref|ZP_00361117.1|(NBCI ENTREZ)). Interpro: HtrA/DegQ protease family (IPR001940)%3B Serine protease%2Ctrypsine family (IPR001254). Pfam: Typsin. probable signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene2913	http://www.ncbi.nlm.nih.gov/gene/?term=azo2863
azo2864	azo2864		azo2864	3144672	3145691	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. TREMBL:Q9CBL9: 33%25 identity%3B 52%25 similarity The von Willebrand factor is a large multimeric glycoprotein found in bloodplasma. Mutant forms are involved in the aetiology of bleeding disorders. In von Willebrand factor%2C the type A domain (vWF) is the prototype for a protein superfamily Hypothetical protein MAV335. InterPro:IPR002035%3B VWF_A. Pfam:PF00092%3B VWA%3B 1. SMART:SM00327%3B VWA 2_A_01_02: Multidrug resistance protein Presence of Signal peptide (SignalP predicted) Presence of 3 transmembrane helices (TMHMM predicted).%3B~Conserved hypothetical protein	gene	gene2914	http://www.ncbi.nlm.nih.gov/gene/?term=azo2864
azo2865	azo2865		azo2865	3145796	3146101	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CE0355 of C.efficiens of 56%25 (trembl:Q8FSM8). No domains predicted. No THs. No signal peptide.	gene	gene2915	http://www.ncbi.nlm.nih.gov/gene/?term=azo2865
azo2866	azo2866		azo2866	3146175	3147203	+	GGDEF/PAS/PAC-domain containing protein	GGDEF/PAS/PAC-domain containing protein	gene	gene2916	http://www.ncbi.nlm.nih.gov/gene/?term=azo2866
azo2867	azo2867		azo2867	3147200	3148141	-	putative transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 44%25 1 helixturnhelix PF03466 LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~Specificity unclear	gene	gene2917	http://www.ncbi.nlm.nih.gov/gene/?term=azo2867
azo2868	azo2868	ygiD	ygiD	3148259	3149065	+	protocatechuate 4%2C5-dioxygenase	Putative cytoplasmic protein ygiD%2C 35%25 identity to TrEMBL%3BQ8ZLZ3. TrEMBL%3BQ8XBP3%2CQ83JK6. Has PF02900%2CCatalytic LigB subunit of aromatic ring-opening dioxygenase%3BIPR004183:The LigAB enzyme (a protocatechuate 4%2C5-dioxygenase)%2C of Sphingomonas paucimobilis oxidizes protocatechuate (or 3%2C4-dihydroxybenzoic acid%2C PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family%2C which catalyzes the ring-opening reaction of protocatechuate and related compounds.%3B~Conserved hypothetical protein	gene	gene2918	http://www.ncbi.nlm.nih.gov/gene/?term=azo2868
azo2869	azo2869		azo2869	3149082	3149636	+	conserved hypothetical cytochrome B561	Conserved hypothetical cytochrome B561. Homology to cv3278 of C. violaceum of 69%25 (trembl|Q7NSZ1). Involved in electronen transport. no domains reported. no signal peptide. 4 TMHs%3B~Family membership	gene	gene2919	http://www.ncbi.nlm.nih.gov/gene/?term=azo2869
azo2870	azo2870		azo2870	3149682	3150251	+	conserved hypothetical YceI like protein	Conserved hypothetical YceI like protein. Homology to CV3277 of C.violaceum of 51%25 (tremble:Q7NSZ2). Has PF04264%2C YceI like family%3B(IPR007372): E. coli YceI is a base-induced periplasmic protein. Its function has not yet been characterised. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene2920	http://www.ncbi.nlm.nih.gov/gene/?term=azo2870
azo2871	azo2871		azo2871	3150311	3150889	+	conserved hypothetical YceI like protein	Conserved hypothetical YceI like protein. Homology to cv3276 of C. violaceum of 69%25 (trembl|Q7NSZ3(SRS)) Pfam: YceI like family E. coli. YceI is a base-induced periplasmic protein. Its function has not yet been characterised. signal peptide. no TMHs%3B~Family membership	gene	gene2921	http://www.ncbi.nlm.nih.gov/gene/?term=azo2871
azo2872	azo2872		azo2872	3151019	3152311	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE1887 of Nitrosomonas europaea of 39%25 (trembl|Q82TK0). No domains predicted. No signal peptide. TMHMM2 program predicts presence of 1 TMH's.%3B~Conserved hypothetical protein	gene	gene2922	http://www.ncbi.nlm.nih.gov/gene/?term=azo2872
azo2873	azo2873	purC	purC	3152720	3153655	+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Phosphoribosylaminoimidazole-succinocarboxamide synthase) (SAICAR synthase)%3B~High confidence in function and specificity	gene	gene2923	http://www.ncbi.nlm.nih.gov/gene/?term=azo2873
azo2874	azo2874		azo2874	3153726	3154457	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to AGR_C_1551 of A.tumefaciens of 40%25 (trembl:Q7D0J2). No domains predicted. No TMHs. No signal peptide.	gene	gene2924	http://www.ncbi.nlm.nih.gov/gene/?term=azo2874
azo2875	azo2875		azo2875	3154417	3154797	-	conserved hypothetical protein	Conserved hypothetical protein%2C 67%25 similarity to TrEMBL:Q8UH3. No good homology with hits in the DB particularly at the start. Signal peptide reported present. No TMH present.%3B~Family membership	gene	gene2925	http://www.ncbi.nlm.nih.gov/gene/?term=azo2875
azo2876	azo2876		azo2876	3155005	3155778	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to cv3790 of C. violaceum of 36%25 (cvi:CV3790(KEGG). no domains predicted. no signal peptide. 6 TMHs.%3B~Conserved hypothetical protein	gene	gene2926	http://www.ncbi.nlm.nih.gov/gene/?term=azo2876
azo2877	azo2877	prlC	prlC	3155906	3157972	+	probable oligopeptidase A	Oligopeptidase A counts to the Thimet oligopeptidase family which cleave medium sized peptides. Similar to trembl|Q7VZC9 (49%25)%2C to trembl|Q9JX57 (48%25) and to sprot|OPDA_ECOLI (51%25). Pfam (PF01432): Peptidase family M3%3B~Specificity unclear	gene	gene2927	http://www.ncbi.nlm.nih.gov/gene/?term=azo2877
azo2878	azo2878		azo2878	3157969	3158451	+	conserved hypothetical protein	Low similiraty to glutaredoxin protein Grx. Has a glutathione-disulfide oxidoreductase activity in the presence of nadph and glutathione reductase.Reduces low molecular weight disulfides and proteins (by similarity). Hypothetical protein yjbD. Signal peptide%3B~Function unclear	gene	gene2928	http://www.ncbi.nlm.nih.gov/gene/?term=azo2878
azo2879	azo2879	amtE	amtE	3158471	3161860	-	probable ammonia permease with sensory box/GGDEF domains	Putative ammonium transporter with sensory/GGDEF boxes. TREMBL:Q88M14: 50%25 identity%3B 65%25 similarity%3B TREMBL:Q7UK31: 46%25 identity%3B 58%25 siilarity InterPro:IPR001633%3B EAL. IPR000160%3B GGDEF. IPR001610%3B PAC. IPR000014%3B PAS_domain. IPR001905%3B Ammonium_transpt. IPR003594%3B ATPbind_ATPase Pfam: PF00563%3B EAL%3B PF00990%3B GGDEF%3B PF00785%3B PAC%3B PF00989%3B PAS%3B PF00909%3B Ammonium_transp SMART SM00267%3B DUF1%3B SM00052%3B DUF2%3B SM00086%3B PAC%3B SM00091%3B PAS amt: ammonium transporter Nonsecretory protein with signal peptide (SignalP predicted). Presence of 12 transmembrane helices (TMHMM predicted).%3B~Specificity unclear	gene	gene2929	http://www.ncbi.nlm.nih.gov/gene/?term=azo2879
azo2880	azo2880		azo2880	3162198	3162959	+	exodeoxyribonuclease III	Region start changed from 3161811 to 3162171 (-360 bases)	gene	gene2930	http://www.ncbi.nlm.nih.gov/gene/?term=azo2880
azo2881	azo2881		azo2881	3162965	3163681	+	Hypothetical protein	Hypothetical protein%2C has weak homology with other hits in the Database. TrEMBL%3BQ67LU3(34%25). Has Signal Peptide.	gene	gene2931	http://www.ncbi.nlm.nih.gov/gene/?term=azo2881
azo2882	azo2882	nnr	nnr	3163695	3164381	+	putative transcription regulator%2C Nnr-type	Putative transcription regulator%2C Nnr-type.%3B~Family membership	gene	gene2932	http://www.ncbi.nlm.nih.gov/gene/?term=azo2882
azo2883	azo2883		azo2883	3164450	3164641	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RPA1091 of R.palustris of 57%25 (tremble:CAE26534). No domains predicted. No TMH. signal peptide present.%3B~Conserved hypothetical protein	gene	gene2933	http://www.ncbi.nlm.nih.gov/gene/?term=azo2883
azo2884	azo2884	ksgA	ksgA	3164700	3165497	-	dimethyladenosine transferase	Dimethyladenosine transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase). Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3end of 16S rRNA in the 30S particle. Its inactivation leads to kasugamycin resistance. ksgA: dimethyladenosine transferase%3B~High confidence in function and specificity	gene	gene2934	http://www.ncbi.nlm.nih.gov/gene/?term=azo2884
azo2885	azo2885	pdxA	pdxA	3165517	3166509	-	4-hydroxythreonine-4-phosphate dehydrogenase	4- (phosphohydroxy)-L-threonine dehydrogenase. Catalyzes the NAD-dependent oxidation of 4-(phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which spontaneously decarboxylate to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) (By similarity).%3B~High confidence in function and specificity	gene	gene2935	http://www.ncbi.nlm.nih.gov/gene/?term=azo2885
azo2886	azo2886	surA	surA	3166514	3167833	-	putative peptidyl-prolyl cis-trans isomerase	Putative peptidyl-prolyl cis-trans isomerase. Homology to surA of E. coli of 32%25 (sprot|SURA_ECOLI). Assist in the folding of extracytoplasmic proteins. Essential for the survival of E.coli in stationary phase. Pfam: PPIC-type PPIASE domain signal peptide no TMHs%3B~Family membership	gene	gene2936	http://www.ncbi.nlm.nih.gov/gene/?term=azo2886
azo2887	azo2887	ostA	ostA	3167868	3169991	-	organic solvent tolerance protein precursor	Organic solvent tolerance protein precursor.%3B~High confidence in function and specificity	gene	gene2937	http://www.ncbi.nlm.nih.gov/gene/?term=azo2887
azo2888	azo2888		azo2888	3170525	3171544	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne0191 of N. europaea of 61%25 (trembl|Q82XR3). Pfam: DUF227. no signal peptide. no TMHs.	gene	gene2938	http://www.ncbi.nlm.nih.gov/gene/?term=azo2888
azo2889	azo2889		azo2889	3171570	3172298	+	Nucleotidyltransferase	Specificity unclear	gene	gene2939	http://www.ncbi.nlm.nih.gov/gene/?term=azo2889
azo2890	azo2890	pepP	pepP	3172306	3173652	+	probable Xaa-Pro aminopeptidase	Xaa-Pro aminopeptidase%2C%3B~Specificity unclear	gene	gene2940	http://www.ncbi.nlm.nih.gov/gene/?term=azo2890
azo2891	azo2891	ubiH	ubiH	3173642	3174805	+	probable 2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase protein	ubiH%3B aromatic-ring hydroxylase (flavoprotein monooxygenase) Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone. Ubiquinone biosynthesis pathway%2C by similarity.%3B~High confidence in function and specificity	gene	gene2941	http://www.ncbi.nlm.nih.gov/gene/?term=azo2891
azo2892	azo2892	dusB	dusB	3174872	3175945	+	conserved hypothetical tRNA-dihydrouridine synthase	Conserved hypothetical tRNA-dihydrouridine synthase. Homology to dusB of Azoarcus sp. EbN1 of 81%25 (gnl|keqq|eba:ebA1152(KEGG)). Pfam: Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5%2C6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes%2C and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown%2C but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities%2C which may overlap. Dus 1 (Q9HGN6) from Saccharomyces cerevisiae acts on pre-tRNA-Phe%2C while Dus 2 (P53720) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit%2C requiring NADPH or NADH%2C and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. No signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene2942	http://www.ncbi.nlm.nih.gov/gene/?term=azo2892
azo2893	azo2893		azo2893	3175942	3176178	+	putative fis-like DNA-binding protein	Putative fis-like DNA-binding protein%2C 57%25 Identity to SwissProt%3BQ8Y231%2CTrEMBL%3BQ7P0M2(58%25 Identity). Has PF02954%2C Bacterial regulatory protein%2C Fis family%3BIPR002197 HTH_Fis%3B The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions%2C and binds specifically to weakly related DNA sequences. It activates ribosomal RNA transcription%2C and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli. Some of its functions include inhibition of the initiation of DNA replication from the OriC site%2Cand promotion of Hin-mediated DNA inversion.	gene	gene2943	http://www.ncbi.nlm.nih.gov/gene/?term=azo2893
azo2894	azo2894	purH	purH	3176279	3177862	+	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase)%3B IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] InterPro: AICARFT/IMPCHase bienzyme%3B~High confidence in function and specificity	gene	gene2944	http://www.ncbi.nlm.nih.gov/gene/?term=azo2894
azo2895	azo2895	purD	purD	3177876	3179153	+	Phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase (Phosphoribosylglycinamide synthetase) (Glycinamide ribonucleotide synthetase) (GAR synthetase) (GARS)%3B~High confidence in function and specificity	gene	gene2945	http://www.ncbi.nlm.nih.gov/gene/?term=azo2895
azo2896	azo2896	hemF	hemF	3179160	3180074	+	HemF protein	Coproporphyrinogen III oxidase aerobic (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase). catalytic activity: oproporphyrinogen-iii + o(2) %3D protoporphyrinogen-ix + 2 co(2) + 2 h(2)o. pathway: porphyrin biosynthesis. similarity: belongs to the aerobic coproporphyrinogen iii oxidase family.%3B~High confidence in function and specificity	gene	gene2946	http://www.ncbi.nlm.nih.gov/gene/?term=azo2896
azo2897	azo2897	sulP1	sulP1	3180121	3181881	+	putative sulfate transporter	Sulfate permease%2C SulP. Permease member of the MFS superfamily%2C involved in the transport of sulfate. Putative sulfate transporter ychM. InterPro: IPR002645%3B STAS. IPR001902%3B Sulph_transpt. Pfam: PF01740%3B STAS%3B 1. PF00916%3B Sulfate_transp%3B 1. SignalP: present. HIGH-AFFINITY H+/SULFATE COTRANSPORTER THAT MEDIATES THE UPTAKE OF SULFATE BY PLANT ROOTS FROM LOW CONCENTRATIONS OF SULFATE IN THE SOIL SOLUTION.%3B~High confidence in function and specificity	gene	gene2947	http://www.ncbi.nlm.nih.gov/gene/?term=azo2897
azo2898	azo2898	rpsP	rpsP	3181964	3182215	+	30S ribosomal protein S16	30S ribosomal protein S16.%3B~High confidence in function and specificity	gene	gene2948	http://www.ncbi.nlm.nih.gov/gene/?term=azo2898
azo2899	azo2899	rimM	rimM	3182235	3182741	+	conserved hypothetical 16S rRNA processing protein	Conserved hypothetical 16S rRNA processing protein rimM. Homology to rimM of R. solanacearum of 44%25 (sprot|RIMM_RALSO). Essential for efficient processing of 16S rRNA. Probably part of the 30S subunit prior to or during the final step in the processing of 16S free 30S ribosomal subunits. It could be some accessory protein needed for efficient assembly of the 30S subunit. It is needed in a step prior to rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes. Pfam: RimM. no signal peptide. no TMHs%3B~High confidence in function and specificity	gene	gene2949	http://www.ncbi.nlm.nih.gov/gene/?term=azo2899
azo2900	azo2900	trmD	trmD	3182723	3183535	+	tRNA (guanine-N1-)-methyltransferase	tRNA (Guanine-N(1)-)-methyltransferase (EC 2.1.1.31) (M1G- methyltransferase) (tRNA [GM37] methyltransferase). Specifically methylates guanosine-37 in various tRNAs%3B~High confidence in function and specificity	gene	gene2950	http://www.ncbi.nlm.nih.gov/gene/?term=azo2900
azo2901	azo2901	rplS	rplS	3183621	3184007	+	50S ribosomal protein L19	50S ribosomal protein L19. This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site%3B~High confidence in function and specificity	gene	gene2951	http://www.ncbi.nlm.nih.gov/gene/?term=azo2901
azo2902	azo2902		azo2902	3184128	3185204	-	probable integral membrane protein	TREMBL:Q8XWQ6: 39%25 identity%2C 56%25 similarity Hypothetical protein HI1703. InterPro: IPR005495%3B YjgP_YjgQ. Pfam: PF03739%3BPfam :DUF214:Predicted permease Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long%2C contain about 6 transmembrane regions and may be permeases%2C although there is no verification of this. subcellular location:integral membrane protein (potential). similarity:strong%2C to h.influenzae hi1703 2a69: Auxin Efflux Carrier TMHMM predicted 6 transmembrane helices%3B~Conserved hypothetical protein	gene	gene2952	http://www.ncbi.nlm.nih.gov/gene/?term=azo2902
azo2903	azo2903		azo2903	3185201	3186280	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. TREMBL:Q8XWQ7: 40%25 identity%3B 55%25 similarity: probable integral membrane protein InterPro:IPR005495%3B YjgP_YjgQ. Pfam:PF03739%3B YjgP_YjgQ :UbiA : UbiA prenyltransferase family Pfam:DUF112:Integral membrane protein DUF112 Signal peptide present (Signal P predicted). Transmembrane helices: 5 (TMHMM predicted).%3B~Conserved hypothetical protein	gene	gene2953	http://www.ncbi.nlm.nih.gov/gene/?term=azo2903
azo2904	azo2904	pepA	pepA	3186423	3187925	+	cytosol aminopeptidase	Cytosol aminopeptidases are zinc-dependent exopeptidases belonging to MEROPS peptidase family M17. They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing%2C catabolism and degradation of intracellular proteins. Similar to trembl|Q82X54 (53%25) and to sprot|AMPA_PSESM (56%25). Pfam (PF00883): Cytosol aminopeptidase SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene2954	http://www.ncbi.nlm.nih.gov/gene/?term=azo2904
azo2905	azo2905	holC	holC	3187931	3188368	+	DNA-directed DNA polymerase	Putative DNA polymerase III chi subunit%2C 40%25 Identity to TrEMBL%3B Q8XWQ9%2CQ63WC2%2CQ62LH1. Has PF04364%2C DNA polymerase III chi subunit%2C HolC%3BIPR007459%2C DNA_pol3_chi%3B The DNA polymerase III holoenzyme is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core%2C the sliding clamp%2C and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax%2C complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau)%2C but psi is insoluble unless it is in a complex with chi.	gene	gene2955	http://www.ncbi.nlm.nih.gov/gene/?term=azo2905
azo2906	azo2906		azo2906	3188383	3188892	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA7176 of Azoarcus sp. EbN1 of 44%25 (gnl|keqq|eba:ebA7176(KEGG)). no domains predicted. no signal peptide. no TMHs	gene	gene2956	http://www.ncbi.nlm.nih.gov/gene/?term=azo2906
azo2907	azo2907	valS	valS	3188987	3191983	+	ValS protein	Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS).%3B~High confidence in function and specificity	gene	gene2957	http://www.ncbi.nlm.nih.gov/gene/?term=azo2907
azo2908	azo2908		azo2908	3192016	3192657	-	putative TetR family transcriptional regulator	Putative TetR family transcriptional regulator%2C%3B~Family membership	gene	gene2958	http://www.ncbi.nlm.nih.gov/gene/?term=azo2908
azo2909	azo2909		azo2909	3192663	3193847	-	ABC transporter permease	Similar to TREMBL:Q82VH0 (64%25 identity)%3B TREMBL:Q9HTW0 (63%25 identity)%3B TREMBL:Q8FZX1 (64%25 identity). TMHMM predicting seven transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Specificity unclear	gene	gene2959	http://www.ncbi.nlm.nih.gov/gene/?term=azo2909
azo2910	azo2910		azo2910	3193878	3196646	-	ABC transporter permease and ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8FZX0 (58%25 identity)%3B TREMBL:Q8U6Y9 (59%25 identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003439): ABC transporter. Pfam (PF00005): ABC transporter. TMHMM predicting five transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~High confidence in function and specificity	gene	gene2960	http://www.ncbi.nlm.nih.gov/gene/?term=azo2910
azo2911	azo2911		azo2911	3196643	3197716	-	membrane fusion protein	HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q8ZLD9 (56%25 identity)%3B TREMBL:Q8VR08 (56%25 identity). Pfam (PF00529): HlyD family secretion protein. SignalP reporting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership	gene	gene2961	http://www.ncbi.nlm.nih.gov/gene/?term=azo2911
azo2912	azo2912	oprM3	oprM3	3197732	3199141	-	probable outer membrane efflux protein	Probable outer membrane efflux protein. Homology to oprM of P. aeruginosa of 47%25. Component of an efflux system that confers multidrug or multible antibiotic resistence. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHs%3B~Family membership	gene	gene2962	http://www.ncbi.nlm.nih.gov/gene/?term=azo2912
azo2913	azo2913	fimT	fimT	3199640	3200071	+	putative pre-pilin like protein	In P. aeruginosa fimT and fimU genes contain prepilin-like leader sequences. FimT plays probable a role in fimbrial biogenesis. Similar to trembl|Q87FA9 (30%25). Pfam (PF00114): Pilin (bacterial filament) TMHMM reporting one TMH. SignalP reporting Signal peptide.%3B~Function unclear	gene	gene2963	http://www.ncbi.nlm.nih.gov/gene/?term=azo2913
azo2914	azo2914	pilV	pilV	3200061	3200528	+	putative prepilin-like protein	In P. aeruginosa the genes pilV and pilE encode prepilin-like proteins involved in type 4 fimbrial biogenesis. Similar to trembl|Q8PJ74 (46%25). SignalP reporting Signal Peptide.%3B~Function unclear	gene	gene2964	http://www.ncbi.nlm.nih.gov/gene/?term=azo2914
azo2915	azo2915		azo2915	3200534	3201547	+	conserved hypothetical secreted protein	Conserved hypothetical protein	gene	gene2965	http://www.ncbi.nlm.nih.gov/gene/?term=azo2915
azo2916	azo2916	pilX	pilX	3201544	3202113	+	putative Tfp pilus assembly protein	In P. aeruginosa the PilW and PilX proteins are membrane located%2C possess the hydrophobic N-terminus characteristic of prepilin-like proteins%2C and appear to belong to the GspJ and GspK group of proteins that are required for protein secretion in a wide range of Gram-negative bacteria. These genes are involved in the assembly of type 4 fimbriae. Similar to trembl|Q8PJ76 (34%25). TMHMM reporting one TMH. SignalP reporting Signal peptide.%3B~Function unclear	gene	gene2966	http://www.ncbi.nlm.nih.gov/gene/?term=azo2916
azo2917	azo2917	pilY1B	pilY1B	3202121	3206329	+	putative Tfp pilus assembly protein	PilY1 is a large protein with C-terminal homology to the PilC2 protein of Neisseria gonorrhoeae%2C thought to be a fimbrial tip-associated adhesin%2C and which%2C like PilY1%2C is involved in fimbrial assembly. PilY1 appears to be located in both the membrane and the external fimbrial fractions. Similar to pir|H82802 (39%25). SignalP reporting Signal peptide%3B~Function unclear	gene	gene2967	http://www.ncbi.nlm.nih.gov/gene/?term=azo2917
azo2918	azo2918	pilE	pilE	3206332	3206736	+	putative prepilin like protein	In P. aeruginosa PilE is probable involved in pilus biogenesis and in twitching motility. Similar to trembl|Q82TX3 (50%25) and to pir|G82857 (43%25). Pfam (PF00114): Pilin (bacterial filament) SignalP reporting Signal peptide. TMHMM reporting one Tmhelix%3B~Function unclear	gene	gene2968	http://www.ncbi.nlm.nih.gov/gene/?term=azo2918
azo2919	azo2919		azo2919	3206799	3207029	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc0810 of R. solanacearum of 71%25 (trembl|Q8Y180). InterPro: Uncharacterized protein family UPF0033 (IPR001455). Pfam: Uncharacterized protein family UPF0033. no signal peptide. no TMH%3B~Family membership	gene	gene2969	http://www.ncbi.nlm.nih.gov/gene/?term=azo2919
azo2920	azo2920		azo2920	3207107	3208546	-	conserved hypothetical peptidase	Conserved hypothetical protein. Homology to cv0524 C. violaceum of 42%25 (trembl|Q7P0P2). Pfam: Peptidase family M48. signal peptide. no TMHs	gene	gene2970	http://www.ncbi.nlm.nih.gov/gene/?term=azo2920
azo2921	azo2921	moaC	moaC	3208627	3209139	+	molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C. Together with moaA is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z (By similarity). InterPro: MoaC family moaC: molybdenum cofactor biosynthesis protein C.%3B~High confidence in function and specificity	gene	gene2971	http://www.ncbi.nlm.nih.gov/gene/?term=azo2921
azo2922	azo2922		azo2922	3209384	3209602	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to orf11 of A. vinelandii of 63%25 (trembl|Q44537). no domains predicted. no signal peptide. no TMHs.	gene	gene2972	http://www.ncbi.nlm.nih.gov/gene/?term=azo2922
azo2923	azo2923	tupC	tupC	3209702	3210415	-	probable tungstate ATP-binding protein	Probable ATP-binding component of tungstate ABC transporter. Homology to tupC of E. acidaminophilum of 40%25 (tremble: Q93KD4). PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR tungstate. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. Pfam: ABC transporter Interpo: ABC-transporter (IPR003439)%2C AAA-ATPase (IPR003593)%2C ATP/GTP-binding site motif A (loopP) (IPR001687) no signal peptide no TMHS%3B~Family membership	gene	gene2973	http://www.ncbi.nlm.nih.gov/gene/?term=azo2923
azo2924	azo2924	tupB	tupB	3210426	3211130	-	probable tungstate permease protein	Probable tungstate permease protein. Homology to tupB of E. acidaminophilum of 40%25 (tremble: Q93KD5) Permase of an abc-transport system involved in transport of oxyanions. no signal peptide probable 5 TMHs%3B~Family membership	gene	gene2974	http://www.ncbi.nlm.nih.gov/gene/?term=azo2924
azo2925	azo2925		azo2925	3211273	3211878	+	hypothetical secreted protein	Hypothetical secredted protein. no homology of the entire protein to the data bank. no domains predicted signal peptide no TMHs	gene	gene2975	http://www.ncbi.nlm.nih.gov/gene/?term=azo2925
azo2926	azo2926		azo2926	3211901	3212554	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to orf of P.aeruginosa of 30%25 (ZP_00137401). No domains predicted. Signal peptide reported present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene2976	http://www.ncbi.nlm.nih.gov/gene/?term=azo2926
azo2927	azo2927		azo2927	3212572	3212877	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA5010 of Azoarcus sp. EbN1 of 40%25 (gnl|keqq|eba:ebA5010(KEGG)). no domains predicted. no signal peptide. no TMHs	gene	gene2977	http://www.ncbi.nlm.nih.gov/gene/?term=azo2927
azo2928	azo2928		azo2928	3212888	3213139	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Rgel02003612 of Rubrivivax gelatinosus PM1 of 51%25 (gi|47572157|ref|ZP_00242203.1|(NBCI ENTREZ)). Pfam: This family ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. This family of proteins have two conserved Glycines at the COOH terminus. MoaD%2C a protein involved sulphur transfer in molybdopterin synthesis%2C is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end. no signal peptide. no TMHs	gene	gene2978	http://www.ncbi.nlm.nih.gov/gene/?term=azo2928
azo2929	azo2929		azo2929	3213150	3214418	-	putative oxidoreductase	Putative oxidoreductase. Homology to narC of C. perfringens of 27%25 (trembl|Q9WX91) InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulfide oxidoreductase no signal peptide no TMHs purD: phosphoribosylamine--glycine lig%3B~Family membership	gene	gene2979	http://www.ncbi.nlm.nih.gov/gene/?term=azo2929
azo2930	azo2930	aorA	aorA	3214510	3216357	-	probable aldehyde ferredoxin oxidoreductase	Probable aldehyde ferredoxin oxidoreductase. Homology to aorA of E. acidodaminophilum of 47%25 (trembl|Q93KC8) InterPro: Aldehyde ferredoxin oxidoreductase (IPR001203) Pfam: Aldehyde ferredoxin oxidoreductase%2C N-terminus%3B Aldeyhde ferredoxin oxidoreductase%2C damains 2%263 no TMHs no signal peptide%3B~High confidence in function and specificity	gene	gene2980	http://www.ncbi.nlm.nih.gov/gene/?term=azo2930
azo2931	azo2931		azo2931	3216368	3216844	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to gsu0911 of G. sulfurreducens of 38%25 (tremblnew|AAR34238). Pfam: 4Fe-4S binding domain. no signal peptide. no TMHs	gene	gene2981	http://www.ncbi.nlm.nih.gov/gene/?term=azo2931
azo2932	azo2932		azo2932	3216979	3219003	-	Sigma-54 dependent transcriptional regulator	Similar to TREMBL:Q8XUQ7 (42%25 identity)%3B TREMBL:Q8PPN1 (40%25 identity)%3B SWISSPROT:P28614 (37%25 identity). Pfam (PF02954): Bacterial regulatory protein%2CFis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene2982	http://www.ncbi.nlm.nih.gov/gene/?term=azo2932
azo2933	azo2933	exaB1	exaB1	3219326	3219763	+	probable cytochrome c550	Probable cytochrome c550. Homology to exaB of P. aeruginosa of 57%25 (trembl|Q9Z4P8) Cytochrome c550 is an essential component of the quinoprotein ethanol oxidation system InterPro: Cytochrome c class I ((IPR003088) Pfam: Cytochrome c signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2983	http://www.ncbi.nlm.nih.gov/gene/?term=azo2933
azo2934	azo2934		azo2934	3219753	3220616	+	conserved hypothetical amino acid-binding protein	Conserved hypothetical amino acid-binding protein. Homology to pp2676 of P. putida of 34%25 (trembl|Q88JH3). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR amino acids. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638)%3B solute binding protein /glutamate receptor (IPR001311). Pfam: Bacterial extracellular solute-binding protein. singal peptide. no TMHs%3B~Specificity unclear	gene	gene2984	http://www.ncbi.nlm.nih.gov/gene/?term=azo2934
azo2935	azo2935		azo2935	3220743	3221693	+	conserved hypothetical protein	Conserved hypothetical protein TMHMM2 reporting the presence of 1 TMH's. No Signal peptide present. Has 2 WD40 repeats%3BSMART%3BSM00320%2C Beta-transducin (G-beta) is one of the three subunits (alpha%2C beta%2C and gamma) of the guanine nucleotide-binding proteins (G proteins) which act as intermediaries in the transduction of signals generated by transmembrane receptors (see IPR001632). The alpha subunit binds to and hydrolyzes GTP%3B the functions of the beta and gamma subunits are less clear but they seem to be required for the replacement of GDP by GTP as well as for membrane anchoring and receptor recognition.%3B~Function unclear	gene	gene2985	http://www.ncbi.nlm.nih.gov/gene/?term=azo2935
azo2936	azo2936		azo2936	3221690	3222226	+	conserved hypothetical cytochrome B561	Conserved hypothetical cytochrome B561. Homology to cv3278 of C. violaceum of 41%25. Involved in electronen transfer. no domains. no signal peptide. 4 TMHs%3B~Family membership	gene	gene2986	http://www.ncbi.nlm.nih.gov/gene/?term=azo2936
azo2937	azo2937	cyt1	cyt1	3222295	3222618	-	probable cytochrome c-552 precourser	Probable cytochrome c-552 precursor. Homology to cyt of N. europaea of 50%25 (sprot|C552_NITEU). ELECTRON DONOR FOR CYTOCHROME CD1 IN NITRITE AND NITRATE RESPIRATION. InterPro: Cytochrome c class I (IPR003088)%3B Cytochrome c%2C class ID (IPR002324)%3B cytochrome c%2C class IC (IPR008168) Pfam: cytochrome c signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene2987	http://www.ncbi.nlm.nih.gov/gene/?term=azo2937
azo2938	azo2938		azo2938	3222672	3223040	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to OB2533 of O.iheyensis of 64%25 (trembl:Q8ENF0). Has PF05610%2CProtein of unknown function (DUF779)%3BIPR008497%3BThis family consists of several bacterial proteins of unknown function. No signal peptide or TMH present.	gene	gene2988	http://www.ncbi.nlm.nih.gov/gene/?term=azo2938
azo2939	azo2939	aldA	aldA	3223255	3224775	-	aldehyde dehydrogenase (NAD+)	Aldehyde dehydrogenase (NAD+). Homology to aldA of X. autotrophicus of 76%25 (trembl|O50203). Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no TMHs%3B~High confidence in function and specificity	gene	gene2989	http://www.ncbi.nlm.nih.gov/gene/?term=azo2939
azo2940	azo2940		azo2940	3225116	3226705	+	Sigma-54 dependent transcriptional regulator	Similar to TREMBL:Q7P122 (29%25 identity)%3B TREMBL:Q87YQ3 (29%25 identity)%3B SWISSPROT:P28614 (28%25 identity). Pfam (PF00158): Sigma-54 interaction domain.%3B~Specificity unclear	gene	gene2990	http://www.ncbi.nlm.nih.gov/gene/?term=azo2940
azo2941	azo2941	zitB	zitB	3226773	3227456	-	putative zinc transport protein	Zinc transporter zitB (formaly ybgR).Involved in zinc efflux across the cytoplasmic membrane thus reducing zinc accumulation in the cytoplasm and rendering bacteria more resistant to zinc. It may contribute to zinc homeostasis at low concentrations of zinc (By similarity).The E.coli zitB gene encodes a Zn(II) transporter belonging to the cation diffusion facilitator family.%3B~High confidence in function and specificity	gene	gene2991	http://www.ncbi.nlm.nih.gov/gene/?term=azo2941
azo2942	azo2942		azo2942	3227685	3229697	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to PSPTO5055 of P.syringae of 36%25 (trembl:Q87V84). No domains predicted. No signal peptide or TMH reported present.	gene	gene2992	http://www.ncbi.nlm.nih.gov/gene/?term=azo2942
azo2943	azo2943		azo2943	3230033	3231325	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to PSPTO5054 of P.syringae of 35%25 (trembl:Q87V85). No domains predicted. No TMHs. No signal peptide.	gene	gene2993	http://www.ncbi.nlm.nih.gov/gene/?term=azo2943
azo2944	azo2944		azo2944	3231339	3231797	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ws0556 of W. succinogenes of 51%25 (trembl|Q7MSD6). Pfam: DUF411. The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance. signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene2994	http://www.ncbi.nlm.nih.gov/gene/?term=azo2944
azo2945	azo2945	copS	copS	3231842	3233239	-	two component sensor kinase	Two component sensor kinase%2C%3B~High confidence in function and specificity	gene	gene2995	http://www.ncbi.nlm.nih.gov/gene/?term=azo2945
azo2946	azo2946	copR	copR	3233236	3233916	-	two component response regulator	Transcriptional activator protein%2C%3B~High confidence in function and specificity	gene	gene2996	http://www.ncbi.nlm.nih.gov/gene/?term=azo2946
azo2947	azo2947		azo2947	3234103	3234528	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to pp5391 of P. putida of 31%25 (trembl|Q88BZ2). no domains predicted. signal peptide. no TMHs.%3B~Conserved hypothetical protein	gene	gene2997	http://www.ncbi.nlm.nih.gov/gene/?term=azo2947
azo2948	azo2948		azo2948	3234590	3234883	+	putative hydrolase	AAH:63279: 42%25 identity%2C 55%25 similarity Anti-oncogene%3B SH3 domain%3B Repeat%3B Description:SAM and SH3 domains containing protein 1 (proline-glutamate repeat-containing protein). Gene name(s) sash1 or pepe1 contains 1 SH3 domain. similarity: contains 2 sterile alpha motif (SAM) domains May have a role in a signaling pathway. Could act as a tumor supressor. InterPro: IPR001660%3B SAM. IPR001452: SH3. Pfam:PF00536%3B SAM%3B 2. PF00018:SH3%3B 1. SMART:SM00454%3B SAM%3B~Function unclear	gene	gene2998	http://www.ncbi.nlm.nih.gov/gene/?term=azo2948
azo2949	azo2949	czcC	czcC	3234880	3236301	+	putativemetal ion efflux outer membrane protein	Putative outer membrane efflux protein involved in cobalt-zinc-cadmium resistance (Cation efflux system protein czcC). Homology to czcC of R. eutropha of 24%25. czcC protein appears to modify the specificity of the system perhaps by acting on the czcB protein. When the czcC protein is added to czcA and czcB the efflux systems gained specificity for Cd(2+)and Co(2+) signal peptide no TMHs%3B~Family membership	gene	gene2999	http://www.ncbi.nlm.nih.gov/gene/?term=azo2949
azo2950	azo2950		azo2950	3236323	3237729	+	multicopper oxidase	Multicopper oxidases are enzymes that possess three spectroscopically differentcopper centers. Similar to TREMBL:Q7X4G1 (71%25 identity)%3B TREMBL:Q8U8U7 (71%25 identity)%3B TREMBL:Q92ZC7 (70%25 identity). InterPro (IPR001117): Multicopper oxidase type 1. Pfam (PF00394): Multicopper oxidase. SignalP reporting signal peptide.%3B~Function unclear	gene	gene3000	http://www.ncbi.nlm.nih.gov/gene/?term=azo2950
azo2951	azo2951		azo2951	3237804	3238304	+	putative copper tolerance protein	CopC: copper tolerance protein.CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA%2C CopC mediates copper resistance by sequestration of copper in the periplasm. 43%25 Cu-oxidase. InterPro:IPR008972%3B Cupredoxin. Signal pepetide:present. TMhelix:1.%3B~Function unclear	gene	gene3001	http://www.ncbi.nlm.nih.gov/gene/?term=azo2951
azo2952	azo2952		azo2952	3238418	3238759	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to SMc02284 of S. meliloti of 38%25 (trembl|Q92S41(SRS)). Has PF07076:IPR009780%3BProtein of unknown function (DUF1344):This family consists of several short%2Chypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium%2CAgrobacterium and Brucella species. The function of this family is unknown. Signal peptide predicted. No TMHs%3B~Conserved hypothetical protein	gene	gene3002	http://www.ncbi.nlm.nih.gov/gene/?term=azo2952
azo2953	azo2953		azo2953	3238999	3240282	+	conserved hypothetical outer membrane efflux protein	Conserved hypothetical outer membrane efflux. Homology to ebA2169 Azoarcus sp. EbN1 of 68%25 (gnl|keqq|eba:ebA2169(KEGG)). Pfam: Outer membrane efflux protein. signal peptide. probable 1 TMH in signal peptide.%3B~Conserved hypothetical protein	gene	gene3003	http://www.ncbi.nlm.nih.gov/gene/?term=azo2953
azo2954	azo2954	cusB	cusB	3240279	3241874	+	cation efflux transmembrane protein	Putative membrane fusion protein silB precursor. COMPONENT OF THE SIL CATION-EFFLUX SYSTEM THAT CONFERS RESISTANCE TO SILVER. MAY BE PART OF A THREE-COMPONENT CATION/PROTON ANTIPORTER.%3B~High confidence in function and specificity	gene	gene3004	http://www.ncbi.nlm.nih.gov/gene/?term=azo2954
azo2955	azo2955		azo2955	3242221	3246132	+	putative cation efflux system protein	Region start changed from 3242195 to 3242423 (-228 bases)	gene	gene3005	http://www.ncbi.nlm.nih.gov/gene/?term=azo2955
azo2956	azo2956		azo2956	3246273	3248684	+	putative cooper-transporting ATPase protein	Similar to E.coli CopA: copper transporting P-type ATPase protein%2C involved in the uptake and metabolism of copper(EC 3.6.3.4).Involved in copper transport(By similarity). Putative cation transporting P-type ATPase (EC 3.6.3.-).%3B~High confidence in function and specificity	gene	gene3006	http://www.ncbi.nlm.nih.gov/gene/?term=azo2956
azo2957	azo2957		azo2957	3248752	3249315	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs. HTH predicted	gene	gene3007	http://www.ncbi.nlm.nih.gov/gene/?term=azo2957
azo2958	azo2958		azo2958	3249338	3249823	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene3008	http://www.ncbi.nlm.nih.gov/gene/?term=azo2958
azo2959	azo2959		azo2959	3250037	3250312	+	4-carboxymuconolactone decarboxylase	Carboxymuconolactone decarboxylase family protein%2C33%25 identity to TrEMBL%3BQ88K69. Has PF02627%2CCarboxymuconolactone decarboxylase family%3B Carboxymuconolactone decarboxylase (CMD)is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins (e.g. O67982) CMD represents the C-terminal domain%2CAbhydrolase_1 represents the N-terminal domain.%3B~Function unclear	gene	gene3009	http://www.ncbi.nlm.nih.gov/gene/?term=azo2959
azo2960	azo2960		azo2960	3250526	3251743	+	conserved hypothetical transporter	27%25 similarity to Hypothetical protein ycxA (ORF5)of Bacillus subtilis. 12 predicted transmembrane helices with signal peptide. 54%25 identity%2C 69%25 similarity to Pseudomonas putida membrane protein. InterPro: General substrate transporters 2A0111: Oxalate/Formate Antiporter%3B~Function unclear	gene	gene3010	http://www.ncbi.nlm.nih.gov/gene/?term=azo2960
azo2961	azo2961		azo2961	3251743	3251892	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Has Signal peptide	gene	gene3011	http://www.ncbi.nlm.nih.gov/gene/?term=azo2961
azo2962	azo2962	sigZ	sigZ	3251919	3252485	+	putative RNA polymerase sigma factor SigZ	Putative RNA polymerase sigma factor sigZ. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Similar to SWISSPROT: sprot|SIGZ_BACSU (23%25 Bacillus subtilis%2C RNA polymerase sigma factor SigZ) / sprot|RPSH_PSEAE (28%25 Pseudomonas aeruginosa%2C RNA polymerase sigma-h factor (sigma-30)%2C AlgU or AlgT) InterPro: IPR000838 Sigma70_ECF. Pfam: PF07638 ECF sigma factor.%3B~High confidence in function and specificity	gene	gene3012	http://www.ncbi.nlm.nih.gov/gene/?term=azo2962
azo2963	azo2963	chrA	chrA	3252493	3253860	-	putative chromate transport protein	Probable chromate transport protein.This protein reduces chromate accumulation and is essential for chromate resistance.Integral membrane protein.Induced by chromate. 27%25 Chromate_transpt. Pfam:PF02417%3B Chromate_transp%3B 2. TIGRFAMs:TIGR00937%3B 2A51%3B 1. TMHelix: 11. InterPro: Chromat transporter 2A51: Chromate Ion Transporter%3B~High confidence in function and specificity	gene	gene3013	http://www.ncbi.nlm.nih.gov/gene/?term=azo2963
azo2964	azo2964	chrB	chrB	3253862	3254782	-	probable Chromate resistance signal peptide protein	Probable Chromate resistance signal peptide protein%2C 49%25 Identity to TrEMBL%3B Q7NZK1%2C Q8XSC4. Has Signal Pepride.	gene	gene3014	http://www.ncbi.nlm.nih.gov/gene/?term=azo2964
azo2965	azo2965		azo2965	3254885	3255571	-	conserved hypothetical protein	Protein yhhW. SPROT:P46852: 51%25 identity%2C 69%25 similarity entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body InterPro%3B IPR007113%3B Cupin_sup. InterPro%3B IPR003829%3B Pirin_N. Pfam%3B PF02678%3B Pirin%3B TIGR00292: thiazole biosynthesis enzyme Absence of transmembrane helices (TMHMM predicted).%3B~Function unclear	gene	gene3015	http://www.ncbi.nlm.nih.gov/gene/?term=azo2965
azo2966	azo2966		azo2966	3255634	3256128	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to VPA0043 of Vibrio parahaemolyticus of 64%25 (trembl|Q87K55). Pfam: TQO small subunit DoxD. DoxD is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens%2C with calculated molecular mass of 20.4 kDa. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene3016	http://www.ncbi.nlm.nih.gov/gene/?term=azo2966
azo2967	azo2967	hupR	hupR	3256251	3257171	+	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~Family membership	gene	gene3017	http://www.ncbi.nlm.nih.gov/gene/?term=azo2967
azo2968	azo2968	wrbA1	wrbA1	3257288	3257887	+	probable trp repressor binding protein (flavodoxin)	SPROT:Q92PU3: 71%25 identity%3B 82%25 similarity Flavoprotein wrbA1. cofactor:binds 1 fmn per monomer (by similarity). similarity:belongs to the wrba family%3B contains 1 flavodoxin-like domain. InterPro:IPR008254%3B Flav_nitox_synth. IPR001226%3B Flavodoxin. Pfam: PF00258%3B flavodoxin%3B 1. Absence of signal peptide (Signal P predicted) and transmembrane helices (TMHMM predicted) met_pdase_I: methionine aminopeptidase t%3B~High confidence in function and specificity	gene	gene3018	http://www.ncbi.nlm.nih.gov/gene/?term=azo2968
azo2969	azo2969		azo2969	3258728	3259585	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA582 of Azoarcus sp. EbN1 of 37%25 (gnl|keqq|eba:ebA582(KEGG)). No domains predicted. Signal P reporting signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene3019	http://www.ncbi.nlm.nih.gov/gene/?term=azo2969
azo2970	azo2970	uvrY	uvrY	3259643	3260290	-	probable two-component response regulator	Probable two-component response regulator%2C%3B~Family membership	gene	gene3020	http://www.ncbi.nlm.nih.gov/gene/?term=azo2970
azo2971	azo2971		azo2971	3260287	3261633	-	putative two-component sensor histidine kinase	Putative two-component sensor histidine kinase%2Conly very low similarity to SWISSPROT: sprot|DEGS_BACBR (13%25 Bacillus brevis%2C DegS) InterPro: IPR003661 His_kinA_N. Pfam: PF00672 HAMP domain. PF02518 Histidine kinase-%2C DNA gyrase B-%2C phytochrome-like ATPase TMHMM reporting 2 transmembrane helices. Sensor protein degS (EC 2.7.3.-). INVOLVED IN A SENSORY TRANSDUCTION PATHWAY THAT AFFECT THE PRODUCTION OF ENZYMES THAT DEGRADE POLYMERIC CARBON AND NITROGEN SOURCES. DEGS PROBABLY ACTS AS A KINASE THAT PHOSPHORYLATES DEGU.%3B~Function unclear	gene	gene3021	http://www.ncbi.nlm.nih.gov/gene/?term=azo2971
azo2972	azo2972	exaA2	exaA2	3261821	3263698	+	ExaA2 protein	Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 73%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present.%3B~High confidence in function and specificity	gene	gene3022	http://www.ncbi.nlm.nih.gov/gene/?term=azo2972
azo2973	azo2973		azo2973	3263828	3264388	+	pentapeptide repeat family protein	Pentapeptide repeat family protein%2C 36%25 identity(46%25 similarity) to TrEMBL%3BQ88JH6. Signal P reporting Signal Peptide present. Has 3 copies of PF00805%2CPentapeptide repeats%3BIPR001646%2C 5peptide_repeat%3BThese repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix . The repeat can be approximately described as A(D/N)LXX%2C where X can be any amino acid.%3B~Conserved hypothetical protein	gene	gene3023	http://www.ncbi.nlm.nih.gov/gene/?term=azo2973
azo2974	azo2974	exaB2	exaB2	3264394	3264876	+	putative cytochrome c550	Putative cytochrome c550. Homology to exaB of P. aeruginosa of 37%25 (trembl|Q9Z4P8). Cytochrome c550 is an essential component of the quinoprotein ethanol oxidation. InterPro: Cytochrome c class I (IPR003088) Pfam: cytochrome c signal peptide no TMHs%3B~Function unclear	gene	gene3024	http://www.ncbi.nlm.nih.gov/gene/?term=azo2974
azo2975	azo2975	exaA3	exaA3	3265163	3266950	-	putative quinoprotein ethanol dehydrogenase	Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 53%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present. TMhelix:1%3B~High confidence in function and specificity	gene	gene3025	http://www.ncbi.nlm.nih.gov/gene/?term=azo2975
azo2976	azo2976		azo2976	3267279	3268091	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PP2677 of P. putida of 35%25 (trembl|Q88JH2(SRS)). No domains predicted. Signal peptide present. No TMH detected.%3B~Conserved hypothetical protein	gene	gene3026	http://www.ncbi.nlm.nih.gov/gene/?term=azo2976
azo2977	azo2977	cphA	cphA	3268088	3269080	+	putative beta lactamase precursor	Conserved Hypothetical protein (pir:H95862%3B 47%25 identity )%2C putative hydrolase (TREMBL: Q88JH1%3B 54%25 identity%2C 66%25 similarity) putative cyclase (TREMBL: Q93IZ0) putative alkylsufatase/betalactamase (rba:RB11502) Metallo beta lactamase superfamily (Pfam) Signal P%3B TMHMM reporting transmembrane helices S18: ribosomal protein S18%3B~High confidence in function and specificity	gene	gene3027	http://www.ncbi.nlm.nih.gov/gene/?term=azo2977
azo2978	azo2978		azo2978	3269103	3271517	+	putative TonB-dependent receptor	Similar to FepA%2C an iron regulated outer membrane protein. FepA is a receptor for the siderophore complex ferric enterobactin and for colcins B and D. INVOLVED IN THE INITIAL STEP OF IRON UPTAKE BY BINDING FERRIC ENTEROBACTIN THAT ALLOWS E. COLI TO EXTRACT IRON FROM THE ENVIRONMENT. Probable tonB-dependent receptor yncD precursor. InterPro: TonB-dependent receptor protein.%3B~High confidence in function and specificity	gene	gene3028	http://www.ncbi.nlm.nih.gov/gene/?term=azo2978
azo2979	azo2979	elmS	elmS	3271523	3272992	+	putative two-component sensor histidine kinase	Putative two-component sensor histidine kinase%2C%3B~Specificity unclear	gene	gene3029	http://www.ncbi.nlm.nih.gov/gene/?term=azo2979
azo2980	azo2980	gacA	gacA	3273206	3273850	+	probable transcriptional regulator%2C LuxR family	Probable transcriptional regulator%2C LuxR family%2C%3B~Specificity unclear	gene	gene3030	http://www.ncbi.nlm.nih.gov/gene/?term=azo2980
azo2981	azo2981		azo2981	3274283	3276310	+	putative methyl-accepting chemotaxis protein	Putative methyl-accepting chemotaxis protein%2C%3B~Conserved hypothetical protein	gene	gene3031	http://www.ncbi.nlm.nih.gov/gene/?term=azo2981
azo2982	azo2982		azo2982	3276637	3276912	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of M. magnetotacticum of 33%25 (ZP_00053175). No domains predicted. No TMHs. No signal peptide	gene	gene3032	http://www.ncbi.nlm.nih.gov/gene/?term=azo2982
azo2983	azo2983		azo2983	3277196	3278320	-	putative Transposase	Putative Transposase%2C38%25 identity(55%25 similarity)to TrEMBL%3BQ877R1%2C Putative receptor protein (Transposase) [BT1893] [Bacteroides thetaiotaomicron VPI-5482]. Has PF01609:Transposase DDE domain%3BTransposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily%2C which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4 P03835%2C IS421 P11901%2C IS5377 Q45620%2C IS427 %2C IS402%2C IS1355 O69604%2C IS5%2Cwhich was original isolated in bacteriophage lambda. IPR002559:Transposase_11. GO:0004872%3BMolecular function: receptor activity. Signal peptide present. NO TMH reported present.%3B~Family membership	gene	gene3033	http://www.ncbi.nlm.nih.gov/gene/?term=azo2983
azo2984	azo2984		azo2984	3278702	3279538	+	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. Pfam: DUF1555. signal peptide. TMH in signal peptide	gene	gene3034	http://www.ncbi.nlm.nih.gov/gene/?term=azo2984
azo2985	azo2985	tnkS	tnkS	3279788	3280681	+	putative tankyrase type protein	Tankyrase 2 (EC 2.4.2.30) (TANK2) (Tankyrase II) (TNKS-2) (TRF1- interacting ankyrin-related ADP-ribose polymerase 2) (Tankyrase-like protein) (Tankyrase-related protein). May regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles. Has PARP activity and can modify TRF1 and thereby contribute to the regulation of telomere length. TREMBL:Q800E0:34%25%3B Q8YTG9:36%25 identity. InterPro: Ankyrin-repeat Mop: molybdenum-pterin binding domain Presence of signal peptide (SignalP) but absence of transmembrane helices%3B~Function unclear	gene	gene3035	http://www.ncbi.nlm.nih.gov/gene/?term=azo2985
azo2986	azo2986		azo2986	3280842	3281492	-	putative methyltransferase	Similar to TREMBL:Q82SQ0 (50%25 identity %2C67%25 similarity).%3B~Function unclear	gene	gene3036	http://www.ncbi.nlm.nih.gov/gene/?term=azo2986
azo2987	azo2987		azo2987	3281489	3282034	-	dihydrofolate reductase%2C putative	Putative Dihydrofolate reductase.%3B~Function unclear	gene	gene3037	http://www.ncbi.nlm.nih.gov/gene/?term=azo2987
azo2988	azo2988	chrR	chrR	3282330	3282890	-	probable chromate reductase	Probable chromate reductase. Homology to chrR of E. coli of 49%25 (tremblnew|AAK62985). Reduction of chromate (Cr(VI)) to Cr(III).no no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3038	http://www.ncbi.nlm.nih.gov/gene/?term=azo2988
azo2989	azo2989	katG	katG	3283201	3285402	+	putative catalase/peroxidase	Peroxidase/catalase (EC 1.11.1.6). Bifunctional exhibiting both a catalase and broad- spectrum peroxidase activities.Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions.Bacterial catalase-peroxidases are approximately twice the size of plant and fungal haem peroxidases. Sequence analysis suggests that this doubling in length can be ascribed to gene duplication%2C whereby each half is%3B~High confidence in function and specificity	gene	gene3039	http://www.ncbi.nlm.nih.gov/gene/?term=azo2989
azo2990	azo2990		azo2990	3285452	3286078	-	putative isochorismatase	Similar to TREMBL:Q88PY7 (90%25 identity)%3B SWISSPROT:P21367 (87%25 identity)%3B TREMBL:Q7W0U0 (85%25 identity). InterPro (IPR000868): Isochorismatase hydrolase. Pfam (PF00857): Isochorismatase family.%3B~Specificity unclear	gene	gene3040	http://www.ncbi.nlm.nih.gov/gene/?term=azo2990
azo2991	azo2991		azo2991	3286186	3287082	-	conserved hypothetical protein	Hypothetical protein PA2418. Pirin related protein of unknown function. TREMBL:Q7VUX8: 69%25 identity%2C 81%25 similarity. InterPro:IPR008778%3B Pirin_C. IPR003829%3B Pirin_N. Pfam: PF02678%3B Pirin%3B 1. PF05726%3B Pirin_C InterPro: DUF209 No signal peptide present (Signal P predicted). No transmembrane helices present (TMHMM predicted). hypD: hydrogenase expression/formation pr%3B~Specificity unclear	gene	gene3041	http://www.ncbi.nlm.nih.gov/gene/?term=azo2991
azo2992	azo2992		azo2992	3287206	3288111	+	probable transcriptional regulator%2C LysR family	Probable transcriptional regulator%2C LysR family%2C%3B~Family membership	gene	gene3042	http://www.ncbi.nlm.nih.gov/gene/?term=azo2992
azo2993	azo2993		azo2993	3288180	3288830	+	DNA-binding protein	DNA-binding protein or Dihydrofolat-Reductase ???%3B~Function unclear	gene	gene3043	http://www.ncbi.nlm.nih.gov/gene/?term=azo2993
azo2994	azo2994	fpvA2	fpvA2	3288843	3291056	-	probable TonB-dependent receptor	Iron-regulated outer membrane protein. TonB-dependent receptor protein. Homolog to fpvA%2C a ferripyoverdine receptor precursor in P. aeruginosa. Similar to PupA protein of P. putida WCS%2Cthis protein is a receptor for the iron-bound form of pesudobactin%2C a compound structurally very%3B~High confidence in function and specificity	gene	gene3044	http://www.ncbi.nlm.nih.gov/gene/?term=azo2994
azo2995	azo2995		azo2995	3291403	3291858	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to IL2513 of Idiomarina loihiensis of 37%25 (gnl|keqq|ilo:IL2513(KEGG)). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene3045	http://www.ncbi.nlm.nih.gov/gene/?term=azo2995
azo2996	azo2996		azo2996	3291855	3293027	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA2403 of Pseudomonas aeruginosa of 38%25 (trembl|Q8G8F6). Has 3 copies of PF03929%2C PepSY-associated TM helix%3BIPR005625 pEPsy_tm%3B This domain represents a conserved TM helix found in bacterial proteins. Has PF03413%2C Peptidase propeptide and YPEB domain%3B IPR005075%2CPropep_PepSY:This region is likely to have an protease inhibitory function (personal obs:C Yeats). This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase %26 Bacillus subtilis YPEB. no signal peptide. 4TMHs%3B~Conserved hypothetical protein	gene	gene3046	http://www.ncbi.nlm.nih.gov/gene/?term=azo2996
azo2997	azo2997	fhuF	fhuF	3293030	3295177	-	putative TonB-dependent receptor	Ferrioxamine B receptor precursor%2C FhuF. Iron-regulated outer membrane protein that bind and uptake ferrioxamine in association with the TonB protein. Involved in the reduction of ferric iron in cytoplasmic ferrioxamine B. Binds 1 2Fe-2S cluster. In e.coli the fhuF gene reacts very sensitive to minor changes of Fe2+ and Fur(Ferric uptake regulator). SWISSPROT: FOXA_SALTY. Prim. accession #:Q56145 EMBL: AE008712%3B AAL19318.1%3B AF060876%3B AAC15464.1%3B U62282%3B AAB04552.1%3B InterPro:IPR000531%3B TonB_boxC. Pfam: PF00593%3B TonB_dep_Rec%3B 1. PROSITE: PS00430%3B TONB_DEPENDENT_REC_1%3B FALSE_NEG. PS01156%3B TONB_DEPENDENT_REC_2%3B FALSE_NEG.%3B~High confidence in function and specificity	gene	gene3047	http://www.ncbi.nlm.nih.gov/gene/?term=azo2997
azo2998	azo2998		azo2998	3295639	3296769	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. InterPro: Esterase/lipase/thioesterase family active site (IPR000379)%2C GCN5-realted N-actetyltransferase (IPR000182). no signal peptide. no TMHs	gene	gene3048	http://www.ncbi.nlm.nih.gov/gene/?term=azo2998
azo2999	azo2999		azo2999	3296777	3297358	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to NE2572 of N.europaea of 46%25 (tremble:Q82RZ3). Has PF05951%2C Bacterial protein of unknown function (DUF882)%3BIPR010275%3B This family consists of a series of hypothetical bacterial proteins of unknown function. Signal Peptide Present. No TMH present.%3B~Conserved hypothetical protein	gene	gene3049	http://www.ncbi.nlm.nih.gov/gene/?term=azo2999
azo3000	azo3000	ycbB	ycbB	3297392	3299023	-	putative periplasmic protein	Putative periplasmic protein [ycbB]%2C 39%25 identity(57%25 similarity) to TrEMBL%3BQ82RZ2.Q9A853(30%25 identity) Signal Peptide Present. Has PF01471%2C Putative peptidoglycan binding domain%3B IPR002477 PG_binding%3B This domain%2C peptidoglycan binding domain 1%2C may have a general peptidoglycan binding function. It is composed of three helices and is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. * Muramoyl-pentapeptide carboxypeptidase (EC:3.4.17.8) * N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall) hydrolase%2C autolysin%2C EC:3.5.1.28) * Autolytic lysozyme (1%2C4--N-acetylmuramidase%2C autolysin%2C EC:3.2.1.17) * Membrane-bound lytic murein transglycosylase B%3B~Family membership	gene	gene3050	http://www.ncbi.nlm.nih.gov/gene/?term=azo3000
azo3001	azo3001		azo3001	3299083	3300033	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to XAC149 of X. axonopodis of 41%25 (trembl|Q8PLP4(SRS)). Pfam: DedA family. This family combines the DedA related proteins and YIAN/YGIK family. Members of this family are not functionally characterised. These proteins contain multiple predicted transmembrane regions. no signal peptide. 4 TMHs.%3B~Conserved hypothetical protein	gene	gene3051	http://www.ncbi.nlm.nih.gov/gene/?term=azo3001
azo3002	azo3002	hutG	hutG	3300159	3300980	-	conserved hypothetical formylglutamte amindohyrolase	Conserved hypothetical formylglutamte amindohyrolase. Homology to hutG of B. bronchiseptica of 53%25 (trembl|Q7WEA2). Catalyses the terminal reaction in the five-step pathway for histidine utilisation. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3052	http://www.ncbi.nlm.nih.gov/gene/?term=azo3002
azo3003	azo3003		azo3003	3300977	3302122	-	conserved hypothetical transcriptional regulator%2C LysR family	Conserved hypothetical transcriptional regulator%2CLysR family. Similar to SWISSPROT: sprot|NTCB_SYNP7 (18%25 Synechococcus sp. (strain PCC 7942) (Anacystis nidulans R2)%2C nitrogen assimilation transcriptional activator NtcB) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~Family membership	gene	gene3053	http://www.ncbi.nlm.nih.gov/gene/?term=azo3003
azo3004	azo3004	soxB	soxB	3302210	3303394	+	putative sarcosine oxidase%2C subunit beta	Sarcosine oxidase%2C subunit beta counts to the FAD dependent oxidoreductases. Similar to trembl|Q82M71 (29%25) and to trembl|Q9V0K7 (26%25). Pfam (PF01266): D-amino acid oxidase ProSite (PS50205): NAD binding site ProSite (PS50204): UBA/THIF-type NAD/FAD binding fold%3B~Specificity unclear	gene	gene3054	http://www.ncbi.nlm.nih.gov/gene/?term=azo3004
azo3005	azo3005	etfB4	etfB4	3303449	3304201	+	probable electron transfer flavoprotein%2C beta subunit	Probable electron transfer flavoprotein%2C beta subunit. Homology to etfB of B. japonicum of 54%25 (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein beta-subunit (IPR000049) Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS%3B~High confidence in function and specificity	gene	gene3055	http://www.ncbi.nlm.nih.gov/gene/?term=azo3005
azo3006	azo3006	etfA4	etfA4	3304218	3305165	+	probable electron transfer flavoprotein%2C alpha subunit	Probable electron transfer flavoprotein%2C alpha subunit. Homology to etfA of B. japonicum of 49%25 (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3056	http://www.ncbi.nlm.nih.gov/gene/?term=azo3006
azo3007	azo3007		azo3007	3305177	3305785	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to BB1278 of B.bronchiseptica of 35%25 (trembl:Q7WMW2). Has PF05962%2CBacterial protein of unknown function (DUF886)%3BIPR010282%3B This family consists of several hypothetical bacterial proteins of unknown function. No signal peptide or TMH present.	gene	gene3057	http://www.ncbi.nlm.nih.gov/gene/?term=azo3007
azo3008	azo3008	etf2	etf2	3305802	3307487	+	probable electron transfer flavoprotein-ubiquinone oxidoreductase	Probable electron transfer flavoprotein-ubiquinone oxidoreductase. Homology to etfdh of H. sapiens of 53%25 (sprot|ETFD_HUMAN) Accepts electrons and reduces ubiquinone. Pfam: FAD_binding_3%3B ETF_QO no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3058	http://www.ncbi.nlm.nih.gov/gene/?term=azo3008
azo3009	azo3009		azo3009	3307684	3308286	-	putative DNA binding helix-turn helix protein	Putative DNA binding helix-turn helix protein%2C%3B~Family membership	gene	gene3059	http://www.ncbi.nlm.nih.gov/gene/?term=azo3009
azo3010	azo3010	glnT	glnT	3308451	3309848	+	glutamine synthetase III	Glutamine synthetase III plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. Similar to trembl|Q98A06 (58%25) and to sprot|GLN3_RHILP (38%25). Pfam (PF03951): Glutamine synthetase%2C beta-Grasp domain Pfam(PF00120): Glutamine synthetase%2C catalytic domain%3B~High confidence in function and specificity	gene	gene3060	http://www.ncbi.nlm.nih.gov/gene/?term=azo3010
azo3011	azo3011	glxB	glxB	3309864	3310772	+	amido phosphoribosyltransferase	Glutamine amidotransferase%2C class-II protein%2C glxB (purF). Similar to sprot|GLXB_RHIME (46%25) and to trembl|Q882P3 (49%25). Glutamine amidotransferase catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase). On the basis of sequence similarities two classes of GATase domains have been identified class-I and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase%2C which catalyses the first step in purine biosynthesis. InterPro (PF00310): Glutamine amidotransferase class-II%3B~High confidence in function and specificity	gene	gene3061	http://www.ncbi.nlm.nih.gov/gene/?term=azo3011
azo3012	azo3012	glxC	glxC	3310760	3311452	+	probable protein GlxC	Probable protein GlxC. Similar to sprot|GLXC_RHIME (59%25) and to pir|A96211 (51%25). Pfam (PF01493): GXGXG%3B~Family membership	gene	gene3062	http://www.ncbi.nlm.nih.gov/gene/?term=azo3012
azo3013	azo3013	glxD	glxD	3311454	3312797	+	glutamate synthase%2C large subunit	Glutamate synthase%2C large subunit. Similar to sprot|GLXD_RHIME (87%25). Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia%2C a reaction in the bacterial%2C yeast and plant pathways for ammonia assimilation. Pfam: Conserved region in glutamate synthase%3B~Specificity unclear	gene	gene3063	http://www.ncbi.nlm.nih.gov/gene/?term=azo3013
azo3014	azo3014	glnY	glnY	3312866	3313204	+	PII-like signal transmitter protein GlnY	PII-like signal transmitter proteins are involved in the regulation of ammonium assimilation and nitrogen fixation. The PII-like proteins differed from each other in details of N-sensing. They were covalently modified by uridylylation upon nitrogen limitation. Similar to trembl|Q9EZQ4 (100%25) and to trembl|Q9RBK0 (78%25). Pfam: Nitrogen regulatory protein P-II%3B~High confidence in function and specificity	gene	gene3064	http://www.ncbi.nlm.nih.gov/gene/?term=azo3014
azo3015	azo3015	amtY	amtY	3313222	3314586	+	ammonium transporter	Ammonium transporter 1 member 2 (LeAMT1%3B2). Involved in high affinity ammonium uptake. TREMBL:Q8RP88: 100%25 identity (published) InterPro: IPR001905%3B Ammonium_transpt. IPR010256%3B RH_like_transpt. Pfam: PF00909%3B Ammonium_transp amt: ammonium transporter SignalP predicted signal peptide (probability 0.999) TMHMM predicted 11 transmembrane helices%3B~High confidence in function and specificity	gene	gene3065	http://www.ncbi.nlm.nih.gov/gene/?term=azo3015
azo3016	azo3016		azo3016	3314644	3315441	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ECA3203 of Erwinia carotovora of 58%25 (tremble:Q6D293). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene3066	http://www.ncbi.nlm.nih.gov/gene/?term=azo3016
azo3017	azo3017		azo3017	3315684	3316808	-	outer membrane porin protein precursor	Outer membrane porin protein 32 precursor (OMP32). Forms anion selective channels.%3B~Specificity unclear	gene	gene3067	http://www.ncbi.nlm.nih.gov/gene/?term=azo3017
azo3018	azo3018		azo3018	3316976	3317098	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted .no signal peptide. no TMHs	gene	gene3068	http://www.ncbi.nlm.nih.gov/gene/?term=azo3018
azo3019	azo3019		azo3019	3317346	3318281	+	putative AraC-like transcriptional regulator	Putative AraC family%2Ctranscriptional regulator%2C 28%25 Identity to TrEMBL%3BQ62GH5%2CQ6QEJ0%2CQ9HWT4 Has SMART%3BSM00342%2CHTH_ARAC%2C helix_turn_helix%2C arabinose operon control protein%3BIPR000005%3B Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' (HTH) motif. One major subfamily of these proteins is related to the arabinose operon regulatory protein AraC. Except for celD all of these proteins seem to be positive transcriptional factors.Although the sequences belonging to this family differ somewhat in length%2C in nearly every case the HTH motif is situated towards the C-terminus in the third quarter of most of the sequences. The minimal DNA binding domain spans roughly 100 residues and comprises two HTH subdomains%3B the classical HTH domain and another HTH subdomain with similarity to the classical HTH domain but with an insertion of one residue in the turn-region. The N-terminal and central regions of these proteins are presumed to interact with effector molecules and may be involved in dimerization.%3B~Conserved hypothetical protein	gene	gene3069	http://www.ncbi.nlm.nih.gov/gene/?term=azo3019
azo3020	azo3020		azo3020	3318463	3319443	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to aciad2673 of Acinetobacter sp. of 53%25 (trembl|Q6F937). no domains reported. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3070	http://www.ncbi.nlm.nih.gov/gene/?term=azo3020
azo3021	azo3021	thmS2	thmS2	3319525	3320985	+	probable succinate semialdehyde dehydrogenase [NAD(P)+]	Probable succinate semialdehyde dehydrogenase [NAD(P)+]. Homology to thmS of Pseudonocardia sp. K1 of 46%25 (trembl|Q9F3V7). Is capable of oxidizing substrates using NADP as cofactor. Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~Family membership	gene	gene3071	http://www.ncbi.nlm.nih.gov/gene/?term=azo3021
azo3022	azo3022	exaA4	exaA4	3321256	3323430	+	putative quinoprotein ethanol dehydrogenase	Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 37%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present.%3B~High confidence in function and specificity	gene	gene3072	http://www.ncbi.nlm.nih.gov/gene/?term=azo3022
azo3023	azo3023		azo3023	3323986	3326103	+	probable TonB-dependent receptor	Probable outer membrane receptor TonB-dependent for iron transport. 41%25 AAC74533.1 InterPro: IPR000531 TonB_receptor.IPR010105%3B TonB_siderophor. Pfam: PF00593%3B TonB_dep_Rec%3B 1. TonB-box domain%3B~High confidence in function and specificity	gene	gene3073	http://www.ncbi.nlm.nih.gov/gene/?term=azo3023
azo3024	azo3024		azo3024	3326109	3326648	+	hypothetical secreted protein	Hypotheical secreted protein. No homology of the entire protein to the data bank. no domains predicted. no TMHs. signal peptide.	gene	gene3074	http://www.ncbi.nlm.nih.gov/gene/?term=azo3024
azo3025	azo3025		azo3025	3326814	3327098	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ra0176 of S. meliloti of 31%25 (trembl|Q930L9). Pfam: Uncharacterized ACR%2C YneC family. no signal peptide. no TMHS	gene	gene3075	http://www.ncbi.nlm.nih.gov/gene/?term=azo3025
azo3026	azo3026		azo3026	3327420	3329078	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Reut02004453 of Ralstonia metallidurans of 38%25 (gi|48768314|ref|ZP_00272664.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs.%3B~Conserved hypothetical protein	gene	gene3076	http://www.ncbi.nlm.nih.gov/gene/?term=azo3026
azo3027	azo3027		azo3027	3329161	3329490	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS04458 of Ralstonia solanacearum of 31%25 (tremble:Q8Y292). No domains predicted .Signal peptide reported. NO TMH present.%3B~Conserved hypothetical protein	gene	gene3077	http://www.ncbi.nlm.nih.gov/gene/?term=azo3027
azo3028	azo3028		azo3028	3329491	3330198	+	conserved hypothetical peptidase	Conserved hypothetical peptidase. Homology to rsc0445 of R. solanacearum of 50%25 (trembl|Q8Y291). Pfam: Peptidas_C39. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites%2C suggesting that a different processing enzyme is involved. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3078	http://www.ncbi.nlm.nih.gov/gene/?term=azo3028
azo3029	azo3029		azo3029	3330212	3331177	+	hypothetical secreted protein	Hypothetical secreted protein. No good homology over the entire length in DB. No domains predicted. Signal Peptide present. No TMH present.	gene	gene3079	http://www.ncbi.nlm.nih.gov/gene/?term=azo3029
azo3030	azo3030		azo3030	3331211	3332539	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS04455 of R.solanacearum of 50%25 (tremble:Q8Y289). No domains predicted. Signal P reporting signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene3080	http://www.ncbi.nlm.nih.gov/gene/?term=azo3030
azo3031	azo3031		azo3031	3332594	3333922	-	probable transcriptional regulatory protein	Probable transcriptional regulatory protein%2C%3B~Specificity unclear	gene	gene3081	http://www.ncbi.nlm.nih.gov/gene/?term=azo3031
azo3032	azo3032		azo3032	3334477	3334860	+	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. TMH in signal peptide.	gene	gene3082	http://www.ncbi.nlm.nih.gov/gene/?term=azo3032
azo3033	azo3033		azo3033	3334857	3334991	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene3083	http://www.ncbi.nlm.nih.gov/gene/?term=azo3033
azo3034	azo3034		azo3034	3335002	3335409	+	hypothetical membrane protein	Hypothetical membrane protein. no homology to the data bank. no domains predicted. no signal peptide. 3 TMHs	gene	gene3084	http://www.ncbi.nlm.nih.gov/gene/?term=azo3034
azo3035	azo3035		azo3035	3335418	3336713	+	hypothetical membrane protein	Hypothetical membrane protein. no homology to the data bank. no domains predicted. signal peptide. 2 TMHs	gene	gene3085	http://www.ncbi.nlm.nih.gov/gene/?term=azo3035
azo3036	azo3036		azo3036	3336852	3337970	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Rgel02002356 of Rubrivivax gelatinosus of 47%25 (gi|47573226|ref|ZP_00243265.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.	gene	gene3086	http://www.ncbi.nlm.nih.gov/gene/?term=azo3036
azo3037	azo3037		azo3037	3337939	3338643	-	conserved hypothetical protein	conserved hypothetical protein. Homology to Rgel02002355 of Rubrivivax gelatinosus of 41%25 (gi|47573225|ref|ZP_00243264.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.	gene	gene3087	http://www.ncbi.nlm.nih.gov/gene/?term=azo3037
azo3038	azo3038	fdhA1	fdhA1	3339274	3342159	-	probable formate dehydrogenase%2C alpha subunit	Probable formate dehydrogenase (NADP+)%2C alpha subunit. Homology to fdh1A of M. extorquens of 60%25 (trembl|Q8KTI7). InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655)%3B Respiratory-chain NADH dehydrogenase 75 kD subunit (IPR000283)%3B Ferredoxin (IPR001041)%3B 4Fe-4S ferredoxin%2C iron-sulfur binding domain (IPR001450) Pfam: 2Fe-2S iron-sulfur cluster binding domain%3B 4Fe-2S binding doami%3B Molybdopterin oxidase%3B Molybdopterin dinucloetide binding no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3088	http://www.ncbi.nlm.nih.gov/gene/?term=azo3038
azo3039	azo3039	fdh1B	fdh1B	3342156	3343871	-	probable formate dehydrogenase (NADP+)%2C beta subunit	Probable formate dehydrogenase (NADP+)%2C beta subunit Homology to fdh1B of M. extorpuens of 55%25 (trembl|Q8KTI8) Pfam: Respiratory-chain NADH dehydrogenase 24 kD subunit%3B Respiratory-chain NADH dehydrogenase 51 kD subunit. no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3089	http://www.ncbi.nlm.nih.gov/gene/?term=azo3039
azo3040	azo3040	paaH2	paaH2	3344244	3345770	-	probable 3-hydroxybutyryl-CoA dehydrogenase	Probable 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) (Beta- hydroxybutyryl-CoA dehydrogenase) (BHBD). Activity:- 3-acetoacetyl-CoA + NADPH %3D (S)-3-hydroxybutanoyl-CoA + NADP+ Entry name TREMBL:Q9F9V1 InterPro IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. IPR008927%3B 6DGDH_C_like. IPR002110%3B ANK. IPR000205%3B NAD_BS. Pfam PF00725%3B 3HCDH%3B 2. PF02737%3B 3HCDH_N%3B 1. Identities %3D 319/502 (63%25) Prediction: Signal peptide Signal peptide probability: 0.906 Number of predicted TMHs: 0%3B~Family membership	gene	gene3090	http://www.ncbi.nlm.nih.gov/gene/?term=azo3040
azo3041	azo3041	rubA	rubA	3345835	3346002	-	probable rubredoxin	Probable rubredoxin. Homology to ruba of A. calcoaceticus of 42%25 (sprot|RUBR_ACIAD). Involved in the hydrocarbon hydroxylating system to convert dodecane to lauric acid%2C which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase. Pfam: Rubredoxin no singal peptide no TMHs%3B~Family membership	gene	gene3091	http://www.ncbi.nlm.nih.gov/gene/?term=azo3041
azo3042	azo3042		azo3042	3346059	3347039	-	NADPH quinone oxidoreductase%2C putative	ZP_00167050: 52%25 identity%3B 70%25 similarity. Quinone oxidoreductase (EC 1.6.5.5) (NADPH:quinone reductase) (Zeta- crystallin). DOES NOT HAVE ALCOHOL DEHYDROGENASE ACTIVITY. BINDS NADP AND ACTS THROUGH A ONE-ELECTRON TRANSFER PROCESS. ORTHOQUINONES ARE THE BEST SUBSTRATES. MAY ACT IN THE DETOXIFICATION OF XENOBIOTICS (BY SIMILARITY). InterPro: Zinc-containing alcohol dehydrogenase superfamily InterPro:IPR002085%3B Adh_zn_family. Pfam:PF00107%3B ADH_zinc_N TIGRFAM: 2A0302: arginine/ornithine antiporter tdh: L-threonine 3-dehydrogenase%3B~Function unclear	gene	gene3092	http://www.ncbi.nlm.nih.gov/gene/?term=azo3042
azo3043	azo3043	paaG4	paaG4	3347056	3347859	-	putative enoyl-CoA hydratase	COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). catalytic activity:-(3s)-3-hydroxyacyl-coa %3D trans-2(or 3)-enoyl- coa + H(2)o. Entry name:- SWISSPROT:PAAG_ECOLI InterPro:-IPR001753%3B EnCoA_hydrtse. Pfam:- PF00378%3B ECH%3B 1. Identities %3D 72/262 (27%25) Number of predicted TMHs: 0%3B~Family membership	gene	gene3093	http://www.ncbi.nlm.nih.gov/gene/?term=azo3043
azo3044	azo3044	ybgC	ybgC	3347868	3348293	-	probable thioesterase	Hypothetical protein HI0386. TREMBL:Q84HI6: 48%25 identity%2C 66%25 similarity 4-hydroxybenzoyl-CoA thioesterase is a protein of 141 amino-acid residues that assemble as an homotetramer. An aspartate in the N-terminal domain is thought to participate in the catalytic mechanism 4-hydroxybenzoyl-CoA + H2 O %3D 4-hydroxybenzoate + CoA IPR006683%3B Thioesterase superfamily IPR006684%3B 4-hydroxybenzoyl-CoA thioesterase Pfam:PF03061%3B 4HBT%3B No transmembrane helices (TMHMM predicted) TIGR00051: conserved hypothetical protein%3B~High confidence in function and specificity	gene	gene3094	http://www.ncbi.nlm.nih.gov/gene/?term=azo3044
azo3045	azo3045		azo3045	3348797	3349570	-	probable lactonase	TREMBL:Q84HI5: 83%25 identity%2C 89%25 similarity from Azoarcus evansii (gene name refereed as ORF2) Haloalkane dehalogenase (EC 3.8.1.5). Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds leading to the formation of the corresponding primary alcohols halide ions and protons. Has a broad substrate specificity which includes mono- and di- chlorinated and brominated alkanes. The highest activity was found with 12-dibromoethane whereas low activity was measured with the analog 12-dichloroethane. InterPro: Alpha/beta hydrolase fold Description:lactonase. InterPro:IPR000379%3B Ser_estrs Pfam:abhydrolase_2%2C Thioesterase aroC: chorismate synthase Signal P predicted nonsecretiory protein without transmembrane helices.%3B~High confidence in function and specificity	gene	gene3095	http://www.ncbi.nlm.nih.gov/gene/?term=azo3045
azo3046	azo3046		azo3046	3349583	3350377	-	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q84HI4 (80%25) and to trembl|Q89VH8 (45%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear	gene	gene3096	http://www.ncbi.nlm.nih.gov/gene/?term=azo3046
azo3047	azo3047	livG1	livG1	3350370	3351176	-	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q84HI3 (79%25) and to sprot|LIVG_ECOLI (37%25). Pfam (PF00005): ABC transporter ProSite (PS50101): ATP/GTP-binding site motif A (P-loop) Smart (SM00382): AAA ATPase superfamily%3B~Specificity unclear	gene	gene3097	http://www.ncbi.nlm.nih.gov/gene/?term=azo3047
azo3048	azo3048	livM3	livM3	3351169	3352149	-	putative branched-chain amino acid transport permease	Putative branched-chain amino acid transport permease. Homology to livM of E. coli of 31%25 as well as genes coding for a new pathway of aerobic benzoate meabolisme in A. evansii (77%25). Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: Branched-chain amino acid transport system. probable signal peptide probable 8 TMHs%3B~Specificity unclear	gene	gene3098	http://www.ncbi.nlm.nih.gov/gene/?term=azo3048
azo3049	azo3049		azo3049	3352156	3353022	-	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q84HI2 (91%25)%2C to trembl|Q89VI1 (47%25)%2C to sprot|LIVH_ECOLI (27%25) and to sprot|BRAD_PSEAE (30%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting six Tmhelix.%3B~Specificity unclear	gene	gene3099	http://www.ncbi.nlm.nih.gov/gene/?term=azo3049
azo3050	azo3050	livJ	livJ	3353237	3354418	-	putative leucine-specific binding protein	In enteric bacteria such E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar trembl|Q93FB9 (84%25) and to sprot|LIVJ_ECOLI (21%25). Pfam (PF01094): Receptor family ligand binding region Pfam (PF04392): Protein of unknown function (DUF534) SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene3100	http://www.ncbi.nlm.nih.gov/gene/?term=azo3050
azo3051	azo3051		azo3051	3354486	3354983	-	conserved hypothetical protein	Conserved hypothetical protein. Homology Daro03002253 of Dechloromonas aromatica of 43%25 (gi|53730397|ref|ZP_00151095.2|(NBCI ENTREZ)). Pfam: Hemerythrin HHE cation binding domain. Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96_ALCEU is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands. In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger. No TMHs. No signal peptide.	gene	gene3101	http://www.ncbi.nlm.nih.gov/gene/?term=azo3051
azo3052	azo3052	bzdA	bzdA	3354997	3356595	-	probable benzoate-coa ligase.	Entry name :- TREMBL:Q84HI0 Entry name :-TREMBL:Q8VUF1 InterPro IPR010071%3B AA_adenyl_dom. IPR000873%3B AMP-bind. IPR010192%3B MenE. Pfam PF00501%3B AMP-binding%3B 1 Identities %3D 414/532 (77%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene3102	http://www.ncbi.nlm.nih.gov/gene/?term=azo3052
azo3053	azo3053		azo3053	3356689	3357153	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to an orf of A. evnasii of 79%25 (trembl|Q84HH9). no domains predicted. no signal peptide. no TMHS	gene	gene3103	http://www.ncbi.nlm.nih.gov/gene/?term=azo3053
azo3054	azo3054		azo3054	3357353	3358930	-	aldehyde dehydrogenase (NAD+)	Aldehyde dehydrogenase (NAD+). Homology to the aldehyce dehydrogenase of the of the benzoate gene cluster of A. evansii of 81%25 (trembl|Q84HH8). Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. Here clustered with genes involved in the aerobic benzoate metabolism. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3104	http://www.ncbi.nlm.nih.gov/gene/?term=azo3054
azo3055	azo3055		azo3055	3359261	3360175	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to a orf of T. aromatica of 82%25 (trembl|Q8GQN8). Fusion protein containing a domain Helix-turm-helix (IPR001387). Pfam: Shikimate kinase%3B Helix-turm-helix. no signal peptide. no TMHs.	gene	gene3105	http://www.ncbi.nlm.nih.gov/gene/?term=azo3055
azo3056	azo3056		azo3056	3360200	3361864	+	probable enoyl-coa-hydratase/isomerase.	Activity:- (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O Entry name :- TREMBL:Q84HH6 InterPro :-IPR001753%3B EnCoA_hydrtse. Pfam:- PF00378%3B ECH%3B 1. Number of predicted TMHs: 0 Identities %3D 452/553 (81%25)%3B~Family membership	gene	gene3106	http://www.ncbi.nlm.nih.gov/gene/?term=azo3056
azo3057	azo3057	boxB	boxB	3362066	3363490	+	Benzoyl-CoA oxygenase component B	Benzoyl-CoA oxygenase component B. 85%25%3B~Function unclear	gene	gene3107	http://www.ncbi.nlm.nih.gov/gene/?term=azo3057
azo3058	azo3058	boxA	boxA	3363690	3364940	+	putative Benzoyl-CoA oxygenase component A	Benzoyl-CoA oxygenase component A. 84%25 4Fe4S_ferredoxin. IPR001709%3B FPN_cyt_redctse. IPR001433%3B Oxred_FAD/NAD(P). Pfam:PF00037%3B Fer4%3B 2. PF00175%3B NAD_binding_1%3B 1.%3B~High confidence in function and specificity	gene	gene3108	http://www.ncbi.nlm.nih.gov/gene/?term=azo3058
azo3059	azo3059		azo3059	3365275	3366483	+	probable 3-ketoadipyl-coa thiolase.	Entry name TREMBL:Q84HH5 InterPro IPR002155%3B Thiolase. Pfam PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Identities %3D 309/402 (76%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene3109	http://www.ncbi.nlm.nih.gov/gene/?term=azo3059
azo3060	azo3060		azo3060	3366498	3367259	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA2769 of Azoarcus sp. EbN1 of 56%25 (gnl|keqq|eba:ebA2769(KEGG)). Pfam: Hemerythrin HHE cation binding domain. Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96_ALCEU is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands. In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger. No TMHs. No signal peptide.	gene	gene3110	http://www.ncbi.nlm.nih.gov/gene/?term=azo3060
azo3061	azo3061		azo3061	3367800	3370820	-	GGDEF/EAL/PAS/PAC/GAF-domain containing protein	GGDEF/EAL/PAS/PAC/GAF-domain containing protein	gene	gene3111	http://www.ncbi.nlm.nih.gov/gene/?term=azo3061
azo3062	azo3062	brkB	brkB	3371066	3372010	-	exoribonuclease II	Putative Ribonuclease RNASE_BN Protein%2C 28%25 identity to TrEMBL%3BQ8XPH6. Has PF03631%2C Ribonuclease BN-like family%3BIPR004664%2C RNase_BN: This family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme%2C suggesting that many members of this family may not have this catalytic activity.%3B~Conserved hypothetical protein	gene	gene3112	http://www.ncbi.nlm.nih.gov/gene/?term=azo3062
azo3063	azo3063		azo3063	3372179	3373117	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV2531 of C. violaceum of 37%25. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Tranporter. Pfam: Integral membrane protein DUF6. probable 10 TMHs. probable signal peptide%3B~Conserved hypothetical protein	gene	gene3113	http://www.ncbi.nlm.nih.gov/gene/?term=azo3063
azo3064	azo3064	lrp1	lrp1	3373359	3373826	+	leucine-responsive regulatory protein	Leucine-responsive regulatory protein. Mediates a global response to leucine. Exogenous leucine affects the expression of a number of different opreons%3B Lrp mediates this effect for at least some of these operons. For example it is regulator of the branched-chain amino acid transport genes. Similar to SWISSPROT: sprot|LRP_ECOLI (40%25 Escherichia coli%2C leucine-responsive regulatory protein Lrp) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene3114	http://www.ncbi.nlm.nih.gov/gene/?term=azo3064
azo3065	azo3065	mvaB	mvaB	3374096	3375016	-	hydroxymethylglutaryl-CoA lyase	Hydroxymethylglutaryl-CoA lyase%2C MvaB. It catalyses the conversion of (S)-3-hydroxy-3-methylglutaryl-CoA to acetyl-CoA and acetoacetate during the final step of ketogenesis and leucine catabolism. Similar to trembl|Q8QGJ4 (60%25) and to pir|H83394 (56%25). InterPro (PF00682): HMG-CoA Lyase-like family%3B~High confidence in function and specificity	gene	gene3115	http://www.ncbi.nlm.nih.gov/gene/?term=azo3065
azo3066	azo3066	fadD3	fadD3	3375027	3376715	-	Long-chain fatty-acid-CoA ligase	Esterification%2C concomitant with transport%2C of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids%2C TREMBL:Q9F9U4 (61%25 identity)%3B TREMBL:Q7NX49 (69%25 identity). Pfam (PF00501): AMP-binding enzyme.%3B~High confidence in function and specificity	gene	gene3116	http://www.ncbi.nlm.nih.gov/gene/?term=azo3066
azo3067	azo3067	ycjD	ycjD	3376848	3377219	-	conserved hypothetical protein	Hypothetical protein ycjD%2C50%25 identity(65%25 similarity) to SwissProt%3BP45736. Has PF04480%2C Protein of unknown function (DUF559)%3BIPR007569%3B No SIgnal Peptide or TMH present. vsr: DNA mismatch endonuclease (vsr)	gene	gene3117	http://www.ncbi.nlm.nih.gov/gene/?term=azo3067
azo3068	azo3068	accC2	accC2	3377487	3379487	-	probable biotin carboxylase subunit of acetyl-CoA carboxylase	This protein is a component of the acetyl coenzyme a carboxylase complex%3B first%2C biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coa. Entry name TREMBL:Q8PDU1 InterPro IPR001882%3B Biotin_BS. IPR005482%3B Biotin_carb_C. IPR000089%3B Biotin_lipoyl. IPR005479%3B CPase_L_D2. IPR005481%3B CPase_L_N. Pfam PF02785%3B Biotin_carb_C%3B 1. PF00364%3B Biotin_lipoyl%3B 1. PF00289%3B CPSase_L_chain%3B 1. PF02786%3B CPSase_L_D2%3B 1. Identities %3D 382/661 (57%25) Preediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene3118	http://www.ncbi.nlm.nih.gov/gene/?term=azo3068
azo3069	azo3069	paaG5	paaG5	3379877	3380665	-	probable enoyl-CoA hydratase/isomerase	Probable enoyl-CoA hydratase :- COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). Entry name :- SWISSPROT:PAAG_ECOLI InterPro :-IPR001753%3B EnCoA_hydrtse. Pfam:- PF00378%3B ECH%3B 1. Identities %3D 75/247 (30%25) Number of predicted TMHs: 0%3B~Family membership	gene	gene3119	http://www.ncbi.nlm.nih.gov/gene/?term=azo3069
azo3070	azo3070		azo3070	3380677	3382284	-	probable carboxyltransferase subunit of acetyl-CoA carboxylase	Activity:- ATP + 3-methylcrotonoyl-CoA + HCO3- %3D ADP + phosphate + 3-methylglutaconyl-CoA Entry name:-TREMBL:Q7WDP0 InterPro:- IPR000022%3B Carboxyl_trans. Pfam:-PF01039%3B Carboxyl_trans%3B 1. Identities %3D 413/535 (77%25) Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.098%3B~Family membership	gene	gene3120	http://www.ncbi.nlm.nih.gov/gene/?term=azo3070
azo3071	azo3071		azo3071	3382372	3382614	-	hypothetical protein	Region start changed from 3382650 to 3382614 (-36 bases)%2C %2C Changed start codon from att to next gtg	gene	gene3121	http://www.ncbi.nlm.nih.gov/gene/?term=azo3071
azo3072	azo3072		azo3072	3382666	3383205	-	hypothetical protein		gene	gene3122	http://www.ncbi.nlm.nih.gov/gene/?term=azo3072
azo3073	azo3073		azo3073	3383307	3384761	-	hypothetical protein	Hypothetical protein. No homology to the data base. Pfam: Protein tyrosine kinase%2C Protein kinase domain. Interpro: IPR000719 Protein kinase%2C IPR002290 Serine/threonine protein kinase%2C IPR001245 Tyrosine protein kinase%2C IPR011009 Protein kinase-like. No signal peptide. No TMHs	gene	gene3123	http://www.ncbi.nlm.nih.gov/gene/?term=azo3073
azo3074	azo3074		azo3074	3384762	3385667	-	hypothetical protein		gene	gene3124	http://www.ncbi.nlm.nih.gov/gene/?term=azo3074
azo3075	azo3075		azo3075	3385767	3386345	-	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 3 TMHs	gene	gene3125	http://www.ncbi.nlm.nih.gov/gene/?term=azo3075
azo3076	azo3076		azo3076	3387069	3387359	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to TdenA01001814 of Thiobacillus denitrificans of 40%25 (gi|52006871|ref|ZP_00334250.1|(NBCI ENTREZ)). Has PF01402%2C Ribbon-helix-helix protein%2C copG family%3B IPR002145 HTH_CopG%3B The structure of this protein repressor%2C which is the shortest reported to date and the first isolated from a plasmid%2C has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerisation and not DNA binding as might have been expected. No TMHs. No signal peptide.	gene	gene3126	http://www.ncbi.nlm.nih.gov/gene/?term=azo3076
azo3077	azo3077		azo3077	3387356	3387649	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to xcc3092 of X. campestris of 51%25 (trembl|Q8P678). Pfam: Plasmid stabilisation system protein. Members of this family are involved in plasmid stabilisation. The exact molecular function of this protein is not known. no signal peptide. no TMHs	gene	gene3127	http://www.ncbi.nlm.nih.gov/gene/?term=azo3077
azo3078	azo3078		azo3078	3387664	3388353	-	putative transcriptional regulator%2C deoR-family	Putative transcriptional regulator%2C deoR-family	gene	gene3128	http://www.ncbi.nlm.nih.gov/gene/?term=azo3078
azo3079	azo3079		azo3079	3388508	3388876	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to stm0409 of S. typhimurium of 46%25 (tremble:Q7CR38). InterPro: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. no signal peptide. no TMHs.	gene	gene3129	http://www.ncbi.nlm.nih.gov/gene/?term=azo3079
azo3080	azo3080		azo3080	3389559	3389756	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs	gene	gene3130	http://www.ncbi.nlm.nih.gov/gene/?term=azo3080
azo3081	azo3081		azo3081	3389852	3391024	-	probable acyl-coa dehydrogenase	Entry name:- TREMBL:Q89LX4 Identities %3D 310/374 (82%25) InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B~Family membership	gene	gene3131	http://www.ncbi.nlm.nih.gov/gene/?term=azo3081
azo3082	azo3082	oruR2	oruR2	3391123	3392256	+	putative ornithine utilization regulator	Putative ornithine utilization regulator%2C%3B~Specificity unclear	gene	gene3132	http://www.ncbi.nlm.nih.gov/gene/?term=azo3082
azo3083	azo3083		azo3083	3392619	3393011	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C 44%25 identity to TrEMBL%3BQ82UI6. Has PF04247%3BInvasion gene expression up-regulator%2C SirB%3BIPR007360%3BSirB up-regulates Salmonella typhimurium invasion gene transcription. It is%2Chowever%2C not essential for the expression of these genes. Its function is unknown. No signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene3133	http://www.ncbi.nlm.nih.gov/gene/?term=azo3083
azo3084	azo3084	flp	flp	3393105	3393806	+	putative transcriptional regulator	Putative transcriptional regulator%2C%3B~Family membership	gene	gene3134	http://www.ncbi.nlm.nih.gov/gene/?term=azo3084
azo3085	azo3085		azo3085	3393825	3395108	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV2709 of Chromobacterium violaceum of 40%25 (trembl|Q7NUI9). Has PF04550%3BPhage holin family 2:Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the buildup of a holin oligomer which causes the lysis. IPR007633%3BPhage_holin_2. TMHMM2 reporting 12 TMH's Present. no signal peptide.%3B~Conserved hypothetical protein	gene	gene3135	http://www.ncbi.nlm.nih.gov/gene/?term=azo3085
azo3086	azo3086		azo3086	3395119	3395355	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ws1191 of W. succinogenes of 36%25 (trembl|Q7MRM8). no domains predicted. no signal peptide. no TMHs	gene	gene3136	http://www.ncbi.nlm.nih.gov/gene/?term=azo3086
azo3087	azo3087		azo3087	3395348	3395812	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV2710 of C.violaceum of 41%25 (trembl:Q7NUI8). Pfam: Hemerythrin HHE cation binding domain Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96_ALCEU is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands. In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger. No signal peptide. No TMHs.	gene	gene3137	http://www.ncbi.nlm.nih.gov/gene/?term=azo3087
azo3088	azo3088	norC	norC	3396033	3396458	+	putative nitric-oxide reductase subunit C	Nitric-oxide reductase subunit C (EC 1.7.99.7) (Nitric oxide reductase cytochrome c subunit) (NOR small subunit).COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION).54%25 IPR000345%3B CytC_heme_BS. Pfam%3B PF00034%3B Cytochrom_C%3B 1. SignalP: present TMHelix:1%3B~High confidence in function and specificity	gene	gene3138	http://www.ncbi.nlm.nih.gov/gene/?term=azo3088
azo3089	azo3089	norB	norB	3396487	3397866	+	putative nitric-oxide reductase subunit B	Nitric-oxide reductase subunit B (EC 1.7.99.7) (Nitric oxide reductase cytochrome b subunit). 69%25 similarity to the P.stutzeri NorB protein. COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION). NorB IS THE CATALYTIC SUBUNIT OF THE ENZYME COMPLEX. SHOWS PROTON PUMP ACTIVITY ACROSS THE MEMBRANE IN DENITRIFYING BACTERIAL CELLS. THE MONONITROGEN REDUCTION IS PROBABLY COUPLED TO ELECTRON TRANSPORT PHOSPHORYLATION.Belongs to the heme-copper respiratory oxidase family. Swiss Prot: Q59647. IPR000883%3B COX1. PF00115%3B COX1%3B 1. TMHMM:predicted transmembrane helix present. SignalP: present ccoN: cytochrome c oxidase cbb3-type%3B~High confidence in function and specificity	gene	gene3139	http://www.ncbi.nlm.nih.gov/gene/?term=azo3089
azo3090	azo3090		azo3090	3397938	3398141	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS05091 of R.solanacearum of 76%25 (trembl:Q8Y1C8). No domains present. No TMHs. No signal peptide.	gene	gene3140	http://www.ncbi.nlm.nih.gov/gene/?term=azo3090
azo3091	azo3091	trkA1	trkA1	3398151	3398831	-	putative potassium uptake protein	Potassium uptake protein. Part of the constitutive potassium transport systems trkG and trkH. May regulate the transport activity of trkG and trkH systems. Binds to NAD+ and NADH.Peripherally bound to the inner side of the inner membrane via the trkG and trkH proteins. 41%25 NAD_BS. IPR006037%3B TrkAC. IPR003148%3B TrkA_N. Pfam:PF02080%3B TrkA_C%3B 1. PF02254%3B TrkA_N%3B 1. Pfam:KTN: NAD-binding domain.%3B~Specificity unclear	gene	gene3141	http://www.ncbi.nlm.nih.gov/gene/?term=azo3091
azo3092	azo3092	trkH1	trkH1	3398833	3400161	-	putative potassium uptake protein%2C membrane component.	Membrane component of the potassium uptake system. 38%25 Cat_transpt. IPR004772%3B K_transptTrk. Pfam: PF02386%3B TrkH%3B 1. SignalP.present. TMHelix:9.%3B~High confidence in function and specificity	gene	gene3142	http://www.ncbi.nlm.nih.gov/gene/?term=azo3092
azo3093	azo3093		azo3093	3400221	3400913	-	two component system transcriptional regulatory protein	Two component system transcriptional regulatory protein%2C 53%25 Identity to TrEMBL%3BQ7W532%2CQ8XUU6. Has SMART%3BSM00448%2CREC%2C cheY-homologous receiver domain%3BIPR001789%3BCheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues. Has OmpR%2C Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Has PF00486%2C Transcriptional regulatory protein%2C C terminal%3BIPR001867 Trans_reg_C%3B This domain is almost always found associated with the response regulator receiver domain (see INTERPRO:IPR001789). It may play a role in DNA binding	gene	gene3143	http://www.ncbi.nlm.nih.gov/gene/?term=azo3093
azo3094	azo3094	kdpD2	kdpD2	3400910	3402439	-	probable sensor for high-affinity potassium transport system	Probable sensor for high-affinity potassium transport system%2C%3B~High confidence in function and specificity	gene	gene3144	http://www.ncbi.nlm.nih.gov/gene/?term=azo3094
azo3095	azo3095	norQ	norQ	3402633	3403433	+	nitric-oxide reductase	Nitric-oxide reductase ATP/GTP binding component%2CNorQ. 68%25 FGGY_kin. TMHMM:present SignalP: present.%3B~High confidence in function and specificity	gene	gene3145	http://www.ncbi.nlm.nih.gov/gene/?term=azo3095
azo3096	azo3096		azo3096	3403553	3404569	+	conserved hypothetical iron-sulfur 4Fe-4S ferredoxin transmembrane protein	Conserved hypothetical iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to pbprb0648 of P. profundum (tremblnew|CAG22521). Involved in a membrane generated redox signal. Pfam: 4Fe-4S binding domain no signal peptide 4 TMHs%3B~Conserved hypothetical protein	gene	gene3146	http://www.ncbi.nlm.nih.gov/gene/?term=azo3096
azo3097	azo3097	norD	norD	3404573	3406684	+	nitric-oxide reductase accessory cytoplasmic protein	Nitric oxide reductase NorD protein. COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION). FUNCTION UNKNOWN BUT ESSENTIAL FOR THE DENITRIFICATION PROCESS. 35%25 similarity to B. japonicum NorD. TREMBL:Q89QB3 InterPro:IPR002035%3B VWF_A. Pfam:PF00092%3B VWA%3B 1. InterPro:SM00327:von Willebrand factor type A domain SignalP:present. TMHMM: presence of TMHhelix.%3B~High confidence in function and specificity	gene	gene3147	http://www.ncbi.nlm.nih.gov/gene/?term=azo3097
azo3098	azo3098		azo3098	3406687	3407451	+	putative Fnr-like transcriptional activator	Putative Fnr-like transcriptional activator%2C%3B~Function unclear	gene	gene3148	http://www.ncbi.nlm.nih.gov/gene/?term=azo3098
azo3099	azo3099	serA	serA	3407478	3408710	-	D-3-phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase%2C SerA%2C is involved in the pathway of serine biosynthesis. Similar to sprot|SERA_ECOLI (61%25). InterPro (PF00389): D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain InterPro (PF01842): ACT domain InterPro (PF02826): D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B~High confidence in function and specificity	gene	gene3149	http://www.ncbi.nlm.nih.gov/gene/?term=azo3099
azo3100	azo3100	rdxB	rdxB	3408745	3410151	-	putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein	Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to rdxB of R. sphaeroides of 39%25 (sprot|RDXB_RHOSH). Involved in a membrane generated redox signal%3B required to maintain repression of photosynthesis gene expression in the presence of oxygen. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding doamin no signal peptide probable 5 TMHs%3B~Family membership	gene	gene3150	http://www.ncbi.nlm.nih.gov/gene/?term=azo3100
azo3101	azo3101	aau3	aau3	3410296	3410757	+	AAU3 protein precursor	AAU3 protein precursor%2C%3B~High confidence in function and specificity	gene	gene3151	http://www.ncbi.nlm.nih.gov/gene/?term=azo3101
azo3102	azo3102		azo3102	3410759	3411988	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein	gene	gene3152	http://www.ncbi.nlm.nih.gov/gene/?term=azo3102
azo3103	azo3103	nosC	nosC	3412240	3412638	+	conserved hypothetical cytochrome c5	Conserved hypothetical cytochrome c5. Homology to nosC of A. eutrophus of 62%25 (trembl|Q7WX89). This basic c-type monoheme cytochrome has an unusually low redox potential compared with mitochondrial cytochrome c. It is reactive with cytochrome c oxidases but not with reductases. InterPro: Cytochrome c class I (IPR003088) Pfam: Cytorchrome C. signal peptide. no TMHs%3B~Family membership	gene	gene3153	http://www.ncbi.nlm.nih.gov/gene/?term=azo3103
azo3104	azo3104		azo3104	3412697	3412969	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene3154	http://www.ncbi.nlm.nih.gov/gene/?term=azo3104
azo3105	azo3105		azo3105	3413017	3413235	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Rgel02003456 of Rubrivivax gelatinosus of 68%25 (gi|47572283|ref|ZP_00242328.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.	gene	gene3155	http://www.ncbi.nlm.nih.gov/gene/?term=azo3105
azo3106	azo3106		azo3106	3413290	3413937	-	conserved hypothetical secreted protein	conserved hypothetical secreted protein. Homology to TdenA01000391 of Thiobacillus denitrificans of 42%25 (gi|52008094|ref|ZP_00335471.1|(NBCI ENTREZ)). no domians predicted. signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene3156	http://www.ncbi.nlm.nih.gov/gene/?term=azo3106
azo3107	azo3107	nosL	nosL	3413940	3414467	-	putative NosL protein	Putative NosL protein. Homology to nosL of S. meliloti of 38%25 (trembl|O07331). NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18%2C540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue%2C and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocenter assembly. probable signal peptide no TMHs%3B~Family membership	gene	gene3157	http://www.ncbi.nlm.nih.gov/gene/?term=azo3107
azo3108	azo3108	nosY	nosY	3414476	3415291	-	putative copper transport system%2C permease protein	Membrane protein nosY precursor.INVOLVED IN COPPER PROCESSING. Part of the ABC transporter complex nosDFY involved in copper import. Probably responsible for the translocation of the substrate across the membrane. 43%25 Similar to the copper permease protein%2C nosY in P.stutzeri. TREMBL:Q9F0W1 InterPro:IPR001117%3B Cu-oxidase. SignalP: present. Number of predicted TMHs:6%3B~High confidence in function and specificity	gene	gene3158	http://www.ncbi.nlm.nih.gov/gene/?term=azo3108
azo3109	azo3109	nosF	nosF	3415299	3416243	-	putative copper transport system%2C ATP-binding protein	Copper transport ATP-binding protein nosF.INVOLVED IN COPPER PROCESSING/TRANSPORT.Part of the ABC transporter complex nosDFY involved in copper import. 3%25 ABC_tran%3B 1. InterPro:IPR003593%3B AAA_ATPase. IPR003439%3B ABC_transporter. InterPro:PS50101:ATP/GTP-binding site motif A (P-loop). InterPro:SM00382:AAA ATPase superfamily.%3B~High confidence in function and specificity	gene	gene3159	http://www.ncbi.nlm.nih.gov/gene/?term=azo3109
azo3110	azo3110	nosD	nosD	3416272	3417549	-	putative copper transport system%2C periplasmic-binding protein	Copper-binding periplasmic protein precursor. INVOLVED IN COPPER PROCESSING AND TRANSPORT%3B IN THE ASSEMBLY OF THE COPPER CHROMOPHORES OF NITROUS OXIDE REDUCTASE.Part of the ABC transporter complex nosDFY involved in copper import. Similar to the putative periplasmic-binding protein nosD precursor from: P.fluorescens (36%25)TREMBL:Q9F0W3 InterPro:IPR006633%3B CASH. IPR007742%3B NosD.IPR006626%3B PbH1. Pfam:PF05048%3B NosD%3B 1. Signal peptide: present.%3B~High confidence in function and specificity	gene	gene3160	http://www.ncbi.nlm.nih.gov/gene/?term=azo3110
azo3111	azo3111	nosRb	nosRb	3417557	3417988	-	conserved hypothetical transcriptional activator for nitrous-oxide reductase%2C C-termial domain	Conserved hypothetical transcriptional activator for nitrous-oxide reductase%2C C-termial domain. Homology to nosr (C-terminal domain) of Azoarcus sp. EbN1 of 74%25 (gnl|keqq|eba:ebB224(KEGG)). no domains predicted. no signal peptide. probable 3 TMHs%3B~Conserved hypothetical protein	gene	gene3161	http://www.ncbi.nlm.nih.gov/gene/?term=azo3111
azo3112	azo3112	nosRa	nosRa	3418003	3420174	-	transcriptional activator for nitrous-oxide reductase%2C N-terminal domain	Regulatory protein nosR. Transcriptional activation of the nitrous-oxide reductase gene nosZ. Similar to SWISSPROT: sprot|NOSR_PSEST (37%25 Pseudomonas stutzeri (Pseudomonas perfectomarina)%2C regulatory protein NosR). TMHMM reporting 5 transmembrane helices. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene3162	http://www.ncbi.nlm.nih.gov/gene/?term=azo3112
azo3113	azo3113	nosZ	nosZ	3420337	3422271	-	nitrous-oxide reductase	Nitrous-oxide reductase. Homology to nosZ of a. eutrophus of 78%25 (sprot|NOSZ_ALCEU) Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide (By similarity). no domains probable signal peptide no TMHs met_pdase_I: methionine aminopeptidas%3B~High confidence in function and specificity	gene	gene3163	http://www.ncbi.nlm.nih.gov/gene/?term=azo3113
azo3114	azo3114		azo3114	3422454	3422729	-	hypothetical secreted protein	Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs	gene	gene3164	http://www.ncbi.nlm.nih.gov/gene/?term=azo3114
azo3115	azo3115	lysC	lysC	3423208	3424434	-	aspartate kinase	Aspartate kinase (AK) catalyzes the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine%2C which participates in the biosynthesis of threonine%2C isoleucine and methionine. Similar to trembl|Q8RU02 (80%25) and to pir|C83531 (74%25). Pfam (PF00696): Amino acid kinase family Pfam (PF01842): two ACT domain%3B~High confidence in function and specificity	gene	gene3166	http://www.ncbi.nlm.nih.gov/gene/?term=azo3115
azo3116	azo3116		azo3116	3424699	3424995	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to NMA0336 of N.meningitidis of 59%25 (trembl:Q9JRG4) Has PF01381 Helix-turn-helix:IPR001387:HTH_3%3BThis is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein%2C bacterial methylases%2Cvarious bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum. No signal peptide or TMH reported present.	gene	gene3167	http://www.ncbi.nlm.nih.gov/gene/?term=azo3116
azo3117	azo3117		azo3117	3425017	3425976	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne1518 of N. europaea of 43%25 (trembl|Q82UG8). no domains predicted. no signal peptide. no TMHs	gene	gene3168	http://www.ncbi.nlm.nih.gov/gene/?term=azo3117
azo3118	azo3118		azo3118	3425991	3426446	+	6-pyruvoyltetrahydropterin synthase	Lyase%2C putative 6-pyruvoyl tetrahydrobiopterin synthase protein InterPro: 6-pyruvoyl tetrahydropterin synthase TIGRFAM: 6PTHBS: 6-pyruvoyl tetrahydrobiopterin synthase%3B~Specificity unclear	gene	gene3169	http://www.ncbi.nlm.nih.gov/gene/?term=azo3118
azo3119	azo3119		azo3119	3426502	3427671	-	probable fatty acid desaturase	Entry name:- TREMBL:Q8XWM4 InterPro:- IPR001522%3B Desaturase. IPR005804%3B Fa_desat. Pfam:- PF00487%3B FA_desaturase%3B 1. Identities %3D 244/390 (62%25) Prediction: Non-secretory protein Signal peptide probability: 0.008 Number of predicted TMHs: 3%3B~Family membership	gene	gene3170	http://www.ncbi.nlm.nih.gov/gene/?term=azo3119
azo3120	azo3120		azo3120	3427710	3429119	-	mechanosensitive ion channel	Region start changed from 3429549 to 3429093 (-456 bases)	gene	gene3171	http://www.ncbi.nlm.nih.gov/gene/?term=azo3120
azo3121	azo3121		azo3121	3429122	3429700	-	putative endonuclease	Putative endonuclease%2C42%25 Identity to TrEMBL%3BQ8XWM2%2C 33%25 Identity to TrEMBL%3BQ8VMF9. Has Signal peptide. Has PLDc%2C Phospholipase D. Active site motifs%3B The PLD superfamily includes enzymes involved in signal transduction%2C lipid biosynthesis%2C endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety%2C and that most of these enzymes are active as bi-lobed monomers or dimers.	gene	gene3172	http://www.ncbi.nlm.nih.gov/gene/?term=azo3121
azo3122	azo3122		azo3122	3429690	3430982	-	conserved hypothetical protein	SUN protein%3B~Specificity unclear	gene	gene3173	http://www.ncbi.nlm.nih.gov/gene/?term=azo3122
azo3123	azo3123		azo3123	3430991	3432181	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA651 of Azoarcus sp. EbN1 of 37%25 (gnl|keqq|eba:ebA651(KEGG)). InterproterPro (IPR000694): Proline-rich region. SignalP reporting signal peptide. no TMHs	gene	gene3174	http://www.ncbi.nlm.nih.gov/gene/?term=azo3123
azo3124	azo3124		azo3124	3432188	3432829	-	phosphoribosylglycinamide formyltransferase	Phosphoribosylglycinamide formyltransferase (5'-phosphoribosylglycinamide transformylase) (GAR transformylase) (GART) (2-amino-N-ribosylacetamide 5'-phosphate transformylase) (GAR formyltransferase) (Glycinamide ribonucleotide transformylase) (GAR TFase) (5%2C10-methenyltetrahydrofolate:2-amino-N-ribosylacetamide ribonucleotide transformylase) InterPro: Phosphoribosylglycinamide formyltransferase%3B~High confidence in function and specificity	gene	gene3175	http://www.ncbi.nlm.nih.gov/gene/?term=azo3124
azo3125	azo3125		azo3125	3432869	3433585	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to orf58 of Pseudomonas sp. of 42%25 (trembl|Q937A2(SRS)). No domains predicted. Signal P predicts signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene3176	http://www.ncbi.nlm.nih.gov/gene/?term=azo3125
azo3126	azo3126	mutL	mutL	3433752	3435617	+	DNA mismatch repair protein	DNA mismatch repair protein mutL. This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity). InterPro: DNA mismatch repair proteins mutL/hexB/PMS1 mutl: DNA mismatch repair protein MutL%3B~High confidence in function and specificity	gene	gene3177	http://www.ncbi.nlm.nih.gov/gene/?term=azo3126
azo3127	azo3127		azo3127	3435648	3436235	-	hypothetical secreted protein	Hypothetical secreted protein no homology of the entire protein to a protein of similar lengt in the data bank no domains predicted signal peptide no TMHs	gene	gene3178	http://www.ncbi.nlm.nih.gov/gene/?term=azo3127
azo3128	azo3128	nikR	nikR	3436442	3436924	+	nickel responsive regulator protein	Nickel responsive regulator protein%2C%3B~High confidence in function and specificity	gene	gene3179	http://www.ncbi.nlm.nih.gov/gene/?term=azo3128
azo3129	azo3129		azo3129	3437106	3437372	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to orfJ of E. coli of 33%25 (trembl|O70046). no domains predicted .no signal peptide. no TMHs.	gene	gene3180	http://www.ncbi.nlm.nih.gov/gene/?term=azo3129
azo3130	azo3130	dnaL	dnaL	3437383	3438279	-	DNA ligase	DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). CATALYZES EFFICIENT STRAND JOINING ON A SINGLE NICKED DNA. InterPro: ATP-dependent DNA ligase%3B~Specificity unclear	gene	gene3181	http://www.ncbi.nlm.nih.gov/gene/?term=azo3130
azo3131	azo3131	miaA	miaA	3438489	3439451	+	MiaA protein	tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT). Catalyzes the first step in the biosynthesis of 2-methylthio-N6-(delta(2)-isopentenyl)-adenosine (MS[2]I[6]A]) adjacent to the anticodon of several tRNA species.%3B~High confidence in function and specificity	gene	gene3182	http://www.ncbi.nlm.nih.gov/gene/?term=azo3131
azo3132	azo3132		azo3132	3439484	3440029	+	conserved hypothetical protein	Hypothetical protein%2C 56%25 identity(71%25 similarity) with TrEMBL%3BQ6LK82 Has PF07209%2C Protein of unknown function (DUF1415)%3BIPR009858%3B This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown. Signal peptide or TMH not present. EIIA-man: PTS system fructose subfamily	gene	gene3183	http://www.ncbi.nlm.nih.gov/gene/?term=azo3132
azo3133	azo3133		azo3133	3440085	3440531	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology of the protein to a protein of similar size. no domains predicted. no signal peptide. no TMHs	gene	gene3184	http://www.ncbi.nlm.nih.gov/gene/?term=azo3133
azo3134	azo3134		azo3134	3440553	3443636	-	RND efflux transporter%2C permease protein	AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q9HW27 (38%25 identity)%3B SWISSPROT:Q57124 (33%25 identity). InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear	gene	gene3185	http://www.ncbi.nlm.nih.gov/gene/?term=azo3134
azo3135	azo3135		azo3135	3443646	3444743	-	membrane fusion protein	HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q7W437 (52%25 identity)%3B TREMBL:Q8EFT5 (32%25 identity). InterPro (IPR006143): Secretion protein HlyD. Pfam (PF00529): HlyD family secretion protein. TMHMM reporting one transmembrane helix. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership	gene	gene3186	http://www.ncbi.nlm.nih.gov/gene/?term=azo3135
azo3136	azo3136	purM	purM	3444879	3445937	-	phosphoribosylformylglycinamidine cyclo-ligase	Phosphoribosylformylglycinamidine cyclo-ligase (Phosphoribosyl-aminoimidazole synthetase) (Phosphoribosylaminoimidazole synthetase) (AIR synthase) (AIR synthetase) (AIRS) InterPro: Phosphoribosylformylglycinamidine cyclo-ligase%3B~High confidence in function and specificity	gene	gene3187	http://www.ncbi.nlm.nih.gov/gene/?term=azo3136
azo3137	azo3137		azo3137	3446157	3447275	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases.It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution. TREMBL:Q82Y01: 39%25 identity%3B 58%25 similarity. TREMBL:Q8XW51: 37%25 identity%3B 53%25 similarity. InterPro:IPR002549 Pfam: PF01594:Protein of unknown function DUF70 Signal P predicted signal peptide and TMHMM predicted transmembrane helices%3B~Conserved hypothetical protein	gene	gene3188	http://www.ncbi.nlm.nih.gov/gene/?term=azo3137
azo3138	azo3138		azo3138	3447272	3447961	+	putative chromosomal replication initiator protein	Region start changed from 3447165 to 3447246 (-81 bases)	gene	gene3189	http://www.ncbi.nlm.nih.gov/gene/?term=azo3138
azo3139	azo3139		azo3139	3447999	3448661	+	haloacid dehalogenase-like hydrolase family protein	Haloacid dehalogenase-like hydrolase family is structurally different from the alpha/beta hydrolase family (abhydrolase). This family includes L-2-haloacid dehalogenase%2C epoxide hydrolases and phosphatases. Similar to trembl|Q82XZ3 (63%25) and to pir|B83604 (47%25). Pfam (PF00702): haloacid dehalogenase-like hydrolase%3B~Family membership	gene	gene3190	http://www.ncbi.nlm.nih.gov/gene/?term=azo3139
azo3140	azo3140	pcnB	pcnB	3448752	3450110	+	probable poly(A) polymerase	Probable Poly(A) polymerase. Homology to pcnB of E. coli of 41%25 (sprot|PCNB_ECOLI) POLYMERASE THAT CREATES THE 3POLY(A) TAIL FOUND IN SOME MRNAS. SEEMS TO BE INVOLVED IN PLASMID COPY NUMBER CONTROL. Pfam: Poly A polymerase family no signal peptide no TMHs%3B~Family membership	gene	gene3191	http://www.ncbi.nlm.nih.gov/gene/?term=azo3140
azo3141	azo3141	folK	folK	3450110	3450607	+	2-amino-4-hydroxy-6-hydroxymethyldihydropteridinediphosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HPPK) (6-hydroxymethyl-7%2C8-dihydropterin pyrophosphokinase) (PPPK). InterPro: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase Pfam:7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase%3B~High confidence in function and specificity	gene	gene3192	http://www.ncbi.nlm.nih.gov/gene/?term=azo3141
azo3142	azo3142		azo3142	3450614	3450997	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA1577 of Pseudomonas aeruginosa of 69%25 (trembl|Q9I3E0). Has PF04342%2C IPR007437%3BProtein of unknown function%2C DUF486%3BThis family contains several proteins of uncharacterised function. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene3193	http://www.ncbi.nlm.nih.gov/gene/?term=azo3142
azo3143	azo3143		azo3143	3451005	3451646	+	putative deoxyguanosine kinase	Deoxyguanosine kinase%2C probable (2.7.1.113) InterPro: Thymidylate kinase DTMP_kinase: thymidylate kinase%3B~Family membership	gene	gene3194	http://www.ncbi.nlm.nih.gov/gene/?term=azo3143
azo3144	azo3144	panB	panB	3451731	3452546	+	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase . InterPro: Ketopantoate hydroxymethyltransferase TIGRFAM: panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase%3B~High confidence in function and specificity	gene	gene3195	http://www.ncbi.nlm.nih.gov/gene/?term=azo3144
azo3145	azo3145	panC	panC	3452563	3453390	+	Pantoate--beta-alanine ligase	Pantothenate synthetase (Pantoate activating enzyme). catalytic activity: atp + (r)-pantoate + beta-alanine %3D amp + diphosphate + (r)-pantothenate. pathway: pantothenate biosynthesis%3B last step%2C by similarity. similarity: belongs to the pantothenate synthetase family. InterPro: Pantoate-beta-alanine ligase panC: pantoate--beta-alanine ligase%3B~High confidence in function and specificity	gene	gene3196	http://www.ncbi.nlm.nih.gov/gene/?term=azo3145
azo3146	azo3146		azo3146	3453480	3453968	+	conserved hypothetical protein	Region start changed from 3453406 to 3453454 (-48 bases)	gene	gene3197	http://www.ncbi.nlm.nih.gov/gene/?term=azo3146
azo3147	azo3147	pepN	pepN	3454036	3456720	-	PepN protein	Aminopeptidase catalyzes the removal of single amino acids from the amino terminus of small peptides and probable plays a role in their final digestion. Similar to trembl|Q8XXI8 (50%25) and to sprot|AMPN_ECOLI (47%25). Pfam (PF01433): Aminopeptidase N%2C APN (CD13)%3B~Specificity unclear	gene	gene3198	http://www.ncbi.nlm.nih.gov/gene/?term=azo3147
azo3148	azo3148	uspA	uspA	3456803	3457705	-	universal stress protein family		gene	gene3199	http://www.ncbi.nlm.nih.gov/gene/?term=azo3148
azo3149	azo3149	pma1	pma1	3457702	3460452	-	putative cation-transporting P-type ATPase	Probable cation-transporting ATPase protein (EC 3.6.3.-).Could mediate calcium influx.Integral membrane protein.Belongs to the cation transport ATPases family (P-type ATPases). Subfamily IIA. 47%25 similarity to the cyanobacterium Synechocystis sp. PCC 6803%2C pma1. protein. SWISSPROT:ATA1_SYNY3.P37367 InterPro:IPR001757%3B ATPase_E1-E2.IPR006068%3B Cation_ATPase_C.IPR004014%3B Cation_ATPase_N.IPR008250%3B E1-E2_ATPase_reg.IPR000695%3B H_ATPase.IPR005834%3B Hydrolase. Pfam:PF00689: Cation_ATPase_C%3B1. PF00690: Cation_ATPase_N%3B1. PF00122: E1-E2_ATPase%3B1. PF00702: Hydrolase%3B 1. SignalP: present. InterPro:PF00702:Haloacid dehalogenase/epoxide hydrolase family.%3B~High confidence in function and specificity	gene	gene3200	http://www.ncbi.nlm.nih.gov/gene/?term=azo3149
azo3150	azo3150		azo3150	3460566	3461057	-	conserved hypothetical RDD family protein	Conserved hypothetical RDD family protein. Homology to ne0432 of N. europaea of 42%25 (trembl|Q82X63(SRS)). Pfam: (by Smart) RDD family This family of proteins contain three highly conserved amino acids: one arginine and two aspartates%2C hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands. signal peptide. 3 TMHs%3B~Family membership	gene	gene3201	http://www.ncbi.nlm.nih.gov/gene/?term=azo3150
azo3151	azo3151		azo3151	3461066	3461431	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA7126 of Azoarcus sp. EbN1 of 45%25 (gnl|keqq|eba:ebA7126(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene3202	http://www.ncbi.nlm.nih.gov/gene/?term=azo3151
azo3152	azo3152		azo3152	3461470	3461880	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03002551 of Dechloromonas aromatica of 31%25 (gi|41723955|ref|ZP_00150845.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs	gene	gene3203	http://www.ncbi.nlm.nih.gov/gene/?term=azo3152
azo3153	azo3153		azo3153	3461877	3462467	-	probable RNA polymerase sigma factor	Probable RNA polymerase sigma factor%2C 62%25 Identity to TrEMBL%3BQ8XXN5%2C Q7P0I2. Has PF04542%2C Sigma-70 region 2%3BIPR007627%2C Sigma70_r2%3B Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix%2Cinteracts with the clamp domain of the largest polymerase subunit%2C beta prime. The aromatic residues of the recognition helix%2C found at the C-terminus of this domain are though to mediate strand separation%2C thereby allowing transcription initiation. Has PF04545%2C Sigma-70%2C region 4%3BIPR007630%2C Sigma70_r4%3B Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works%2C the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives. PF00196%2CBacterial regulatory proteins%2C luxR family%3B The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies which includes proteins with sizes ranging from 74 (gerE) to 901 amino acids (malT)%2C can be further subdivided into two classes on the basis of the mechanism by which they are activated. The first is a class of regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation%2C generally on an aspartate residue%2Cby a transmembrane kinase. The proteins that belong to this class include bvgA%2C comA%2C dctR%3B degU%2C evgA%2C fimZ%2CfixJ%2C gacA%2C glpR%2C narL%2C narP%2C nodW%2C rcsB and uhpA. The second is a class of regulators which is activated when bound to autoinducer molecules such as N-(3-oxohexanoyl)-L-homoserine lactone (OHHL. The proteins that belong to this class are carR%2C echR%2C esaR%2C expR%2C lasR%2C luxR%2C phzR%2C rhlR%2CtraR and yenR. The 'helix-turn-helix' DNA-binding motif of these proteins is located in the C-terminal section of the sequence.	gene	gene3204	http://www.ncbi.nlm.nih.gov/gene/?term=azo3153
azo3154	azo3154	ilvI	ilvI	3462564	3464276	+	acetolactate synthase	Acetolactate synthase isozyme III large subunit (AHAS- III) (Acetohydroxy-acid synthase III large subunit) (ALS-III). InterPro: Acetolactate synthase large subunit biosynthetic type TIGRFAM: acolac_lg: acetolactate synthase large subunit%2C biosynthetic type%3B~High confidence in function and specificity	gene	gene3205	http://www.ncbi.nlm.nih.gov/gene/?term=azo3154
azo3155	azo3155	ilvH	ilvH	3464331	3464822	+	acetolactate synthase	Acetolactate synthase small subunit (AHAS) (Acetohydroxy-acid synthase small subunit) (ALS). InterPro: Acetolactate synthase small subunit TIGRFAM: acolac_sm: acetolactate synthase small subunit%3B~High confidence in function and specificity	gene	gene3206	http://www.ncbi.nlm.nih.gov/gene/?term=azo3155
azo3156	azo3156	ilvC	ilvC	3464912	3465928	+	IlvC protein	Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase). InterPro: Acetohydroxy acid isomeroreductase TIGRFAM: ilvC: ketol-acid reductoisomerase%3B~High confidence in function and specificity	gene	gene3207	http://www.ncbi.nlm.nih.gov/gene/?term=azo3156
azo3157	azo3157	pssA	pssA	3466062	3466856	+	putative CDP-diacylglycerol--serine O-phosphatidyltransferase	This enzyme%2C CDP-diacylglycerol--serine O-phosphatidyltransferase%2C is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine %3D CMP + L-1-phosphatidylserine. Entry name:-SWISSPROT:PSS_HELPY identity:- 34%25 InterPro:-IPR000462%3B CDP-OH_P_trans. IPR004533%3B PssA. Pfam:- PF01066%3B CDP-OH_P_transf%3B 1. Number of predicted TMHs: 6 Prediction: Non-secretory protein Signal peptide probability: 0.047(YES)%3B~Family membership	gene	gene3208	http://www.ncbi.nlm.nih.gov/gene/?term=azo3157
azo3158	azo3158	colR	colR	3466884	3467567	+	two-component system regulatory protein	Two-component system regulatory protein ColR%2C%3B~High confidence in function and specificity	gene	gene3209	http://www.ncbi.nlm.nih.gov/gene/?term=azo3158
azo3159	azo3159	colS	colS	3467557	3468843	+	two-component system sensor protein	Two-component system sensor protein ColS%2C%3B~High confidence in function and specificity	gene	gene3210	http://www.ncbi.nlm.nih.gov/gene/?term=azo3159
azo3160	azo3160		azo3160	3468913	3469608	+	conserved hypothetical protein	Similar to TREMBL:P95473 (66%25 identity)%3B TREMBL:Q87X18 (66%25 identity)%3B TREMBL:Q87TV0 (61%25 identity).	gene	gene3211	http://www.ncbi.nlm.nih.gov/gene/?term=azo3160
azo3161	azo3161	inaA	inaA	3469605	3470279	+	conserved hypothetical InaA protein	Conserved hypothetical InaA protein. Homology to inaA of P. putida of 39%25 (gnl|keqq|ppu:PP0904(KEGG)). Pfam: Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases Pkinase. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica. No signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene3212	http://www.ncbi.nlm.nih.gov/gene/?term=azo3161
azo3162	azo3162	leuA1	leuA1	3470652	3472187	+	2-isopropylmalate synthase	2-isopropylmalate synthase%2C LeuA%2C is part of the leucine biosynthesis pathway.Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate). Similar to sprot|LEU1_NEIMB (70%25) and to sprot|LEU1_ECOLI (51%25). Pfam: HMGL-like%3B~High confidence in function and specificity	gene	gene3213	http://www.ncbi.nlm.nih.gov/gene/?term=azo3162
azo3163	azo3163		azo3163	3472263	3472613	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to bb2106 of B. bronchispetica of 55%25 (trembl|Q7WKK0(SRS)). No domains predicted. signal peptide. 2 TMHs.%3B~Conserved hypothetical protein	gene	gene3214	http://www.ncbi.nlm.nih.gov/gene/?term=azo3163
azo3164	azo3164	wrbA2	wrbA2	3472610	3473209	-	probable tryptophan repressor binding protein (flavodoxin)	Flavoprotein wrbA. TREMBL:Q8XZ48:63%25 identity%2C 73%25 similarity%3B Q7NZW0: 61%25%2C 72%25 WrbA%2C related to and slightly larger than flavodoxin. In Escherichia coli%2C this protein is produced during stationary phase%2C binds to the trp repressor%2C and makes trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Three copies are found in Sinorhizobium meliloti InterPro: IPR008254%3B Flav_nitox_synth. IPR001226%3B Flavodoxin. Pfam PF00258: flavodoxin Absence of signal peptide (Signal P predicted) and Transmembrane helices (TMHMM predicted). wrbA2 identical to wrbA1 and wrbA3 by 37%25 and 23%25 respectively.%3B~High confidence in function and specificity	gene	gene3215	http://www.ncbi.nlm.nih.gov/gene/?term=azo3164
azo3165	azo3165		azo3165	3473290	3474516	+	exoribonuclease II	Putative membrane protein(Ribonuclease BN)36%25 identity to TrEMBL%3B Q7NZV9.TrEMBL%3BQ8XZ47(27%25 identity). Has PF03631%2C Ribonuclease BN-like family%3BIPR004664%2CRNase_BN%3BThis family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme%2C suggesting that many members of this family may not have this catalytic activity.%3B~High confidence in function and specificity	gene	gene3216	http://www.ncbi.nlm.nih.gov/gene/?term=azo3165
azo3166	azo3166		azo3166	3474504	3476027	-	Hypothetical Protein	Hypothetical Protein%2C20%25 identity to TrEMBL%3BQ9HUK7. Very Bad homology with the hits in the DB over entire length of protein. No substantial good hits available. No signal peptide or TMH reported present.	gene	gene3217	http://www.ncbi.nlm.nih.gov/gene/?term=azo3166
azo3167	azo3167	rplU	rplU	3476239	3476550	+	50S ribosomal protein L21	50S ribosomal protein L21%2C 83%25 Identity to TrEMBL%3BQ7WQL6%2CQ7W1P0%2C Q8XVK8. Has PF00829%2C Ribosomal prokaryotic L21 protein%3BIPR001787 Ribosomal_L21p%3B Ribosomes are the particles that catalyze mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain%2C situated in the P site as peptidyl-tRNA%2C is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA%2C extended by one residue%2C is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites MEDLINE:11297922%2CMEDLINE:11290319. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.	gene	gene3218	http://www.ncbi.nlm.nih.gov/gene/?term=azo3167
azo3168	azo3168	rpmA	rpmA	3476566	3476841	+	50S ribosomal protein L27	50S ribosomal protein L27.%3B~High confidence in function and specificity	gene	gene3219	http://www.ncbi.nlm.nih.gov/gene/?term=azo3168
azo3169	azo3169		azo3169	3476915	3478141	+	probable GTP-binding protein	Hypothetical GTP-binding protein BU389. TREMBL:Q7NZS1: 67%25 identity%3B 79%25 similarity. InterPro: GTP1/OBG family InterPro:IPR006074%3B GTP1/OBG_dom. IPR006073: GTP1_OBG. IPR006169: GTP1_OBG_sub. Pfam:PF01018%3B GTP1_OBG%3B Pfam:arf:ADP-ribosylation factor family. TIGR00092: conserved hypothetical protein TIGRFAM bcpB: phosphonopyruvate decarboxylase-re%3B~Specificity unclear	gene	gene3220	http://www.ncbi.nlm.nih.gov/gene/?term=azo3169
azo3170	azo3170	proB	proB	3478164	3479279	+	prob protein	Glutamate 5-kinase catalyses the first step in the biosynthesis of proline%2C the ATP-dependent phosphorylation of glutamate to glutamate 5-phosphate. It belongs to the larger family of aspartokinases. Similar to sprot|PROB_PSEAE (63%25)%2C to sprot|PROB_RALSO (63%25) and to sprot|PROB_ECOLI (39%25). Pfam (PF00696): Aspartokinase superfamily Pfam (PF01472): PUA domain InterPro (IPR001057): Glutamate 5-kinase%3B~High confidence in function and specificity	gene	gene3221	http://www.ncbi.nlm.nih.gov/gene/?term=azo3170
azo3171	azo3171		azo3171	3479458	3480543	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne2236 of N. europaea of 58%25 (trembl:Q82SS1). No domains predicted. No signal peptide. No TMHs	gene	gene3222	http://www.ncbi.nlm.nih.gov/gene/?term=azo3171
azo3172	azo3172		azo3172	3480540	3482300	+	putative long chain fatty acid coA ligase	It belongs to the ATP-dependent AMP-binding enzyme family. Entry name Q9X7Y5 Primary accession number Q9X7Y5 Identities %3D 193/609 (31%25) InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 2 Signal peptide probability: 0.006 Number of predicted TMHs: 0%3B~Family membership	gene	gene3223	http://www.ncbi.nlm.nih.gov/gene/?term=azo3172
azo3173	azo3173	galE1	galE1	3482297	3483427	+	UDP-glucose 4-epimerase	UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP- galactose 4-epimerase). PLAYS AN ESSENTIAL ROLE IN THE INCORPORATION OF GALACTOSE INTO MENINGOCOCCAL LIPOPOLYSACCHARIDE SURFACE MOLECULES WHICH ARE IMPORTANT FOR PATHOGENESIS. hemL: glutamate-1-semialdehyde-21-amin%3B~High confidence in function and specificity	gene	gene3224	http://www.ncbi.nlm.nih.gov/gene/?term=azo3173
azo3174	azo3174		azo3174	3483441	3484316	-	putative methyltransferase	InterPro (IPR000051): SAM (and some other nucleotide) binding motif. InterPro (IPR001601): Generic methyltransferase. Pfam (PF01209): ubiE/COQ5 methyltransferase family.%3B~Function unclear	gene	gene3225	http://www.ncbi.nlm.nih.gov/gene/?term=azo3174
azo3175	azo3175		azo3175	3484397	3485239	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal Peptide present. No TMH present.	gene	gene3226	http://www.ncbi.nlm.nih.gov/gene/?term=azo3175
azo3176	azo3176		azo3176	3485581	3486774	+	permease component of an ABC-transporter system	Region start changed from 3485680 to 3485581 (99 bases)	gene	gene3227	http://www.ncbi.nlm.nih.gov/gene/?term=azo3176
azo3177	azo3177	lolE3	lolE3	3486774	3487988	+	permease component of an ABC transporter system	part of a lipoprotein translocation system (translocates lipoproteins from the inner membrane to periplasmic chaperone%2C LolA%2C which transfers the lipoproteins to an outer membrane receptor%2C LolB%2C which anchors the lipoprotein to the outer membrane of the Gram-negative bacterial cell envelope)%3B~Specificity unclear	gene	gene3228	http://www.ncbi.nlm.nih.gov/gene/?term=azo3177
azo3178	azo3178		azo3178	3488167	3488946	+	conserved hypothetical protein	Similar to TREMBL:Q82SR1 (47%25 identity).	gene	gene3229	http://www.ncbi.nlm.nih.gov/gene/?term=azo3178
azo3179	azo3179	prpE	prpE	3489012	3490904	-	probable propionyl-CoA synthetase	Catalysis the synthesis of propionyl-CoA from propionate and CoA. Also converts acetate to acetyl-CoA but with a lower specific activity (By similarity). Catalysis of the reaction:- ATP + propanoate + CoA %3D AMP + diphosphate + propanoyl-CoA Entry name SWISSPROT:PRPE_SALTY InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 1. Identities %3D 372/627 (59%25) Number of predicted TMHs: 1%3B~High confidence in function and specificity	gene	gene3230	http://www.ncbi.nlm.nih.gov/gene/?term=azo3179
azo3180	azo3180		azo3180	3491000	3492196	-	putative response regulator protein	Putative response regulator protein%2C%3B~Family membership	gene	gene3231	http://www.ncbi.nlm.nih.gov/gene/?term=azo3180
azo3181	azo3181		azo3181	3492225	3493199	-	probable dehydrogenase protein	Region start changed from 3493365 to 3493173 (-192 bases)	gene	gene3232	http://www.ncbi.nlm.nih.gov/gene/?term=azo3181
azo3182	azo3182		azo3182	3493390	3494259	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03003801 of Dechloromonas aromatica of 44%25 (gi|41722610|ref|ZP_00149605.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.	gene	gene3233	http://www.ncbi.nlm.nih.gov/gene/?term=azo3182
azo3183	azo3183	lemA2	lemA2	3494332	3494907	+	conserved hypothetical lemA family protein	Putative cytoplasmic membrane protein%2C lemA%2C 41%25 identity(63%25 similarity) to TrEMBL%3BQ9FA50.TrEMBL%3BQ7CNK7(37%25 identity). Has PF04011%2CLemA family%3BIPR007156%3BThe members of this family are related to the LemA protein P71452. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.%3B~Conserved hypothetical protein	gene	gene3234	http://www.ncbi.nlm.nih.gov/gene/?term=azo3183
azo3184	azo3184		azo3184	3494927	3495829	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE0281 of Nitrosomonas europaea of 34%25 (trembl|Q82XI9(SRS)). No domains predicted. no signal peptide. 2 TMHs%3B~Conserved hypothetical protein	gene	gene3235	http://www.ncbi.nlm.nih.gov/gene/?term=azo3184
azo3185	azo3185	abcZ	abcZ	3495834	3497804	-	probable ABC transporter ATP-binding protein	ABC transporter ATP-binding protein uup-1. InterPro: AAA ATPase superfamily Presence of SMC domain at N-terminal. Occurence of HypB/UreG nucleotide binding domain. FERM and yrdC domains are also present. Presence of uncharacterized P-loop hydralase domain. Presence of signal peptide and transmembrane helices. 61%25 identity and 76%25 similarity to Chromobacterium ABC transporter.%3B~Family membership	gene	gene3236	http://www.ncbi.nlm.nih.gov/gene/?term=azo3185
azo3186	azo3186		azo3186	3497849	3499915	+	hypothetical protein	Probable site-specific recombinase.%3B~Function unclear%3B~ORF7	gene	gene3237	http://www.ncbi.nlm.nih.gov/gene/?term=azo3186
azo3187	azo3187		azo3187	3500067	3500861	-	conserved hypothetical serine protease	Conserved hypothetical serine protease. Homology to mucD of N. europaea of 50%25 (trembl|Q82XA8). InterPro: Serine proteases trypsin family (IPR001254)%3B Chymotrypsin serin protease family (S1) (IPR001314). Pfam: Trypsin. signal peptide. no TMHs%3B~Family membership	gene	gene3239	http://www.ncbi.nlm.nih.gov/gene/?term=azo3187
azo3188	azo3188		azo3188	3500858	3501787	-	soluble lytic murein transglycosylase precursor	Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) (Slt70). Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity). InterPro: SLT domain%3B~Family membership	gene	gene3240	http://www.ncbi.nlm.nih.gov/gene/?term=azo3188
azo3189	azo3189		azo3189	3501801	3503081	-	NDPsugar dehydrogenase	CapL protein. Required for the biosynthesis of type 1 capsular polysaccharide. InterPro: UDP-glucose/GDP-mannose dehydrogenase family gutA: pts system glucitol/sorbitol-s%3B~Specificity unclear	gene	gene3241	http://www.ncbi.nlm.nih.gov/gene/?term=azo3189
azo3190	azo3190		azo3190	3503118	3505919	-	conserved hypothetical protein	In part%3B~Function unclear	gene	gene3242	http://www.ncbi.nlm.nih.gov/gene/?term=azo3190
azo3191	azo3191	atoC	atoC	3505919	3507280	-	probable acetoacetate metabolism regulatory protein	Probable acetoacetate metabolism regulatory protein%2C%3B~Specificity unclear	gene	gene3243	http://www.ncbi.nlm.nih.gov/gene/?term=azo3191
azo3192	azo3192		azo3192	3507270	3509348	-	putative two component sensor histidine kinase	Putative two component sensor histidine kinase%2C%3B~Family membership	gene	gene3244	http://www.ncbi.nlm.nih.gov/gene/?term=azo3192
azo3193	azo3193		azo3193	3509439	3510821	-	glycosyltransferase	Might transfer a sugar moiety directly to a lipd acceptor. Putative colanic biosynthesis UDP-glucose lipid carrier transferase. InterPro: Bacterial sugar transferase%3B~Family membership	gene	gene3245	http://www.ncbi.nlm.nih.gov/gene/?term=azo3193
azo3194	azo3194		azo3194	3511072	3511518	+	conserved hypothetical protein		gene	gene3246	http://www.ncbi.nlm.nih.gov/gene/?term=azo3194
azo3195	azo3195		azo3195	3517200	3518531	-	Hypothetical protein	Hypothetical protein. No known Domains/Features/Signal Peptide or TMH present. Weak Homology with hits in the database.	gene	gene3251	http://www.ncbi.nlm.nih.gov/gene/?term=azo3195
azo3197	azo3197	thyA	thyA	3518714	3519508	+	thymidylate synthase	Thymidylate synthase [thyA]%2C 79%25 identity to TrEMBL%3BQ5P233. Has PF00303%2C Thymidylate synthase.Thymidylate synthase catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5%2C10-methylenetetrahydrofolate to dihydrofolate. IPR000398%2CThymidylat_synth%3B~High confidence in function and specificity	gene	gene3252	http://www.ncbi.nlm.nih.gov/gene/?term=azo3197
azo3198	azo3198	folA	folA	3519505	3519999	+	FolA protein	Dihydrofolate reductase. catalytic activity: 5%2C6%2C7%2C8-tetrahydrofolate + nadp(+) %3D 7%2C8- dihydrofolate + nadph. pathway: essential step for de novo glycine and purine synthesis%2C dna precursor synthesis%2C and for the conversion of dump to dtmp. Pfam: Dihydrofolate reductase%3B~High confidence in function and specificity	gene	gene3253	http://www.ncbi.nlm.nih.gov/gene/?term=azo3198
azo3199	azo3199	adiA	adiA	3520046	3522289	-	putative orn/arg/lys decarboxylase	Putative orn/arg/lys decarboxylase. Homology to adiA of E. coli of 37%25 (sprot|ADIA_ECOLI). This family is composed of ornithine decarboxylases (ODC)%2C arginine decarboxylases (ADC) and lysine decarboxylases (LDC)%2C and belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase domain superfamily (fold I). These enzymes catalyse the decarboxylation of ornithine%2Carginine%2C or lysine%2C respectively using PLP as a co-factor. Pfam: Orn/Lys/Arg decarboxylase no signal peptide no TMHs%3B~Specificity unclear	gene	gene3254	http://www.ncbi.nlm.nih.gov/gene/?term=azo3199
azo3200	azo3200	dcd	dcd	3522456	3523022	-	dCTP deaminase	dCTP deaminase (Deoxycytidine triphosphate deaminase) InterPro: dUTPase%3B~High confidence in function and specificity	gene	gene3255	http://www.ncbi.nlm.nih.gov/gene/?term=azo3200
azo3201	azo3201		azo3201	3523125	3524216	-	putative iron sulfur binding protein	Mrp protein homolog InterPro: Domain of unknown function DUF59 desulf_FeS4: desulfoferrodoxin FeS4 iron%3B~Function unclear	gene	gene3256	http://www.ncbi.nlm.nih.gov/gene/?term=azo3201
azo3202	azo3202		azo3202	3524441	3525022	+	lipoprotein attached to the membrane by a lipid anchor	Belongs to the ompa family. InterPro: Bacterial outer membrane protein%3B~Function unclear	gene	gene3257	http://www.ncbi.nlm.nih.gov/gene/?term=azo3202
azo3203	azo3203		azo3203	3525107	3527278	+	MetG protein	Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS).%3B~High confidence in function and specificity	gene	gene3258	http://www.ncbi.nlm.nih.gov/gene/?term=azo3203
azo3204	azo3204	sulP2	sulP2	3527498	3529189	+	putative sulfate transporter	Sulfate permease%2C SulP. Permease member of the MFS superfamily%2C involved in the transport of sulfate. Putative sulfate transporter ychM. InterPro: IPR002645%3B STAS. IPR001902%3B Sulph_transpt. Pfam: PF01740%3B STAS%3B 1. PF00916%3B Sulfate_transp%3B 1. SignalP: present.%3B~High confidence in function and specificity	gene	gene3259	http://www.ncbi.nlm.nih.gov/gene/?term=azo3204
azo3205	azo3205		azo3205	3529182	3529478	+	conserved hypothetical acylphosphatase	Conserved hypothetical acylphosphatase. Homology to pf0283 of P. furiosus of 56%25 (trembl|Q8U414). Acylphosphatase specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates%2C its substrates including 1%2C3-diphosphoglycerate and carbamyl phosphate. Although its physiological role is as yet unknown it may%2C however%2C play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis. InterPro: Acylphosphatase (IPR001792). Pfam: Acylphosphatase. no signal peptide. no TMHs.%3B~Function unclear	gene	gene3260	http://www.ncbi.nlm.nih.gov/gene/?term=azo3205
azo3206	azo3206		azo3206	3529488	3531545	-	membrane protein%2C alkaline phosphatase superfamily		gene	gene3261	http://www.ncbi.nlm.nih.gov/gene/?term=azo3206
azo3207	azo3207		azo3207	3531569	3532429	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA1688 of Pseudomonas aeruginosa of 54%25 (trembl|Q9X6R1(SRS)). No domains predicted. Signal p reporting signal peptide present. NO TMH present.%3B~Conserved hypothetical protein	gene	gene3262	http://www.ncbi.nlm.nih.gov/gene/?term=azo3207
azo3208	azo3208	dnaE1	dnaE1	3532537	3536055	-	DNA-directed DNA polymerase.	DNA polymerase III alpha subunit. DNA POLYMERASE III IS A COMPLEX MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THIS DNA POLYMERASE ALSO EXHIBITS 3 TO 5 EXONUCLEASE ACTIVITY. THE ALPHA CHAIN IS THE DNA POLYMERASE (BY SIMILARITY). InterPro: DNA polymerase III alpha subunit TIGRFAM: polc: DNA polymerase III alpha subunit%3B~High confidence in function and specificity	gene	gene3263	http://www.ncbi.nlm.nih.gov/gene/?term=azo3208
azo3209	azo3209	qor	qor	3536117	3537091	-	NADPH:quinone reductase	TREMBL:Q8XXD1: 69%25 identity%2C 76%25 similarity. Quinone oxidoreductase (EC 1.6.5.5) . qor%2C RSc2184%3B probable NADPH:quinone reductase%2C zeta-crystallin homolog oxidoreductase protein [EC:1.6.5.5] InterPro: Zinc-containing alcohol dehydrogenase superfamily InterPro:IPR002085%3B Adh_zn_family. IPR002364:QOR_zeta_crystal. Pfam:PF00107%3B ADH_zinc_N%3B 1 tdh: L-threonine 3-dehydrogenase%3B~High confidence in function and specificity	gene	gene3264	http://www.ncbi.nlm.nih.gov/gene/?term=azo3209
azo3210	azo3210		azo3210	3537116	3538288	-	exported protein similar to outer membrane phospholipases	Exported protein with C-terminal domain%3B~Function unclear	gene	gene3265	http://www.ncbi.nlm.nih.gov/gene/?term=azo3210
azo3211	azo3211	maeB2	maeB2	3538418	3540706	-	probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)	Probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+). Homology to dme of S. meliloti of 61%25 (sprot|MAO1_RHIME). Required for symbiotic nitrogen fixation. Plays a key role in the conversion of malate to acetyl-CoA for efficient tricarboxylic acid cycle function in nitrogen-fixating bacteria. InterPro: Phosphate acetyl/butaryl transferase (IPR002505)%3B Malic enzyme (IPR001891) Pfam: Malic enzyme%3B Phosphate acetyl/butaryl transferase Tigrfam: pta: phosphotransacetylase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3266	http://www.ncbi.nlm.nih.gov/gene/?term=azo3211
azo3212	azo3212	parA3	parA3	3541054	3541833	+	ParA family protein	Sporulation initiation inhibitor protein soj. INHIBITS THE INITIATION OF SPORULATION SPO0J ANTAGONIZES THIS INHIBITION. SOJ ULTIMATELY INHIBITS THE ACTIVATION (PHOSPHORYLATION) OF SPO0A. IT IS NOT REQUIRED FOR CHROMOSOME PARTITIONING. InterPro: ParA family ATPase%3B~Function unclear	gene	gene3267	http://www.ncbi.nlm.nih.gov/gene/?term=azo3212
azo3213	azo3213	uvrD	uvrD	3541853	3544072	-	DNA helicase II	DNA helicase II (EC 3.6.1.-). HAS BOTH ATPASE AND HELICASE ACTIVITIES. UNWINDS DNA DUPLEXES WITH 3 TO 5 POLARITY WITH RESPECT TO THE BOUND STRAND AND INITIATES UNWINDING MOST EFFECTIVELY WHEN A SINGLE-STRANDED REGION IS PRESENT. INVOLVED IN THE POSTINCISION EVENTS OF NUCLEOTIDE EXCISION REPAIR AND METHYL-DIRECTED MISMATCH REPAIR. InterPro: UvrD/REP helicase.%3B~High confidence in function and specificity	gene	gene3268	http://www.ncbi.nlm.nih.gov/gene/?term=azo3213
azo3214	azo3214		azo3214	3544402	3544728	+	conserved hypothetical protein	Conserved hypothetical. Homology to Daro03003519 of Dechloromonas aromatica of 32%25 (gi|41722969|ref|ZP_00149935.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs	gene	gene3269	http://www.ncbi.nlm.nih.gov/gene/?term=azo3214
azo3215	azo3215		azo3215	3544948	3547569	+	CAL95831.1	Region start changed from 3544790 to 3544922 (-132 bases)	gene	gene3270	http://www.ncbi.nlm.nih.gov/gene/?term=azo3215
azo3216	azo3216	rlpB	rlpB	3547581	3548096	+	putative lipoprotein	rare lipoprotein B precursor	gene	gene3271	http://www.ncbi.nlm.nih.gov/gene/?term=azo3216
azo3217	azo3217	holA	holA	3548093	3549103	+	DNA-directed DNA polymerase	DNA polymerase III delta subunit. DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity. The delta subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA.%3B~High confidence in function and specificity	gene	gene3272	http://www.ncbi.nlm.nih.gov/gene/?term=azo3217
azo3218	azo3218	proA	proA	3549209	3550468	+	ProA protein	Gamma-glutamyl phosphate reductase%2C ProA. Similar to sprot|PROA_ECOLI (45%25) and to sprot|PROA_RALSO (62%25). Gamma-glutamyl phosphate reductase (GPR) is the enzyme that catalyzes the second step in the biosynthesis of proline from glutamate%2C the NADP-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. TIGRFAM proA : gamma-glutamyl phosphate reducta%3B~High confidence in function and specificity	gene	gene3273	http://www.ncbi.nlm.nih.gov/gene/?term=azo3218
azo3219	azo3219	xerD	xerD	3550691	3551608	+	integrase/recombinase	Tyrosine recombinase xerD. Site-specific tyrosine recombinase which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (By similarity). InterPro: Phage integrase.%3B~High confidence in function and specificity	gene	gene3274	http://www.ncbi.nlm.nih.gov/gene/?term=azo3219
azo3220	azo3220	ybaK	ybaK	3551633	3552124	+	putative transcriptional regulator protein	Putative DNA-dependent transcriptional regulator%2CYbaK.68%25 identity (75%25 similarity) to TrEMBL%3BQ748B9. TrEMBL%3B Q8FK79(29%25 identity to E.coli%2CybaK).SwissProt%3BP37175 Has PF04073%2C YbaK / prolyl-tRNA synthetases associated domain%3BIPR007214%3B This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus%2C the domain is thought to be involved in oligo-nucleotide binding%2C with possible roles in recognition/discrimination or editing of prolyl-tRNA. TIGR00011%3B YbaK_EbsC%3B 1%3B~High confidence in function and specificity	gene	gene3275	http://www.ncbi.nlm.nih.gov/gene/?term=azo3220
azo3221	azo3221	hvrA2	hvrA2	3552261	3552620	+	putative trans-acting regulatory protein HvrA	Putative trans-acting regulatory protein HvrA. Homology to hvrA of R. capsulatus of 28%25 (sprot|HVRA_RHOCA) IT IS A DIM-LIGHT TRANS-ACTING ACTIVATOR OF PUF AND PUH EXPRESSION BUT HAS NO EFFECT ON THE EXPRESSION OF THE PUC OPERON. IT IS RESPONSIBLE FOR REGULATING LIGHT-HARVESTING-I AND REACTION CENTER STRUCTURAL GENE EXPRESSION DIFFERENTIALLY FROM THAT OF LIGHT-HARVESTING-II EXPRESSION IN RESPONSE TO ALTERATIONS IN LIGHT. PROPER LIGHT REGULATION OF LIGHT-HARVESTING AND REACTION CENTER POLYPEPTIDE SYNTHESIS IS INDEED AN IMPORTANT PHYSIOLOGICAL TRAIT THAT ENABLES CELLS TO ADAPT TO EVER-CHANGING ENVIRONMENTAL CONDITIONS OF LIGHT INTENSITY. InterPro: H-NS histone family (IPR001801) Pfam: H-NS histone family no signal peptide no TMHs%3B~Family membership	gene	gene3276	http://www.ncbi.nlm.nih.gov/gene/?term=azo3221
azo3222	azo3222	folB	folB	3552711	3553088	-	FolB protein	Dihydroneopterin aldolase (DHNA). CATALYZES THE CONVERSION OF 78-DIHYDRONEOPTERIN TO 6-HYDROXYMETHYL-78-DIHYDROPTERIN. InterPro: Dihydroneopterin aldolase TIGRFAM: folB_dom: FolB domain%3B~High confidence in function and specificity	gene	gene3277	http://www.ncbi.nlm.nih.gov/gene/?term=azo3222
azo3223	azo3223		azo3223	3553201	3553797	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein.51%25 identity to TrEMBL%3BQ6D157. Has PF02660%2C Domain of unknown function DUF%3BIPR003811%3B This family consists of hypothetical transmembrane proteins none of which have any known function%2C the aligned region is around 200 amino acids long. TMHMM2 predicts 4 TMH's. Signal peptide present%2C but is overlapping with the DYF%2CPF02660 domain. SO is the TMH's.%3B~Conserved hypothetical protein	gene	gene3278	http://www.ncbi.nlm.nih.gov/gene/?term=azo3223
azo3224	azo3224	gcp	gcp	3553798	3554829	-	probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase(Glycoprotease). Hydrolysis of o-sialoglycoproteins%3B cleaves 31-arg-|-asp-32 bond in glycophorin a. Does not cleave unglycosylated proteins%2Cdesialylated glycoproteins or glycoproteins that are only n-glycosylated. Could be a metalloprotease. InterPro: Glycoprotease (M22) metallo-protease family (IPR000905) Pfam: Glycoprotease family Tigrfam: gcp: metalloendopeptidase putative%2C glycoprotease family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3279	http://www.ncbi.nlm.nih.gov/gene/?term=azo3224
azo3225	azo3225	rpsU	rpsU	3554961	3555173	+	30S ribosomal protein S21	30S ribosomal protein S21.%3B~Function unclear	gene	gene3280	http://www.ncbi.nlm.nih.gov/gene/?term=azo3225
azo3226	azo3226	dnaG	dnaG	3555250	3557070	+	DNA primase	DNA primase (EC 2.7.7.-). DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis. MG010: DNA primase-related protein.%3B~High confidence in function and specificity	gene	gene3281	http://www.ncbi.nlm.nih.gov/gene/?term=azo3226
azo3227	azo3227	rpoD	rpoD	3557120	3559108	+	RNA polymerase sigma factor	RNA polymerase sigma factor rpoD (Sigma-70). The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. This is the primary sigma-factor of this bacteria. Similar to SWISSPROT: sprot|RPOD_ECOLI (54%25 Escherichia coli%2C RNA polymerase sigma factor rpoD) / sprot|RPOD_PSEAE (53%25 Pseudomonas aeruginosa%2C RNA polymerase sigma factor rpoD (sigma-70)) InterPro: IPR009043 RNA polymerase%2C sigma subunit. Pfam: PF00140 Sigma-70 factor. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene3282	http://www.ncbi.nlm.nih.gov/gene/?term=azo3227
azo3228	azo3228	gloA2	gloA2	3559582	3559950	-	lactoylglutathione lyase	Glyoxalase I catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. Similar to trembl|Q9HY85 (74%25) and to sprot|LGUL_NEIMA (70%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ProDom (PD002334): Glyoxalase I%3B~High confidence in function and specificity	gene	gene3284	http://www.ncbi.nlm.nih.gov/gene/?term=azo3228
azo3229	azo3229		azo3229	3559972	3560691	-	putative hydrolase	Probable Hydrogenase expression/formation protein hupH. SIMILARITY:Belongs to the hupH/hyaF family SPROT:P48340: 37%25 identity%2C 54%25 similarity InterPro: IPR002725%3B DUF45. Pfam: PF01863%3B DUF45 Nonsecretory protein (Signal P predicted) No transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity	gene	gene3285	http://www.ncbi.nlm.nih.gov/gene/?term=azo3229
azo3230	azo3230		azo3230	3560730	3561479	-	conserved hypothetical protein	Probable Hypothetical protein Ta0487. trembl:Q7W4W1:50%25 identity%2C 62%25 similarity InterPro:IPR001453%3B MoCF_biosynth. Pfam: PF00994%3B MoCF_biosynth%3B 1. Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon molyb_syn: molybdenum cofactor synthe No signal peptide. No transmembrane helices%3B~Function unclear	gene	gene3286	http://www.ncbi.nlm.nih.gov/gene/?term=azo3230
azo3231	azo3231		azo3231	3561476	3562246	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA4352 of Azoarcus sp. EbN1 of 31%25 (gnl|keqq|eba:ebA4352(KEGG)). Has PF04401%2C Protein of unknown function (DUF540)%3B IPR007496 DUF540%3B Uncharacterised bacterial integral membrane protein%2Cpossibly involved in cysteine biosynthesis. Speculated to be involved in sulphate transport. no signal peptide. 6 TMHs%3B~Conserved hypothetical protein	gene	gene3287	http://www.ncbi.nlm.nih.gov/gene/?term=azo3231
azo3232	azo3232	ffh	ffh	3562254	3563612	-	signal recognition particle protein	Signal recognition particle protein (Fifty-four homolog) (P48). NECESSARY FOR EFFICIENT EXPORT OF EXTRA-CYTOPLASMIC PROTEINS. BINDS TO THE SIGNAL SEQUENCE WHEN IT EMERGES FROM THE RIBOSOMES.The protein has a two domain structure: the G-domain binds GTP%3B the M-domain binds the RNA and also binds the signal sequence. It belongs to the GTP-binding SRP family. InterPro: Signal recognition particle protein 3a0501s01: signal recognition particl Pfam: SRP54-type protein (GTPase domain)%3B signal peptide binding domain no TMHs and signal peptide%3B~High confidence in function and specificity	gene	gene3288	http://www.ncbi.nlm.nih.gov/gene/?term=azo3232
azo3233	azo3233		azo3233	3563665	3564489	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ne1459 of N. europaea of 49%25 (trembl|Q82UM4). Pfam: Cytochrome C assembly protein. no signal peptide. 8 TMHs%3B~Conserved hypothetical protein	gene	gene3289	http://www.ncbi.nlm.nih.gov/gene/?term=azo3233
azo3234	azo3234	pilB2	pilB2	3564593	3566311	+	pilus biogenesis protein	Pilus assembly protein PilB is a component of the pilus biogenesis apparatus%2C%3B~High confidence in function and specificity	gene	gene3290	http://www.ncbi.nlm.nih.gov/gene/?term=azo3234
azo3235	azo3235	pilC	pilC	3566331	3567566	+	type 4 pilus biogenesis protein	Pilus assembly protein PilC is a component of the pilus biogenesis apparatus%2C similarity to pir|B35384 (50%25). This apparatus is responsible for the stabilization%2C translocation and assembly of the monomeric pilin subunits into the pilus organelle. InterPro (IPR001992): Bacterial type II secretion system protein. InterPro (IPR003004): Bacterial general secretion pathway protein F Pfam (PF00482): Bacterial type II secretion system protein TMHMM reporting three TMH%3B~High confidence in function and specificity	gene	gene3291	http://www.ncbi.nlm.nih.gov/gene/?term=azo3235
azo3236	azo3236	pilD	pilD	3567612	3568463	+	prepilin peptidase	PilD is a prepilin peptidase processes the N-terminus of the prepilins. The processing is essential for the correct formation of the pseudopili of type IV bacterial protein secretion. Similar to pir|A39131 (58%25). InterPro(PF01478): Prepilin cysteine protease (C20)%2C type IV InterPro (PR00864): Prepilin cysteine protease (C20)%2Ctype IV TMHMM reporting six TMH.%3B~High confidence in function and specificity	gene	gene3292	http://www.ncbi.nlm.nih.gov/gene/?term=azo3236
azo3237	azo3237		azo3237	3568611	3568871	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to BB0113 of B.bronchiseptica of 56%25 (trembl:Q7WR44). No domas predicted. No TMHs. No signal peptide.	gene	gene3293	http://www.ncbi.nlm.nih.gov/gene/?term=azo3237
azo3238	azo3238		azo3238	3568884	3569510	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C 57%25 identity to TrEMBL%3BQ7W002. Has PF04367%2C Protein of unknown function (DUF502)%3BIPR007462%3B Predicted to be an integral membrane protein. Signal Peptide present. 1 TMHs.%3B~Conserved hypothetical protein	gene	gene3294	http://www.ncbi.nlm.nih.gov/gene/?term=azo3238
azo3239	azo3239	aspS	aspS	3569566	3571365	+	AspS protein	Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS).%3B~High confidence in function and specificity	gene	gene3295	http://www.ncbi.nlm.nih.gov/gene/?term=azo3239
azo3240	azo3240		azo3240	3571506	3573158	+	putative response regulator containing a tpr-domain	Putative response regulator%2C%3B~Conserved hypothetical protein	gene	gene3296	http://www.ncbi.nlm.nih.gov/gene/?term=azo3240
azo3241	azo3241		azo3241	3573175	3573540	+	ribonuclease	InterPro: Guanine-specific ribonuclease N1 and T1%3B~Family membership	gene	gene3297	http://www.ncbi.nlm.nih.gov/gene/?term=azo3241
azo3242	azo3242		azo3242	3573537	3573992	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to XCC2280 of X.campestris of 33%25 (trembl:Q8P8G2). No domains predicted. No signal Peptide present. No TMH present.	gene	gene3298	http://www.ncbi.nlm.nih.gov/gene/?term=azo3242
azo3243	azo3243	hsp18	hsp18	3574142	3574567	+	putative small heat shock protein	Putative small heat shock protein. Homology to hsp18 of C. acetobutylicum of 35%25 (sprot|HS18_CLOAB) InterPro: Heat shock hsp20 (alpha crystallin) proteins family (IPR002068) Pfam: Hsp20/alpa cystallin family no signal peptide no TMHs%3B~Function unclear	gene	gene3299	http://www.ncbi.nlm.nih.gov/gene/?term=azo3243
azo3244	azo3244	argB	argB	3574680	3575582	+	ArgB protein	Acetylglutamate kinase (NAG kinase) is part of the pathway that leads from glutamate to arginine. In lower organisms this pathway employs eight steps%2C starting with the acetylation of glutamate to form NAG. Similar to sprot|ARGB_CHRVO (71%25) and to sprot|ARGB_PSEAE (61%25). TIGRfam (TIGR00761): Acetylglutamate kinase%2C argB Pfam (PF00696): Aspartokinase superfamily%3B~High confidence in function and specificity	gene	gene3300	http://www.ncbi.nlm.nih.gov/gene/?term=azo3244
azo3245	azo3245		azo3245	3575587	3576747	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA4328 of Azoarcus sp. EbN1 of 59%25 (gnl|keqq|eba:ebA4328(KEGG)). no domains predicted. signal peptide. TMH in signal peptide	gene	gene3301	http://www.ncbi.nlm.nih.gov/gene/?term=azo3245
azo3246	azo3246	fadD4	fadD4	3576895	3578475	+	Long-chain-fatty-acid-CoA ligase	Esterification%2C concomitant with transport%2C of exogenous long-chain fatty acids into metabolically active coa thioesters for subsequent degradation or incorporation into phospholipids%2C TREMBL:Q8UET3 (39%25 identity)%3B TREMBL:Q988H2 (38%25 identity). InterPro (IPR000873): AMP-dependent synthetase and ligase Pfam (PF00501): AMP-binding enzyme.%3B~High confidence in function and specificity	gene	gene3302	http://www.ncbi.nlm.nih.gov/gene/?term=azo3246
azo3247	azo3247	asn	asn	3578572	3580368	+	probable asparagine synthase	Asparagine synthase catalyze the conversion of aspartate to asparagine. Similar to trembl|Q82VG1 (45%25) and to trembl|Q7USD1 (27%25). Pfam (PF00733): Asparagine synthase%3B~Family membership	gene	gene3303	http://www.ncbi.nlm.nih.gov/gene/?term=azo3247
azo3248	azo3248	lysA1	lysA1	3580380	3581663	+	probable diaminopimelate decarboxylase	Diaminopimelate decarboxylase%2C%3B~Specificity unclear	gene	gene3304	http://www.ncbi.nlm.nih.gov/gene/?term=azo3248
azo3249	azo3249		azo3249	3581684	3582433	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homolgy to ne2159 of N. europaea of 33%25 (trembl|Q82SY7). InterPro: TPR repeat (IPR001440). Pfam: TPR domain signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene3305	http://www.ncbi.nlm.nih.gov/gene/?term=azo3249
azo3250	azo3250		azo3250	3582430	3583287	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne2161 of N. europaea of 45%25 (trembl|Q82SY5). Interpro: Esterase/lipase/thioesterase family. no damians predicted. no signal peptide. no TMHs.	gene	gene3306	http://www.ncbi.nlm.nih.gov/gene/?term=azo3250
azo3251	azo3251		azo3251	3583284	3584120	-	conserved hypothetical protein	Probable Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase) (Adenylyl cyclase). TREMBL:Q82SY4:40%25 identity%2C 57%25 similarity. InterPro:IPR000379%3B Ser_estrs Pfam:UPF0007:Uncharacterized protein family UPF000 thiE: thiamine-phosphate pyrophosphorylas No transmembrane helices%3B~Function unclear	gene	gene3307	http://www.ncbi.nlm.nih.gov/gene/?term=azo3251
azo3252	azo3252		azo3252	3584127	3584411	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne2163 of N. europaea of 42%25 (trembl|Q82SY3). Pfam: Poshpopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. no signal peptide. no TMHS	gene	gene3308	http://www.ncbi.nlm.nih.gov/gene/?term=azo3252
azo3253	azo3253		azo3253	3584536	3585771	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Mmc102002678 of Magnetococcus sp. MC-1 of 44%25 (gi|48831833|ref|ZP_00288884.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.	gene	gene3309	http://www.ncbi.nlm.nih.gov/gene/?term=azo3253
azo3254	azo3254		azo3254	3585774	3586460	+	hypothetical protein predicted by Glimmer/Critica	May be related to biosynthesos of cell surface carbohydrates / polysaccharides.	gene	gene3310	http://www.ncbi.nlm.nih.gov/gene/?term=azo3254
azo3255	azo3255		azo3255	3586547	3588568	+	acyltransferase	Specificity unclear	gene	gene3311	http://www.ncbi.nlm.nih.gov/gene/?term=azo3255
azo3256	azo3256		azo3256	3588679	3590055	+	conserved hypotheitcal polysaccharide biosynthesis protein	Conserved hypothetical polysaccharide biosynthesis protein%2C related to GumJ. Homology to ebA4295 of Azoarcus sp. EbN1 of 42%25. Pfam: Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis SP5B_BACSU%2C which is involved in spore cortex biosynthesis. No signal peptide. 10 TMHs.%3B~Family membership	gene	gene3312	http://www.ncbi.nlm.nih.gov/gene/?term=azo3256
azo3257	azo3257		azo3257	3590109	3591152	+	polysaccharide polymerase	Similar to putative exopolysaccharide polymerization protein PssK%3B~Family membership	gene	gene3313	http://www.ncbi.nlm.nih.gov/gene/?term=azo3257
azo3258	azo3258		azo3258	3591156	3592049	+	glycosyltransferase	InterPro: Glycosyl transferase family 2%3B~Function unclear	gene	gene3314	http://www.ncbi.nlm.nih.gov/gene/?term=azo3258
azo3259	azo3259		azo3259	3592004	3592930	-	glycosyltransferase	InterPro: Glycosyl transferase family 2%3B~Specificity unclear	gene	gene3315	http://www.ncbi.nlm.nih.gov/gene/?term=azo3259
azo3260	azo3260		azo3260	3593146	3594084	+	glycosyltransferase	InterPro: Glycosyl transferase family 2%3B~Specificity unclear	gene	gene3316	http://www.ncbi.nlm.nih.gov/gene/?term=azo3260
azo3261	azo3261		azo3261	3594077	3595309	+	glycosyltransferase	Putative glycosyl transferase ypjH (EC 2.-.-.-). TIGR00022: conserved hypothetical pro%3B~Specificity unclear	gene	gene3317	http://www.ncbi.nlm.nih.gov/gene/?term=azo3261
azo3262	azo3262		azo3262	3595306	3596340	+	glycosyltransferase	Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-). InterPro: Glycosyl transferases group 1%3B~Specificity unclear	gene	gene3318	http://www.ncbi.nlm.nih.gov/gene/?term=azo3262
azo3263	azo3263		azo3263	3596367	3597584	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. signal peptide present.	gene	gene3319	http://www.ncbi.nlm.nih.gov/gene/?term=azo3263
azo3264	azo3264		azo3264	3597597	3599087	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology RB4730 of Rhodopirellula baltica of 36%25 (trembl|Q7US36). No domains predicted. Signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene3320	http://www.ncbi.nlm.nih.gov/gene/?term=azo3264
azo3265	azo3265		azo3265	3599098	3600003	-	glycosyltransferase	Similar to a gene annotaed to encode a dolichol-phosphate mannosyltransferase%2C a glycosyltransferase that transfers a suga directly to a lipid carrier. InterPro: Glycosyl transferase family 2%3B~Specificity unclear	gene	gene3321	http://www.ncbi.nlm.nih.gov/gene/?term=azo3265
azo3266	azo3266		azo3266	3600066	3601037	-	conserved hypothetical polysaccharide deacetylase	Conserved hypothetical polysacchacride deacetylase. Homology to N. europaea of N. europaea of 54%25 (trembl|Q82W49(SRS)). This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast%2C and endoxylanases which hydrolyses glucosidic bonds in xylan. InterPro:IPR002509%3B Polysac_deacet. Pfam:PF01522%3B Polysacc_deac_1%3B 1. no TMHs no signal peptide%3B~Conserved hypothetical protein	gene	gene3322	http://www.ncbi.nlm.nih.gov/gene/?term=azo3266
azo3267	azo3267		azo3267	3601034	3602380	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RferDRAFT_3275 of Rhodoferax ferrireducens of 46%25. Pfam: O-Antigen Polymerase. This group of bacterial proteins is involved in the synthesis of O-antigen%2C a lipopolysaccharide found in the outer membrane in gram-negative bacteria. The enzyme is coded for by the gene wzy which is part of the O-antigen gene cluster. No signal peptide. 9 TMHs.%3B~Family membership	gene	gene3323	http://www.ncbi.nlm.nih.gov/gene/?term=azo3267
azo3268	azo3268		azo3268	3602380	3603606	-	glycosyltransferase	InterPro: Glycosyl transferases group 1%3B~Specificity unclear	gene	gene3324	http://www.ncbi.nlm.nih.gov/gene/?term=azo3268
azo3269	azo3269	algD	algD	3603654	3604970	-	GDP-mannose 6-dehydrogenase	[EC:1.1.1.132] %2C UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).%2CUDP-glucose/GDP-mannose dehydrogenase%2C UDP-glucose/GDP-mannose dehydrogenase family%2C NAD binding domain%3B~High confidence in function and specificity	gene	gene3325	http://www.ncbi.nlm.nih.gov/gene/?term=azo3269
azo3270	azo3270		azo3270	3604967	3606178	-	glycosyltransferase	InterPro: Glycosyl transferases group 1%3B~Specificity unclear	gene	gene3326	http://www.ncbi.nlm.nih.gov/gene/?term=azo3270
azo3271	azo3271	asnB1	asnB1	3606175	3608103	-	probable asparagine synthetase	Asparagine synthetase B catalyzes the assembly of asparagine from aspartate%2C Mg(2+)ATP%2C and glutamine. Similar to trembl|Q7USD1 (35%25) and to sprot|ASNB_BACSU (30%25). Pfam (PF00310): Glutamine amidotransferase class-II Pfam (PF00733): Asparagine synthase%3B~Specificity unclear	gene	gene3327	http://www.ncbi.nlm.nih.gov/gene/?term=azo3271
azo3272	azo3272		azo3272	3608105	3609364	-	glycosyltransferase	InterPro: Glycosyl transferases group 1%3B~Specificity unclear	gene	gene3328	http://www.ncbi.nlm.nih.gov/gene/?term=azo3272
azo3273	azo3273	asnB2	asnB2	3609333	3611267	-	probable asparagine synthetase	Asparagine synthetase B catalyzes the assembly of asparagine from aspartate%2C Mg(2+)ATP%2C and glutamine. Similar to trembl|Q81ZU7 (64%25) and to trembl|Q7USD1 (37%25). Pfam (PF00310): Glutamine amidotransferase class-II Pfam (PF00733): Asparagine synthase%3B~Specificity unclear	gene	gene3329	http://www.ncbi.nlm.nih.gov/gene/?term=azo3273
azo3274	azo3274		azo3274	3611287	3612462	-	glycosyltransferase	InterPro: Glycosyl transferases group 1%3B~Specificity unclear	gene	gene3330	http://www.ncbi.nlm.nih.gov/gene/?term=azo3274
azo3275	azo3275		azo3275	3612459	3614009	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to NE1797 of Nitrosomonas europaea of 33%25 (trembl|Q82TS7(SRS)). no domains predicted. signal peptide. 7 TMHs%3B~Conserved hypothetical protein	gene	gene3331	http://www.ncbi.nlm.nih.gov/gene/?term=azo3275
azo3276	azo3276		azo3276	3614065	3615168	-	conserved hypothetical protein	Possibly related to cell surface polysaccharide biosynthesis%2C due to the presence of the gene in a polysaccharide synthesis gene cluster.%3B~Function unclear	gene	gene3332	http://www.ncbi.nlm.nih.gov/gene/?term=azo3276
azo3277	azo3277		azo3277	3615137	3615997	-	conserved hypothetical protein	62%25 Myb_DNA_binding.IPR002509%3B Polysac_deacet. Pfam:PF01522%3B Polysacc_deac_1%3B 1.	gene	gene3333	http://www.ncbi.nlm.nih.gov/gene/?term=azo3277
azo3278	azo3278	mnaA	mnaA	3615997	3617154	-	UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) (UDP-GlcNAc-2- epimerase). Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP-N-acetylmannosamine (UDP-ManNAc) the activated donor of ManNAc residues (By similarity). InterPro: UDP-N-acetylglucosamine 2-epimerase%3B~High confidence in function and specificity	gene	gene3334	http://www.ncbi.nlm.nih.gov/gene/?term=azo3278
azo3279	azo3279	gspA	gspA	3617151	3618224	-	MSHA biogenesis protein MshM	General secretion pathway protein A. Involved in a general secretion pathway (GSP) for the export of proteins. InterPro: AAA ATPase superfamily POssibly related to the biosynthesis of cell surface polysaccharide due to the presence of the gene in a polysaccharide synthesis gene cluster.%3B~High confidence in function and specificity	gene	gene3335	http://www.ncbi.nlm.nih.gov/gene/?term=azo3279
azo3280	azo3280		azo3280	3618237	3619733	-	conserved hypothetical protein		gene	gene3336	http://www.ncbi.nlm.nih.gov/gene/?term=azo3280
azo3281	azo3281	wzc2	wzc2	3619774	3620715	-	protein-tyrosine kinase	Putative tyrosine-protein kinase (EC 2.7.10.1).%3B~High confidence in function and specificity	gene	gene3337	http://www.ncbi.nlm.nih.gov/gene/?term=azo3281
azo3282	azo3282		azo3282	3620729	3622273	-	conserved hypothetical polysaccharide chain length determinant protein	Conserved hypothetical polysaccharide chain length determinant protein. Homology to ebA4249 of Azoarcus sp. EbN1 of 66%25. No signal peptide. 3 TMHS. Pfam: Wzz %3D Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases such as ETK_ECOLI.%3B~Family membership	gene	gene3338	http://www.ncbi.nlm.nih.gov/gene/?term=azo3282
azo3283	azo3283	wza	wza	3622352	3622981	-	conserved hypothetical polysaccharide export protein	Conserved hypothetical polysaccharid export protein. Homology to wza of Azoarcus sp. EbN1 of 80%25. Pfam: Polysaccharide biosynthesis/export protein. This is a family of periplasmic proteins involved in polysaccharide biosynthesis and/or export. No TMHs. Signal peptide present.%2C %2C%3B~Family membership	gene	gene3339	http://www.ncbi.nlm.nih.gov/gene/?term=azo3283
azo3284	azo3284		azo3284	3623219	3623971	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne2229 of N. europaea of 38%25 (trembl|Q82SS7). no domains predicted. no signal peptide. no TMHs.	gene	gene3340	http://www.ncbi.nlm.nih.gov/gene/?term=azo3284
azo3285	azo3285		azo3285	3623979	3625292	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to NE2243 of Nitrosomonas europaea of 43%25 (trembl|Q82SR4(SRS). No domains predicted. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene3341	http://www.ncbi.nlm.nih.gov/gene/?term=azo3285
azo3286	azo3286		azo3286	3625296	3626045	-	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q82SR3 (67%25 identity)%3B TREMBL:Q92NU9 (48%25 identity)%3B SWISSPROT:Q58206 (45%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership	gene	gene3342	http://www.ncbi.nlm.nih.gov/gene/?term=azo3286
azo3287	azo3287		azo3287	3626090	3626872	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to NE2245 of Nitrosomonas europaea of 51%25 (tremble:Q82SR2). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene3343	http://www.ncbi.nlm.nih.gov/gene/?term=azo3287
azo3288	azo3288		azo3288	3626917	3627633	+	exonuclease of the beta-lactamase fold involved in RNA processing	Putative exonuclease of the beta-lactamase fold involved in RNA processing%2C N-terminal fragment.%3B~Family membership	gene	gene3344	http://www.ncbi.nlm.nih.gov/gene/?term=azo3288
azo3289	azo3289		azo3289	3627672	3628322	+	exonuclease of the beta-lactamase fold involved in RNA processing	Putative exonuclease of the beta-lactamase fold involved in RNA processing%2C C-terminal fragment%3B~Family membership	gene	gene3345	http://www.ncbi.nlm.nih.gov/gene/?term=azo3289
azo3290	azo3290		azo3290	3628428	3629525	-	outer membrane porin protein precursor	Major outer membrane protein P.IB precursor (Protein IB) (PIB) (Porin). Serves as a slightly cation selective porin. InterPro: General diffusion Gram-negative porins L12: ribosomal protein L7/L12%3B~Function unclear	gene	gene3346	http://www.ncbi.nlm.nih.gov/gene/?term=azo3290
azo3291	azo3291		azo3291	3629820	3630890	-	outer membrane porin protein precursor	Outer membrane porin protein 32 precursor (OMP32). Forms anion selective channels. InterPro: General diffusion Gram-negative porins 2A0310: amino acid permease (yeast)%3B~Function unclear	gene	gene3347	http://www.ncbi.nlm.nih.gov/gene/?term=azo3291
azo3292	azo3292	rpoH	rpoH	3631171	3632025	+	RNA polymerase sigma-32 factor	RNA polymerase sigma-32 factor. THE SIGMA FACTOR IS AN INITIATION FACTOR THAT PROMOTES ATTACHMENT OF THE RNA POLYMERASE TO SPECIFIC INITIATION SITES AND THEN IS RELEASED. THIS SIGMA FACTOR IS RESPONSIBLE FOR THE EXPRESSION OF HEAT SHOCK PROMOTERS. Similar to SWISSPROT: sprot|RP32_PSEAE (54%25 Pseudomonas aeruginosa%2C RNA polymerase sigma-32 factor) / sprot|RP32_ECOLI (51%25 Escherichia coli%2C RNA polymerase sigma-32 factor (heat shock regulatory protein f33.4)) InterPro: IPR009043 RNA polymerase%2C sigma subunit. Pfam: PF00140 Sigma-70 factor. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene3348	http://www.ncbi.nlm.nih.gov/gene/?term=azo3292
azo3293	azo3293	senC	senC	3632080	3632682	-	SCO1/SenC family protein	SCO2 protein homolog mitochondrial precursor. Acts as a copper chaperone transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2). InterPro: SCO1/SenC TREMBL:Q8Y2G3: 56%25 identity%2C 74%25 similarity InterPro:IPR003782%3B SCO1_SenC. Pfam: PF02630%3B SCO1-SenC dsbE: periplasmic protein thiol:disulf Presence of signal peptide (SignalP predicted) No TMH's present%3B~Family membership	gene	gene3349	http://www.ncbi.nlm.nih.gov/gene/?term=azo3293
azo3294	azo3294	coxD	coxD	3632697	3633596	-	putative protoheme IX farnesyltransferase	Putative protoheme IX farnesyltransferase (EC 2.5.1.-). Homology to coxD of Synechocystis sp of 39%25 (trembl|Q55207) Converts protoheme IX and farnesyl diphosphate to heme O (By similarity). InterPro: UbiA prenyltransferase (IPR000537) Pfam: UbiA prenyltransferase family no signalpeptide 9 TMHS%3B~High confidence in function and specificity	gene	gene3350	http://www.ncbi.nlm.nih.gov/gene/?term=azo3294
azo3295	azo3295		azo3295	3633593	3634636	-	putative Cytochrome aa3 oxidase assembly protein	Putative Cytochrome aa3 oxidase assembly protein%2C42%25 Identity to TrEMBL%3BQ7P0G1%2C Q62F60. Has PF02628%2CCytochrome oxidase assembly protein%3B IPR003780%2CCOX15_CtaA%3B This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast (P40086).	gene	gene3351	http://www.ncbi.nlm.nih.gov/gene/?term=azo3295
azo3296	azo3296		azo3296	3634633	3635286	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS03338 of Ralstonia solanacearum of 36%25 (trembl|Q8Y2G6(SRS)). No domains predicted. No signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene3352	http://www.ncbi.nlm.nih.gov/gene/?term=azo3296
azo3297	azo3297		azo3297	3635261	3635983	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to NE1012 of N.europaea of 31%25 (tremble:Q82VQ4). No domains predicted. Signal peptide present. No TMHs%3B~Conserved hypothetical protein	gene	gene3353	http://www.ncbi.nlm.nih.gov/gene/?term=azo3297
azo3298	azo3298		azo3298	3636032	3636226	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rs0336 of R. solanacearum of 53%25 (trembl|Q8Y2G8(SRS)). no domains predicted. signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene3354	http://www.ncbi.nlm.nih.gov/gene/?term=azo3298
azo3299	azo3299	coxC	coxC	3636240	3637091	-	Cytochrome-c oxidase	Cytochrome c oxidase polypeptide III Subunits I II and III form the functional core of the enzyme complex. InterPro: Cytochrome c oxidase subunit III%3B~High confidence in function and specificity	gene	gene3355	http://www.ncbi.nlm.nih.gov/gene/?term=azo3299
azo3300	azo3300		azo3300	3637132	3637332	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C 73%25 similarity to TrEMBL%3BQ7WE10%2CPutative membrane protein [BB4828] [Bordetella bronchiseptica(Alcaligenes bronchisepticus). no signal peptide. 1 TMHs	gene	gene3356	http://www.ncbi.nlm.nih.gov/gene/?term=azo3300
azo3301	azo3301	coxG	coxG	3637322	3637897	-	CoxG protein	Cytochrome c oxidase assembly protein ctaG. Exerts its effect at some terminal stage of cytochrome c oxidase synthesis probably by being involved in the insertion of the copper B into subunit I (By similarity).%3B~High confidence in function and specificity	gene	gene3357	http://www.ncbi.nlm.nih.gov/gene/?term=azo3301
azo3302	azo3302		azo3302	3637894	3638010	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rsc0364 of R. solanacearum of 42%25 (trembl|Q8Y2H2) no domains predicted no signal peptide 1 TMHs%3B~Conserved hypothetical protein	gene	gene3358	http://www.ncbi.nlm.nih.gov/gene/?term=azo3302
azo3303	azo3303	coxA	coxA	3638035	3639612	-	probable cytochrome c oxidase%2C subunit I	Probable cytochrome c oxidase%2C subunit I (EC 1.9.3.1) (Cytochrome AA3 subunit 1). Homology to coxA of B. japonicum of 55%25 (sprot|COX1_BRAJA(SRS)) cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. subunits 1- 3 form the functional core of the enzyme complex. co i is the catalytic subunit of the enzyme. electrons originating in cytochrome c are transferred via the copper a center of subunit 2 and heme a of subunit 1 to the bimetallic center formed by heme a3 and copper b. Pfam: Cytochrome c and quinol oxidase polypeptide no signal peptide 12 TMHs%3B~High confidence in function and specificity	gene	gene3359	http://www.ncbi.nlm.nih.gov/gene/?term=azo3303
azo3304	azo3304	coxB	coxB	3639657	3640799	-	conserved hypothetical cytochrome c oxidase%2Csubunit II	Conserved hypothetical cytochrome c oxidase%2Csubunit II. Homology to bb4831 of B. bronchiseptica of 60%25 (trembl|Q7WE07). SUBUNIT I AND II FORM THE FUNCTIONAL CORE OF THE ENZYME COMPLEX. ELECTRONS ORIGINATING IN CYTOCHROME C ARE TRANSFERRED VIA HEME A AND CU(A) TO THE BINUCLEAR CENTER FORMED BY HEME A3 AND CU(B). InterPro: Cytochrome c oxidase subunit II (IPR002429)%3B cytochrome c%2C class IC (IPR008168)%3B cytochrome%2C class I (IPR003088)%3B Cu(A) centre of cytochrome coxidase%2C subunit II and nitrous oxide reductase (IPR001505) Pfam: Cytochrome c oxidase subunit II%2C transmembran domain%3B cytochrome c oxidase subunit II%2Cperiplasmic domain%3B cytochrome c Tirgfam: ccoP: cytochrome c oxidase cbb3-type signal peptide 2 TMHs%3B~Conserved hypothetical protein	gene	gene3360	http://www.ncbi.nlm.nih.gov/gene/?term=azo3304
azo3305	azo3305	waaE1	waaE1	3641189	3641698	-	ADP-heptose synthase	ADP-heptose synthase (EC 2.7.-.-). cyt_tran_rel: cytidyltransferase-related%3B~High confidence in function and specificity	gene	gene3361	http://www.ncbi.nlm.nih.gov/gene/?term=azo3305
azo3306	azo3306		azo3306	3641777	3643381	-	conserved hypothetical membrane protein	Conserved hypothetical Na+-dependent phosphate transporter protein. Homolg to Bacteroides thetaiotaomicron. TREMBL:Q8A4R9 InterPro:IPR003841%3B Na/Pi_cotranspt.IPR004633%3B NaPi_cotransptII. Pfam:PF02690%3B Na_Pi_cotrans%3B 1. SignalP: present TMhelix:8 present. InterPro: Na+/Pi-cotransporter NaPi_cotrn_rel: Na/Pi cotransporter II Hypothetical protein yjbB.%3B~Specificity unclear	gene	gene3362	http://www.ncbi.nlm.nih.gov/gene/?term=azo3306
azo3307	azo3307	cat1	cat1	3643550	3645082	-	probable coenzyme A transferase	Probable coenzyme A transferase. Homology to cat1 of C. kluyveri of 51%25 (sprot|CAT1_CLOKL). Pfam: Acetyl-CoA hydrolase/transferase no signal peptide no TMHs tal_mycobact: transaldolase%3B~Family membership	gene	gene3363	http://www.ncbi.nlm.nih.gov/gene/?term=azo3307
azo3308	azo3308		azo3308	3645353	3646273	-	putative MerR-family transcriptional regulator	Putative MerR-family transcriptional regulator. InterPro: IPR000551 HTH_MerR. HTH reporting nucleic acid binding motif. h_aconitase: homoaconitase	gene	gene3364	http://www.ncbi.nlm.nih.gov/gene/?term=azo3308
azo3309	azo3309		azo3309	3646563	3647906	+	conserved hypothetical amine oxidoreductase	Conserved hypothetical amine oxidoreductase. Homology to atu1977 of A. tumefaciens of 47%25 (trembl|Q8UDY9). Pfam: Flavine containing amine oxidoreductase no signal peptide 1 TMHs%3B~Conserved hypothetical protein	gene	gene3365	http://www.ncbi.nlm.nih.gov/gene/?term=azo3309
azo3310	azo3310		azo3310	3647986	3648756	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3225 of C.violaceum of 50%25 (trembl:Q7NPR5). Has PF07103%2CProtein of unknown function (DUF1365)%3BIPR010775 %3BThis family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown. No signal peptide or TMH present.	gene	gene3366	http://www.ncbi.nlm.nih.gov/gene/?term=azo3310
azo3311	azo3311	cfaA	cfaA	3648753	3650036	+	cyclopropane-fatty-acyl-phospholipid synthase	Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase). InterPro: Cyclopropane-fatty-acyl-phospholipid synthase%3B~High confidence in function and specificity	gene	gene3367	http://www.ncbi.nlm.nih.gov/gene/?term=azo3311
azo3312	azo3312		azo3312	3650039	3650623	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PP2729 of P.putida of 36%25 (tremble:Q88JC0). No domains predicted. Signal peptide present. NO TMH reported present.%3B~Conserved hypothetical protein	gene	gene3368	http://www.ncbi.nlm.nih.gov/gene/?term=azo3312
azo3313	azo3313		azo3313	3650639	3651958	+	putative symporter protein	Integral membrane protein.Belongs to the Na/galactoside symporter family. 20%25 MFS.IPR001927%3B Na/Gal_symport. TIGRFAMs:TIGR00792%3B gph%3B 1. TMHelix:12.%3B~Function unclear	gene	gene3369	http://www.ncbi.nlm.nih.gov/gene/?term=azo3313
azo3314	azo3314		azo3314	3651955	3652512	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PP2730 of P.putida of 48%25 (tremble:Q88JB9). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene3370	http://www.ncbi.nlm.nih.gov/gene/?term=azo3314
azo3315	azo3315		azo3315	3652517	3653299	+	Short-chain dehydrogenase family protein	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q92PV6 (39 %25 identity)%3B TREMBL:Q88JB2 (33%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear	gene	gene3371	http://www.ncbi.nlm.nih.gov/gene/?term=azo3315
azo3316	azo3316		azo3316	3653304	3653753	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to CV3228 of C.violaceum of 40%25 (trembl:Q7NT36). No domains predicted. No Signal peptide present. No TMH reported present.	gene	gene3372	http://www.ncbi.nlm.nih.gov/gene/?term=azo3316
azo3317	azo3317	yhdH	yhdH	3653743	3654726	-	zinc-binding alcohol dehydrogenase	TREMBL:Q881C6:69%25 identity%3B 83%25 similarity. Alcohol dehydrogenase (EC: 1.1.1.1) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD: Ethanol + NAD %3D Acetaldehyde + NADH Protein yhdH. InterPro:IPR002085%3B Adh_zn_family. Pfam:PF00107%3B ADH_zinc_N%3B FAD binding domain InterPro: Zinc-containing alcohol dehydrogenase superfamily TIGRFAM:tdh: L-threonine 3-dehydrogenase%3B~High confidence in function and specificity	gene	gene3373	http://www.ncbi.nlm.nih.gov/gene/?term=azo3317
azo3318	azo3318	recQ	recQ	3654928	3656775	+	ATP-dependent DNA helicase	ATP-dependent DNA helicase recQ (EC 3.6.1.-). INVOLVED IN THE RECF RECOMBINATION PATHWAY%3B ITS GENE EXPRESSION IS UNDER THE REGULATION OF THE SOS SYSTEM. IT IS A DNA HELICASE. recq: ATP-dependent DNA helicase RecQ.%3B~High confidence in function and specificity	gene	gene3374	http://www.ncbi.nlm.nih.gov/gene/?term=azo3318
azo3319	azo3319	fkbP	fkbP	3656851	3657195	-	peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase. Homology to fkbP of N. meningitidis of 69%25 (sprot|FKBP_NEIMB) PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)(IPR001179) Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3375	http://www.ncbi.nlm.nih.gov/gene/?term=azo3319
azo3320	azo3320	msrA	msrA	3657267	3657827	-	putative peptide methionine sulfoxide reductase	Putative peptide methionine sulfoxide reductase. Homology to msrA of E. coli of 37%25 (SWISSPROT:MSRA_ECOLI) Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity). InterPro: Peptide methionine sulfoxide reductase (IPR002569) Pfam: Peptide methionine sulfoxide reductase Tigrfam: msrA: peptide methionine sulfoxide reductase no signal peptide no TMHs%3B~Family membership	gene	gene3376	http://www.ncbi.nlm.nih.gov/gene/?term=azo3320
azo3321	azo3321		azo3321	3657957	3661868	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rsc2383 of R. solanacearum of 31%25 (trembl|Q8XWT7(SRS)). no domains predicted .no signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene3377	http://www.ncbi.nlm.nih.gov/gene/?term=azo3321
azo3322	azo3322	trpC	trpC	3661872	3662666	-	Indole-3-glycerol-phosphate synthase	Indole-3-glycerol phosphate synthase (IGPS). catalytic activity:1-(2-carboxyphenylamino)-1-deoxy-d-ribulose 5-phosphate %3D 1-(indol-3-yl)glycerol 3-phosphate + co(2) + h(2)o. pathway: tryptophan biosynthesis%3B fourth step. InterPro: Indole-3-glycerol phosphate synthase%3B~High confidence in function and specificity	gene	gene3378	http://www.ncbi.nlm.nih.gov/gene/?term=azo3322
azo3323	azo3323	trpD	trpD	3662666	3663703	-	1%2C4-alpha-glucan branching enzyme	Anthranilate phosphoribosyltransferase. catalytic activity: anthranilate + phosphoribosyldiphosphate %3D n-5'-phosphoribosyl-anthranilate + diphosphate. pathway: tryptophan biosynthesis%3B second step. InterPro: Glycosyl transferase family%3B~High confidence in function and specificity	gene	gene3379	http://www.ncbi.nlm.nih.gov/gene/?term=azo3323
azo3324	azo3324	trpG	trpG	3663719	3664306	-	anthranilate synthase	Anthranilate synthase component II (Glutamine amido-transferase). catalytic activity: chorismate + l-glutamine %3D anthranilate + pyruvate + l-glutamate. pathway: tryptophan biosynthesis%3B first step. TIGRFAM: trpG_papA: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase%3B~High confidence in function and specificity	gene	gene3380	http://www.ncbi.nlm.nih.gov/gene/?term=azo3324
azo3325	azo3325	trpE	trpE	3664662	3666134	-	anthranilate synthase	Anthranilate synthase component I. catalytic activity: chorismate + l-glutamine %3D anthranilate + pyruvate + l-glutamate. pathway: tryptophan biosynthesis%3B first step. InterPro: Anthranilate synthase component I and chorismate binding enzyme TIGRFAM: pabB: para-aminobenzoate synthase component I%3B~High confidence in function and specificity	gene	gene3381	http://www.ncbi.nlm.nih.gov/gene/?term=azo3325
azo3326	azo3326	cbbZ	cbbZ	3666394	3667065	-	probable phosphoglycolate phosphatase	Phosphoglycolate phosphatase 1 (EC 3.1.3.18) (PGP 1). TREMBL:Q7W391: 50%25 identity%2C 65%25 similarity. catalytic activity: 2-phosphoglycolate + h(2)o %3D glycolate + phosphate. similarity:belongs to the cbby/cbbz/gph/yieh family. InterPro: Haloacid dehalogenase/epoxide hydrolase family InterPro:IPR006402%3B HAD-SF-IA-v3. IPR006439%3B HAD_SF_A_v1. IPR005833%3B Hlgnase/hydrlase. Pfam PF00702%3B Hydrolase%3B 1. PRINTS PR00413%3B HADHALOGNASE. TIGRFAMs:TIGR01549%3B HAD-SF-IA-v1%3B 1 hstdl_phs_rel: histidinol phosphatase-r%3B~High confidence in function and specificity	gene	gene3382	http://www.ncbi.nlm.nih.gov/gene/?term=azo3326
azo3327	azo3327	rpe	rpe	3667075	3667776	-	putative ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase(also known as pentose-5-phosphate 3-epimerase%2C PPE or Rpe)%2C is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. 71%25Ribul_P_3_epim. Pfam:PF00834%3B Ribul_P_3_epim%3B 1. TIGRFAMs:TIGR01163%3B rpe%3B 1.%3B~High confidence in function and specificity	gene	gene3383	http://www.ncbi.nlm.nih.gov/gene/?term=azo3327
azo3328	azo3328		azo3328	3667833	3670193	-	general secretion pathway protein E	General secretion pathway protein E%2C%3B~Specificity unclear	gene	gene3384	http://www.ncbi.nlm.nih.gov/gene/?term=azo3328
azo3329	azo3329		azo3329	3670262	3670960	-	putative 3'%2C5'-cyclic-nucleotide phosphodiesterase	Probable 35-cyclic-nucleotide phosphodiesterase precursor (EC 3.1.4.17) (PDEase) (3:5-CNP). TREMBL:Q8ZD92:28%25 identity%2C 47%25 similarity InterPro%3B IPR001279%3B Blactmase-like. IPR000396%3B Pdiesterase2. Pfam: PF00753%3B Lactamase_B No transmembrane helices TIGR00010: deoxyribonuclease TatD fami%3B~Function unclear	gene	gene3385	http://www.ncbi.nlm.nih.gov/gene/?term=azo3329
azo3330	azo3330		azo3330	3671156	3671920	-	FHA-domain containing protein	Conserved hypothetical protein which may be involved into signal transduction processes. Important Domain: Pfam:PF00498 FHA domain. The forkhead-associated (FHA) domain is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. The domain is present in a diverse range of proteins%2C such as kinases%2C phosphatases%2C kinesins%2C transcription factors%2CRNA-binding proteins and metabolic enzymes.	gene	gene3386	http://www.ncbi.nlm.nih.gov/gene/?term=azo3330
azo3331	azo3331	pppL	pppL	3671969	3672724	-	putative phosphoprotein phosphatase	Putative phosphoprotein phosphatase%2C%3B~Family membership	gene	gene3387	http://www.ncbi.nlm.nih.gov/gene/?term=azo3331
azo3332	azo3332	sucD	sucD	3672838	3673731	-	probable succinyl-CoA synthetase%2C alpha chain	Probable succinyl-CoA synthetase%2C alpha chain. Homology to sucD of E. coli of 54%25 (srot:SUCD_ECOLI) CATALYTIC ACTIVITY: ATP + succinate + CoA %3D ADP + succinyl-CoA + phosphate. Succinyl-CoA is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle%2C coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits InterPro: ATP-citrate lyase/succinyl-CoA ligases (IPR005809) Pfam: CoA binding domain%3B Co-ligase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3388	http://www.ncbi.nlm.nih.gov/gene/?term=azo3332
azo3333	azo3333	sucC	sucC	3673743	3674903	-	probable succinyl-CoA synthetase%2C beta chain	Probable succinyl-CoA synthetase%2C beta chain. Homology to sucC of E. coli of 51%25 (sprot|SUCC_ECOLI) CATALYTIC ACTIVITY: ATP + succinate + CoA %3D ADP + succinyl-CoA + phosphate. Succinyl-CoA is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle%2C coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits Pfam: ATP-grasp domain%3B~High confidence in function and specificity	gene	gene3389	http://www.ncbi.nlm.nih.gov/gene/?term=azo3333
azo3334	azo3334		azo3334	3675151	3675705	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to BP2542 of B.pertussis of 50%25 (trembl:Q7VVU4). No domains predicted. No signal peptide. No TMHs	gene	gene3390	http://www.ncbi.nlm.nih.gov/gene/?term=azo3334
azo3335	azo3335	fimV2	fimV2	3675922	3677832	+	putative type 4 pilus biogenesis	In Pseudomonas aeruginosa%2C FimV is probable involved in remodelling of the peptidoglycan layer to enable assembly of the type IV fimbrial structure and machinery. And it is also required for twitching motility. Similar to trembl|O87015 (26%25). Pfam (PF05489): Phage Tail Protein X SignalP reporting Signal peptide%3B~Function unclear	gene	gene3391	http://www.ncbi.nlm.nih.gov/gene/?term=azo3335
azo3336	azo3336		azo3336	3677837	3678592	-	conserved hypothetical protein	Conserved hypothetical protein%2CybgI%2C 48%25 identity(67%25 similarity) to SwissProt%3BP75743(E.coli)SP|Q8XFW7. SwissProt%3BQ8XVA0(58%25 identity)Ralstonia solanacearum. TrEMBL%3BQ82UH6(53%25 identity)Nitrosomonas europaea. Has PF01784%2C NIF3 (NGG1p interacting factor 3)%3BIPR002678%2C DUF34%3B This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex%2C the exact function of this interaction is unknown.	gene	gene3392	http://www.ncbi.nlm.nih.gov/gene/?term=azo3336
azo3337	azo3337	algW	algW	3678696	3679862	+	probable serine protease AlgW	Probable serine protease AlgW. Homology to algW of P. aeruginosa of 48%25 (trembl|Q51374). InterPro: Serine proteases trypsin family (IPR001254)%3B PDZ domain (Also known as DHR or GLGF) (IPR001478)%3B HtrA/DegQ protease family (IPR001940) Pfam: PDZ domain (Also known as DHR or GLGF)%3B Trypsin no signal peptide 1 TMH%3B~High confidence in function and specificity	gene	gene3393	http://www.ncbi.nlm.nih.gov/gene/?term=azo3337
azo3338	azo3338	tatC	tatC	3679908	3680675	-	probable Sec-independent protein translocase protein	Sec-independent protein translocase protein tatC. Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs)%2C and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic 2a6401s02: Sec-independent periplasmic Pfam: MttB family UPF0032 propable 6 TMHs%2C no signal peptide%3B~High confidence in function and specificity	gene	gene3394	http://www.ncbi.nlm.nih.gov/gene/?term=azo3338
azo3339	azo3339	tatB	tatB	3680681	3681109	-	putative Sec-independent protein translocase protein	Sec-independent protein translocase protein tatB. Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export. no signal peptide probable TMHs: 1 TatB is essential for the secretion of these specific proteins%2C and forms a scaffold upon which TatC assembles in the membrane. Deletion studies have shown that it is crucial in the forming of the TAT complex%2C and is therefore necessary for the correct working of the system.%3B~High confidence in function and specificity	gene	gene3395	http://www.ncbi.nlm.nih.gov/gene/?term=azo3339
azo3340	azo3340	tatA	tatA	3681177	3681410	-	propable Sec-independent protein translocase protein	Sec-independent protein translocase protein tatA/E homolog. Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export (By similarity). InterPro: mttA/Hcf106 family no signal peptide probable TMHs: 1%3B~High confidence in function and specificity	gene	gene3396	http://www.ncbi.nlm.nih.gov/gene/?term=azo3340
azo3341	azo3341		azo3341	3681361	3681534	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene3397	http://www.ncbi.nlm.nih.gov/gene/?term=azo3341
azo3342	azo3342	hisE	hisE	3681597	3681920	-	phosphoribosyl-ATP pyrophosphatase	Phosphoribosyl-ATP pyrophosphatase%2C catalyzes the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O %3D 5-phosphoribosyl-AMP + PPi Similar to sprot|HIS2_PSEAE (51%25) and to sprot|HIS2_AZOBR (43%25). Pfam: PRA-PH%2C Phosphoribosyl-ATP pyrophosphohydrolase%3B~High confidence in function and specificity	gene	gene3398	http://www.ncbi.nlm.nih.gov/gene/?term=azo3342
azo3343	azo3343	hisI	hisI	3681917	3682312	-	HisI protein	Phosphoribosyl-AMP cyclohydrolase catalyzes the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O %3D 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl)imidazole-4-carboxamide. It requires Zn2+ ions for activity. Similar to sprot|HIS3_RALSO (70%25) and to sprot|HIS3_NITEU (61%25). Pfam: PRA-CH%2C Phosphoribosyl-AMP cyclohydrolase%3B~High confidence in function and specificity	gene	gene3399	http://www.ncbi.nlm.nih.gov/gene/?term=azo3343
azo3344	azo3344	hisF	hisF	3682309	3683067	-	imidazole glycerol phosphate synthase subunit	Imidazole glycerol phosphate synthase subunit%2ChisF. Similar to sprot|HIS6_RALSO (73%25) and to sprot|HIS6_AZOBR (70%25). The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. TIGRFAM: Imidazole glycerol phosphate synthase subunit%2C hisF Pfam: Histidine biosynthesis protein%3B~High confidence in function and specificity	gene	gene3400	http://www.ncbi.nlm.nih.gov/gene/?term=azo3344
azo3345	azo3345	hisA	hisA	3683067	3683822	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase%2C HisA. Similar to sprot|HIS4_RALSO (76%25) and to sprot|HIS4_AZOBR (52%25). Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase%2C involved in the fourth step of histidine biosynthesis. TIGRFAM (TIGR00007): phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Pfam: Histidine biosynthesis protein%3B~High confidence in function and specificity	gene	gene3401	http://www.ncbi.nlm.nih.gov/gene/?term=azo3345
azo3346	azo3346	hisH	hisH	3683868	3684506	-	histidine amidotransferase	Glutamine amidotransferase subunit%2C HisH the imidazole glycerol phosphate synthase (IGPS) which catalyzes the fifth step of the histidine biosynthesis. Similar to sprot|HIS5_RALSO (55%25) and to pir|B83251 (37%25). InterPro (PF00117): Glutamine amidotransferase class-I%3B~High confidence in function and specificity	gene	gene3402	http://www.ncbi.nlm.nih.gov/gene/?term=azo3346
azo3347	azo3347	hisB	hisB	3684561	3685190	-	HisB protein	Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyzes the seventh step in the biosynthesis of histidine in bacteria%2C fungi and plants. Similar to sprot|HIS7_RALSO (73%25) and to sprot|HI7B_ARATH (54%25)and to sprot|HIS7_ECOLI (47%25). Pfam: IGPD%2C Imidazoleglycerol-phosphate dehydratase%3B~Specificity unclear	gene	gene3403	http://www.ncbi.nlm.nih.gov/gene/?term=azo3347
azo3348	azo3348	hisC2	hisC2	3685259	3686347	+	histidinol-phosphate aminotransferase	Histidinol-phosphate aminotransferase%2C hisC. Similar to sprot|HIS8_PSESM (64%25). Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes%2C such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity%2C these various enzymes can be grouped into class I and class II. InterPro (PF00155): Aminotransferase class I and II%3B~High confidence in function and specificity	gene	gene3404	http://www.ncbi.nlm.nih.gov/gene/?term=azo3348
azo3349	azo3349		azo3349	3686429	3687163	-	putative transglycosylase	Similar to phage protein P7. InterPro: SLT domain%3B~Family membership	gene	gene3405	http://www.ncbi.nlm.nih.gov/gene/?term=azo3349
azo3350	azo3350	ampD2	ampD2	3687461	3688036	-	N-acetyl-anhydromuramyl-L-alanine amidase	Putative signaling protein in beta-lactamase regulation. AMPD seems not to act as a direct sensor for beta-lactams. It hydrolyzes 16-anhydro-N-acetylmuramoyl-L-alanyl-D-3glutamyl-meso-diaminopimelic acid to the tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate (By similarity)%2C TREMBL:Q8KRJ4 (63%25 identity)%3B SWISSPROT:P82974 (60%25 identity). Pfam (PF01510): N-acetylmuramoyl-L-alanine amidase.%3B~High confidence in function and specificity	gene	gene3406	http://www.ncbi.nlm.nih.gov/gene/?term=azo3350
azo3351	azo3351		azo3351	3688047	3688952	-	putative ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:O59091 (37%25 identity)%3B TREMBL:Q7NDM5 (40%25 identity). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~High confidence in function and specificity	gene	gene3407	http://www.ncbi.nlm.nih.gov/gene/?term=azo3351
azo3352	azo3352		azo3352	3688949	3689800	-	hypothetical secreted protein	Similar to hypothetical protein GSU1500 of Geobacter sulfurreducens PCA (16%25). TMHMM2 reporting one TMhelix. Sigcleave reporting one SignalPeptide. Coils2 reporting coiled coil region	gene	gene3408	http://www.ncbi.nlm.nih.gov/gene/?term=azo3352
azo3353	azo3353		azo3353	3689807	3690616	-	conserved hypothetical membrane protein	In Myxococcus xanthus pilI are co-transcribed with pilH an ABC transporter homologue required for type IV pilus biogenesis and social gliding. pilI appear to be functionally related to pilH. Similar to membrane protein of Geobacter sulfurreducens PCA (14%25) and weak%3B~Conserved hypothetical protein	gene	gene3409	http://www.ncbi.nlm.nih.gov/gene/?term=azo3353
azo3354	azo3354	pilB	pilB	3690780	3691208	-	Type IV pilus assembly protein	PilB encodes for a 14.2 kDa polypeptide showing similarity to FimF%2C a component of type I fimbriae of E. coli. It may be part of the pilus assembly complex or the pilus itself. (Reference: Doerr et al.%2C 1998 Molecular Microbiology)%3B~Specificity unclear	gene	gene3410	http://www.ncbi.nlm.nih.gov/gene/?term=azo3354
azo3355	azo3355	pilA	pilA	3691277	3691456	-	tfp structural protein	PilA encodes an unusually short (6.4 kDa)putative pilin precursor showing 100%25 sequence identity to the conserved N-terminus of the Pseudomonas aeruginosa type IV pilin. (Reference: Doerr et al.%2C 1998 Molecular Microbiology)%3B~High confidence in function and specificity	gene	gene3411	http://www.ncbi.nlm.nih.gov/gene/?term=azo3355
azo3356	azo3356	pilR	pilR	3691660	3693036	-	two component system response regulator	Two component system response regulator%2C%3B~High confidence in function and specificity	gene	gene3412	http://www.ncbi.nlm.nih.gov/gene/?term=azo3356
azo3357	azo3357	pilS	pilS	3693033	3694586	-	two component system sensor protein	Two component system sensor protein%2C%3B~High confidence in function and specificity	gene	gene3413	http://www.ncbi.nlm.nih.gov/gene/?term=azo3357
azo3358	azo3358		azo3358	3694588	3694929	-	hypothetical membrane protein	Hypothetical membrane protein. No real homology of the entire protein to the data bank. no domains predicted no signal peptide 1TMH	gene	gene3414	http://www.ncbi.nlm.nih.gov/gene/?term=azo3358
azo3359	azo3359	ybdL	ybdL	3694971	3696188	-	probable aminotransferase	Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes%2Csuch as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity%2C these various enzymes can be grouped into subfamilies%3B these sequences are defined by the aminotransferases class-I pyridoxal-phosphate attachment site signature%2C which contains the lysine residue involved in pyridoxal-phosphate binding. Similar to trembl|Q8XXV2 (58%25) and to sprot|YBDL_ECOLI (52%25). Pfam (PF00155): Aminotransferases class-I pyridoxal-phosphate-binding site%3B~Specificity unclear	gene	gene3415	http://www.ncbi.nlm.nih.gov/gene/?term=azo3359
azo3360	azo3360	eif	eif	3696278	3697354	+	translation initiation factor eIF-2B alpha subunit	Putative translation initiation factor eIF-2B (eIF-2B GDP-GTP exchange factor). CATALYZES THE EXCHANGE OF INITIATION FACTOR 2-BOUND GDP FOR GTP%3B~High confidence in function and specificity	gene	gene3416	http://www.ncbi.nlm.nih.gov/gene/?term=azo3360
azo3361	azo3361	fucA	fucA	3697351	3698049	+	putative L-fuculose phosphate aldolase	L-fuculose phosphate aldolase(L-fuculose-1-phosphate aldolase). Involved in the fucose metabolism catalyzing the third step of the pathway%2C L-fuculose 1-phosphate %3D glycerone phosphate + (S)-lactaldehyde. 41%25 Aldolase_II_N.IPR004782%3B FucA. Pfam:PF00596%3B Aldolase_II%3B 1. TIGRFAMs:TIGR01086%3B fucA%3B 1.%3B~High confidence in function and specificity	gene	gene3417	http://www.ncbi.nlm.nih.gov/gene/?term=azo3361
azo3362	azo3362	glxR1	glxR1	3698348	3699238	-	putative 2-hydroxy-3-oxopropionate reductase	Putative 2-hydroxy-3-oxopropionate reductase Homology to glxR of E. coli of 39%25 (SWISSPROT:GLXR_ECOLI) Activity:- (R)-glycerate + NAD(P)(+) %3D 2-hydroxy-3-oxopropanoate + NAD(P)H. InterPro: 3-hydroyisobutyrate dehydrogenase (IPR002204) Pfam: Nad binding domain of 6-phosphoglucanate dehydrogenase (PF03446) Tigrfam: gnd_rel: 6-phosphoglucante no signal peptide no TMHs%3B~Family membership	gene	gene3418	http://www.ncbi.nlm.nih.gov/gene/?term=azo3362
azo3363	azo3363	glxR2	glxR2	3699235	3700116	-	probable 2-hydroxy-3-oxopropionate reductase	Probable 2-hydroxy-3-oxopropionate reductase Homology to glxR of E. coli of 46%25 (SWISSPROT:GLXR_ECOLI) Activity:- (R)-glycerate + NAD(P)(+) %3D 2-hydroxy-3-oxopropanoate + NAD(P)H. InterPro: 3-hydroyisobutyrate dehydrogenase (IPR002204) Pfam: Nad binding domain of 6-phosphoglucanate dehydrogenase (PF03446) Tigrfam: gnd_rel: 6-phosphoglucante no signal peptide no TMHs 0%3B~High confidence in function and specificity	gene	gene3419	http://www.ncbi.nlm.nih.gov/gene/?term=azo3363
azo3364	azo3364		azo3364	3700206	3701126	+	glycosyl transferase	The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD%2C EC: 2.4.2.18) and thymidine phosphorylase (EC: 2.4.2.2). All these proteins can transfer a phosphorylated ribose substrate. Similar to sprot|YBIB_ECOLI (40%25) and to sprot|TRPD_SULSO (25%25). Pfam (PF02885): Glycosyl transferase%2C family 3%3B~Family membership	gene	gene3420	http://www.ncbi.nlm.nih.gov/gene/?term=azo3364
azo3365	azo3365	modD	modD	3701590	3702435	-	putative molybdenum transport protein	Putative pyrophosphorylase modD (EC 2.4.2.-). InterPro: Quinolinate phosphoribosyl transferase%3B~Specificity unclear	gene	gene3421	http://www.ncbi.nlm.nih.gov/gene/?term=azo3365
azo3366	azo3366		azo3366	3702524	3702907	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to rpa3088 of R. palustris of 65%25 (tremblnew|CAE28529). Pfam: Dinitrogenase iron-molybdenum cofactor. no signal peptide. no TMHs.	gene	gene3422	http://www.ncbi.nlm.nih.gov/gene/?term=azo3366
azo3367	azo3367		azo3367	3702913	3703188	-	putative NifZ Protein homolog	Putative NifZ Protein homolog%2C shares 45%25 similarity to SwissProt:P46040%2C NifZ protein entry. Has PF04319:IPR007415:NifZ domain%3BThis short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins. No Signal peptide present. No TMH Present.%3B~High confidence in function and specificity	gene	gene3423	http://www.ncbi.nlm.nih.gov/gene/?term=azo3367
azo3368	azo3368	fer22	fer22	3703191	3703517	-	probable ferredoxin 2Fe-2S protein	Probable ferredoxin 2fe-2s protein. Homology to fer2 of C. pasteruianum of 43%25 (sprot|FER2_CLOPA). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. no signal peptide no TMHs%3B~Family membership	gene	gene3424	http://www.ncbi.nlm.nih.gov/gene/?term=azo3368
azo3369	azo3369		azo3369	3703673	3704557	-	conserved hypothetical protein	Pirin-like protein. TREMBL:8Y1Z6: 68%25 identity%2C 80%25 similarity InterPro: DUF209 InterPro:IPR008778%3B Pirin_C. IPR003829%3B Pirin_N. Pfam :PF02678%3B Pirin%3B 1. PF05726%3B Pirin_C TIGR00292: thiazole biosynthesis enzyme No signal peptide (Signal P predicted). No transmembrane helices (TMHMM predicted).%3B~Specificity unclear	gene	gene3425	http://www.ncbi.nlm.nih.gov/gene/?term=azo3369
azo3370	azo3370	acpD	acpD	3704618	3705220	-	probable acyl carrier protein phosphodiesterase	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP (By similarity). Entry name :- SWISSPROT:ACPD_ECOLI InterPro:-IPR003680%3B NADHdh_2. Pfam:- PF02525%3B Flavodoxin_2%3B 1. Identities %3D 97/180 (53%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene3426	http://www.ncbi.nlm.nih.gov/gene/?term=azo3370
azo3371	azo3371	ltrA	ltrA	3705329	3706252	+	putative transcriptional regulator%2C LysR family	Putative transcriptional regulator%2C LysR family%2C%3B~High confidence in function and specificity	gene	gene3427	http://www.ncbi.nlm.nih.gov/gene/?term=azo3371
azo3372	azo3372	dsbB	dsbB	3706379	3706879	+	putative disulfide bond formation protein B	Disulfide bond formation protein B. Homology to dsdB of B. cepacia of 38%25 (BAA11858). Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the dsbA protein (By similarity). InterPro: Disulfide bond formation protein DsbB (IPR3752). Pfam: Disulfide bond formation protein DsbB signal peptide probable 3 to 4 TMHs%3B~Family membership	gene	gene3428	http://www.ncbi.nlm.nih.gov/gene/?term=azo3372
azo3373	azo3373		azo3373	3706887	3707195	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to cv1788 of C. violaceum of 33%25 (trembl|Q7NX41). no domains predicted. no signal peptide. no TMHS.	gene	gene3429	http://www.ncbi.nlm.nih.gov/gene/?term=azo3373
azo3374	azo3374		azo3374	3707307	3707525	-	thiosulfate sulfurtransferase	Homolog to the hypothetical protein ygaP from E.coli. SWISSPROT:YGAP_ECOLI InterPro: IPR001763%3B Rhodanese-like. Pfam: PF00581%3B Rhodanese%3B 1. TMhelix:2 present.%3B~Function unclear	gene	gene3430	http://www.ncbi.nlm.nih.gov/gene/?term=azo3374
azo3375	azo3375		azo3375	3707522	3710800	-	RND efflux transporter%2C permease protein	AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q8KAV4 (43%25 identity)%3B SWISSPROT:P25197 (23%25 identity). InterPro (IPR001036): Acriflavin resistance protein. PFam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TMHMM predicting 11 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear	gene	gene3431	http://www.ncbi.nlm.nih.gov/gene/?term=azo3375
azo3376	azo3376		azo3376	3710800	3711864	-	membrane fusion protein	HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family. SignalP predicting signal peptide. TC (2.A.6.1): The Heavy Metal Efflux (HME) Family.%3B~Family membership	gene	gene3432	http://www.ncbi.nlm.nih.gov/gene/?term=azo3376
azo3377	azo3377		azo3377	3711911	3712303	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Bcep18194_A5800 of Burkholderia sp. 383 of 53%25. Pfam: CbiX. The function of CbiX is uncertain%2C however it is found in cobalamin biosynthesis operons and so may have a related function. Some CbiX proteins contain a striking histidine-rich region at their C-terminus%2C which suggests that it might be involved in metal chelation. No signal peptide. No TMHs.	gene	gene3433	http://www.ncbi.nlm.nih.gov/gene/?term=azo3377
azo3378	azo3378		azo3378	3712312	3713148	-	HesA/MoeB/ThiF family protein	Region start changed from 3713308 to 3713122 (-186 bases)	gene	gene3434	http://www.ncbi.nlm.nih.gov/gene/?term=azo3378
azo3379	azo3379		azo3379	3713397	3714398	-	hydroxyacylglutathione hydrolase	Probable metallo betalactamase related protein with 47%25 identity and 65%25 similarity (TREMBL:Q82SI4). Pfam: Chitin synthetase%2C SOR/SNZ family%2C Thiolase N-terminal domain%2C phosphotyrosine interaction domain. TMHMM predicted transmembrane helix.%3B~Function unclear	gene	gene3435	http://www.ncbi.nlm.nih.gov/gene/?term=azo3379
azo3380	azo3380		azo3380	3714479	3715621	+	conserved hypothetical transaminase	Region start changed from 3714581 to 3714479 (102 bases)	gene	gene3436	http://www.ncbi.nlm.nih.gov/gene/?term=azo3380
azo3381	azo3381		azo3381	3715626	3718484	-	hypothetical signaling protein	Hypothetical signaling protein	gene	gene3437	http://www.ncbi.nlm.nih.gov/gene/?term=azo3381
azo3382	azo3382	rcp3	rcp3	3718505	3718960	-	putative two-component system regulatory protein	Putative two-component system regulatory protein%2Cweak similarity to SWISSPROT: sprot|RCP1_SYNY3 (32%25 Synechocystis sp.%2C response regulator Rcp1 ) InterPro: IPR001789 Response_reg. Pfam: PF00072 response_reg. SMART: SM00448 REC. Response regulator rcp1. FORMS A TWO-COMPONENT SYSTEM WITH CPH1 IN WHICH IT ACTS AS RECEIVER SUBSTRATE.%3B~Family membership	gene	gene3438	http://www.ncbi.nlm.nih.gov/gene/?term=azo3382
azo3383	azo3383	cph2	cph2	3719043	3721649	-	putative two-component system sensor protein	Putative two-component system sensor protein%2C weak similarity to SWISSPROT: sprot|PHY1_SYNY3 (10%25 Synechocystis sp.%2C Cph1) InterPro: IPR003594 ATPbind_ATPase. IPR004358 Bact_sens_pr_C. IPR003661 His_kinA_N. IPR005467 His_kinase. IPR003660 HAMP. IPR000014 PAS_domain. IPR001610 PAC motif. Pfam: PF00672 HAMP. PF02518 HATPase_c. PF00512 HisKA. PF00989 PAS domain. PF00785 PAC motif SMART: SM00304 HAMP. SM00387 HATPase_c. SM00388 HisKA. SM00091 PAS. SM00086 PAC. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices. Phytochrome-like protein cph1 (EC 2.7.3.-) (Light-regulated histidine kinase 1) (Bacteriophytochrome cph1). REGULATORY PHOTORECEPTOR WHICH EXISTS IN TWO FORMS THAT ARE REVERSIBLY INTERCONVERTIBLE BY LIGHT: THE R FORM THAT ABSORBS MAXIMALLY IN THE RED REGION OF THE SPECTRUM AND THE FR FORM THAT ABSORBS MAXIMALLY IN THE FAR-RED REGION. HAS ALSO A SLIGHT BLUE SHIFT FOR THE FAR-RED MAXIMUM. FORMS A TWO-COMPONENT SYSTEM WITH THE RCP1 RESPONSE REGULATOR.%3B~Conserved hypothetical protein	gene	gene3439	http://www.ncbi.nlm.nih.gov/gene/?term=azo3383
azo3384	azo3384		azo3384	3721646	3722614	-	putative aliphatic sulfonates binding protein.	Putative aliphatic sulfonates binding protein precursor.PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR ALIPHATIC SULFONATES. PUTATIVE BINDING PROTEIN. 22%25 SBP_bac_3. SMART: SM00062%3B PBPb%3B 1.%3B~Specificity unclear	gene	gene3440	http://www.ncbi.nlm.nih.gov/gene/?term=azo3384
azo3385	azo3385	ssb	ssb	3722791	3723273	-	single-strand DNA-binding protein	Single-strand binding protein (Helix-destabilizing protein). This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair (By similarity).%3B~High confidence in function and specificity	gene	gene3441	http://www.ncbi.nlm.nih.gov/gene/?term=azo3385
azo3386	azo3386		azo3386	3723325	3724530	-	putative transport protein	Hypothetical transport protein yajR. InterPro: General substrate transporters 2_A_01_02: Multidrug resistance protein%3B~Specificity unclear	gene	gene3442	http://www.ncbi.nlm.nih.gov/gene/?term=azo3386
azo3387	azo3387	uvrA2	uvrA2	3724646	3727483	+	excinuclease ABC subunit A	UvrABC system protein A (UvrA protein) . The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB the uvrA molecules dissociate (By similarity). InterPro: Excinuclease ABC A subunit uvra: excinuclease ABC A subunit.%3B~High confidence in function and specificity	gene	gene3443	http://www.ncbi.nlm.nih.gov/gene/?term=azo3387
azo3388	azo3388		azo3388	3727563	3727862	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs	gene	gene3444	http://www.ncbi.nlm.nih.gov/gene/?term=azo3388
azo3389	azo3389	galE2	galE2	3727870	3728883	-	UDP-glucose 4-epimerase	UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP- galactose 4-epimerase). InterPro: NAD dependent epimerase/dehydratase family%3B~High confidence in function and specificity	gene	gene3445	http://www.ncbi.nlm.nih.gov/gene/?term=azo3389
azo3390	azo3390	rplQ	rplQ	3728974	3729369	-	50S ribosomal protein L17	High confidence in function and specificity	gene	gene3446	http://www.ncbi.nlm.nih.gov/gene/?term=azo3390
azo3391	azo3391	rpoA	rpoA	3729396	3730376	-	DNA-directed RNA polymerase	DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit)%2C%3B~High confidence in function and specificity	gene	gene3447	http://www.ncbi.nlm.nih.gov/gene/?term=azo3391
azo3392	azo3392	rpsD	rpsD	3730415	3731044	-	30S ribosomal protein S4	30S ribosomal protein S4.%3B~Family membership	gene	gene3448	http://www.ncbi.nlm.nih.gov/gene/?term=azo3392
azo3393	azo3393	rpsK	rpsK	3731059	3731448	-	30S ribosomal protein S11	30S ribosomal protein S11. Located on the platform of the 30S subunit it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome%3B~High confidence in function and specificity	gene	gene3449	http://www.ncbi.nlm.nih.gov/gene/?term=azo3393
azo3394	azo3394	rpsM	rpsM	3731461	3731823	-	30S ribosomal protein S13	30S ribosomal protein S13. Located at the top of the head of the 30S subunit it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b) connecting the 2 subunits%3B these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P- sites%3B~High confidence in function and specificity	gene	gene3450	http://www.ncbi.nlm.nih.gov/gene/?term=azo3394
azo3395	azo3395	rpmJ	rpmJ	3731877	3731990	-	Ribosomal protein L36	High confidence in function and specificity	gene	gene3451	http://www.ncbi.nlm.nih.gov/gene/?term=azo3395
azo3396	azo3396	infA2	infA2	3732016	3732234	-	translation initiation factor IF-1	Translation initiation factor IF-1. No specific function has so far been attributed to this initiation factor%3B however it seems to stimulate more or less all the activities of the other two initiation factors IF-2 and IF-3.%3B~High confidence in function and specificity	gene	gene3452	http://www.ncbi.nlm.nih.gov/gene/?term=azo3396
azo3397	azo3397	secY	secY	3732238	3733563	-	preprotein translocase SecY subunit	Preprotein translocase secY subunit. INVOLVED IN PROTEIN EXPORT. INTERACTS WITH SECA AND SECE TO ALLOW THE TRANSLOCATION OF PROTEINS ACROSS THE PLASMA MEMBRANE BY FORMING PART OF A CHANNEL. Pfam: secY probable 10 TMH no signal peptide%3B~High confidence in function and specificity	gene	gene3453	http://www.ncbi.nlm.nih.gov/gene/?term=azo3397
azo3398	azo3398	rplO	rplO	3733578	3734012	-	50S ribosomal protein L15	50S ribosomal protein L15. This protein binds directly to 23S ribosomal RNA.%3B~High confidence in function and specificity	gene	gene3454	http://www.ncbi.nlm.nih.gov/gene/?term=azo3398
azo3399	azo3399	rpmD	rpmD	3734014	3734196	-	50S ribosomal protein L30	50S ribosomal protein L30.%3B~Function unclear	gene	gene3455	http://www.ncbi.nlm.nih.gov/gene/?term=azo3399
azo3400	azo3400	rpsE	rpsE	3734200	3734724	-	30S ribosomal protein S5	30S ribosomal protein S5. Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.%3B~High confidence in function and specificity	gene	gene3456	http://www.ncbi.nlm.nih.gov/gene/?term=azo3400
azo3401	azo3401	rplR	rplR	3734737	3735090	-	50S ribosomal protein L18	50S ribosomal protein L18. This is one of 3 proteins that mediate the attachment of the 5S RNA into the large ribosomal subunit.%3B~High confidence in function and specificity	gene	gene3457	http://www.ncbi.nlm.nih.gov/gene/?term=azo3401
azo3402	azo3402	rplF	rplF	3735102	3735635	-	50S ribosomal protein L6	50S ribosomal protein L6. THIS PROTEIN BINDS DIRECTLY TO 23S RIBOSOMAL RNA AND IS LOCATED AT THE AMINOACYL-TRNA BINDING SITE OF THE PEPTIDYLTRANSFERASE CENTER.%3B~High confidence in function and specificity	gene	gene3458	http://www.ncbi.nlm.nih.gov/gene/?term=azo3402
azo3403	azo3403	rpsH	rpsH	3735645	3736040	-	30S ribosomal protein S8	30S ribosomal protein S8. One of the primary rRNA binding proteins it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit%3B~High confidence in function and specificity	gene	gene3459	http://www.ncbi.nlm.nih.gov/gene/?term=azo3403
azo3404	azo3404	rpsN	rpsN	3736054	3736359	-	30S ribosomal protein S14	30S ribosomal protein S14.%3B~High confidence in function and specificity	gene	gene3460	http://www.ncbi.nlm.nih.gov/gene/?term=azo3404
azo3405	azo3405	rplE	rplE	3736367	3736906	-	50S ribosomal protein L5	50S ribosomal protein L5. This is one of 3 proteins that mediate the attachment of the 5S RNA into the large ribosomal subunit.%3B~High confidence in function and specificity	gene	gene3461	http://www.ncbi.nlm.nih.gov/gene/?term=azo3405
azo3406	azo3406	rplX	rplX	3736916	3737233	-	50S ribosomal protein L24	50S ribosomal protein L24 precursor%3B~High confidence in function and specificity	gene	gene3462	http://www.ncbi.nlm.nih.gov/gene/?term=azo3406
azo3407	azo3407	rplN	rplN	3737246	3737614	-	50S ribosomal protein L14	50S ribosomal protein L14.%3B~High confidence in function and specificity	gene	gene3463	http://www.ncbi.nlm.nih.gov/gene/?term=azo3407
azo3408	azo3408	rpsQ	rpsQ	3737766	3738035	-	30S ribosomal protein S17	30S ribosomal protein S17. PROTEIN S17 BINDS SPECIFICALLY TO THE 5 END OF 16S RIBOSOMAL RNA. S17 IS THOUGHT TO BE INVOLVED IN THE RECOGNITION OF TERMINATION CODONS.%3B~Function unclear	gene	gene3464	http://www.ncbi.nlm.nih.gov/gene/?term=azo3408
azo3409	azo3409	rpmC	rpmC	3738032	3738226	-	50S ribosomal protein L29	50S ribosomal protein L29.%3B~Family membership	gene	gene3465	http://www.ncbi.nlm.nih.gov/gene/?term=azo3409
azo3410	azo3410	rplP	rplP	3738229	3738642	-	50S ribosomal protein L16	50S ribosomal protein L16. This protein binds directly to 23S ribosomal RNA and is located at the a site of the peptidyltransferase center.%3B~High confidence in function and specificity	gene	gene3466	http://www.ncbi.nlm.nih.gov/gene/?term=azo3410
azo3411	azo3411	rpsC	rpsC	3738642	3739424	-	30S ribosomal protein S3	30S ribosomal protein S3. Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome positioning it for translation.%3B~High confidence in function and specificity	gene	gene3467	http://www.ncbi.nlm.nih.gov/gene/?term=azo3411
azo3412	azo3412	rplV	rplV	3739434	3739763	-	50S ribosomal protein L22	50S ribosomal protein L22.%3B~High confidence in function and specificity	gene	gene3468	http://www.ncbi.nlm.nih.gov/gene/?term=azo3412
azo3413	azo3413	rpsS	rpsS	3739773	3740048	-	30S ribosomal protein S19	30S ribosomal protein S19. Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.%3B~High confidence in function and specificity	gene	gene3469	http://www.ncbi.nlm.nih.gov/gene/?term=azo3413
azo3414	azo3414	rplB	rplB	3740059	3740886	-	50S ribosomal protein L2	50S ribosomal protein L2. This protein is a primary 23s rRNA-binding protein. It has peptidyltransferase activity.%3B~High confidence in function and specificity	gene	gene3470	http://www.ncbi.nlm.nih.gov/gene/?term=azo3414
azo3415	azo3415	rplW	rplW	3740893	3741198	-	50S ribosomal protein L23	50S ribosomal protein L23. BINDS TO A SPECIFIC REGION ON THE 23S RRNA.%3B~High confidence in function and specificity	gene	gene3471	http://www.ncbi.nlm.nih.gov/gene/?term=azo3415
azo3416	azo3416	rplD	rplD	3741195	3741815	-	50S ribosomal protein L4	50S ribosomal protein L4. PROTEIN L4 IS ALSO A TRANSLATIONAL REPRESSOR PROTEIN IT CONTROLS THE TRANSLATION OF THE S10 OPERON (TO WHICH BELONG L4) BY BINDING TO ITS MRNA.%3B~High confidence in function and specificity	gene	gene3472	http://www.ncbi.nlm.nih.gov/gene/?term=azo3416
azo3417	azo3417	rplC	rplC	3741830	3742468	-	50S ribosomal protein L3	50S ribosomal protein L3. This protein binds directly to 23S ribosomal RNA and may participate in the formation of the peptidyltransferase center of the ribosome%3B~High confidence in function and specificity	gene	gene3473	http://www.ncbi.nlm.nih.gov/gene/?term=azo3417
azo3418	azo3418	rpsJ	rpsJ	3742583	3742894	-	30S ribosomal protein S10	30S ribosomal protein S10. Involved in the binding of tRNA to the ribosomes.%3B~High confidence in function and specificity	gene	gene3474	http://www.ncbi.nlm.nih.gov/gene/?term=azo3418
azo3419	azo3419	tufA	tufA	3742952	3744142	-	elongation factor Tu	Elongation factor Tu (EF-Tu). This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.%3B~High confidence in function and specificity	gene	gene3475	http://www.ncbi.nlm.nih.gov/gene/?term=azo3419
azo3420	azo3420	fusA2	fusA2	3744170	3746266	-	elongation factor EF-G	Elongation factor EF-G . Homology to FusA of E. coli of 71%25 (sprot|EFG_ECOLI(SRS)) This protein promotes the GTP-dependent translocation of the nascent protein chain from the A-site to the P-site of the ribosome. Interpro: Elongation factor G%2C C-terminus (IPR000640)%3B Elongation factor Tu domain 2 (IPR004161)%3B GTP-binding elongation factor (IPR000795)%3B Translation elongation factor G (IPR004540) Tigrfam: EF-G: translation elongation factor G Pfam: Elongation factor Tu domain 2%3B Elongation factor Tu GTP binding domain%3B Elongation factor G C-terminus no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3476	http://www.ncbi.nlm.nih.gov/gene/?term=azo3420
azo3421	azo3421	rpsG	rpsG	3746378	3746848	-	30S ribosomal protein S7	30S ribosomal protein S7. One of the primary rRNA binding proteins it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center probably blocks exit of the E-site tRNA%3B~High confidence in function and specificity	gene	gene3477	http://www.ncbi.nlm.nih.gov/gene/?term=azo3421
azo3422	azo3422	rpsL	rpsL	3746882	3747259	-	30S ribosomal protein S12	30S ribosomal protein S12. Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8 S12 and S17 appears to hold together the shoulder and platform of the 30S subunit%3B~High confidence in function and specificity	gene	gene3478	http://www.ncbi.nlm.nih.gov/gene/?term=azo3422
azo3423	azo3423	rpoC	rpoC	3747393	3751607	-	DNA-directed RNA polymerase	DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (Transcriptase beta chain) (RNA polymerase beta subunit)%2C%3B~High confidence in function and specificity	gene	gene3479	http://www.ncbi.nlm.nih.gov/gene/?term=azo3423
azo3424	azo3424	rpoB	rpoB	3751682	3755815	-	DNA-directed RNA polymerase	DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (Transcriptase beta chain) (RNA polymerase beta subunit)%2C%3B~High confidence in function and specificity	gene	gene3480	http://www.ncbi.nlm.nih.gov/gene/?term=azo3424
azo3425	azo3425	rplL	rplL	3755976	3756353	-	50S ribosomal subunit protein L7/L12	50S ribosomal protein L7/L12. Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.%3B~High confidence in function and specificity	gene	gene3481	http://www.ncbi.nlm.nih.gov/gene/?term=azo3425
azo3426	azo3426	rplJ	rplJ	3756405	3756908	-	50S ribosomal protein L10	50S ribosomal protein L10.%3B~High confidence in function and specificity	gene	gene3482	http://www.ncbi.nlm.nih.gov/gene/?term=azo3426
azo3427	azo3427	rplA	rplA	3757142	3757837	-	50S ribosomal protein L1	50S ribosomal protein L1. This protein binds directly to 23S rRNA and is located in the neighborhood of the site where elongation factor Tu is bound to the ribosome (By similarity).%3B~High confidence in function and specificity	gene	gene3483	http://www.ncbi.nlm.nih.gov/gene/?term=azo3427
azo3428	azo3428	rplK	rplK	3757840	3758271	-	50S ribosomal protein L11	50S ribosomal protein L11. This protein binds directly to 23S ribosomal RNA (By similarity). InterPro: Ribosomal protein L11%3B~High confidence in function and specificity	gene	gene3484	http://www.ncbi.nlm.nih.gov/gene/?term=azo3428
azo3429	azo3429	nusG	nusG	3758376	3758915	-	putative transcription antitermination protein	Transcription antitermination protein NusG. Influences transcription termination and antitermination. Acts as a component of the transcription complex and interacts with the termination factor rho and RNA polymerase (By similarity). Belongs to the nusG family. nusG: transcription antitermination fact 65%25 1. PF02357 NusG%3B 1. SM00739%3B KOW%3B 1. SM00738%3B NGN%3B 1. TIGR00922%3B nusG%3B 1. TIGR01956%3B NusG_myco%3B 1. Together with secE in one operon%3B~High confidence in function and specificity	gene	gene3485	http://www.ncbi.nlm.nih.gov/gene/?term=azo3429
azo3430	azo3430	secE	secE	3758912	3759259	-	preprotein translocase%2C SecE subunit	Preprotein translocase secE subunit. Essential for protein export (By similarity). SecE%2C part of the main SecYEG translocase complex%2C is ~~106 residues in length%2Cand spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG%2C SecE forms a multimeric channel through which preproteins are translocated%2C using both proton motive forces and ATP-driven secretion. Pfam: SecE/sec61 gamma subunit of protein translocation Tigrfam: 3a0501s06: SecE subunit of protein tran%3B~High confidence in function and specificity	gene	gene3486	http://www.ncbi.nlm.nih.gov/gene/?term=azo3430
azo3431	azo3431	tufB	tufB	3759422	3760612	-	elongation factor Tu	Elongation factor Tu (EF-Tu). This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.%3B~High confidence in function and specificity	gene	gene3488	http://www.ncbi.nlm.nih.gov/gene/?term=azo3431
azo3432	azo3432	dld	dld	3761183	3762592	+	probable D-lactate dehydrogenase	D-lactate dehydrogenase. Homology to dld of Mus musculus of 52%25 (trembl|Q8CIV4) CATALYZE THE STEREOSPECIFIC OXIDATION OF D-LACTATE TO PYRUVATE. InterPro: FAD linked oxidase C-terminal (IPR004113)%3B FAD linked oxidase%2C N-terminal (IPR006093) Pfam: FAD binding damian%3B FAD linked oxidases%2C C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~Family membership	gene	gene3492	http://www.ncbi.nlm.nih.gov/gene/?term=azo3432
azo3433	azo3433		azo3433	3762769	3766365	+	conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase	Conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase. Homology to rsc3122 of R. solanacearum (trembl|Q8XUR3). CATALYZES THE FERREDOXIN-DEPENDENT OXIDATIVE DECARBOXYLATION OF ARYLPYRUVATES (BY SIMILARITY). InterPro: Pyruvate ferredoxin/flavodoxin oxidoreductase (IPR002869). Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase. no singal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3493	http://www.ncbi.nlm.nih.gov/gene/?term=azo3433
azo3434	azo3434		azo3434	3766433	3767197	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Similar to TREMBL:Q82Y44 (38%25 identity)%3B TREMBL:Q7NWG1 (37%25 identity). TMHMM reporting four transmembrane helices. signal peptide%3B~Conserved hypothetical protein	gene	gene3494	http://www.ncbi.nlm.nih.gov/gene/?term=azo3434
azo3435	azo3435		azo3435	3767294	3767998	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank Pfam: CobQ/CobB/MinD/ParA nucleotide binding domain no signal peptide no TMHs	gene	gene3495	http://www.ncbi.nlm.nih.gov/gene/?term=azo3435
azo3436	azo3436	flcA	flcA	3768050	3768676	-	probable DNA-binding response regulator%2C LuxR family	Probable DNA-binding response regulator%2C LuxR family%2C%3B~Specificity unclear	gene	gene3496	http://www.ncbi.nlm.nih.gov/gene/?term=azo3436
azo3437	azo3437		azo3437	3768936	3769865	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA3798 of Azoarcus sp. EbN1 of 42%25 (gnl|keqq|eba:ebA3798(KEGG)). Pfam: DUF534. This is a family of putative secreted proteins of unknown function. signal peptide. no TMHs.%3B~Conserved hypothetical protein	gene	gene3497	http://www.ncbi.nlm.nih.gov/gene/?term=azo3437
azo3438	azo3438	vsrB	vsrB	3769862	3771781	+	putative virulence regulator protein	Putative virulence regulator protein%2CATPbind_ATPase. IPR005467%3B His_kinase. IPR003661%3B His_kinA_N. IPR003660%3B HAMP. IPR001789%3B Response_reg. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. PF00672%3B HAMP. PF00072%3B Response_reg. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00304%3B HAMP. SM00448%3B REC. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Specificity unclear	gene	gene3498	http://www.ncbi.nlm.nih.gov/gene/?term=azo3438
azo3439	azo3439		azo3439	3771856	3772257	+	conserved hypothetical protein	conserved hypothetical protein. Homology to ebB122 of Azoarcus sp. EbN1 of 65%25 (gnl|keqq|eba:ebB122(KEGG)). No domains predicted. NO signal peptide present. No TMH present.	gene	gene3499	http://www.ncbi.nlm.nih.gov/gene/?term=azo3439
azo3440	azo3440		azo3440	3772274	3773446	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to pa1188 of P. aeruginosa of 40%25 (trembl|Q9I4F0). InterPro: CAIB/BAIF family (IPR003673). Pfam: CAIB/BAIF family. no signal peptide. no TMHs. TIGR00106: conserved hypothetical protein	gene	gene3500	http://www.ncbi.nlm.nih.gov/gene/?term=azo3440
azo3441	azo3441		azo3441	3773552	3774784	-	Phenylacetate--CoA ligase	Phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase) (PA-CoA ligase). CATALYZES THE ACTIVATION OF PHENYLACETIC ACID TO PHENYLACETYL-COA. InterPro: AMP-dependent synthetase and ligase%3B~Function unclear	gene	gene3501	http://www.ncbi.nlm.nih.gov/gene/?term=azo3441
azo3442	azo3442	livF	livF	3774879	3775721	-	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7WQU7 (73%25) and to trembl|Q89HM3 (54%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear	gene	gene3502	http://www.ncbi.nlm.nih.gov/gene/?term=azo3442
azo3443	azo3443		azo3443	3775809	3777131	-	conserved hypothetical ABC-type branched-chain amino acid transport systems%2C periplasmic component	Conserved hypothetical ABC-type branched-chain amino acid transport systems%2C periplasmic component. Homology to Raeut03002728 of R. eutropha of 58%25 (gi|45519901|ref|ZP_00171452.1|(NCBI ENTREZ)). Pfam: Receptor family ligand binding region. This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Signal peptide present. TMH in signal peptide.%3B~Family membership	gene	gene3503	http://www.ncbi.nlm.nih.gov/gene/?term=azo3443
azo3444	azo3444	livM4	livM4	3777218	3778285	-	putative branched-chain amino acid transport permease	Putative branched-chain amino acid transport permease. Homology to livM of E. coli of 27%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: Branched-chain amino acid transport system no signal peptide probalbe 10 TMHs%3B~Specificity unclear	gene	gene3504	http://www.ncbi.nlm.nih.gov/gene/?term=azo3444
azo3445	azo3445		azo3445	3778448	3779374	-	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q881A7 (65%25) and to sprot|LIVH_ECOLI (26%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting eight Tmhelix. SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene3505	http://www.ncbi.nlm.nih.gov/gene/?term=azo3445
azo3446	azo3446		azo3446	3779397	3780221	-	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q881A6 (55%25)%2C to sprot|BRAF_PSEAE (34%25) and to sprot|LIVG_ECOLI (33%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear	gene	gene3506	http://www.ncbi.nlm.nih.gov/gene/?term=azo3446
azo3447	azo3447	acS2	acS2	3780259	3782268	-	putative Acetyl-coenzyme A synthetase	Function:-Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle%2C and biosynthetic compounds via the glyoxylate shunt. Acetylates cheY%2C the response regulator involved in flagellar movement and chemotaxis. Activity:- ATP + acetate + CoA %3D AMP + diphosphate + acetyl-CoA Entry name SWISSPROT:ACSA_ECOLI InterPro:- IPR000873%3B AMP-bind. Pfam:- PF00501%3B AMP-binding%3B 1. Identities %3D 114/506 (22%25) Number of predicted TMHs: 0%3B~Family membership	gene	gene3507	http://www.ncbi.nlm.nih.gov/gene/?term=azo3447
azo3448	azo3448		azo3448	3782641	3783468	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03001225 of Dechloromonas aromatica of 43%25 (gi|46141136|ref|ZP_00153001.2|(NBCI ENTREZ)). Pfam: Protein of unknown function. signal peptide. TMH in signal peptide	gene	gene3508	http://www.ncbi.nlm.nih.gov/gene/?term=azo3448
azo3449	azo3449	hemL	hemL	3783478	3784752	-	Glutamate-1-semialdehyde 2%2C1-aminomutase	Glutamate-1-semialdehyde 2%2C1-aminomutase (GSA) (GSA-AT). TIGRFAM: hemL: glutamate-1-semialdehyde-21-ami%3B~High confidence in function and specificity	gene	gene3509	http://www.ncbi.nlm.nih.gov/gene/?term=azo3449
azo3450	azo3450	thiE	thiE	3784828	3785448	-	Thiamine-phosphate diphosphorylase	Thiamine-phosphate pyrophosphorylase (TMP pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase). Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate (THZ-P) and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) (By similarity). InterPro: Thiamine monophosphate synthase (TMP) TIGRFAM: thiE: thiamine-phosphate pyrophosphorylase%3B~High confidence in function and specificity	gene	gene3510	http://www.ncbi.nlm.nih.gov/gene/?term=azo3450
azo3451	azo3451	thiD2	thiD2	3785441	3786283	-	phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase (HMP-phosphate kinase) (HMP-P kinase). catalyzes the phosphorylation of hmp-p to hmp-pp (by similarity) TIGRFAM: HMP-P_kinase: phosphomethylpyrimidine kinase%3B~Specificity unclear	gene	gene3511	http://www.ncbi.nlm.nih.gov/gene/?term=azo3451
azo3452	azo3452	rubB	rubB	3786395	3786574	+	RubB protein	High confidence in function and specificity	gene	gene3512	http://www.ncbi.nlm.nih.gov/gene/?term=azo3452
azo3453	azo3453	pilG	pilG	3786655	3787041	+	pilus protein	Pilus protein%2C Response_reg. Pfam: PF00072%3B Response_reg. SMART: SM00448%3B REC. PilG protein. IS INVOLVED IN PILUS BIOSYNTHESIS AND TWITCHING MOTILITY. MAY ACT AS A SINGLE-DOMAIN RESPONSE REGULATOR WHOSE FUNCTION MAY BE TO RECEIVE A CERTAIN ENVIRONMENTAL SIGNAL(S) AND THEN TRANSDUCE THAT SIGNAL TO THE PILUS ASSEMBLY MACHINERY VIA SPECIFIC PROTEIN-PROTEIN INTERACTIONS.%3B~High confidence in function and specificity	gene	gene3513	http://www.ncbi.nlm.nih.gov/gene/?term=azo3453
azo3454	azo3454	pilH	pilH	3787065	3787430	+	pilus protein	Pilus protein%2C Response_reg. Pfam: PF00072%3B Response_reg. SMART: SM00448%3B REC. PilH protein. MAY BE A PART OF A SIGNAL-TRANSDUCTION SYSTEM THAT REGULATES TWITCHING MOTILITY BY CONTROLLING PILUS FUNCTION (EXTENSION AND RETRACTION).%3B~High confidence in function and specificity	gene	gene3514	http://www.ncbi.nlm.nih.gov/gene/?term=azo3454
azo3455	azo3455	pilI	pilI	3787438	3787950	+	probable pilus biogenesis protein	Probable pilus biogenesis protein%2C CheW. Protein pilI. MAY BE A PART OF A SIGNAL-TRANSDUCTION SYSTEM THAT REGULATES TWITCHING MOTILITY BY CONTROLLING PILUS FUNCTION (EXTENSION AND RETRACTION). InterPro: CheW-like domain%3B~High confidence in function and specificity	gene	gene3515	http://www.ncbi.nlm.nih.gov/gene/?term=azo3455
azo3456	azo3456	pilJ	pilJ	3788002	3790122	+	probable pilus biogenesis protein	Probable pilus biogenesis protein%2C%3B~High confidence in function and specificity	gene	gene3516	http://www.ncbi.nlm.nih.gov/gene/?term=azo3456
azo3457	azo3457	pilL	pilL	3790157	3796255	+	putative pilus biogenese protein	Putative pilus biogenese protein%2C ATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR002545%3B CheW. IPR004105%3B H-kinase_dim. IPR005467%3B His_kinase. IPR008207%3B Hpt. IPR008208%3B Hpt_N. IPR001789%3B Response_reg. Pfam: PF01584%3B CheW. PF02895%3B H-kinase_dim. PF02518%3B HATPase_c. PF01627%3B Hpt. PF00072%3B Response_reg. SMART: SM00260%3B CheW. SM00387%3B HATPase_c. SM00073%3B HPT. SM00448%3B REC. HTH reporting nucleic acid binding motif%3B~Function unclear	gene	gene3517	http://www.ncbi.nlm.nih.gov/gene/?term=azo3457
azo3458	azo3458	phrB	phrB	3796292	3797803	-	deoxyribodipyrimidine photo-lyase	DNA photolyase (Photoreactivating enzyme). THIS ENZYME CATALYZES THE LIGHT-DEPENDENT MONOMERIZATION (300-600 NM) OF CYCLOBUTYL PYRIMIDINE DIMERS (IN CIS-SYN CONFIGURATION) WHICH ARE FORMED BETWEEN ADJACENT BASES ON THE SAME DNA STRAND UPON EXPOSURE TO ULTRAVIOLET RADIATION. TIGRFAM: phr2: deoxyribodipyrimidine photolyase.%3B~High confidence in function and specificity	gene	gene3518	http://www.ncbi.nlm.nih.gov/gene/?term=azo3458
azo3459	azo3459	algH	algH	3797871	3798437	+	transcriptional regulator	Transcriptional regulator%2C%3B~Specificity unclear	gene	gene3519	http://www.ncbi.nlm.nih.gov/gene/?term=azo3459
azo3460	azo3460	yqgF	yqgF	3798430	3798900	+	putative Hollyday junction resolvase	Putative Holliday junction resolvase (EC 3.1.-.-). Could be a nuclease that resolves Holliday junction intermediates in genetic recombination.%3B~High confidence in function and specificity	gene	gene3520	http://www.ncbi.nlm.nih.gov/gene/?term=azo3460
azo3461	azo3461	pyrR	pyrR	3798887	3799387	+	phosphoribosyl transferase	Phosphoribosyl transferase or bifunctional regulator/uracil phosphoribosyltransferase%3B~High confidence in function and specificity	gene	gene3521	http://www.ncbi.nlm.nih.gov/gene/?term=azo3461
azo3462	azo3462	pyrB	pyrB	3799380	3800339	+	aspartate carbamoyltransferase	Aspartate carbamoyltransferase (Aspartate transcarbamylase) (Carbamylaspartotranskinase) (ATCase)%3B~High confidence in function and specificity	gene	gene3522	http://www.ncbi.nlm.nih.gov/gene/?term=azo3462
azo3463	azo3463	pyrX	pyrX	3800410	3801693	+	probable dihydroorotase	Probable dihydroorotase. Homology to pyrC' of P. putida of 44%25 (sprot|PYRX_PSEPU) This protein tends to appear in a large%2C multifunctional complex with aspartate transcarbamoylase. It is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase. InterPro: Dihydroorotase multifunctional complex type (IPR004722)%3B Dihydroorotase (IPR002195) Tigrfam: pyrC_multi: dihydroorotase multifunctional complex type no signal peptide no TMHS%3B~High confidence in function and specificity	gene	gene3523	http://www.ncbi.nlm.nih.gov/gene/?term=azo3463
azo3464	azo3464	yggU	yggU	3801700	3801996	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to vc0458 of V. clholerae of 48%25 (sprot:Y458_VIBCH). InterPro: DUF167 (IPR003748). Pfam: Uncharacterized ACR%2C YGGU family%2C COF1872. no signal peptide. no TMHs	gene	gene3524	http://www.ncbi.nlm.nih.gov/gene/?term=azo3464
azo3465	azo3465		azo3465	3802001	3802582	-	conserved hypothetical YGGT-family protein	Conserved hypothetical YGGT-family protein. Homology to ne0394 of N. europae of 37%25 (trembl|Q82X94). This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown. InterPro: YGGT family (IPR003425). Pfam: YGGT family. no signal peptide. 5 TMHs.%3B~Conserved hypothetical protein	gene	gene3525	http://www.ncbi.nlm.nih.gov/gene/?term=azo3465
azo3466	azo3466	proC	proC	3802601	3803425	-	probable 1-pyrroline-5-carboxylate reductase	Delta 1-pyrroline-5-carboxylate reductase (P5CR) is the enzyme that catalyzes the terminal step in the biosynthesis of proline from glutamate%2C the NAD(P) dependent oxidation of 1-pyrroline-5-carboxylate into proline. Similar to trembl|Q82X95 (39%25) and to sprot|PROC_PSEAE (39%25). Pfam: Delta 1-pyrroline-5-carboxylate reductase TIGRFAM: proC%2C pyrroline-5-carboxylate reductase%3B~Specificity unclear	gene	gene3526	http://www.ncbi.nlm.nih.gov/gene/?term=azo3466
azo3467	azo3467		azo3467	3803499	3804212	-	conserved hypothetical protein	Concerved hypothetical protein. Homology to PA0394 of P. aeruginosa of 65%25 (sprot|Y394_PSEAE). InterPro: Uncharacterized pyridoxal-5-phosphate dependent enzyme family UPF0001 (IPR001608). Pfam: Uncharacterized protein family UPF0001. Tigrfam: TIGR00044: conserved hypothetical protein. no signal peptide. no TMHs	gene	gene3527	http://www.ncbi.nlm.nih.gov/gene/?term=azo3467
azo3468	azo3468	pilT	pilT	3804339	3805379	+	twitching motility protein	Tfp retraction protein PilT%2C involved in the twitching motility mechanism together with PilU%2C%3B~High confidence in function and specificity	gene	gene3528	http://www.ncbi.nlm.nih.gov/gene/?term=azo3468
azo3469	azo3469	pilU2	pilU2	3805466	3806599	+	twitching motility protein	Tfp retraction protein PilU is involved in the Twitching Motility mechanism%2C%3B~High confidence in function and specificity	gene	gene3529	http://www.ncbi.nlm.nih.gov/gene/?term=azo3469
azo3470	azo3470	vgrG	vgrG	3806788	3809505	+	probable vgr-related protein	Probable vgr-related protein %2C44%25 identity(54%25 similarity) to TrEMBL%3B Q7P238.TrEMBL%3BQ8XRU3(44%25 identity). Signal Peptide Present. Has SMART%3BSM00438%2CRepressor of transcription%3BIPR000967%2C Znf_NFX1%3BThis domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C%2Cwhere X can be any amino acid%2C and numbers in brackets indicate the number of residues. The two position can be either his or cys. This domain is found in the human transcriptional repressor NK-X1%2C a repressor of HLA-DRA transcription%3B the Drosophila shuttle craft protein%2C which plays an essential role during the late stages of embryonic neurogenesis%3B and a yeast hypothetical protein YNL023C. Has PF04524%2C Protein of unknown function%2CDUF586%3B IPR006533%2CRhs_Vgr%3BThis family contains a conserved region in several bacterial proteins of unknown function.%3B~High confidence in function and specificity	gene	gene3530	http://www.ncbi.nlm.nih.gov/gene/?term=azo3470
azo3471	azo3471		azo3471	3809502	3811634	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS02436 of R.solanacearum of 41%25 (trembl:Q8XUG9). No domains predicted. No signal peptide present. No TMH reported present.	gene	gene3531	http://www.ncbi.nlm.nih.gov/gene/?term=azo3471
azo3472	azo3472		azo3472	3811703	3813064	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS02435 of R. solanarcearum of 43%25 (trembl|Q8XUH0(SRS)). No domains predicted. Signal Peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene3532	http://www.ncbi.nlm.nih.gov/gene/?term=azo3472
azo3473	azo3473		azo3473	3813157	3814398	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS02435 of R. solanacearum of 47%25 (trembl:Q8XUH0). No domains predicted. No signal peptide. No TMHs	gene	gene3533	http://www.ncbi.nlm.nih.gov/gene/?term=azo3473
azo3474	azo3474		azo3474	3814395	3815732	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS02435 of R. solanarcearum of 44%25 (trembl|Q8XUH0(SRS)). No domains predicted. Signal Peptide present. No TMH reported present%3B~Conserved hypothetical protein	gene	gene3534	http://www.ncbi.nlm.nih.gov/gene/?term=azo3474
azo3475	azo3475		azo3475	3815864	3817339	-	putative MCP-domain signal transduction protein	Putative mcp-domain signal transduction protein%2C%3B~Conserved hypothetical protein	gene	gene3535	http://www.ncbi.nlm.nih.gov/gene/?term=azo3475
azo3476	azo3476		azo3476	3817314	3817835	-	putative signal-transduction sensor protein	Putative signal-transduction sensor protein%2C%3B~Conserved hypothetical protein	gene	gene3536	http://www.ncbi.nlm.nih.gov/gene/?term=azo3476
azo3477	azo3477		azo3477	3817884	3819047	-	conserved hypothetical protein		gene	gene3537	http://www.ncbi.nlm.nih.gov/gene/?term=azo3477
azo3478	azo3478		azo3478	3819301	3819513	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc2369 of R. solanacearum of 52%25 (trembl|Q8XWV1). no damians predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3538	http://www.ncbi.nlm.nih.gov/gene/?term=azo3478
azo3479	azo3479	fdhC	fdhC	3819510	3820550	-	putative formate dehydrogenase gamma subunit	Putative formate dehydrogenase gamma subunit. Homology to fdhC of W. succinogenes of 21%25 (TREMBL:P28180). Formate dehydrogenase is a membrane-bound complex%2C formed of at least three different subunits%3B probable heterotetramer of two FDHA%2C one FDHB and one FDHC. FdhC probably anchors the enzyme in the membrane and IS PROBABLY THE CYTOCHROME B556(FDO) COMPONENT. no good domains signal peptide 5 TMHs%3B~Family membership	gene	gene3539	http://www.ncbi.nlm.nih.gov/gene/?term=azo3479
azo3480	azo3480		azo3480	3820561	3820794	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc2371 of R. solanacearum of 36%25 (trembl|Q8XWU9). no doamins predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3540	http://www.ncbi.nlm.nih.gov/gene/?term=azo3480
azo3481	azo3481	fdhB	fdhB	3820791	3821399	-	probable formate dehydrogenase iron-sulfur subunit	probable formate dehydrogenase iron-sulfur subunit. Homology to fdhB of W. succinogenes of 63%25 (SWISSPROT:FDHB_WOLSU) THIS CHAIN IS AN ELECTRON TRANSFER UNIT CONTAINING 18 CYSTEINE RESIDUES 16 OF WHICH OCCUR IN THREE CLUSTERS. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450)%3B 7Fe ferredoxin (IPR000813)%3B 3Fe-4S ferredoxin (IPR001080) Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3541	http://www.ncbi.nlm.nih.gov/gene/?term=azo3481
azo3482	azo3482	fdhA2	fdhA2	3821419	3824322	-	probable formate dehydrogenase alpha subunit	Probable formate dehydrogenase alpha subunit. Homology to fdha of W. succinogenes of 44%25 (pir|S18213) The formate dehydrogenase catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655) Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain singal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3542	http://www.ncbi.nlm.nih.gov/gene/?term=azo3482
azo3483	azo3483		azo3483	3824336	3824572	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc2374 of R. solanacearum of 39%25 (trembl|Q8XWU6). no domains predicted. signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene3543	http://www.ncbi.nlm.nih.gov/gene/?term=azo3483
azo3484	azo3484	torD	torD	3824610	3825233	-	putative chaperone protein TorD	Putative Chaperone protein TorD. Homology to torD of E. coli of 23%25 (sprot|TORD_ECOLI). This family consists of several bacterial TorD proteins. Many prokaryotic molybdoenzymes%2C for example the TMAO reductase (TorA) of Escherichia coli%2C require the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold%2C allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor. Pfam: Cytoplasmic chaperon no signal peptide no TMHs%3B~Family membership	gene	gene3544	http://www.ncbi.nlm.nih.gov/gene/?term=azo3484
azo3485	azo3485		azo3485	3825247	3827352	-	conserved hypothetical iron-sulfur cluster-binding protein	Conserved hypothetical iron-sulfur binding protein. Homology to pb1470 of B. pertussis of 48%25 (trembl|Q7VY84). Transfer of electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450). Pfam: 4Fe-4S binding domain. no signal peptide. no TMHs%3B~Family membership	gene	gene3545	http://www.ncbi.nlm.nih.gov/gene/?term=azo3485
azo3486	azo3486		azo3486	3827941	3828564	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS01168 of R.solanacearum of 40%25 (trembl:Q8XWU3). No domains predicted. No signal peptide or TMH reported present.	gene	gene3546	http://www.ncbi.nlm.nih.gov/gene/?term=azo3486
azo3487	azo3487		azo3487	3828561	3829046	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to BPP1929 of B.parapertussis of 34%25 (trembl:34%25). No signal peptide or TMH reported present. No domains predicted.	gene	gene3547	http://www.ncbi.nlm.nih.gov/gene/?term=azo3487
azo3488	azo3488	fdhD	fdhD	3829147	3830031	+	putative formate dehydrogenase accessory protein	Putative formate dehydrogenase accessory protein. Homology to fdhD of W. succinogenes of 20%25 (sprot|FDHD_WOLSU). Necessary for formate dehydrogenase activity (By similarity). InterPro: Formate dehydrogenase subunit FdhD (IPR003786). Pfam: FdhD/NarQ family no signal peptide no TMHs%3B~Family membership	gene	gene3548	http://www.ncbi.nlm.nih.gov/gene/?term=azo3488
azo3489	azo3489	mobA	mobA	3830028	3830669	+	probable molybdopterin-guanine dinucleotide biosynthesis protein A	Probable molybdopterin-guanine dinucleotide biosynthesis protein A%2C 46%25 Identity to SwissProt%3BQ8Y0K5. TrEMBL%3BQ62LV3(44%25 Identity)Q63S71 Has PF01128%2CUncharacterized protein family UPF0007%3BIPR001228 ISPD_synthase%3B The bacterial ispD protein catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis%3B the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate.	gene	gene3549	http://www.ncbi.nlm.nih.gov/gene/?term=azo3489
azo3490	azo3490		azo3490	3830659	3831579	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA2947 of Azoarcus sp. EbN1 of 58%25 (gnl|keqq|eba:ebA2947(KEGG)). No domains predicted. No signal peptide. No TMHs.	gene	gene3550	http://www.ncbi.nlm.nih.gov/gene/?term=azo3490
azo3491	azo3491	mobB2	mobB2	3831592	3832095	-	molybdopterin-guanine dinucleotide biosynthesis protein B	Molybdopterin-guanine dinucleotide biosynthesis protein B. MAY BIND THE GUANINE NUCLEOTIDE REQUIRED FOR THE SYNTHESIS OF MOLYBDOPTERIN GUANINE DINUCLEOTIDE. InterPro: ATP/GTP-binding site motif A (P-loop) TIGRFAM: mobB: molybdopterin-guanine dinucleotide%3B~High confidence in function and specificity	gene	gene3551	http://www.ncbi.nlm.nih.gov/gene/?term=azo3491
azo3492	azo3492		azo3492	3832128	3834263	-	putative sensor histidine kinase	Putative sensor histidine kinase%2C His_kinA_N. IPR009082%3B His_kin_homodim. IPR003660%3B HAMP. IPR003594%3B ATPbind_ATPase. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. PF00672%3B HAMP. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00304%3B HAMP. TMHMM reporting 2 transmembrane helices.%3B~Specificity unclear	gene	gene3552	http://www.ncbi.nlm.nih.gov/gene/?term=azo3492
azo3493	azo3493	sasR	sasR	3834272	3835684	-	probable sigma-54 dependent response regulator	Probable sigma-54 dependent response regulator%2CAAA_ATPase. IPR008931%3B FIS-like. IPR002197%3B HTH_Fis. IPR010114%3B NtrC. IPR001789%3B Response_reg. IPR008298%3B Res_reg_NtrC. IPR002078%3B Sig54_interact. Pfam: PF02954%3B HTH_8. PF00072%3B Response_reg. PF00158%3B Sigma54_activat. SMART: SM00382%3B AAA. SM00448%3B REC. HTH reporting reporting nucleic acid binding motif.%3B~Family membership	gene	gene3553	http://www.ncbi.nlm.nih.gov/gene/?term=azo3493
azo3494	azo3494		azo3494	3835728	3836138	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to CV0155 of Chromobacterium violaceum of 69%25 (trembl|Q7P1Q8). Has PF03653%2C Uncharacterised protein family (UPF0093)%3BIPR005265%2C Cons_hypoth701:It appears the conserved hypothetical integral membrane proteins of this family are found only in gram negative bacteria and their function is unknown. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein	gene	gene3554	http://www.ncbi.nlm.nih.gov/gene/?term=azo3494
azo3495	azo3495		azo3495	3836156	3837034	-	conserved hypothetical protein	55%25%3B~Specificity unclear	gene	gene3555	http://www.ncbi.nlm.nih.gov/gene/?term=azo3495
azo3496	azo3496	ascD	ascD	3837056	3838075	+	probable CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehy drase reductase	Probable CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase. Homology to ascD of Y. pestis of 41%25 (sprot|ASCD_YERPE). PARTICIPATES IN THE CONVERSION OF CDP-6-DEOXY-D-GLYCERO- L-THREO-4-HEXULOSE TO 36-DIDEOXY-D-GLYCERO-D-GLYCERO-4-HEXULOSE TOGETHER WITH CDP-6-DEOXY-D-GLYCERO-L-THREO-4-HEXULOSE-3-DEHYDRASE (E1) IN TWO CONSECUTIVE STEPS. THE DETAILED MECHANISM OF E3 IS NOT YET RESOLVED. InterPro: Oxidoreductase FAD and NAD(P)-binding domain (IPR001433)%3B NadH:cytochrome b5 reductase (CBR) (IPR000134)%3B 2Fe-2S Ferredoxin (IPR006057)%3B Phenol hydroylase reductase family (IPR001221) Pfam: 2Fe-2S iron-sulfur cluster binding domain%3B Oxidoreductase FAD-binding doamin%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs TIGR00258: conserved hypothetical prote%3B~High confidence in function and specificity	gene	gene3556	http://www.ncbi.nlm.nih.gov/gene/?term=azo3496
azo3497	azo3497		azo3497	3838095	3839231	+	conserved hypothetical regulator protein	conserved hypothetical regulator protein%2C%3B~Conserved hypothetical protein	gene	gene3557	http://www.ncbi.nlm.nih.gov/gene/?term=azo3497
azo3498	azo3498		azo3498	3839343	3841346	+	putative sensor protein	Putative sensor protein%2C no significant homology. Best Hit SWISSPROT: sprot|ZRAS_SALTY (10%25 Salmonella typhimurium%2C ZraS) InterPro: IPR003594%3B ATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR005467%3B His_kinase. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. Signal P reporting signal peptide. Sensor protein zraS (EC 2.7.3.-). Member of the two-component regulatory system zraS/zraR. May function as a membrane-associated protein kinase that phosphorylates zraR in response to high concentrations of zinc or lead in the medium (By similarity).	gene	gene3558	http://www.ncbi.nlm.nih.gov/gene/?term=azo3498
azo3499	azo3499		azo3499	3841404	3843584	+	conserved hypothetical signaling protein	Conserved hypothetical signaling protein. Homology to Daro03001340 of Dechloromonas aromatica of 45%25 (gi|53730727|ref|ZP_00348932.1|(NBCI ENTREZ)). InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. IPR001789 Response_reg. IPR001633 EAL. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00563 EAL domain. PF00072 Response_reg. TIGRFAM: TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain.%3B~Conserved hypothetical protein	gene	gene3559	http://www.ncbi.nlm.nih.gov/gene/?term=azo3499
azo3500	azo3500	cyt2	cyt2	3843766	3844074	-	probable cytochrome c-552 precursor	probable cytochrome c-552 precursor. Homology to cyt of N. europaea of 52%25 (AAB46987). ELECTRON DONOR FOR CYTOCHROME CD1 IN NITRITE AND NITRATE RESPIRATION. InterPro: Cytochrome c class I (IPR003088)%3B cytochrome c%2Cclass ID (IPR002324) Pfam: cytochrome c signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3560	http://www.ncbi.nlm.nih.gov/gene/?term=azo3500
azo3501	azo3501	ureG	ureG	3844213	3844836	-	urease accessory protein UreG	Urease accessory protein ureG. Homology to ureG of K. aerognes of 71%25 (AAA25154). Probably facilitates nickel incorporation. Pfam: HypB/UreG nucleotide-binding domain Tigrfam: ureG: urease accessory protein UreG no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3561	http://www.ncbi.nlm.nih.gov/gene/?term=azo3501
azo3502	azo3502	ureF	ureF	3845086	3845790	-	probable urease accessory protein UreF	Probable urease accessory protein ureF. Homology to ureF of K. aerogenes of 41%25 (sprot|UREF_KLEAE). UreF is proposed to modulate the activation process of urease by eliminating the binding of nickel irons to noncarbamylated protein InterPro: UreF (IPR002639) Pfam: ureF probable signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3562	http://www.ncbi.nlm.nih.gov/gene/?term=azo3502
azo3503	azo3503		azo3503	3845787	3846266	-	probable urease accessory protein UreE	Region start changed from 3846285 to 3846240 (-45 bases)	gene	gene3563	http://www.ncbi.nlm.nih.gov/gene/?term=azo3503
azo3504	azo3504	ureC	ureC	3846323	3848029	-	urease alpha subunit	Urease alpha subunit. Homology to ureC of S. meliloti of 75%25 (sprot|URE1_RHIME). Urease (urea amidohydrolase%2C EC: 3.5.1.5) catalyses the hydrolysis of urea to form ammonia and carbamate. The enzyme consists of three structural domains: an alpha subunit (with the C-terminal two-thirds representing the catalytic domain)%2C a beta subunit and a gamma subunit. Pfam: Urease alpha-subunit%2C catalytic domain%3B Urease alpha-subunit N-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3564	http://www.ncbi.nlm.nih.gov/gene/?term=azo3504
azo3505	azo3505		azo3505	3848031	3848336	-	probable urease beta subunit	Region start changed from 3848352 to 3848310 (-42 bases)	gene	gene3565	http://www.ncbi.nlm.nih.gov/gene/?term=azo3505
azo3506	azo3506		azo3506	3848368	3848667	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03003730 of Dechloromonas aromatica of 40%25 (gi|46140350|ref|ZP_00203571.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs%3B~Family membership	gene	gene3566	http://www.ncbi.nlm.nih.gov/gene/?term=azo3506
azo3507	azo3507	ureA	ureA	3848714	3849016	-	urease gamma subunit	Urease gamma subunit. Homology to ureA of S. meliloti of 71%25 (sprot|URE3_RHIME) Urease (urea amidohydrolase%2C EC: 3.5.1.5) catalyses the hydrolysis of urea to form ammonia and carbamate. The enzyme consists of three structural domains: an alpha subunit (with the C-terminal two-thirds representing the catalytic domain)%2C a beta subunit and a gamma subunit. InterPro: Urease gamma subunit (IPR002026) Pfam: urease%2C gamma subunit Tigrfam: urease_gam: urease gamma subunit no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3567	http://www.ncbi.nlm.nih.gov/gene/?term=azo3507
azo3508	azo3508	ureD	ureD	3849059	3849916	-	putative urease accessory protein UreD	Putative urease accessory protein ureD. PROBABLY FACILITATES NICKEL INCORPORATION. SEEMS TO BE ESSENTIAL FOR UREOLYSIS. InterPro: UreD urease accessory protein Pfam: UreeD urease accessory protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3568	http://www.ncbi.nlm.nih.gov/gene/?term=azo3508
azo3509	azo3509	gch	gch	3850094	3850939	-	probable GTP cyclohydrolase I	TREMBL:Q7NRN0:59%25 identity TREMBL:Q8Y288: 57%25 identity GTP cyclohydrolase I catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes%2C of tetrahydrobiopterin in vertebrates%2C and of pteridine-containing pigments in insects. Hypothetical protein HI1291. IPR001474:GTP_cyclohydroI Pfam:Peptidase_M8:Leishmanolysin%3B Pfam:PF00925: GTP_cyclohydro2%3B TIGRFAM:S21p: ribosomal protein S21%3B~High confidence in function and specificity	gene	gene3569	http://www.ncbi.nlm.nih.gov/gene/?term=azo3509
azo3510	azo3510		azo3510	3850971	3853019	-	sulfatase family protein	InterPro: Sulfatase Membrane protein%3B~Specificity unclear	gene	gene3570	http://www.ncbi.nlm.nih.gov/gene/?term=azo3510
azo3511	azo3511		azo3511	3853231	3854097	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA0234 of P.aeruginosa of 43%25 (trembl:Q9I6Q4). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein	gene	gene3571	http://www.ncbi.nlm.nih.gov/gene/?term=azo3511
azo3512	azo3512	ssuA	ssuA	3854510	3855544	+	putative periplasmic-binding protein	Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import.Similar to the putative periplasmic-binding protein ssuA precursor in E.coli. SSUA_BACSU:P40400. InterPro:IPR000437%3B Prok_lipoprot_S. IPR001638%3B SBP_bac_3. SMART: SM00062%3B PBPb%3B 1. TMhelix:1. Signal peptide: present.%3B~Specificity unclear	gene	gene3572	http://www.ncbi.nlm.nih.gov/gene/?term=azo3512
azo3513	azo3513		azo3513	3855597	3856376	+	putative aliphatic sulfonates transport system%2CATP-binding protein	Region start changed from 3855391 to 3855571 (-180 bases)	gene	gene3573	http://www.ncbi.nlm.nih.gov/gene/?term=azo3513
azo3514	azo3514	ssuC	ssuC	3856392	3857165	+	putative aliphatic sulfonates transport system%2Cpermease protein	Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import. Probably responsible for the translocation of the substrate across the membrane.26%25 Similar to the aliphatic sulfonates permease protein%2C ssuC in E.coli. SWISSPROT:SSUC_ECOLI: P75851 InterPro:IPR000515%3B BPD_transp. Pfam:PF00528%3B BPD_transp%3B 1. InterPro:PF00528: Binding-protein-dependent transport systems inner membrane component. TMhelix:6%3B~Specificity unclear	gene	gene3574	http://www.ncbi.nlm.nih.gov/gene/?term=azo3514
azo3515	azo3515		azo3515	3857523	3857933	-	putative transcriptional regulatory protein	Putative transcriptional regulatory protein%2C%3B~Conserved hypothetical protein	gene	gene3575	http://www.ncbi.nlm.nih.gov/gene/?term=azo3515
azo3516	azo3516	wrbA3	wrbA3	3858050	3858604	+	probable tryptophan repressor binding protein (flavodoxin)	Flavoprotein wrbA3. TREMBL:Q8PGA8: 53%25 identity%2C66%25 similarity. wrbA3 is 26%25 identical to wrbA1 and 23%25 identical to wrbA2 InterPro: IPR008254%3B Flav_nitox_synth. IPR001226%3B Flavodoxin. Pfam:PF00258: flavodoxin%3B TIGR00301: NADP oxidoreductase coenzyme Number of transmembrane helices:0%3B~High confidence in function and specificity	gene	gene3576	http://www.ncbi.nlm.nih.gov/gene/?term=azo3516
azo3517	azo3517		azo3517	3858601	3860079	-	CAL96133.1	Region start changed from 3860179 to 3860053 (-126 bases)	gene	gene3577	http://www.ncbi.nlm.nih.gov/gene/?term=azo3517
azo3518	azo3518	cobD2	cobD2	3860126	3861145	+	putative cobalamin biosynthesis protein	Putative cobalamin biosynthesis protein%2C 48%25 Identity to TrEMBL%3B Q7NXQ1%2CQ63WA3%2CQ88M99. Has Pfam03186%2CCobD_Cbib%2C CobD/Cbib protein. IPR004485%3B This family includes CobD proteins from a number of bacteria%2C in Salmonella this protein is called Cbib. Salmonella CobD is a different protein. This protein is involved in cobalamin biosynthesis and is probably an enzyme responsible for the conversion of adenosylcobyric acid to adenosylcobinamide or adenosylcobinamide phosphate.	gene	gene3578	http://www.ncbi.nlm.nih.gov/gene/?term=azo3518
azo3519	azo3519	cobC	cobC	3861138	3862133	+	cobalamin biosynthesis protein	Cobalamin biosynthesis protein%2C CobC. CobC is probable involved in the conversion of cobyric acid to cobinamide.Similar to pir|B83486 (48%25) and to sprot|COBC_PSEDE (42%25). InterPro (PF00155): Aminotransferases class-I and II%3B~Specificity unclear	gene	gene3579	http://www.ncbi.nlm.nih.gov/gene/?term=azo3519
azo3520	azo3520	btuF	btuF	3862136	3863032	+	putative vitamin B12 transport protein	Vitamin B12 transport protein btuF precursor. 34%25 Similar to BtuF from E.coli. Part of the binding-protein-dependent transport system for vitamin B12. Acts with btuCD to transport vitamin B12 across the inner membrane. SWISSPROT:BTUF_ECOLI:P37028 InterPro:IPR002491%3B Peripla_BP. Pfam: PF01497%3B Peripla_BP_2%3B 1. Signal peptide: present. Contains 1 iron siderophore/cobalamin periplasmic-binding domain.%3B~High confidence in function and specificity	gene	gene3580	http://www.ncbi.nlm.nih.gov/gene/?term=azo3520
azo3521	azo3521		azo3521	3863039	3864103	-	conserved hypothetical peptidase	Conserved hypothetical peptidase. Homology to ebA3686 of Azoarcus sp. EbN1 of 45%25 (gnl|keqq|eba:ebA3686(KEGG)) . Pfam: Peptidase family M48. signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene3581	http://www.ncbi.nlm.nih.gov/gene/?term=azo3521
azo3522	azo3522	rhlE3	rhlE3	3864452	3866065	+	putative ATP-dependent RNA helicase	ATP-dependent RNA helicase rhlB (EC 3.6.1.-). Can carry out ATP-dependent unwinding of double stranded RNA. Has a role in RNA decay. Involved in the RNA degradosome a multi-enzyme complex important in RNA processing and messenger RNA degradation.%3B~High confidence in function and specificity	gene	gene3582	http://www.ncbi.nlm.nih.gov/gene/?term=azo3522
azo3523	azo3523	leuA2	leuA2	3866142	3867860	-	2-isopropylmalate synthase	Alpha-isopropylmalate synthase catalyses the first step in the biosynthesis of leucine%2C the condensation of acetyl-CoA and alpha- ketoisovalerate to form 2-isopropylmalate synthase. Similar to sprot|LEU1_PSEAE (59%25) and to sprot|LE12_RALSO (68%25). Pfam (PF00682): HMG-CoA Lyase-like family%3B~High confidence in function and specificity	gene	gene3583	http://www.ncbi.nlm.nih.gov/gene/?term=azo3523
azo3524	azo3524		azo3524	3868239	3868895	-	conserved hypothetical nitroreductase	Conserved hypothetical nitroreductase. Homology to cv1555 of C. violaceum of 72%25 (trembl|Q7NXS1). Involved in the reduction of nitrogen containing compounds. InterPro: Nitroreductase family (IPR000415). Pfam: Nitroreductase family. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3584	http://www.ncbi.nlm.nih.gov/gene/?term=azo3524
azo3525	azo3525		azo3525	3868933	3869736	-	conserved hypothetical protein	TREMBL:Q7NZN8 (43%25 identity%2C 53%25 similarity)%3B .	gene	gene3585	http://www.ncbi.nlm.nih.gov/gene/?term=azo3525
azo3526	azo3526		azo3526	3869994	3870761	+	conserved hypothetical flavoprotein	Conserved hypothetical flavoprotein. Homology to tde2498 of T. denticola of 46%25 (tremblnew|AAS13015). InterPro: Metallo-beta-lactamase superfamily (IPR001279). Pfam: Metallo-beta-lactamase superfamily. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3586	http://www.ncbi.nlm.nih.gov/gene/?term=azo3526
azo3527	azo3527		azo3527	3870767	3872938	+	GGDEF/EAL-domain containing protein	GGDEF/EAL-domain containing protein	gene	gene3587	http://www.ncbi.nlm.nih.gov/gene/?term=azo3527
azo3528	azo3528		azo3528	3873423	3874049	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to blr3274 of B. japonicum of 33%25 (gnl|keqq|bja:blr3274(KEGG)). Pfam: weak hit to CbiM%2C an integral membrane protein involved in cobalamin synthesis. TMHMM reporting 5 transmembrane helices. No signal peptide.%3B~Conserved hypothetical protein	gene	gene3588	http://www.ncbi.nlm.nih.gov/gene/?term=azo3528
azo3529	azo3529		azo3529	3874055	3874870	+	Precorrin-4 C11-methyltransferase	Probable Precorrin-4 C11-methyltransferase%2C47%25 Identity to TrEMBL%3BQ8GDX1%2C O26702. SwissProt%3BO87696. Has PF00590%2C Tetrapyrrole (Corrin/Porphyrin) Methylases%3BIPR000878 Cor/por_Metransf%3B This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function%2C including P45528. This family includes the methylase Dipthine synthase. Uroporphyrin-III C-methyltransferase (EC: 2.1.1.107) (SUMT)catalyzes the transfer of two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. SUMT is the first enzyme specific to the cobalamin pathway and precorrin-2 is a common intermediate in the biosynthesis of corrinoids such as vitamin B12%2C siroheme and coenzyme F430. The sequences of SUMT from a variety of bacterial and archaeal species are currently available. In species such as Bacillus megaterium (gene cobA)%2CPseudomonas denitrificans (cobA) or Methanobacterium ivanovii (gene corA) SUMT is a protein of about 25 to 30 kD. In Escherichia coli and related bacteria%2C the cysG protein%2C which is involved in the biosynthesis of siroheme%2C is a multifunctional protein composed of a N-terminal domain%2C probably involved in transforming precorrin-2 into siroheme%2C and a C-terminal domain which has SUMT activity.	gene	gene3589	http://www.ncbi.nlm.nih.gov/gene/?term=azo3529
azo3530	azo3530	cbiX	cbiX	3874867	3875796	+	conserved hypothetical protein cbiX	CbiX conserved hypothetical protein. Function unknown. Cobalamin biosynthesis pathway.%3B~Function unclear	gene	gene3590	http://www.ncbi.nlm.nih.gov/gene/?term=azo3530
azo3531	azo3531	cbiC	cbiC	3875800	3876477	+	Precorrin-8X methylmutase	Precorrin-8X methylmutase . CATALYZES THE CONVERSION OF PRECORRIN-8X TO HYDROGENOBYRINIC ACID%3B A Cobalamin biosynthesis precorrin isomerase. METHYL MIGRATION REACTION DURING THE TRANSFORMATION OF PRECORRIN-3 TO FORM COBYRINIC ACID (BY SIMILARITY). InterPro: Precorrin-8X methylmutase CbiC/CobH TIGRFAM: redox_disulf_1: redox-active disulfide%3B~High confidence in function and specificity	gene	gene3591	http://www.ncbi.nlm.nih.gov/gene/?term=azo3531
azo3532	azo3532	cbiD	cbiD	3876482	3877690	+	CbiD protein	Cobalamin biosynthesis protein. Function unknown. Pathway cobalamin biosynthesis. InterPro: CbiD protein TIGRFAM: cbiD: cobalamin biosynthesis protein CbiD%3B~High confidence in function and specificity	gene	gene3592	http://www.ncbi.nlm.nih.gov/gene/?term=azo3532
azo3533	azo3533	cbiE	cbiE	3877680	3878990	+	Precorrin-6Y C(5%2C15)-methyltransferase (decarboxylating)	Precorrin-6 methyltransferase (Precorrin-6Y methylase). CATALYZES THE METHYLATION OF BOTH C-5 AND C-15 IN PRECORRIN-6Y TO FORM PRECORRIN-8X. InterPro: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase%3B~High confidence in function and specificity	gene	gene3593	http://www.ncbi.nlm.nih.gov/gene/?term=azo3533
azo3534	azo3534	cbiL	cbiL	3878980	3879933	+	Precorrin-2 C20-methyltransferase	Precorrin-2 C20-methyltransferase (EC 2.1.1.130) (S-adenosyl-L- methionine:precorrin-2 methyltransferase) (SP2MT). METHYLATES PRECORRIN-2 AT THE C-20 POSITION TO PRODUCE PRECORRIN-3A.%3B~High confidence in function and specificity	gene	gene3594	http://www.ncbi.nlm.nih.gov/gene/?term=azo3534
azo3535	azo3535	cbiGa	cbiGa	3880286	3881062	+	putative Cobalamin (vitamin B12) biosynthesis CbiG protein%2C truncated	putative Cobalamin (vitamin B12) biosynthesis CbiG protein%2C truncated. Homology to the N-terminus of cbiG of b. magaterium of 39%25 (gi|3724046|emb|CAA04315.1|(nr)). Pfam: CibG%2C CbiG proteins are required for cobalamin (vitamin B 12 ) biosynthesis. IPR012407: Cobalamin (vitamin B12) biosynthesis CbiG. CbiG is one of the enzymes specific to the anaerobic route of cobalamin biosynthesis e.g.%2C in Salmonella typhimurium. While its specific role in this pathway is not known yet%2C it has been speculated that CbiG may participate in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6. This step requires opening of the delta-lactone ring%2Cexcision of acetaldehyde and C-1 methylation. Alternatively%2C it has been suggested that it may participate in ring contraction. no signal peptide. no TMHs%3B~Function unclear	gene	gene3595	http://www.ncbi.nlm.nih.gov/gene/?term=azo3535
azo3536	azo3536	cbiGb	cbiGb	3881071	3881472	+	putative Cobalamin (vitamin B12) biosynthesis CbiG protein%2C truncated	C-terminal part of CbiG protein. Cobalamin biosynthesis pathway.Precorrin methylase%3B~High confidence in function and specificity	gene	gene3596	http://www.ncbi.nlm.nih.gov/gene/?term=azo3536
azo3537	azo3537	cbiH	cbiH	3881469	3882437	+	Precorrin-3B C(17)-methyltransferase	Precorrin-3B C17- methyltransferase. METHYLTRANSFERASE THAT CATALYZES THE METHYLATION OF C-17 IN PRECORRIN-3B TO FORM PRECORRIN-4 (BY SIMILARITY). InterPro: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase%3B~High confidence in function and specificity	gene	gene3597	http://www.ncbi.nlm.nih.gov/gene/?term=azo3537
azo3538	azo3538		azo3538	3882434	3882826	+	conserved hypothetical ferredoxin	Conserved hypothetical ferredoxin. Homology to rsp0627 of R. solanacearum of 46%25 (trembl|Q8XS54). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3598	http://www.ncbi.nlm.nih.gov/gene/?term=azo3538
azo3539	azo3539		azo3539	3883237	3883746	-	hypothetical secreted protein	Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. no TMHs	gene	gene3599	http://www.ncbi.nlm.nih.gov/gene/?term=azo3539
azo3540	azo3540		azo3540	3883931	3885445	+	conserved hypothetical transcriptional regulatory protein	Conserved hypothetical transcriptional regulatory protein. Homology to rsc0599 of R. solanacearum of 63%25 (trembl|Q8Y1U0). InterPro: Bacterial regulatory proteins GntR family (IPR000524). Pfam: Bacterial regulatory protein%2C gntR family%3B Aminotransferase classI and II. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3600	http://www.ncbi.nlm.nih.gov/gene/?term=azo3540
azo3541	azo3541		azo3541	3885550	3886434	-	hypothetical methyltransferase	Hypothetical methyltransferase. no Homology of the entire protein with the data bank. Pfam: Putative methyltransferase This is a family of hypothetical proteins which are putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Interpro: SAM (and some other nucleotide) binding motif(IPR000051) no signal peptide no TMHs	gene	gene3601	http://www.ncbi.nlm.nih.gov/gene/?term=azo3541
azo3542	azo3542		azo3542	3886435	3887310	-	conserved hypothetical glutathione transferase	Conserved hypothetical glutathione transferase. Homology to psto0703 of P. syringae of 74%25 (trembl|Q889P6). Bacterial GSTs of known function often have a specific%2C growth-supporting role in biodegradative metabolism Pfam. Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal. no signal peptide. no TMHs%3B~Family membership	gene	gene3602	http://www.ncbi.nlm.nih.gov/gene/?term=azo3542
azo3543	azo3543		azo3543	3887435	3888298	-	hypothetical secreted protein	Hypothetical secreted protein. No homology of the entire protein to the data bank. Pfam: DUF1555 (domain of unknown function). signal peptide. no TMHs	gene	gene3603	http://www.ncbi.nlm.nih.gov/gene/?term=azo3543
azo3544	azo3544		azo3544	3888597	3889892	+	probable 4-hydroxybutyrate coenzyme A transferase	probable 4-hydroxybutyrate coenzyme A transferase. Homology to cat2 of C. kluyveri of 43%25 (sprot|CAT2_CLOKL) InterPro: Acetyl-CoA hydrolase/transferase (IPR003702) Pfam: Acetyl-CoA hydrolase/transferase no signal peptide no TMHS%3B~Family membership	gene	gene3604	http://www.ncbi.nlm.nih.gov/gene/?term=azo3544
azo3545	azo3545	yeaS	yeaS	3889954	3890610	+	conserved hypothetical transport membrane protein	Conserved hypothetical transport membrane protein. Homology to rsc1520 of R. solanacearum of 59%25 (trembl|Q8XZ84). Pfam: LysE type translocator. Tigrfam: 2A76: Homoserine/Threonine efflux protein. no signal peptide. probable 6 TMHs%3B~Family membership	gene	gene3605	http://www.ncbi.nlm.nih.gov/gene/?term=azo3545
azo3546	azo3546	ctaQ	ctaQ	3890614	3892104	-	probable carboxypeptidase TAQ	Probable carboxypeptidase TAQ. Homology to ctaQ of T. aquaticus of 40%25 (SWISSPROT:CTAQ_THEAQ) Releases amino acids sequentially from the C-terminus with a broad substrate specificity (except for proline). Pfam: carboxypeptidas Taq (M32) metallopep no signal peptide no TMHs%3B~Family membership	gene	gene3606	http://www.ncbi.nlm.nih.gov/gene/?term=azo3546
azo3547	azo3547		azo3547	3892274	3892729	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. signal peptide present.	gene	gene3607	http://www.ncbi.nlm.nih.gov/gene/?term=azo3547
azo3548	azo3548		azo3548	3892726	3893553	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to cv0063 of C. violaceum of 41%25 (trembl|Q7P1Z9(SRS)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3608	http://www.ncbi.nlm.nih.gov/gene/?term=azo3548
azo3549	azo3549	psD	psD	3893550	3894416	-	probable phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme :-Phosphatidylserine decarboxylase alpha chain%3B Phosphatidylserine decarboxylase beta chain]. Activity:-phosphatidyl-L-serine %3D phosphatidylethanolamine + CO2 Entry name:- SWISSPROT:PSD_ECOLI Prim. accession # P10740 Identities %3D 142/251 (56%25) InterPro:- IPR003817%3B PS_Dcarbxylase. IPR005221%3B PS_decarb. Pfam:- PF02666%3B PS_Dcarbxylase%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0%3B~High confidence in function and specificity	gene	gene3609	http://www.ncbi.nlm.nih.gov/gene/?term=azo3549
azo3550	azo3550	cobB	cobB	3894532	3895827	-	cobyrinic acid a%2Cc-diamide synthase	Cobyrinic acid AC-diamide synthase. Responsible for the amidation of carboxylic groups at position A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP is hydrogenolyzed for each amidation (By similarity). cbiA: cobyrinic acid ac-diamide synthase%3B~High confidence in function and specificity	gene	gene3610	http://www.ncbi.nlm.nih.gov/gene/?term=azo3550
azo3551	azo3551	cobA2	cobA2	3895824	3896717	-	Uroporphyrin-III C-methyltransferase	Uroporphyrin-III C-methyltransferase (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM). TIGRFAM: dph5: diphthine synthase%3B~High confidence in function and specificity	gene	gene3611	http://www.ncbi.nlm.nih.gov/gene/?term=azo3551
azo3552	azo3552	cobO	cobO	3896722	3897342	-	Cob(I)yrinic acid a%2Cc-diamide adenosyltransferase	Cob(I)alamin adenosyltransferase (Corrinoid adenosyltransferase) (Corrinoid ADOtransferase activity). REQUIRED FOR BOTH DE NOVO SYNTHESIS OF THE CORRIN RING FOR THE ASSIMILATION OF EXOGENOUS CORRINOIDS. PARTICIPATES IN THE ADENOSYLATION OF A VARIETY OF INCOMPLETE AND COMPLETE CORRINOIDS. InterPro: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TIGRFAM: cobA: cob(I)alamin adenosyltransferase%3B~High confidence in function and specificity	gene	gene3612	http://www.ncbi.nlm.nih.gov/gene/?term=azo3552
azo3553	azo3553		azo3553	3897371	3898168	-	putative ABC-type transporter%2C ATPase component	37%25 Similar to the iron(III)-hydroxamate transport membrane protein%2C fhuC in E.coli.Part of the ABC transporter complex fhuACDB involved in iron(III)-hydroxamate import. Probably responsible for energy coupling to the transport system. SWISSPROT:FHUC_ECOLI:P07821 InterPro:IPR003593%3B AAA_ATPase.IPR003439%3B ABC_transporter. Pfam:PF00005%3B ABC_tran%3B 1.%3B~High confidence in function and specificity	gene	gene3613	http://www.ncbi.nlm.nih.gov/gene/?term=azo3553
azo3554	azo3554		azo3554	3898168	3899148	-	putative ABC transporter system%2C permease protein	Region start changed from 3899167 to 3899122 (-45 bases)	gene	gene3614	http://www.ncbi.nlm.nih.gov/gene/?term=azo3554
azo3555	azo3555		azo3555	3899200	3901071	-	TonB-dependent receptor%2C putative	COBALAMIN RECEPTOR PROTEIN.%3B~Specificity unclear	gene	gene3615	http://www.ncbi.nlm.nih.gov/gene/?term=azo3555
azo3556	azo3556		azo3556	3901150	3903090	-	putative TonB-dependent receptor	Putative outer membrane TonB-dependent receptor%2Cprobably involved in iron metabolism. 20%25 Similar to the IrgA enterobactine outer membrane receptor in V. cholerae. INVOLVED IN THE INITIAL STEP OF IRON UPTAKE BY BINDING FERRIC VIBRIOBACTIN AN IRON CHELATIN SIDEROPHORE THAT ALLOWS V.CHOLERAE TO EXTRACT IRON FROM THE ENVIRONMENT. SWISSPROT:IRGA_VIBCH:P27772. 21%25 TonB_boxC. Pfam:PF00593%3B TonB_dep_Rec%3B 1.%3B~Specificity unclear	gene	gene3616	http://www.ncbi.nlm.nih.gov/gene/?term=azo3556
azo3557	azo3557	cobU	cobU	3903450	3904043	+	cobinamide kinase/cobinamide phosphate guanylyltransferase	Bifunctional cobalamin biosynthesis protein cobU [Includes: Cobinamide kinase%3B Cobinamide phosphate guanylyltransferase]. ATP-dependent phosphorylation of adenosylcobinamide and adds GMP to adenosylcobinamide phosphate. InterPro: Cobalbumin biosynthesis enzyme%3B~High confidence in function and specificity	gene	gene3617	http://www.ncbi.nlm.nih.gov/gene/?term=azo3557
azo3558	azo3558		azo3558	3904044	3905105	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to gsu0462 of G. sulfurreducens of 41%25 (AAR33794). probable 2 TMHs. no signal peptide. No domains predicted.%3B~Conserved hypothetical protein	gene	gene3618	http://www.ncbi.nlm.nih.gov/gene/?term=azo3558
azo3559	azo3559		azo3559	3905102	3906664	-	hypothetical membrane protein	Hypothetical membrane protein. No homology of the whole protein to the data bank. Has PF05987%2C Bacterial protein of unknown function (DUF898)%3BIPR010295 %3B This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative membrane proteins. No signal peptide 6 TMHs	gene	gene3619	http://www.ncbi.nlm.nih.gov/gene/?term=azo3559
azo3560	azo3560	cobT	cobT	3906932	3907978	+	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase). Catalyzes the synthesis of alpha-ribazole-5-phosphate from nicotinate mononucleotide (NAMN) and 56- dimethylbenzimidazole (DMB). InterPro: Phosphoribosyltransferase%3B~High confidence in function and specificity	gene	gene3620	http://www.ncbi.nlm.nih.gov/gene/?term=azo3560
azo3561	azo3561	cobS	cobS	3907990	3908760	+	cobalamin (5'-phosphate) synthase	Cobalamin synthase (EC 2.-.-.-). Joins Ado-cobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin) (By similarity). TIGRFAM: cobS: cobalamin 5-phosphate synthase%3B~High confidence in function and specificity	gene	gene3621	http://www.ncbi.nlm.nih.gov/gene/?term=azo3561
azo3562	azo3562		azo3562	3908745	3909296	+	putative alpha-ribazole phosphatase	Alpha-ribazole-5-phosphate phosphatase. Converts N1-(5-phospho-alpha-D-ribosyl)-5%2C6-dimethylbenzimidazole into N1-alpha-D-ribosyl-5%2C6-dimethylbenzimidazole%3B involved in the assembly of the nucleotide loop of cobalamin. 27%25 PG/BPGM_mutase. Pfam:PF00300%3B PGAM%3B 1.%3B~High confidence in function and specificity	gene	gene3622	http://www.ncbi.nlm.nih.gov/gene/?term=azo3562
azo3563	azo3563	waaE2	waaE2	3909437	3910396	+	ADP-heptose synthase	ADP-heptose synthase (EC 2.7.-.-).%3B~High confidence in function and specificity	gene	gene3623	http://www.ncbi.nlm.nih.gov/gene/?term=azo3563
azo3564	azo3564	rfaD	rfaD	3910439	3911416	+	putative ADP-L-glycero-D-mannoheptose-6-epimerase	59%25 Epimerase_Dh.IPR000205%3B NAD_BS. Pfam:PF01370%3B Epimerase%3B 1. Non-secretory protein.%3B~High confidence in function and specificity	gene	gene3624	http://www.ncbi.nlm.nih.gov/gene/?term=azo3564
azo3565	azo3565	waaF2	waaF2	3911413	3912468	+	ADP-heptose--LPS heptosyltransferase II	ADP-heptose--LPS heptosyltransferase II (EC 2.-.-.-).%3B~High confidence in function and specificity	gene	gene3625	http://www.ncbi.nlm.nih.gov/gene/?term=azo3565
azo3566	azo3566	waaC2	waaC2	3912476	3913567	+	lipopolysaccharide heptosyltransferase I	Lipopolysaccharide heptosyltransferase-1 (EC 2.-.-.-). HEPTOSE TRANSFER TO THE LIPOPOLYSACCHARIDE CORE. IT TRANSFERS THE INNNERMOST HEPTOSE TO [4-P](3-DEOXY-D-MANNO-OCTULOSONIC ACID)2-IVA. S18: ribosomal protein S18%3B~High confidence in function and specificity	gene	gene3626	http://www.ncbi.nlm.nih.gov/gene/?term=azo3566
azo3567	azo3567		azo3567	3913567	3914700	+	glucosyltransferase I	Region start changed from 3913496 to 3913541 (-45 bases)	gene	gene3627	http://www.ncbi.nlm.nih.gov/gene/?term=azo3567
azo3568	azo3568	waaP1	waaP1	3914697	3915533	+	lipopolysaccharide core biosynthesis protein	Lipopolysaccharide core biosynthesis protein rfaP. Specific function unclear. INVOLVED IN ATTACHMENT OF PHOSPHATE-CONTAINING SUBSTITUENTS TO THE INNER CORE.	gene	gene3628	http://www.ncbi.nlm.nih.gov/gene/?term=azo3568
azo3569	azo3569	waaP2	waaP2	3915530	3916279	+	lipopolysaccharide core biosynthesis protein	Lipopolysaccharide core biosynthesis protein rfaP. INVOLVED IN ATTACHMENT OF PHOSPHATE-CONTAINING SUBSTITUENTS TO THE INNER CORE. Specific function unclear.	gene	gene3629	http://www.ncbi.nlm.nih.gov/gene/?term=azo3569
azo3570	azo3570	waaP3	waaP3	3916293	3917066	+	lipopolysaccharide core biosynthesis protein	Lipopolysaccharide core biosynthesis protein. INVOLVED IN ATTACHMENT OF PHOSPHATE-CONTAINING SUBSTITUENTS TO THE INNER CORE. Specific function unclear.	gene	gene3630	http://www.ncbi.nlm.nih.gov/gene/?term=azo3570
azo3571	azo3571		azo3571	3917063	3918520	+	conserved hypothetical protein	InterPro: Eukaryotic protein kinase. Might be related to lipopolysaccharide biosynthesis%2C due to the presence of the gene in a lipopolysaccharide gene cluster.	gene	gene3631	http://www.ncbi.nlm.nih.gov/gene/?term=azo3571
azo3572	azo3572	msbA2	msbA2	3918579	3920381	-	lipid A export ATP-binding/permease protein	Lipid A export ATP-binding protein msbA. MsbA (TC 3.A.1.106.1) is involved in lipid A and possibly also glycerophospholipids export. The transmembrane domain (TMD) forms a pore in the inner membrane and the ATP-binding domain (NBD) is responible for energy generation. Similar to TREMBL:Q9HUG8%3B TREMBL:Q88D92%3B SWISSPROT:P60752 (39%25 identity). Pfam (PF00005): ABC transporter. Pfam (PF00664): ABC transporter transmembrane region. TMHMM reporting five transmembrane helices. TC (3.A.1.106): The Lipid Exporter (LipidE) Family.%3B~High confidence in function and specificity	gene	gene3632	http://www.ncbi.nlm.nih.gov/gene/?term=azo3572
azo3573	azo3573		azo3573	3920557	3921198	+	conserved hypothetical protein	Conserved hypothetical protein%2C 43%25 identity(65%25 similarity) to TrEMBL|Q9HUG7%2CHypothetical protein PA4998 [PA4998] [Pseudomonas aeruginosa]. Has PF06293:IPR010440:Lipopolysaccharide kinase (Kdo/WaaP) family%3BThese lipopolysaccharide kinases are related to protein kinases Pkinase. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica. No Signal Peptide or TMH reported present.	gene	gene3633	http://www.ncbi.nlm.nih.gov/gene/?term=azo3573
azo3574	azo3574		azo3574	3921206	3922345	-	hypothetical membrane protein	Hypothetical membrane protein. Homology to pspto4986 of P. syringae of 28%25 (trembl|Q87VF1(SRS)) No domains predicted signal peptide 9 TMHs	gene	gene3634	http://www.ncbi.nlm.nih.gov/gene/?term=azo3574
azo3575	azo3575		azo3575	3922367	3923167	-	pyruvyltransferase	Family membership	gene	gene3635	http://www.ncbi.nlm.nih.gov/gene/?term=azo3575
azo3576	azo3576		azo3576	3923220	3924176	-	conserved hypothetical protein		gene	gene3636	http://www.ncbi.nlm.nih.gov/gene/?term=azo3576
azo3577	azo3577		azo3577	3924173	3925075	-	hypothetical protein predicted by Glimmer/Critica	Possibly related to cell surface polysaccharide biosynthesis%2C due to the presence of the gene in a polysaccharide synthesis gene cluster.	gene	gene3637	http://www.ncbi.nlm.nih.gov/gene/?term=azo3577
azo3578	azo3578		azo3578	3925072	3926202	-	glycosyltransferase	Specificity unclear	gene	gene3638	http://www.ncbi.nlm.nih.gov/gene/?term=azo3578
azo3579	azo3579	nolU	nolU	3926195	3927979	-	putative carbamoyltransferase	Putative carbamoyltransferase. Homology to nolU of Rhizobium sp. NGR234 of 33%25 InterPro: Carbamoyltransferase Pfam: Carbamoyltransferase no signal peptide no TMHs%3B~Family membership	gene	gene3639	http://www.ncbi.nlm.nih.gov/gene/?term=azo3579
azo3580	azo3580		azo3580	3928043	3930106	-	putative acyltransferase family protein	Catalysis of the reactions of the type: acyl-carrier + reactant %3D acyl-reactant + carrier. Entry name : Q888M0 InterPro : IPR002656%3B Acyl_transf_3. Identity: 227/677 (33%25) Pfam PF01757%3B Acyl_transf_3%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.005(almost Yes) Number of predicted TMHs: 10%3B~Family membership	gene	gene3640	http://www.ncbi.nlm.nih.gov/gene/?term=azo3580
azo3581	azo3581	capD	capD	3930274	3932139	-	putative capsular polysaccharide biosynthesis protein	48%25 Polysac_CapD. Pfam:PF02719%3B Polysacc_synt_2%3B 1.%3B~High confidence in function and specificity	gene	gene3641	http://www.ncbi.nlm.nih.gov/gene/?term=azo3581
azo3582	azo3582		azo3582	3932553	3933590	-	membrane protein involved in cell envelope biogenesis	Similar to proteins annotated as phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (UDP- MurNAc-pentapeptide phosphotransferase). First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (By similarity).%3B~Function unclear	gene	gene3642	http://www.ncbi.nlm.nih.gov/gene/?term=azo3582
azo3583	azo3583	wbpV	wbpV	3933587	3934570	-	putative UDP-glucose 4-epimerase	50%25%3B~High confidence in function and specificity	gene	gene3643	http://www.ncbi.nlm.nih.gov/gene/?term=azo3583
azo3584	azo3584		azo3584	3934567	3935748	-	glycosyltransferase	InterPro: Glycosyl transferases group 1%3B~Specificity unclear	gene	gene3644	http://www.ncbi.nlm.nih.gov/gene/?term=azo3584
azo3585	azo3585		azo3585	3935717	3936460	-	glycosyltransferase	Putative glycosyl transferase MJ1057 (EC 2.-.-.-). InterPro: Glycosyl transferase family 2%3B~Family membership	gene	gene3645	http://www.ncbi.nlm.nih.gov/gene/?term=azo3585
azo3586	azo3586	fcl1	fcl1	3936457	3937452	-	putative GDP-fucose synthetase	GDP-L-fucose synthetase (GDP-4-keto-6-deoxy-D-mannose-35-epimerase -4-reductase). Two step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose involving an epimerase and a reductase reaction.54%25 ADH_short.IPR001509%3B Epimerase_Dh. Pfam:PF01370%3B Epimerase. Non-secretory protein.%3B~High confidence in function and specificity	gene	gene3646	http://www.ncbi.nlm.nih.gov/gene/?term=azo3586
azo3587	azo3587	gmd	gmd	3937403	3938488	-	GDP-mannose 4%2C6-dehydratase	[EC:4.2.1.47] %2C GDP-mannose 4%2C6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase).%2C GDP-mannose 4%2C6-dehydratase%2C NAD dependent epimerase/dehydratase family%2Cgmd: GDP-mannose 4%2C6-dehydratase%3B~High confidence in function and specificity	gene	gene3647	http://www.ncbi.nlm.nih.gov/gene/?term=azo3587
azo3588	azo3588		azo3588	3938557	3940620	-	hypothetical membrane protein	Hypothetical membrane protein. No homology to the data bank. No domains predicted. no signal peptide. 9 TMHs%3B~Conserved hypothetical protein	gene	gene3648	http://www.ncbi.nlm.nih.gov/gene/?term=azo3588
azo3589	azo3589		azo3589	3940575	3941408	-	glycosyltransferase	InterPro: Glycosyl transferase family 2. Slight similarity to dolicholphosphate mannosyltransferases%2Cmight therefore transfer a sugar moiety directly to a lipid carrier.%3B~Specificity unclear	gene	gene3649	http://www.ncbi.nlm.nih.gov/gene/?term=azo3589
azo3590	azo3590	emrE	emrE	3941422	3941778	-	hypothetical multidrug efflux transporter protein	Low similarity with the EmrE protein (Methyl viologen resistance protein C)(Ethidium resistance protein)in E.coli. Multidrug transporter. Confers resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. Probably prevents the incorporation of methyl viologen into cells. Involved in ethidium bromide efflux. EMRE_ECOLI:P23895. InterPro:IPR000390%3B Smr. Pfam: PF00893%3B Multi_Drug_Res%3B 1. Signal peptide present. TMHelix: 4.%3B~High confidence in function and specificity	gene	gene3650	http://www.ncbi.nlm.nih.gov/gene/?term=azo3590
azo3591	azo3591		azo3591	3941775	3942605	-	sugar or sugar nucleotide oxidoreductase	Family membership	gene	gene3651	http://www.ncbi.nlm.nih.gov/gene/?term=azo3591
azo3592	azo3592		azo3592	3942602	3943387	-	hypothetical protein predicted by Glimmer/Critica	Gene located in a gene cluster related to an unidentified cell surface polysaccharide	gene	gene3652	http://www.ncbi.nlm.nih.gov/gene/?term=azo3592
azo3593	azo3593		azo3593	3943384	3944523	-	hypothetical membrane protein	Hypothetical membrane protein. No good homology of the entire protein with the data bank. No domains predicted. No signal peptide. 1 TMH	gene	gene3653	http://www.ncbi.nlm.nih.gov/gene/?term=azo3593
azo3594	azo3594		azo3594	3944541	3945566	-	glycosyltransferase	Putative glycosyl transferase sll0501 (EC 2.-.-.-).%3B~Specificity unclear	gene	gene3654	http://www.ncbi.nlm.nih.gov/gene/?term=azo3594
azo3595	azo3595		azo3595	3945793	3948288	-	Hypothetical protein predicted by Glimmer/Critica		gene	gene3655	http://www.ncbi.nlm.nih.gov/gene/?term=azo3595
azo3596	azo3596	wzt	wzt	3948285	3949694	-	putative polysaccharide export transport system ATP-binding protein	44%25 AAA_ATPase.IPR003439%3B ABC_transporter. Pfam:PF00005%3B ABC_tran%3B 1. ProDom:PD000006%3B ABC_transporter%3B 1. SMART:SM00382%3B AAA%3B 1.	gene	gene3656	http://www.ncbi.nlm.nih.gov/gene/?term=azo3596
azo3597	azo3597	wzm	wzm	3949684	3950472	-	putative permease component of an ABC polysaccharide exporter	51%25 ABC_transpt2. Pfam:PF01061%3B ABC2_membrane%3B 1. TMhelix:6. Non-secretory protein.%3B~Specificity unclear	gene	gene3657	http://www.ncbi.nlm.nih.gov/gene/?term=azo3597
azo3598	azo3598		azo3598	3950578	3952557	-	hypothetical protein predicted by Glimmer/Critica	Possibly related to cell surface biosynthesis%2C ue to the location of he gene in a polysaccharide synthesis gene cluster.	gene	gene3658	http://www.ncbi.nlm.nih.gov/gene/?term=azo3598
azo3599	azo3599	fcl2	fcl2	3952636	3953631	-	putative GDP-fucose synthetase	49%25%3B~High confidence in function and specificity	gene	gene3659	http://www.ncbi.nlm.nih.gov/gene/?term=azo3599
azo3600	azo3600	polA	polA	3953917	3956673	-	DNA polymerase I	DNA polymerase I (EC 2.7.7.7) (POL I). IN ADDITION TO POLYMERASE ACTIVITY THIS DNA POLYMERASE EXHIBITS 3 TO 5 AND 5 TO 3 EXONUCLEASE ACTIVITY. IT IS ABLE TO UTILIZE NICKED CIRCULAR DUPLEX DNA AS A TEMPLATE AND CAN UNWIND THE PARENTAL DNA STRAND FROM ITS TEMPLATE. InterPro: Replicative DNA polymerase%3B~High confidence in function and specificity	gene	gene3660	http://www.ncbi.nlm.nih.gov/gene/?term=azo3600
azo3601	azo3601		azo3601	3956755	3957477	+	conserved hypothetical protein	Hypothetical protein PA4923. TREMBL:Q82UL5: 68%25 identity%2C 82%25 similarity InterPro:IPR005269%3B Cons_hypoth730. Pfam:PF03641%3B Lysine_decarbox%3B 1. TIGRFAMs:TIGR00730%3B Cons_hypoth730 bcl-2: Apoptosis regulator Non-secretory protein with signal peptide probability 0(Signal P predicted9 Absence of transmembrane helices (TMHHH predicted)%3B~Function unclear	gene	gene3661	http://www.ncbi.nlm.nih.gov/gene/?term=azo3601
azo3602	azo3602		azo3602	3957597	3957920	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to CV0777 of C.violaceum of 42%25 (trembl|Q7NZZ2(SRS)). No domains predicted. Signal peptide present. No TMH reported.%3B~Conserved hypothetical protein	gene	gene3662	http://www.ncbi.nlm.nih.gov/gene/?term=azo3602
azo3603	azo3603		azo3603	3957899	3958459	+	conserved hypothetical protein		gene	gene3663	http://www.ncbi.nlm.nih.gov/gene/?term=azo3603
azo3604	azo3604	thrB	thrB	3958480	3959433	+	probable homoserine kinase	Probable homoserine kinase. Homology to thrB of M. flagellum of 51%25 (sprot|KHSE_METFL). CATALYTIC ACTIVITY: ATP + L-homoserine %3D ADP + O-phospho-L-homoserine. Pfam: Aminoglycoside phosphotransferase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3664	http://www.ncbi.nlm.nih.gov/gene/?term=azo3604
azo3605	azo3605		azo3605	3959528	3960298	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to cv0192 of C. violaceum of 32%25 (trembl|Q7P1M1(SRS)). No domains predicted. No signal peptide. 6 TMHs.%3B~Conserved hypothetical protein	gene	gene3665	http://www.ncbi.nlm.nih.gov/gene/?term=azo3605
azo3606	azo3606		azo3606	3960306	3961076	+	conserved hypothetical membrane protein	Conserved hypothetical protein. Homology to ne1472 of N. europaea of 33%25 (trembl|Q82UL2(SRS)). No domains predicted. No signal peptide. 6 TMHs.	gene	gene3666	http://www.ncbi.nlm.nih.gov/gene/?term=azo3606
azo3607	azo3607	nadD	nadD	3961057	3961740	+	Nicotinate-nucleotide adenylyltransferase	Probable nicotinate-nucleotide adenylyltransferase (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase). Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (By similarity). InterPro: Cytidylyltransferase%3B~High confidence in function and specificity	gene	gene3667	http://www.ncbi.nlm.nih.gov/gene/?term=azo3607
azo3608	azo3608		azo3608	3961760	3962125	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to NE0358 of Nitrosomonas europaea of 55%25 (trembl:Q82XC6). Pfam:Domain of unknown function DUF143. This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 100 amino acids long. Tigrfam: TIGR00090 iojap-related protein. This model describes a strictly bacterial family of proteins related to iojap from plants. The gene iojap is a pattern-striping gene in maize%2C reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids%2Cbut the plastid-encoded one	gene	gene3668	http://www.ncbi.nlm.nih.gov/gene/?term=azo3608
azo3609	azo3609		azo3609	3962122	3962592	+	putative secreted protein	Conserved hypothetical protein. Homology to BP2313 of B.pertussis of 61%25 (trembl:Q7VWE4) Has PF02590%2CUncharacterized ACR%2C COG1576%3BIPR003742%2CDUF163%3BFamily of uncharacterized proteins of unknown function. Signal peptide or TMH not present.	gene	gene3669	http://www.ncbi.nlm.nih.gov/gene/?term=azo3609
azo3610	azo3610	def2	def2	3962595	3963128	+	probable peptide deformylase	Probable peptide deformylase (EC 3.5.1.88). Homology to def of E. coli of 42%25 (sprot|DEF_ECOLI(SRS)). Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions Interpro: Formylmethionine deformylase (IPR000181) Pfam: Polypeptide deformylase Tigrfam: pept_deformyl: polypeptide deformylase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3670	http://www.ncbi.nlm.nih.gov/gene/?term=azo3610
azo3611	azo3611		azo3611	3963195	3963815	+	Maf-like protein	Homology to Maf-like proteins%3B~Family membership	gene	gene3671	http://www.ncbi.nlm.nih.gov/gene/?term=azo3611
azo3612	azo3612	cafA	cafA	3963871	3965382	+	putative ribonuclease	Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial filament protein). INVOLVED IN PROCESSING OF THE 5END OF 16S RRNA. COULD BE INVOLVED IN CHROMOSOME SEGREGATION AND CELL DIVISION. IT MAY BE ONE OF THE COMPONENTS OF THE CYTOPLASMIC AXIAL FILAMENTS BUNDLES OR MERELY REGULATE THE FORMATION OF THIS STRUCTURE.%3B~Family membership	gene	gene3672	http://www.ncbi.nlm.nih.gov/gene/?term=azo3612
azo3613	azo3613	menA	menA	3965391	3966347	+	1%2C4-dihydroxy-2-naphthoate octaprenyltransferase	Probable 14-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.-) (DHNA-octaprenyltransferase). CONVERSION OF 1%2C4-DIHYDROXY-2-NAPHTHOATE (DHNA) TO DIMETHYLMENAQUINONE (DMK). ATTACHES OCTAPRENYLPYROPHOSPHATE A MEMBRANE-BOUND 40-CARBON SIDE CHAIN TO DHNA. THE CONVERSION OF DHNA TO DMK PROCEEDS IN THREE STAGES: THE REMOVAL OF THE CARBOXYL GROUP OF DHNA AS CO2 THE ATTACHMENT OF THE ISOPRENOID SIDE CHAIN AND A QUINOL-TO-QUINONE OXIDATION WHICH IS THOUGHT TO BE SPONTANEOUS (BY SIMILARITY). TIGRFAM: menA: 14-dihydroxy-2-naphthoate octaprenyltransferase%3B~Specificity unclear	gene	gene3673	http://www.ncbi.nlm.nih.gov/gene/?term=azo3613
azo3614	azo3614		azo3614	3966362	3966727	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PA0359 of Pseudomonas aeruginosa of 35%25 (trembl|Q9I6D5(SRS)). No domains predicted. signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene3674	http://www.ncbi.nlm.nih.gov/gene/?term=azo3614
azo3615	azo3615	ompR3	ompR3	3966875	3967591	+	DNA-binding response regulator	Transcriptional regulatory protein%2C Trans_reg_C. IPR001789 Response_reg. Pfam: PF00486%3B trans_reg_C. PF00072 response_reg. SMART: SM00448 REC.%3B~Specificity unclear	gene	gene3675	http://www.ncbi.nlm.nih.gov/gene/?term=azo3615
azo3616	azo3616	envZ3	envZ3	3967591	3968691	+	putative sensor histidine kinase	Putative sensor histidine kinase%2C ATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR005467%3B His_kinase. IPR003661%3B His_kinA_N. IPR009082%3B His_kin_homodim. IPR003660%3B HAMP. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. PF00672%3B HAMP. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00304%3B HAMP. TMHMM reporting 2 transmembrane helices.%3B~Specificity unclear	gene	gene3676	http://www.ncbi.nlm.nih.gov/gene/?term=azo3616
azo3617	azo3617		azo3617	3968809	3969477	+	putative calcium binding protein	Putative calcium binding protein%2C40%25 similarity to TrEMBL%3BO22845. Has 3 EFh|EF-hand%2C calcium binding motif%3B(SMART|SM00054):Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both side by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1%2C 3%2C 5%2C 7%2C 9 and 12%3B these residues are denoted by X%2C Y%2C Z%2C -Y%2C -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand). NO Signal peptide or TMh reported present.%3B~Family membership	gene	gene3677	http://www.ncbi.nlm.nih.gov/gene/?term=azo3617
azo3618	azo3618	gcvA	gcvA	3969509	3970477	-	glycine cleavage system transcriptional activator	Glycine cleavage system transcriptional activator (Gcv operon activator). Regulatory protein for the glycine cleavage system operon (gcv). Mediates activation og gcv by glycine and repression by purines. GcvA is negatively autoregulated. Bind to three sites upstream of the gcv promoter. Similar to SWISSPROT: sprot|GCVA_ECOLI (39%25 Escherichia coli%2C glycine cleavage system transcriptional activator (gcv operon activator)) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2ClysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene3678	http://www.ncbi.nlm.nih.gov/gene/?term=azo3618
azo3619	azo3619		azo3619	3970592	3970765	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs	gene	gene3679	http://www.ncbi.nlm.nih.gov/gene/?term=azo3619
azo3620	azo3620		azo3620	3970934	3971842	-	putative adenylate/guanylate cyclase	Putative adenylate/ guanylate cyclase%2C%3B~Function unclear	gene	gene3680	http://www.ncbi.nlm.nih.gov/gene/?term=azo3620
azo3621	azo3621	tag	tag	3971984	3972556	-	DNA-3-methyladenine glycosidase I	DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I constitutive) (TAG I) . HYDROLYSIS OF THE DEOXYRIBOSE N-GLYCOSIDIC BOND TO EXCISE 3-METHYLADENINE FROM THE DAMAGED DNA POLYMER FORMED BY ALKYLATION LESIONS. InterPro: DNA-3-methyladenine glycosylase I%3B~High confidence in function and specificity	gene	gene3681	http://www.ncbi.nlm.nih.gov/gene/?term=azo3621
azo3622	azo3622	ptxR	ptxR	3972582	3973490	-	probable transcriptional regulator%2C LysR family	Probable transcriptional regulator%2C LysR family%2C%3B~Family membership	gene	gene3682	http://www.ncbi.nlm.nih.gov/gene/?term=azo3622
azo3623	azo3623	adhC	adhC	3973580	3974692	+	alcohol dehydrogenase classIII	Alcohol dehydrogenase class III (Formaldehyde dehydrogenase (glutathione)). Homology to fdh of E. coli of 72%25 (trembl|Q59399) CLASS-III ADH IS REMARKABLY INEFFECTIVE IN OXIDIZING ETHANOL BUT IT READILY CATALYZES THE OXIDATION OF LONG-CHAIN PRIMARY ALOCHOLS AND THE OXIDATION OF S-(HYDROXYMETHYL) GLUTATHIONE (BY SIMILARITY). InterPro: Zinc-containing alcohol dehydrogenase superfamily (IPR002085) Zinc-containing alcohol dehydrogenase (IPR002328) Pfam: zinc-binding dehydrogenase Tigrfam: tdh: L-threonine 3-dehydrogenase. no signal peptide. 2 TMHs%3B~High confidence in function and specificity	gene	gene3683	http://www.ncbi.nlm.nih.gov/gene/?term=azo3623
azo3624	azo3624		azo3624	3974733	3975587	+	probable esterase	TREMBL:Q88ME4: 72%25 identity%2C83%25 similarity Esterase D (EC 3.1.1.1). This family contains several seemingly unrelated proteins%2C including human esterase D%3B mycobacterial antigen 85%2C which is responsible for the high affinity of mycobacteria to fibronectin%3B Corynebacterium glutamicum major secreted protein PS1%3B and hypothetical proteins from Escherichia coli%2C yeast%2Cmycobacteria and Haemophilus influenzae. InterPro:IPR000801%3B Esterase_put. IPR000379%3B Ser_estrs. Pfam: PF00756%3B Esterase%3B InterPro: Putative esterase Absence of signal peptide and transmembrane helices%3B~Specificity unclear	gene	gene3684	http://www.ncbi.nlm.nih.gov/gene/?term=azo3624
azo3625	azo3625		azo3625	3975594	3976508	-	hypothetical membrane protein	Hypothetical membrane protein. no homology to the data bank no doamains predicted no signal peptide 1 TMH	gene	gene3685	http://www.ncbi.nlm.nih.gov/gene/?term=azo3625
azo3626	azo3626		azo3626	3976698	3977960	+	conserved hypothetical chaperon protein	Conserved hypothetical chaperon protein: Homology to cv2395 of C. violaceum of 62%25 (trembl|Q7NVE8). InterPro: Heat shock protein hsp70 (IPR001023). Pfam: Hsp70 protein. no signal peptide. no TMHs%3B~Family membership	gene	gene3686	http://www.ncbi.nlm.nih.gov/gene/?term=azo3626
azo3627	azo3627		azo3627	3978018	3978974	-	conserved hypothetical SLT domain protein	Conserved hypothetical SLT domain protein. Homology to NE2226 of N.europaea of 42%25 (trembl|Q82SS9(SRS). Pfam: Transglycosylase SLT domain. Bacterial lytic transglycosylases degrade murein via cleavage of the beta-1%2C4- glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine%2C with the concomitant formation of a 1%2C6-anhydrobond in the muramic acid residue. Escherichia coli has at least three different lytic transglycosylases: two soluble isozymes of 65 Kd and 35 Kd and a membrane-bound enzyme of 38 Kd. The sequence of the 65 Kd enzyme (gene slt) has been determined. A domain of about 90 residues located near the C-terminal section of slt was recently shown to be present in a number of other prokaryotic and phage proteins. This SLT domain shared by these proteins is involved in catalytic activity. The most conserved part of this domain contains the contains two conserved serines and a glutamate which form part of this active site signature. no TMHs. signal peptide%3B~Conserved hypothetical protein	gene	gene3687	http://www.ncbi.nlm.nih.gov/gene/?term=azo3627
azo3628	azo3628		azo3628	3979292	3979768	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank no domains predicted no signal peptide no TMHs	gene	gene3688	http://www.ncbi.nlm.nih.gov/gene/?term=azo3628
azo3629	azo3629	crgA	crgA	3979900	3980787	-	transcriptional regulator%2C LysR family	Transcriptional regulator%2C LysR family%2C%3B~High confidence in function and specificity	gene	gene3689	http://www.ncbi.nlm.nih.gov/gene/?term=azo3629
azo3630	azo3630	ydeA	ydeA	3980888	3982096	+	putative transmembrane efflux protein	Sugar efflux transporter protein%2C involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites. Transports L-arabinose and to a lesser extent IPTG. Seems to contribute to the control of the arabinose regulon. 26%25 MFS.IPR005828%3B Sub_transporter. Belongs to major facilitator superfamily. SotB (TC 2.A.1.2) family. Signal peptide:present. TMHelix:12.%3B~Specificity unclear	gene	gene3690	http://www.ncbi.nlm.nih.gov/gene/?term=azo3630
azo3631	azo3631	yafB	yafB	3982119	3982925	+	probable 2%2C5-diketo-D-gluconate reductase B	25-diketo-D-gluconic acid reductase B (EC 1.1.1.274) (25-DKG reductase B) (25-DKGR B) (25DKGR-B) (AKR5D). TREMBL:Q8Y090: 67%25 identity%2C 78%25 similarity. Catalyzes the reduction of 25-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG) (By similarity). subunit:monomer (by similarity). subcellular location:cytoplasmic (by similarity). 2-keto-l-gulonic acid is a key intermediate in the production of l-ascorbic acid (vitamin c). belongs to the aldo/keto reductase family InterPro:IPR001395%3B Aldo/ket_red. Pfam:PF00248%3B aldo_ket_red%3B 1. PRINTS PR00069%3B ALDKETRDTAS ribH: riboflavin synthase beta subunit No signal peptide (non secretory protein) predicted by Signal P and no transmembrane helices (predicted by TMHMM).%3B~High confidence in function and specificity	gene	gene3691	http://www.ncbi.nlm.nih.gov/gene/?term=azo3631
azo3632	azo3632		azo3632	3982978	3984780	+	ABC transporter permease and ATP-binding protein	ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q89UA9 (44%25 identity)%3B TREMBL:Q92M72 (44%25 identity)%3B SWISSPROT:Q9JI39 (32%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR001140): ABC transporter%2Ctransmembrane region. Pfam (PF00664): ABC transporter transmembrane region. Pfam (PF00005): ABC transporter. TMHMM reporting six transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~High confidence in function and specificity	gene	gene3692	http://www.ncbi.nlm.nih.gov/gene/?term=azo3632
azo3633	azo3633		azo3633	3985096	3985944	+	hypothetical secreted protein	Hypothetical secreted protein. No significant homology over the entier protein. signal peptide no TMHs	gene	gene3693	http://www.ncbi.nlm.nih.gov/gene/?term=azo3633
azo3634	azo3634		azo3634	3986061	3988160	-	probable D-(-)-3-hydroxybutyrate oligomer hydrolase	Probable D-(-)-3-hydroxybutyrate oligomer hydrolase. Homology to a orf of Ralstonia pickettii of 48%25 (gi|2154711|dbj|BAA20331.1|(NCBI ENTREZ)). Catalysis of the reaction: (R)-3-((R)-3-hydroxybutanoyloxy)butanoate + H2O %3D 2 (R)-3-hydroxybutanoate. No doamis predicted. Signal peptide. TMHs in signal peptide.%2C%3B~Family membership	gene	gene3694	http://www.ncbi.nlm.nih.gov/gene/?term=azo3634
azo3635	azo3635		azo3635	3988511	3989053	+	conserved hypothetical acetyltransferase	Conserved hypothetical acetyltransferase. Homology to cv2337 of C. violaceum of 43%25 (AAQ60009). InterPro: GCN5-related N-acetyltransferase (IPR000182). Pfam: Acetyltransferase (GNAT) family. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3695	http://www.ncbi.nlm.nih.gov/gene/?term=azo3635
azo3636	azo3636	glmS	glmS	3989120	3990949	-	glucosamine-fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6- phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-phosphate synthase). Catalyzes the first step in hexosamine metabolism converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source (By similarity). InterPro: Glutamine amidotransferase class-II TIGR00274: glucokinase regulator-rela%3B~High confidence in function and specificity	gene	gene3696	http://www.ncbi.nlm.nih.gov/gene/?term=azo3636
azo3637	azo3637	glmU	glmU	3990992	3992350	-	UDP-N-acetylglucosamine pyrophosphorylase / diamine N-acetyltransferase	Bifunctional glmU protein [Includes: UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase)%3B Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.57)]. Bifunctional enzyme responsible for the acetylation of Glc-N-1-P to give GlcNAc-1-P and the synthesis of UDP-GlcNAc. InterPro: ADP-glucose pyrophosphorylase ispD: 4-diphosphocytidyl-2C-methyl-D-e%3B~High confidence in function and specificity	gene	gene3697	http://www.ncbi.nlm.nih.gov/gene/?term=azo3637
azo3638	azo3638	pta	pta	3992536	3993945	+	conserved hypothetical phosphate acetyltransferase	Conserved hypothetical phosphate acetyltransferase. Homology to pta of R. palustris of 63%25 (tremblnew|CAE30007). InterPro: Phosphate acetyl/butaryl transferase (IPR002505)%3B MaoC-like dehydrogenase domain (IPR002539). Pfam: MaoC like domain%3B Phosphate acetyl/butaryl transferase. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3698	http://www.ncbi.nlm.nih.gov/gene/?term=azo3638
azo3639	azo3639	ackA	ackA	3993942	3995129	+	probable acetate kinase	probable acetate kinase. Homology to ackA of s. meliloti of 46%25 (sprot|ACK2_RHIME) Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate %3D ADP + acetyl phosphate. InterPro: Acetate kinase (IPR004372)%3B acetate and butyrate kinase (IPR000890) Pfam: Acetokinase family Tigrfam: ackA: acetate kinase no singal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3699	http://www.ncbi.nlm.nih.gov/gene/?term=azo3639
azo3640	azo3640		azo3640	3995147	3995914	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. TREMBL:Q9A2S0: 40%25 identity InterPro:IPR002781%3B DUF81. Pfam:PF01925%3B DUF81. Non secretory protein (signal peptide probablity:0.035) and presence of 7 transmembrane helices (TMHMM predicted).%3B~Conserved hypothetical protein	gene	gene3700	http://www.ncbi.nlm.nih.gov/gene/?term=azo3640
azo3641	azo3641	gltD	gltD	3996223	3997689	-	glutamate synthase (small chain) oxidoreductase	Glutamate synthase [NADPH] precursor (EC 1.4.1.13) (NADPH-GOGAT)small chain. TREMBL:Q8XV67-77%25 identity%2C 87%25 similarity InterPro:IPR006005- One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (EC: 1.4.1.13) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP+ %3D L-glutamine + 2-oxoglutarate + NADPH + H+ gid: gid protein Pfam:FAD binding domain%2CThi family%2C 4Fe-4S binding domain%2CKTN-NAD binding domain%2C DUF127.%3B~High confidence in function and specificity	gene	gene3701	http://www.ncbi.nlm.nih.gov/gene/?term=azo3641
azo3642	azo3642	gltB	gltB	3997694	4002367	-	probable Ferredoxin-dependent glutamate synthase	Ferredoxin-dependent glutamate synthase%2C%3B~Specificity unclear	gene	gene3702	http://www.ncbi.nlm.nih.gov/gene/?term=azo3642
azo3643	azo3643		azo3643	4002629	4003768	-	probable dNTP triphosphohydrolase	Probable dNTP triphosphohydrolase. Homology to an orf of Thermus thermophilus of 46%25 (gi|37572416|dbj|BAC98488.1|(NCBI ENTREZ)). Pfam: HDc. The HD domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism%2C signal transduction and possibly other functions in bacteria%2C archaea and eukaryotes. The fact that all the highly conserved redisues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins. This domain is also found in eukaryotic 3'%2C5'-cGMP phosphodiesterase (EC 3.1.4.17) (PDE)%2C which is located in photoreceptor outer segments and it is light activated%2C playing a pivotal role in signal transduction. This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit). Interpro: IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase. DeoxyGTP triphosphohydrolase (dgt) releases inorganic triphosphate%2Can unusual reaction product%2C from GTP. Its activity has been called limited to the Enterobacteriaceae%2C although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species%2C the homologous gene is found in an apparent operon with dnaG%2C the DNA primase gene. The enzyme from Escherichia coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown. No signal peptide. No TMHs.%3B~Specificity unclear	gene	gene3703	http://www.ncbi.nlm.nih.gov/gene/?term=azo3643
azo3644	azo3644	aroB	aroB	4003759	4004841	-	3-dehydroquinate synthase	Probable 3-dehydroquinate synthase %2C 61%25 Identity to SwissProt%3BQ7NZU4%2CQ82TB9. TrEMBL%3BQ60BY2 Has Pfam01761%2CDHQ_synthase%2C 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.	gene	gene3704	http://www.ncbi.nlm.nih.gov/gene/?term=azo3644
azo3645	azo3645	aroK	aroK	4004829	4005365	-	probable shikimate kinase	Probable shikimate kinase. Homology to aroK of E. coli of 44%25 (sprot|AROK_ECOLI) Catalyzes the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway). The enzyme catalyzes the following reaction: ATP + shikimate %3D ADP + shikimate-3-phosphate InterPro: Shikimate kinase(IPR000623) Pfam: Shikimate kinase no signal peptide no TMHs DTMP_kinase: thymidylate kinase%3B~High confidence in function and specificity	gene	gene3705	http://www.ncbi.nlm.nih.gov/gene/?term=azo3645
azo3646	azo3646	pilQ	pilQ	4005442	4007565	-	probable type 4 fimbrial biogenesis protein	Type 4 fimbrial biogenesis protein PilQ%2C similarity to sprot|PILQ_PSEAE (41%25) and trembl|Q8XV60 (45%25). PilQ is essential for the biogenesis of type IV pili. Its precise function is unknown%2C but it has been suggested that it may act as a pilus channel in the final stages of pilus assembly. InterPro (PF00263): General (type II) secretion pathway (GSP) D protein SignalP reporting signal peptide.%3B~Specificity unclear	gene	gene3706	http://www.ncbi.nlm.nih.gov/gene/?term=azo3646
azo3647	azo3647	pilP	pilP	4007562	4008077	-	putative type 4 fimbrial biogenesis protein	Type 4 fimbrial biogenesis protein%2C PilP. PilP is essential for the biogenesis of type IV pili. Similar to trembl|Q7NZU1(37%25). SignalP reporting Signal Peptide.%3B~Family membership	gene	gene3707	http://www.ncbi.nlm.nih.gov/gene/?term=azo3647
azo3648	azo3648	pilO	pilO	4008074	4008748	-	probable type 4 fimbrial biogenesis protein	Type 4 fimbrial biogenesis protein PilO%2C similarity to pir|S77728 (40%25). PilO proteins are involved in the assembly of pilin. TMHMM reporting one TMH.%3B~Specificity unclear	gene	gene3708	http://www.ncbi.nlm.nih.gov/gene/?term=azo3648
azo3649	azo3649	pilN	pilN	4008745	4009344	-	probable type 4 fimbrial biogenesis protein	Type 4 fimbrial biogenesis protein PilN%2C similarity to trembl|Q82SK2(51%25)and to pir|S77727(42%25). In P. aeruginosa PilN was found to be required for fimbrial biogenesis by complementation studies using twitching motility and sensitivity to fimbrial-specific phage as indicators of the presence of functional fimbriae. SignalP reporting signal peptide.%3B~Specificity unclear	gene	gene3709	http://www.ncbi.nlm.nih.gov/gene/?term=azo3649
azo3650	azo3650	pilM	pilM	4009341	4010417	-	probable type 4 fimbrial biogenesis protein	Type 4 fimbrial biogenesis protein PilM%2C similarity to trembl|Q82SK1 (56%25)and to pir|S77726 (47%25). Four genes%2CpilM-P%2C encode the necessary proteins and pilM is required for the assembly of the type IV fimbriae in Pseudomonas aeruginosa.%3B~Specificity unclear	gene	gene3710	http://www.ncbi.nlm.nih.gov/gene/?term=azo3650
azo3651	azo3651	mrcA	mrcA	4010609	4012981	+	probable penicillin-binding protein 1A	Probable penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes: Penicillin- insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase)%3B Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]. Homology to mrcA of N. meningitides of 47%25 (sprot|PBPA_NEIMA(SRS)) Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity). InterPro: Penicillin binding protein transpeptidase domain (IPR001460)%3B Glycosyltransferase family 51 (IPR001264) Pfam: Transglycosylase%3B Penicillin binding protein transpeptidase singal peptide no TMHs HTH predicted%3B~High confidence in function and specificity	gene	gene3711	http://www.ncbi.nlm.nih.gov/gene/?term=azo3651
azo3652	azo3652	cyaY	cyaY	4012971	4013348	-	putative CyaY protein	CyaY protein that belongs to the frataxin family.Probably involved in iron metabolism. 33%25 similarity to CyaY protein from E.coli. SWISSPROT:CYAY_YERPE:P46356 InterPro:IPR002908%3B Frataxin_like. Pfam:PF01491%3B Frataxin_Cyay%3B 1.%3B~High confidence in function and specificity	gene	gene3712	http://www.ncbi.nlm.nih.gov/gene/?term=azo3652
azo3653	azo3653		azo3653	4013347	4013517	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ypo3846 of Y. pestis of 42%25 (trembl|Q8ZAF7). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3713	http://www.ncbi.nlm.nih.gov/gene/?term=azo3653
azo3654	azo3654	lysA2	lysA2	4013514	4014788	+	LysA2 protein	Diaminopimelate decarboxylase%2C LysA. Similar to sprot|DCDA_PSEAE (64%25). Pyridoxal-dependent decarboxylases that act on ornithine-%2C lysine-%2C arginine- and related substrates can be classified into different families on the basis of sequence similarity. Prokaryotic diaminopimelic acid decarboxylase (DAPDC) catalyses the conversion of diaminopimelic acid into lysine%2C the final step of lysine biosynthesis. InterPro(PR01181): Diaminopimelate decarboxylase InterPro(PF00278): Orn/DAP/Arg decarboxylases family 2%3B~High confidence in function and specificity	gene	gene3714	http://www.ncbi.nlm.nih.gov/gene/?term=azo3654
azo3655	azo3655		azo3655	4014811	4015158	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA2272 of Azoarcus sp. EbN1 of 62%25 (gnl|keqq|eba:ebA2272(KEGG)). No domains predicted. No TMHs. No signal peptide.	gene	gene3715	http://www.ncbi.nlm.nih.gov/gene/?term=azo3655
azo3656	azo3656	dacB	dacB	4015219	4016685	+	Serine-type D-Ala-D-Ala carboxypeptidase	Penicillin-binding protein 4 precursor (PBP-4) [Includes: D-alanyl-D- alanine carboxypeptidase (EC 3.4.16.4) (DD-peptidase) (DD- carboxypeptidase)%3B D-alanyl-D-alanine-endopeptidase (DD-endopeptidase)]. Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction. PBP4: D-alanyl-D-alanine carboxypeptid%3B~High confidence in function and specificity	gene	gene3716	http://www.ncbi.nlm.nih.gov/gene/?term=azo3656
azo3657	azo3657		azo3657	4016702	4017118	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to bb4211 of B. bronchiseptica of 37%25 (trembl|Q7WFQ9(SRS)). No domains predicted. No signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene3717	http://www.ncbi.nlm.nih.gov/gene/?term=azo3657
azo3658	azo3658	yigC	yigC	4017168	4018658	-	3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) (Polyprenyl p-hydroxybenzoate decarboxylase). CATALYZES THE DECARBOXYLATION OF 3-OCTAPRENYL-4-HYDROXY BENZOATE TO 2-OCTAPRENYLPHENOL (BY SIMILARITY).%3B~High confidence in function and specificity	gene	gene3718	http://www.ncbi.nlm.nih.gov/gene/?term=azo3658
azo3659	azo3659	pyrF	pyrF	4018668	4019480	-	Official Name Orotidine-5'-phosphate decarboxylase	Orotidine-5'-phosphate decarboxylase (Orotidylic decarboxylase) (OMP decarboxylase) (OMPdcase) (Uridine 5'-monophosphate synthase) (UMP synthase)%3B~High confidence in function and specificity	gene	gene3719	http://www.ncbi.nlm.nih.gov/gene/?term=azo3659
azo3660	azo3660	npd2	npd2	4019543	4020316	-	NAD-dependent deacetylase	NAD-dependent deacetylase 2 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 2). Modulates the activities of several enzymes which are inactive in their acetylated form. Similar to SWISSPROT: sprot|NPD2_PSEAE (50%25 Pseudomonas aeruginosa%2C Npd2) / sprot|NPD1_ARCFU (33%25 Archaeoglobus fulgidus%2C NpdA) InterPro: IPR003000 SIR2. Pfam: PF02146 Sir2 family.%3B~High confidence in function and specificity	gene	gene3720	http://www.ncbi.nlm.nih.gov/gene/?term=azo3660
azo3661	azo3661		azo3661	4020405	4022477	-	conserved hypothetical molybdopterin oxidoreductase	Conserved hypothetical molybdopterin oxidoreductase. Homology to rsc2859 of R. solanacearum of 60%25 (trembl|Q8XVH2). Tigrfam: bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxidoreductases. Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain. Helixturnhelix motif. no signal sequenz. no TMHs%3B~Conserved hypothetical protein	gene	gene3721	http://www.ncbi.nlm.nih.gov/gene/?term=azo3661
azo3662	azo3662		azo3662	4022532	4023209	-	conserved hypothetical secreted protein	Conserved hypothetical secreted proteinn. Homology to ebA3326 Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA3326(KEGG)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3722	http://www.ncbi.nlm.nih.gov/gene/?term=azo3662
azo3663	azo3663	pyrE	pyrE	4023187	4023855	-	Official Name Orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase (Orotidylic acid phosphorylase) (Orotidine-5'-phosphate pyrophosphorylase) (Orotidine-5'-phosphate diphosphorylase) (OPRT) InterPro: Orotate phosphoribosyltransferase%3B~High confidence in function and specificity	gene	gene3723	http://www.ncbi.nlm.nih.gov/gene/?term=azo3663
azo3664	azo3664	xthA2	xthA2	4023919	4024701	+	Exodeoxyribonuclease III	Exodeoxyribonuclease (EC 3.1.11.2). InterPro: AP endonucleases family 1%3B~High confidence in function and specificity	gene	gene3724	http://www.ncbi.nlm.nih.gov/gene/?term=azo3664
azo3665	azo3665		azo3665	4024848	4027106	+	conserved hypothetical signaling protein	Conserved hypothetical signaling protein. Homology to IL2267 of Idiomarina loihiensis of 35%25 (gnl|keqq|ilo:IL2267(KEGG)). InterPro: IPR001633 EAL. IPR000160 GGDEF. Pfam: PF00563 EAL. PF00990 GGDEF. SMART: SM00267 DUF1. SM00052 DUF2. TIGRFAM:TIGR00254 GGDEF. Signaling protein ykoW. Probable signaling protein whose physiological role is not yet known. no signal peptide. No TMHs%3B~Conserved hypothetical protein	gene	gene3725	http://www.ncbi.nlm.nih.gov/gene/?term=azo3665
azo3666	azo3666		azo3666	4027103	4028941	+	putative sensor histidine kinase	Putative sensor histidine kinase%2C low similarity to SWISSPROT: sprot|KINB_PSEAE (13%25 Pseudomonas aeruginosa%2Calginate biosynthesis sensor protein KinB) / TREMBL: trembl|Q50853 (13%25 Myxococcus xanthus%2C AsgA) InterPro: IPR004358 Bact_sens_pr_C. IPR003661 His_kinA_N. IPR005467 His_kinase. Pfam: PF02518 HATPase_c. PF00512 HisKA. SMART: SM00387 HATPase_c. SM00388 HisKA. TMHMM reporting 1 transmembrane helices.%3B~Family membership	gene	gene3726	http://www.ncbi.nlm.nih.gov/gene/?term=azo3666
azo3667	azo3667		azo3667	4029038	4029346	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RS05100 of Ralstonia solanacearum of 50%25 (trembl|Q8Y1D7(SRS)). Has PF05957%2C Bacterial protein of unknown function (DUF883)%3BIPR010279%3B This family consists of several hypothetical bacterial proteins of unknown function. no signal peptide. 1 TMH%3B~Conserved hypothetical protein	gene	gene3727	http://www.ncbi.nlm.nih.gov/gene/?term=azo3667
azo3668	azo3668		azo3668	4029352	4029735	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rs05101 R. solanacearum of 36%25 (trembl|Q8Y1D8(SRS)). No domains predicted. No signal peptide. 2 TMHs%3B~Conserved hypothetical protein	gene	gene3728	http://www.ncbi.nlm.nih.gov/gene/?term=azo3668
azo3669	azo3669		azo3669	4029732	4030103	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebD74 of Azoarcus sp. EbN1 of 36%25 (gnl|keqq|eba:ebD74(KEGG)). No domains predicted. No signal peptide. No TMHs.	gene	gene3729	http://www.ncbi.nlm.nih.gov/gene/?term=azo3669
azo3670	azo3670	hpt	hpt	4030246	4030803	+	hypoxanthine phosphoribosyltransferase	Hypoxanthine phosphoribosyltransferase (Hypoxanthine-guanine phosphoribosyltransferase. (HGPRTase) (IMP pyrophosphorylase) (IMP diphosphorylase) (Transphosphoribosidase) (Guanine phosphoribosyltransferase)%3B~Function unclear	gene	gene3730	http://www.ncbi.nlm.nih.gov/gene/?term=azo3670
azo3671	azo3671		azo3671	4030814	4031149	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to BPP4351 of B.parapertussis of 38%25 (trembl:Q7W2Q3). No domains predicted. No TMHs. No signal peptide.	gene	gene3731	http://www.ncbi.nlm.nih.gov/gene/?term=azo3671
azo3672	azo3672	qseB2	qseB2	4031270	4031950	+	DNA-binding response regulator	DNA-binding response regulator%2C%3B~High confidence in function and specificity	gene	gene3732	http://www.ncbi.nlm.nih.gov/gene/?term=azo3672
azo3673	azo3673	qseC2	qseC2	4032106	4033452	+	two-component system histidine kinase	Two-component system histidine kinase%2C%3B~High confidence in function and specificity	gene	gene3733	http://www.ncbi.nlm.nih.gov/gene/?term=azo3673
azo3674	azo3674	mucD4	mucD4	4033530	4034963	+	probable serine protease MucD	Probable serine protease MucD. Homology to mucD of P. aeruginosa of 51%25 (trembl|Q57155) Pfam: Trypsin%3B PDZ domain (Aslo konwn as DHR or GLGF) no TMH signal peptide%3B~High confidence in function and specificity	gene	gene3734	http://www.ncbi.nlm.nih.gov/gene/?term=azo3674
azo3675	azo3675		azo3675	4035014	4035511	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. Homology to bpp3105 of B. parapertussis of 20%25 (trembl|Q7W622). no domains predicted. no signal peptide. no TMHs	gene	gene3735	http://www.ncbi.nlm.nih.gov/gene/?term=azo3675
azo3676	azo3676	nagL2	nagL2	4035537	4036184	-	probable maleylpyruvate isomerase	Probable maleylpyruvate isomerase. Homology to nagL of Ralstonia spU of 50%25 (trembl|O86043) NagL is a reduced glutathione-dependent maleylpyruvate isomerase catalyzing the isomerization of maleypyruvate to fumarylpyruvate. InterPro: Glutathione S-transferase N terminus (IPR004045)%2C Glutathione S-transferase C terminus (IPR004046) Pfam: Glutathione S-transferase%2C N-terminal domaine no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3736	http://www.ncbi.nlm.nih.gov/gene/?term=azo3676
azo3677	azo3677	dctP6	dctP6	4036298	4037326	-	putative c4-dicarboxylate-binding periplasmic protein	TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 23%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present.%3B~Specificity unclear	gene	gene3737	http://www.ncbi.nlm.nih.gov/gene/?term=azo3677
azo3678	azo3678		azo3678	4037367	4038380	-	fumarylacetoacetate hydrolase family protein	This family consists of fumarylacetoacetate (FAA) hydrolase%2C or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. Similar to TREMBL:Q9KSB3 (67%25 identity)%3B TREMBL:Q92LT4 (67%25 identity)%3B TREMBL:Q8EGD4 (61%25 identity). Pfam (PF01557): Fumarylacetoacetate (FAA) hydrolase family.%3B~Family membership	gene	gene3738	http://www.ncbi.nlm.nih.gov/gene/?term=azo3678
azo3679	azo3679		azo3679	4038439	4038972	-	glyoxalase-family protein	Glyoxalase I (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. Similar to trembl|Q89SS0 (63%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3B~Family membership	gene	gene3739	http://www.ncbi.nlm.nih.gov/gene/?term=azo3679
azo3680	azo3680		azo3680	4038995	4039219	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS01748 of R.solanacearum of 59%25 (trembl:Q8XRY0). No domains predicted. No TMHs. No signal peptide.	gene	gene3740	http://www.ncbi.nlm.nih.gov/gene/?term=azo3680
azo3681	azo3681	mhpA	mhpA	4039232	4040899	-	3-(3-hydroxy-phenyl)propionate hydroxylase%2Cputative	Putative oxygenase. 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)%2C InterPro: Aromatic-ring hydroxylase (flavoprotein monooxygenase)%3B~Specificity unclear	gene	gene3741	http://www.ncbi.nlm.nih.gov/gene/?term=azo3681
azo3682	azo3682		azo3682	4040974	4041939	-	putative cyclase	Beta-lactamase II precursor (EC 3.5.2.6) (Penicillinase) (Cephalosporinase). Can hydrolyze carbapenem compounds. InterPro:IPR001279-Metallo-beta-lactamase superfamily TREMBL:Q8XRX8-72%25 identity TREMBL:Q7VUG6- 62%25 Pfam:PF00753-LactamaseB%2C Ribosomal proteinS6e%2CThiC family TIGRFAM:TIGR00010- TatD/hisF family TMHMM predicted transmembrane helix. mobB: molybdopterin-guanine dinucleotide%3B~High confidence in function and specificity	gene	gene3742	http://www.ncbi.nlm.nih.gov/gene/?term=azo3682
azo3683	azo3683	gylR	gylR	4042117	4042941	+	putative transcriptional regulator iclR-family	Putative transcriptional regulator iclR-family%2C%3B~Family membership	gene	gene3743	http://www.ncbi.nlm.nih.gov/gene/?term=azo3683
azo3684	azo3684		azo3684	4043053	4043889	+	putative periplasmic binding protein	Putative periplasmic binding protein-related protein.This family includes several of which are involved in iron transport. 24%25%3B~Function unclear	gene	gene3744	http://www.ncbi.nlm.nih.gov/gene/?term=azo3684
azo3685	azo3685		azo3685	4043889	4047515	+	putative hybrid sensor and regulator protein	Putative hybrid sensor and regulator protein%2C MmoS) InterPro: IPR003594%3B ATPbind_ATPase. IPR005467%3B His_kinase. IPR003661%3B His_kinA_N. IPR008207%3B Hpt. IPR001610%3B PAC. IPR000700%3B PAS-assoc_C. IPR000014%3B PAS_domain. IPR001789%3B Response_reg. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. PF00785%3B PAC. PF00989%3B PAS. PF00072%3B Response_reg. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00073%3B HPT. SM00086%3B PAC. SM00091%3B PAS. SM00448%3B REC. TIGRFAM: TIGR00229%3B sensory_box. TMHMM reporting 2 transmembrane helices.%3B~Family membership	gene	gene3745	http://www.ncbi.nlm.nih.gov/gene/?term=azo3685
azo3686	azo3686	rpfG	rpfG	4047603	4048715	+	probable response regulator	Probable response regulator%2C HD. IPR003607%3B Met_phsphohydro. IPR001789%3B Response_reg. IPR008328%3B Res_reg_HDGYP. Pfam: PF01966%3B HD. PF00072%3B Response_reg. SMART: SM00471%3B HDc. SM00448%3B REC.%3B~Specificity unclear	gene	gene3746	http://www.ncbi.nlm.nih.gov/gene/?term=azo3686
azo3687	azo3687	cc43	cc43	4048737	4049372	-	putative cytochrome c4	Putative cytochrome c4. Homology to cc4 of A. vinelandii of 29%25 (sprot|CYC4_AZOVI). Diheme%2C high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems. Pfam: cytochrome C signal peptide no TMHs	gene	gene3747	http://www.ncbi.nlm.nih.gov/gene/?term=azo3687
azo3688	azo3688		azo3688	4049428	4049787	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to pspto0091 of P. syringae of 35%25 (trembl|Q88BC6). Pfam: DUF861. This family consists of several proteins which seem to be specific to plants and bacteria. The function of this family is unknown. no signal peptide. no TMHs	gene	gene3748	http://www.ncbi.nlm.nih.gov/gene/?term=azo3688
azo3689	azo3689	murB	murB	4049799	4050842	-	UDP-N-acetylmuramate dehydrogenase	UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) (UDP-N- acetylmuramate dehydrogenase). Cell wall formation (By similarity). InterPro: UDP-N-acetylenolpyruvoylglucosamine reductase murB: UDP-N-acetylenolpyruvoylglucosamine%3B~High confidence in function and specificity	gene	gene3749	http://www.ncbi.nlm.nih.gov/gene/?term=azo3689
azo3690	azo3690		azo3690	4050942	4051349	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to atu1643 of A. tymefaciens of 39%25 (trembl|Q8UEW1(SRS)). Pfam: Bacterial transmembrane pair family. This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins. signal peptide. 3 TMHs%3B~Conserved hypothetical protein	gene	gene3750	http://www.ncbi.nlm.nih.gov/gene/?term=azo3690
azo3691	azo3691		azo3691	4051624	4053654	-	putative methyl-accepting chemotaxis transducer	Putative methyl-accepting chemotaxis protein%2CChmtaxis_transd. IPR003660%3B HAMP. Pfam: PF00672%3B HAMP. PF00015%3B MCPsignal. SMART: SM00304%3B HAMP. SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Family membership	gene	gene3751	http://www.ncbi.nlm.nih.gov/gene/?term=azo3691
azo3692	azo3692		azo3692	4053784	4054350	+	putative N-acetyltransferase	Putative N-acetyltransferase%2C51%25 Identity to TrEMBl%3BQ7WQB1%2C54%25 Identity to TrEMBL%3BQ63LT2%2CQ7WCA7. Has PF00583%2C Acetyltransferase (GNAT) family%3BIPR000182%2CGCN5acetyl_trans%3B This family contains proteins with N-acetyltransferase functions. Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs)%2C which catalyze the transfer of an acetyl group from acetyl-CoA to the lysine E -amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin%2C histones tend to be hyperacetylated%2C whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs)%3B the MYST (for `MOZ%2C Ybf2/Sas3%2CSas2 and Tip60)-related HATs%3B p300/CBP HATs%3B the general transcription factor HATs%2C which include the TFIID subunit TAF250%3B and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1%2C the elongator complex subunit Elp3%2C the mediator-complex subunit Nut1%2C and Hpa2	gene	gene3752	http://www.ncbi.nlm.nih.gov/gene/?term=azo3692
azo3693	azo3693		azo3693	4054347	4055573	+	conserved hypothetical membrane protein	Similar to hypothetical integral membrane transport protein yidY (MFS family). Signal peptide containing non secretory protein. With 12 putative transmembrane helices. General transport of carbohydrates %2C amino acids%2C and other small molecules.%3B~Conserved hypothetical protein	gene	gene3753	http://www.ncbi.nlm.nih.gov/gene/?term=azo3693
azo3694	azo3694		azo3694	4055667	4055852	+	hypothetical secreted protein	Hypothetical secreted protein. No good homology to the data bank. Has Signal Peptide.	gene	gene3754	http://www.ncbi.nlm.nih.gov/gene/?term=azo3694
azo3695	azo3695	trpS	trpS	4056007	4057344	-	TrpS protein	Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS).%3B~High confidence in function and specificity	gene	gene3755	http://www.ncbi.nlm.nih.gov/gene/?term=azo3695
azo3696	azo3696		azo3696	4057400	4057786	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to bb3068 of B. bronchiseptica of 31%25 (trembl|Q7WHY8(SRS)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3756	http://www.ncbi.nlm.nih.gov/gene/?term=azo3696
azo3697	azo3697		azo3697	4057811	4058158	-	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Has signal peptide.	gene	gene3757	http://www.ncbi.nlm.nih.gov/gene/?term=azo3697
azo3698	azo3698		azo3698	4058405	4058953	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03001371 of Dechloromonas aromatica of 43%25 (gi|53730748|ref|ZP_00348943.1|(NBCI ENTREZ)). No doamins predicted. No signal peptide. No TMHs.	gene	gene3758	http://www.ncbi.nlm.nih.gov/gene/?term=azo3698
azo3699	azo3699		azo3699	4058961	4060172	+	conserved hypothetical protein	Conserved hypothetical protein%2C 38%25 identity(51%25 similarity) to TrEMBL%3BQ8KAU5. TrEMBL%3B Q6MRD6(59%25 identity). Has PF07075%2C Protein of unknown function (DUF1343)%3BIPR008302%2C UCP016719%3B This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.There are currently no experimental data for members of this group or their homologues%2C nor do they exhibit features indicative of any function.%3B~Function unclear	gene	gene3759	http://www.ncbi.nlm.nih.gov/gene/?term=azo3699
azo3700	azo3700	trxC2	trxC2	4060198	4060578	-	probable thioredoxin-disulfide reductase	Probable thioredoxin-disulfide reductase. Homology to trxC3 (THI3_CORNE) of C. nephridii of 43%25. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. Pfam: Thioredoxin no signal peptide no TMHs%3B~Family membership	gene	gene3760	http://www.ncbi.nlm.nih.gov/gene/?term=azo3700
azo3701	azo3701		azo3701	4060726	4061031	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to bll7423 of B. japonicum of 53%25 (trembl|Q89DL6). Pfam: Antibiotic biosynthesis monooxygenase. no TMHs. No signal peptide.	gene	gene3761	http://www.ncbi.nlm.nih.gov/gene/?term=azo3701
azo3702	azo3702		azo3702	4061111	4061821	+	conserved hypothetical protein	conserved hypothetical protein. Homology to Avin02001428 of Azotobacter vinelandii of 54%25 (gi|53612536|ref|ZP_00091632.2|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs	gene	gene3762	http://www.ncbi.nlm.nih.gov/gene/?term=azo3702
azo3703	azo3703		azo3703	4061834	4062295	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to PM2013 of P. multocida of 44%25 (tremble:Q9CJJ4). probable signal peptide. probable 2 TMHS%3B~Conserved hypothetical protein	gene	gene3763	http://www.ncbi.nlm.nih.gov/gene/?term=azo3703
azo3704	azo3704		azo3704	4062391	4063305	+	hypothetical membrane protein	Hypothetical membrane protein. No homology of the entire protein to the data bank. Has PF05875%3BAlkaline phytoceramidase (aPHC):This family consists of several eukaryotic Alkaline phytoceramidase (aPHC) sequences. Ceramidases are enzymes involved in regulating cellular levels of ceramides%2C sphingoid bases%2C and their phosphates. Alkaline phytoceramidase (aPHC) is responsible for the hydrolysis of phytoceramide. No signal peptide. 6 TMHs.	gene	gene3764	http://www.ncbi.nlm.nih.gov/gene/?term=azo3704
azo3705	azo3705	gapR	gapR	4063257	4064321	-	putative AraC family transcriptional regulator	Putative AraC family transcriptional regulator%2C%3B~High confidence in function and specificity	gene	gene3765	http://www.ncbi.nlm.nih.gov/gene/?term=azo3705
azo3706	azo3706		azo3706	4064470	4065540	+	conserved hypothetical protein	Similar to TREMBL:Q89RW7 (50%25 identity%2C64%25 similarity)%3B TREMBL:Q88IS2 (49%25 identity). InterPro (IPR000051)%3B SAM (and some other nucleotide) binding motif.	gene	gene3766	http://www.ncbi.nlm.nih.gov/gene/?term=azo3706
azo3707	azo3707		azo3707	4065556	4065882	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to sty1393 of S. typhi of 34%25 (trembl|Q8Z792). Pfam: Antibiotic biosynthesis monooxygenase. no signal peptide. no TMHs	gene	gene3767	http://www.ncbi.nlm.nih.gov/gene/?term=azo3707
azo3708	azo3708		azo3708	4065983	4066393	-	dioxygenase-family protein	Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates. Cleavage of aromatic rings is one of the most important function of dioxygenases. Similar to trembl|Q7WJ14 (50%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3B~Family membership	gene	gene3768	http://www.ncbi.nlm.nih.gov/gene/?term=azo3708
azo3709	azo3709		azo3709	4066490	4066942	-	hypothetical protein	Family membership%3B~ORF8	gene	gene3769	http://www.ncbi.nlm.nih.gov/gene/?term=azo3709
azo3710	azo3710		azo3710	4067068	4067532	-	conserved hypothetical acetyltransferase	Conserved hypothetical transferase. Homology to the IAA acetyltransferase of A. brasilense of 37%25 (sprot|IAAT_AZOBR). The IAA acetyltransferase participates in the tryptophan-dependent indole-3-acetic acid production%2C which is a phytohormone released by A.brasilense. Interpro: GCN5-related N-acetyltransferase (IPR000182). Pfam: Acetyltransferase (GNAT) family. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3770	http://www.ncbi.nlm.nih.gov/gene/?term=azo3710
azo3711	azo3711		azo3711	4067656	4068402	-	conserved hypothetical protein	Similar to SWISSPROT:P39367 (68%25 identity)%2CTREMBL:Q8Z1C8 (66%25 identity).	gene	gene3771	http://www.ncbi.nlm.nih.gov/gene/?term=azo3711
azo3712	azo3712		azo3712	4068452	4068979	-	conserved hypothetical protein	conserved hypothetical protein. Homology to Raeut03002407 of Ralstonia eutropha of 48%25 (gi|46132577|ref|ZP_00171131.2|(NBCI ENTREZ)). Pfam: NUDIX domain. No signal peptide. No TMHs.	gene	gene3772	http://www.ncbi.nlm.nih.gov/gene/?term=azo3712
azo3713	azo3713	bleO	bleO	4069022	4069390	-	putative bleomycin resistance protein	Bleomycin (Blm) is a glycopeptide antibiotic produced naturally by actinomycetes. It is a strong DNA-cutting agent and thus finds use as a potent anti-cancer drug. Actinomycetes have developed a defence mechanism against this lethal compound%2C producing a protein that confers resistance to Blm through drug sequestering.Putative Bleomycin resistance protein%2C%3B~Family membership	gene	gene3773	http://www.ncbi.nlm.nih.gov/gene/?term=azo3713
azo3714	azo3714		azo3714	4069873	4070424	-	probable Acetyltransferase protein.	Probable Acetyltransferase protein. Has weak homology with hits in the database%2C TrEMBL%3BQ7N1H0(56%25 Identity). Has PF00583%2C Acetyltransferase (GNAT) family%3B IPR000182%2C GCN5acetyl_trans%3B This family contains proteins with N-acetyltransferase functions.%3BHistone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs)%2C which catalyze the transfer of an acetyl group from acetyl-CoA to the lysine E -amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin%2C histones tend to be hyperacetylated%2C whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs)%3B the MYST (for `MOZ%2C Ybf2/Sas3%2CSas2 and Tip60)-related HATs%3B p300/CBP HATs%3B the general transcription factor HATs%2C which include the TFIID subunit TAF250%3B and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1%2C the elongator complex subunit Elp3%2C the mediator-complex subunit Nut1%2C and Hpa2%3B~Family membership	gene	gene3774	http://www.ncbi.nlm.nih.gov/gene/?term=azo3714
azo3715	azo3715		azo3715	4070525	4070932	-	hypothetical membrane protein	Hypothetical membrane protein. Homology to an orf of E. coli of 29%25 (trembl|Q8VNQ4). no domains predricted. no signal peptide. 3 TMHs	gene	gene3775	http://www.ncbi.nlm.nih.gov/gene/?term=azo3715
azo3716	azo3716		azo3716	4071043	4071537	-	hypothetical protein		gene	gene3776	http://www.ncbi.nlm.nih.gov/gene/?term=azo3716
azo3717	azo3717		azo3717	4071620	4071769	-	hypothetical protein	Region start changed from 4071796 to 4071769 (-27 bases)%2C %2C Changed start from att to next atg	gene	gene3777	http://www.ncbi.nlm.nih.gov/gene/?term=azo3717
azo3718	azo3718		azo3718	4071881	4072303	-	conserved hypothetical protein		gene	gene3778	http://www.ncbi.nlm.nih.gov/gene/?term=azo3718
azo3719	azo3719		azo3719	4072411	4072626	-	hypothetical protein		gene	gene3779	http://www.ncbi.nlm.nih.gov/gene/?term=azo3719
azo3720	azo3720		azo3720	4072842	4073585	+	putative truncated transposase	Putative truncated transposase for insertion sequence element IS1328. Required for the transposition of the insertion element (Potential). Homology only to the N-terminus.%3B~Family membership	gene	gene3780	http://www.ncbi.nlm.nih.gov/gene/?term=azo3720
azo3721	azo3721		azo3721	4073607	4073966	+	putative truncated transposase	Putative truncated transposase for insertion sequence element IS1328. Required for the transposition of the insertion element (Potential). InterPro: Transposase IS116/IS110/IS902 family. Homoloy only to the C-terminus.%3B~Specificity unclear	gene	gene3781	http://www.ncbi.nlm.nih.gov/gene/?term=azo3721
azo3722	azo3722		azo3722	4076853	4077803	-	Hypothetical protein	Hypothetical protein%2C Has very weak or no homologs in the Database. Has No domains%2C repeats%2C motifs or features predicted above threshold score.	gene	gene3782	http://www.ncbi.nlm.nih.gov/gene/?term=azo3722
azo3723	azo3723		azo3723	4077851	4078369	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene3783	http://www.ncbi.nlm.nih.gov/gene/?term=azo3723
azo3724	azo3724		azo3724	4078566	4079330	+	truncated integrase/recombinase	Truncated integrase/recombinase%2C probably Integrase/recombinase protein. 58%25 Identity to SProt%3BP62591%2CP62592. Has PF00589%2C Phage integrase family%3B IPR002104%2C Phage_integrase%3B Members of this family cleave DNA substrates by a series of staggered cuts%2C during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase (P06956) are Arg-173%2C His-289%2C Arg-292 and Tyr-324. Homology only to the N-terminus	gene	gene3784	http://www.ncbi.nlm.nih.gov/gene/?term=azo3724
azo3725	azo3725		azo3725	4079327	4079527	+	putative truncated integrase	Putative truncated integrase/recombinase (E2 protein). PUTATIVE INTEGRASE BELIEVED TO BE INVOLVED IN INSERTIONS OF ANTIBIOTIC RESISTANCE GENES INTO PLASMIDS AND TRANSPOSONS. Homology only to the C-terminus.%3B~Family membership	gene	gene3785	http://www.ncbi.nlm.nih.gov/gene/?term=azo3725
azo3726	azo3726	metH	metH	4079534	4083235	-	probable methionine synthase	Probable methionine synthase. Homology to metH of E. coli of 62%25 (SWISSPROT:METH_SALTY) Catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. Terminal step in the de novo biosynthesis of methionine. InterPro: Homocysteine S-methyltransferase (IPR003726)%3B Cobalamin-dependent methionine sythase%2C B12 binding domain (IPR003759)%3B B12 binding domain (IPR003158)%3B vitamin B12 dependent methionine sythase activation domain (IPR004223) Pfam: Homosxteine S-methyltransferase%3B Vitamin B12 dependent methionine synthase activation domain%2C B12 binding domain no signal peptide no TMHs 1 HTH%3B~High confidence in function and specificity	gene	gene3786	http://www.ncbi.nlm.nih.gov/gene/?term=azo3726
azo3727	azo3727		azo3727	4083455	4084066	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to ebA3180 of Azoarcus sp. EbN1 of 57%25 (gi|56477224|ref|YP_158813.1|(NBCI ENTREZ)). No domains predicted Signal Peptide present. No TMH reported present.%3B~Conserved hypothetical protein	gene	gene3787	http://www.ncbi.nlm.nih.gov/gene/?term=azo3727
azo3728	azo3728		azo3728	4084068	4084556	-	probable lipoprotein	Probable lipoprotein%2C 58%25 similarity to TrEMBL:Q8XWT8 PROBABLE LIPOPROTEIN [RS01163] [Ralstonia solanacearum (Pseudomonas solanacearum)]. Has PF04355:IPR007450:SmpA / OmlA family%3BLipoprotein Bacterial outer membrane lipoprotein%2C possibly involved in in maintaining the structural integrity of the cell envelope [1]. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (OmpA). Signal peptide present. NO TMH reported present.%3B~Family membership	gene	gene3788	http://www.ncbi.nlm.nih.gov/gene/?term=azo3728
azo3729	azo3729	livK3	livK3	4084668	4085792	+	probable leucine-specific binding protein	In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to sprot|LIVK_ECOLI (31%25) and to trembl|Q7NV64 (54%25). Pfam (PF01094): Receptor family ligand binding region Pfam (PF00861): Ribosomal L18p/L5e family SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene3789	http://www.ncbi.nlm.nih.gov/gene/?term=azo3729
azo3730	azo3730	livK4	livK4	4086174	4087289	+	probable leucine-specific binding protein	In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to trembl|Q7NV64 (58%25) and to sprot|LIVK_ECOLI (33%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene3790	http://www.ncbi.nlm.nih.gov/gene/?term=azo3730
azo3731	azo3731	livH	livH	4087402	4088334	+	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar trembl|Q7NXX3 (60%25)%2C to sprot|BRAD_PSEAE (47%25) and to sprot|LIVH_ECOLI (44%25). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting seven Tmhelix. gntP: gluconate transporter%3B~Specificity unclear	gene	gene3791	http://www.ncbi.nlm.nih.gov/gene/?term=azo3731
azo3732	azo3732	livM5	livM5	4088347	4089444	+	putative branched-chain amino acid transport permease	Putative branched-chain amino acid transport permease. Homology to livM of S. typhimurium of 44%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. no signal peptide probable 8 TMHs%3B~Specificity unclear	gene	gene3792	http://www.ncbi.nlm.nih.gov/gene/?term=azo3732
azo3733	azo3733	livG2	livG2	4089441	4090214	+	ABC transporter ATP-binding protein	Probable high-affinity branched-chain amino acid transport ATP-binding protein BraF. ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2Cresponsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. BraF is a COMPONENT OF THE HIGH AFFINITY LEUCINE ISOLEUCINE VALINE TRANSPORT SYSTEM (LIV-I) WHICH IS OPERATIVE WITHOUT NA(+) AND IS SPECIFIC FOR ALANINE AND THREONINE IN ADDITION TO BRANCHED-CHAIN AMINO ACIDS. Similar to trembl|Q7NXX1 (67%25)%2C to sprot|BRAF_PSEAE (45%25) and to sprot|LIVG_ECOLI (44%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear	gene	gene3793	http://www.ncbi.nlm.nih.gov/gene/?term=azo3733
azo3734	azo3734		azo3734	4090204	4090938	+	ABC transporter ATP-binding protein	ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7NXX0 (58%25) and to trembl|Q7VVD3 (59%25). Smart: AAA ATPases%3B~Specificity unclear	gene	gene3794	http://www.ncbi.nlm.nih.gov/gene/?term=azo3734
azo3735	azo3735	bcr2	bcr2	4090917	4092113	-	putative bicyclomycin resistance protein	Bicyclomycin resistance protein homolog. Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance. Probable membrane translocase (By similarity). InterPro: General carbohydrate%2C amino acid %2C and divalent cation transport. Occurence of signal peptide and 12 transmembrane helices. Presence of DUF domains and Cation transport ATPase C-terminus domains. 35%25 identity and 47%25 similarity to bcr from X.axonopodis. Probably it is a copy of bcr1 in Azoarcus BH72 genome.%3B~Conserved hypothetical protein	gene	gene3795	http://www.ncbi.nlm.nih.gov/gene/?term=azo3735
azo3736	azo3736		azo3736	4092166	4093665	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to rsc0338 of R. solanacearum of 64%25 (trembl|Q8Y2J7). Probable Mg(2+) chelatase family protein. InterPro: Mg chelatase-related protein (IPR004482)%3B MCM family (IPR001208)%3B AAA ATPase superfamily (IPR003593)%3B Magnesium chalatase%2C chlI subunit (IPR000523)%3B TypeI antifreeze protein (IPR000104). no signal peptide. no TMHs. TIGR00368: Mg chelatase-related protein%3B~Family membership	gene	gene3796	http://www.ncbi.nlm.nih.gov/gene/?term=azo3736
azo3737	azo3737		azo3737	4093748	4093999	-	putative secreted protein	Conserved hypothetical protein. Homology to NE0192 of N.europaea of 52%25 (trembl:Q82XR2). Has PF04380%2C Protein of unknown function (DUF526)%3BIPR007475 %3BThis is a family of uncharacterised proteins. No signal peptide. No TMHs.	gene	gene3797	http://www.ncbi.nlm.nih.gov/gene/?term=azo3737
azo3738	azo3738		azo3738	4094284	4095024	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rsc0341 of R. solanacearum of 40%25 (trembl|Q8Y2J4(SRS)). no domains predicted. signal peptide. no TMHs	gene	gene3798	http://www.ncbi.nlm.nih.gov/gene/?term=azo3738
azo3739	azo3739	glnK	glnK	4095083	4095421	+	PII-like signal transmitter protein GlnK	PII-like signal transmitter proteins are involved in the regulation of ammonium assimilation and nitrogen fixation. The PII-like proteins differed from each other in details of N-sensing. They were covalently modified by uridylylation upon nitrogen limitation. Similar to trembl|Q9EZQ3 (100%25) and to trembl|Q7NQY3 (87%25). Pfam: Nitrogen regulatory protein P-II%3B~High confidence in function and specificity	gene	gene3799	http://www.ncbi.nlm.nih.gov/gene/?term=azo3739
azo3740	azo3740	amtB	amtB	4095436	4096842	+	ammonium transporter	Ammonium transporter 1 member 1 (AtAMT1%3B1). Involved in high affinity ammonium uptake. TREMBL:Q8RP89: 100%25 identity (published) InterPro:IPR001905%3B Ammonium_transpt. IPR002229%3B RhesusRHD. IPR010256%3B RH_like_transpt. Pfam: PF00909%3B Ammonium_transp PRINTS PR00342%3B RHESUSRHD. TIGRFAMs TIGR00836%3B amt%3B PROSITE: PS01219%3B AMMONIUM_TRANSP SignalP predicted signal peptide present (0.997 probability). TMHMM predicted 12 transmembrane helices%3B~High confidence in function and specificity	gene	gene3800	http://www.ncbi.nlm.nih.gov/gene/?term=azo3740
azo3741	azo3741	ompW	ompW	4097017	4097757	+	outer membrane protein precursor	Outer membrane protein W precursor. Acts as a receptor for colicin S4.%3B~High confidence in function and specificity	gene	gene3801	http://www.ncbi.nlm.nih.gov/gene/?term=azo3741
azo3742	azo3742	purU	purU	4097840	4098715	-	Official Name Formyltetrahydrofolate deformylase	Formyltetrahydrofolate deformylase (Formyltetrahydrofolate hydrolase) (Formyl-FH(4) hydrolase) InterPro: Formyltetrahydrofolate deformylase%3B~High confidence in function and specificity	gene	gene3802	http://www.ncbi.nlm.nih.gov/gene/?term=azo3742
azo3743	azo3743	thrH	thrH	4098817	4099428	-	probable homoserine kinase	ThrH encodes a protein with an in vivo homoserine-kinase-like activity in P. aeruginosa. Homoserine kinase%2Cthe product of the thrB gene%2C catalyzes an obligatory step of threonine biosynthesis. Similar trembl|Q9I2Y2 (62%25). Pfam (PF00702): haloacid dehalogenase-like hydrolase%3B~Function unclear	gene	gene3803	http://www.ncbi.nlm.nih.gov/gene/?term=azo3743
azo3744	azo3744		azo3744	4099596	4100801	+	HD-domain containing protein	HD-domain containing protein%2C%3B~Conserved hypothetical protein	gene	gene3804	http://www.ncbi.nlm.nih.gov/gene/?term=azo3744
azo3745	azo3745	yheS	yheS	4100816	4102747	-	probable ABC transporter%2C ATP-binding protein	ABC transporter ATP-binding protein yheS. Nonsecretory protein with Signal peptide. Presence of oxidoreductase Molybdopterin binding domain%2C M-protein repeats%2C RecF protein domains%2C Cu amine oxidase N3 domain%2CK+ channels and iron-sulphur binding potentials.57%25 identity and 68%25 similarity to Dechloromonas ATPase component of ABC transporter ureG: urease accessory protein UreG%3B~Family membership	gene	gene3805	http://www.ncbi.nlm.nih.gov/gene/?term=azo3745
azo3746	azo3746		azo3746	4102815	4103438	+	hypothetical secreted protein	Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide no TMHs	gene	gene3806	http://www.ncbi.nlm.nih.gov/gene/?term=azo3746
azo3747	azo3747		azo3747	4103463	4104068	-	2-hydroxychromene-2-carboxylate isomerase family protein	Catalyzes the isomerization of 2-hydroxychromene-2-carboxylate (hcca) to trans-o-hydroxybenzylidenepyruvate (thbpa). Upper napthalene catabolic pathway which involves conversion of napthalene to salicylate. Similar to TREMBL:Q7WEK4 (57%25 identity)%3B TREMBL:Q9I714 (35%25 identity)%3B SWISSPROT:Q51948 (29%25 identity). InterPro: 2-hydroxychromene-2-carboxylate isomerase Pfam (HCCA_isomerase): 2-hydroxychromene-2-carboxylate isomerase.%3B~Specificity unclear	gene	gene3807	http://www.ncbi.nlm.nih.gov/gene/?term=azo3747
azo3748	azo3748		azo3748	4104098	4104472	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene3808	http://www.ncbi.nlm.nih.gov/gene/?term=azo3748
azo3749	azo3749	ampR	ampR	4104611	4105519	+	probable transcriptional regulator%2C LysR family	Probable HTH-type transcriptional activator ampR. Regulates the expression of the beta-lactamase gene. Represses cephalosporinase (ampC) in the presence of beta-lactams and induces it in the absence of them. Similar to SWISSPROT: sprot|AMPR_PSEAE (34%25 Pseudomonas aeruginosa%2CHTH-type transcriptional activator AmpR) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene3809	http://www.ncbi.nlm.nih.gov/gene/?term=azo3749
azo3750	azo3750		azo3750	4105616	4106194	+	isochorismatase family protein	This is a family of hydrolase enzymes. Isochorismatase%2C also known as 2%2C3 dihydro-2%2C3 dihydroxybenzoatesynthase catalyses the conversion of isochorismate%2C in the presence of water%2C to 2%2C3-dihydroxybenzoate and pyruvate. Similar to TREMBL:Q7NWS7 (61%25 identity)%3B TREMBL:Q8UIM8 (57%25 identity)%3B TREMBL:Q89UX3 (33%25 identity). InterPro (IPR000868): Isochorismatase hydrolase. Pfam (PF00857): Isochorismatase family.%3B~Family membership	gene	gene3810	http://www.ncbi.nlm.nih.gov/gene/?term=azo3750
azo3751	azo3751	darR	darR	4106205	4107167	+	probable AraC family transcriptional regulator	Probable AraC family transcriptional regulator%2C%3B~High confidence in function and specificity	gene	gene3811	http://www.ncbi.nlm.nih.gov/gene/?term=azo3751
azo3752	azo3752		azo3752	4107175	4108071	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to RSC0519 of R. solanacearum of 51%25. InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter. Pfam: Integral membrane protein DUF6. probable signal peptide. probable 9 TMHs%3B~Conserved hypothetical protein	gene	gene3812	http://www.ncbi.nlm.nih.gov/gene/?term=azo3752
azo3753	azo3753	putA	putA	4108137	4111802	-	probable bifunctional PutA protein	Probable bifunctional PutA protein [Includes: Proline dehydrogenase (EC 1.5.99.8)%3B Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)]. Homology to putA of s. meliloti of 52%25 (sprot|PUTA_RHIME) OXIDIZES PROLINE TO GLUTAMATE FOR USE AS A CARBON AND NITROGEN SOURCE AND ALSO FUNCTION AS A TRANSCRIPTIONAL REPRESSOR OF THE PUT OPERON. InterPro: Aldehyde dehydrogenase family (IPR002086)%3B Proline dehydrogenase (IPR002872) Pfam: Proline dehydrogenase%3B Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3813	http://www.ncbi.nlm.nih.gov/gene/?term=azo3753
azo3754	azo3754		azo3754	4111993	4113042	-	putative thiamine biosynthesis lipoprotein ApbE	Putative thiamine biosynthesis lipoprotein ApbE. Homology to apbE of Salmonella typhimurium of 27%25 (gi|5915687|sp|P41780|APBE_SALTY(NBCI ENTREZ)). Pfam: ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP). No TMHs. Signal peptide present.%3B~Family membership	gene	gene3814	http://www.ncbi.nlm.nih.gov/gene/?term=azo3754
azo3755	azo3755	gshB	gshB	4113039	4113995	-	glutathione synthase	Glutathione synthetase (GSH synthetase) (GSH-S) (GSHase). InterPro: Prokaryotic glutathione synthetase ATP-binding domain%3B~High confidence in function and specificity	gene	gene3815	http://www.ncbi.nlm.nih.gov/gene/?term=azo3755
azo3756	azo3756	gshA	gshA	4114008	4115303	-	GshA protein	glutamate--cysteine ligase. Glutathione metabolism.%3B~High confidence in function and specificity	gene	gene3816	http://www.ncbi.nlm.nih.gov/gene/?term=azo3756
azo3757	azo3757		azo3757	4115424	4116680	-	modification methyltransferase	Modification methylase TaqI (EC 2.1.1.72) (Adenine-specific methyltransferase TaqI) (M.TaqI). THIS METHYLASE RECOGNIZES THE DOUBLE-STRANDED SEQUENCE TCGA CAUSES SPECIFIC METHYLATION ON A-4 ON BOTH STRANDS AND PROTECTS THE DNA FROM CLEAVAGE BY THE TAQI ENDONUCLEASE. InterPro: N6 adenine-specific DNA methyltransferase N12 class%3B~Family membership	gene	gene3817	http://www.ncbi.nlm.nih.gov/gene/?term=azo3757
azo3758	azo3758	dcrH3	dcrH3	4116808	4117332	+	putative hemerythrin-like protein	DcrH:hemerythrin protein%2C is transmembrane methyl-accepting protein probably involved in bacterial chemotaxis . 32%25 Hemerythrin. Pfam:PF01814%3B Hemerythrin%3B 1.%3B~High confidence in function and specificity	gene	gene3818	http://www.ncbi.nlm.nih.gov/gene/?term=azo3758
azo3759	azo3759		azo3759	4117384	4117836	-	hemerythrin family protein	Hemerythrin family protein%2C 38%25 Identity to TrEMBl:Q74G47%2C35%25 to TrEMBL%3B Q73NY7. Has PF01814%2CHemerythrin HHE cation binding domain%3B IPR002063 Hemerythrin%3B Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor P80255 binds Cadmium so as to protect the organism from toxicity ([3]). However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96 is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands . In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger.	gene	gene3819	http://www.ncbi.nlm.nih.gov/gene/?term=azo3759
azo3760	azo3760		azo3760	4118075	4119517	+	hypothetical secreted protein	Hypothetical secreted protein. No good homology of the entire protein to the data bank. Has PF06097%2CBacterial protein of unknown function (DUF945)%3BIPR010352%3B This family consists of several hypothetical bacterial proteins of unknown function. No TMHs Siganl peptide present.	gene	gene3820	http://www.ncbi.nlm.nih.gov/gene/?term=azo3760
azo3761	azo3761		azo3761	4119639	4120235	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebD78 of Azoarcus sp. EbN1 of 40%25 (gnl|keqq|eba:ebD78(KEGG)). no domains predicted. no signal peptide. no TMHs	gene	gene3821	http://www.ncbi.nlm.nih.gov/gene/?term=azo3761
azo3762	azo3762		azo3762	4120286	4121464	+	hypothetical patatin-like protein	Hypothetical patatin-like protein. Homology to all2302 of Anabaena sp. of 20%25 (trembl|Q8YUN7). Pfam: Patatin. PATATIN MAY HAVE A DUAL ROLE AS A SOMATIC STORAGE PROTEIN AND AS AN ENZYME INVOLVED IN HOST RESISTANCE. THIS TUBER PROTEIN REPRESENTS APPROXIMATELY 40%25 OF THE TOTAL PROTEIN IN MATURE TUBERS. InterPro: Patatin (IPR002641). no signal peptide. no TMHs	gene	gene3822	http://www.ncbi.nlm.nih.gov/gene/?term=azo3762
azo3763	azo3763		azo3763	4121479	4122924	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein. no homology to the data bank no domains no signal peptide no TMHs	gene	gene3823	http://www.ncbi.nlm.nih.gov/gene/?term=azo3763
azo3764	azo3764		azo3764	4122934	4123830	-	conserved hypothetical protein	Hypothetical 21.1 kDa protein in fasciation locus (ORF6). TREMBL:Q8FV26: 50%25 identity%2C 65%25 similarity InterPro:IPR005269%3B Cons_hypoth730. Pfam:PF03641%3B Lysine_decarbox L18_bact: ribosomal protein L18 Absence of signal peptide (Signal P predicted) Absence of transmembrane helices (TMHMM predicted)%3B~Specificity unclear	gene	gene3824	http://www.ncbi.nlm.nih.gov/gene/?term=azo3764
azo3765	azo3765	ribA	ribA	4124278	4125519	+	RibA protein	Probable GTP cyclohydrolase II. TIGRFAM: ribA: GTP cyclohydrolase II%3B~Function unclear	gene	gene3825	http://www.ncbi.nlm.nih.gov/gene/?term=azo3765
azo3766	azo3766		azo3766	4125568	4126857	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to blr7238 of B.japonicum of 48%25 (trembl:Q89E49). No domains predicted. No TMHs. Signal peptide with a probability of 0.570.	gene	gene3826	http://www.ncbi.nlm.nih.gov/gene/?term=azo3766
azo3767	azo3767	upp	upp	4126875	4127507	+	uracil phosphoribosyltransferase.	Uracil phosphoribosyltransferase. (UMP pyrophosphorylase) (UMP diphosphorylase)%3B~High confidence in function and specificity	gene	gene3827	http://www.ncbi.nlm.nih.gov/gene/?term=azo3767
azo3768	azo3768		azo3768	4127515	4129629	-	putative catalase	Region start changed from 4129741 to 4129603 (-138 bases)	gene	gene3828	http://www.ncbi.nlm.nih.gov/gene/?term=azo3768
azo3769	azo3769	codA	codA	4129784	4131070	+	cytosine deaminase	Cytosine deaminase (Cytosine aminohydrolase).%3B~High confidence in function and specificity	gene	gene3829	http://www.ncbi.nlm.nih.gov/gene/?term=azo3769
azo3770	azo3770		azo3770	4131244	4131738	+	conserved hypothetical protein	conserved hypothetical protein%2C 43%25 identity (60%25 similarity) to TrEMBL%3B Q8ZML9. TrEMBL%3BQ8X937(44%25 identity to Escherichia coli) Has PF04972%2C Putative phospholipid-binding domain%3BIPR007055%2C TAD%3B This domain is found in a family of osmotic shock protection proteins (e.g. P27291). It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. Has SMART%3BSM00257%2CLysM%2C Lysin motif:IPR002482%3B This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.	gene	gene3830	http://www.ncbi.nlm.nih.gov/gene/?term=azo3770
azo3771	azo3771	fcbC2	fcbC2	4131848	4132270	+	probable thioesterase	Probable Hypothetical protein AQ_1494. TREMBL:Q7NVG8: 46%25 identity%2C 64%25 similarity. InterPro:IPR006684%3B 4HBcoA_thiostrse. IPR006683%3B Thioestr_supf. Pfam PF03061%3B 4HBT TIGRFAMs%3B TIGR00051%3B 4HBcoA_thiostrse TIGR00051: conserved hypothetical protein No signal peptide. No transmembrane helices.%3B~Function unclear	gene	gene3831	http://www.ncbi.nlm.nih.gov/gene/?term=azo3771
azo3772	azo3772		azo3772	4132342	4133625	+	conserved hypothetical protein	Hypothetical protein yhiN. TREMBL:Q7NU52: 55%25 identity%2C 66%25 similarity InterPro%3B IPR001327%3B FAD_pyr_redox. InterPro%3B IPR004792%3B HI0933_like. InterPro%3B IPR000719%3B Prot_kinase. InterPro%3B IPR001100%3B Pyr_redox InterPro: HI0933-like protein TIGR00275: conserved hypothetical pro Pfam PF03486%3B HI0933_like Non-secretory protein with no signal peptide (SignalP predicted) No transmembrane helices (TMHMM predicted)%3B~Function unclear	gene	gene3832	http://www.ncbi.nlm.nih.gov/gene/?term=azo3772
azo3773	azo3773		azo3773	4133633	4134811	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03002424 of Dechloromonas aromatica of 32%25 (gi|41723837|ref|ZP_00150727.1|(NBCI ENTREZ)). Pfam: OmpA family. singal peptide. no TMHs	gene	gene3833	http://www.ncbi.nlm.nih.gov/gene/?term=azo3773
azo3774	azo3774		azo3774	4134801	4136297	-	putative serine/threonine protein kinase	Putative serine/threonine-protein kinase (EC 2.7.11.1). Pfam: Protein kinase domain%3B~Family membership	gene	gene3834	http://www.ncbi.nlm.nih.gov/gene/?term=azo3774
azo3775	azo3775		azo3775	4136601	4137917	+	hypothetical protein	Collagenase and related proteases. Homology to ne1979 of N. europaea of 63%25 (trembl|Q82TC1). InterPro: Peptidase family U32 (IPR001539). Pfam: Peptidase family U32 no signal peptide no TMHs%3B~Family membership%3B~ORF9	gene	gene3835	http://www.ncbi.nlm.nih.gov/gene/?term=azo3775
azo3776	azo3776		azo3776	4137914	4138504	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to ebA2790 of Azoarcus sp. EbN1 of 31%25 (gnl|keqq|eba:ebA2790(KEGG)). No domains predicted. no signal peptide. 2 TMHS%3B~Conserved hypothetical protein	gene	gene3836	http://www.ncbi.nlm.nih.gov/gene/?term=azo3776
azo3777	azo3777		azo3777	4138598	4140025	+	GGDEF family protein	GGDEF family protein%2C%3B~Conserved hypothetical protein	gene	gene3837	http://www.ncbi.nlm.nih.gov/gene/?term=azo3777
azo3778	azo3778	staT	staT	4140029	4140520	+	putative streptothricin acetyltransferase	Putative streptothricin acetyltransferase. Homology to staT of S. lavenduale (sprot|STA_STRLA). Pfam: Acetyltransferase (GNAT) family. no signal peptide no TMHs%3B~Family membership	gene	gene3838	http://www.ncbi.nlm.nih.gov/gene/?term=azo3778
azo3779	azo3779	ybiT	ybiT	4140608	4142233	+	probable ATP-binding ABC transporter protein	Hypothetical ABC transporter ATP-binding protein ybiT. Probably involved in the transport of Cobalt%2Cbranched chain amino acids %2C or multi drug resistance. Occurence of tub domains%2C uridine kinase domain%2C DUF and RecF protein like domains. Signal P present. Central region%3B~Family membership	gene	gene3839	http://www.ncbi.nlm.nih.gov/gene/?term=azo3779
azo3780	azo3780	ptsL	ptsL	4142403	4142786	+	putative IIa component of sugar transport PTS system	This is a component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active -transport system. The IICD domains contain the sugar binding site and the transmembrane channel%3B the IIA domain contains the primary phosphorylation site (the donor is phospho-HPr)%3B IIA transfers its phosphoryl group to the IIB domain which finally transfers it to the sugar. 32%25 EIIA-man.IPR004720%3B PTSIIB_sorb. Pfam:PF03610%3B EIIA-man%3B 1.PF03830%3B PTSIIB_sorb%3B 1.%3B~Specificity unclear	gene	gene3840	http://www.ncbi.nlm.nih.gov/gene/?term=azo3780
azo3781	azo3781	ptsH	ptsH	4142798	4143067	+	putative phosphocarrier protein HPr	Phosphocarrier protein HPr (Histidine-containing protein) (Protein H). This is a component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active -transport system. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein HPr by enzyme I. Phospho-HPr then transfers it to the permease (enzymes II/III). HPr is common to all PTS (By similarity). 64%25 HPr_HisP_S.IPR000032%3B HPr_protein.IPR002114%3B HPr_SerP_S. IPR005698%3B PTS_HPr. Pfam:PF00381%3B PTS-HPr%3B 1.%3B~High confidence in function and specificity	gene	gene3841	http://www.ncbi.nlm.nih.gov/gene/?term=azo3781
azo3782	azo3782	ptsI	ptsI	4143071	4144801	+	putative Phosphoenolpyruvate-protein phosphotransferase	Phosphoenolpyruvate-protein phosphotransferase(Phosphotransferase system enzyme I)(Protein I).This is a component of the phosphoenolpyruvate dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active -transport system. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr). Enzyme I is common to all PTS. 54%25 PEP-utilisers_N.IPR008279%3B PEP_mobile.IPR006318%3B PEP_P_trans.IPR000121%3B PEP_utilizers. Pfam:PF05524%3B PEP-utilisers_N%3B 1.PF00391%3B PEP-utilizers%3B 1.PF02896%3B PEP-utilizers_C%3B 1. TIGRFAMs:TIGR01417%3B PTS_I_fam%3B 1.%3B~High confidence in function and specificity	gene	gene3842	http://www.ncbi.nlm.nih.gov/gene/?term=azo3782
azo3783	azo3783		azo3783	4145096	4146052	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Daro03001609 of Dechloromonas aromatica of 35%25 (gi|53730883|ref|ZP_00151781.2|(NBCI ENTREZ)). No domains predicted. Signal peptide present. No TMH reported Present.%3B~Conserved hypothetical protein	gene	gene3844	http://www.ncbi.nlm.nih.gov/gene/?term=azo3783
azo3784	azo3784		azo3784	4146076	4146408	-	hypothetical secreted protein	Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. TMH in signal peptide	gene	gene3845	http://www.ncbi.nlm.nih.gov/gene/?term=azo3784
azo3785	azo3785		azo3785	4146462	4146809	-	hypothetical protein		gene	gene3846	http://www.ncbi.nlm.nih.gov/gene/?term=azo3785
azo3786	azo3786	hupS	hupS	4146921	4148009	+	ferredoxin hydrogenase%2C small chain	Ferredoxin hydrogenase%2C small subunit. Homology to hoxK of A. eutrophus of 83%25 (sprot:MBHS_ALCEU). This enzyme recycles the H(2) produced by nitrogenase to increase the production of ATP and to protect nitrogenase against inhibition or damage by O(2) under carbon- or phosphate-limited conditions. Tigrfam: hydA: hydrogenase (NiFe) small subunit Pfam: NADH ubiquinone oxidoreductase 20kD signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3847	http://www.ncbi.nlm.nih.gov/gene/?term=azo3786
azo3787	azo3787	hupL	hupL	4148006	4149802	+	probable ferredoxin hydrogenase%2C large chain	Probable ferredoxin hydrogenase%2C large subunit. Homology to hoxG of A. eutrophus of 68%25 (>sprot|MBHL_ALCEU). This enzyme recycles the H(2) produced by nitrogenase to increase the production of ATP and to protect nitrogenase against inhibition or damage by O(2) under carbon- or phosphate-limited conditions. Pfam: Nickel dpendent hydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3848	http://www.ncbi.nlm.nih.gov/gene/?term=azo3787
azo3788	azo3788	hupC	hupC	4149947	4150654	+	probable Ni/Fe-hydrogenase%2C B-type cytochrome subunit	Probable Ni/Fe-hydrogenase%2C B-type cytochrome subunit. Homology to hupZ of A. chroococcum of 65%25 (sprot|CYBH_AZOCH) Probable b-type cytochrome. InterPro: Nickel-dependent hydrogenase b-type cytochrome subunit (IPR000516) Pfam: Nickel-dependent hydrogenase b-type cytrochrome subunit no signal peptide 4 TMHs%3B~High confidence in function and specificity	gene	gene3849	http://www.ncbi.nlm.nih.gov/gene/?term=azo3788
azo3789	azo3789		azo3789	4150663	4151007	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ne1110 of N. europaea of 35%25 (trembl|Q82VH8). InterPro: Helix-turn-helix motif (IPR0001387). Pfam: Helix-turn-helix. no signal peptide. no TMHs	gene	gene3850	http://www.ncbi.nlm.nih.gov/gene/?term=azo3789
azo3790	azo3790		azo3790	4151089	4151679	+	conserved hypothetical glutathione peroxidase	Conserved hypothetical glutathione peroxidase. Homology to gpwA of P. wisconsinensis of 52%25 (SWISSPROT:GPWA_PSEWI). Glutathione peroxidase (GSHPx)%2C an enzyme whose principal function is to protect against damage from endogenously-formed hydroxyperoxides%2Ccatalyses the reduction of hydroxyperoxides by glutathione. InterPro: Glutathione peroxidase (IPR000889)%2CType I antifreeze protein (IPR000104). Pfam: Glutathione peroxidase. signal peptide. no TMHs%3B~Family membership	gene	gene3851	http://www.ncbi.nlm.nih.gov/gene/?term=azo3790
azo3791	azo3791		azo3791	4151699	4153393	-	conserved hypothetical ATPase	Conserved hypothetical ATPase. Homology to MCA0262 of Methylococcus capsulatus of 68%25 (gi|53756248|gb|AAU90539.1|(NBCI ENTREZ)). InterPro: AAA-protein (ATPases associated with various cellular activities) (IPR003959)%3BAAA ATPase superfamily (IPR003593) Pfam: ATPase family associated with various cellular activities (domaine from 365 aa to 540 aa) no signal peptide. no TMHs.%3B~Function unclear	gene	gene3852	http://www.ncbi.nlm.nih.gov/gene/?term=azo3791
azo3792	azo3792	hupD	hupD	4153728	4154408	+	hydrogenase expression/formation protein hupD	Hydrogenase expression/formation protein hupD%2C 54%25 identity%2C(63%25 simialrity) to SwissProt:Q03004. Aliases: hoxM(SwissProt:P40591)%2C hyaD(E.coli). Has PF01750:Hydrogenase maturation protease%3BThe family consists of hydrogenase maturation proteases. In E. coli HypI the hydrogenase maturation protease is involved in processing of HypE the large subunit of hydrogenases 3%2C by cleavage of its C-terminal. IPR000671:Peptidase_M52%3B TIGR00072%3B hydrog_prot%3B Signal P reporting SIgnal peptide Present. No TMH present.%3B~High confidence in function and specificity	gene	gene3853	http://www.ncbi.nlm.nih.gov/gene/?term=azo3792
azo3793	azo3793	hupF	hupF	4154410	4154721	+	putative Hydrogenase expression/formation protein hupF	Putative Hydrogenase expression/formation protein hupF%2C43%25 similarity to TrEMBL%3B Q6PTB2. No Signal Peptide or TMH reported present. Has PF01455:HupF/HypC family(IPR001109)%3BThe large subunit of [NiFe]-hydrogenase%2Cas well as other nickel metalloenzymes%2C is synthesized as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HUPF/HYPC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process . They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation.%3B~High confidence in function and specificity	gene	gene3854	http://www.ncbi.nlm.nih.gov/gene/?term=azo3793
azo3794	azo3794	hupG	hupG	4154718	4155176	+	Hydrogenase-1 operon protein hyaE	Hydrogenase-1 operon protein HyaE%2C 50%25 similarity to TrEMBL%3BQ8XGC7%2C 46%25 similarity to SwissProt%3BP19931. Alias: hupG Has PF07449:Hydrogenase-1 expression protein HyaE(IPR010893)%3BThis family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the E. coli protein HyaE%2C and the homologous proteins HoxO of R. eutropha and HupG of R. leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity%2C suggesting that it has a critical role in hydrogenase assembly. No signal peptide or TMH reported present.%3B~High confidence in function and specificity	gene	gene3855	http://www.ncbi.nlm.nih.gov/gene/?term=azo3794
azo3795	azo3795	hupH	hupH	4155192	4156064	+	hydrogenase-1 operon protein hupH	Hydrogenase expression/formation protein hupH%2C 58%25 similarity to SwissProt:Q03007. TrEMBL%3BQ6PTB0%2CTrEMBL%3BP95499%2C SwissProt%3BP19932. Has PF04809(IPR006894):HupH hydrogenase expression protein%2C C-terminal conserved region%3BThis family represents a C-terminal conserved region found in these bacterial proteins necessary for hydrogenase synthesis. Their precise function is unknown. No Signal peptide or TMH reported Present.%3B~High confidence in function and specificity	gene	gene3856	http://www.ncbi.nlm.nih.gov/gene/?term=azo3795
azo3796	azo3796	hupI	hupI	4156109	4156321	+	probable rubredoxin protein.	Probable rubredoxin protein%2C 61%25 Identity to SProt%3BP30778%2C P31912. Has PF00301%2C Rubredoxin%3BRubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer%2Csometimes replacing ferredoxin as an electron carrier. No signal peptide. No TMHs.%3B~High confidence in function and specificity	gene	gene3857	http://www.ncbi.nlm.nih.gov/gene/?term=azo3796
azo3797	azo3797	hupJ	hupJ	4156321	4156887	+	probable Hydrogenase expression/formation protein	Probable Hydrogenase expression/formation protein hupJ%2C 52%25 similarity to SwissProtP28152. Alias:hybE No Signal Peptide or TMH reported present. thiM: hydroxyethylthiazole kinase	gene	gene3858	http://www.ncbi.nlm.nih.gov/gene/?term=azo3797
azo3798	azo3798	hupK	hupK	4156888	4157994	+	putative hydrogenase expression/formation protein HupK	Putative hydrogenase expression/formation protein HupK. Homology to hupK of R. leguminosarum of 33%25 (gi|48731|emb|CAA37158.1|(NCBI ENTREZ). No domains predicted. No signal peptide or TMH present.%2C %2C%3B~Family membership	gene	gene3859	http://www.ncbi.nlm.nih.gov/gene/?term=azo3798
azo3799	azo3799	hypA	hypA	4157987	4158331	+	probable hydrogenase nickel inorporation protein hypA	Hydrogenase nickel incorporation protein hypA. Homology to hypA2 of A. eutrophus of 50%25 (AAB60888). Probably plays a role in an hydrogenase nickel cofactor insertion step. Pfam: Hydrogenase eypression/synthesis hypA Tigrfam: hypA: hydrogenase expression/formation protein no TMHs%3B~High confidence in function and specificity	gene	gene3860	http://www.ncbi.nlm.nih.gov/gene/?term=azo3799
azo3800	azo3800	hypB	hypB	4158470	4159393	+	probable hydrogenase accessory protein HypB	Probable hydrogenase accessory protein HypB. Homology to hypB of E. coli of 56%25 (sprot|HYPB_ECOLI). IS REQUIRED FOR THE FORMATION OF HYDROGENASE ISOENZYMES. AFFECTS SOME ASPECT OF THE PROCESSING OF HYDROGENASES and NICKEL INCORPORATION scince HYPB GENE LESIONS CAN BE COMPLEMENTED BY HIGH NICKEL ION CONCENTRATION IN THE MEDIUM. Pfam: HypB/UreG nucleotide-binding domain Tigrfam: hypB: hydrogenase accessory protein Hyp no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3861	http://www.ncbi.nlm.nih.gov/gene/?term=azo3800
azo3801	azo3801	hypF	hypF	4159390	4161762	+	probable hydrogenase maturation protein HypF	probable hydrogenase maturation protein HypF. Homology to hypF2 of A. eutrophus of 58%25 (sprot|HYF2_ALCEU). Involved in the hydrogenase maturation process. InterPro: Hydrogenase maturation protein HypF (IPR00421)%2C SuA5/yciO/yrdC family (IPR004388)%3B Acylphosphatase (IPR001792) Pfam: Acylphosphatase%2C yrdC domain Tigrfam: hypF: hydrogenase maturation protein H no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3862	http://www.ncbi.nlm.nih.gov/gene/?term=azo3801
azo3802	azo3802	hypC	hypC	4161767	4162006	+	probable hydrogenase assembly chaperon HypC	Probable hydrogenase assembly chaperon HypC. Homology to hypC of R. leguminosarum of 61%25 (sprot|HYPC_RHILV). Forms a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation. Pfam: HypF/HypC family Tigrfam: hypC_hupF: hydrogenase assembly chaperone no signal peptide no TMHs%3B~Function unclear	gene	gene3863	http://www.ncbi.nlm.nih.gov/gene/?term=azo3802
azo3803	azo3803	hypD	hypD	4162003	4163145	+	hydrogenase expression/formation protein HypD	Hydrogenase expression/formation protein hypD. Homology to hypD of A. eutrophus of 71%25 (sprot|HYPD_ALCEU). HypD is involved in hydrogenase formation. InterPro: Hydrogenase formation hypA (IPR002780) Pfam: Hydrogenase formation hypA family Tigrfam: hypD: hydrogenase expression/formation no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3864	http://www.ncbi.nlm.nih.gov/gene/?term=azo3803
azo3804	azo3804	hypE	hypE	4163214	4164266	+	hydrogenase expression/formation protein hypE	Hydrogenase expression/formation protein hypE%2C 64%25 Identity to SProt%3BP31905%2CTrEMBL%3BQ6NB52(60%25 Identity)%2CQ83WU6. Has PF00586%2C AIR synthase related protein%2C N-terminal domain%3BIPR000728 AIR_synth%3B This family includes Hydrogen expression/formation protein%2C HypE%2C which may be involved inthe maturation of NifE hydrogenase%3B AIR synthase and FGAM synthase%2C which are involved in de novo purine biosynthesis%3B and selenide%2C water dikinase%2C an enzyme which synthesizes selenophosphate from selenide and ATP. PF02769%2C AIR synthase related protein%2C C-terminal domain%3BIPR010918 AIR_synth_C%3B This entry includes Hydrogen expression/formation protein%2C HypE%2C which may be involved in the maturation of NifE hydrogenase%3B AIR synthase and FGAM synthase%2C which are involved in de novo purine biosynthesis%3B and selenide%2C water dikinase%2C an enzyme which synthesizes selenophosphate from selenide and ATP.	gene	gene3865	http://www.ncbi.nlm.nih.gov/gene/?term=azo3804
azo3805	azo3805	hoxA	hoxA	4164280	4165737	+	hydrogenase transcriptional regulatory protein	Hydrogenase transcriptional regulatory protein%2C%3B~High confidence in function and specificity	gene	gene3866	http://www.ncbi.nlm.nih.gov/gene/?term=azo3805
azo3806	azo3806		azo3806	4165753	4166049	-	Hypothetical protein	Hypothetical protein%2C 33%25 Identity to TrEMBL%3BQ8XRA3 Has No domains%2C repeats%2C motifs or features could be predicted above threshold.	gene	gene3867	http://www.ncbi.nlm.nih.gov/gene/?term=azo3806
azo3807	azo3807	hoxB	hoxB	4166203	4167198	+	ferredoxin hydrogenase%2C small subunit	Ferredoxin hydrogenase%2C small subunit. Homology to hoxB of A. hydrogenophilus of 75%25 (TREMBL:P94154). Hydrogenases catalyse the reversible oxidation of molecular hydrogen and play a vital role in anaerobic metabolism. InterPro: Hydrogenase (NiFe) small subunit HydA (IPR001821)%3B Respiroatory-chain NADH dehydrogenase 20 kD subunit (IPR006137) Tigrfam: hydA: hydrogenase (NiFe) small subunit (hydA) Pfam: NADH ubiquinone oxidoreductase no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3868	http://www.ncbi.nlm.nih.gov/gene/?term=azo3807
azo3808	azo3808	hoxC	hoxC	4167356	4168807	+	probable ferredoxin hydrogenase%2C large subunit	Probable ferredoxin hydrogenase%2C large subunit. Homology to hoxC of A. hydrogenophilus of 59%25 (trembl|P94155). InterPro: Nickel-dependent hydrogenases large subunit	gene	gene3869	http://www.ncbi.nlm.nih.gov/gene/?term=azo3808
azo3809	azo3809		azo3809	4168926	4170437	+	conserved hypothetical membrane protein	Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein	gene	gene3870	http://www.ncbi.nlm.nih.gov/gene/?term=azo3809
azo3810	azo3810	hoxJ	hoxJ	4170469	4171854	+	hydrogen uptake histidine-kinase	Putative hydrogen uptake histidine-kinase%2CATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR005467%3B His_kinase. IPR003661%3B His_kinA_N. IPR009082%3B His_kin_homodim. IPR001610%3B PAC. IPR000700%3B PAS-assoc_C. IPR000014%3B PAS_domain. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00086%3B PAC. SM00091%3B PAS.%3B~High confidence in function and specificity	gene	gene3871	http://www.ncbi.nlm.nih.gov/gene/?term=azo3810
azo3811	azo3811	ntaB	ntaB	4171861	4172355	-	probable nitrilotriacetate monooxygenase	Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) (NTA monooxygenase component B) (NTA-MO B). HYDROXYLATION OF NITRILOTRIACETATE. TREMBL:Q7W4Q0: 46%25 identity%2C 65%25 similarity InterPro: Flavin reductase-like domain Interpro:IPR002563 Pfam:PF01613 No signal peptide No transmembrane helices monomer_idh: isocitrate dehydrogenase NA%3B~High confidence in function and specificity	gene	gene3872	http://www.ncbi.nlm.nih.gov/gene/?term=azo3811
azo3812	azo3812	mutY	mutY	4172470	4173570	+	putative A/G-specific adenine glycosylase	A/G-specific adenine glycosylase (EC 3.2.2.-). ADENINE GLYCOSYLASE ACTIVE ON G-A MISPAIRS. MUTY ALSO CORRECTS ERROR-PRONE DNA SYNTHESIS PAST GO LESIONS WHICH ARE DUE TO THE OXIDATIVELY DAMAGED FORM OF GUANINE: 78-DIHYDRO-8- OXOGUANINE.%3B~Specificity unclear	gene	gene3873	http://www.ncbi.nlm.nih.gov/gene/?term=azo3812
azo3813	azo3813		azo3813	4173767	4174366	-	conserved hypothetical ATP-dependent protease La	Conserved hypothetical ATP-dependent protease La. Homology to rsc0402 of R. solanacearum of 44%25 (trembl|Q8Y2D4). N-terminal domain of the ATP-dependent protease La (LON)%2C present also in other bacterial ORFs. InterPro: ATP-dependent protease La (LON) domain (IPR003111). Pfam: ATP-dependent protease La (LON) domain. no signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3874	http://www.ncbi.nlm.nih.gov/gene/?term=azo3813
azo3814	azo3814	ubiX	ubiX	4174401	4175030	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Probable aromatic acid decarboxylase (EC 4.1.1.-). InterPro: Flavoprotein ubiX: phenylacrylic acid decarboxylase%3B~High confidence in function and specificity	gene	gene3875	http://www.ncbi.nlm.nih.gov/gene/?term=azo3814
azo3815	azo3815		azo3815	4175247	4175798	+	probable phasin	Probable phasin. Homology to p8 of Sphingomonas sp. A1 of 49%25 (gi|51773776|dbj|BAD38885.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.%2C%3B~Function unclear	gene	gene3876	http://www.ncbi.nlm.nih.gov/gene/?term=azo3815
azo3816	azo3816		azo3816	4175897	4176934	-	putative AraC family transcriptional regulator	Putative AraC family transcriptional regulator%2C%3B~Family membership	gene	gene3877	http://www.ncbi.nlm.nih.gov/gene/?term=azo3816
azo3817	azo3817		azo3817	4177099	4178040	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to slr1189 of Synechocystis of 43%25 (trembl|P74718). Pfam: Homocystein S-transferase. no signal peptide. no TMHs.	gene	gene3878	http://www.ncbi.nlm.nih.gov/gene/?term=azo3817
azo3818	azo3818	livK5	livK5	4178048	4179208	-	putative leucine-specific binding protein	In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to sprot|LIVK_SALTY (20%25) and to tremblnew|CAE26678 (39%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene3879	http://www.ncbi.nlm.nih.gov/gene/?term=azo3818
azo3819	azo3819	livM6	livM6	4179274	4180221	-	putative branched-chain amino acid transport permease	Putative branched-chain amino acid transporter permease. Homology to livM of E. coli of 32%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) Pfam: Branched-chain amino acid transport system. signal peptide probable 10 TMHs%3B~Specificity unclear	gene	gene3880	http://www.ncbi.nlm.nih.gov/gene/?term=azo3819
azo3820	azo3820		azo3820	4180301	4181158	-	ABC transporter permease protein	Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q89C65 (46%25)%2C to sprot|LIVH_ECOLI (33%25) and to sprot|BRAD_PSEAE (30%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting seven Tmhelix. SignalP reporting Signal peptide.%3B~Specificity unclear	gene	gene3881	http://www.ncbi.nlm.nih.gov/gene/?term=azo3820
azo3821	azo3821	ncd2	ncd2	4181166	4182143	-	putative 2-nitropropane dioxygenase	2-nitropropane dioxygenase precursor (EC 1.13.11.32) (Nitroalkane oxidase) (2-NPD). SPROT:Q01284: 28%25 identity%2C 44%25 similarity CATALYZES THE OXIDATION OF NITROALKANES TO PRODUCE THE CORRESPONDING CARBONYL COMPOUNDS. IT ACTS ON 2-NITROPROPANE BETTER THAN ON NITROETHANE AND 1-NITROPROPANE AND ANIONIC FORMS OF NITROALKANES ARE MUCH BETTER SUBSTRATES THAN ARE NEUTRAL FORMS. InterPro: 2-nitropropane dioxygenase InterPro%3B IPR004136%3B 2nprop_dioxygen. InterPro%3B IPR003009%3B FMN_enzyme. Pfam%3B PF03060%3B NPD thiE: thiamine-phosphate pyrophosphoryl Non-secretory protein with signal peptide probability:0.004 Absence of TMH's%3B~High confidence in function and specificity	gene	gene3882	http://www.ncbi.nlm.nih.gov/gene/?term=azo3821
azo3822	azo3822	mscL	mscL	4182309	4182734	+	large-conductance mechanosensitive channel	Large-conductance mechanosensitive channel. Forms a nonselective ion channel of 2.5 ns conductance (By similarity). mscL: large conductance mechanosensitive%3B~High confidence in function and specificity	gene	gene3883	http://www.ncbi.nlm.nih.gov/gene/?term=azo3822
azo3823	azo3823	ycbL	ycbL	4182759	4183517	-	conserved hypothetical protein	Hypothetical protein ycbL. TREMBL:Q7P1X5-63%25 identity. Interpro:IPR001279-Blactamase like Pfam-GlyoxylaseII family relationship. Phosphoribosylglycinamide synthetase%2CRespiratory chain NADH dehydrogenase%3B KH domain and RTX toxin acyltransferase family relationship. ispD: 4-diphosphocytidyl-2C-methyl-D-ery%3B~High confidence in function and specificity	gene	gene3884	http://www.ncbi.nlm.nih.gov/gene/?term=azo3823
azo3824	azo3824	imp	imp	4183561	4184352	-	putative inositol monophosphatase protein	Inositol-1(or4)-monophosphatase 3IMPase3)(IMP3)(Inositol monophosphatase 3).Responsible for the provision of inositol required for synthesis of phosphatidylinositol and polyphosphoinositides. 26%25 Inositol_P. Pfam:PF00459%3B Inositol_P%3B 1.%3B~High confidence in function and specificity	gene	gene3885	http://www.ncbi.nlm.nih.gov/gene/?term=azo3824
azo3825	azo3825	fbpA2	fbpA2	4184498	4185523	+	putative ferric transport system%2C periplasmic-binding protein	Part of the ABC transporter complex FbpABC involved in ferric import. Similar to the putative periplasmic-binding protein FbpA precursor in A. pleuropneumoniae. 39%25 SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. Signal peptide:1 TMHelix:1%3B~Specificity unclear	gene	gene3886	http://www.ncbi.nlm.nih.gov/gene/?term=azo3825
azo3826	azo3826	fbpC2	fbpC2	4185569	4186576	+	Fe3+-transporting ATPase	Ferric cations import ATP-binding protein fbpC (EC 3.6.3.30).Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in ferric cations import. Responsible for energy coupling to the transport system. 41%25 AAA_ATPase. IPR003439%3B ABC_transporter. Pfam: PF00005%3BABC_tran%3B 1.%3B~Specificity unclear	gene	gene3887	http://www.ncbi.nlm.nih.gov/gene/?term=azo3826
azo3827	azo3827		azo3827	4186656	4188308	+	putative ferrric transport system%2C permease protein	Region start changed from 4186498 to 4186630 (-132 bases)	gene	gene3888	http://www.ncbi.nlm.nih.gov/gene/?term=azo3827
azo3828	azo3828	glpR	glpR	4188333	4189109	+	putative glycerol-3-phosphate regulon repressor	Glycerol-3-phosphate regulon repressor. 26%25 HTH_DeoR. Pfam:PF00455%3B DeoR%3B 1. Nucleic acid binding motif%2C present.%3B~High confidence in function and specificity	gene	gene3889	http://www.ncbi.nlm.nih.gov/gene/?term=azo3828
azo3829	azo3829	eutB	eutB	4189133	4190521	+	probable ethanolamine ammonia-lyase large subunit	Probable ethanolamine ammonia-lyase (EC 4.3.1.7) large subunit. Homology to eutB of S. typhimurium of 50%25 (trembl|Q8XUQ9) Catalyzes the deamination of various vicinal amino- alcohols to oxo compounds. no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3890	http://www.ncbi.nlm.nih.gov/gene/?term=azo3829
azo3830	azo3830	eutC	eutC	4190532	4191356	+	putative ethanolamine ammonia-lyase small subunit	Ethanolamine ammonia-lyase (EC 4.3.1.7) small subunit. Homology to eutC of S. typhimurium of 35%25 (sprot|EUTC_SALTY) catalyzes the deamination of various vicinal amino- alcohols to oxo compounds. no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3891	http://www.ncbi.nlm.nih.gov/gene/?term=azo3830
azo3831	azo3831		azo3831	4191496	4192371	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to rpa0361 of R. palustris off 67%25 (tremblnew|CAE25805). no domains predicted .signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein	gene	gene3892	http://www.ncbi.nlm.nih.gov/gene/?term=azo3831
azo3832	azo3832		azo3832	4192520	4193338	-	ABC-type tungstate transport system%2C permease component	Putative ABC-type tungstate transport system%2Cpermease component.%3B~Function unclear	gene	gene3893	http://www.ncbi.nlm.nih.gov/gene/?term=azo3832
azo3833	azo3833		azo3833	4193453	4194556	+	putative molybdenum-binding protein	31%25 HTH_9%3B 1. InterPro: IPR003725%3B ModE:Molybdenum-binding protein N-terminal. ModE are involved in molybdenum transport.These proteins acts both as a repressor and activator of the mod and moa operons%2Crespectively%2C depending on the properties of the binding site.%3B~High confidence in function and specificity	gene	gene3894	http://www.ncbi.nlm.nih.gov/gene/?term=azo3833
azo3834	azo3834		azo3834	4194613	4195911	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to vv12967 of V. vulnificus of 47%25 (trembl|Q8D8K5). Pfam: DUF1111. no signal peptide. no TMHs	gene	gene3895	http://www.ncbi.nlm.nih.gov/gene/?term=azo3834
azo3835	azo3835	pgtC	pgtC	4195950	4197269	-	putative regulatory lipoprotein	Phosphoglycerate transport regulatory protein pgtC precursor.Required for pgtP expression it may act jointly with the pgtA/pgtB signaling proteins.29%25 SBP_bac_1: Bacterial extracellular solute-binding protein family 1. Pfam:PF01547%3B SBP_bac_1%3B 1. Signal peptide:present.%3B~High confidence in function and specificity	gene	gene3896	http://www.ncbi.nlm.nih.gov/gene/?term=azo3835
azo3836	azo3836		azo3836	4197290	4199275	-	probable TonB-dependent receptor	Probable Iron-regulated outer membrane TonB-dependent receptor. 35%25 TonB_receptor.IPR010917%3B TonB_recept_C.IPR010105%3B TonB_siderophor. Pfam:PF00593%3B TonB_dep_Rec%3B 1. TIGRFAMs:TIGR01783%3B TonB-siderophor%3B 1. Signal peptide:present.%3B~Function unclear	gene	gene3897	http://www.ncbi.nlm.nih.gov/gene/?term=azo3836
azo3837	azo3837	modC1	modC1	4199407	4200564	-	putative molybdenum transport system%2C ATP-binding protein	80%25 AAA_ATPase superfamily. IPR003439%3B ABC_transporter. IPR008995%3B MOP_like:molybdenum-pterin binding domain.IPR005116%3B TOBE. Pfam:PF00005%3B ABC_tran%3B 1.PF03459%3B TOBE%3B 1.%3B~High confidence in function and specificity	gene	gene3898	http://www.ncbi.nlm.nih.gov/gene/?term=azo3837
azo3838	azo3838	modB1	modB1	4200561	4201241	-	putative molybdenum transport system permease protein	72%25 BPD_transp.Binding-protein-dependent transport systems inner membrane component. Pfam:PF00528%3B BPD_transp%3B 1. TMHelix:6%3B~High confidence in function and specificity	gene	gene3899	http://www.ncbi.nlm.nih.gov/gene/?term=azo3838
azo3839	azo3839	modA1	modA1	4201261	4202022	-	putative molybdate transport system%2C periplasmic-binding protein	73%25 MolP_ABC_transpt.IPR000437%3B prok_lipoprot_S. IPR006059%3B SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. TIGRFAMs:TIGR01256%3B modA%3B 1. Signal peptide: present.%3B~High confidence in function and specificity	gene	gene3900	http://www.ncbi.nlm.nih.gov/gene/?term=azo3839
azo3840	azo3840	modE	modE	4202077	4202904	-	putative molybdenum transport protein	80%25 ModE.IPR004606%3B Mop.IPR008995%3B MOP_like.IPR005116%3B TOBE.Molybdenum-binding protein N-terminal. Pfam:PF02573%3B HTH_9%3B 1.PF03459%3B TOBE%3B 2. TIGRFAMs:TIGR00637%3B ModE_repress%3B 1:ModE molybdate transport.TIGR00638%3B Mop%3B 2.%3B~High confidence in function and specificity	gene	gene3901	http://www.ncbi.nlm.nih.gov/gene/?term=azo3840
azo3841	azo3841	modG	modG	4203085	4203513	+	putative molybdenum-pterin-binding-protein	80%25 Mop.IPR008995%3BMOP_like.IPR005116%3BTOBE.InterPro: Molybdenum-pterin binding domain. Mop: molybdenum-pterin binding domain Pfam: PF03459%3B TOBE%3B 2. TIGRFAMs:TIGR00638%3B Mop%3B 2.%3B~High confidence in function and specificity	gene	gene3902	http://www.ncbi.nlm.nih.gov/gene/?term=azo3841
azo3842	azo3842	modC2	modC2	4203575	4204612	+	putative molybdate transport system ATP-binding protein	39%25 AAA_ATPase superfamily. IPR003439%3B ABC_transporter. IPR008995%3B MOP_like:molybdenum-pterin binding domain.IPR005116%3B TOBE. Pfam:PF00005%3B ABC_tran%3B 1.PF03459%3B TOBE%3B 1.%3B~High confidence in function and specificity	gene	gene3903	http://www.ncbi.nlm.nih.gov/gene/?term=azo3842
azo3843	azo3843		azo3843	4204593	4205462	-	putative exported protein	Putative exported protein.SignalP reporting signal peptice. Most likely cleavage site between pos. 27 and 28: AHA-AP%3B~Function unclear	gene	gene3904	http://www.ncbi.nlm.nih.gov/gene/?term=azo3843
azo3844	azo3844		azo3844	4205489	4207765	-	putative TonB-dependent receptor	Region start changed from 4207859 to 4207739 (-120 bases)	gene	gene3905	http://www.ncbi.nlm.nih.gov/gene/?term=azo3844
azo3845	azo3845	modB2	modB2	4208004	4208693	-	putative molybdenum ABC transporter permease protein	36%25 BPD_transp.Binding-protein-dependent transport systems inner membrane component. Pfam:PF00528%3B BPD_transp%3B 1. TMHelix:5 Signal peptide:present%3B~High confidence in function and specificity	gene	gene3906	http://www.ncbi.nlm.nih.gov/gene/?term=azo3845
azo3846	azo3846	modA2	modA2	4208693	4209478	-	putative molybdate transport system substrate-binding protein	23%25 MolP_ABC_transpt.IPR000437%3B prok_lipoprot_S. IPR006059%3B SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. TIGRFAMs:TIGR01256%3B modA%3B 1. Signal peptide: present.%3B~High confidence in function and specificity	gene	gene3907	http://www.ncbi.nlm.nih.gov/gene/?term=azo3846
azo3847	azo3847		azo3847	4209537	4209923	-	conserved hypothetical protein	conserved hypothetical protein. Homology to Daro03003735 of Dechloromonas aromatica of 35%25 (gi|41722661|ref|ZP_00149650.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.	gene	gene3908	http://www.ncbi.nlm.nih.gov/gene/?term=azo3847
azo3848	azo3848	yhjG	yhjG	4210313	4212361	+	outer membrane protein	Function unclear	gene	gene3909	http://www.ncbi.nlm.nih.gov/gene/?term=azo3848
azo3849	azo3849		azo3849	4212375	4214444	-	GGDEF/EAL/PAS/PAC-domain containing protein	GGDEF/EAL/PAS/PAC-domain containing protein	gene	gene3910	http://www.ncbi.nlm.nih.gov/gene/?term=azo3849
azo3850	azo3850	recD	recD	4214513	4216465	-	DNA helicase%2C ATP-dependent dsDNA/ssDNA exonuclease V subunit%2C ssDNA endonuclease	Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (Exodeoxyribonuclease V 67 kDa polypeptide). EXHIBITS SEVERAL CATALYTIC ACTIVITIES INCLUDING ATP-DEPENDENT EXONUCLEASE ATP-STIMULATED ENDONUCLEASE ATP-DEPENDENT UNWINDING AND DNA-DEPENDENT ATPASE ACTIVITIES. STRAND CLEAVAGE OCCURS 5 TO 3 DURING THE UNWINDING OF DUPLEX DNA AT CHI SEQUENCES WHICH LOCALLY STIMULATE RECOMBINATION. InterPro: AAA ATPase superfamily%3B~High confidence in function and specificity	gene	gene3911	http://www.ncbi.nlm.nih.gov/gene/?term=azo3850
azo3851	azo3851	recB	recB	4216462	4220187	-	ATP-dependent exoDNAse beta subunit	Exodeoxyribonuclease V beta chain (EC 3.1.11.5) (Exodeoxyribonuclease V 135 KDA polypeptide). REQUIRED FOR EFFICIENT DNA REPAIR%3B IT CATALYZES THE UNWINDING OF DOUBLE-STRANDED DNA AND THE CLEAVAGE OF SINGLE- STRANDED DNA AND IT STIMULATES LOCAL GENETIC RECOMBINATION. ALL OF THESE ACTIVITIES REQUIRE CONCOMITANT HYDROLYSIS OF ATP.%3B~High confidence in function and specificity	gene	gene3912	http://www.ncbi.nlm.nih.gov/gene/?term=azo3851
azo3852	azo3852	irgA2	irgA2	4220373	4222526	+	putative TonB-dependent receptor	24%25 TonB_boxC. Pfam:PF00593%3B TonB_dep_Rec%3B 1. Signal peptide present.%3B~High confidence in function and specificity	gene	gene3913	http://www.ncbi.nlm.nih.gov/gene/?term=azo3852
azo3853	azo3853		azo3853	4222614	4223768	+	conserved hypothetical protein	Conserved hypothetical protein%3B~Function unclear	gene	gene3914	http://www.ncbi.nlm.nih.gov/gene/?term=azo3853
azo3854	azo3854	ligT	ligT	4223747	4224304	+	2'-5' RNA ligase	2-5 RNA ligase (EC 6.5.1.-). Specifically ligates tRNA half-molecules containing nucleoside base modifications and shows a preference among different tRNA species. Acts in the absence of ATP to form a 2-5 phosphodiester linkage.	gene	gene3915	http://www.ncbi.nlm.nih.gov/gene/?term=azo3854
azo3855	azo3855		azo3855	4224451	4226037	+	putative alkaline phosphatase	Alkaline phosphatase (EC 3.1.3.1) (ALP)is a zinc and magnesium-containing metalloenzyme which hydrolyzes phosphate esters%2C optimally at high pH.It is found in nearly all living organisms%2Cwith the exception of some plants. 30%25 Alk_phosphtse.Alkaline phosphatase family Pfam:PF00245%3B alk_phosphatase%3B 1. Signal peptide present.%3B~High confidence in function and specificity	gene	gene3916	http://www.ncbi.nlm.nih.gov/gene/?term=azo3855
azo3856	azo3856		azo3856	4226137	4226919	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to Avin02002740 of Azotobacter vinelandii of 66%25 (gi|23103854|ref|ZP_00090328.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHS%3B~Conserved hypothetical protein	gene	gene3917	http://www.ncbi.nlm.nih.gov/gene/?term=azo3856
azo3857	azo3857	paaG6	paaG6	4226936	4227793	-	putative enoyl-CoA hydratase paaG	Function:- Could possibly oxidizes fatty acids using specific components (By similarity). Activity:-(3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H(2)O. Entry name:- SWISSPROT:PAAG_ECOLI InterPro:- IPR001753%3B EnCoA_hydrtse. Pfam:- PF00378%3B ECH%3B 1. Identities %3D 65/222 (29%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership	gene	gene3918	http://www.ncbi.nlm.nih.gov/gene/?term=azo3857
azo3858	azo3858	recC	recC	4227790	4231209	-	DNA helicase%2C ATP-dependent dsDNA/ssDNA exonuclease V subunit%2C ssDNA endonuclease	Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) (Exodeoxyribonuclease V 125 kDa polypeptide). EXHIBITS A WIDE VARIETY OF CATALYTIC ACTIVITIES INCLUDING ATP-DEPENDENT EXONUCLEASE ATP-STIMULATED ENDONUCLEASE ATP-DEPENDENT HELICASE AND DNA-DEPENDENT ATPASE ACTIVITIES.%3B~High confidence in function and specificity	gene	gene3919	http://www.ncbi.nlm.nih.gov/gene/?term=azo3858
azo3859	azo3859	yeaT	yeaT	4231262	4232182	-	putative transcriptional regulator%2C LysR family	Putative transcriptional regulator%2C LysR family%2C%3B~High confidence in function and specificity	gene	gene3920	http://www.ncbi.nlm.nih.gov/gene/?term=azo3859
azo3860	azo3860	yeaU	yeaU	4232582	4233661	+	tartrate dehydrogenase	Tartrate dehydrogenase catalyzes the reduction of tartrate to oxaloglycolate. Similar to sprot|TTUC_ECOLI (75%25) and to sprot|TTUC_PSEPU (76%25). Pfam (PF00180): Isocitrate and isopropylmalate dehydrogenases%3B~High confidence in function and specificity	gene	gene3921	http://www.ncbi.nlm.nih.gov/gene/?term=azo3860
azo3861	azo3861		azo3861	4233743	4233961	-	conserved hypothetical protein	Hypothetical protein%2C 73%25 identity(87%25 similarity) to TrEMBL%3BQ8XU60. No domains%2C repeats%2C motifs or features not present.%3B~Function unclear	gene	gene3922	http://www.ncbi.nlm.nih.gov/gene/?term=azo3861
azo3862	azo3862		azo3862	4234040	4234657	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. Homology to rsc2949 of R. solanacearum of 54%25 (trembl|Q8XV82(SRS)). Tigrfam: TIGR00427: conserved hypothetical protein. Pfam: Uncharacterised protein family. signal peptide. 5 TMHs	gene	gene3923	http://www.ncbi.nlm.nih.gov/gene/?term=azo3862
azo3863	azo3863		azo3863	4234851	4236512	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to ebA2737 of Azoarcus sp. EbN1 of 63%25 (gnl|keqq|eba:ebA2737(KEGG)). no domains predicted. no signal peptide. no TMHs	gene	gene3924	http://www.ncbi.nlm.nih.gov/gene/?term=azo3863
azo3864	azo3864		azo3864	4236519	4236902	-	conserved hypothetical cytochrome c family protein	Conserved hypothetical cytochrome c family protein. Homology to gsu2513 of G. sulfurreducens of 36%25 (tremblnew|AAR35886). Pfam: Cytochrome c. singal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3925	http://www.ncbi.nlm.nih.gov/gene/?term=azo3864
azo3865	azo3865	exaA5	exaA5	4236962	4238632	-	putative quinoprotein ethanol dehydrogenase	Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 32%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present. SWISSPROT:DHET_GLUOX:O05542.30%25%3B~High confidence in function and specificity	gene	gene3926	http://www.ncbi.nlm.nih.gov/gene/?term=azo3865
azo3866	azo3866		azo3866	4238668	4239555	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to GOX0515 of Gluconobacter oxydans of 36%25 (gnl|keqq|gox:GOX0515(KEGG)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3927	http://www.ncbi.nlm.nih.gov/gene/?term=azo3866
azo3867	azo3867	acoA2	acoA2	4239989	4240999	+	probable acetoin dehydrogenase%2C alpha subunit	Probable acetoin dehydrogenase%2C alpha subunit. Homology to acoA of C. magnum of 42%25 (trembl|Q46142) CATALYZES THE 26-DICHLOROPHENOLINDOPHENOL-DEPENDENT CLEAVAGE OF ACETOIN INTO ACETATE AND ACETALDEHYDE IN VITRO. THE ALPHA SUBUNIT IS PROBABLY THE CATALYTIC SUBUNIT OF THE ENZYME. Pfam: Dehydrogenase E1 component no signal peptide no TMHs%3B~Family membership	gene	gene3928	http://www.ncbi.nlm.nih.gov/gene/?term=azo3867
azo3868	azo3868	acoB2	acoB2	4241016	4242053	+	probable acetoin dehydrogenase%2C beta subunit	Probable acetoin dehydrogenase%2C beta subunit. Homology to acoB of. A. eutrophus of 48%25 (sprot|ACOB_ALCEU) Probable TPP-dependent acetoin dehydrogenase%2C beta subunit. Homology to acoB of A. eutrophus of 41%25 (sprot|ACOB_ALCEU) Catalyzes the 2%2C6-dichlorophenolindophenol-dependent cleavage of acetoin into acetate and acetaldehyde%2C in vitro. The beta subunit is probably not the catalytic subunit of the enzyme. InterPro: Transketolase (IPR005474) Pfam: Transketoase%2Cpyridine binding domain %3B Transketolase%2C C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3929	http://www.ncbi.nlm.nih.gov/gene/?term=azo3868
azo3869	azo3869		azo3869	4242264	4242509	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to oadh21d of H. volcanii of 33%25 (trembl|Q8U4T3). Pfam: Biotin-requiring enzyme. Interpro: Biotin/Lipoyl attachment (IPR000089). no signal peptide. no TMHs.	gene	gene3930	http://www.ncbi.nlm.nih.gov/gene/?term=azo3869
azo3870	azo3870		azo3870	4242513	4243226	+	hypothetical protein	Hypothetical protein. Homology of the entire orf to the C-terminus of dihydrolipoamide acetyltransferase. Pfam: 2-0xo acid dehydrogenase acyltransferase no TMHs no signal peptide	gene	gene3931	http://www.ncbi.nlm.nih.gov/gene/?term=azo3870
azo3871	azo3871		azo3871	4243226	4243996	+	putative lipoate protein ligase	Putative lipoate protein ligase%2C has weak homology with hits. 35%25 identity with TrEMBL%3BQ81M24%2CQ818P0. Has Signal peptide. Has PF03099%2C Biotin/lipoate A/B protein ligase family%3BIPR004143 BPL_LipA_LipB%3B This family includes biotin protein ligase%2C lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes.	gene	gene3932	http://www.ncbi.nlm.nih.gov/gene/?term=azo3871
azo3872	azo3872		azo3872	4244062	4244643	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology blr7490 of B.japonicum of 47%25 (trembl|Q89DE9(SRS)). No domains predicted .No TMHs. Signal peptide: present%3B~Conserved hypothetical protein	gene	gene3933	http://www.ncbi.nlm.nih.gov/gene/?term=azo3872
azo3873	azo3873		azo3873	4244733	4246307	+	putative glucase dehydrogenase alpha subunit	Putative glucase dehydrogenase alpha subunit. Homology to gdhalspha of B. cepacia of 31%25 (trembl|Q8GQE7). Pfam: GMC oxidoreductase no signal peptide no TMHs%3B~Function unclear	gene	gene3934	http://www.ncbi.nlm.nih.gov/gene/?term=azo3873
azo3874	azo3874		azo3874	4246369	4246983	+	conserved hypothetical secreted protein	Conserved hypothetical secreted protein.%3B~Conserved hypothetical protein	gene	gene3935	http://www.ncbi.nlm.nih.gov/gene/?term=azo3874
azo3875	azo3875		azo3875	4247215	4249182	+	Sigma-54-dependent transcriptional regulator	Similar to SWISSPROT:P28614 (44%25 identity)%3B TREMBL:Q9HWN4 (40%25 identity)%3B TREMBL:Q92X60 (38%25 identity). Pfam (PF02954): Bacterial regulatory protein%2CFis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif.%3B~Family membership	gene	gene3936	http://www.ncbi.nlm.nih.gov/gene/?term=azo3875
azo3876	azo3876		azo3876	4249321	4251393	+	conserved hypothetical protein	Rhs family protein%2CvgrG 38%25 identity(54%25 similarity) to TrEMBL%3BQ747T8. TrEMBL%3BO52672. Signal Peptide Present. Has PF04524%2C Protein of unknown function%2CDUF586%3BIPR006533%2C Rhs_Vgr:This family contains a conserved region in several bacterial proteins of unknown function. These sequences represent the Vgr family of proteins%2Cassociated with some classes of Rhs elements. This model does not include a large octapeptide repeat region%2CVGXXXXXX%2C found in the Vgr of Rhs classes G and E. Has PF06715%2C Gp5 C-terminal repeat (2 copies)%3BIPR010609%2CGp5_C:This repeat composes the C-terminal part of the bacteriophage T4 baseplate protein Gp5. This region of the protein forms a needle like projection from the baseplate that is presumed to puncture the bacterial cell membrane. Structurally three copies of the repeated region trimerise to form a beta solenoid type structure. This family also includes repeats from bacterial Vgr proteins.	gene	gene3937	http://www.ncbi.nlm.nih.gov/gene/?term=azo3876
azo3877	azo3877		azo3877	4251398	4252432	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to GSU3186 of G.sulfurreducens of 36%25 (tremblnew|AAR36577(SRS)). No domains predicted. No TMHs. No signal peptide.	gene	gene3938	http://www.ncbi.nlm.nih.gov/gene/?term=azo3877
azo3878	azo3878		azo3878	4252437	4253474	+	conserved hypothetical protein	Region start changed from 4252363 to 4252411 (-48 bases)	gene	gene3939	http://www.ncbi.nlm.nih.gov/gene/?term=azo3878
azo3879	azo3879		azo3879	4253497	4254504	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. no homology of the entier protein to the data bank. no domains predicted. no signal peptide. no TMHs	gene	gene3940	http://www.ncbi.nlm.nih.gov/gene/?term=azo3879
azo3880	azo3880		azo3880	4254527	4255069	+	hypothetical protein	Hypothetical protein. Homology to LA1152 of L.interrogans of 28%25 (trembl:Q8F6Z6). No domains predicted. No signal peptide. No TMHs	gene	gene3941	http://www.ncbi.nlm.nih.gov/gene/?term=azo3880
azo3881	azo3881		azo3881	4255159	4255536	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to GSU3182 of G.sulfurreducens of 42%25 (tremblnew|AAR36573(SRS)). No domains predicted. No TMHs. No signal peptide.	gene	gene3942	http://www.ncbi.nlm.nih.gov/gene/?term=azo3881
azo3882	azo3882		azo3882	4255546	4255974	+	hypothetical protein	Hypothetical protein%2C 40%25 similarity to TrEMBL: O86588. No domains%2C repeats%2C motifs or features predicted present.%3B~Function unclear	gene	gene3943	http://www.ncbi.nlm.nih.gov/gene/?term=azo3882
azo3883	azo3883		azo3883	4255979	4257190	+	Hypothetical protein	Hypothetical protein%2C35%25 identity(53%25 similarity) to TrEMBL%3BQ9I731. Very Poor homology with hits in the database over the entire length of protein! No Signal peptide or TMH reported Present.%3B~Family membership	gene	gene3944	http://www.ncbi.nlm.nih.gov/gene/?term=azo3883
azo3884	azo3884		azo3884	4257210	4259045	+	hypothetical regulatory protein	Hypothetical regulatory protein%2C%3B~Conserved hypothetical protein	gene	gene3945	http://www.ncbi.nlm.nih.gov/gene/?term=azo3884
azo3885	azo3885		azo3885	4259097	4259867	+	putative phosphoprotein phosphatase	Putative phosphoprotein phosphatase%2C%3B~Conserved hypothetical protein	gene	gene3946	http://www.ncbi.nlm.nih.gov/gene/?term=azo3885
azo3886	azo3886		azo3886	4259941	4260594	+	hypothetical secreted protein	Hypothetical secreted protein. Homology to cv1891 of C. violaceum of 27%25 (TrEMBL:Q7NWT8). no domains predicted. signal peptide. no TMHs	gene	gene3947	http://www.ncbi.nlm.nih.gov/gene/?term=azo3886
azo3887	azo3887		azo3887	4260635	4261894	+	hypothetical secreted protein	Hypothetical secreted protein. no Homology of the entiere protein to the data bank. no domains predicted. singal peptide. no TMHs	gene	gene3948	http://www.ncbi.nlm.nih.gov/gene/?term=azo3887
azo3888	azo3888		azo3888	4261940	4263946	-	putative serine/threonine kinase	Serine/threonine-protein kinase pknA (EC 2.7.11.1). Probably required for both normal cellular growth and differentiation. Inactivation of pknA leads to colonies that appear light green and rough in the absence of combined nitrogen. Pfam: Protein kinase domain%3B~Family membership	gene	gene3949	http://www.ncbi.nlm.nih.gov/gene/?term=azo3888
azo3889	azo3889		azo3889	4264005	4264706	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to PA0076 of P.aeruginosa of 38%25 (trembl:Q9I756). No domains predicted. No TMHs. No signal peptide.	gene	gene3950	http://www.ncbi.nlm.nih.gov/gene/?term=azo3889
azo3890	azo3890	imcF	imcF	4264709	4268281	-	conserved hypothetical ImcF-related protein	Conserved hypothetical ImcF-related protein. Homology to BPP0730 of Bordetella parapertussis of 45%25 (gnl|keqq|bpa:BPP0730(KEGG)). Has Signal Peptide. TMHMM2 reporting 2 TMH's present. Coils2 Program reporting presence of Coiled-Coil. Has PF06761%2C ImcF-related%3BIPR009612%3B This family represents a conserved region within several bacterial proteins that resemble ImcF%2C which has been proposed to be involved in Vibrio cholerae cell surface reorganisation%2C resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many family members are hypothetical proteins. Has PF06744%2C Protein of unknown function (DUF1215)%3BIPR010623%3B This family represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein%2C which has been proposed to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.%3B~Conserved hypothetical protein	gene	gene3951	http://www.ncbi.nlm.nih.gov/gene/?term=azo3890
azo3891	azo3891	ompA2	ompA2	4268313	4269617	-	putative outer membrane protein	Putative outer membrane protein%2C OmpA family%2C36%25 identity(51%25similarity) to TrEMBL%3BQ93IS0.TrEMBL%3BQ7AXY6(36%25 identity) TMHMM2 reporting presence of 1 TMH's. Has PF00691%2C OmpA family%3BIPR006665%2C OmpA/MotB:Most of the bacterial outer membrane proteins in this group are porin-like integral membrane proteins (such as ompA) MEDLINE:%2Cbut some are small lipid-anchored proteins.It is also found in MotB and related proteins. They are present in the outer membrane of many Gram-negative organisms.%3B~Conserved hypothetical protein	gene	gene3952	http://www.ncbi.nlm.nih.gov/gene/?term=azo3891
azo3892	azo3892	impJ	impJ	4269682	4271016	-	conserved hypothetical protein	Conserved hypothetical protein%2C40%25 Identity (57%25 similarity)to TrEMBL%3BQ93EC4 Has PF05936%2C Bacterial protein of unknown function (DUF876)%3BIPR010263%3BThis family consists of a series of hypothetical bacterial sequences of unknown function.	gene	gene3953	http://www.ncbi.nlm.nih.gov/gene/?term=azo3892
azo3893	azo3893		azo3893	4271065	4271583	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to PA1666 of P.aeruginosa of 37%25 (trembl|Q9I359(SRS)). Signal peptide present. No TMH or any other domains/features reported present.%3B~Conserved hypothetical protein	gene	gene3954	http://www.ncbi.nlm.nih.gov/gene/?term=azo3893
azo3894	azo3894	sciA	sciA	4271852	4272913	+	putative cytoplasmic protein	Putative cytoplasmic protein%2CsciA. TrEMBL%3BQ83SK5 %2CQ7AXZ5 Has PF06812%2C ImpA-related N-terminal%3BIPR010657%2CImpA_N%3BThis family represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein%2C which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans. Note that many family members are hypothetical proteins.%3B~Conserved hypothetical protein	gene	gene3955	http://www.ncbi.nlm.nih.gov/gene/?term=azo3894
azo3895	azo3895	sciH	sciH	4272962	4273471	+	putative cytoplasmic protein%2CSciH	Putative cytoplasmic protein%2CsciH%2C 71%25 identity(87%25 similarity) to TrEMBL%3BQ7AXZ1. Has PF05591%2C Protein of unknown function (DUF770)%3BIPR008312%2CUCP028301%3BThis family consists of several proteins of unknown function from various bacterial species. These proteins are encoded in pathogenic and symbiotic bacteria as part of an operon (part of the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion.These proteins are SciH/ImpB.%3B~High confidence in function and specificity	gene	gene3956	http://www.ncbi.nlm.nih.gov/gene/?term=azo3895
azo3896	azo3896	sciI	sciI	4273523	4275019	+	putative cytoplasmic protein%2C sciI	Putative cytoplasmic protein%2C sciI%2C 68%25 identity(80%25 similarity) to TrEMBL%3BQ93IS7. Has PF05943%2CProtein of unknown function (DUF877)%3BIPR010269%3BThis family consists of a number of uncharacterised bacterial proteins. The function of this family is unknown.%3B~High confidence in function and specificity	gene	gene3957	http://www.ncbi.nlm.nih.gov/gene/?term=azo3896
azo3897	azo3897	sciM	sciM	4275148	4275636	+	putative cytoplasmic protein%2CsciM	Putative cytoplasmic protein%2CsciM %2C 33%25 identity(50%25 similarity) to TrEMBL%3BQ7AXY8. Has PF05638%2CProtein of unknown function (DUF796)%3BIPR008514%3BThis family consists of several bacterial proteins of unknown function.%3B~High confidence in function and specificity	gene	gene3958	http://www.ncbi.nlm.nih.gov/gene/?term=azo3897
azo3898	azo3898	sciK	sciK	4275831	4276337	+	putative cytoplasmic protein%2CsciK	Putative cytoplasmic protein%2CsciK%2C 33%25 identity to TrEMBL%3BQ7AXZ0. Has PF05638%2C Protein of unknown function (DUF796)%3BThis family consists of several bacterial proteins of unknown function. Signal Peptide or TMH absent.%3B~Conserved hypothetical protein	gene	gene3959	http://www.ncbi.nlm.nih.gov/gene/?term=azo3898
azo3899	azo3899	sciE	sciE	4276353	4277174	+	putative cytoplasmic protein%2CsciE	Putative cytoplasmic protein%2CsciE%2C 37%25 identity(52%25 similarity) to TrEMBL%3BQ93IT1. Has PF07024%2C ImpE protein%3BThis family consists of several bacterial proteins including ImpE (Q93EC9) from Rhizobium leguminosarum. It has been suggested that the imp locus is involved in the secretion to the environment of proteins%2C including periplasmic RbsB protein%2C that cause blocking of infection specifically in pea plants.The exact function of this family is unknown.%3B~High confidence in function and specificity	gene	gene3960	http://www.ncbi.nlm.nih.gov/gene/?term=azo3899
azo3900	azo3900	sciD	sciD	4277167	4277676	+	putative cytoplasmic protein%2C sciD	Putative cytoplasmic protein%2C sciD%2C34%25 identity (50%25 similarity) to TrEMBL%3B Q7AXZ4. Has PF07025%2C Protein of unknown function (DUF1316)%3BIPR010745%3BThis family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.%3B~Conserved hypothetical protein	gene	gene3961	http://www.ncbi.nlm.nih.gov/gene/?term=azo3900
azo3901	azo3901	sciC	sciC	4277775	4279646	+	putative cytoplasmic protein%2C sciC	Putative cytoplasmic protein%2C sciC%2C 42%25 identity (57%25 similarity) to TrEMBL%3B Q93IT3. Has PF05947%2C Bacterial protein of unknown function (DUF879)%3BIPR010272 %3B This family consists of several hypothetical bacterial proteins of unknown function.%3B~Function unclear	gene	gene3962	http://www.ncbi.nlm.nih.gov/gene/?term=azo3901
azo3902	azo3902	sciB	sciB	4279622	4280665	+	putative cytoplasmic protein%2C sciB.	Putative cytoplasmic protein%2C sciB. TrEMBl%3BQ93IT4(36%25 identity) Has PF06996%3BProtein of unknown function (DUF1305)%3BIPR010732 %3BThis family consists of several hypothetical bacterial proteins of around 300 residues in length. The function of this family is unknown although one member (Q93IT4) from Salmonella enterica is thought to be involved in virulence.%3B~Conserved hypothetical protein	gene	gene3963	http://www.ncbi.nlm.nih.gov/gene/?term=azo3902
azo3903	azo3903	clpB2	clpB2	4280714	4283434	+	putative ATP-dependent Clp protease%2C ATP-binding subunit ClpB	Putative ATP-dependent Clp protease%2C ATP-binding subunit ClpB. Homology to clpB of E. coli of 38%25 (sprot|CLPB_ECOLI). The protein is thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates. Pfam: ATPsae family associated with various cellular activites no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3964	http://www.ncbi.nlm.nih.gov/gene/?term=azo3903
azo3904	azo3904		azo3904	4283535	4283924	+	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank no domains predicted no signal peptide no TMHs	gene	gene3965	http://www.ncbi.nlm.nih.gov/gene/?term=azo3904
azo3905	azo3905		azo3905	4283936	4285093	+	putative lipase family protein	Entry name:- TREMBL:Q7MFV5 Identities %3D 112/345 (32%25)%2C InterPro:- IPR002921%3B Lipase_3. Pfam:- PF01764%3B Lipase_3%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.074 Number of predicted TMHs: 0%3B~Family membership	gene	gene3966	http://www.ncbi.nlm.nih.gov/gene/?term=azo3905
azo3906	azo3906		azo3906	4285131	4286267	+	hypothetical protein	Hypothetical protein. No homology over the entire length with the data base. Pfam: Phosphatidylinositol-specific phospholipase C%2C X domain. Interpro: Phosphatidylinositol-specific phospholipase C%2C X region (IPR000909). No TMHs. No signal peptide.	gene	gene3967	http://www.ncbi.nlm.nih.gov/gene/?term=azo3906
azo3907	azo3907		azo3907	4286286	4287635	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to xac4125 of X. axonopodis of 42%25 (trembl|Q8PF60). Domain structure: 5 x TRP%2C 50 aa - 83 aa%3B 84 aa - 117 aa%3B 118 aa - 151 aa%3B 152 aa - 182 aa%3B 186 aa - 219 aa. InterPro: TPR repeat (IPR001440)%3B SAM (and some other nucleotide) binding motif (IPR000051). Pfam: TPR daomian. no signal peptide. no TMHs	gene	gene3968	http://www.ncbi.nlm.nih.gov/gene/?term=azo3907
azo3908	azo3908		azo3908	4287636	4289066	-	putative serine/threonine protein kinase	PutativeSerine/threonine-protein kinase (EC 2.7.11.1) (NimA-related protein kinase 4) (Serine/threonine protein kinase 2). Seems to act exclusively upon threonine residues. Pfam: Protein kinase domain%3B~Family membership	gene	gene3969	http://www.ncbi.nlm.nih.gov/gene/?term=azo3908
azo3909	azo3909	mnsA	mnsA	4289077	4289949	-	probable sensor protein	Probable sensor protein%2C%3B~High confidence in function and specificity	gene	gene3970	http://www.ncbi.nlm.nih.gov/gene/?term=azo3909
azo3910	azo3910		azo3910	4290002	4290928	-	hypothetical secreted protein	Hypothetical secreted protein no homology of the entire protein to the data bank no domains predicted signal peptide no TMHs	gene	gene3971	http://www.ncbi.nlm.nih.gov/gene/?term=azo3910
azo3911	azo3911	fabF2	fabF2	4291053	4292258	+	3-oxoacyl-[acyl-carrier-protein] synthase	CATALYZES THE CONDENSATION REACTION OF FATTY ACID SYNTHESIS BY THE ADDITION TO AN ACYL ACCEPTOR OF TWO CARBONS FROM MALONYL-ACP. HAS A PREFERENCE FOR SHORT CHAIN ACID SUBSTRATES AND MAY FUNCTION TO SUPPLY THE OCTANOIC SUBSTRATES FOR LIPOIC ACID BIOSYNTHESIS (BY SIMILARITY)%2CTREMBL:Q8P3S1 (45%25 identity)%3B TREMBL:Q87CD9 (41%25 identity). InterPro (IPR000794): Beta-ketoacyl synthase. Pfam (PF02801): Beta-ketoacyl synthase%2C C-terminal domain. Pfam (PF00109): Beta-ketoacyl synthase%2C N-terminal domain. Signal P reporting signal peptide.%3B~High confidence in function and specificity	gene	gene3972	http://www.ncbi.nlm.nih.gov/gene/?term=azo3911
azo3912	azo3912		azo3912	4292263	4293090	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to RSc0426 of R.solanacearum of 51%25 (trembl:Q8Y2B0). No domains predicted. No signal peptide. No TMHs.	gene	gene3973	http://www.ncbi.nlm.nih.gov/gene/?term=azo3912
azo3913	azo3913		azo3913	4293087	4293596	+	conserved hypothetical protein	Entry name:- TREMBL:Q8Y2B1 Prim. accession # Q8Y2B1 Identities %3D 64/116 (55%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0	gene	gene3974	http://www.ncbi.nlm.nih.gov/gene/?term=azo3913
azo3914	azo3914	fabG2	fabG2	4293607	4294332	+	3-oxoacyl-[acyl-carrier protein] reductase	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8PF93 (52%25 identity)%3B TREMBL:Q8Y2A1 (53%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~High confidence in function and specificity	gene	gene3975	http://www.ncbi.nlm.nih.gov/gene/?term=azo3914
azo3915	azo3915		azo3915	4294332	4295636	+	putative Na/H(+) antiporter	23%25 K_eff.IPR006153%3B Na_H_porter. Pfam:PF00999%3B Na_H_Exchanger%3B 1. TIGRFAMs:TIGR00932%3B 2a37%3B 1. TMHelix: 11.%3B~High confidence in function and specificity	gene	gene3976	http://www.ncbi.nlm.nih.gov/gene/?term=azo3915
azo3916	azo3916	argC	argC	4295751	4296674	+	N-acetyl-gamma-glutamyl-phosphate reductase	N-acetyl-gamma-glutamyl-phosphate reductase%2C%3B~High confidence in function and specificity	gene	gene3977	http://www.ncbi.nlm.nih.gov/gene/?term=azo3916
azo3917	azo3917		azo3917	4296699	4297466	-	glycosyltransferase	Specificity unclear	gene	gene3978	http://www.ncbi.nlm.nih.gov/gene/?term=azo3917
azo3918	azo3918		azo3918	4297495	4298283	-	putative phospholipid biosynthesis acyltransferase	Putative phospholipid biosynthesis acyltransferase%2C30%25 Identity to TrEMBL%3BQ8FJ00.Q8X6N6 Has Signal Peptide. Has SMART%3BSM00563%2C PlsC%2C Phosphate acyltransferases%3BFunction in phospholipid biosynthesis and have either glycerolphosphate%2C 1-acylglycerolphosphate%2C or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin%2C the product of the gene mutated in patients with Barth syndrome%2C is a member of this family.	gene	gene3979	http://www.ncbi.nlm.nih.gov/gene/?term=azo3918
azo3919	azo3919	mipA	mipA	4298304	4299155	-	MltA-interacting protein precursor	MltA-interacting protein precursor. MAY SERVE AS A SCAFFOLD PROTEIN REQUIRED FOR THE FORMATION OF A COMPLEX WITH MRCB/PONB AND MLTA THIS COMPLEX COULD PLAY A ROLE IN ENLARGEMENT AND SEPTATION OF THE MUREIN SACCULUS.%3B~High confidence in function and specificity	gene	gene3980	http://www.ncbi.nlm.nih.gov/gene/?term=azo3919
azo3920	azo3920		azo3920	4299152	4300162	-	Conserved Hypothetical protein	Conserved Hypothetical protein%2C Most Hits in the data base suggest to Pteridine-dependent deoxygenase like protein%2CTrEMBL%3BQ8P3Q5. Has PF01042 Endoribonuclease L-PSP%2C(IPR006175:Endoribon_LPSP)%3BThis domain is found in endoribonuclease%2C that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA. Previously it was thought to inhibit protein synthesis initiation.This endoribonuclease may also be involved in the regulation of purine biosynthesis . No Signal peptide or TMH present!%3B~Family membership	gene	gene3981	http://www.ncbi.nlm.nih.gov/gene/?term=azo3920
azo3921	azo3921		azo3921	4300159	4301538	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to xcc4013 of X. campestris of 46%25 (trembl|Q8P3Q6). InterPro: Monooxygenases FAD binding domain (IPR002938)%3B NAD binding site (IPR000205) Pfam: FAD binding domain%3B Monooxygenase FAD binding domain. no signal peptide. no TMHs	gene	gene3982	http://www.ncbi.nlm.nih.gov/gene/?term=azo3921
azo3922	azo3922		azo3922	4301535	4302155	-	conserved hypothetical secreted protein	Conserved hypothetical secred protein. Homology to xac4267 of X. axonopodis of 41%25 (trembl|Q8PES3). no domains predicted .signal peptide. no TMHs%3B~Conserved hypothetical protein	gene	gene3983	http://www.ncbi.nlm.nih.gov/gene/?term=azo3922
azo3923	azo3923	lrp2	lrp2	4302273	4302821	-	leucine-responsive regulatory protein	Probable leucine-responsive regulatory protein. Mediates a global response to leucine. Exogenous leucine affects the expression of a number of different opreons%3B Lrp mediates this effect for at least some of these operons. For example it is regulator of the branched-chain amino acid transport genes. Similar to SWISSPROT: sprot|LRP_ECOLI (49%25 Escherichia coli%2C leucine-responsive regulatory protein Lrp) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity	gene	gene3984	http://www.ncbi.nlm.nih.gov/gene/?term=azo3923
azo3924	azo3924	dadA2	dadA2	4302926	4304239	+	D-amino acid dehydrogenase small subunit	The L-alanine catabolic pathway proceeds in two steps: racemization of the L-isomer to D-alanine by alanine racemase and oxidative deamination of D-alanine to pyruvate and ammonia by D- amino acid dehydrogenase. Similar to sprot|DADA_BORBR (68%25) and to sprot|DAD1_PSEAE (61%25). ProSite (PS50205): NAD binding site ProSite (PF01266): D-amino acid oxidase%3B~Specificity unclear	gene	gene3985	http://www.ncbi.nlm.nih.gov/gene/?term=azo3924
azo3925	azo3925	alr	alr	4304301	4305362	+	alanine racemase	Alanine racemase catabolic (EC 5.1.1.1). Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by dadA (By similarity). alr: alanine racemase%3B~High confidence in function and specificity	gene	gene3986	http://www.ncbi.nlm.nih.gov/gene/?term=azo3925
azo3926	azo3926		azo3926	4305381	4305590	-	conserved hypothetical protein	conserved hypothetical protein. Homology to Daro03003529 of Dechloromonas aromatica of 39%25 (gi|41722979|ref|ZP_00149945.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMH	gene	gene3987	http://www.ncbi.nlm.nih.gov/gene/?term=azo3926
azo3927	azo3927	cycH	cycH	4305599	4306858	-	conserved hypothetical cytochrome c-type biogenesis protein CycH	Conserved hyppthetical cytochrome c-type biogenesis protein CycH. Homology to cycH of Azoarcus sp. EbN1 of 50%25 (gnl|keqq|eba:ebA3526(KEGG)). REQUIRED FOR THE BIOGENESIS OF C-TYPE CYTOCHROMES. POSSIBLE SUBUNIT OF A HEME LYASE (BY SIMILARITY). signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene3988	http://www.ncbi.nlm.nih.gov/gene/?term=azo3927
azo3928	azo3928	cycL	cycL	4306855	4307364	-	probable cytochrome C-type biogenesis protein CycL	Probable Cytochrome c-type biogenesis protein cycL. Homology to cycL of S. meliloti of 44%25 (sprot|CCMH_RHIME). REQUIRED FOR THE BIOGENESIS OF C-TYPE CYTOCHROMES. POSSIBLE SUBUNIT OF A HEME LYASE. signal peptide probable 2 TMHs%3B~Family membership	gene	gene3989	http://www.ncbi.nlm.nih.gov/gene/?term=azo3928
azo3929	azo3929	ccmG	ccmG	4307381	4307974	-	protein disulfide-isomerase	Probable thiol disulfide interchange protein. Involved in disulfide bond formation. Catalyzes a late reductive step in the assembly of periplasmic c-type cytochromes probably the reduction of disulfide bonds of the apocytochrome c to allow covalent linkage with the heme. Possible subunit of a heme lyase (By similarity). InterPro: Periplasmic protein thiol:disulfide oxidoreductase DsbE (IPR004799) Interpro: Thioredoxin (IPR006662) Tigrfam: dsbE: periplasmic protein thiol:disulfide axidoreductase%2C DsbE superfamily signal peptide Probable 1 TMH%3B~Family membership	gene	gene3990	http://www.ncbi.nlm.nih.gov/gene/?term=azo3929
azo3930	azo3930	ccmF	ccmF	4307994	4309970	-	cytochrome c-type biogenesis protein CcmF	Cytochrome c-type biogenesis protein ccmF. Homology to ccmF of E. coli of 63%25 (sprot|CCMF_ECOLI). REQUIRED FOR THE BIOGENESIS OF C-TYPE CYTOCHROMES. POSSIBLE SUBUNIT OF A HEME LYASE. Tigrfam: nerF: cytochrome c-type biogenesis protein ccmF Pfam: Cytochrome C assembly protein probably signal peptide probably 15 THMs%3B~High confidence in function and specificity	gene	gene3991	http://www.ncbi.nlm.nih.gov/gene/?term=azo3930
azo3931	azo3931	ccmE	ccmE	4309967	4310413	-	probable cytochrome C-type biogenesis protein CcmE	Cytochrome c-type biogenesis protein CcmE. Homology to ccmE of E. coli of 45%25 (sprot|CCME_ECOLI). REQUIRED FOR THE BIOGENESIS OF C-TYPE CYTOCHROMES. POSSIBLE SUBUNIT OF A HEME LYASE (BY SIMILARITY). InterPro: CcmE/CycJ proteins (IPR004329) Pfam: CcmE signal peptide probable 1TMH%3B~High confidence in function and specificity	gene	gene3992	http://www.ncbi.nlm.nih.gov/gene/?term=azo3931
azo3932	azo3932	ccmD	ccmD	4310410	4310631	-	conserved hypothetical heme exporter protein D	Conserved hypothetical heme exporter protein D. Homology to ccmD of Azoarcus EBN1 of 49%25 (trembl:Q5P3K7). Pfam: Heme exporter protein D . The CcmD protein is part of a C-type cytochrome biogenesis operon. The exact function of this protein is uncertain. It has been proposed that CcmC%2C CcmD and CcmE interact directly with each other%2C establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation. This protein is found fused to CcmE in P52224. These proteins contain a predicted transmembrane helix. No signal peptide. 1 TMHs%3B~Conserved hypothetical protein	gene	gene3993	http://www.ncbi.nlm.nih.gov/gene/?term=azo3932
azo3933	azo3933	ccmC	ccmC	4310631	4311407	-	probable heme exporter protein C	Probable heme exporter protein C (Cytochrome c-type biogenesis protein ccmC). Homology to ccmC of E. coli of 43%25 (sprot|CCMC_ECOLI). Required for the export of heme to the periplasm for the biogenesis of C-type cytochromes. Pfam: Cytrochrome C assembly protein no signal peptide probable 6 TMHs%3B~High confidence in function and specificity	gene	gene3994	http://www.ncbi.nlm.nih.gov/gene/?term=azo3933
azo3934	azo3934		azo3934	4311404	4311499	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs	gene	gene3995	http://www.ncbi.nlm.nih.gov/gene/?term=azo3934
azo3935	azo3935	ccmB	ccmB	4311496	4312164	-	probable heme exporter protein B	Probable heme exporter protein B (Cytochrome c-type biogenesis protein ccmB). Homology to ccmB (sprot|CCMB_ECOLI) of E. coli of 49%25. Required for the export of heme to the periplasm for the biogenesis of C-type cytochromes (By similarity). no signal peptide probable 6 TMHs%3B~High confidence in function and specificity	gene	gene3996	http://www.ncbi.nlm.nih.gov/gene/?term=azo3935
azo3936	azo3936	ccmA	ccmA	4312158	4312784	-	probable heme exporter protein A	Probable heme exporter protein A (Cytochrome c-type biogenesis ATP-binding protein ccmA). Homology to ccmA (CCMA_ECOLI) of E. coli of 47%25. Required for the export of heme to the periplasm for the biogenesis of C-type cytochromes (By similarity). InterPro: AAA ATPase superfamily (IPR003593)%2C ABC-Transporter (IPR003439)%2CATP/GTP-binding motif A (IPR001687) Pfam: ABC transporter no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene3997	http://www.ncbi.nlm.nih.gov/gene/?term=azo3936
azo3937	azo3937		azo3937	4313372	4315009	+	putative aerotaxis receptor	Putative aerotaxis receptor%2C sensory_box TMHMM reporting 2 transmembrane helices. HTH reporting nucleic acid binding motif. Aerotaxis receptor. SIGNAL TRANSDUCER FOR AEROTAXIS. THE AEROTACTIC RESPONSES IS THE ACCUMULATION OF CELLS AROUND AIR BUBBLES. THE NATURE OF THE SENSORY STIMULUS DETECTED BY THIS PROTEIN IS THE PROTON MOTIVE FORCE OR CELLULAR REDOX STATE. IT USES A FAD PROSTHETIC GROUP AS A REDOX SENSOR TO MONITOR OXYGEN LEVELS.%3B~Specificity unclear	gene	gene3998	http://www.ncbi.nlm.nih.gov/gene/?term=azo3937
azo3938	azo3938	napC2	napC2	4315202	4315840	-	probable cytochrome c-type protein NapC	Probable cytochrome c-type protein NapC. Homology to napC of R. sphaeroides of 57%25 (sprot|NAPC_RHOSH). MEDIATES ELECTRON FLOW FROM QUINONES TO THE NAPAB COMPLEX. no signal peptide probable 1 TMHs%3B~High confidence in function and specificity	gene	gene3999	http://www.ncbi.nlm.nih.gov/gene/?term=azo3938
azo3939	azo3939	napB2	napB2	4315856	4316308	-	probable diheme cytochrome c	Probable diheme cytochrome c. Homology to napB of A. eutrophus of 47%25 (sprot|NAPB_ALCEU). SMALL SUBUNIT OF THE PERIPLASMIC NITRATE REDUCTASE (NAP). ONLY EXPRESSED AT HIGH LEVELS DURING AEROBIC GROWTH. NAPAB COMPLEX RECEIVES ELECTRONS FROM THE MEMBRANE-ANCHORED TETRAHEME NAPC PROTEIN THUS ALLOWING ELECTRON FLOW BETWEEN MEMBRANE AND PERIPLASM. ESSENTIAL FUNCTION FOR NITRATE ASSIMILATION AND MAY HAVE A ROLE IN ANAEROBIC METABOLISM. signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene4000	http://www.ncbi.nlm.nih.gov/gene/?term=azo3939
azo3940	azo3940	napH	napH	4316305	4317300	-	probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein	Probabe iron-sulfur 4Fe-4s ferredoxin transmembrane protein. Homology to napH of E. coli of 43%25 (sprot|NAPH_ECOLI) Involved in a membrane generated redox potential. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding domain no signal peptide 4 TMHs%3B~High confidence in function and specificity	gene	gene4001	http://www.ncbi.nlm.nih.gov/gene/?term=azo3940
azo3941	azo3941	napG	napG	4317297	4318157	-	probable ferredoxin-type protein NapG	Probable ferredoxin-type protein napG. Homology to napG of E. coli of 57%25 (sprot|NAPG_ECOLI). Involved in electron transfer in a wide variety of metabolic reactions. InterPro: MauM/NapG family ferredoxin-type protein (IPR004494)%3B 7 Fe ferredoxin (IPR000813)%3B 4Fe-4S ferredoxin%3B iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding domain Tigrfam: mauM_napG: MauM/NapG family ferredoxin-type protein no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene4002	http://www.ncbi.nlm.nih.gov/gene/?term=azo3941
azo3942	azo3942	napA2	napA2	4318452	4320995	-	probable nitrate reductase	Probable nitrate reductase. Homology to napa of A. eutrophus of 68%25 (CAA50507). ONLY EXPRESSED AT HIGH LEVELS DURING AEROBIC GROWTH. NAPAB COMPLEX RECEIVES ELECTRONS FROM THE MEMBRANE-ANCHORED TETRAHEME NAPC PROTEIN THUS ALLOWING ELECTRON FLOW BETWEEN MEMBRANE AND PERIPLASM. ESSENTIAL FUNCTION FOR NITRATE ASSIMILATION AND MAY HAVE A ROLE IN ANAEROBIC METABOLISM. Interpro: Prokaryotic molybdopterin oxidoreductase (IPR006655) Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene4003	http://www.ncbi.nlm.nih.gov/gene/?term=azo3942
azo3943	azo3943	napD2	napD2	4320997	4321251	-	probable NapD protein	Probable NapD protein%2C 38%25 Identity to TrEMBL%3BQ6LTW0%2C Has PF03927%2C NapD protein%3BIPR005623%3BUncharacterized protein involved in formation of periplasmic nitrate reductase.%3B~Family membership	gene	gene4004	http://www.ncbi.nlm.nih.gov/gene/?term=azo3943
azo3944	azo3944	napF	napF	4321248	4321751	-	probable ferredoxin-type protein NapF	Probabel ferredoxin-type protein napF. Homology to napF of E. coli of 43%25 (sprot|NAPF_ECOLI). Involved in electron transfer ina a wide variety of metabolic reactions. InterPro: Ferredoxin-type protein NapF (IPR004496)%3B 4Fe-4S ferredoxin%2C iron-sulfur binding domain (IPR001450) Tigrfam: napF: ferredoxin-type protein NapF Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene4005	http://www.ncbi.nlm.nih.gov/gene/?term=azo3944
azo3945	azo3945		azo3945	4321945	4325139	-	putative hybrid sensor and regulator protein	Putative hybrid sensor and regulator protein%2C%3B~Specificity unclear	gene	gene4006	http://www.ncbi.nlm.nih.gov/gene/?term=azo3945
azo3946	azo3946		azo3946	4325235	4325588	+	putative two component transcriptional regulator	Putative transcriptional regulator%2C%3B~Function unclear	gene	gene4007	http://www.ncbi.nlm.nih.gov/gene/?term=azo3946
azo3947	azo3947		azo3947	4325551	4328109	-	putative two component sensor protein	Putative two component sensor protein%2C%3B~Function unclear	gene	gene4008	http://www.ncbi.nlm.nih.gov/gene/?term=azo3947
azo3948	azo3948		azo3948	4328357	4329781	-	putative DNA-directed polymerase III	Excinuclease cho (EC 3.1.25.-) (Endonuclease cho) (UvrC homolog protein). Incises the DNA at the 3 side of a lesion during nucleotide excision repair. Incises the DNA farther away from the lesion than uvrC. Not able to incise the 5 site of a lesion. When a lesion remains because uvrC is not able to induce the 3 incision cho incises the DNA. Then uvrC makes the 5 incision. The combined action of cho and uvrC broadens the substrate range of nucleotide excision repair (By similarity).%3B~Specificity unclear	gene	gene4009	http://www.ncbi.nlm.nih.gov/gene/?term=azo3948
azo3949	azo3949	ubiE2	ubiE2	4329784	4330548	-	ubiquinone/menaquinone biosynthesis methyltransferase	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-). Methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-14-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-14-benzoquinol (DMQH2) (By similarity). InterPro: ubiE/COQ5 methyltransferase rrmJ: ribosomal RNA large subunit methy%3B~High confidence in function and specificity	gene	gene4010	http://www.ncbi.nlm.nih.gov/gene/?term=azo3949
azo3950	azo3950		azo3950	4330672	4330863	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to RS02765 of R.solanacearum of 43%25 (trembl:Q8XWT5). No domains predicted. No TMHs. No signal peptide.	gene	gene4011	http://www.ncbi.nlm.nih.gov/gene/?term=azo3950
azo3951	azo3951	spoT	spoT	4330962	4333160	-	guanosine-3'%2C5'-bis(diphosphate) 3'-diphosphatase	Guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase%2C%3B~High confidence in function and specificity	gene	gene4012	http://www.ncbi.nlm.nih.gov/gene/?term=azo3951
azo3952	azo3952	rpoZ	rpoZ	4333183	4333398	-	DNA-directed RNA polymerase	DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (Transcriptase omega chain) (RNA polymerase omega subunit). Promotes RNA polymerase assembly. Latches the N-and C-terminal regions of the beta subunit thereby facilitating its interaction with the beta and alpha subunits. Similar to SWISSPROT: sprot|RPOZ_ECOLI (45%25 Escherichia coli%2C RpoZ) / sprot|RPOZ_RALSO (67%25 Ralstonia solanacearum (Pseudomonas solanacearum)%2C RpoZ or rsc2154) InterPro: IPR003716 RNA_pol_omega. TIGRFAM: TIGR00690 DNA-directed RNA polymerase%2C omega subunit.%3B~High confidence in function and specificity	gene	gene4013	http://www.ncbi.nlm.nih.gov/gene/?term=azo3952
azo3953	azo3953	gmk	gmk	4333401	4334015	-	guanylate kinase	Guanylate kinase (Deoxyguanylate kinase) (GMP kinase) (Guanosine monophosphate kinase) InterPro: Guanylate kinase%3B~High confidence in function and specificity	gene	gene4014	http://www.ncbi.nlm.nih.gov/gene/?term=azo3953
azo3954	azo3954		azo3954	4334206	4334748	-	isochorismatase family protein	Similar to TREMBL:Q9HXG0 (60%25 identity)%3B TREMBL:Q7NRZ4 (45%25 identity)%3B TREMBL:Q88GB8 (43%25 identity). InterPro (IPR000868): Isochorismatase hydrolase. Pfam (PF00857): Isochorismatase family.%3B~Specificity unclear	gene	gene4015	http://www.ncbi.nlm.nih.gov/gene/?term=azo3954
azo3955	azo3955		azo3955	4335032	4335799	+	conserved hypothetical protein	Conserved hypothetical protein. Homology to Daro03000439 of Dechloromonas aromatica of 48%25 (gi|41725494|ref|ZP_00152252.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.	gene	gene4016	http://www.ncbi.nlm.nih.gov/gene/?term=azo3955
azo3956	azo3956		azo3956	4335858	4337279	+	conserved hypothetical protein	Conserved hypothetical protein%2C has weak homlogs in the Database. TrEMBL%3BQ88I83(25%25 Identity). gi|46140644|ref|ZP_00152253.2| %2C 30%25 Identity to Dechloromonas aromatica RCB%2CNucleotidyltransferase/DNA polymerase involved in DNA repair Has PF00817%2CimpB/mucB/samB family%3B IPR001126%2C UMUC_like%3B These proteins are involved in UV protection.In Escherichia coli%2C UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD%2C UmuC and RecA. This machinery allows the replication to continue through DNA lesion%2C and therefore avoid lethal interruption of DNA replication after DNA damage. The UmuC is a well conserved protein in prokaryotes%2C with a homologue in yeast.	gene	gene4017	http://www.ncbi.nlm.nih.gov/gene/?term=azo3956
azo3957	azo3957		azo3957	4337288	4340482	+	DNA polymerase III%2C alpha subunit%2C putative	Region start changed from 4336170 to 4337262 (-1092 bases)	gene	gene4018	http://www.ncbi.nlm.nih.gov/gene/?term=azo3957
azo3958	azo3958	pcaC	pcaC	4340498	4340884	-	4-carboxymuconolactone decarboxylase	Carboxymuconolactone decarboxylase family protein%2C65%25 Identity (78%25 similarity) to TrEMBL%3BQ8EKK9. Has PF02627%2C Carboxymuconolactone decarboxylase family%3B IPR003779%2C CMD: Carboxymuconolactone decarboxylase (CMD)is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins (e.g. O67982) CMD represents the C-terminal domain%2C Abhydrolase_1 represents the N-terminal domain.%3B~High confidence in function and specificity	gene	gene4019	http://www.ncbi.nlm.nih.gov/gene/?term=azo3958
azo3959	azo3959	cadR	cadR	4340829	4341284	-	putative MerR-family transcriptional regulator	Putative MerR-family transcriptional regulator%2C%3B~Family membership	gene	gene4020	http://www.ncbi.nlm.nih.gov/gene/?term=azo3959
azo3960	azo3960	yicC	yicC	4341451	4342317	-	putative alpha helix protein%2CyicC	Putative alpha helix protein%2CyicC.42%25 identity(57%25 Similarity) to SwissProt%3BP23839%2C TrEMBL%3BQ8XD97(42%25). TrEMBL%3B Q8XXF8(45%25 identity). Coils2 program reports the presence of Coiled-Coil. Has PF03755%2C YicC-like family%2C N-terminal region%3B IPR005229%2C Cons_hypoth255: Family of bacterial proteins. Although poorly characterised%2C the members of this protein family have been demonstrated to play a role in stationary phase survival. These proteins are not essential during stationary phase.%3B~Conserved hypothetical protein	gene	gene4021	http://www.ncbi.nlm.nih.gov/gene/?term=azo3960
azo3961	azo3961		azo3961	4342320	4343360	+	putative serine/threonine protein kinase	Putative serine/threonine protein kinase%2C%3B~Family membership	gene	gene4022	http://www.ncbi.nlm.nih.gov/gene/?term=azo3961
azo3962	azo3962		azo3962	4343372	4344292	+	putative phosphoprotein phosphatase	Putative phosphoprotein phosphatase%2C%3B~Conserved hypothetical protein	gene	gene4023	http://www.ncbi.nlm.nih.gov/gene/?term=azo3962
azo3963	azo3963	rph	rph	4344315	4345034	+	ribonuclease PH	Ribonuclease PH (EC 2.7.7.56) (tRNA nucleotidyltransferase). Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates.%3B~High confidence in function and specificity	gene	gene4024	http://www.ncbi.nlm.nih.gov/gene/?term=azo3963
azo3964	azo3964		azo3964	4345038	4345634	+	Conserved Hypothetical protein	Protein of Ham1 family%2C 76%25 Identity to TrEMBL%3B Q8G9C9%2C SProt%3BQ8XXF4(58%25) Has PF01725%2C Ham1 family%3B IPR002637%2C Ham1p_like%3B This family consists of the HAM1 protein P47119 and hypothetical archaeal bacterial and C. elegans proteins. HAM1 controls 6-N-hydroxylaminopurine (HAP) sensitivity and mutagenesis in S. cerevisiae P47119. The HAM1 protein protects the cell from HAP%2C either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions.	gene	gene4025	http://www.ncbi.nlm.nih.gov/gene/?term=azo3964
azo3965	azo3965		azo3965	4345631	4346854	+	coproporphyrinogen oxidase	Putative anaerobic coproporphyrinogen iii oxidase oxidoreductase protein. TIGRFAM: hemN_rel: oxygen-independent coproporphyrinogen III oxidase%2C putative%3B~Specificity unclear	gene	gene4026	http://www.ncbi.nlm.nih.gov/gene/?term=azo3965
azo3966	azo3966		azo3966	4346862	4347371	-	hypothetical protein predicted by Glimmer/Critica	Hypothetical protein predicted by Glimmer/Critica. No homology of the entire protein with the data bank. No domains predicted. No signal peptide. No TMHs	gene	gene4027	http://www.ncbi.nlm.nih.gov/gene/?term=azo3966
azo3967	azo3967		azo3967	4347471	4349312	-	putative protease IV	Putative protease IV. homology to sspA of E. coli of 38%25 (sprot|SPPA_ECOLI). Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane. InterPro: Signal peptide peptidase SppA 67K type (IPR004634)%3B Signal peptide peptidase SppA 36K type (IPR004635)%3B Pepditase family U7 (IPR002142) Pfam: Peptidase family U7 Tigrfam: SppA_67K: signal peptide peptidase SppA%3B sppA_dom: signal peptide peptidase SppA no signal peptide probable 1 TMH%3B~High confidence in function and specificity	gene	gene4028	http://www.ncbi.nlm.nih.gov/gene/?term=azo3967
azo3968	azo3968		azo3968	4349397	4350149	-	conserved hypothetical tRNA (guanine-N7-)-methyltransferase	Conserved hypothetical tRNA (guanine-N(7)-)-methyltransferase. Homology to Azaoracus sp of 80%25 (sprot|TRMB_AZOSE). Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (By similarity). InterPro: Putative methyltransferase (IPR003358)%3B conserved hypothetical protein 91 (IPR004395)%3B SAM (and some other nucleotide) binding motif (IPR000051) Pfam: Putative methyltransferase Tigrfam: TIGR00091: conserved hypothetical protein no signal peptide no TMHs%3B~Family membership	gene	gene4029	http://www.ncbi.nlm.nih.gov/gene/?term=azo3968
azo3969	azo3969		azo3969	4350146	4350931	-	thiamine biosynthesis protein	Thiazole biosynthesis protein%3B~High confidence in function and specificity	gene	gene4030	http://www.ncbi.nlm.nih.gov/gene/?term=azo3969
azo3970	azo3970	thiS	thiS	4350986	4351189	-	thiamine biosynthesis protein ThiS	Putative sulfur transfer protein involved in thimanin biosynsthesis.%3B~High confidence in function and specificity	gene	gene4031	http://www.ncbi.nlm.nih.gov/gene/?term=azo3970
azo3971	azo3971	metX	metX	4351391	4352518	+	probable homoserine O-acetyltransferase	Probable homoserine O-acetyltransferase. Homology to metX of L meyeri of 47%25 (SWISSPROT:METX_LEPME). Involved in methionine biosynthesis. catalytic activity: acetyl-coa + l-homoserine %3D coa + o-acetyl-l- homoserine. InterPro: Alpha/beta hydrolase fold (IPR000073) Pfam: alpha/beta hydrolase fold no signal peptide no TMHs%3B~High confidence in function and specificity	gene	gene4032	http://www.ncbi.nlm.nih.gov/gene/?term=azo3971
azo3972	azo3972	metW	metW	4352521	4353108	+	putative methionine biosynthesis protein	Q8YDE4:20%25 identity%2C 37%25 similarity. Ubiquinone/menaquinone biosynthesis methyltransferase ubiE . Methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-14-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-14-benzoquinol (DMQH2) (By similarity). METHIONINE BIOSYNTHESIS PROTEIN Pfam:PPTA(protein prenyl transferase alpha subunit)%2C FERM domain TIGRFAM:rmJ: ribosomal RNA large subunit methylation InterPro IPR000051%3B SAM_bind. IPR004034%3B Ubi/men_Metransf. IPR004033%3B UbiE/COQ5_Metrf. HTH predicted nucleic acid binding motif PROSITE PS01183%3B UBIE_1%3B 1. PS01184%3B UBIE_2%3B FALSE_NEG.%3B~Family membership	gene	gene4033	http://www.ncbi.nlm.nih.gov/gene/?term=azo3972
azo3973	azo3973		azo3973	4353124	4353927	-	hypothetical protein	Hypothetical protein. no homology of the entire protein to the data bank. Pfam: putative peptidoglycan binding domain. This domain%2C peptidoglycan binding domain 1%2C may have a general peptidoglycan binding function. It is composed of three alpha helices and is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. no signal peptide. no TMHs	gene	gene4034	http://www.ncbi.nlm.nih.gov/gene/?term=azo3973
azo3974	azo3974		azo3974	4354102	4354419	-	conserved hypothetical protein	Conserved hypothetical protein. Homology to bb4936 of B. bronchiseptica of 36%25 (trembl|Q7WDQ2). no domains predicted. no signal peptide. no TMHs	gene	gene4035	http://www.ncbi.nlm.nih.gov/gene/?term=azo3974
azo3975	azo3975	ampG	ampG	4354671	4356191	+	putative AmpG protein	AmpG protein. Probably acts as a permease in the beta-lactamase induction system and in peptidoglycan recycling.Belong to the BT1 family of proteins. Presence of DUF domains and signail peptide. 11 tranmembrane helices.36%25 identity and 50%25 similarity to E.coli AmpG protein.(JW0423) 2A0125: AmpG-related permease%3B~Family membership	gene	gene4036	http://www.ncbi.nlm.nih.gov/gene/?term=azo3975
azo3976	azo3976		azo3976	4356228	4356950	+	probable uracil-DNA glycosylase	Probable uracil-DNA glycosylase. Has PF03167%2CUracil DNA glycosylase superfamily%3BIPR005122 UDNA_glycsylseSF%3B Uracil-DNA glycosylase is a DNA repair enzyme that excises uracil residues from DNA by cleaving the N-glycosylic bond. Uracil in DNA can arise as a result of misincorportation of dUMP residues by DNA polymerase or deamination of cytosine. The sequence of uracil-DNA glycosylase is extremely well conserved	gene	gene4037	http://www.ncbi.nlm.nih.gov/gene/?term=azo3976
azo3977	azo3977		azo3977	4357121	4357792	+	putative carbonic anhydrase	Region start changed from 4356747 to 4357095 (-348 bases)	gene	gene4038	http://www.ncbi.nlm.nih.gov/gene/?term=azo3977
azo3978	azo3978	priA	priA	4358238	4360409	-	primosomal protein N' (Replication factor Y)	Primosomal protein N (Replication factor Y). Recognizes a specific hairpin sequence on phiX ssDNA. This structure is then recognized and bound by proteins priB and priC. Formation of the primosome proceeds with the subsequent actions of dnaB dnaC dnaT and primase. PriA then functions as a helicase within the primosome. InterPro: DEAD/DEAH box helicase%3B~High confidence in function and specificity	gene	gene4039	http://www.ncbi.nlm.nih.gov/gene/?term=azo3978
azo3979	azo3979	hemE	hemE	4360801	4361877	-	uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase (URO-D) (UPD). catalytic activity: uroporphyrinogen-iii %3D coproporphyrinogen + 4 co(2). pathway: porphyrin biosynthesis.%3B~High confidence in function and specificity	gene	gene4040	http://www.ncbi.nlm.nih.gov/gene/?term=azo3979
azo3980	azo3980	trkH2	trkH2	4361965	4363437	-	putative potassium system uptake protein	This proteins are involved in active potassium uptake utilising ATP in the process. TrkH a member of the family TRKH is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in E. coli.Requires TrkE for transport activity. 38%25 Cat_transpt.IPR004772%3B K_transptTrk. Pfam:PF02386%3B TrkH%3B 1. TIGRFAMs:TIGR00933%3B 2a38%3B 1. TMHelix:10. Signal peptide present.%3B~High confidence in function and specificity	gene	gene4041	http://www.ncbi.nlm.nih.gov/gene/?term=azo3980
azo3981	azo3981	trkA2	trkA2	4363437	4364840	-	putative potassium uptake protein TrkA	Potassium uptake protein TrkA. Part of the constitutive potassium transport systems trkG and trkH. May regulate the transport activity of trkG and trkH systems. Binds to NAD+ and NADH.Peripherally bound to the inner side of the inner membrane via the trkG and trkH proteins. 51%25 NAD_BS.IPR006036%3B TrkA_Kuptake.IPR003148%3B TrkA_N. IPR006037%3B TrkAC. Pfam:PF02080%3B TrkA-C%3B 2.PF02254%3B TrkA-N%3B 2.%3B~High confidence in function and specificity	gene	gene4042	http://www.ncbi.nlm.nih.gov/gene/?term=azo3981
azo3982	azo3982	ntrX	ntrX	4364923	4366170	-	probable nitrogen assimilation regulatory protein	Probable nitrogen assimilation regulatory protein%2C%3B~High confidence in function and specificity	gene	gene4043	http://www.ncbi.nlm.nih.gov/gene/?term=azo3982
azo3983	azo3983	ntrY	ntrY	4366174	4368294	-	probable nitrogen regulation protein	Probable nitrogen regulation protein%2C%3B~High confidence in function and specificity	gene	gene4044	http://www.ncbi.nlm.nih.gov/gene/?term=azo3983
azo3984	azo3984		azo3984	4368291	4368995	-	conserved hypothetical secreted protein	Conserved hypothetical secreted protein. Homology to RS02253 of R.solanacearum of 32%25 (trembl|Q8Y3A4(SRS)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein	gene	gene4045	http://www.ncbi.nlm.nih.gov/gene/?term=azo3984
azo3985	azo3985		azo3985	4368856	4370136	-	Sun protein	SUN protein%3B~Conserved hypothetical protein	gene	gene4046	http://www.ncbi.nlm.nih.gov/gene/?term=azo3985
azo3986	azo3986	speE2	speE2	4370229	4371083	-	probable spermidine synthase	Spermidine synthase counts to a group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes%3B spermidine synthase%2C spermine synthase and putrescine N-methyltransferase. Similar to sprot|SPEE_NITEU (39%25) and to sprot|SPE1_PSEAE (34%25). ProSite (PS50193): SAM (and some other nucleotide) binding motif Pfam (PF01564): Spermidine synthase TIGRFAM: speE%2Cspermidine synthase%3B~Specificity unclear	gene	gene4047	http://www.ncbi.nlm.nih.gov/gene/?term=azo3986
azo3987	azo3987		azo3987	4371199	4371963	-	conserved hypothetical membrane protein	Conserved hypothetical membrane protein. TREMBL:Q88FZ3: 44%25 identity%2C 60%25 similarity InterPro:IPR002781%3B DUF81.This domain is found in integral membrane proteins of prokaryotes which are uncharacterized Pfam:PF01925%3B DUF81 Signal peptide present and presence of 6 transmembrane helices.%3B~Conserved hypothetical protein	gene	gene4048	http://www.ncbi.nlm.nih.gov/gene/?term=azo3987
azo3988	azo3988	thdF	thdF	4372023	4373381	-	probable tRNA modification GTPase	tRNA modification GTPase Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine which is found in the wobble position of some tRNAs (By similarity). Thiophene and furan oxidation potentialities having ABC tzransporter function. Presence of signal peptide%2C DUF domains%2Cextracellular link domains and thiesterase domains. Similarity to Ras family of proteins. 52%25 identity and 63%25 similarity to Dechloromonas aromatica ThdF thdF: tRNA modification GTPase TrmE%3B~Family membership	gene	gene4049	http://www.ncbi.nlm.nih.gov/gene/?term=azo3988
azo3989	azo3989		azo3989	4373353	4374969	-	propable 60 Kd inner-membrane protein	Inner membrane protein oxaA. Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and independently of the Sec translocase complex (by similariety). Pfam: 60 kd inner membran proetin TMHs: 3 Signal peptide: no%3B~High confidence in function and specificity	gene	gene4050	http://www.ncbi.nlm.nih.gov/gene/?term=azo3989
azo3990	azo3990		azo3990	4375023	4375232	-	conserved hypothetical protein	Conserved hypothetical protein%2C 62%25 identical(76%25 similar) to SwissProt%3BQ7NPT7. Has PF01809%2C Domain of unknown function DUF37%3BIPR002696%3BThis domain is found in short (70 amino acid) hypothetical proteins from various bacteria. The domain contains three conserved cysteine residues. Q44066 from Aeromonas hydrophila has been found to have hemolytic activity (unpublished).	gene	gene4051	http://www.ncbi.nlm.nih.gov/gene/?term=azo3990
azo3991	azo3991		azo3991	4375229	4375591	-	ribonuclease P	Region start changed from 4375477 to 4375591 (114 bases)	gene	gene4052	http://www.ncbi.nlm.nih.gov/gene/?term=azo3991
azo3992	azo3992	rpmH	rpmH	4375593	4375931	-	putative Ribosomal protein L34	Putative Ribosomal protein L34. Has PF00468%2CRibosomal protein L34%3BIPR000271%2C Ribosomal_L34%3BRibosomes are the particles that catalyze mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain%2C situated in the P site as peptidyl-tRNA%2C is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA%2C extended by one residue%2C is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites.%3B~Function unclear	gene	gene4053	http://www.ncbi.nlm.nih.gov/gene/?term=azo3992
azo_rRNA_0001	azo_rRNA_0001		azo_rRNA_0001	2959702	2960079	-			gene	gene2734	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rRNA_0001
azo_rrn1	azo_rrn1		azo_rrn1	204806	206339	+			rRNA	gene188	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rrn1
azo_rrn2	azo_rrn2		azo_rrn2	206857	209743	+			rRNA	gene191	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rrn2
azo_rrn3	azo_rrn3		azo_rrn3	3515378	3516911	-			rRNA	gene3250	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rrn3
azo_rrn4	azo_rrn4		azo_rrn4	3511974	3514860	-			rRNA	gene3247	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rrn4
azo_rrn5	azo_rrn5		azo_rrn5	1391911	1393444	+			rRNA	gene1314	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rrn5
azo_rrn6	azo_rrn6		azo_rrn6	1393962	1396848	+			rRNA	gene1317	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rrn6
azo_rrn7	azo_rrn7		azo_rrn7	770728	772261	+			rRNA	gene728	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rrn7
azo_rrn8	azo_rrn8		azo_rrn8	772779	775665	+			rRNA	gene731	http://www.ncbi.nlm.nih.gov/gene/?term=azo_rrn8
azo_tRNA_0001	azo_tRNA_0001	tRNA-Arg	tRNA-Arg	204448	204524	+	tRNA-Arg		tRNA	gene187	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0001
azo_tRNA_0002	azo_tRNA_0002	tRNA-Ile	tRNA-Ile	206413	206489	+	tRNA-Ile		tRNA	gene189	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0002
azo_tRNA_0003	azo_tRNA_0003	tRNA-Ala	tRNA-Ala	206517	206592	+	tRNA-Ala		tRNA	gene190	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0003
azo_tRNA_0004	azo_tRNA_0004	tRNA-Lys	tRNA-Lys	438216	438288	-	tRNA-Lys		tRNA	gene415	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0004
azo_tRNA_0005	azo_tRNA_0005	tRNA-Lys	tRNA-Lys	601691	601766	-	tRNA-Lys		tRNA	gene575	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0005
azo_tRNA_0006	azo_tRNA_0006	tRNA-Ile	tRNA-Ile	772335	772411	+	tRNA-Ile		tRNA	gene729	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0006
azo_tRNA_0007	azo_tRNA_0007	tRNA-Ala	tRNA-Ala	772439	772514	+	tRNA-Ala		tRNA	gene730	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0007
azo_tRNA_0008	azo_tRNA_0008	tRNA-Gln	tRNA-Gln	807603	807679	-	tRNA-Gln		tRNA	gene765	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0008
azo_tRNA_0009	azo_tRNA_0009	tRNA-Met	tRNA-Met	832451	832527	-	tRNA-Met		tRNA	gene787	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0009
azo_tRNA_0010	azo_tRNA_0010	tRNA-Leu	tRNA-Leu	973414	973498	+	tRNA-Leu		tRNA	gene920	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0010
azo_tRNA_0011	azo_tRNA_0011	tRNA-Leu	tRNA-Leu	1005095	1005179	-	tRNA-Leu		tRNA	gene951	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0011
azo_tRNA_0012	azo_tRNA_0012	tRNA-Leu	tRNA-Leu	1005353	1005437	-	tRNA-Leu		tRNA	gene952	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0012
azo_tRNA_0013	azo_tRNA_0013	tRNA-Phe	tRNA-Phe	1052967	1053042	+	tRNA-Phe		tRNA	gene994	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0013
azo_tRNA_0014	azo_tRNA_0014	tRNA-Pro	tRNA-Pro	1091451	1091527	+	tRNA-Pro		tRNA	gene1030	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0014
azo_tRNA_0015	azo_tRNA_0015	tRNA-Ala	tRNA-Ala	1104890	1104965	+	tRNA-Ala		tRNA	gene1044	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0015
azo_tRNA_0016	azo_tRNA_0016	tRNA-Glu	tRNA-Glu	1104986	1105061	+	tRNA-Glu		tRNA	gene1045	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0016
azo_tRNA_0017	azo_tRNA_0017	tRNA-Asp	tRNA-Asp	1105124	1105200	+	tRNA-Asp		tRNA	gene1046	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0017
azo_tRNA_0018	azo_tRNA_0018	tRNA-Ala	tRNA-Ala	1105287	1105362	+	tRNA-Ala		tRNA	gene1047	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0018
azo_tRNA_0019	azo_tRNA_0019	tRNA-Glu	tRNA-Glu	1105372	1105447	+	tRNA-Glu		tRNA	gene1048	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0019
azo_tRNA_0020	azo_tRNA_0020	tRNA-Asp	tRNA-Asp	1105508	1105584	+	tRNA-Asp		tRNA	gene1049	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0020
azo_tRNA_0021	azo_tRNA_0021	tRNA-Val	tRNA-Val	1162391	1162467	+	tRNA-Val		tRNA	gene1101	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0021
azo_tRNA_0022	azo_tRNA_0022	tRNA-Pro	tRNA-Pro	1170058	1170134	+	tRNA-Pro		tRNA	gene1110	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0022
azo_tRNA_0023	azo_tRNA_0023	tRNA-Ser	tRNA-Ser	1184957	1185046	+	tRNA-Ser		tRNA	gene1125	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0023
azo_tRNA_0024	azo_tRNA_0024	tRNA-Thr	tRNA-Thr	1283196	1283271	+	tRNA-Thr		tRNA	gene1216	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0024
azo_tRNA_0025	azo_tRNA_0025	tRNA-Ile	tRNA-Ile	1393517	1393593	+	tRNA-Ile		tRNA	gene1315	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0025
azo_tRNA_0026	azo_tRNA_0026	tRNA-Ala	tRNA-Ala	1393621	1393696	+	tRNA-Ala		tRNA	gene1316	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0026
azo_tRNA_0027	azo_tRNA_0027	tRNA-Ser	tRNA-Ser	1445319	1445408	-	tRNA-Ser		tRNA	gene1358	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0027
azo_tRNA_0028	azo_tRNA_0028	tRNA-Arg	tRNA-Arg	1466272	1466348	-	tRNA-Arg		tRNA	gene1380	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0028
azo_tRNA_0029	azo_tRNA_0029	tRNA-Ala	tRNA-Ala	1508492	1508567	+	tRNA-Ala		tRNA	gene1413	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0029
azo_tRNA_0030	azo_tRNA_0030	tRNA-Leu	tRNA-Leu	1524791	1524875	+	tRNA-Leu		tRNA	gene1429	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0030
azo_tRNA_0031	azo_tRNA_0031	tRNA-Asn	tRNA-Asn	1771974	1772049	-	tRNA-Asn		tRNA	gene1644	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0031
azo_tRNA_0032	azo_tRNA_0032	tRNA-Asn	tRNA-Asn	1772115	1772190	-	tRNA-Asn		tRNA	gene1645	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0032
azo_tRNA_0033	azo_tRNA_0033	tRNA-Gly	tRNA-Gly	1809899	1809974	+	tRNA-Gly		tRNA	gene1686	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0033
azo_tRNA_0034	azo_tRNA_0034	tRNA-Cys	tRNA-Cys	1810049	1810122	+	tRNA-Cys		tRNA	gene1687	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0034
azo_tRNA_0035	azo_tRNA_0035	tRNA-Gly	tRNA-Gly	1810132	1810207	+	tRNA-Gly		tRNA	gene1688	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0035
azo_tRNA_0036	azo_tRNA_0036	tRNA-Leu	tRNA-Leu	1812221	1812305	-	tRNA-Leu		tRNA	gene1692	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0036
azo_tRNA_0037	azo_tRNA_0037	tRNA-Leu	tRNA-Leu	2045941	2046025	+	tRNA-Leu		tRNA	gene1903	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0037
azo_tRNA_0038	azo_tRNA_0038	tRNA-Val	tRNA-Val	2269150	2269224	-	tRNA-Val		tRNA	gene2110	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0038
azo_tRNA_0039	azo_tRNA_0039	tRNA-Val	tRNA-Val	2269263	2269337	-	tRNA-Val		tRNA	gene2111	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0039
azo_tRNA_0040	azo_tRNA_0040	tRNA-Val	tRNA-Val	2269418	2269493	-	tRNA-Val		tRNA	gene2112	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0040
azo_tRNA_0041	azo_tRNA_0041	tRNA-His	tRNA-His	2307999	2308074	-	tRNA-His		tRNA	gene2146	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0041
azo_tRNA_0042	azo_tRNA_0042	tRNA-Arg	tRNA-Arg	2308120	2308196	-	tRNA-Arg		tRNA	gene2147	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0042
azo_tRNA_0043	azo_tRNA_0043	tRNA-Pro	tRNA-Pro	2308224	2308300	-	tRNA-Pro		tRNA	gene2148	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0043
azo_tRNA_0044	azo_tRNA_0044	tRNA-Ser	tRNA-Ser	2508773	2508863	-	tRNA-Ser		tRNA	gene2336	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0044
azo_tRNA_0045	azo_tRNA_0045	tRNA-Met	tRNA-Met	2869372	2869448	-	tRNA-Met		tRNA	gene2638	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0045
azo_tRNA_0046	azo_tRNA_0046	tRNA-Thr	tRNA-Thr	2962600	2962675	-	tRNA-Thr		tRNA	gene2736	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0046
azo_tRNA_0047	azo_tRNA_0047	tRNA-Ser	tRNA-Ser	3423041	3423134	-	tRNA-Ser		tRNA	gene3165	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0047
azo_tRNA_0048	azo_tRNA_0048	tRNA-Arg	tRNA-Arg	3499971	3500045	+	tRNA-Arg		tRNA	gene3238	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0048
azo_tRNA_0049	azo_tRNA_0049	tRNA-Ala	tRNA-Ala	3515151	3515226	-	tRNA-Ala		tRNA	gene3248	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0049
azo_tRNA_0050	azo_tRNA_0050	tRNA-Ile	tRNA-Ile	3515254	3515330	-	tRNA-Ile		tRNA	gene3249	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0050
azo_tRNA_0051	azo_tRNA_0051		azo_tRNA_0051	3559218	3559501	+			tRNA	gene3283	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0051
azo_tRNA_0052	azo_tRNA_0052	tRNA-Trp	tRNA-Trp	3759284	3759359	-	tRNA-Trp		tRNA	gene3487	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0052
azo_tRNA_0053	azo_tRNA_0053	tRNA-Thr	tRNA-Thr	3760686	3760760	-	tRNA-Thr		tRNA	gene3489	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0053
azo_tRNA_0054	azo_tRNA_0054	tRNA-Gly	tRNA-Gly	3760782	3760855	-	tRNA-Gly		tRNA	gene3490	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0054
azo_tRNA_0055	azo_tRNA_0055	tRNA-Tyr	tRNA-Tyr	3760941	3761025	-	tRNA-Tyr		tRNA	gene3491	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0055
azo_tRNA_0056	azo_tRNA_0056	tRNA-Gly	tRNA-Gly	4144876	4144950	+	tRNA-Gly		tRNA	gene3843	http://www.ncbi.nlm.nih.gov/gene/?term=azo_tRNA_0056